Citrus Sinensis ID: 044932
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 689 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LN50 | 724 | Probable methyltransferas | yes | no | 0.973 | 0.926 | 0.665 | 0.0 | |
| Q8L7V3 | 829 | Probable methyltransferas | no | no | 0.850 | 0.706 | 0.458 | 1e-166 | |
| Q0WT31 | 770 | Probable methyltransferas | no | no | 0.934 | 0.836 | 0.427 | 1e-162 | |
| Q6NPR7 | 770 | Probable methyltransferas | no | no | 0.825 | 0.738 | 0.448 | 1e-160 | |
| Q9SD39 | 895 | Probable methyltransferas | no | no | 0.888 | 0.683 | 0.421 | 1e-160 | |
| Q9SIZ3 | 589 | Probable methyltransferas | no | no | 0.714 | 0.835 | 0.480 | 1e-133 | |
| Q9LYN3 | 610 | Probable methyltransferas | no | no | 0.711 | 0.803 | 0.449 | 1e-129 | |
| O22285 | 694 | Probable methyltransferas | no | no | 0.676 | 0.671 | 0.413 | 1e-104 | |
| Q9FG39 | 682 | Probable methyltransferas | no | no | 0.683 | 0.690 | 0.408 | 1e-104 | |
| Q94KE1 | 655 | Probable methyltransferas | no | no | 0.677 | 0.712 | 0.403 | 1e-100 |
| >sp|Q9LN50|PMTS_ARATH Probable methyltransferase PMT28 OS=Arabidopsis thaliana GN=At1g19430 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 946 bits (2444), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/691 (66%), Positives = 545/691 (78%), Gaps = 20/691 (2%)
Query: 1 TTQRESFDDIAEPVSADTKVISSKPQYTERKRQWHEIGKEEDKKVKLESDLDKAKEKKIN 60
QRESFDDIAEPVS+ TK S + +E + HE GK E K+KE K
Sbjct: 52 NVQRESFDDIAEPVSSRTK---SAHEVSESSKL-HERGKVESGS--------KSKEGKKV 99
Query: 61 GSASVTVIKHESRKKNEKTVPNVKKQKHTVKSVNEET--NEENEKSESDDSLKEDEEEQE 118
G +SV + + +K++ + P+ KK ++E+E++ESDDS + ++E+ E
Sbjct: 100 GGSSVHKHETKKKKEHAVSHPHKKKDVPKPVVEEVVVKEDQEHEEAESDDSDQSNKEDGE 159
Query: 119 QEVVDGKEEESVRESEVNGETEGDVDLVQQENEQSVVTVEGESGRSRSTGKKRKVKGPVF 178
+ G E + E E +G +G VD + V + E KKRK KGPVF
Sbjct: 160 E----GTESDG-NEGESDGNGDGSVD-DSSASVDEEVEEKNEEVTVNEISKKRKRKGPVF 213
Query: 179 DPKAHYSWKLCSTRSKHNYIPCIDNESGFGKFQSYRHTERSCPRSHLMCLVPLPHAGYGS 238
DPKA YSW+LC+TRSKHNY+PCIDN+ G+ QSYRH ERSCP+ +MCLVPLPH GY
Sbjct: 214 DPKAEYSWRLCNTRSKHNYMPCIDNDGLIGRLQSYRHRERSCPKKPVMCLVPLPHDGYDP 273
Query: 239 PVSWPDSRLKILYKNVAHPKLAAYIKKHNWLVESGEYLTFPQNQSEFKGGVLHYLESIEE 298
PVSWP+S+ KILYKNVAHPKLAAYIKKHNW+ E+GEYL+FPQNQ+ F G VL YLE I+E
Sbjct: 274 PVSWPESKSKILYKNVAHPKLAAYIKKHNWVNETGEYLSFPQNQTTFNGNVLQYLEFIQE 333
Query: 299 MVPDIEWGKNIRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVV 358
MVPDIEWGKN+R+VL+IG +D SFVA+LL K+VLT+++GLKDDLVDLAQVALERGFP V
Sbjct: 334 MVPDIEWGKNVRIVLDIGCSDSSFVAALLDKDVLTVSLGLKDDLVDLAQVALERGFPTFV 393
Query: 359 SPLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEE 418
S L +RRLPFPSGVFD IHC C + WH+HGGKLLLEMNRILRP+GYFILS+ +D IE++
Sbjct: 394 SSLASRRLPFPSGVFDTIHCAACGVHWHSHGGKLLLEMNRILRPNGYFILSSNNDKIEDD 453
Query: 419 EALTTLTASICWNILAHKTDEISEMGVKIYQKPESNDIYELRRKKNPPLCKENENPDAAW 478
EA+T LTASICWNILAHKT+E SEMGV+IYQKPESNDIYELRRKKNPPLC++NENPDAAW
Sbjct: 454 EAMTALTASICWNILAHKTEEASEMGVRIYQKPESNDIYELRRKKNPPLCEDNENPDAAW 513
Query: 479 YVPMKTCLHTIPSSIEQHGTEWPEEWPKRLETYPDWLNDKEKLSSDTRHWKAIVDRSYLT 538
YVPMKTC++ IPS+IEQHG EWPEEWPKRLETYP+WL KEK DT HW A+V++SYLT
Sbjct: 514 YVPMKTCIYEIPSAIEQHGAEWPEEWPKRLETYPEWLTSKEKAMEDTNHWNAMVNKSYLT 573
Query: 539 GLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAPDTLPVIYDRGLVGIYHDW 598
GLGIDW IRNVMDM +IYGGF A+L +Q +WVMNVVPVH+PDTLP IY+RGL+GIYHDW
Sbjct: 574 GLGIDWLHIRNVMDMTAIYGGFGASLVKQNVWVMNVVPVHSPDTLPFIYERGLLGIYHDW 633
Query: 599 CESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLE 658
CE FGTYPRSYDLLHADHLFSRLK+RC+QP SIVVEMDR+ RPGGW +VRDKVEIL+PLE
Sbjct: 634 CEPFGTYPRSYDLLHADHLFSRLKNRCKQPASIVVEMDRLTRPGGWVVVRDKVEILEPLE 693
Query: 659 GILRSLHWEIRMTYAQDKEGILCAQKTMWRP 689
ILRSLHWEIRMTYAQDKEG+LCAQKT+WRP
Sbjct: 694 EILRSLHWEIRMTYAQDKEGMLCAQKTLWRP 724
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q8L7V3|PMTQ_ARATH Probable methyltransferase PMT26 OS=Arabidopsis thaliana GN=At5g64030 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 585 bits (1507), Expect = e-166, Method: Compositional matrix adjust.
Identities = 279/609 (45%), Positives = 386/609 (63%), Gaps = 23/609 (3%)
Query: 100 ENEKSESDDSLKEDEEEQEQEVVDGKEEESVRESEVNGETEGDVDLVQQENEQSVVTVEG 159
EN+ D K ++E E V E+E ++E +G+ ++ NE +
Sbjct: 214 ENKTGNEDTETKTEKENTETNVDVQVEQEGQSKNETSGDLSPPGAQLELLNETTAQNGSF 273
Query: 160 ESGRSRSTGKKRKVKGPVFDPKAHYSWKLCSTRSKHNYIPCIDNESGFGKFQS---YRHT 216
+ + S +K KG K Y W LC+T + +YIPC+DN S Y H
Sbjct: 274 STQATESKNEKEAQKGS--GDKLDYKWALCNTTAGPDYIPCLDNVQAIRSLPSTKHYEHR 331
Query: 217 ERSCPRSHLMCLVPLPHAGYGSPVSWPDSRLKILYKNVAHPKLAAYIKKHNWLVESGEYL 276
ER CP S CLVPLP GY P+ WP SR KI Y NV H KLA Y NW+ +GEYL
Sbjct: 332 ERHCPDSPPTCLVPLPD-GYKRPIEWPKSREKIWYTNVPHTKLAEYKGHQNWVKVTGEYL 390
Query: 277 TFPQNQSEFKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAKEVLTLTV 336
TFP ++FK G LHY++ I+E VP I WGK RVVL++G SF L ++V+T+++
Sbjct: 391 TFPGGGTQFKHGALHYIDFIQESVPAIAWGKRSRVVLDVGCGVASFGGFLFDRDVITMSL 450
Query: 337 GLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEM 396
KD+ Q ALERG PA+ + +G RLPFP VFD +HC C + WH GGKLLLE+
Sbjct: 451 APKDEHEAQVQFALERGIPAISAVMGTTRLPFPGRVFDIVHCARCRVPWHIEGGKLLLEL 510
Query: 397 NRILRPSGYFILST------KHDSIEEEEALTTLTASICWNILAHKTDEISEMGVKIYQK 450
NR+LRP G+F+ S K + +E +A++ L +CW +++ D I+ +GV Y+K
Sbjct: 511 NRVLRPGGFFVWSATPVYQKKTEDVEIWKAMSELIKKMCWELVSINKDTINGVGVATYRK 570
Query: 451 PESNDIYELRRKKNPPLCKENENPDAAWYVPMKTCLHTIPSSIEQHGTEWPEEWPKRLET 510
P SN+ Y+ R + PP+C ++++P+A+W VP++ C+HT P Q G++WPE+WP RLE
Sbjct: 571 PTSNECYKNRSEPVPPICADSDDPNASWKVPLQACMHTAPEDKTQRGSQWPEQWPARLEK 630
Query: 511 YPDWLNDK----------EKLSSDTRHWKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGF 560
P WL+ E S+D HWK +V +SYL GLGI+W+ +RNVMDM+++YGGF
Sbjct: 631 APFWLSSSQTGVYGKAAPEDFSADYEHWKRVVTKSYLNGLGINWASVRNVMDMRAVYGGF 690
Query: 561 AAALAQQKIWVMNVVPVHAPDTLPVIYDRGLVGIYHDWCESFGTYPRSYDLLHADHLFSR 620
AAAL K+WVMNVVP+ +PDTL +IY+RGL GIYHDWCESF TYPRSYDLLHADHLFS+
Sbjct: 691 AAALRDLKVWVMNVVPIDSPDTLAIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSK 750
Query: 621 LKSRCRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGILRSLHWEIRMTYAQDKEGIL 680
LK RC +++ E+DR+LRP G IVRD E + +EG+++++ WE+RMTY+++KEG+L
Sbjct: 751 LKQRCNL-TAVIAEVDRVLRPEGKLIVRDDAETIQQVEGMVKAMKWEVRMTYSKEKEGLL 809
Query: 681 CAQKTMWRP 689
QK++WRP
Sbjct: 810 SVQKSIWRP 818
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q0WT31|PMTP_ARATH Probable methyltransferase PMT25 OS=Arabidopsis thaliana GN=At2g34300 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 573 bits (1476), Expect = e-162, Method: Compositional matrix adjust.
Identities = 289/676 (42%), Positives = 412/676 (60%), Gaps = 32/676 (4%)
Query: 41 EDKKVKLESDLDKAKEKKINGSASVTVIKHESRKKNEKTVPNVKKQKH-TVKSVNEETNE 99
E+ +VK +S+ + A+ ++N S+ E RK+++ + +K VK V E++E
Sbjct: 89 ENNQVKTDSE-NSAEGNQVNESSGEKTEAGEERKESDDNNGDGDGEKEKNVKEVGSESDE 147
Query: 100 ENEKSESDDSLKEDEEEQEQEVVDGKEEESVRE-SEVNGETEGDVDLVQQENEQSVVTVE 158
+K ++ L+E EE + E +G EE++ SE TE V +Q+ +T E
Sbjct: 148 TTQKEKT--QLEESTEENKSEDGNGNEEKAEENASETEESTEKSSKEVFPAGDQAEITKE 205
Query: 159 GESGRS-------RSTGKKRKVKGPVFDPKAHYSWKLCSTRSKHNYIPCIDNESGFGKFQ 211
+G S +K+ + + ++ Y WK C+ + +YIPC+DN K
Sbjct: 206 SSTGDGAWSTQLVESQNEKKAQQSSISKDQSSYGWKTCNVTAGPDYIPCLDNWQAIKKLH 265
Query: 212 S---YRHTERSCPRSHLMCLVPLPHAGYGSPVSWPDSRLKILYKNVAHPKLAAYIKKHNW 268
+ Y H ER CP CLV LP GY + WP SR KI Y NV H KLA NW
Sbjct: 266 TTMHYEHRERHCPEESPHCLVSLPD-GYKRSIKWPKSREKIWYNNVPHTKLAEIKGHQNW 324
Query: 269 LVESGEYLTFPQNQSEFKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA 328
+ SGE+LTFP ++FK G LHY++ I++ P I WG RV+L++G SF L
Sbjct: 325 VKMSGEHLTFPGGGTQFKNGALHYIDFIQQSHPAIAWGNRTRVILDVGCGVASFGGYLFE 384
Query: 329 KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWHAH 388
++VL L+ KD+ Q ALERG PA+++ +G +RLPFP VFD IHC C + WH
Sbjct: 385 RDVLALSFAPKDEHEAQVQFALERGIPAMLNVMGTKRLPFPGSVFDLIHCARCRVPWHIE 444
Query: 389 GGKLLLEMNRILRPSGYFILSTKHDSIEEEE------ALTTLTASICWNILAHKTDEISE 442
GGKLLLE+NR LRP G+F+ S + EE A++ LT ++CW ++ K D+++E
Sbjct: 445 GGKLLLELNRALRPGGFFVWSATPVYRKNEEDSGIWKAMSELTKAMCWKLVTIKKDKLNE 504
Query: 443 MGVKIYQKPESNDIYELRRKKNPPLCKENENPDAAWYVPMKTCLHTIPSSIEQHGTEWPE 502
+G IYQKP SN Y R + PPLCK++++ +AAW VP++ C+H + + G WP
Sbjct: 505 VGAAIYQKPTSNKCYNKRPQNEPPLCKDSDDQNAAWNVPLEACMHKVTEDSSKRGAVWPN 564
Query: 503 EWPKRLETYPDWLNDK---------EKLSSDTRHWKAIVDRSYLTGLGIDWSKIRNVMDM 553
WP+R+ET P+WL+ + E ++D WK IV ++YL +GIDWS +RNVMDM
Sbjct: 565 MWPERVETAPEWLDSQEGVYGKPAPEDFTADQEKWKTIVSKAYLNDMGIDWSNVRNVMDM 624
Query: 554 KSIYGGFAAALAQQKIWVMNVVPVHAPDTLPVIYDRGLVGIYHDWCESFGTYPRSYDLLH 613
+++YGGFAAAL K+WVMNVVPV APDTLP+IY+RGL GIYHDWCESF TYPR+YDLLH
Sbjct: 625 RAVYGGFAAALKDLKLWVMNVVPVDAPDTLPIIYERGLFGIYHDWCESFNTYPRTYDLLH 684
Query: 614 ADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGILRSLHWEIRMTYA 673
ADHLFS L+ RC VS++ E+DRILRP G I+RD +E L +E +++S+ W+++MT +
Sbjct: 685 ADHLFSTLRKRCNL-VSVMAEIDRILRPQGTFIIRDDMETLGEVEKMVKSMKWKVKMTQS 743
Query: 674 QDKEGILCAQKTMWRP 689
+D EG+L +K+ WRP
Sbjct: 744 KDNEGLLSIEKSWWRP 759
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q6NPR7|PMTO_ARATH Probable methyltransferase PMT24 OS=Arabidopsis thaliana GN=At1g29470 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 567 bits (1461), Expect = e-160, Method: Compositional matrix adjust.
Identities = 276/616 (44%), Positives = 379/616 (61%), Gaps = 47/616 (7%)
Query: 94 NEETNEENEKSESDDSLKEDEE--EQEQEVVDGKEEESVRESEVNGETEGDVDLVQQENE 151
N +EEN + +S+++ E EE E+ ++V ++ + + G LV+ +NE
Sbjct: 171 NAGESEENTEKKSEENAGETEESTEKSKDVFPAGDQAEITKESSTGSGAWSTQLVESQNE 230
Query: 152 QSVVTVEGESGRSRSTGKKRKVKGPVFDPKAHYSWKLCSTRSKHNYIPCIDNESGFGKFQ 211
KK +V + WK+C+ + +YIPC+DN K
Sbjct: 231 -----------------KKAQV--------SSIKWKVCNVTAGPDYIPCLDNWQAIRKLH 265
Query: 212 S---YRHTERSCPRSHLMCLVPLPHAGYGSPVSWPDSRLKILYKNVAHPKLAAYIKKHNW 268
S Y H ER CP CLV LP GY + WP SR KI Y N+ H KLA NW
Sbjct: 266 STKHYEHRERHCPEESPRCLVSLPE-GYKRSIKWPKSREKIWYTNIPHTKLAEVKGHQNW 324
Query: 269 LVESGEYLTFPQNQSEFKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA 328
+ SGEYLTFP ++FK G LHY++ ++E PDI WG RV+L++G SF L
Sbjct: 325 VKMSGEYLTFPGGGTQFKNGALHYIDFLQESYPDIAWGNRTRVILDVGCGVASFGGYLFD 384
Query: 329 KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWHAH 388
++VL L+ KD+ Q ALERG PA+ + +G +RLPFP VFD IHC C + WH
Sbjct: 385 RDVLALSFAPKDEHEAQVQFALERGIPAMSNVMGTKRLPFPGSVFDLIHCARCRVPWHIE 444
Query: 389 GGKLLLEMNRILRPSGYFILSTK--HDSIEEE----EALTTLTASICWNILAHKTDEISE 442
GGKLLLE+NR LRP G+F+ S + EE+ +A++ LT ++CW ++ K DE++E
Sbjct: 445 GGKLLLELNRALRPGGFFVWSATPVYRKTEEDVGIWKAMSKLTKAMCWELMTIKKDELNE 504
Query: 443 MGVKIYQKPESNDIYELRRKKNPPLCKENENPDAAWYVPMKTCLHTIPSSIEQHGTEWPE 502
+G IYQKP SN Y R + PPLCK++++ +AAW VP++ C+H + + G WPE
Sbjct: 505 VGAAIYQKPMSNKCYNERSQNEPPLCKDSDDQNAAWNVPLEACIHKVTEDSSKRGAVWPE 564
Query: 503 EWPKRLETYPDWLND---------KEKLSSDTRHWKAIVDRSYLTGLGIDWSKIRNVMDM 553
WP+R+ET P WL+ +E ++D WK IV +SYL G+GIDWS +RNVMDM
Sbjct: 565 SWPERVETVPQWLDSQEGVYGKPAQEDFTADHERWKTIVSKSYLNGMGIDWSYVRNVMDM 624
Query: 554 KSIYGGFAAALAQQKIWVMNVVPVHAPDTLPVIYDRGLVGIYHDWCESFGTYPRSYDLLH 613
+++YGGFAAAL K+WVMNVVP+ +PDTLP+IY+RGL GIYHDWCESF TYPR+YDLLH
Sbjct: 625 RAVYGGFAAALKDLKLWVMNVVPIDSPDTLPIIYERGLFGIYHDWCESFSTYPRTYDLLH 684
Query: 614 ADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGILRSLHWEIRMTYA 673
ADHLFS LK RC V ++ E+DRILRP G IVRD +E + +E +++S+ W +RMT++
Sbjct: 685 ADHLFSSLKKRCNL-VGVMAEVDRILRPQGTFIVRDDMETIGEIEKMVKSMKWNVRMTHS 743
Query: 674 QDKEGILCAQKTMWRP 689
+D EG+L QK+ WRP
Sbjct: 744 KDGEGLLSVQKSWWRP 759
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SD39|PMTR_ARATH Probable methyltransferase PMT27 OS=Arabidopsis thaliana GN=At3g51070 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 565 bits (1457), Expect = e-160, Method: Compositional matrix adjust.
Identities = 273/647 (42%), Positives = 408/647 (63%), Gaps = 35/647 (5%)
Query: 71 ESRKKNEKTVPNVKKQKHTVKSVNEETNEENEKSESD---------DSLKEDEEEQEQEV 121
E+ ++NE+ ++ KS+ +E ++ E + ++ + K++ EQ++E
Sbjct: 252 ETGQQNEEKTTASEENGKGEKSMKDENGQQEEHTTAEEESGNKEEESTSKDENMEQQEER 311
Query: 122 VDGKEEESVRESEVNGETEGDVDLVQQENEQSVVTVEGESGRSRSTGKKRKVKGPVFDPK 181
D K+ E E+ G Q++ +S T E + + R T + V+ + D
Sbjct: 312 KDEKKHEQGSEASGFGSGIPKESAESQKSWKSQAT-ESKDEKQRQTSESNTVER-IMDGN 369
Query: 182 AHYSWKLCSTRSKHNYIPCIDNESGFGKFQSYRH---TERSCPRSHLMCLVPLPHAGYGS 238
A W LC+ + +YIPC+DNE K +S RH ER CP CLVPLP GY
Sbjct: 370 A---WVLCNATAGTDYIPCLDNEEAIMKLRSRRHFEHRERHCPEDPPTCLVPLPE-GYKE 425
Query: 239 PVSWPDSRLKILYKNVAHPKLAAYIKKHNWLVESGEYLTFPQNQSEFKGGVLHYLESIEE 298
+ WP+SR KI Y NV H KLA NW+ +GE+LTFP ++F G LHY++ +++
Sbjct: 426 AIKWPESRDKIWYHNVPHTKLAEVKGHQNWVKVTGEFLTFPGGGTQFIHGALHYIDFLQQ 485
Query: 299 MVPDIEWGKNIRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVV 358
+ +I WGK RV+L++G SF L ++V+ +++ KD+ Q ALER PA+
Sbjct: 486 SLKNIAWGKRTRVILDVGCGVASFGGFLFERDVIAMSLAPKDEHEAQVQFALERKIPAIS 545
Query: 359 SPLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK--HDSIE 416
+ +G++RLPFPS VFD IHC C + WH GG LLLE+NR+LRP GYF+ S + +E
Sbjct: 546 AVMGSKRLPFPSRVFDLIHCARCRVPWHNEGGMLLLELNRMLRPGGYFVWSATPVYQKLE 605
Query: 417 EE----EALTTLTASICWNILAHKTDEISEMGVKIYQKPESNDIYELRRKKNPPLCKENE 472
E+ + ++ LT S+CW ++ D+++ +G IYQKP +N+ YE R+ PPLCK N+
Sbjct: 606 EDVQIWKEMSALTKSLCWELVTINKDKLNGIGAAIYQKPATNECYEKRKHNKPPLCKNND 665
Query: 473 NPDAAWYVPMKTCLHTIPSSIEQHGTEWPEEWPKRLETYPDWLNDKE----------KLS 522
+ +AAWYVP++ C+H +P+++ + G++WP WP+RL+T P WLN + +
Sbjct: 666 DANAAWYVPLQACMHKVPTNVVERGSKWPVNWPRRLQTPPYWLNSSQMGIYGKPAPRDFT 725
Query: 523 SDTRHWKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAPDT 582
+D HWK +V + Y+ +GI WS +RNVMDM+++YGGFAAAL ++WVMNVV +++PDT
Sbjct: 726 TDYEHWKHVVSKVYMNEIGISWSNVRNVMDMRAVYGGFAAALKDLQVWVMNVVNINSPDT 785
Query: 583 LPVIYDRGLVGIYHDWCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPG 642
LP+IY+RGL GIYHDWCESF TYPRSYDLLHADHLFS+L++RC V ++ E+DRI+RPG
Sbjct: 786 LPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSKLRTRCNL-VPVMAEVDRIVRPG 844
Query: 643 GWAIVRDKVEILDPLEGILRSLHWEIRMTYAQDKEGILCAQKTMWRP 689
G IVRD+ ++ +E +L+SLHW++ +T+++ +EGIL AQK WRP
Sbjct: 845 GKLIVRDESNVIREVENMLKSLHWDVHLTFSKHQEGILSAQKGFWRP 891
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SIZ3|PMTN_ARATH Probable methyltransferase PMT23 OS=Arabidopsis thaliana GN=At2g40280 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 476 bits (1226), Expect = e-133, Method: Compositional matrix adjust.
Identities = 248/516 (48%), Positives = 321/516 (62%), Gaps = 24/516 (4%)
Query: 186 WKLCSTRSKHNYIPCIDNESGFGKFQSYRHTE---RSCPRSHLMCLVPLPHAGYGSPVSW 242
W LC +YIPC+DN + + +S RH E R CP CL+PLP Y PV W
Sbjct: 80 WDLCKGAESVDYIPCLDNYAAIKQLKSRRHMEHRERHCPEPSPKCLLPLPD-NYKPPVPW 138
Query: 243 PDSRLKILYKNVAHPKLAAYIKKHNWLVESGEYLTFPQNQSEFKGGVLHYLESIEEMVPD 302
P SR I Y NV HPKL Y K+ NW+ + GE+L FP ++FK GV HY+E IE+ +P
Sbjct: 139 PKSRDMIWYDNVPHPKLVEYKKEQNWVKKEGEFLVFPGGGTQFKFGVTHYVEFIEKALPS 198
Query: 303 IEWGKNIRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLG 362
I+WGKNIRVVL++G SF SLL K+V+T++ KD+ Q ALERG PA +S +G
Sbjct: 199 IKWGKNIRVVLDVGCGVASFGGSLLDKDVITMSFAPKDEHEAQIQFALERGIPATLSVIG 258
Query: 363 NRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK-------HDSI 415
++L FPS FD IHC C + W A GGK LLE+NR+LRP G+FI S DS
Sbjct: 259 TQQLTFPSNAFDLIHCARCRVHWDADGGKPLLELNRVLRPGGFFIWSATPVYRDNDRDSR 318
Query: 416 EEEEALTTLTASICWNILAHKTDEISEMGVKIYQKPESNDIYELRRKKNPPLCKENENPD 475
E + +LT SICW ++ KT + S +G+ IYQKP S Y R ++PPLC + E +
Sbjct: 319 IWNE-MVSLTKSICWKVVT-KTVDSSGIGLVIYQKPTSESCYNKRSTQDPPLCDKKEA-N 375
Query: 476 AAWYVPMKTCLHTIPSSIEQHGTEWPEEWPKRLETY-PDWLNDK-EKLSSDTRHWKAIVD 533
+WYVP+ CL +PS Q WPE WPKRL + P ++ K E L DT W A V
Sbjct: 376 GSWYVPLAKCLSKLPSGNVQ---SWPELWPKRLVSVKPQSISVKAETLKKDTEKWSASVS 432
Query: 534 RSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAPDTLPVIYDRGLVG 593
YL L ++WS +RNVMDM + +GGFAAAL +WVMNVVPV PDTL V+YDRGL+G
Sbjct: 433 DVYLKHLAVNWSTVRNVMDMNAGFGGFAAALINLPLWVMNVVPVDKPDTLSVVYDRGLIG 492
Query: 594 IYHDWCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVEI 653
+YHDWCES TYPR+YDLLH+ L L RC + V +V E+DRI+RPGG+ +V+D +E
Sbjct: 493 VYHDWCESVNTYPRTYDLLHSSFLLGDLTQRC-EIVQVVAEIDRIVRPGGYLVVQDNMET 551
Query: 654 LDPLEGILRSLHWEIRMTYAQDKEGILCAQKTMWRP 689
+ LE IL SLHW ++ ++ L +K WRP
Sbjct: 552 IMKLESILGSLHWSTKIY----EDRFLVGRKGFWRP 583
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9LYN3|PMTM_ARATH Probable methyltransferase PMT22 OS=Arabidopsis thaliana GN=At3g56080 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 464 bits (1193), Expect = e-129, Method: Compositional matrix adjust.
Identities = 233/518 (44%), Positives = 317/518 (61%), Gaps = 28/518 (5%)
Query: 186 WKLCSTRSKHNYIPCIDNESGFGKFQSYR---HTERSCPRSHLMCLVPLPHAGYGSPVSW 242
WK C + +YIPC+DN K +S R H ER CP CLVPLP Y P+ W
Sbjct: 107 WKRCES---PDYIPCLDNTKAIKKLKSKRNMEHRERHCPERSPKCLVPLPQH-YKVPLPW 162
Query: 243 PDSRLKILYKNVAHPKLAAYIKKHNWLVESGEYLTFPQNQSEFKGGVLHYLESIEEMVPD 302
P SR I Y NV HPKL Y K NW+ +SG + FP ++FK GV+HY+ I++ +P
Sbjct: 163 PQSRDMIWYDNVPHPKLVEYKKDQNWVRKSGPFFVFPGGGTQFKDGVIHYINFIQKTLPI 222
Query: 303 IEWGKNIRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLG 362
++WGK +RVVL++G SF +LL K V+T++ KD+ Q ALERG PA ++ +G
Sbjct: 223 LDWGKKVRVVLDVGCGVASFGGTLLDKNVITMSFAPKDEHEAQIQFALERGIPATLAVIG 282
Query: 363 NRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST----KHDSIEEE 418
++LPFP +D IHC C + WH +GG+ LLE+NR+LRP G+F+ S +HD
Sbjct: 283 TQKLPFPDNAYDVIHCARCRVHWHGYGGRPLLELNRVLRPGGFFVWSATPVYQHDEGHRN 342
Query: 419 --EALTTLTASICWNILAHKTDEISEMGVKIYQKPESNDIYELRRKKNPPLCKENEN-PD 475
+ + +LT S+CW ++A +++G IYQKP+S+ YE R+ K+PPLC E E +
Sbjct: 343 VWKTMESLTTSMCWKVVART--RFTKVGFVIYQKPDSDSCYESRKNKDPPLCIEEETKKN 400
Query: 476 AAWYVPMKTCLHTIPSSIEQHGTEWPEEWPKRLETYPDWL----NDKEKLSSDTRHWKAI 531
++WY P+ TCL +P S +WP WP+RL P L +E D++ W +
Sbjct: 401 SSWYTPLLTCLPKLPVS---PIGKWPSGWPERLTETPVSLFREQRSEESFREDSKLWSGV 457
Query: 532 VDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAPDTLPVIYDRGL 591
+ YL L I+W++I NVMDM + YGGFAAAL + +WVMNV+PV DTL I+DRGL
Sbjct: 458 MSNIYLYSLAINWTRIHNVMDMNAGYGGFAAALINKPLWVMNVIPVEGEDTLSTIFDRGL 517
Query: 592 VGIYHDWCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKV 651
+GIYHDWCESF TYPRSYDLLH+ LF+ L RC + +VVE+DRILRPGG+ V+D V
Sbjct: 518 IGIYHDWCESFNTYPRSYDLLHSSFLFTNLSQRCDL-MEVVVEIDRILRPGGYLAVQDTV 576
Query: 652 EILDPLEGILRSLHWEIRMTYAQDKEGILCAQKTMWRP 689
E+L L IL SL W + + L K+ WRP
Sbjct: 577 EMLKKLNPILLSLRWSTNLYRGK----FLVGLKSSWRP 610
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O22285|PMTB_ARATH Probable methyltransferase PMT11 OS=Arabidopsis thaliana GN=At2g39750 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 380 bits (975), Expect = e-104, Method: Compositional matrix adjust.
Identities = 207/501 (41%), Positives = 289/501 (57%), Gaps = 35/501 (6%)
Query: 193 SKHNYIPCIDNESGFGKFQSYRHTER---SCPRSH--LMCLVPLPHAGYGSPVSWPDSRL 247
S YIPC+DN K +S ER CP L CLVP P GY P+ WP SR
Sbjct: 183 SMREYIPCLDNTDVIKKLKSTERGERFERHCPEKGKGLNCLVP-PPKGYRQPIPWPKSRD 241
Query: 248 KILYKNVAHPKLAAYIKKHNWLVESGEYLTFPQNQSEFKGGVLHYLESIEEMVPDIEWGK 307
++ + NV H +L NW+ FP ++F G YL+ + +MV DI +GK
Sbjct: 242 EVWFSNVPHTRLVEDKGGQNWISRDKNKFKFPGGGTQFIHGADQYLDQMSKMVSDITFGK 301
Query: 308 NIRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLP 367
+IRV +++G SF A LL+++V+T++V KD + Q ALERG PA+ + RRL
Sbjct: 302 HIRVAMDVGCGVASFGAYLLSRDVMTMSVAPKDVHENQIQFALERGVPAMAAAFATRRLL 361
Query: 368 FPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST----KHDSIEEEE--AL 421
+PS FD IHC C I W G LLLE+NR+LR GYF + KH+ EE+ +
Sbjct: 362 YPSQAFDLIHCSRCRINWTRDDGILLLEINRMLRAGGYFAWAAQPVYKHEPALEEQWTEM 421
Query: 422 TTLTASICWNILAHKTDEISEMGVKIYQKPESNDIYELRRKKN-PPLCKENENPDAAWYV 480
LT S+CW ++ E V I+QKP +ND Y R PPLC E+++PD WY
Sbjct: 422 LNLTISLCWKLVK------KEGYVAIWQKPFNNDCYLSREAGTKPPLCDESDDPDNVWYT 475
Query: 481 PMKTCLHTIPSSIEQHGTEWPEEWPKRLETYPD---------WLNDKEKLSSDTRHWKAI 531
+K C+ IP + +G P WP RL T PD ++ KE +++++W I
Sbjct: 476 NLKPCISRIPE--KGYGGNVP-LWPARLHTPPDRLQTIKFDSYIARKELFKAESKYWNEI 532
Query: 532 VDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKI--WVMNVVPVHAPDTLPVIYDR 589
+ Y+ L K+RNV+DM++ +GGFAAAL K+ WV++VVPV P+TLPVIYDR
Sbjct: 533 IG-GYVRALKWKKMKLRNVLDMRAGFGGFAAALNDHKLDCWVLSVVPVSGPNTLPVIYDR 591
Query: 590 GLVGIYHDWCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649
GL+G+ HDWCE F TYPR+YD LHA LFS + RC +I++EMDRILRPGG A +RD
Sbjct: 592 GLLGVMHDWCEPFDTYPRTYDFLHASGLFSIERKRCEMS-TILLEMDRILRPGGRAYIRD 650
Query: 650 KVEILDPLEGILRSLHWEIRM 670
++++D ++ I +++ W +
Sbjct: 651 SIDVMDEIQEITKAMGWHTSL 671
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9FG39|PMTC_ARATH Probable methyltransferase PMT12 OS=Arabidopsis thaliana GN=At5g06050 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 378 bits (971), Expect = e-104, Method: Compositional matrix adjust.
Identities = 208/509 (40%), Positives = 296/509 (58%), Gaps = 38/509 (7%)
Query: 186 WKLCSTRSKHNYIPCIDNESGFGKFQSY---RHTERSCPRSH--LMCLVPLPHAGYGSPV 240
+++CS + YIPC+DN + S ER+CP L C VP+P GY SP+
Sbjct: 149 FEICS-ENMTEYIPCLDNVEAIKRLNSTARGERFERNCPNDGMGLNCTVPIPQ-GYRSPI 206
Query: 241 SWPDSRLKILYKNVAHPKLAAYIKKHNWLVESGEYLTFPQNQSEFKGGVLHYLESIEEMV 300
WP SR ++ + NV H KL NW+ + + FP ++F G YL+ I +M+
Sbjct: 207 PWPRSRDEVWFNNVPHTKLVEDKGGQNWIYKENDKFKFPGGGTQFIHGADQYLDQISQMI 266
Query: 301 PDIEWGKNIRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVVSP 360
PDI +G + RVVL+IG SF A L+++ VLT+++ KD + Q ALERG PA+V+
Sbjct: 267 PDISFGNHTRVVLDIGCGVASFGAYLMSRNVLTMSIAPKDVHENQIQFALERGVPAMVAA 326
Query: 361 LGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST----KHDSIE 416
RRL +PS FD +HC C I W G LLLE+NR+LR GYF+ + KH+
Sbjct: 327 FTTRRLLYPSQAFDLVHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAAQPVYKHEKAL 386
Query: 417 EE--EALTTLTASICWNILAHKTDEISEMGVKIYQKPESNDIYELRRKK-NPPLCKENEN 473
EE E + LT +CW +L K E + I+QKP +N Y R +PPLC ++
Sbjct: 387 EEQWEEMLNLTTRLCW-VLVKK-----EGYIAIWQKPVNNTCYLSRGAGVSPPLCNSEDD 440
Query: 474 PDAAWYVPMKTCLHTIPSSIEQHGTEWP-EEWPKRLETYPD---------WLNDKEKLSS 523
PD WYV +K C+ + IE++G WP RL T PD ++ KE +
Sbjct: 441 PDNVWYVDLKACI----TRIEENGYGANLAPWPARLLTPPDRLQTIQIDSYIARKELFVA 496
Query: 524 DTRHWKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKI--WVMNVVPVHAPD 581
++++WK I+ +Y+ L +RNV+DM++ +GGFAAALA+ K+ WV+NV+PV P+
Sbjct: 497 ESKYWKEIIS-NYVNALHWKQIGLRNVLDMRAGFGGFAAALAELKVDCWVLNVIPVSGPN 555
Query: 582 TLPVIYDRGLVGIYHDWCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRP 641
TLPVIYDRGL+G+ HDWCE F TYPR+YDLLHA LFS + RC ++++EMDRILRP
Sbjct: 556 TLPVIYDRGLLGVMHDWCEPFDTYPRTYDLLHAAGLFSIERKRCNM-TTMMLEMDRILRP 614
Query: 642 GGWAIVRDKVEILDPLEGILRSLHWEIRM 670
GG +RD + + L+ I ++ W +
Sbjct: 615 GGRVYIRDTINVTSELQEIGNAMRWHTSL 643
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q94KE1|PMTA_ARATH Probable methyltransferase PMT10 OS=Arabidopsis thaliana GN=At1g77260 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 367 bits (942), Expect = e-100, Method: Compositional matrix adjust.
Identities = 202/501 (40%), Positives = 290/501 (57%), Gaps = 34/501 (6%)
Query: 187 KLCSTRSKHNYIPCIDNESGFGKFQSY---RHTERSCPRSHLMCLVPLPHAGYGSPVSWP 243
KLC ++K +YIPC+DNE + + + ER CP+ L CL+P P GY P+ WP
Sbjct: 144 KLCD-KTKIDYIPCLDNEEEIKRLNNTDRGENYERHCPKQSLDCLIP-PPDGYKKPIQWP 201
Query: 244 DSRLKILYKNVAHPKLAAYIKKHNWLVESGEYLTFPQNQSEFKGGVLHYLESIEEMVPDI 303
SR KI + NV H +L NW+ + FP ++F G YL+ I +M+PDI
Sbjct: 202 QSRDKIWFNNVPHTRLVEDKGGQNWIRREKDKFVFPGGGTQFIHGADQYLDQISQMIPDI 261
Query: 304 EWGKNIRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGN 363
+G RV L+IG SF A L+ + TL+V KD + Q ALERG PA+V+
Sbjct: 262 TFGSRTRVALDIGCGVASFGAFLMQRNTTTLSVAPKDVHENQIQFALERGVPAMVAVFAT 321
Query: 364 RRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST----KH-DSIEEE 418
RRL +PS F+ IHC C I W G LLLE+NR+LR GYF+ + KH D+++E+
Sbjct: 322 RRLLYPSQSFEMIHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAAQPVYKHEDNLQEQ 381
Query: 419 -EALTTLTASICWNILAHKTDEISEMGVKIYQKPESNDIYELRRK-KNPPLCKENENPDA 476
+ + LT ICW ++ E + +++KP +N Y R PPLC+ +++PD
Sbjct: 382 WKEMLDLTNRICWELIK------KEGYIAVWRKPLNNSCYVSREAGTKPPLCRPDDDPDD 435
Query: 477 AWYVPMKTCLHTIPSSIEQHGTEWPEEWPKRLETYPD---------WLNDKEKLSSDTRH 527
WYV MK C+ +P + +G WP RL P+ +++ KE + +++R
Sbjct: 436 VWYVDMKPCITRLPDN--GYGAN-VSTWPARLHDPPERLQSIQMDAYISRKEIMKAESRF 492
Query: 528 WKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKI--WVMNVVPVHAPDTLPV 585
W +V+ SY+ K+RNV+DM++ +GGFAAAL + WVMN+VPV +TLPV
Sbjct: 493 WLEVVE-SYVRVFRWKEFKLRNVLDMRAGFGGFAAALNDLGLDCWVMNIVPVSGFNTLPV 551
Query: 586 IYDRGLVGIYHDWCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWA 645
IYDRGL G HDWCE F TYPR+YDL+HA LFS K RC +I++EMDR+LRPGG
Sbjct: 552 IYDRGLQGAMHDWCEPFDTYPRTYDLIHAAFLFSVEKKRCNI-TNIMLEMDRMLRPGGHV 610
Query: 646 IVRDKVEILDPLEGILRSLHW 666
+RD + ++D L+ + +++ W
Sbjct: 611 YIRDSLSLMDQLQQVAKAIGW 631
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 689 | ||||||
| 224065579 | 736 | predicted protein [Populus trichocarpa] | 0.995 | 0.932 | 0.746 | 0.0 | |
| 255538636 | 735 | ATP binding protein, putative [Ricinus c | 0.991 | 0.929 | 0.743 | 0.0 | |
| 225458289 | 724 | PREDICTED: probable methyltransferase PM | 0.985 | 0.937 | 0.707 | 0.0 | |
| 356562347 | 699 | PREDICTED: probable methyltransferase PM | 0.943 | 0.929 | 0.673 | 0.0 | |
| 18394738 | 724 | putative methyltransferase PMT28 [Arabid | 0.973 | 0.926 | 0.665 | 0.0 | |
| 356552105 | 711 | PREDICTED: probable methyltransferase PM | 0.955 | 0.925 | 0.681 | 0.0 | |
| 449460100 | 722 | PREDICTED: probable methyltransferase PM | 0.979 | 0.934 | 0.677 | 0.0 | |
| 297850340 | 720 | hypothetical protein ARALYDRAFT_889384 [ | 0.966 | 0.925 | 0.657 | 0.0 | |
| 449516411 | 722 | PREDICTED: LOW QUALITY PROTEIN: probable | 0.979 | 0.934 | 0.671 | 0.0 | |
| 147771522 | 1762 | hypothetical protein VITISV_038533 [Viti | 0.907 | 0.354 | 0.624 | 0.0 |
| >gi|224065579|ref|XP_002301867.1| predicted protein [Populus trichocarpa] gi|222843593|gb|EEE81140.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1059 bits (2738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/691 (74%), Positives = 601/691 (86%), Gaps = 5/691 (0%)
Query: 3 QRESFDDIAEPVSADTKVISSKPQYTERKRQWHEIGKEEDKKVKLESDLD-KAKEKKING 61
QRESFDDIAEPV+ +T+V Q ER+++ HE + +K+ ESDLD K EKKING
Sbjct: 47 QRESFDDIAEPVAGNTRVSRPHTQSREREKEKHEPSRVNEKQ-NGESDLDLKKDEKKING 105
Query: 62 SASVTVIKHESRKKNEKTVPNV--KKQKHTVKSVNEETNEENEKSESDDSLKEDEEEQEQ 119
S S+ V +HESR+K++K ++ K++ K + E ++N+ E + ++EE+E
Sbjct: 106 SVSLVVNEHESRRKDKKEEASLERKEKDDGTKKLPNEGEKDNQGQEESGDEESEKEEEEG 165
Query: 120 EVVDGKEEESVRE-SEVNGETEGDVDLVQQENEQSVVTVEGESGRSRSTGKKRKVKGPVF 178
EVVDGK+E + E +E NG+ +GD DL+Q +++SV VE ES S+STGKKRK+KGPVF
Sbjct: 166 EVVDGKKEANDGENTEGNGDIQGDGDLIQNADQESVEEVEHESAGSKSTGKKRKIKGPVF 225
Query: 179 DPKAHYSWKLCSTRSKHNYIPCIDNESGFGKFQSYRHTERSCPRSHLMCLVPLPHAGYGS 238
DP AHYSW+LCSTRSKHNY+PCID ESG G+ QSYRHTERSCP++ MCLVPLPH GYG+
Sbjct: 226 DPNAHYSWRLCSTRSKHNYMPCIDIESGTGRLQSYRHTERSCPKTPPMCLVPLPHEGYGT 285
Query: 239 PVSWPDSRLKILYKNVAHPKLAAYIKKHNWLVESGEYLTFPQNQSEFKGGVLHYLESIEE 298
PV WP+S+LK+LY NVAHPKLAA+IKK++WLV+SGEYLTFPQNQSEFKGGV HYL+SIEE
Sbjct: 286 PVHWPESKLKVLYSNVAHPKLAAFIKKNSWLVQSGEYLTFPQNQSEFKGGVQHYLDSIEE 345
Query: 299 MVPDIEWGKNIRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVV 358
MVPDIEWGKNIRVVL+IG D SF ASLL KEVLTL++GLKDDLVDLAQVALERGFP VV
Sbjct: 346 MVPDIEWGKNIRVVLDIGCTDSSFAASLLDKEVLTLSLGLKDDLVDLAQVALERGFPTVV 405
Query: 359 SPLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEE 418
SP G+RRL FPSGVFDAIHC GCSI WH++GGKLLLEMNRILRP GYFILSTKHD+IEEE
Sbjct: 406 SPFGSRRLHFPSGVFDAIHCSGCSIPWHSNGGKLLLEMNRILRPGGYFILSTKHDNIEEE 465
Query: 419 EALTTLTASICWNILAHKTDEISEMGVKIYQKPESNDIYELRRKKNPPLCKENENPDAAW 478
EA+TTLTAS+CWN+LAHKTDE+ E+GVKIYQKPESNDIY LRR+K+PPLCKENENPDAAW
Sbjct: 466 EAMTTLTASVCWNVLAHKTDEVGEVGVKIYQKPESNDIYGLRRRKHPPLCKENENPDAAW 525
Query: 479 YVPMKTCLHTIPSSIEQHGTEWPEEWPKRLETYPDWLNDKEKLSSDTRHWKAIVDRSYLT 538
YVP+KTCLH +PS+IEQHGTEWPEEWPKRLETYPDW+N+KEKL +DT HWKAIV++SYLT
Sbjct: 526 YVPLKTCLHPVPSAIEQHGTEWPEEWPKRLETYPDWMNNKEKLVADTNHWKAIVEKSYLT 585
Query: 539 GLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAPDTLPVIYDRGLVGIYHDW 598
G+GIDWS IRN+MDMK+I GGFAAALAQ K+WVMNVVPVHAPDTLP+IY+RGL+G+YHDW
Sbjct: 586 GMGIDWSNIRNIMDMKAINGGFAAALAQHKVWVMNVVPVHAPDTLPIIYERGLIGVYHDW 645
Query: 599 CESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLE 658
CESFGTYPRSYDLLHADHLFSRLK+RCRQ SIVVEMDR+LRPGGWA++RDKVEILDPLE
Sbjct: 646 CESFGTYPRSYDLLHADHLFSRLKNRCRQAASIVVEMDRMLRPGGWAVIRDKVEILDPLE 705
Query: 659 GILRSLHWEIRMTYAQDKEGILCAQKTMWRP 689
GILRSLHWEIRMTYAQDKEGILCAQKTMWRP
Sbjct: 706 GILRSLHWEIRMTYAQDKEGILCAQKTMWRP 736
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255538636|ref|XP_002510383.1| ATP binding protein, putative [Ricinus communis] gi|223551084|gb|EEF52570.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1055 bits (2728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/697 (74%), Positives = 601/697 (86%), Gaps = 14/697 (2%)
Query: 1 TTQRESFDDIAEPVSADTKVISSKPQYTERKRQWHEIGKEEDKKVKLESDLDKAK-EKKI 59
TTQRESFDDIAEPV + KV SSK Q E + Q H+ G+E D+KVK++SDL+ ++ EKKI
Sbjct: 45 TTQRESFDDIAEPVPGNQKVSSSKTQSKEIEPQKHKSGRE-DQKVKVQSDLELSEDEKKI 103
Query: 60 NGSAS-VTVIKHESRKKNEKTVPNVKKQKHTVKS------VNEETNEENEKSESDDSLKE 112
NGSAS + V +HES KK ++ + K++K S V + N+ +SES+ L++
Sbjct: 104 NGSASSLPVNEHESLKKGKQESSHEKRKKDRDSSKKLPNGVAKHNNDMQVESESE-GLEK 162
Query: 113 DEEEQEQEVVDGKEEESVRESEVNGETEGDVDLVQQENEQSVVTVEGESGRSRSTGKKRK 172
DEEE E VVDG+EE + + E NG+ EG+ +++ ++++ VE + S KK+K
Sbjct: 163 DEEEGE--VVDGREEVTDGQLEGNGDAEGEGGMIETMDQEATAAVEDD--ESAGKKKKQK 218
Query: 173 VKGPVFDPKAHYSWKLCSTRSKHNYIPCIDNESGFGKFQSYRHTERSCPRSHLMCLVPLP 232
+KGP+FDPKAHY+W+LCSTRSKHNYIPCID E+G G+ QSYRHTERSCPR+ +CLVPLP
Sbjct: 219 IKGPLFDPKAHYNWRLCSTRSKHNYIPCIDIENGNGRLQSYRHTERSCPRTPPLCLVPLP 278
Query: 233 HAGYGSPVSWPDSRLKILYKNVAHPKLAAYIKKHNWLVESGEYLTFPQNQSEFKGGVLHY 292
H Y SPV WP S+LKI YKNVAHPKL A+IKK++WLV+SG+YLTFPQNQ+EFKGGV HY
Sbjct: 279 HGSYDSPVRWPGSKLKIFYKNVAHPKLDAFIKKNSWLVQSGDYLTFPQNQTEFKGGVQHY 338
Query: 293 LESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALER 352
LESIEEMVPDIEWGKNIRVVL+IG D SF ASLL K VLTL++GLKDDLVDLAQ+ LER
Sbjct: 339 LESIEEMVPDIEWGKNIRVVLDIGCTDSSFGASLLDKNVLTLSLGLKDDLVDLAQLVLER 398
Query: 353 GFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412
GFPAVVSP G RRLPFPSGVFD IHC CSI WH+HGGKLLLEMNRILRP GYFILSTKH
Sbjct: 399 GFPAVVSPFGTRRLPFPSGVFDTIHCGECSIPWHSHGGKLLLEMNRILRPGGYFILSTKH 458
Query: 413 DSIEEEEALTTLTASICWNILAHKTDEISEMGVKIYQKPESNDIYELRRKKNPPLCKENE 472
D+IEEEEA+TTLTASICWNILAHKTDE+SE+GVKIYQKPESNDIYELRRKKNPPLCKENE
Sbjct: 459 DNIEEEEAMTTLTASICWNILAHKTDEVSEVGVKIYQKPESNDIYELRRKKNPPLCKENE 518
Query: 473 NPDAAWYVPMKTCLHTIPSSIEQHGTEWPEEWPKRLETYPDWLNDKEKLSSDTRHWKAIV 532
NPDAAWYVPMKTCLHTIPSSIEQHGTEWPEEWPKRLETYPDW+N+KEKL +DT+HWKA+V
Sbjct: 519 NPDAAWYVPMKTCLHTIPSSIEQHGTEWPEEWPKRLETYPDWMNNKEKLIADTKHWKALV 578
Query: 533 DRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAPDTLPVIYDRGLV 592
++SYLTG+GIDWSK+RNVMDMK+I GGFAAAL+QQ++WVMNVVPVHAPDTLP+IY+RGLV
Sbjct: 579 EKSYLTGIGIDWSKLRNVMDMKAINGGFAAALSQQEVWVMNVVPVHAPDTLPIIYERGLV 638
Query: 593 GIYHDWCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVE 652
G+YHDWCESFGTYPRSYDLLHADHLFSRLK+RC+QPVSIVVEMDRILRPGGWAI+R+KVE
Sbjct: 639 GVYHDWCESFGTYPRSYDLLHADHLFSRLKNRCKQPVSIVVEMDRILRPGGWAIIREKVE 698
Query: 653 ILDPLEGILRSLHWEIRMTYAQDKEGILCAQKTMWRP 689
I++ LEGILRSLHWEIRMTYAQDKEGILCAQKT WRP
Sbjct: 699 IVEALEGILRSLHWEIRMTYAQDKEGILCAQKTTWRP 735
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225458289|ref|XP_002281457.1| PREDICTED: probable methyltransferase PMT28 [Vitis vinifera] gi|302142491|emb|CBI19694.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 997 bits (2578), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/690 (70%), Positives = 573/690 (83%), Gaps = 11/690 (1%)
Query: 1 TTQRESFDDIAEPVSADTKVISSKPQYTERKRQWHEIGKEEDKKVKLESDLDKAKEKKIN 60
T+QR SF DI EPV T V SS+ + + + E+ +K VK ESDL++ EKK++
Sbjct: 45 TSQRSSFGDINEPVPGSTGVGSSRTGLKKNEPEKTELSGGRNK-VKFESDLEEKDEKKLD 103
Query: 61 GSASVTVIKHESRKKNEKTVPNVKKQKHTVKSVNEETNEENEKSE-SDDSLKEDEEEQEQ 119
GS ++ + S ++K N K E +++N SE S++ E E+E+ +
Sbjct: 104 GSVTLAANGNNSTNIDKKEEANEGK---------EGIDKQNHGSEGSENKESEKEKEEGE 154
Query: 120 EVVDGKEEESVRESEVNGETEGDVDLVQQENEQSVVTVEGESGRSRSTGKKRKVKGPVFD 179
D KEE RE E N + + D D E+ V VE ESG S+STGKK+K GP+FD
Sbjct: 155 VGGDDKEEAVDREGEANEDVDADGDWAVTVEEEPVGKVEEESGGSKSTGKKKKRNGPLFD 214
Query: 180 PKAHYSWKLCSTRSKHNYIPCIDNESGFGKFQSYRHTERSCPRSHLMCLVPLPHAGYGSP 239
KA Y+WKLCSTRSKHNYIPCIDNESG G+ QSYRH ERSCPR+ MCL+PLP GY SP
Sbjct: 215 LKAQYTWKLCSTRSKHNYIPCIDNESGTGRLQSYRHRERSCPRTPPMCLIPLPAKGYSSP 274
Query: 240 VSWPDSRLKILYKNVAHPKLAAYIKKHNWLVESGEYLTFPQNQSEFKGGVLHYLESIEEM 299
V WP+S+LK+LYKNVAHPKLAA+IK H+W+VESGEYL FPQNQSEFKGGV HYLES+EEM
Sbjct: 275 VPWPESKLKVLYKNVAHPKLAAFIKTHSWVVESGEYLMFPQNQSEFKGGVFHYLESLEEM 334
Query: 300 VPDIEWGKNIRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVVS 359
VPDIEWGKNIRVVL+IG D+SF A LL KEVLTL++GLKDDLVDLAQVALERGFPAVVS
Sbjct: 335 VPDIEWGKNIRVVLDIGCTDVSFGAFLLDKEVLTLSLGLKDDLVDLAQVALERGFPAVVS 394
Query: 360 PLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEE 419
P G RRLPFPSGVFDAIHC GC+I WH++GGKLLLEMNRILRP GYFILS+KHD+IE+EE
Sbjct: 395 PFGTRRLPFPSGVFDAIHCGGCNIAWHSNGGKLLLEMNRILRPGGYFILSSKHDNIEDEE 454
Query: 420 ALTTLTASICWNILAHKTDEISEMGVKIYQKPESNDIYELRRKKNPPLCKENENPDAAWY 479
+T+LTASICWN+LAHKTDEISE+GVKIYQKPESNDIYELRRKKNPP+CKE+E PDAAWY
Sbjct: 455 EMTSLTASICWNVLAHKTDEISEVGVKIYQKPESNDIYELRRKKNPPICKEDEKPDAAWY 514
Query: 480 VPMKTCLHTIPSSIEQHGTEWPEEWPKRLETYPDWLNDKEKLSSDTRHWKAIVDRSYLTG 539
VPMKTCLHTIP++IE+ GTEWPEEWPKRL+T+PDWL +++KL +D+ HWKAIV +SYLTG
Sbjct: 515 VPMKTCLHTIPAAIEERGTEWPEEWPKRLDTFPDWLENRDKLIADSEHWKAIVSKSYLTG 574
Query: 540 LGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAPDTLPVIYDRGLVGIYHDWC 599
+GIDWS + N++DMKSIYGGFAAAL+ QK+WVMNVVPVHAPDTLP+IY+RGLVGIYHDWC
Sbjct: 575 MGIDWSNVHNILDMKSIYGGFAAALSDQKVWVMNVVPVHAPDTLPIIYERGLVGIYHDWC 634
Query: 600 ESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLEG 659
ESFGTYPRSYDLLHADH+FSRLK+RC+QPV+IVVEMDRILRPGGWAI+RDKVEILDPLEG
Sbjct: 635 ESFGTYPRSYDLLHADHMFSRLKNRCKQPVAIVVEMDRILRPGGWAIIRDKVEILDPLEG 694
Query: 660 ILRSLHWEIRMTYAQDKEGILCAQKTMWRP 689
ILRS+HWEIRMT+AQDKEGI+CAQKT+WRP
Sbjct: 695 ILRSMHWEIRMTFAQDKEGIMCAQKTLWRP 724
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356562347|ref|XP_003549433.1| PREDICTED: probable methyltransferase PMT28-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 956 bits (2470), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/690 (67%), Positives = 552/690 (80%), Gaps = 40/690 (5%)
Query: 3 QRESFDDIAEPVSADTKVISSKPQYTERKRQWHEIGKEEDKKVKLESDLDKAKEKKINGS 62
QRESF+DIAEP S+ + S KPQ ++ K+E KK
Sbjct: 47 QRESFEDIAEPASSSS---SHKPQ---------KLKKDESKK-----------------H 77
Query: 63 ASVTVIKHESRKKNEKTVPNVKKQKHTVKSVNEETNEENEKSESDDSLKEDEEEQEQEVV 122
S H + K + + K++KH K E+ N+E + ++ + +++E++
Sbjct: 78 PSAATRHHPEQHKGKDNNNDNKEKKHVHK---EDNNKEKGNHQGNEDPQPQHDQEEEKEK 134
Query: 123 DGKEEESVRESEVN---GETEGDVDLVQQENEQSVVTVEGESGRSRSTGKKRKVKGPVFD 179
+ +E E E++V+ G+ VD Q +++++V VE S+ GK VKGP+FD
Sbjct: 135 EKEEVEVEGEADVDAGGGDLAESVD--QGDSDEAVEDVEEVRKASKGKGK---VKGPLFD 189
Query: 180 PKAHYSWKLCSTRSKHNYIPCIDNESGFGKFQSYRHTERSCPRSHLMCLVPLPHAGYGSP 239
P A YSWKLCSTRSKHNYIPCID E G GK SYRHTERSCPR+ MCLVPLPH GY SP
Sbjct: 190 PNATYSWKLCSTRSKHNYIPCIDIEVGGGKVPSYRHTERSCPRTPFMCLVPLPHEGYESP 249
Query: 240 VSWPDSRLKILYKNVAHPKLAAYIKKHNWLVESGEYLTFPQNQSEFKGGVLHYLESIEEM 299
+ WP+S+LKILYKNVAHPKLAAY+K+HNWL+ESGEYLTFPQNQSEFKGG+LHYLESIEEM
Sbjct: 250 LPWPESKLKILYKNVAHPKLAAYVKRHNWLMESGEYLTFPQNQSEFKGGILHYLESIEEM 309
Query: 300 VPDIEWGKNIRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVVS 359
VPDIEWGKNIRVVL+IG D S A+L KE+LTL++GLK+DLVDLAQVALERGFPAV+S
Sbjct: 310 VPDIEWGKNIRVVLDIGCTDSSLAAALFDKEILTLSLGLKNDLVDLAQVALERGFPAVIS 369
Query: 360 PLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEE 419
PLG RRLPFPS FDAIHC GCSI WH++GGKLLLEMNRILRP GYFI+STKHDSIEEEE
Sbjct: 370 PLGRRRLPFPSQSFDAIHCGGCSIPWHSNGGKLLLEMNRILRPGGYFIMSTKHDSIEEEE 429
Query: 420 ALTTLTASICWNILAHKTDEISEMGVKIYQKPESNDIYELRRKKNPPLCKENENPDAAWY 479
A+TTLTASICWN+LAHK+D++ E+GVKIYQKPE NDIYELRRKK PP+CKENENPDAAWY
Sbjct: 430 AMTTLTASICWNVLAHKSDDVGEVGVKIYQKPEGNDIYELRRKKVPPICKENENPDAAWY 489
Query: 480 VPMKTCLHTIPSSIEQHGTEWPEEWPKRLETYPDWLNDKEKLSSDTRHWKAIVDRSYLTG 539
VP+KTCLHTIP IE HG EWPEEWPKRLE+YPDW+NDKEK+ +DT HW A+ ++SYL G
Sbjct: 490 VPIKTCLHTIPIGIELHGAEWPEEWPKRLESYPDWVNDKEKVVADTNHWNAVANKSYLNG 549
Query: 540 LGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAPDTLPVIYDRGLVGIYHDWC 599
LGI+W+ IRNVMDMKS+YGG A AL+QQK+WVMNVVPVHAPDTLP+I++RGL+GIYHDWC
Sbjct: 550 LGINWTSIRNVMDMKSVYGGLAVALSQQKVWVMNVVPVHAPDTLPIIFERGLIGIYHDWC 609
Query: 600 ESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLEG 659
ESFGTYPR+YDLLHADHLFSRLK+RC+QPV+IVVEMDRILRPGGW I+RDKVEIL+PLE
Sbjct: 610 ESFGTYPRTYDLLHADHLFSRLKNRCKQPVTIVVEMDRILRPGGWIIIRDKVEILNPLEE 669
Query: 660 ILRSLHWEIRMTYAQDKEGILCAQKTMWRP 689
IL+S+ WEIRMT+AQDKEGILCA+KTMWRP
Sbjct: 670 ILKSMQWEIRMTFAQDKEGILCARKTMWRP 699
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18394738|ref|NP_564084.1| putative methyltransferase PMT28 [Arabidopsis thaliana] gi|75174900|sp|Q9LN50.1|PMTS_ARATH RecName: Full=Probable methyltransferase PMT28 gi|8778438|gb|AAF79446.1|AC025808_28 F18O14.20 [Arabidopsis thaliana] gi|15810125|gb|AAL07206.1| unknown protein [Arabidopsis thaliana] gi|25054951|gb|AAN71952.1| unknown protein [Arabidopsis thaliana] gi|332191730|gb|AEE29851.1| putative methyltransferase PMT28 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 946 bits (2444), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/691 (66%), Positives = 545/691 (78%), Gaps = 20/691 (2%)
Query: 1 TTQRESFDDIAEPVSADTKVISSKPQYTERKRQWHEIGKEEDKKVKLESDLDKAKEKKIN 60
QRESFDDIAEPVS+ TK S + +E + HE GK E K+KE K
Sbjct: 52 NVQRESFDDIAEPVSSRTK---SAHEVSESSKL-HERGKVESGS--------KSKEGKKV 99
Query: 61 GSASVTVIKHESRKKNEKTVPNVKKQKHTVKSVNEET--NEENEKSESDDSLKEDEEEQE 118
G +SV + + +K++ + P+ KK ++E+E++ESDDS + ++E+ E
Sbjct: 100 GGSSVHKHETKKKKEHAVSHPHKKKDVPKPVVEEVVVKEDQEHEEAESDDSDQSNKEDGE 159
Query: 119 QEVVDGKEEESVRESEVNGETEGDVDLVQQENEQSVVTVEGESGRSRSTGKKRKVKGPVF 178
+ G E + E E +G +G VD + V + E KKRK KGPVF
Sbjct: 160 E----GTESDG-NEGESDGNGDGSVD-DSSASVDEEVEEKNEEVTVNEISKKRKRKGPVF 213
Query: 179 DPKAHYSWKLCSTRSKHNYIPCIDNESGFGKFQSYRHTERSCPRSHLMCLVPLPHAGYGS 238
DPKA YSW+LC+TRSKHNY+PCIDN+ G+ QSYRH ERSCP+ +MCLVPLPH GY
Sbjct: 214 DPKAEYSWRLCNTRSKHNYMPCIDNDGLIGRLQSYRHRERSCPKKPVMCLVPLPHDGYDP 273
Query: 239 PVSWPDSRLKILYKNVAHPKLAAYIKKHNWLVESGEYLTFPQNQSEFKGGVLHYLESIEE 298
PVSWP+S+ KILYKNVAHPKLAAYIKKHNW+ E+GEYL+FPQNQ+ F G VL YLE I+E
Sbjct: 274 PVSWPESKSKILYKNVAHPKLAAYIKKHNWVNETGEYLSFPQNQTTFNGNVLQYLEFIQE 333
Query: 299 MVPDIEWGKNIRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVV 358
MVPDIEWGKN+R+VL+IG +D SFVA+LL K+VLT+++GLKDDLVDLAQVALERGFP V
Sbjct: 334 MVPDIEWGKNVRIVLDIGCSDSSFVAALLDKDVLTVSLGLKDDLVDLAQVALERGFPTFV 393
Query: 359 SPLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEE 418
S L +RRLPFPSGVFD IHC C + WH+HGGKLLLEMNRILRP+GYFILS+ +D IE++
Sbjct: 394 SSLASRRLPFPSGVFDTIHCAACGVHWHSHGGKLLLEMNRILRPNGYFILSSNNDKIEDD 453
Query: 419 EALTTLTASICWNILAHKTDEISEMGVKIYQKPESNDIYELRRKKNPPLCKENENPDAAW 478
EA+T LTASICWNILAHKT+E SEMGV+IYQKPESNDIYELRRKKNPPLC++NENPDAAW
Sbjct: 454 EAMTALTASICWNILAHKTEEASEMGVRIYQKPESNDIYELRRKKNPPLCEDNENPDAAW 513
Query: 479 YVPMKTCLHTIPSSIEQHGTEWPEEWPKRLETYPDWLNDKEKLSSDTRHWKAIVDRSYLT 538
YVPMKTC++ IPS+IEQHG EWPEEWPKRLETYP+WL KEK DT HW A+V++SYLT
Sbjct: 514 YVPMKTCIYEIPSAIEQHGAEWPEEWPKRLETYPEWLTSKEKAMEDTNHWNAMVNKSYLT 573
Query: 539 GLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAPDTLPVIYDRGLVGIYHDW 598
GLGIDW IRNVMDM +IYGGF A+L +Q +WVMNVVPVH+PDTLP IY+RGL+GIYHDW
Sbjct: 574 GLGIDWLHIRNVMDMTAIYGGFGASLVKQNVWVMNVVPVHSPDTLPFIYERGLLGIYHDW 633
Query: 599 CESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLE 658
CE FGTYPRSYDLLHADHLFSRLK+RC+QP SIVVEMDR+ RPGGW +VRDKVEIL+PLE
Sbjct: 634 CEPFGTYPRSYDLLHADHLFSRLKNRCKQPASIVVEMDRLTRPGGWVVVRDKVEILEPLE 693
Query: 659 GILRSLHWEIRMTYAQDKEGILCAQKTMWRP 689
ILRSLHWEIRMTYAQDKEG+LCAQKT+WRP
Sbjct: 694 EILRSLHWEIRMTYAQDKEGMLCAQKTLWRP 724
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356552105|ref|XP_003544411.1| PREDICTED: probable methyltransferase PMT28-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 941 bits (2431), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/694 (68%), Positives = 550/694 (79%), Gaps = 36/694 (5%)
Query: 3 QRESFDDIAEPVSADTKVISSKPQYTERKRQWHEIGKEEDKKVKLESDLDKAKEKKINGS 62
QRESF+DIAEPVS+ + S KPQ + K + EKK NG+
Sbjct: 47 QRESFEDIAEPVSSSS---SHKPQ-------------KLKKDESKKGGGGGKSEKKSNGN 90
Query: 63 ASVTVIKHESRKKNEKTVPNVKKQKHTVKSVNEETNEE--NEKSESDDSLKEDEEEQEQE 120
S S + K N KK+K K V++E N+E N + + D + D+EE+E+
Sbjct: 91 GS-------SHPEQHKGKDNQKKEK---KRVHKEDNKEKGNHRGDEDPQPQHDQEEKEKR 140
Query: 121 VVDGKEEESV----RESEVNGETEGDVDLVQQENEQSVVTVEG-ESGRSRSTGKKRKVKG 175
+ + E RESE + + +G DL + ++ VE E R S GK VKG
Sbjct: 141 EEEVEVEGEEERVDRESEGDVDADGGGDLAESVDQGDSEAVEDVEEVRKASKGK---VKG 197
Query: 176 PVFDPKAHYSWKLCSTRSKHNYIPCIDNESGFGKFQSYRHTERSCPRSHLMCLVPLPHAG 235
P+F+P A YSWKLCSTRSKHNYIPCID E G GK SYRHTERSCPR+ MC+VPLPH G
Sbjct: 198 PLFNPNATYSWKLCSTRSKHNYIPCIDIEVGGGKVPSYRHTERSCPRTPFMCMVPLPHEG 257
Query: 236 YGSPVSWPDSRLKILYKNVAHPKLAAYIKKHNWLVESGEYLTFPQNQSEFKGGVLHYLES 295
YG P+ WP+S+LKILYKNVAHPKLAAYIK+HNWL+ESGEYLTFPQNQSE KGG+ HYLES
Sbjct: 258 YGFPLPWPESKLKILYKNVAHPKLAAYIKRHNWLMESGEYLTFPQNQSELKGGIHHYLES 317
Query: 296 IEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFP 355
IEEMVPDIEWGKNIRVVL+IG D SF A+LL KEVLTL++GLK+DLVDLAQVALERG P
Sbjct: 318 IEEMVPDIEWGKNIRVVLDIGCTDSSFAAALLDKEVLTLSLGLKNDLVDLAQVALERGIP 377
Query: 356 AVVSPLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSI 415
AV+SP RRLPFPS FDAIHC GC I WH++GGKLLLEMNRILRP GYFI+STKHDSI
Sbjct: 378 AVISPFSRRRLPFPSQSFDAIHCGGCGIPWHSNGGKLLLEMNRILRPGGYFIMSTKHDSI 437
Query: 416 EEEEALTTLTASICWNILAHKTDEISEMGVKIYQKPESNDIYELRRKKNPPLCKENENPD 475
EEEEA+TTLTASICWN+LAHK+D++ E+GVKIYQKPE NDIYELRRKK PPLCKENENPD
Sbjct: 438 EEEEAMTTLTASICWNVLAHKSDDVGEVGVKIYQKPEGNDIYELRRKKVPPLCKENENPD 497
Query: 476 AAWYVPMKTCLHTIPSSIEQHGTEWPEEWPKRLETYPDWLNDKEKLSSDTRHWKAIVDRS 535
AAWYV MKTCLHTIP IEQHG EWPEEWPKRLE+YPDW+N+KEK+ +DT HW A+ ++S
Sbjct: 498 AAWYVSMKTCLHTIPIGIEQHGAEWPEEWPKRLESYPDWVNNKEKVVADTNHWNAVANKS 557
Query: 536 YLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAPDTLPVIYDRGLVGIY 595
YL GLGI+W+ IRNVMDMKS+YGG A AL+QQK+WVMNVVPVHAPDTLP+I++RGL+GIY
Sbjct: 558 YLNGLGINWTSIRNVMDMKSVYGGLAVALSQQKVWVMNVVPVHAPDTLPIIFERGLIGIY 617
Query: 596 HDWCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVEILD 655
HDWCESFGTYPR+YDLLHADHLFSRLK+RC+QPV+IVVE+DRILRPGGW I+RDKVEIL+
Sbjct: 618 HDWCESFGTYPRTYDLLHADHLFSRLKNRCKQPVTIVVEVDRILRPGGWIIIRDKVEILN 677
Query: 656 PLEGILRSLHWEIRMTYAQDKEGILCAQKTMWRP 689
PLE IL+S+ WEIRMT+AQDKEGILCAQKTMWRP
Sbjct: 678 PLEEILKSMQWEIRMTFAQDKEGILCAQKTMWRP 711
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449460100|ref|XP_004147784.1| PREDICTED: probable methyltransferase PMT28-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 929 bits (2402), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/692 (67%), Positives = 555/692 (80%), Gaps = 17/692 (2%)
Query: 1 TTQRESFDDIAEPVSADTKVISSKPQYTERKRQWHEIGKEEDKKVKLESDLDKAKEKKIN 60
T QRESFD+I EPV+ +TKV + Q RK+ E D K K++SDLD KK+N
Sbjct: 45 TIQRESFDNIGEPVTGNTKVSHPRTQNDNRKKI-DEGKLSRDTKDKVKSDLDGRDTKKVN 103
Query: 61 GSASVTVIKHESRKKNEKTVPNVKKQKHTVKSVNEETNEENE--KSESDDSLKEDEEEQE 118
GS S + H + + K +KH ++ E T +E++ + D+ ++ EE+E
Sbjct: 104 GSDSKSPSNHNHASEKKHGAAKEKNEKHK-ENKPEVTRKESQGSEESEDEDAEKGNEEEE 162
Query: 119 QEVVDGKEEESVRESEVNGETEGDVDLVQQENEQSVVTVEGESGRSRSTGKKRKVKGPVF 178
QEVVDG+E E +++ E ETEGD+ QE E + ++TGKK K KGP+F
Sbjct: 163 QEVVDGQEGE-LKDDE--AETEGDLGESDQEPEDRI--------EPKNTGKKFKRKGPLF 211
Query: 179 DPKAHYSWKLCSTRSKHNYIPCIDNESGFGKFQSYRHTERSCPRSHLMCLVPLPHAGYGS 238
DP AHYSWKLC RSK+NYIPCID ESG + Q YRH ERSCPR+ +CLVPLP +GY
Sbjct: 212 DPNAHYSWKLCRARSKYNYIPCIDIESGVARQQGYRHRERSCPRAPPLCLVPLPPSGYKP 271
Query: 239 PVSWPDSRLKILYKNVAHPKLAAYIKKHNWLVESGEYLTFPQNQSEFKGGVLHYLESIEE 298
PV WP+S KILYKNVAHPKL A+IKKH+WLVE GE+LTFPQN SE GGV+HYLESIEE
Sbjct: 272 PVHWPESNSKILYKNVAHPKLDAFIKKHDWLVEVGEFLTFPQNHSELNGGVIHYLESIEE 331
Query: 299 MVPDIEWGKNIRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVV 358
MVPDIEWGKNI VVLEIG S ASLL K V+TL++GLKDDLVDLAQVALERGFP +V
Sbjct: 332 MVPDIEWGKNIHVVLEIGCTYASLGASLLEKNVITLSLGLKDDLVDLAQVALERGFPTLV 391
Query: 359 SPLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEE 418
SP GNRRL FPSGVFDAIHC GCS +WH+ GKLLLEMNRILRP GYFILS+KHDSIEEE
Sbjct: 392 SPFGNRRLAFPSGVFDAIHCGGCSRSWHSKNGKLLLEMNRILRPGGYFILSSKHDSIEEE 451
Query: 419 EALTTLTASICWNILAHKTDEISEMGVKIYQKPESNDIYELRRKKNPPLCKENENPDAAW 478
EA+++LTASICWNILAHKTDE+SE+GVKIYQKPESNDI+ELRR KNPPLCKENENPDA W
Sbjct: 452 EAMSSLTASICWNILAHKTDEVSEVGVKIYQKPESNDIFELRR-KNPPLCKENENPDATW 510
Query: 479 YVPMKTCLHTIPSSIEQHGTEWPEEWPKRLETYPDWL-NDKEKLSSDTRHWKAIVDRSYL 537
YVPM TCLHT+P+SIEQ G EWPEEWPKRLET+P+WL NDKEKL +DT WKAIV++SYL
Sbjct: 511 YVPMTTCLHTVPTSIEQRGAEWPEEWPKRLETFPEWLSNDKEKLIADTNLWKAIVEKSYL 570
Query: 538 TGLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAPDTLPVIYDRGLVGIYHD 597
TG+GIDW +RNVMDMK+IYGGFAAA++QQK+WVMNV+PVHAPDTLP+I++RGLVG+YHD
Sbjct: 571 TGIGIDWPSVRNVMDMKAIYGGFAAAVSQQKVWVMNVIPVHAPDTLPIIFERGLVGVYHD 630
Query: 598 WCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVEILDPL 657
WCESFGTYPRSYDLLHADHLFSRLK+RC++PV+IVVEMDRILRPGGWAI+R+KV I++PL
Sbjct: 631 WCESFGTYPRSYDLLHADHLFSRLKNRCKEPVAIVVEMDRILRPGGWAIIREKVVIMNPL 690
Query: 658 EGILRSLHWEIRMTYAQDKEGILCAQKTMWRP 689
E IL+SL W+I+M+Y+ EGILCAQKT+WRP
Sbjct: 691 EEILKSLQWKIQMSYSHGDEGILCAQKTIWRP 722
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297850340|ref|XP_002893051.1| hypothetical protein ARALYDRAFT_889384 [Arabidopsis lyrata subsp. lyrata] gi|297338893|gb|EFH69310.1| hypothetical protein ARALYDRAFT_889384 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 929 bits (2401), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/692 (65%), Positives = 542/692 (78%), Gaps = 26/692 (3%)
Query: 1 TTQRESFDDIAEPVSADTKVISSKPQYTERKRQWHEIGKEEDKKVKLESDLDKAKEKKIN 60
QRESFDDIAEPVS+ TK S + +E + HE G+ E K+KE K
Sbjct: 52 NVQRESFDDIAEPVSSRTK---SAHEVSESSKL-HERGEVESGS--------KSKEGKKV 99
Query: 61 GSASVTVIKHESRKKNEKTVPNVKKQKHTVKSVNEET--NEENEKSESDDSLKEDEEEQE 118
G + + + +K++ + P+ KK ++E+E++ESD+S + ++E+ E
Sbjct: 100 GGGFIHKHETKKKKEHIVSHPHKKKDVPKPVVEEVVVKEDQEHEEAESDNSDQFNKEDGE 159
Query: 119 QEV-VDGKEEESVRESEVNGETEGDVDLVQQENEQSVVTVEGESGRSRSTGKKRKVKGPV 177
+ DG E GE++G+ D + V + E KKRK KGPV
Sbjct: 160 EGTESDGNE----------GESDGNGD-DSSVSVDEEVEEKNEEVTVTEISKKRKRKGPV 208
Query: 178 FDPKAHYSWKLCSTRSKHNYIPCIDNESGFGKFQSYRHTERSCPRSHLMCLVPLPHAGYG 237
FDPKA YSW+LC+TRSKHNY+PCIDN+ G+ QSYRH ERSCP+ +MCLVPLPH GY
Sbjct: 209 FDPKAEYSWRLCNTRSKHNYMPCIDNDGLIGRLQSYRHRERSCPKKPVMCLVPLPHDGYD 268
Query: 238 SPVSWPDSRLKILYKNVAHPKLAAYIKKHNWLVESGEYLTFPQNQSEFKGGVLHYLESIE 297
P+SWP+S+ KILYKNVAHPKLAAYIKKHNW+ E+GEYLTFPQNQ+ F G VL YLE I+
Sbjct: 269 PPISWPESKSKILYKNVAHPKLAAYIKKHNWVNETGEYLTFPQNQTAFNGNVLQYLEFIQ 328
Query: 298 EMVPDIEWGKNIRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAV 357
EMVPDIEWGKN+R+VL+IG +D SFVA+LL K+VLT+++GLKDDLVDLAQV LERGFP +
Sbjct: 329 EMVPDIEWGKNVRIVLDIGCSDSSFVAALLDKDVLTVSLGLKDDLVDLAQVTLERGFPTL 388
Query: 358 VSPLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEE 417
VS L +RRLPFPSGVFD IHC C I WH+HGGK LLEMNRILRP+GYFILS+ +D IE+
Sbjct: 389 VSSLASRRLPFPSGVFDTIHCAACRIHWHSHGGKHLLEMNRILRPNGYFILSSNNDKIED 448
Query: 418 EEALTTLTASICWNILAHKTDEISEMGVKIYQKPESNDIYELRRKKNPPLCKENENPDAA 477
+EA+T L ASICWNILAHKT+E SEMGV+IYQKPESNDIYELRRK NPPLC++NENPDAA
Sbjct: 449 DEAMTALIASICWNILAHKTEEASEMGVRIYQKPESNDIYELRRKINPPLCEDNENPDAA 508
Query: 478 WYVPMKTCLHTIPSSIEQHGTEWPEEWPKRLETYPDWLNDKEKLSSDTRHWKAIVDRSYL 537
WYVPMKTC+H IPS+IEQHG EWPEEWPKRLETYP+WL KEK DT HW A+V++SYL
Sbjct: 509 WYVPMKTCIHEIPSAIEQHGAEWPEEWPKRLETYPEWLTSKEKAIEDTNHWNAMVNKSYL 568
Query: 538 TGLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAPDTLPVIYDRGLVGIYHD 597
TGLGIDW +IRNVMDM +IYGGFAA+L +Q +WVMNVVPVH+PDTLP IY+RGL+GIYHD
Sbjct: 569 TGLGIDWLQIRNVMDMTAIYGGFAASLVKQNVWVMNVVPVHSPDTLPFIYERGLLGIYHD 628
Query: 598 WCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVEILDPL 657
WCESFGTYPRSYDLLHADHLFSRLK+RC+QP SIVVEMDR+ RPGGW +VRDKVEIL+PL
Sbjct: 629 WCESFGTYPRSYDLLHADHLFSRLKNRCKQPASIVVEMDRLTRPGGWVVVRDKVEILEPL 688
Query: 658 EGILRSLHWEIRMTYAQDKEGILCAQKTMWRP 689
E ILRSLHWEIRMTYAQDKEG+LCAQKT+WRP
Sbjct: 689 EEILRSLHWEIRMTYAQDKEGMLCAQKTLWRP 720
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449516411|ref|XP_004165240.1| PREDICTED: LOW QUALITY PROTEIN: probable methyltransferase PMT28-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 920 bits (2378), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/692 (67%), Positives = 552/692 (79%), Gaps = 17/692 (2%)
Query: 1 TTQRESFDDIAEPVSADTKVISSKPQYTERKRQWHEIGKEEDKKVKLESDLDKAKEKKIN 60
T QRESFD+I EPV+ +TKV + Q RK+ E D K K++SDLD KK+N
Sbjct: 45 TIQRESFDNIGEPVTGNTKVSHPRTQNDNRKKI-DEGKLSRDTKDKVKSDLDGRDTKKVN 103
Query: 61 GSASVTVIKHESRKKNEKTVPNVKKQKHTVKSVNEETNEENE--KSESDDSLKEDEEEQE 118
GS S + H + + K +KH ++ E T +E++ + D+ ++ EE+E
Sbjct: 104 GSDSKSPSNHNHASEKKHGAAKEKNEKHK-ENKPEVTRKESQGSEESEDEDAEKGNEEEE 162
Query: 119 QEVVDGKEEESVRESEVNGETEGDVDLVQQENEQSVVTVEGESGRSRSTGKKRKVKGPVF 178
QEVVDG+E E +++ E ETEGD+ QE E + ++ +K K KGP+F
Sbjct: 163 QEVVDGQEGE-LKDDE--AETEGDLGESDQEPEDRI--------EPKNXREKFKRKGPLF 211
Query: 179 DPKAHYSWKLCSTRSKHNYIPCIDNESGFGKFQSYRHTERSCPRSHLMCLVPLPHAGYGS 238
DP AHYSWKLC RSK+NYIPCID ESG + Q YRH ERSCPR+ +CLVPLP +GY
Sbjct: 212 DPNAHYSWKLCRARSKYNYIPCIDIESGVARQQGYRHRERSCPRAPPLCLVPLPPSGYKP 271
Query: 239 PVSWPDSRLKILYKNVAHPKLAAYIKKHNWLVESGEYLTFPQNQSEFKGGVLHYLESIEE 298
PV WP+S KILYKNVAHPKL A+IKKH+WLVE GE+LTFPQN SE GGV+HYLESIEE
Sbjct: 272 PVHWPESNSKILYKNVAHPKLDAFIKKHDWLVEVGEFLTFPQNHSELNGGVIHYLESIEE 331
Query: 299 MVPDIEWGKNIRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVV 358
MVPDIEWGKNI VVLEIG S ASLL K V+TL++GLKDDLVDLAQVALERGFP +V
Sbjct: 332 MVPDIEWGKNIHVVLEIGCTYASLGASLLEKNVITLSLGLKDDLVDLAQVALERGFPTLV 391
Query: 359 SPLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEE 418
SP GNRRL FPSGVFDAIHC GCS +WH+ GKLLLEMNRILRP GYFILS+KHDSIEEE
Sbjct: 392 SPFGNRRLAFPSGVFDAIHCGGCSRSWHSKNGKLLLEMNRILRPGGYFILSSKHDSIEEE 451
Query: 419 EALTTLTASICWNILAHKTDEISEMGVKIYQKPESNDIYELRRKKNPPLCKENENPDAAW 478
EA+++LTASICWNILAHKTDE+SE+GVKIYQKPESNDI+ELRR KNPPLCKEN NPDA W
Sbjct: 452 EAMSSLTASICWNILAHKTDEVSEVGVKIYQKPESNDIFELRR-KNPPLCKENXNPDATW 510
Query: 479 YVPMKTCLHTIPSSIEQHGTEWPEEWPKRLETYPDWL-NDKEKLSSDTRHWKAIVDRSYL 537
YVPM TCLHT+P+SIEQ G EWPEEWPKRLET+P+WL NDKEKL +DT WKAIV++SYL
Sbjct: 511 YVPMTTCLHTVPTSIEQRGAEWPEEWPKRLETFPEWLSNDKEKLIADTNLWKAIVEKSYL 570
Query: 538 TGLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAPDTLPVIYDRGLVGIYHD 597
TG+GIDW +RNVMDMK+IYGGFAAA++QQK+WVMNV+PVHAPDTLP+I++RGLVG+YHD
Sbjct: 571 TGIGIDWPSVRNVMDMKAIYGGFAAAVSQQKVWVMNVIPVHAPDTLPIIFERGLVGVYHD 630
Query: 598 WCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVEILDPL 657
WCESFGTYPRSYDLLHADHLFSRLK+RC++PV+IVVEMDRILRPGGWAI+R+KV I++PL
Sbjct: 631 WCESFGTYPRSYDLLHADHLFSRLKNRCKEPVAIVVEMDRILRPGGWAIIREKVVIMNPL 690
Query: 658 EGILRSLHWEIRMTYAQDKEGILCAQKTMWRP 689
E IL+SL W+I+M+Y+ EGILCAQKT+WRP
Sbjct: 691 EEILKSLQWKIQMSYSHGDEGILCAQKTIWRP 722
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147771522|emb|CAN75692.1| hypothetical protein VITISV_038533 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 830 bits (2143), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/679 (62%), Positives = 506/679 (74%), Gaps = 54/679 (7%)
Query: 1 TTQRESFDDIAEPVSADTKVISSKPQYTERKRQWHEIGKEEDKKVKLESDLDKAKEKKIN 60
T+QR SF DI EPV T V SS+ + + + E+ +K VK ESDL++ EKK++
Sbjct: 571 TSQRSSFGDINEPVPGSTGVGSSRTGLKKNEPEKTELSGGSNK-VKFESDLEEKDEKKLD 629
Query: 61 GSASVTVIKHESRKKNEKTVPNVKKQKHTVKSVNEETNEENEKSE-SDDSLKEDEEEQEQ 119
GS ++ + S ++K N K E +++N SE S++ E E+E+ +
Sbjct: 630 GSVTLAANGNNSTNIDKKEEANEGK---------EGIDKQNHGSEGSENKESEKEKEEGE 680
Query: 120 EVVDGKEEESVRESEVNGETEGDVDLVQQENEQSVVTVEGESGRSRSTGKKRKVKGPVFD 179
D KEE RE E N + + D D E+ V VE ESG S+STGKK+K GP+FD
Sbjct: 681 VGGDDKEEAVDREGEANEDVDADGDWAVTVEEEPVGKVEEESGGSKSTGKKKKRNGPLFD 740
Query: 180 PKAHYSWKLCSTRSKHNYIPCIDNESGFGKFQSYRHTERSCPRSHLMCLVPLPHAGYGSP 239
KA Y+WKLCSTRSKHNYIPCIDNESG G+ QSYRH ERSCPR+ MCL+PLP GY SP
Sbjct: 741 LKAQYTWKLCSTRSKHNYIPCIDNESGTGRLQSYRHRERSCPRTPPMCLIPLPAKGYSSP 800
Query: 240 VSWPDSRLKILYKNVAHPKLAAYIKKHNWLVESGEYLTFPQNQSEFKGGVLHYLESIEEM 299
V WP+S+LK+ E F + S+ + Y+
Sbjct: 801 VPWPESKLKV--------------------CEELRLSLFGSSVSDEAFVISFYILQ---- 836
Query: 300 VPDIEWGKNIRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVVS 359
D+SF A LL KEVLTL++GLKDDLVDLAQVALERGFPAVVS
Sbjct: 837 -------------------DVSFGAFLLDKEVLTLSLGLKDDLVDLAQVALERGFPAVVS 877
Query: 360 PLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEE 419
P G RRLPFPSGVFDAIHC GC+I WH++GGKLLLEMNRILRP GYFILS+KHD+IE+EE
Sbjct: 878 PFGTRRLPFPSGVFDAIHCGGCNIAWHSNGGKLLLEMNRILRPGGYFILSSKHDNIEDEE 937
Query: 420 ALTTLTASICWNILAHKTDEISEMGVKIYQKPESNDIYELRRKKNPPLCKENENPDAAWY 479
+T+LTASICWN+LAHKTDEISE+GVKIYQKPESNDIYELRRKKNPP+CKE+E PDAAWY
Sbjct: 938 EMTSLTASICWNVLAHKTDEISEVGVKIYQKPESNDIYELRRKKNPPICKEDEKPDAAWY 997
Query: 480 VPMKTCLHTIPSSIEQHGTEWPEEWPKRLETYPDWLNDKEKLSSDTRHWKAIVDRSYLTG 539
VPMKTCLHTIP++IE+ GTEWPEEWPKRL+T+PDWL +++KL +D+ HWKAIV +SYLTG
Sbjct: 998 VPMKTCLHTIPAAIEERGTEWPEEWPKRLDTFPDWLENRDKLIADSEHWKAIVSKSYLTG 1057
Query: 540 LGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAPDTLPVIYDRGLVGIYHDWC 599
+GIDWS + N++DMKSIYGGFAAAL+ QK+WVMNVVPVHAPDTLP+IY+RGLVGIYHDWC
Sbjct: 1058 MGIDWSNVHNILDMKSIYGGFAAALSDQKVWVMNVVPVHAPDTLPIIYERGLVGIYHDWC 1117
Query: 600 ESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLEG 659
ESFGTYPRSYDLLHADH+FSRLK+RC+QPV+IVVEMDRILRPGGWAI+RDKVEILDPLEG
Sbjct: 1118 ESFGTYPRSYDLLHADHMFSRLKNRCKQPVAIVVEMDRILRPGGWAIIRDKVEILDPLEG 1177
Query: 660 ILRSLHWEIRMTYAQDKEG 678
ILRS+HWEIRMT+AQDKEG
Sbjct: 1178 ILRSMHWEIRMTFAQDKEG 1196
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 689 | ||||||
| TAIR|locus:2016392 | 724 | AT1G19430 [Arabidopsis thalian | 0.809 | 0.770 | 0.733 | 1.1e-249 | |
| TAIR|locus:2160806 | 829 | AT5G64030 [Arabidopsis thalian | 0.805 | 0.669 | 0.467 | 3.1e-153 | |
| TAIR|locus:2080823 | 895 | AT3G51070 [Arabidopsis thalian | 0.775 | 0.596 | 0.453 | 4.3e-147 | |
| TAIR|locus:2013628 | 770 | AT1G29470 [Arabidopsis thalian | 0.806 | 0.722 | 0.458 | 6.7e-147 | |
| TAIR|locus:2040864 | 770 | AT2G34300 [Arabidopsis thalian | 0.955 | 0.854 | 0.400 | 1.1e-142 | |
| TAIR|locus:2063078 | 589 | AT2G40280 [Arabidopsis thalian | 0.715 | 0.837 | 0.477 | 1.9e-124 | |
| TAIR|locus:2063947 | 694 | AT2G39750 [Arabidopsis thalian | 0.741 | 0.736 | 0.389 | 8.7e-95 | |
| TAIR|locus:2153704 | 682 | AT5G06050 [Arabidopsis thalian | 0.676 | 0.683 | 0.405 | 4.8e-94 | |
| TAIR|locus:2195955 | 655 | AT1G77260 [Arabidopsis thalian | 0.682 | 0.717 | 0.399 | 1.5e-92 | |
| TAIR|locus:2018329 | 623 | AT1G04430 [Arabidopsis thalian | 0.690 | 0.764 | 0.382 | 2.6e-86 |
| TAIR|locus:2016392 AT1G19430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2303 (815.8 bits), Expect = 1.1e-249, Sum P(2) = 1.1e-249
Identities = 412/562 (73%), Positives = 473/562 (84%)
Query: 132 ESEVN-GETEGDVDLVQQENEQSV---VTVEGESGRSRSTGKKRKVKGPVFDPKAHYSWK 187
ES+ N GE++G+ D ++ SV V + E KKRK KGPVFDPKA YSW+
Sbjct: 163 ESDGNEGESDGNGDGSVDDSSASVDEEVEEKNEEVTVNEISKKRKRKGPVFDPKAEYSWR 222
Query: 188 LCSTRSKHNYIPCIDNESGFGKFQSYRHTERSCPRSHLMCLVPLPHAGYGSPVSWPDSRL 247
LC+TRSKHNY+PCIDN+ G+ QSYRH ERSCP+ +MCLVPLPH GY PVSWP+S+
Sbjct: 223 LCNTRSKHNYMPCIDNDGLIGRLQSYRHRERSCPKKPVMCLVPLPHDGYDPPVSWPESKS 282
Query: 248 KILYKNVAHPKLAAYIKKHNWLVESGEYLTFPQNQSEFKGGVLHYLESIEEMVPDIEWGK 307
KILYKNVAHPKLAAYIKKHNW+ E+GEYL+FPQNQ+ F G VL YLE I+EMVPDIEWGK
Sbjct: 283 KILYKNVAHPKLAAYIKKHNWVNETGEYLSFPQNQTTFNGNVLQYLEFIQEMVPDIEWGK 342
Query: 308 NIRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLP 367
N+R+VL+IG +D SFVA+LL K+VLT+++GLKDDLVDLAQVALERGFP VS L +RRLP
Sbjct: 343 NVRIVLDIGCSDSSFVAALLDKDVLTVSLGLKDDLVDLAQVALERGFPTFVSSLASRRLP 402
Query: 368 FPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIXXXXXXXXXXXS 427
FPSGVFD IHC C + WH+HGGKLLLEMNRILRP+GYFILS+ +D I S
Sbjct: 403 FPSGVFDTIHCAACGVHWHSHGGKLLLEMNRILRPNGYFILSSNNDKIEDDEAMTALTAS 462
Query: 428 ICWNILAHKTDEISEMGVKIYQKPESNDIYELRRKKNPPLCKENENPDAAWYVPMKTCLH 487
ICWNILAHKT+E SEMGV+IYQKPESNDIYELRRKKNPPLC++NENPDAAWYVPMKTC++
Sbjct: 463 ICWNILAHKTEEASEMGVRIYQKPESNDIYELRRKKNPPLCEDNENPDAAWYVPMKTCIY 522
Query: 488 TIPSSIEQHGTEWPEEWPKRLETYPDWLNDKEKLSSDTRHWKAIVDRSYLTGLGIDWSKI 547
IPS+IEQHG EWPEEWPKRLETYP+WL KEK DT HW A+V++SYLTGLGIDW I
Sbjct: 523 EIPSAIEQHGAEWPEEWPKRLETYPEWLTSKEKAMEDTNHWNAMVNKSYLTGLGIDWLHI 582
Query: 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAPDTLPVIYDRGLVGIYHDWCESFGTYPR 607
RNVMDM +IYGGF A+L +Q +WVMNVVPVH+PDTLP IY+RGL+GIYHDWCE FGTYPR
Sbjct: 583 RNVMDMTAIYGGFGASLVKQNVWVMNVVPVHSPDTLPFIYERGLLGIYHDWCEPFGTYPR 642
Query: 608 SYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGILRSLHWE 667
SYDLLHADHLFSRLK+RC+QP SIVVEMDR+ RPGGW +VRDKVEIL+PLE ILRSLHWE
Sbjct: 643 SYDLLHADHLFSRLKNRCKQPASIVVEMDRLTRPGGWVVVRDKVEILEPLEEILRSLHWE 702
Query: 668 IRMTYAQDKEGILCAQKTMWRP 689
IRMTYAQDKEG+LCAQKT+WRP
Sbjct: 703 IRMTYAQDKEGMLCAQKTLWRP 724
|
|
| TAIR|locus:2160806 AT5G64030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1457 (517.9 bits), Expect = 3.1e-153, Sum P(2) = 3.1e-153
Identities = 272/582 (46%), Positives = 369/582 (63%)
Query: 131 RESEVNGETEGDVDL--VQQE--NEQSVVTVEGESGRSRSTGKKRKVKGPVFDPKAHYSW 186
+E + ET GD+ Q E NE + + + S +K KG K Y W
Sbjct: 241 QEGQSKNETSGDLSPPGAQLELLNETTAQNGSFSTQATESKNEKEAQKGS--GDKLDYKW 298
Query: 187 KLCSTRSKHNYIPCIDNESGFGKFQS---YRHTERSCPRSHLMCLVPLPHAGYGSPVSWP 243
LC+T + +YIPC+DN S Y H ER CP S CLVPLP GY P+ WP
Sbjct: 299 ALCNTTAGPDYIPCLDNVQAIRSLPSTKHYEHRERHCPDSPPTCLVPLPD-GYKRPIEWP 357
Query: 244 DSRLKILYKNVAHPKLAAYIKKHNWLVESGEYLTFPQNQSEFKGGVLHYLESIEEMVPDI 303
SR KI Y NV H KLA Y NW+ +GEYLTFP ++FK G LHY++ I+E VP I
Sbjct: 358 KSREKIWYTNVPHTKLAEYKGHQNWVKVTGEYLTFPGGGTQFKHGALHYIDFIQESVPAI 417
Query: 304 EWGKNIRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGN 363
WGK RVVL++G SF L ++V+T+++ KD+ Q ALERG PA+ + +G
Sbjct: 418 AWGKRSRVVLDVGCGVASFGGFLFDRDVITMSLAPKDEHEAQVQFALERGIPAISAVMGT 477
Query: 364 RRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST------KHDSIXX 417
RLPFP VFD +HC C + WH GGKLLLE+NR+LRP G+F+ S K + +
Sbjct: 478 TRLPFPGRVFDIVHCARCRVPWHIEGGKLLLELNRVLRPGGFFVWSATPVYQKKTEDVEI 537
Query: 418 XXXXXXXXXSICWNILAHKTDEISEMGVKIYQKPESNDIYELRRKKNPPLCKENENPDAA 477
+CW +++ D I+ +GV Y+KP SN+ Y+ R + PP+C ++++P+A+
Sbjct: 538 WKAMSELIKKMCWELVSINKDTINGVGVATYRKPTSNECYKNRSEPVPPICADSDDPNAS 597
Query: 478 WYVPMKTCLHTIPSSIEQHGTEWPEEWPKRLETYPDWLNDK----------EKLSSDTRH 527
W VP++ C+HT P Q G++WPE+WP RLE P WL+ E S+D H
Sbjct: 598 WKVPLQACMHTAPEDKTQRGSQWPEQWPARLEKAPFWLSSSQTGVYGKAAPEDFSADYEH 657
Query: 528 WKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAPDTLPVIY 587
WK +V +SYL GLGI+W+ +RNVMDM+++YGGFAAAL K+WVMNVVP+ +PDTL +IY
Sbjct: 658 WKRVVTKSYLNGLGINWASVRNVMDMRAVYGGFAAALRDLKVWVMNVVPIDSPDTLAIIY 717
Query: 588 DRGLVGIYHDWCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIV 647
+RGL GIYHDWCESF TYPRSYDLLHADHLFS+LK RC +++ E+DR+LRP G IV
Sbjct: 718 ERGLFGIYHDWCESFSTYPRSYDLLHADHLFSKLKQRCNL-TAVIAEVDRVLRPEGKLIV 776
Query: 648 RDKVEILDPLEGILRSLHWEIRMTYAQDKEGILCAQKTMWRP 689
RD E + +EG+++++ WE+RMTY+++KEG+L QK++WRP
Sbjct: 777 RDDAETIQQVEGMVKAMKWEVRMTYSKEKEGLLSVQKSIWRP 818
|
|
| TAIR|locus:2080823 AT3G51070 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1397 (496.8 bits), Expect = 4.3e-147, Sum P(3) = 4.3e-147
Identities = 255/562 (45%), Positives = 367/562 (65%)
Query: 148 QENEQSVVTVEGESGRSRSTGKKRKVKGPVFDPKAHYSWKLCSTRSKHNYIPCIDNESGF 207
Q++ +S T E + + R T + V+ + D A W LC+ + +YIPC+DNE
Sbjct: 338 QKSWKSQAT-ESKDEKQRQTSESNTVER-IMDGNA---WVLCNATAGTDYIPCLDNEEAI 392
Query: 208 GKFQSYRH---TERSCPRSHLMCLVPLPHAGYGSPVSWPDSRLKILYKNVAHPKLAAYIK 264
K +S RH ER CP CLVPLP GY + WP+SR KI Y NV H KLA +K
Sbjct: 393 MKLRSRRHFEHRERHCPEDPPTCLVPLPE-GYKEAIKWPESRDKIWYHNVPHTKLAE-VK 450
Query: 265 KH-NWLVESGEYLTFPQNQSEFKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFV 323
H NW+ +GE+LTFP ++F G LHY++ +++ + +I WGK RV+L++G SF
Sbjct: 451 GHQNWVKVTGEFLTFPGGGTQFIHGALHYIDFLQQSLKNIAWGKRTRVILDVGCGVASFG 510
Query: 324 ASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSI 383
L ++V+ +++ KD+ Q ALER PA+ + +G++RLPFPS VFD IHC C +
Sbjct: 511 GFLFERDVIAMSLAPKDEHEAQVQFALERKIPAISAVMGSKRLPFPSRVFDLIHCARCRV 570
Query: 384 TWHAHGGKLLLEMNRILRPSGYFILSTK------HDSIXXXXXXXXXXXSICWNILAHKT 437
WH GG LLLE+NR+LRP GYF+ S + + S+CW ++
Sbjct: 571 PWHNEGGMLLLELNRMLRPGGYFVWSATPVYQKLEEDVQIWKEMSALTKSLCWELVTINK 630
Query: 438 DEISEMGVKIYQKPESNDIYELRRKKNPPLCKENENPDAAWYVPMKTCLHTIPSSIEQHG 497
D+++ +G IYQKP +N+ YE R+ PPLCK N++ +AAWYVP++ C+H +P+++ + G
Sbjct: 631 DKLNGIGAAIYQKPATNECYEKRKHNKPPLCKNNDDANAAWYVPLQACMHKVPTNVVERG 690
Query: 498 TEWPEEWPKRLETYPDWLNDKEK----------LSSDTRHWKAIVDRSYLTGLGIDWSKI 547
++WP WP+RL+T P WLN + ++D HWK +V + Y+ +GI WS +
Sbjct: 691 SKWPVNWPRRLQTPPYWLNSSQMGIYGKPAPRDFTTDYEHWKHVVSKVYMNEIGISWSNV 750
Query: 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAPDTLPVIYDRGLVGIYHDWCESFGTYPR 607
RNVMDM+++YGGFAAAL ++WVMNVV +++PDTLP+IY+RGL GIYHDWCESF TYPR
Sbjct: 751 RNVMDMRAVYGGFAAALKDLQVWVMNVVNINSPDTLPIIYERGLFGIYHDWCESFSTYPR 810
Query: 608 SYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGILRSLHWE 667
SYDLLHADHLFS+L++RC V ++ E+DRI+RPGG IVRD+ ++ +E +L+SLHW+
Sbjct: 811 SYDLLHADHLFSKLRTRCNL-VPVMAEVDRIVRPGGKLIVRDESNVIREVENMLKSLHWD 869
Query: 668 IRMTYAQDKEGILCAQKTMWRP 689
+ +T+++ +EGIL AQK WRP
Sbjct: 870 VHLTFSKHQEGILSAQKGFWRP 891
|
|
| TAIR|locus:2013628 AT1G29470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1417 (503.9 bits), Expect = 6.7e-147, Sum P(2) = 6.7e-147
Identities = 267/582 (45%), Positives = 364/582 (62%)
Query: 131 RESEVN-GETEGDVDL---VQQENEQSVVTVEGESGRSRSTGKKRKVKGPVFDPKAHYSW 186
++SE N GETE + V +Q+ +T E +G + + + + + W
Sbjct: 181 KKSEENAGETEESTEKSKDVFPAGDQAEITKESSTGSGAWSTQLVESQNEKKAQVSSIKW 240
Query: 187 KLCSTRSKHNYIPCIDNESGFGKFQS---YRHTERSCPRSHLMCLVPLPHAGYGSPVSWP 243
K+C+ + +YIPC+DN K S Y H ER CP CLV LP GY + WP
Sbjct: 241 KVCNVTAGPDYIPCLDNWQAIRKLHSTKHYEHRERHCPEESPRCLVSLPE-GYKRSIKWP 299
Query: 244 DSRLKILYKNVAHPKLAAYIKKH-NWLVESGEYLTFPQNQSEFKGGVLHYLESIEEMVPD 302
SR KI Y N+ H KLA +K H NW+ SGEYLTFP ++FK G LHY++ ++E PD
Sbjct: 300 KSREKIWYTNIPHTKLAE-VKGHQNWVKMSGEYLTFPGGGTQFKNGALHYIDFLQESYPD 358
Query: 303 IEWGKNIRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLG 362
I WG RV+L++G SF L ++VL L+ KD+ Q ALERG PA+ + +G
Sbjct: 359 IAWGNRTRVILDVGCGVASFGGYLFDRDVLALSFAPKDEHEAQVQFALERGIPAMSNVMG 418
Query: 363 NRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK------HDSIX 416
+RLPFP VFD IHC C + WH GGKLLLE+NR LRP G+F+ S + +
Sbjct: 419 TKRLPFPGSVFDLIHCARCRVPWHIEGGKLLLELNRALRPGGFFVWSATPVYRKTEEDVG 478
Query: 417 XXXXXXXXXXSICWNILAHKTDEISEMGVKIYQKPESNDIYELRRKKNPPLCKENENPDA 476
++CW ++ K DE++E+G IYQKP SN Y R + PPLCK++++ +A
Sbjct: 479 IWKAMSKLTKAMCWELMTIKKDELNEVGAAIYQKPMSNKCYNERSQNEPPLCKDSDDQNA 538
Query: 477 AWYVPMKTCLHTIPSSIEQHGTEWPEEWPKRLETYPDWLNDKEKL---------SSDTRH 527
AW VP++ C+H + + G WPE WP+R+ET P WL+ +E + ++D
Sbjct: 539 AWNVPLEACIHKVTEDSSKRGAVWPESWPERVETVPQWLDSQEGVYGKPAQEDFTADHER 598
Query: 528 WKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAPDTLPVIY 587
WK IV +SYL G+GIDWS +RNVMDM+++YGGFAAAL K+WVMNVVP+ +PDTLP+IY
Sbjct: 599 WKTIVSKSYLNGMGIDWSYVRNVMDMRAVYGGFAAALKDLKLWVMNVVPIDSPDTLPIIY 658
Query: 588 DRGLVGIYHDWCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIV 647
+RGL GIYHDWCESF TYPR+YDLLHADHLFS LK RC V ++ E+DRILRP G IV
Sbjct: 659 ERGLFGIYHDWCESFSTYPRTYDLLHADHLFSSLKKRCNL-VGVMAEVDRILRPQGTFIV 717
Query: 648 RDKVEILDPLEGILRSLHWEIRMTYAQDKEGILCAQKTMWRP 689
RD +E + +E +++S+ W +RMT+++D EG+L QK+ WRP
Sbjct: 718 RDDMETIGEIEKMVKSMKWNVRMTHSKDGEGLLSVQKSWWRP 759
|
|
| TAIR|locus:2040864 AT2G34300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1395 (496.1 bits), Expect = 1.1e-142, P = 1.1e-142
Identities = 276/689 (40%), Positives = 394/689 (57%)
Query: 27 YTERKRQWHEIGKEEDKKVKLESDLDKAKEKKINGSASVTVIKHESRKKNEKTVPNVKKQ 86
+++ K + +E E ++ VK +S+ + A+ ++N S+ E RK+++ + +
Sbjct: 76 FSDEKNEENEAATENNQ-VKTDSE-NSAEGNQVNESSGEKTEAGEERKESDDNNGDGDGE 133
Query: 87 KHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVRESEVNGETEGDVDLV 146
K SE TE V
Sbjct: 134 KEKNVKEVGSESDETTQKEKTQLEESTEENKSEDGNGNEEKAEENASETEESTEKSSKEV 193
Query: 147 QQENEQSVVTVEGESGRS-------RSTGKKRKVKGPVFDPKAHYSWKLCSTRSKHNYIP 199
+Q+ +T E +G S +K+ + + ++ Y WK C+ + +YIP
Sbjct: 194 FPAGDQAEITKESSTGDGAWSTQLVESQNEKKAQQSSISKDQSSYGWKTCNVTAGPDYIP 253
Query: 200 CIDNESGFGKFQS---YRHTERSCPRSHLMCLVPLPHAGYGSPVSWPDSRLKILYKNVAH 256
C+DN K + Y H ER CP CLV LP GY + WP SR KI Y NV H
Sbjct: 254 CLDNWQAIKKLHTTMHYEHRERHCPEESPHCLVSLPD-GYKRSIKWPKSREKIWYNNVPH 312
Query: 257 PKLAAYIKKH-NWLVESGEYLTFPQNQSEFKGGVLHYLESIEEMVPDIEWGKNIRVVLEI 315
KLA IK H NW+ SGE+LTFP ++FK G LHY++ I++ P I WG RV+L++
Sbjct: 313 TKLAE-IKGHQNWVKMSGEHLTFPGGGTQFKNGALHYIDFIQQSHPAIAWGNRTRVILDV 371
Query: 316 GSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDA 375
G SF L ++VL L+ KD+ Q ALERG PA+++ +G +RLPFP VFD
Sbjct: 372 GCGVASFGGYLFERDVLALSFAPKDEHEAQVQFALERGIPAMLNVMGTKRLPFPGSVFDL 431
Query: 376 IHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST-----KHDSIXXX-XXXXXXXXSIC 429
IHC C + WH GGKLLLE+NR LRP G+F+ S K++ ++C
Sbjct: 432 IHCARCRVPWHIEGGKLLLELNRALRPGGFFVWSATPVYRKNEEDSGIWKAMSELTKAMC 491
Query: 430 WNILAHKTDEISEMGVKIYQKPESNDIYELRRKKNPPLCKENENPDAAWYVPMKTCLHTI 489
W ++ K D+++E+G IYQKP SN Y R + PPLCK++++ +AAW VP++ C+H +
Sbjct: 492 WKLVTIKKDKLNEVGAAIYQKPTSNKCYNKRPQNEPPLCKDSDDQNAAWNVPLEACMHKV 551
Query: 490 PSSIEQHGTEWPEEWPKRLETYPDWLNDKEKL---------SSDTRHWKAIVDRSYLTGL 540
+ G WP WP+R+ET P+WL+ +E + ++D WK IV ++YL +
Sbjct: 552 TEDSSKRGAVWPNMWPERVETAPEWLDSQEGVYGKPAPEDFTADQEKWKTIVSKAYLNDM 611
Query: 541 GIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAPDTLPVIYDRGLVGIYHDWCE 600
GIDWS +RNVMDM+++YGGFAAAL K+WVMNVVPV APDTLP+IY+RGL GIYHDWCE
Sbjct: 612 GIDWSNVRNVMDMRAVYGGFAAALKDLKLWVMNVVPVDAPDTLPIIYERGLFGIYHDWCE 671
Query: 601 SFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGI 660
SF TYPR+YDLLHADHLFS L+ RC VS++ E+DRILRP G I+RD +E L +E +
Sbjct: 672 SFNTYPRTYDLLHADHLFSTLRKRCNL-VSVMAEIDRILRPQGTFIIRDDMETLGEVEKM 730
Query: 661 LRSLHWEIRMTYAQDKEGILCAQKTMWRP 689
++S+ W+++MT ++D EG+L +K+ WRP
Sbjct: 731 VKSMKWKVKMTQSKDNEGLLSIEKSWWRP 759
|
|
| TAIR|locus:2063078 AT2G40280 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1223 (435.6 bits), Expect = 1.9e-124, P = 1.9e-124
Identities = 246/515 (47%), Positives = 318/515 (61%)
Query: 186 WKLCSTRSKHNYIPCIDNESGFGKFQSYRHTE---RSCPRSHLMCLVPLPHAGYGSPVSW 242
W LC +YIPC+DN + + +S RH E R CP CL+PLP Y PV W
Sbjct: 80 WDLCKGAESVDYIPCLDNYAAIKQLKSRRHMEHRERHCPEPSPKCLLPLPD-NYKPPVPW 138
Query: 243 PDSRLKILYKNVAHPKLAAYIKKHNWLVESGEYLTFPQNQSEFKGGVLHYLESIEEMVPD 302
P SR I Y NV HPKL Y K+ NW+ + GE+L FP ++FK GV HY+E IE+ +P
Sbjct: 139 PKSRDMIWYDNVPHPKLVEYKKEQNWVKKEGEFLVFPGGGTQFKFGVTHYVEFIEKALPS 198
Query: 303 IEWGKNIRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLG 362
I+WGKNIRVVL++G SF SLL K+V+T++ KD+ Q ALERG PA +S +G
Sbjct: 199 IKWGKNIRVVLDVGCGVASFGGSLLDKDVITMSFAPKDEHEAQIQFALERGIPATLSVIG 258
Query: 363 NRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK---HDSIXXXX 419
++L FPS FD IHC C + W A GGK LLE+NR+LRP G+FI S D+
Sbjct: 259 TQQLTFPSNAFDLIHCARCRVHWDADGGKPLLELNRVLRPGGFFIWSATPVYRDNDRDSR 318
Query: 420 X---XXXXXXSICWNILAHKTDEISEMGVKIYQKPESNDIYELRRKKNPPLCKENENPDA 476
SICW ++ KT + S +G+ IYQKP S Y R ++PPLC + E +
Sbjct: 319 IWNEMVSLTKSICWKVVT-KTVDSSGIGLVIYQKPTSESCYNKRSTQDPPLCDKKE-ANG 376
Query: 477 AWYVPMKTCLHTIPSSIEQHGTEWPEEWPKRLETY-PDWLNDK-EKLSSDTRHWKAIVDR 534
+WYVP+ CL +PS Q WPE WPKRL + P ++ K E L DT W A V
Sbjct: 377 SWYVPLAKCLSKLPSGNVQ---SWPELWPKRLVSVKPQSISVKAETLKKDTEKWSASVSD 433
Query: 535 SYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAPDTLPVIYDRGLVGI 594
YL L ++WS +RNVMDM + +GGFAAAL +WVMNVVPV PDTL V+YDRGL+G+
Sbjct: 434 VYLKHLAVNWSTVRNVMDMNAGFGGFAAALINLPLWVMNVVPVDKPDTLSVVYDRGLIGV 493
Query: 595 YHDWCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVEIL 654
YHDWCES TYPR+YDLLH+ L L RC + V +V E+DRI+RPGG+ +V+D +E +
Sbjct: 494 YHDWCESVNTYPRTYDLLHSSFLLGDLTQRC-EIVQVVAEIDRIVRPGGYLVVQDNMETI 552
Query: 655 DPLEGILRSLHWEIRMTYAQDKEGILCAQKTMWRP 689
LE IL SLHW ++ Y +D+ L +K WRP
Sbjct: 553 MKLESILGSLHWSTKI-Y-EDR--FLVGRKGFWRP 583
|
|
| TAIR|locus:2063947 AT2G39750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
Identities = 218/559 (38%), Positives = 305/559 (54%)
Query: 134 EVNGETEGDVDLVQQENEQSVVTVEGESGRSRSTGKKRKVKGPVFDPKAHYSWK---LCS 190
+ NG D ++ + E++ TVE ++ + K G D KA K +C
Sbjct: 131 DANGVMSDDFEVGEVESD----TVEDWGNQTEIV--EAKSDG---DSKARVRIKKFGMCP 181
Query: 191 TRSKHNYIPCIDNESGFGKFQSYRHTER---SCPRSH--LMCLVPLPHAGYGSPVSWPDS 245
S YIPC+DN K +S ER CP L CLVP P GY P+ WP S
Sbjct: 182 -ESMREYIPCLDNTDVIKKLKSTERGERFERHCPEKGKGLNCLVP-PPKGYRQPIPWPKS 239
Query: 246 RLKILYKNVAHPKLAAYIKKHNWLVESGEYLTFPQNQSEFKGGVLHYLESIEEMVPDIEW 305
R ++ + NV H +L NW+ FP ++F G YL+ + +MV DI +
Sbjct: 240 RDEVWFSNVPHTRLVEDKGGQNWISRDKNKFKFPGGGTQFIHGADQYLDQMSKMVSDITF 299
Query: 306 GKNIRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRR 365
GK+IRV +++G SF A LL+++V+T++V KD + Q ALERG PA+ + RR
Sbjct: 300 GKHIRVAMDVGCGVASFGAYLLSRDVMTMSVAPKDVHENQIQFALERGVPAMAAAFATRR 359
Query: 366 LPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST----KHDSIXXX--X 419
L +PS FD IHC C I W G LLLE+NR+LR GYF + KH+
Sbjct: 360 LLYPSQAFDLIHCSRCRINWTRDDGILLLEINRMLRAGGYFAWAAQPVYKHEPALEEQWT 419
Query: 420 XXXXXXXSICWNILAHKTDEISEMGVKIYQKPESNDIYELRRK-KNPPLCKENENPDAAW 478
S+CW ++ E V I+QKP +ND Y R PPLC E+++PD W
Sbjct: 420 EMLNLTISLCWKLVK------KEGYVAIWQKPFNNDCYLSREAGTKPPLCDESDDPDNVW 473
Query: 479 YVPMKTCLHTIPSSIEQHGTEWPEEWPKRLETYPDWLND---------KEKLSSDTRHWK 529
Y +K C+ IP + +G P WP RL T PD L KE +++++W
Sbjct: 474 YTNLKPCISRIPE--KGYGGNVPL-WPARLHTPPDRLQTIKFDSYIARKELFKAESKYWN 530
Query: 530 AIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKI--WVMNVVPVHAPDTLPVIY 587
I+ Y+ L K+RNV+DM++ +GGFAAAL K+ WV++VVPV P+TLPVIY
Sbjct: 531 EIIG-GYVRALKWKKMKLRNVLDMRAGFGGFAAALNDHKLDCWVLSVVPVSGPNTLPVIY 589
Query: 588 DRGLVGIYHDWCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIV 647
DRGL+G+ HDWCE F TYPR+YD LHA LFS + RC +I++EMDRILRPGG A +
Sbjct: 590 DRGLLGVMHDWCEPFDTYPRTYDFLHASGLFSIERKRCEMS-TILLEMDRILRPGGRAYI 648
Query: 648 RDKVEILDPLEGILRSLHW 666
RD ++++D ++ I +++ W
Sbjct: 649 RDSIDVMDEIQEITKAMGW 667
|
|
| TAIR|locus:2153704 AT5G06050 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
Identities = 205/506 (40%), Positives = 288/506 (56%)
Query: 186 WKLCSTRSKHNYIPCIDNESGFGKFQSY---RHTERSCPRSH--LMCLVPLPHAGYGSPV 240
+++CS + YIPC+DN + S ER+CP L C VP+P GY SP+
Sbjct: 149 FEICS-ENMTEYIPCLDNVEAIKRLNSTARGERFERNCPNDGMGLNCTVPIPQ-GYRSPI 206
Query: 241 SWPDSRLKILYKNVAHPKLAAYIKKHNWLVESGEYLTFPQNQSEFKGGVLHYLESIEEMV 300
WP SR ++ + NV H KL NW+ + + FP ++F G YL+ I +M+
Sbjct: 207 PWPRSRDEVWFNNVPHTKLVEDKGGQNWIYKENDKFKFPGGGTQFIHGADQYLDQISQMI 266
Query: 301 PDIEWGKNIRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVVSP 360
PDI +G + RVVL+IG SF A L+++ VLT+++ KD + Q ALERG PA+V+
Sbjct: 267 PDISFGNHTRVVLDIGCGVASFGAYLMSRNVLTMSIAPKDVHENQIQFALERGVPAMVAA 326
Query: 361 LGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST----KHDSIX 416
RRL +PS FD +HC C I W G LLLE+NR+LR GYF+ + KH+
Sbjct: 327 FTTRRLLYPSQAFDLVHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAAQPVYKHEKAL 386
Query: 417 XXX--XXXXXXXSICWNILAHKTDEISEMGVKIYQKPESNDIYELRRKK-NPPLCKENEN 473
+CW +L K I+ I+QKP +N Y R +PPLC ++
Sbjct: 387 EEQWEEMLNLTTRLCW-VLVKKEGYIA-----IWQKPVNNTCYLSRGAGVSPPLCNSEDD 440
Query: 474 PDAAWYVPMKTCLHTIPSSIEQHGTEWPEEWPKRLETYPDWLND---------KEKLSSD 524
PD WYV +K C+ I + +G WP RL T PD L KE ++
Sbjct: 441 PDNVWYVDLKACITRIEEN--GYGANLAP-WPARLLTPPDRLQTIQIDSYIARKELFVAE 497
Query: 525 TRHWKAIVDRSYLTGLGIDWSKI--RNVMDMKSIYGGFAAALAQQKI--WVMNVVPVHAP 580
+++WK I+ +Y+ L W +I RNV+DM++ +GGFAAALA+ K+ WV+NV+PV P
Sbjct: 498 SKYWKEIIS-NYVNAL--HWKQIGLRNVLDMRAGFGGFAAALAELKVDCWVLNVIPVSGP 554
Query: 581 DTLPVIYDRGLVGIYHDWCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILR 640
+TLPVIYDRGL+G+ HDWCE F TYPR+YDLLHA LFS + RC ++++EMDRILR
Sbjct: 555 NTLPVIYDRGLLGVMHDWCEPFDTYPRTYDLLHAAGLFSIERKRCNM-TTMMLEMDRILR 613
Query: 641 PGGWAIVRDKVEILDPLEGILRSLHW 666
PGG +RD + + L+ I ++ W
Sbjct: 614 PGGRVYIRDTINVTSELQEIGNAMRW 639
|
|
| TAIR|locus:2195955 AT1G77260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 922 (329.6 bits), Expect = 1.5e-92, P = 1.5e-92
Identities = 199/498 (39%), Positives = 288/498 (57%)
Query: 187 KLCSTRSKHNYIPCIDNESGFGKFQSY---RHTERSCPRSHLMCLVPLPHAGYGSPVSWP 243
KLC ++K +YIPC+DNE + + + ER CP+ L CL+P P GY P+ WP
Sbjct: 144 KLCD-KTKIDYIPCLDNEEEIKRLNNTDRGENYERHCPKQSLDCLIPPPD-GYKKPIQWP 201
Query: 244 DSRLKILYKNVAHPKLAAYIKKHNWLVESGEYLTFPQNQSEFKGGVLHYLESIEEMVPDI 303
SR KI + NV H +L NW+ + FP ++F G YL+ I +M+PDI
Sbjct: 202 QSRDKIWFNNVPHTRLVEDKGGQNWIRREKDKFVFPGGGTQFIHGADQYLDQISQMIPDI 261
Query: 304 EWGKNIRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGN 363
+G RV L+IG SF A L+ + TL+V KD + Q ALERG PA+V+
Sbjct: 262 TFGSRTRVALDIGCGVASFGAFLMQRNTTTLSVAPKDVHENQIQFALERGVPAMVAVFAT 321
Query: 364 RRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST----KH-DSIXXX 418
RRL +PS F+ IHC C I W G LLLE+NR+LR GYF+ + KH D++
Sbjct: 322 RRLLYPSQSFEMIHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAAQPVYKHEDNLQEQ 381
Query: 419 XXXXXXXXS-ICWNILAHKTDEISEMGVKIYQKPESNDIYELRRK-KNPPLCKENENPDA 476
+ ICW ++ E + +++KP +N Y R PPLC+ +++PD
Sbjct: 382 WKEMLDLTNRICWELIK------KEGYIAVWRKPLNNSCYVSREAGTKPPLCRPDDDPDD 435
Query: 477 AWYVPMKTCLHTIPSS-IEQHGTEWP---EEWPKRLETYP-D-WLNDKEKLSSDTRHWKA 530
WYV MK C+ +P + + + WP + P+RL++ D +++ KE + +++R W
Sbjct: 436 VWYVDMKPCITRLPDNGYGANVSTWPARLHDPPERLQSIQMDAYISRKEIMKAESRFWLE 495
Query: 531 IVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKI--WVMNVVPVHAPDTLPVIYD 588
+V+ SY+ K+RNV+DM++ +GGFAAAL + WVMN+VPV +TLPVIYD
Sbjct: 496 VVE-SYVRVFRWKEFKLRNVLDMRAGFGGFAAALNDLGLDCWVMNIVPVSGFNTLPVIYD 554
Query: 589 RGLVGIYHDWCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648
RGL G HDWCE F TYPR+YDL+HA LFS K RC +I++EMDR+LRPGG +R
Sbjct: 555 RGLQGAMHDWCEPFDTYPRTYDLIHAAFLFSVEKKRCNI-TNIMLEMDRMLRPGGHVYIR 613
Query: 649 DKVEILDPLEGILRSLHW 666
D + ++D L+ + +++ W
Sbjct: 614 DSLSLMDQLQQVAKAIGW 631
|
|
| TAIR|locus:2018329 AT1G04430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 863 (308.9 bits), Expect = 2.6e-86, P = 2.6e-86
Identities = 199/520 (38%), Positives = 282/520 (54%)
Query: 185 SWKLCSTRSKHNYIPCIDNESGFGK-----FQSYRHTERSCP--RSHLMCLVPLPHAGYG 237
S+ +C R IPC+D + H ER CP CL+P P +GY
Sbjct: 83 SFPVCDDRHSE-IIPCLDRNFIYQMRLKLDLSLMEHYERHCPPPERRFNCLIP-PPSGYK 140
Query: 238 SPVSWPDSRLKILYKNVAHPKLAAYIKKHNWLVESGEYLTFPQNQSEFKGGVLHYLESIE 297
P+ WP SR ++ N+ H LA NW+VE GE ++FP + F G Y+ SI
Sbjct: 141 VPIKWPKSRDEVWKANIPHTHLAKEKSDQNWMVEKGEKISFPGGGTHFHYGADKYIASIA 200
Query: 298 EMVP---DI--EWGKNIRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALER 352
M+ D+ + G+ +R VL++G SF A LLA +++T+++ D + Q ALER
Sbjct: 201 NMLNFSNDVLNDEGR-LRTVLDVGCGVASFGAYLLASDIMTMSLAPNDVHQNQIQFALER 259
Query: 353 GFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412
G PA + LG +RLP+PS F+ HC C I W G LLLE++R+LRP GYF S+
Sbjct: 260 GIPAYLGVLGTKRLPYPSRSFEFAHCSRCRIDWLQRDGLLLLELDRVLRPGGYFAYSSPE 319
Query: 413 ------DSIXXXXXXXXXXXSICWNILAHKTDEISEMGVKIYQKPESNDIYELRRKKN-- 464
+++ +CW I + + ++QKP SND Y L R+
Sbjct: 320 AYAQDEENLKIWKEMSALVERMCWRIAVKRNQTV------VWQKPLSNDCY-LEREPGTQ 372
Query: 465 PPLCKENENPDAAWYVPMKTCLHTIPSSIEQHGTEWP--EEWPKRLETYPDWLND----K 518
PPLC+ + +PDA V M+ C+ P S H T+ WP RL + P L D
Sbjct: 373 PPLCRSDADPDAVAGVSMEACI--TPYSKHDHKTKGSGLAPWPARLTSSPPRLADFGYST 430
Query: 519 EKLSSDTRHWKAIVDRSY--LTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVP 576
+ DT WK VD SY L + + +RN+MDMK+ G FAAAL + +WVMNVV
Sbjct: 431 DMFEKDTELWKQQVD-SYWNLMSSKVKSNTVRNIMDMKAHMGSFAAALKDKDVWVMNVVS 489
Query: 577 VHAPDTLPVIYDRGLVGIYHDWCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMD 636
P+TL +IYDRGL+G H+WCE+F TYPR+YDLLHA +FS +KS+ +++EMD
Sbjct: 490 PDGPNTLKLIYDRGLIGTNHNWCEAFSTYPRTYDLLHAWSIFSDIKSKGCSAEDLLIEMD 549
Query: 637 RILRPGGWAIVRDKVEILDPLEGILRSLHWEIRMTYAQDK 676
RILRP G+ I+RDK +++ ++ L++LHWE T A +K
Sbjct: 550 RILRPTGFVIIRDKQSVVESIKKYLQALHWE---TVASEK 586
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9LN50 | PMTS_ARATH | 2, ., 1, ., 1, ., - | 0.6657 | 0.9738 | 0.9267 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| estExt_fgenesh4_pg.C_LG_II2588 | hypothetical protein (736 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 689 | |||
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 0.0 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 3e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 6e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 5e-04 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 6e-04 | |
| pfam09507 | 427 | pfam09507, CDC27, DNA polymerase subunit Cdc27 | 7e-04 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 0.001 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.003 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 696 bits (1799), Expect = 0.0
Identities = 243/514 (47%), Positives = 316/514 (61%), Gaps = 33/514 (6%)
Query: 196 NYIPCIDNESGFGKFQS---YRHTERSCPRSH--LMCLVPLPHAGYGSPVSWPDSRLKIL 250
+YIPC+DN+ S H ER CP S L CLVP P GY +P+ WP SR K+
Sbjct: 1 DYIPCLDNDRAIKFLLSRERMEHRERHCPPSEEKLRCLVPPPD-GYKTPIPWPKSRDKVW 59
Query: 251 YKNVAHPKLAAYIKKHNWLVESGEYLTFPQNQSEFKGGVLHYLESIEEMVPDIEWGKNIR 310
Y NV H KLA NW+ G+ FP ++F G Y++ + +M+PDI WG +R
Sbjct: 60 YANVPHTKLAEEKGGQNWVKVEGDKFRFPGGGTQFPHGADAYIDFLAQMIPDIAWGGRVR 119
Query: 311 VVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPS 370
L++G SF A LL+++VLT++ KD Q ALERG PA++ LG RRLP+PS
Sbjct: 120 TALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEAQVQFALERGVPAMLGVLGTRRLPYPS 179
Query: 371 GVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILS-------TKHDSIEEEEALTT 423
FD HC C I WHA+ G LLLE++R+LRP GYF+LS + D EE +A+
Sbjct: 180 RSFDMAHCSRCLIPWHANDGILLLEVDRVLRPGGYFVLSGPPVYARDEEDLQEEWKAMEA 239
Query: 424 LTASICWNILAHKTDEISEMGVKIYQKPESNDIYELRRK-KNPPLCKENENPDAAWYVPM 482
L S+CW ++A K D + I+QKP +N Y R K PPLCK++++PDAAWYVPM
Sbjct: 240 LAKSLCWKLVAKKGD------IAIWQKPVNNSCYNKREPGKKPPLCKDSDDPDAAWYVPM 293
Query: 483 KTCLHTIPSSIEQHGTEWPEEWPKRLETYPDWLND-------KEKLSSDTRHWKAIVDRS 535
+ C+ +P + G W E+WP+RL P L E +DT WK V +
Sbjct: 294 EACITPLPEVSHEVGGGWLEKWPERLTAVPPRLASGQIGGVSAEAFKADTELWKRRVSKY 353
Query: 536 Y-LTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAPDTLPVIYDRGLVGI 594
L L ID ++RNVMDM + +GGFAAAL +WVMNVVPV +PDTLPVIYDRGL+GI
Sbjct: 354 KRLLKLLIDKGRVRNVMDMNAGFGGFAAALIDDPVWVMNVVPVDSPDTLPVIYDRGLIGI 413
Query: 595 YHDWCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVEIL 654
YHDWCE F TYPR+YDLLHADHLFS K RC I++EMDRILRPGG I+RD V++L
Sbjct: 414 YHDWCEPFSTYPRTYDLLHADHLFSLYKKRCNL-EDILLEMDRILRPGGAVIIRDDVDVL 472
Query: 655 DPLEGILRSLHWEIRMTYAQD----KEGILCAQK 684
D ++ I +++ WE+R+T +D E IL AQK
Sbjct: 473 DKVKKIAKAMRWEVRITDTEDGPHDPEKILIAQK 506
|
This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 3e-06
Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 14/101 (13%)
Query: 313 LEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALER-----GFPAVVSPLGNRRLP 367
L++G +A LA+ G VDL+ L VV LP
Sbjct: 1 LDVGCGT-GLLAEALARRGGARVTG-----VDLSPEMLALARKRAPRKFVVGDA--EDLP 52
Query: 368 FPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFIL 408
FP FD + + + L E+ R+L+P G ++
Sbjct: 53 FPDESFDVVVS-SLVLHHLPDPERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (109), Expect = 6e-05
Identities = 33/155 (21%), Positives = 73/155 (47%), Gaps = 10/155 (6%)
Query: 24 KPQYTERKRQWHEIGKEEDKKVKLESDLDKAKEKKINGSASVTVIKHESRKKNEKTVPNV 83
K E+K + E K E+ K+K E +L KA+E+K E +K E +
Sbjct: 1599 KLYEEEKKMKAEEAKKAEEAKIKAE-ELKKAEEEKKKVEQLKKKEAEEKKKAEE-----L 1652
Query: 84 KK--QKHTVKSVNEETNEENEKSESDDSLKEDEEEQEQEVVDGKEEESVRESE-VNGETE 140
KK +++ +K+ E E +K +++++ K +E+E++ KE E +++E + +
Sbjct: 1653 KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEA 1712
Query: 141 GDVDLVQQ-ENEQSVVTVEGESGRSRSTGKKRKVK 174
+ ++ + + ++ E + + K+K +
Sbjct: 1713 EEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAE 1747
|
Length = 2084 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (101), Expect = 5e-04
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 8/143 (5%)
Query: 19 KVISSKPQYTERKRQWHEIGK-EEDKKVKLESDLDKAKEKKINGSASVTVIKHESRKKNE 77
KV K + E K++ E+ K EE+ K+K + KA+E K A E KK
Sbjct: 1634 KVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDK--KKAEEAKKAEEDEKKAA 1691
Query: 78 KTVPNVKKQKHTVKSVNEETNEENEKSESDDSLKEDEEEQEQEVVDGK--EEESVRESEV 135
+ + ++ + + ++ EE +K+E LK+ EEE + + + K EE +++E
Sbjct: 1692 EALKKEAEEAKKAEELKKKEAEEKKKAE---ELKKAEEENKIKAEEAKKEAEEDKKKAEE 1748
Query: 136 NGETEGDVDLVQQENEQSVVTVE 158
+ E + + ++ E
Sbjct: 1749 AKKDEEEKKKIAHLKKEEEKKAE 1771
|
Length = 2084 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 6e-04
Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 8/104 (7%)
Query: 312 VLEIGS---ADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVVSPL---GNRR 365
VL++G A +AS V + + ++LA+ A V L
Sbjct: 2 VLDLGCGTGALALALASGPGARVTGVDIS--PVALELARKAAAALLADNVEVLKGDAEEL 59
Query: 366 LPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILS 409
P FD I D + L E R+L+P G +L+
Sbjct: 60 PPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27 | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 7e-04
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 22/139 (15%)
Query: 53 KAKEKKINGSASVTVIKHESRKKNEKT-----------------VPNVKKQKHTVKSVNE 95
K KEKK AS + +K ES +++ K + + +S +E
Sbjct: 225 KTKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSE 284
Query: 96 ETNEENEKSESDDSLKEDEEEQEQEVVDGKEEESVRESEVNGETEGDVDLVQQENEQSVV 155
E EE EK + LK+ E+++++ ES E E + E E ++E ++ V
Sbjct: 285 EETEEKEKEKRKR-LKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEE-V 342
Query: 156 TVEGESGRSRSTGKKRKVK 174
TV + GR R +R+V
Sbjct: 343 TVSPDGGRRR---GRRRVM 358
|
This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. Length = 427 |
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.001
Identities = 33/179 (18%), Positives = 60/179 (33%), Gaps = 9/179 (5%)
Query: 22 SSKPQYTERKRQWHEIGKEEDKKVKLESDLDKA---KEKKINGSASVTVIKHESRKKNEK 78
+ + E KE+ K+ K + K++K A E K+ EK
Sbjct: 93 KPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEK 152
Query: 79 TVPNVKKQKHTVKSVNEETNEENEKSESDDSLKEDEEEQEQEVVDGKEEESV----RESE 134
V + ++ K +K + +E E+E E+V E +
Sbjct: 153 KVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPD 212
Query: 135 VNGETEGDVDLVQQENEQSVVTVEGESGRSRSTGKKRKVKGPVFDPKAHYSWKLCSTRS 193
VN E E + D ++ ++ + E +S+ R+ + P S TR
Sbjct: 213 VNEEREKEED--DGKDRETTTSPMEEDESRQSSEISRRSSSSLKKPDPSPSMASPETRE 269
|
This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (95), Expect = 0.003
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 8/137 (5%)
Query: 11 AEPVSADTKVISSKPQYTERKRQWHEIGKEEDKKVKLESDLDKAKEKK----INGSASVT 66
AE A+ + + + + E K + E KEE KK K ++ KA+EKK A
Sbjct: 1345 AEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK-KADAAKKKAEEKKKADEAKKKAEED 1403
Query: 67 VIKHESRKKNE---KTVPNVKKQKHTVKSVNEETNEENEKSESDDSLKEDEEEQEQEVVD 123
K + KK K KK+ K +E + E ++D++ K+ EE ++ E
Sbjct: 1404 KKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAK 1463
Query: 124 GKEEESVRESEVNGETE 140
K EE+ + E + E
Sbjct: 1464 KKAEEAKKADEAKKKAE 1480
|
Length = 2084 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 689 | |||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 99.9 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.71 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.65 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.62 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.61 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.6 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.47 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.46 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.46 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.42 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.42 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.41 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.4 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.38 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.36 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.36 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.33 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.31 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.31 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.31 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.29 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.27 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.27 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.24 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.24 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.24 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.23 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.23 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.23 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.22 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.19 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.18 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.18 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.17 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.15 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.15 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.15 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.13 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.13 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.13 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.13 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.12 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.1 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.1 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.09 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.08 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.08 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.08 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.06 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.02 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.02 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.02 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.01 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.0 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.0 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.99 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.99 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.99 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.99 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.99 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.97 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.97 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 98.97 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.93 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.92 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.91 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.9 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.9 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 98.89 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.89 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.88 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.87 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.86 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.85 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.85 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.85 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 98.85 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.84 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.84 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 98.83 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.83 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.82 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.82 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.8 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.76 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.76 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.75 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.74 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.73 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.7 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.7 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.68 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.66 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.66 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.65 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.65 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.63 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 98.63 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.59 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.55 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.53 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.5 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.49 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.46 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.45 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.45 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.41 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.41 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.41 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.36 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.35 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.34 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.34 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.33 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.33 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.31 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.29 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.28 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.26 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.26 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.24 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.24 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.23 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.22 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.22 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.21 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.21 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.21 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.18 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.16 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.15 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.13 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.13 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.09 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.07 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.07 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.07 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.06 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.03 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 97.98 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 97.97 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.92 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.91 | |
| PLN02366 | 308 | spermidine synthase | 97.91 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 97.89 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 97.88 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 97.87 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.86 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 97.85 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 97.84 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 97.84 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 97.79 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.78 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 97.77 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 97.77 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.76 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 97.69 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 97.69 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.68 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.65 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.62 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 97.6 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.59 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.57 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 97.53 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.5 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.48 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.46 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.42 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.41 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 97.41 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.4 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.39 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.32 | |
| PLN02476 | 278 | O-methyltransferase | 97.32 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.26 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.22 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 97.19 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.16 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.16 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.14 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.14 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.11 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.09 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.09 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.04 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.01 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 97.01 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 96.94 | |
| PLN02823 | 336 | spermine synthase | 96.92 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 96.84 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 96.82 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 96.76 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 96.69 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 96.67 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 96.67 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 96.67 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 96.54 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 96.52 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 96.5 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 96.37 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 96.34 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 96.3 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 96.29 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 96.23 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 96.2 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 96.11 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 96.07 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 96.06 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.05 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 96.04 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.03 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 95.93 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 95.9 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 95.9 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 95.87 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 95.85 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 95.83 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 95.81 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 95.79 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 95.77 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 95.73 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 95.73 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 95.68 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 95.66 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 95.5 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 95.49 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 95.49 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 95.48 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 95.37 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 95.23 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 95.21 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 95.14 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 95.14 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 95.08 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 95.05 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 95.04 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 95.04 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 95.03 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 95.0 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 95.0 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 94.98 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.97 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 94.9 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 94.87 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 94.82 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 94.74 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 94.67 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 94.67 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 94.54 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 94.51 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 94.51 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 94.47 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 94.4 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 94.27 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 94.2 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 94.11 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 94.09 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 94.04 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 94.02 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 93.92 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 93.9 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 93.81 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 93.79 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 93.79 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 93.75 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 93.74 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 93.73 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 93.72 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 93.72 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 93.67 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 93.63 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 93.57 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 93.41 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 93.31 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 93.31 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 93.18 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 93.1 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 93.04 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 92.85 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 92.78 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 92.78 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 92.73 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 92.61 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 92.58 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 92.51 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 92.45 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 92.44 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 92.31 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 92.29 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 92.2 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 92.1 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 92.06 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 92.0 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 91.7 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 91.57 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 91.37 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 91.33 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 91.27 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 91.26 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 91.09 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 91.03 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 90.94 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 90.89 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 90.84 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 90.74 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 90.66 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 90.63 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 90.56 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 90.51 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 90.41 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 89.95 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 89.81 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 89.78 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 89.66 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 88.93 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 88.51 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 88.44 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 88.21 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 87.9 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 87.76 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 87.37 | |
| PRK04266 | 226 | fibrillarin; Provisional | 87.32 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 87.05 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 86.35 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 85.96 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 85.56 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 85.52 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 85.5 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 85.26 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 85.2 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 85.14 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 84.2 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 83.7 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 83.19 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 83.1 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 82.89 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 82.56 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 81.94 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 81.77 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 81.21 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 80.29 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 80.18 |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-165 Score=1337.00 Aligned_cols=481 Identities=49% Similarity=0.964 Sum_probs=458.7
Q ss_pred CcccCCCchhhccC---CccccccccCCCC--CCCCccccCCCCCCCCCCCCChhhhhhccccCCChhhhhhhcccccee
Q 044932 196 NYIPCIDNESGFGK---FQSYRHTERSCPR--SHLMCLVPLPHAGYGSPVSWPDSRLKILYKNVAHPKLAAYIKKHNWLV 270 (689)
Q Consensus 196 ~y~PC~D~~~~~~~---~~~~~~~ER~Cp~--~~~~Clvp~P~~~y~~P~pWP~srd~~W~~Nvp~~~L~~~k~~q~W~~ 270 (689)
|||||+|+.+++++ +.+++|||||||+ ++++||||+|+ +|+.|++||+|||++||+|+||++|+++|++|||++
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~-gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~ 79 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPK-GYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVR 79 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCc-cCCCCCCCCcccceeeecccCchHHhhhccccccee
Confidence 79999999999976 4667899999999 68999999999 999999999999999999999999999999999999
Q ss_pred ccCceeecCCCCcccchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcCCeEEEEcCCcccHHHHHHHHH
Q 044932 271 ESGEYLTFPQNQSEFKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVAL 350 (689)
Q Consensus 271 ~~g~~~~Fpgggt~F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~~V~gmDIsp~D~seamlq~A~ 350 (689)
++|++|.|||||++|++||++|+++|.+++|.+.+++.+|++||+|||+|+||++|++++|++|+++|.|.+++++|+|+
T Consensus 80 ~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfal 159 (506)
T PF03141_consen 80 VEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFAL 159 (506)
T ss_pred ecCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhh
Confidence 99999999999999999999999999999996567778999999999999999999999999999999999999999999
Q ss_pred HcCCCcEEecCCCCCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCc-------hhHHHHHHH
Q 044932 351 ERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDS-------IEEEEALTT 423 (689)
Q Consensus 351 eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~-------le~~~~ie~ 423 (689)
+||++++++++++++||||+++||+|||++|+++|+.+.+.+|.|++|||||||||+++.|+.+ ...|..|+.
T Consensus 160 eRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~ 239 (506)
T PF03141_consen 160 ERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMED 239 (506)
T ss_pred hcCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999866 246789999
Q ss_pred HHHhcceeEEEeeccccCceeEEEEEeCCCchhHhhhhC-CCCCCCCCCCCCCCccccccccccccCCccccccCCCCCC
Q 044932 424 LTASICWNILAHKTDEISEMGVKIYQKPESNDIYELRRK-KNPPLCKENENPDAAWYVPMKTCLHTIPSSIEQHGTEWPE 502 (689)
Q Consensus 424 La~~l~W~~v~~~~~~~g~~~i~IwqKp~~~~cy~~r~~-~~p~~C~~~~d~d~~Wy~~l~~Ci~~~p~~~~~~~~~~~~ 502 (689)
++++|||++++++.+ ++|||||.+++||.+|+. +.||+|+.++|||++||++|++||||+|+..+..+++|++
T Consensus 240 l~~~lCW~~va~~~~------~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~ 313 (506)
T PF03141_consen 240 LAKSLCWKKVAEKGD------TAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLP 313 (506)
T ss_pred HHHHHHHHHheeeCC------EEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCC
Confidence 999999999998877 899999999999999986 8999999899999999999999999999987777888999
Q ss_pred CCccccccCCCccCc-------hhhhhhhhHHHHHHHHHhh-hcccCCCCCCeeEEeecCCcchhHHHHhccCCceEEEe
Q 044932 503 EWPKRLETYPDWLND-------KEKLSSDTRHWKAIVDRSY-LTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNV 574 (689)
Q Consensus 503 ~wP~Rl~~~p~rl~~-------~e~f~~D~~~W~~~v~~~y-~~~l~~~~~~iRNvmDMna~~GgFAAal~~~~vWVMNv 574 (689)
+||+||+++|+||.+ .+.|.+||++|+++|++|| +..+.+++++||||||||||||||||||+++|||||||
T Consensus 314 ~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNV 393 (506)
T PF03141_consen 314 KWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNV 393 (506)
T ss_pred CChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEEEe
Confidence 999999999999985 7999999999999999755 33456999999999999999999999999999999999
Q ss_pred ccCCCCCchhhhhccccchhhccccCCCCCCCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeCchhhH
Q 044932 575 VPVHAPDTLPVIYDRGLVGIYHDWCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVEIL 654 (689)
Q Consensus 575 vp~~~~~tL~vI~~RGLig~yhdwce~f~typrTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~~~l 654 (689)
||+.++|||+|||||||||+||||||+|||||||||||||+||||.|++||+| +||||||||||||||++||||++++|
T Consensus 394 VP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~-~~illEmDRILRP~G~~iiRD~~~vl 472 (506)
T PF03141_consen 394 VPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEM-EDILLEMDRILRPGGWVIIRDTVDVL 472 (506)
T ss_pred cccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccH-HHHHHHhHhhcCCCceEEEeccHHHH
Confidence 99999999999999999999999999999999999999999999999999995 99999999999999999999999999
Q ss_pred HHHHHHHhhcceeEEEeecCC----CceEEEEEe
Q 044932 655 DPLEGILRSLHWEIRMTYAQD----KEGILCAQK 684 (689)
Q Consensus 655 ~~v~~i~~~lrW~~~~~~~~~----~E~iL~~~K 684 (689)
++|++|+++|||+++++++++ +||||||+|
T Consensus 473 ~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 473 EKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred HHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 999999999999999998876 799999998
|
; GO: 0008168 methyltransferase activity |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.8e-24 Score=233.74 Aligned_cols=205 Identities=26% Similarity=0.451 Sum_probs=165.5
Q ss_pred CCccccCCCC----CCCCCCCCChhhhhhccccCCChhhhhhhccccceeccCceeecCCCCcccchhHHHHHHHHHhhc
Q 044932 225 LMCLVPLPHA----GYGSPVSWPDSRLKILYKNVAHPKLAAYIKKHNWLVESGEYLTFPQNQSEFKGGVLHYLESIEEMV 300 (689)
Q Consensus 225 ~~Clvp~P~~----~y~~P~pWP~srd~~W~~Nvp~~~L~~~k~~q~W~~~~g~~~~Fpgggt~F~~ga~~Yid~L~~~L 300 (689)
..||+++|.. +...+.+||+|+ ++++++|...... .-....|..+...|+..+.+|...+.-
T Consensus 294 ~~Cit~~p~~~~~~~~~~~~~WP~RL------~~~P~rl~~~~~~------g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~-- 359 (506)
T PF03141_consen 294 EACITPLPEVSSEIAGGWLPKWPERL------NAVPPRLSSGSIP------GISPEEFKEDTKHWKKRVSHYKKLLGL-- 359 (506)
T ss_pred hhhcCcCCcccccccccCCCCChhhh------ccCchhhhcCCcC------CCCHHHHHHHHHHHHHHHHHHHHhhcc--
Confidence 7899999984 467899999999 7788888752211 112457888999999999999876652
Q ss_pred ccccCCCCCCeEEEECCccchhHHHhhcCCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecc
Q 044932 301 PDIEWGKNIRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDG 380 (689)
Q Consensus 301 p~l~~G~~~R~VLDVGCGtGsfaa~La~~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~ 380 (689)
.+.++ .+|+||||++|+|+|||+|.+..|++|++.|.. ..+.+.++++||+.++++... +.+++-+++||+||+..
T Consensus 360 -~i~~~-~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~-~~ntL~vIydRGLIG~yhDWC-E~fsTYPRTYDLlHA~~ 435 (506)
T PF03141_consen 360 -AIKWG-RIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVS-GPNTLPVIYDRGLIGVYHDWC-EAFSTYPRTYDLLHADG 435 (506)
T ss_pred -ccccc-ceeeeeeecccccHHHHHhccCCceEEEecccC-CCCcchhhhhcccchhccchh-hccCCCCcchhheehhh
Confidence 24565 799999999999999999999999999999984 468999999999999998652 45654349999999875
Q ss_pred ccccccc--cHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccc--cCceeEEEEEe
Q 044932 381 CSITWHA--HGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDE--ISEMGVKIYQK 450 (689)
Q Consensus 381 cli~W~~--d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~--~g~~~i~IwqK 450 (689)
.+..|.. +...+|.||+|||||||+++|++...++.. ++.++++|+|+....+.+. .+.+.|+++||
T Consensus 436 lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~---v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 436 LFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVDVLEK---VKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred hhhhhcccccHHHHHHHhHhhcCCCceEEEeccHHHHHH---HHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 4333321 346899999999999999999999887765 8899999999998777765 34688999997
|
; GO: 0008168 methyltransferase activity |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.4e-17 Score=165.81 Aligned_cols=138 Identities=21% Similarity=0.236 Sum_probs=107.7
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCC-----cEEecCCCCCCCCCCCCcceEEe
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFP-----AVVSPLGNRRLPFPSGVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~-----~i~~~~dt~~LPFpD~SFDlVhc 378 (689)
++.+|||||||||.++..++.. .|+++|+++ .|+..|++|-.. ..+..++++.|||+|+|||+|+|
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~-----~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~ 125 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISE-----SMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTI 125 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCH-----HHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEe
Confidence 4679999999999999888753 489999875 688888887332 33456788999999999999999
Q ss_pred ccccccccccHHHHHHHHHhccCCCcEEEEEcCC--C--------------------------------ch-------hH
Q 044932 379 DGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH--D--------------------------------SI-------EE 417 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~--~--------------------------------~l-------e~ 417 (689)
++.+ ++..|...+|+||+|||||||.+++.+.. . ++ ..
T Consensus 126 ~fgl-rnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~ 204 (238)
T COG2226 126 SFGL-RNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPD 204 (238)
T ss_pred eehh-hcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCC
Confidence 8654 45779999999999999999999987521 0 00 01
Q ss_pred HHHHHHHHHhcceeEEEeeccccCceeEEEEEeC
Q 044932 418 EEALTTLTASICWNILAHKTDEISEMGVKIYQKP 451 (689)
Q Consensus 418 ~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqKp 451 (689)
++.+.......+|..+.....++|.+++.+.+|+
T Consensus 205 ~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~K~ 238 (238)
T COG2226 205 QEELKQMIEKAGFEEVRYENLTFGIVALHRGYKP 238 (238)
T ss_pred HHHHHHHHHhcCceEEeeEeeeeeeEEEEEEecC
Confidence 3467778888999988766666777778877774
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-16 Score=173.06 Aligned_cols=300 Identities=16% Similarity=0.156 Sum_probs=157.4
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc-C-CC-cEEecCCC--CCCCCCCCCcceEEeccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER-G-FP-AVVSPLGN--RRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR-G-L~-~i~~~~dt--~~LPFpD~SFDlVhcs~c 381 (689)
..+|||+|||+|.++..|+.. .|+++|+++ .|++.+..+ + .+ ..+...+. ..+||++++||+|+|..+
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~-----~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~ 112 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKAGQVIALDFIE-----SVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWL 112 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCH-----HHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhh
Confidence 468999999999999888864 589999876 455555432 1 11 22333343 357899999999999865
Q ss_pred ccccccc--HHHHHHHHHhccCCCcEEEEEcCC--------------CchhHHHHHHHHHHhcceeEEEeeccccCceeE
Q 044932 382 SITWHAH--GGKLLLEMNRILRPSGYFILSTKH--------------DSIEEEEALTTLTASICWNILAHKTDEISEMGV 445 (689)
Q Consensus 382 li~W~~d--~~~aL~EI~RVLRPGG~fVIsdp~--------------~~le~~~~ie~La~~l~W~~v~~~~~~~g~~~i 445 (689)
+.+ ..+ ...+|.++.|+|||||++++.+.. .++. ...+..+....++......... ..
T Consensus 113 l~~-l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~----~~ 186 (475)
T PLN02336 113 LMY-LSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYRE-PRFYTKVFKECHTRDEDGNSFE----LS 186 (475)
T ss_pred HHh-CCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecC-hHHHHHHHHHheeccCCCCEEE----EE
Confidence 544 333 468999999999999999997522 1111 2345566666666543221110 11
Q ss_pred EEEEeCCCchhHhhhhCCCCCCCCCCCCCCCccccccccccccCCccccccCCCCCCCCccccccCCCccCchhhhhhhh
Q 044932 446 KIYQKPESNDIYELRRKKNPPLCKENENPDAAWYVPMKTCLHTIPSSIEQHGTEWPEEWPKRLETYPDWLNDKEKLSSDT 525 (689)
Q Consensus 446 ~IwqKp~~~~cy~~r~~~~p~~C~~~~d~d~~Wy~~l~~Ci~~~p~~~~~~~~~~~~~wP~Rl~~~p~rl~~~e~f~~D~ 525 (689)
...-++.+ -|.+.+.+..-+|.....-+..=...+..++.. +.-.++.|...+.|....
T Consensus 187 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~y~~~~i~~~~~f~g~~ 245 (475)
T PLN02336 187 LVGCKCIG--AYVKNKKNQNQICWLWQKVSSTNDKGFQRFLDN-------------------VQYKSSGILRYERVFGEG 245 (475)
T ss_pred EEEeechh--hhhhccCCcceEEEEEEeecCCcchhHHHHhhh-------------------hccccccHHHHHHHhCCC
Confidence 22222221 233322222222321111010000222233321 111111121111111000
Q ss_pred HHHHHHHH--HhhhcccCCCCCCeeEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhcc--cc---chh-hc
Q 044932 526 RHWKAIVD--RSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDR--GL---VGI-YH 596 (689)
Q Consensus 526 ~~W~~~v~--~~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~R--GL---ig~-yh 596 (689)
-.+...|. ..++..+.++ .-..|+|+++|.|+++..|....-+ +|+=++-. .-|.+.-.+ |+ |-+ ..
T Consensus 246 ~~v~~~v~~te~l~~~~~~~--~~~~vLDiGcG~G~~~~~la~~~~~--~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~ 321 (475)
T PLN02336 246 FVSTGGLETTKEFVDKLDLK--PGQKVLDVGCGIGGGDFYMAENFDV--HVVGIDLSVNMISFALERAIGRKCSVEFEVA 321 (475)
T ss_pred CCCCchHHHHHHHHHhcCCC--CCCEEEEEeccCCHHHHHHHHhcCC--EEEEEECCHHHHHHHHHHhhcCCCceEEEEc
Confidence 00000000 1122222333 2357999999999998888764211 23333322 222221111 11 111 23
Q ss_pred cccCCCCCCCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 597 DWCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 597 dwce~f~typrTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
|+.+ .+..+.+||+|.+.++|-...+. ..+|-||-|+|+|||.++|.|
T Consensus 322 d~~~-~~~~~~~fD~I~s~~~l~h~~d~----~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 322 DCTK-KTYPDNSFDVIYSRDTILHIQDK----PALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred Cccc-CCCCCCCEEEEEECCcccccCCH----HHHHHHHHHHcCCCeEEEEEE
Confidence 4333 23234689999999888776543 457899999999999999875
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.1e-16 Score=158.23 Aligned_cols=97 Identities=23% Similarity=0.384 Sum_probs=69.9
Q ss_pred CCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHc----CC-CcEEecCCCCCCCCCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALER----GF-PAVVSPLGNRRLPFPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eR----GL-~~i~~~~dt~~LPFpD~SFDlVh 377 (689)
.+.+|||+|||||.++..|+.. .|+++|+++ .|++.|.++ +. ...+...+++.|||+|++||+|+
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~-----~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~ 121 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISP-----GMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVT 121 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-H-----HHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEE
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCH-----HHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEE
Confidence 3569999999999998887653 488999875 678877765 33 33455678899999999999999
Q ss_pred eccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
|++.+.+ ..|...+|.|++|||||||+|+|.+
T Consensus 122 ~~fglrn-~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 122 CSFGLRN-FPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp EES-GGG--SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHhhHHh-hCCHHHHHHHHHHHcCCCeEEEEee
Confidence 9876543 5688999999999999999999875
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-15 Score=128.87 Aligned_cols=90 Identities=23% Similarity=0.396 Sum_probs=70.5
Q ss_pred EEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCCCc--EEecCCCCCCCCCCCCcceEEeccccccccc
Q 044932 313 LEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGFPA--VVSPLGNRRLPFPSGVFDAIHCDGCSITWHA 387 (689)
Q Consensus 313 LDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL~~--i~~~~dt~~LPFpD~SFDlVhcs~cli~W~~ 387 (689)
||+|||+|.++..|+++ .|+++|+++ .+++.++++.... .+...+...+||++++||+|+|..++ +|..
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~-----~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~-~~~~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISE-----EMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVL-HHLE 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-H-----HHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHG-GGSS
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCH-----HHHHHHHhcccccCchheeehHHhCccccccccccccccce-eecc
Confidence 89999999999988876 388888764 6788888764332 25566788999999999999987655 4458
Q ss_pred cHHHHHHHHHhccCCCcEEEE
Q 044932 388 HGGKLLLEMNRILRPSGYFIL 408 (689)
Q Consensus 388 d~~~aL~EI~RVLRPGG~fVI 408 (689)
+...+|.|+.|+|||||+++|
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 899999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.8e-15 Score=150.73 Aligned_cols=136 Identities=21% Similarity=0.141 Sum_probs=99.8
Q ss_pred CCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHcC-------C-CcEEecCCCCCCCCCCCCcc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALERG-------F-PAVVSPLGNRRLPFPSGVFD 374 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eRG-------L-~~i~~~~dt~~LPFpD~SFD 374 (689)
...+|||+|||+|.++..|+.. .|+|+|+++ .|++.|.++. . ...+...+...+||++++||
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~-----~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD 147 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSS-----EQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFD 147 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCH-----HHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEe
Confidence 3568999999999988777642 589999876 5777776542 1 23355667789999999999
Q ss_pred eEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCC--------c-------------------------------h
Q 044932 375 AIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHD--------S-------------------------------I 415 (689)
Q Consensus 375 lVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~--------~-------------------------------l 415 (689)
+|+|+.++ ++..++..+|.|+.|+|||||+|++.+... . +
T Consensus 148 ~V~~~~~l-~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f 226 (261)
T PLN02233 148 AITMGYGL-RNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEY 226 (261)
T ss_pred EEEEeccc-ccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhc
Confidence 99987654 456789999999999999999999985220 0 0
Q ss_pred hHHHHHHHHHHhcceeEEEeeccccCceeEEEEE
Q 044932 416 EEEEALTTLTASICWNILAHKTDEISEMGVKIYQ 449 (689)
Q Consensus 416 e~~~~ie~La~~l~W~~v~~~~~~~g~~~i~Iwq 449 (689)
...+++..+++..+|+.+......++...+.+.+
T Consensus 227 ~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 260 (261)
T PLN02233 227 LTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT 260 (261)
T ss_pred CCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence 0224677889999998877665555555555543
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=130.22 Aligned_cols=136 Identities=15% Similarity=0.175 Sum_probs=99.8
Q ss_pred CCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHc----CCC-cEEecCCCCCCCCCCCCcceEEe
Q 044932 309 IRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALER----GFP-AVVSPLGNRRLPFPSGVFDAIHC 378 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eR----GL~-~i~~~~dt~~LPFpD~SFDlVhc 378 (689)
..+|||+|||+|.++..|+.. .|+++|+++. |++.|.++ ++. ..+...+...+||++++||+|++
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~-----~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~ 120 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSEN-----MLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTI 120 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHH-----HHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEE
Confidence 468999999999998877642 5899998863 45444432 333 23344566778899999999998
Q ss_pred ccccccccccHHHHHHHHHhccCCCcEEEEEcCCC--ch--------------------------h------------HH
Q 044932 379 DGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHD--SI--------------------------E------------EE 418 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~--~l--------------------------e------------~~ 418 (689)
... ++|..+...+|.++.|+|+|||++++.++.. .. . ..
T Consensus 121 ~~~-l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (231)
T TIGR02752 121 GFG-LRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGM 199 (231)
T ss_pred ecc-cccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCH
Confidence 654 4667788899999999999999999876421 00 0 01
Q ss_pred HHHHHHHHhcceeEEEeeccccCceeEEEEEe
Q 044932 419 EALTTLTASICWNILAHKTDEISEMGVKIYQK 450 (689)
Q Consensus 419 ~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqK 450 (689)
.++..+++..+|..+......++..++.+.+|
T Consensus 200 ~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 200 DELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 45788899999998776666667777887776
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-13 Score=137.74 Aligned_cols=99 Identities=18% Similarity=0.257 Sum_probs=81.3
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITW 385 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W 385 (689)
...+|||+|||+|.++..|... .|+++|+++ .|++.|.++.....+...+...+||++++||+|+++. .++|
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~-----~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~-~l~~ 115 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSP-----PMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNL-AVQW 115 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCH-----HHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECc-hhhh
Confidence 3568999999999998888754 589999875 6788887775433345567788999999999999875 4578
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 386 HAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 386 ~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
..++..+|.++.|+|||||+|+++...
T Consensus 116 ~~d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 116 CGNLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred cCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 889999999999999999999999754
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.1e-13 Score=134.15 Aligned_cols=133 Identities=12% Similarity=0.112 Sum_probs=94.7
Q ss_pred CCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITW 385 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W 385 (689)
..+|||+|||||.++..|+.. .|+|+|+++ .|++.|.++. . ....+.+.+||++++||+|+|+..+ +|
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~-----~Ml~~a~~~~-~--~~~~d~~~lp~~d~sfD~v~~~~~l-~~ 122 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAE-----NMLKMNLVAD-D--KVVGSFEALPFRDKSFDVVMSSFAL-HA 122 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCH-----HHHHHHHhcc-c--eEEechhhCCCCCCCEEEEEecChh-hc
Confidence 468999999999998888764 588998875 6888887763 2 2345668899999999999998754 66
Q ss_pred cccHHHHHHHHHhccCCCc-EEEEEcCCC------------------------------chh-------HHHHHHHHHHh
Q 044932 386 HAHGGKLLLEMNRILRPSG-YFILSTKHD------------------------------SIE-------EEEALTTLTAS 427 (689)
Q Consensus 386 ~~d~~~aL~EI~RVLRPGG-~fVIsdp~~------------------------------~le-------~~~~ie~La~~ 427 (689)
..++..+|+|++|||||.+ .+.++.|.. ++. ..+++.++++.
T Consensus 123 ~~d~~~~l~e~~RvLkp~~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~ 202 (226)
T PRK05785 123 SDNIEKVIAEFTRVSRKQVGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEK 202 (226)
T ss_pred cCCHHHHHHHHHHHhcCceEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7899999999999999954 333333220 000 12456666666
Q ss_pred cceeEEEeeccccCceeEEEEEeC
Q 044932 428 ICWNILAHKTDEISEMGVKIYQKP 451 (689)
Q Consensus 428 l~W~~v~~~~~~~g~~~i~IwqKp 451 (689)
.+ ..+..+..++|.+++.+.+|.
T Consensus 203 ~~-~~~~~~~~~~G~~~~~~~~k~ 225 (226)
T PRK05785 203 YA-DIKVYEERGLGLVYFVVGSSR 225 (226)
T ss_pred Hh-CceEEEEccccEEEEEEEeeC
Confidence 42 445555667788888888774
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.9e-13 Score=135.60 Aligned_cols=96 Identities=19% Similarity=0.290 Sum_probs=77.3
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
...+|||||||+|.++..|+.. .|+|+|+++ .|++.|.++++.... .+...++ ++++||+|+|..+ +
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~-----~~~~~a~~~~~~~~~--~d~~~~~-~~~~fD~v~~~~~-l 99 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSP-----EMVAAARERGVDART--GDVRDWK-PKPDTDVVVSNAA-L 99 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCH-----HHHHHHHhcCCcEEE--cChhhCC-CCCCceEEEEehh-h
Confidence 3578999999999998888753 589999875 688888887765443 4555664 5689999999754 5
Q ss_pred cccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 384 TWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 384 ~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
||..++..+|.++.|+|||||+|++..+.
T Consensus 100 ~~~~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 100 QWVPEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred hhCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 77889999999999999999999998654
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-12 Score=139.68 Aligned_cols=102 Identities=18% Similarity=0.237 Sum_probs=77.6
Q ss_pred CCCeEEEECCccchhHHHhhc---CCeEEEEcCCcccHHHHHHHHHHcCCC--cEEecCCCCCCCCCCCCcceEEecccc
Q 044932 308 NIRVVLEIGSADLSFVASLLA---KEVLTLTVGLKDDLVDLAQVALERGFP--AVVSPLGNRRLPFPSGVFDAIHCDGCS 382 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~---~~V~gmDIsp~D~seamlq~A~eRGL~--~i~~~~dt~~LPFpD~SFDlVhcs~cl 382 (689)
...+|||||||+|.++..|+. ..|+|+|+++.+.. ...+.+.+.++. ..+...|...+||++++||+|+|..++
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~-~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAA-RANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHH-HHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 457899999999999888875 36999999874221 112223334553 345667778899999999999997665
Q ss_pred ccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 383 ITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 383 i~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
.| ..+...+|.|+.|+|||||+|+|.+.
T Consensus 197 ~h-~~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 197 EH-MPDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred hc-cCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 44 56888999999999999999999764
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-12 Score=134.22 Aligned_cols=99 Identities=19% Similarity=0.217 Sum_probs=77.2
Q ss_pred CCCeEEEECCccchhHHHhhc---CCeEEEEcCCcccHHHHHHHHHHcCC---CcEEecCCCCCCCCCCCCcceEEeccc
Q 044932 308 NIRVVLEIGSADLSFVASLLA---KEVLTLTVGLKDDLVDLAQVALERGF---PAVVSPLGNRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~---~~V~gmDIsp~D~seamlq~A~eRGL---~~i~~~~dt~~LPFpD~SFDlVhcs~c 381 (689)
+..+|||||||+|.++..|+. ..|+++|+++ .|++.|.++.. ...+...+...+||++++||+|++..+
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~-----~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~ 126 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICE-----KMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDA 126 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCH-----HHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhh
Confidence 356899999999998887764 3589999875 57777776522 233445666778999999999998766
Q ss_pred ccccc-ccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 382 SITWH-AHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 382 li~W~-~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
++|+. .+...+|.++.|+|||||+|++.+.
T Consensus 127 l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 127 ILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred HHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 65644 3778999999999999999999875
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.1e-13 Score=122.99 Aligned_cols=129 Identities=26% Similarity=0.523 Sum_probs=89.5
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCC
Q 044932 292 YLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFP 369 (689)
Q Consensus 292 Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFp 369 (689)
+.+.+..+++.+ ....+|||+|||+|.++..|... .|+++|+++. ++.. +.. .....+....+++
T Consensus 9 ~~~~~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~-----~~~~---~~~--~~~~~~~~~~~~~ 75 (161)
T PF13489_consen 9 YADLLERLLPRL---KPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQ-----MIEK---RNV--VFDNFDAQDPPFP 75 (161)
T ss_dssp HHHHHHHHHTCT---TTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHH-----HHHH---TTS--EEEEEECHTHHCH
T ss_pred HHHHHHHHhccc---CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHH-----HHhh---hhh--hhhhhhhhhhhcc
Confidence 344454444322 14579999999999999888766 5889998763 3333 222 2222222345578
Q ss_pred CCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCch---------------------hHHHHHHHHHHhc
Q 044932 370 SGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSI---------------------EEEEALTTLTASI 428 (689)
Q Consensus 370 D~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~l---------------------e~~~~ie~La~~l 428 (689)
+++||+|+|..+ ++|..++..+|.++.|+|||||+++++++.... ...+.+..+++..
T Consensus 76 ~~~fD~i~~~~~-l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 154 (161)
T PF13489_consen 76 DGSFDLIICNDV-LEHLPDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQA 154 (161)
T ss_dssp SSSEEEEEEESS-GGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHT
T ss_pred ccchhhHhhHHH-HhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHC
Confidence 899999999854 566889999999999999999999999874210 0124677778887
Q ss_pred ceeEEE
Q 044932 429 CWNILA 434 (689)
Q Consensus 429 ~W~~v~ 434 (689)
+|+.+.
T Consensus 155 G~~iv~ 160 (161)
T PF13489_consen 155 GFEIVE 160 (161)
T ss_dssp TEEEEE
T ss_pred CCEEEE
Confidence 777653
|
... |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.7e-12 Score=132.52 Aligned_cols=97 Identities=24% Similarity=0.244 Sum_probs=76.1
Q ss_pred CCCeEEEECCccchhHHHhhc----------CCeEEEEcCCcccHHHHHHHHHHc----CCCc----EEecCCCCCCCCC
Q 044932 308 NIRVVLEIGSADLSFVASLLA----------KEVLTLTVGLKDDLVDLAQVALER----GFPA----VVSPLGNRRLPFP 369 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~----------~~V~gmDIsp~D~seamlq~A~eR----GL~~----i~~~~dt~~LPFp 369 (689)
...++|||+||||..|..+++ ..|+++||+|. |+..+.+| ++.. .+...|++.|||+
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~-----mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFd 174 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPH-----MLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFD 174 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHH-----HHHHHHHHHhhcCCCcCCceEEEeCCcccCCCC
Confidence 458999999999998877763 24899999874 55555444 4433 2445689999999
Q ss_pred CCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 370 SGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 370 D~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
|++||+.+.++..-. ..++.++|+|++|||||||+|.+.+
T Consensus 175 d~s~D~yTiafGIRN-~th~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 175 DDSFDAYTIAFGIRN-VTHIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred CCcceeEEEecceec-CCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 999999998765444 4478899999999999999999875
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.7e-12 Score=132.48 Aligned_cols=92 Identities=22% Similarity=0.273 Sum_probs=72.8
Q ss_pred CCeEEEECCccchhHHHhhcC-------CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK-------EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~-------~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~c 381 (689)
..+|||+|||+|.++..|+.. .|+|+|+++ .|++.|.++.....+.+.+...+||++++||+|++...
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~-----~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~ 160 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISK-----VAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA 160 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCH-----HHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC
Confidence 467999999999998877642 378888875 68888877754455566677889999999999997542
Q ss_pred cccccccHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 382 SITWHAHGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 382 li~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
+ ..+.|+.|+|||||+|++..+..
T Consensus 161 --~------~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 161 --P------CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred --C------CCHHHHHhhccCCCEEEEEeCCC
Confidence 2 35789999999999999988764
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.8e-12 Score=136.86 Aligned_cols=98 Identities=15% Similarity=0.067 Sum_probs=77.0
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc----CC--CcEEecCCCCCCCCCCCCcceEEecc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER----GF--PAVVSPLGNRRLPFPSGVFDAIHCDG 380 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR----GL--~~i~~~~dt~~LPFpD~SFDlVhcs~ 380 (689)
..+|||||||+|.++..|+.. .|+|+|+++ .|++.|+++ ++ ...+...+.+.+|+++++||+|+|..
T Consensus 132 g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~-----~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~ 206 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARMGATVTGVDAVD-----KNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLE 206 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCH-----HHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhh
Confidence 468999999999999888764 589999876 466666543 21 23344556678898889999999976
Q ss_pred ccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 381 CSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 381 cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
++ ++..++..+|.++.|+|||||.|+|++..
T Consensus 207 vL-eHv~d~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 207 VI-EHVANPAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred HH-HhcCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 54 55778999999999999999999998643
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.5e-12 Score=126.98 Aligned_cols=97 Identities=19% Similarity=0.235 Sum_probs=73.4
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc----CCC--cEEecCCCCCC-CCCCCCcceEEe
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER----GFP--AVVSPLGNRRL-PFPSGVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR----GL~--~i~~~~dt~~L-PFpD~SFDlVhc 378 (689)
...+|||+|||+|.++..|+.. .|+++|+++ .|++.|.++ |+. ..+...+...+ ++++++||+|+|
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~-----~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~ 118 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSA-----EMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILF 118 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCH-----HHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEe
Confidence 3568999999999999888865 488999876 455555543 442 23344454555 367799999998
Q ss_pred ccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 379 DGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
..+ ++|..++..+|.++.|+|||||+|++..
T Consensus 119 ~~v-l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 119 HAV-LEWVADPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred hhH-HHhhCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 754 4567789999999999999999998864
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-11 Score=123.88 Aligned_cols=118 Identities=14% Similarity=0.199 Sum_probs=84.7
Q ss_pred CCCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
...+|||+|||+|.++..|+. ..|+++|+++ .|++.|.++.-...+...+...++ ++++||+|+|+.+ +
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~-----~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~-l 103 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSP-----AMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANAS-L 103 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCH-----HHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccC-h
Confidence 357899999999999888774 3599999875 578888776433334445555554 4579999998764 5
Q ss_pred cccccHHHHHHHHHhccCCCcEEEEEcCCCch-hHHHHHHHHHHhcceeE
Q 044932 384 TWHAHGGKLLLEMNRILRPSGYFILSTKHDSI-EEEEALTTLTASICWNI 432 (689)
Q Consensus 384 ~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~l-e~~~~ie~La~~l~W~~ 432 (689)
+|..+...+|.++.|+|||||+|++..+.... .....+.+++....|..
T Consensus 104 ~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 153 (258)
T PRK01683 104 QWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQ 153 (258)
T ss_pred hhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHH
Confidence 77888999999999999999999998654321 12223555555555654
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-11 Score=121.88 Aligned_cols=124 Identities=14% Similarity=0.160 Sum_probs=81.8
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecccccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWH 386 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~ 386 (689)
..+|||+|||+|.++.+|+.+ .|+++|+++.... ...+.+...++.......+...++++ ++||+|+|+.++.+..
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~-~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~ 108 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIA-SVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFLQ 108 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHH-HHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEecccccCC
Confidence 358999999999999888865 5999999874221 12223344566544444454455665 6899999876543322
Q ss_pred -ccHHHHHHHHHhccCCCcEEEEEc-----------CCCchhHHHHHHHHHHhcceeEEEee
Q 044932 387 -AHGGKLLLEMNRILRPSGYFILST-----------KHDSIEEEEALTTLTASICWNILAHK 436 (689)
Q Consensus 387 -~d~~~aL~EI~RVLRPGG~fVIsd-----------p~~~le~~~~ie~La~~l~W~~v~~~ 436 (689)
.+...++.+++|+|+|||++++.. +.+++....++.+++. .|+.+...
T Consensus 109 ~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~ 168 (195)
T TIGR00477 109 AGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYN 168 (195)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEee
Confidence 345689999999999999966542 1123334455666665 47776553
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-11 Score=121.12 Aligned_cols=122 Identities=16% Similarity=0.206 Sum_probs=80.2
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCC-cEEecCCCCCCCCCCCCcceEEeccccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFP-AVVSPLGNRRLPFPSGVFDAIHCDGCSITW 385 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~-~i~~~~dt~~LPFpD~SFDlVhcs~cli~W 385 (689)
..+|||+|||+|.++.+|+.+ .|+++|+++..+. ...+.+...++. ......+...++++ ++||+|+|..++ +|
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~-~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~-~~ 107 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIA-NLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVL-MF 107 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecch-hh
Confidence 358999999999999999875 5899999874221 112223334554 23344555566675 689999998654 33
Q ss_pred cc--cHHHHHHHHHhccCCCcEEEEEc-C----------CCchhHHHHHHHHHHhcceeEEEe
Q 044932 386 HA--HGGKLLLEMNRILRPSGYFILST-K----------HDSIEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 386 ~~--d~~~aL~EI~RVLRPGG~fVIsd-p----------~~~le~~~~ie~La~~l~W~~v~~ 435 (689)
.. +...++.++.|+|||||++++.. . +.+.....++.+++. +|..+..
T Consensus 108 ~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~ 168 (197)
T PRK11207 108 LEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKY 168 (197)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEe
Confidence 32 45789999999999999965532 1 112223345666665 7887654
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.3e-11 Score=133.10 Aligned_cols=98 Identities=18% Similarity=0.248 Sum_probs=76.7
Q ss_pred CCCeEEEECCccchhHHHhhc---CCeEEEEcCCcccHHHHHHHHHHc--CC--CcEEecCCCCCCCCCCCCcceEEecc
Q 044932 308 NIRVVLEIGSADLSFVASLLA---KEVLTLTVGLKDDLVDLAQVALER--GF--PAVVSPLGNRRLPFPSGVFDAIHCDG 380 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~---~~V~gmDIsp~D~seamlq~A~eR--GL--~~i~~~~dt~~LPFpD~SFDlVhcs~ 380 (689)
...+|||||||+|.++..|+. ..|+|+|+++ .|+..|.++ +. ...+...+...+||++++||+|+|..
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~-----~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~ 340 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSV-----NMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRD 340 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCH-----HHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECC
Confidence 356899999999998877764 3589999875 466666554 22 23455667777889999999999876
Q ss_pred ccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 381 CSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 381 cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
++. |..++..+|.+++|+|||||+|++.+.
T Consensus 341 ~l~-h~~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 341 TIL-HIQDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred ccc-ccCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 554 467899999999999999999999864
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-11 Score=131.25 Aligned_cols=109 Identities=19% Similarity=0.215 Sum_probs=76.9
Q ss_pred HHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHH-c--CCCcEEecCCCCCCC
Q 044932 294 ESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALE-R--GFPAVVSPLGNRRLP 367 (689)
Q Consensus 294 d~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~e-R--GL~~i~~~~dt~~LP 367 (689)
+.+...++.+ ..++|||||||+|.++.+|+.. .|+|+|.++.+.. +.+.... . .....+...+...+|
T Consensus 112 ~~l~~~l~~l----~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~--q~~a~~~~~~~~~~i~~~~~d~e~lp 185 (322)
T PRK15068 112 DRVLPHLSPL----KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLC--QFEAVRKLLGNDQRAHLLPLGIEQLP 185 (322)
T ss_pred HHHHHhhCCC----CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHH--HHHHHHHhcCCCCCeEEEeCCHHHCC
Confidence 4445455433 3479999999999999888764 3889997764221 1111111 1 123445556778889
Q ss_pred CCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 368 FPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 368 FpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
+ +++||+|+|..++. +..++..+|.+++|+|+|||.|++.+
T Consensus 186 ~-~~~FD~V~s~~vl~-H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 186 A-LKAFDTVFSMGVLY-HRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred C-cCCcCEEEECChhh-ccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 9 78999999976654 46788999999999999999999874
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-10 Score=115.98 Aligned_cols=132 Identities=20% Similarity=0.135 Sum_probs=91.4
Q ss_pred CCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHcCCC-cEEecCCCCCCCCCCCCcceEEeccccc
Q 044932 309 IRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALERGFP-AVVSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eRGL~-~i~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
..+|||+|||+|.++..++. ..|+++|+++.... ...+.+.+.++. ..+...+...+++ +++||+|+|.. .
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~-~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~-~- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIA-FLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA-V- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHH-HHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc-c-
Confidence 46899999999988776653 35999998764221 112223334554 3344555566666 68999999753 1
Q ss_pred cccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeecccc----CceeEEEEEe
Q 044932 384 TWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEI----SEMGVKIYQK 450 (689)
Q Consensus 384 ~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~----g~~~i~IwqK 450 (689)
.+...++.++.|+|||||+|++....... ..+.+++..++|.+..+...++ ++-++.|.||
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKGRDPE---EEIAELPKALGGKVEEVIELTLPGLDGERHLVIIRK 186 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeCCChH---HHHHHHHHhcCceEeeeEEEecCCCCCcEEEEEEec
Confidence 25668999999999999999999766433 3488889999999766554432 3455777776
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.7e-11 Score=112.98 Aligned_cols=98 Identities=19% Similarity=0.353 Sum_probs=76.7
Q ss_pred CCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHH----cCCC-cEEecCCCCCCC--CCCCCcce
Q 044932 308 NIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALE----RGFP-AVVSPLGNRRLP--FPSGVFDA 375 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~e----RGL~-~i~~~~dt~~LP--FpD~SFDl 375 (689)
...+|||+|||+|.++..|+. ..++++|+++ .|++.|.. .++. ..+...+...++ |+ +.||+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~-----~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~ 76 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISE-----EMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDI 76 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSH-----HHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcH-----HHHHHhhcccccccccccceEEeehhccccccC-CCeeE
Confidence 356899999999999888872 3599999986 45555554 4665 445566666677 77 89999
Q ss_pred EEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 376 IHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 376 Vhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
|++...+ ++..++..+|.++.|+|++||.+++.+..
T Consensus 77 I~~~~~l-~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 77 IISNGVL-HHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEESTG-GGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEcCch-hhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9987554 56778889999999999999999999876
|
... |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.2e-11 Score=116.05 Aligned_cols=111 Identities=24% Similarity=0.353 Sum_probs=81.5
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHc----CCCcEEecC
Q 044932 291 HYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALER----GFPAVVSPL 361 (689)
Q Consensus 291 ~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eR----GL~~i~~~~ 361 (689)
.|.+.+...+. +. ...+|||+|||+|.++..++. ..|+++|+++ .+++.|.++ +....+...
T Consensus 6 ~~~~~~~~~~~-~~---~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~-----~~~~~a~~~~~~~~~~~~~~~~ 76 (241)
T PRK08317 6 RYRARTFELLA-VQ---PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSE-----AMLALAKERAAGLGPNVEFVRG 76 (241)
T ss_pred HHHHHHHHHcC-CC---CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCH-----HHHHHHHHHhhCCCCceEEEec
Confidence 44555555544 22 357899999999998877764 2588999876 456666554 222334455
Q ss_pred CCCCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 362 GNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 362 dt~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
+...+|+++++||+|++..++ ++..++..+|.++.++|+|||++++.++
T Consensus 77 d~~~~~~~~~~~D~v~~~~~~-~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 77 DADGLPFPDGSFDAVRSDRVL-QHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred ccccCCCCCCCceEEEEechh-hccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 667788999999999987654 4466889999999999999999999875
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.24 E-value=3e-11 Score=106.44 Aligned_cols=96 Identities=21% Similarity=0.338 Sum_probs=67.6
Q ss_pred CCeEEEECCccchhHHHhhc--C--CeEEEEcCCcccHHHHHHHHHHc----CC--CcEEecCCC-CCCCCCCCCcceEE
Q 044932 309 IRVVLEIGSADLSFVASLLA--K--EVLTLTVGLKDDLVDLAQVALER----GF--PAVVSPLGN-RRLPFPSGVFDAIH 377 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~--~--~V~gmDIsp~D~seamlq~A~eR----GL--~~i~~~~dt-~~LPFpD~SFDlVh 377 (689)
..+|||+|||+|.++.+|+. . .|+++|++|. +++.|.++ +. ...+...+. ....+. ..||+|+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~-----~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~ 75 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPE-----MLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVI 75 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHH-----HHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEE
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHH-----HHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEE
Confidence 36899999999999888876 3 5999999874 44444443 22 233444444 333344 5699999
Q ss_pred ecc-cccccc--ccHHHHHHHHHhccCCCcEEEEEc
Q 044932 378 CDG-CSITWH--AHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 378 cs~-cli~W~--~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
+.. +..++. ++...+|..+.+.|+|||+|+|.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 76 CSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp ECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 987 332221 356788999999999999999975
|
... |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.1e-11 Score=116.56 Aligned_cols=98 Identities=23% Similarity=0.344 Sum_probs=76.8
Q ss_pred CCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCC-cEEecCCCCCCCCCCCCcceEEeccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFP-AVVSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~-~i~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
..+|||+|||+|.++..|+.. .++++|+++ .++..+..+..+ ..+...+...+|+++++||+|+|..+ +
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~-----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~-l 108 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISA-----GMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLA-L 108 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChH-----HHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhh-h
Confidence 468999999999998887753 478888865 566666665322 23445566788899999999998754 4
Q ss_pred cccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 384 TWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 384 ~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+|..++..+|.++.|+|+|||+|++..+.
T Consensus 109 ~~~~~~~~~l~~~~~~L~~~G~l~~~~~~ 137 (240)
T TIGR02072 109 QWCDDLSQALSELARVLKPGGLLAFSTFG 137 (240)
T ss_pred hhccCHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 67778999999999999999999998754
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.1e-11 Score=125.23 Aligned_cols=106 Identities=21% Similarity=0.223 Sum_probs=80.6
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITW 385 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W 385 (689)
...+|||||||.|.++..|+.. .|+|+|+++..+.. ....|.+.|+...+....++.|-...++||+|+|..++.|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~-Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH- 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEV-AKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH- 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHH-HHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc-
Confidence 3568999999999999888865 59999987643321 1223344566655655555666665689999999877655
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEcCCCch
Q 044932 386 HAHGGKLLLEMNRILRPSGYFILSTKHDSI 415 (689)
Q Consensus 386 ~~d~~~aL~EI~RVLRPGG~fVIsdp~~~l 415 (689)
.+++..+++...+.|||||.+++++....+
T Consensus 137 v~dp~~~~~~c~~lvkP~G~lf~STinrt~ 166 (243)
T COG2227 137 VPDPESFLRACAKLVKPGGILFLSTINRTL 166 (243)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEeccccCH
Confidence 889999999999999999999999977443
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.23 E-value=7e-11 Score=125.91 Aligned_cols=124 Identities=16% Similarity=0.146 Sum_probs=84.1
Q ss_pred CCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHc-C--CCcEEecCCCCCCCCCCCCcceEEeccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALER-G--FPAVVSPLGNRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eR-G--L~~i~~~~dt~~LPFpD~SFDlVhcs~c 381 (689)
..++|||||||+|.++..++.. .|+|+|.++.+. .+.+.+... + ....+...+...+|+. .+||+|+|..+
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml--~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gv 197 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFL--CQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGV 197 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHH--HHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcch
Confidence 3579999999999988777654 378888776322 111222221 1 1223344556677765 58999999876
Q ss_pred cccccccHHHHHHHHHhccCCCcEEEEEcCC-----------C--c--------hhHHHHHHHHHHhcceeEEEe
Q 044932 382 SITWHAHGGKLLLEMNRILRPSGYFILSTKH-----------D--S--------IEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 382 li~W~~d~~~aL~EI~RVLRPGG~fVIsdp~-----------~--~--------le~~~~ie~La~~l~W~~v~~ 435 (689)
+.| ..++..+|.+++|+|||||.|++.+.. . + +.....+..++++.||+.+..
T Consensus 198 L~H-~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i 271 (314)
T TIGR00452 198 LYH-RKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRI 271 (314)
T ss_pred hhc-cCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEE
Confidence 655 578899999999999999999987421 0 0 012346778888889987643
|
Known examples to date are restricted to the proteobacteria. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.1e-11 Score=127.14 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=88.2
Q ss_pred CCCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHcC--CCcEEecCCCCCCCCCCCCcceEEeccc
Q 044932 308 NIRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALERG--FPAVVSPLGNRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eRG--L~~i~~~~dt~~LPFpD~SFDlVhcs~c 381 (689)
...+|||||||+|.++..++. ..|+++|+++ .|++.|.++. ....+...+...+||++++||+|++...
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~-----~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~ 187 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP-----HQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCH-----HHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcCh
Confidence 346899999999998776653 3588999875 5666666542 1122345566788999999999998754
Q ss_pred cccccccHHHHHHHHHhccCCCcEEEEEcCCC--c------------hhHHHHHHHHHHhcceeEEEe
Q 044932 382 SITWHAHGGKLLLEMNRILRPSGYFILSTKHD--S------------IEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 382 li~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~--~------------le~~~~ie~La~~l~W~~v~~ 435 (689)
+ ++..++..+|.|+.|+|||||++++..+.. . ....+++.++++..+|+.+..
T Consensus 188 L-~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 188 I-EYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred h-hhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence 4 545678899999999999999998875421 1 012356778888888887654
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-10 Score=121.57 Aligned_cols=122 Identities=13% Similarity=0.162 Sum_probs=82.0
Q ss_pred CeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecccccccc-
Q 044932 310 RVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWH- 386 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~- 386 (689)
.+|||+|||+|.++.+|+.. .|+++|+++..+ ..+.+.+...++.......+....++ +++||+|+|..++.+..
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai-~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~ 199 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGFDVTAVDINQQSL-ENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNR 199 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHH-HHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCCH
Confidence 48999999999999888764 599999987422 22233444556654444455444455 58999999876543322
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEcC-----------CCchhHHHHHHHHHHhcceeEEEe
Q 044932 387 AHGGKLLLEMNRILRPSGYFILSTK-----------HDSIEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 387 ~d~~~aL~EI~RVLRPGG~fVIsdp-----------~~~le~~~~ie~La~~l~W~~v~~ 435 (689)
++...+|.++.|+|+|||++++... ...+....++.++... |+.+..
T Consensus 200 ~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 200 ERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 2456899999999999999766421 1222344567777764 887754
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.7e-10 Score=110.71 Aligned_cols=137 Identities=20% Similarity=0.271 Sum_probs=96.3
Q ss_pred CCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHc----CC--CcEEecCCCCCCCCCCCCcceEE
Q 044932 309 IRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALER----GF--PAVVSPLGNRRLPFPSGVFDAIH 377 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eR----GL--~~i~~~~dt~~LPFpD~SFDlVh 377 (689)
..+|||+|||+|.++..++. ..++++|+++ .+++.+.++ ++ ...+...+...+++++++||+|+
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~-----~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~ 126 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSE-----GMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVT 126 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCH-----HHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEE
Confidence 46899999999998776653 4588999876 345555443 12 23344556667788888999999
Q ss_pred eccccccccccHHHHHHHHHhccCCCcEEEEEcCCC--c--h------------------------------------hH
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHD--S--I------------------------------------EE 417 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~--~--l------------------------------------e~ 417 (689)
++.++ ++..++..+|.++.++|+|||++++.+... . . ..
T Consensus 127 ~~~~l-~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (239)
T PRK00216 127 IAFGL-RNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPD 205 (239)
T ss_pred Eeccc-ccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCC
Confidence 87554 445678899999999999999998864310 0 0 01
Q ss_pred HHHHHHHHHhcceeEEEeeccccCceeEEEEEeC
Q 044932 418 EEALTTLTASICWNILAHKTDEISEMGVKIYQKP 451 (689)
Q Consensus 418 ~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqKp 451 (689)
...+..+++..+|+.+.......+-..+.+.+||
T Consensus 206 ~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~ 239 (239)
T PRK00216 206 QEELAAMLEEAGFERVRYRNLTGGIVALHVGYKP 239 (239)
T ss_pred HHHHHHHHHhCCCceeeeeeeecCcEEEEEEecC
Confidence 1347778888999887766655566667777775
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-11 Score=107.71 Aligned_cols=88 Identities=27% Similarity=0.500 Sum_probs=66.7
Q ss_pred EEEECCccchhHHHhhc-------CCeEEEEcCCcccHHHHHHHHHHc----CCCcEEecCCCCCCCCCCCCcceEEecc
Q 044932 312 VLEIGSADLSFVASLLA-------KEVLTLTVGLKDDLVDLAQVALER----GFPAVVSPLGNRRLPFPSGVFDAIHCDG 380 (689)
Q Consensus 312 VLDVGCGtGsfaa~La~-------~~V~gmDIsp~D~seamlq~A~eR----GL~~i~~~~dt~~LPFpD~SFDlVhcs~ 380 (689)
|||+|||+|..+..++. ..++++|+++ .|+..|.++ ++...+...|...+|+.+++||+|+|+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~-----~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~ 75 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISP-----EMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSG 75 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-H-----HHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-T
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCH-----HHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcC
Confidence 79999999998877663 3588999875 577777665 4677777888888999999999999976
Q ss_pred cccccc--ccHHHHHHHHHhccCCCc
Q 044932 381 CSITWH--AHGGKLLLEMNRILRPSG 404 (689)
Q Consensus 381 cli~W~--~d~~~aL~EI~RVLRPGG 404 (689)
+.+++. .....+|.++.++|||||
T Consensus 76 ~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 76 LSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp TGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 644433 245789999999999998
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.8e-11 Score=120.50 Aligned_cols=98 Identities=20% Similarity=0.279 Sum_probs=73.3
Q ss_pred CCCeEEEECCccchhHHHhh---cC--CeEEEEcCCcccHHHHHHHHHHc----CCCc-EEecCCCCCCCCCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLL---AK--EVLTLTVGLKDDLVDLAQVALER----GFPA-VVSPLGNRRLPFPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La---~~--~V~gmDIsp~D~seamlq~A~eR----GL~~-i~~~~dt~~LPFpD~SFDlVh 377 (689)
...+|||+|||+|.++..++ .. .|+++|+++ .|++.|+++ ++.. .+...+...+||++++||+|+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~-----~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi 151 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTP-----EMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVII 151 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCH-----HHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEE
Confidence 35799999999997654333 22 489999876 456665543 4432 334456678899999999999
Q ss_pred eccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
+. +.+++..+...+|.|+.|+|||||+|++++.
T Consensus 152 ~~-~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 152 SN-CVINLSPDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred Ec-CcccCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 76 4556677888999999999999999999763
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-10 Score=120.85 Aligned_cols=100 Identities=21% Similarity=0.302 Sum_probs=71.6
Q ss_pred CCCeEEEECCccch----hHHHhhc---------CCeEEEEcCCcccHHHHHHHHHHc--------CCC-----------
Q 044932 308 NIRVVLEIGSADLS----FVASLLA---------KEVLTLTVGLKDDLVDLAQVALER--------GFP----------- 355 (689)
Q Consensus 308 ~~R~VLDVGCGtGs----faa~La~---------~~V~gmDIsp~D~seamlq~A~eR--------GL~----------- 355 (689)
...+|||+|||||. +|..|++ ..|+|+|+++ .|++.|++. +++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~-----~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~ 173 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDL-----KALEKARAGIYPERELEDLPKALLARYFSRV 173 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCH-----HHHHHHHcCCCCHHHHhcCCHHHHhhhEEeC
Confidence 34689999999995 4444432 2488999876 577777653 111
Q ss_pred -------------cEEecCCCCCCCCCCCCcceEEecccccccc-ccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 356 -------------AVVSPLGNRRLPFPSGVFDAIHCDGCSITWH-AHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 356 -------------~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~-~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
..+...+...+|+++++||+|+|..+++++. ++...+|.+++|+|+|||+|++....
T Consensus 174 ~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 174 EDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSE 244 (264)
T ss_pred CCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECcc
Confidence 2234556667778889999999987666543 24458999999999999999997654
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.3e-10 Score=109.48 Aligned_cols=123 Identities=19% Similarity=0.134 Sum_probs=79.0
Q ss_pred CCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHcCCC-cEEecCCCCCCCCCCCCcceEEeccccc
Q 044932 309 IRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALERGFP-AVVSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eRGL~-~i~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
..+|||+|||+|.++..|+. ..|+++|+++.+.. ...+.+.+.++. ..+...+...++. +++||+|+|.. +
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~-~a~~~~~~~~~~~i~~i~~d~~~~~~-~~~fD~I~s~~--~ 118 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVA-FLREVKAELGLNNVEIVNGRAEDFQH-EEQFDVITSRA--L 118 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHH-HHHHHHHHhCCCCeEEEecchhhccc-cCCccEEEehh--h
Confidence 46899999999988776652 35999998874321 111222334554 3344555556543 57999998753 2
Q ss_pred cccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeecc
Q 044932 384 TWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTD 438 (689)
Q Consensus 384 ~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~ 438 (689)
+ +...++..+.|+|+|||.+++........+...+.+-+...+.+.+..+.-
T Consensus 119 ~---~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 170 (181)
T TIGR00138 119 A---SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPL 170 (181)
T ss_pred h---CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeecccc
Confidence 2 455788999999999999999876655444333333444466666655443
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.15 E-value=5e-10 Score=109.41 Aligned_cols=97 Identities=21% Similarity=0.273 Sum_probs=72.7
Q ss_pred CCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHcC---CCcEEecCCCCCCCCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALERG---FPAVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eRG---L~~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
...+|||+|||+|.++..++.. .++++|+++ .++..+.++. ....+...+...+|+++++||+|+++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~-----~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~ 113 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSS-----EMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIA 113 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCH-----HHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEe
Confidence 3578999999999988777642 588888875 4555555542 12334455666788888899999987
Q ss_pred cccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 380 GCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 380 ~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
..+ ++..++..+|.++.++|+|||++++.+
T Consensus 114 ~~~-~~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 114 FGL-RNVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred eee-CCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 543 445678899999999999999999865
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.7e-10 Score=114.02 Aligned_cols=108 Identities=16% Similarity=0.143 Sum_probs=75.7
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCC
Q 044932 292 YLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLP 367 (689)
Q Consensus 292 Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LP 367 (689)
++..+.+.+..+. ...+|||+|||+|.++..|+.. .++|+|+++ .|++.|+++.....+...+... |
T Consensus 30 ~~~~~~~~l~~~~---~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~-----~~l~~A~~~~~~~~~~~~d~~~-~ 100 (204)
T TIGR03587 30 KLAMFARALNRLP---KIASILELGANIGMNLAALKRLLPFKHIYGVEINE-----YAVEKAKAYLPNINIIQGSLFD-P 100 (204)
T ss_pred HHHHHHHHHHhcC---CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCH-----HHHHHHHhhCCCCcEEEeeccC-C
Confidence 3444444443222 3468999999999988877643 489999875 5788887753222333444445 8
Q ss_pred CCCCCcceEEecccccccc-ccHHHHHHHHHhccCCCcEEEEEc
Q 044932 368 FPSGVFDAIHCDGCSITWH-AHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 368 FpD~SFDlVhcs~cli~W~-~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
|++++||+|+|..++.|+. .+...++.|+.|++ +++++|.+
T Consensus 101 ~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 101 FKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred CCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 9999999999987766643 24578999999998 57888875
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-10 Score=116.34 Aligned_cols=97 Identities=13% Similarity=0.121 Sum_probs=71.4
Q ss_pred CCCeEEEECCccchhHHHhhc------CCeEEEEcCCcccHHHHHHHHHHc----C--CCcEEecCCCCCCCCCCCCcce
Q 044932 308 NIRVVLEIGSADLSFVASLLA------KEVLTLTVGLKDDLVDLAQVALER----G--FPAVVSPLGNRRLPFPSGVFDA 375 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~------~~V~gmDIsp~D~seamlq~A~eR----G--L~~i~~~~dt~~LPFpD~SFDl 375 (689)
...+|||+|||+|.++..|+. ..|+++|+++ .|+..|.++ + ....+...+...+|++ .||+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~-----~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~ 125 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQ-----PMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASM 125 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCH-----HHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCE
Confidence 346899999999998877654 2489999876 466666553 2 2234555666777776 5899
Q ss_pred EEeccccccccc--cHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 376 IHCDGCSITWHA--HGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 376 Vhcs~cli~W~~--d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
|+|...+ ||.. +...+|.++.|+|+|||.|+++++.
T Consensus 126 v~~~~~l-~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 126 VILNFTL-QFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred Eeeecch-hhCCHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 9887654 4442 4578999999999999999999763
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.9e-10 Score=111.93 Aligned_cols=118 Identities=19% Similarity=0.205 Sum_probs=82.3
Q ss_pred eEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHH----cCCCc--EEecCCCCCCCCCCCCcceEEecc
Q 044932 311 VVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALE----RGFPA--VVSPLGNRRLPFPSGVFDAIHCDG 380 (689)
Q Consensus 311 ~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~e----RGL~~--i~~~~dt~~LPFpD~SFDlVhcs~ 380 (689)
+|||||||+|.++..++. ..|+++|+++ .++..|.+ .|+.. .+...+....|++ ++||+|++..
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~-----~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~ 75 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISP-----EQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFE 75 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCH-----HHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHH
Confidence 699999999998877764 3588999876 45555544 34432 3334455555776 5899999865
Q ss_pred ccccccccHHHHHHHHHhccCCCcEEEEEcCCC-------------chhHHHHHHHHHHhcceeEEEe
Q 044932 381 CSITWHAHGGKLLLEMNRILRPSGYFILSTKHD-------------SIEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 381 cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~-------------~le~~~~ie~La~~l~W~~v~~ 435 (689)
++ ++..+...+|.++.|+|||||+|++.+... +......+..++...++..+..
T Consensus 76 ~l-~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 76 VI-HHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred HH-HhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEe
Confidence 44 445678899999999999999999986421 0112245667777788877643
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-10 Score=117.63 Aligned_cols=125 Identities=19% Similarity=0.195 Sum_probs=80.1
Q ss_pred cchhHHHHHHHHHhhcccc--cCCCCCCeEEEECCccchhHHHhhc---CCeEEEEcCCcccHHHHHHHHHHcCCCcE-E
Q 044932 285 FKGGVLHYLESIEEMVPDI--EWGKNIRVVLEIGSADLSFVASLLA---KEVLTLTVGLKDDLVDLAQVALERGFPAV-V 358 (689)
Q Consensus 285 F~~ga~~Yid~L~~~Lp~l--~~G~~~R~VLDVGCGtGsfaa~La~---~~V~gmDIsp~D~seamlq~A~eRGL~~i-~ 358 (689)
+...++.|...|-.-+-.+ +.+ -..||+||||||..-.++-. ..|+.+|-++.+..-+...++..+-+... +
T Consensus 53 yne~~~~ykrelFs~i~~~~gk~~--K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~f 130 (252)
T KOG4300|consen 53 YNEIADSYKRELFSGIYYFLGKSG--KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERF 130 (252)
T ss_pred HHHHHHHHHHHHHhhhHHHhcccC--ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEE
Confidence 4455667755443321111 122 23589999999975545442 24666665554322111122222333333 4
Q ss_pred ecCCCCCCC-CCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 359 SPLGNRRLP-FPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 359 ~~~dt~~LP-FpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
.+++.+.|| ++|+|+|.|+|..|+-. +.++.+.|.|+.|+|||||++++....
T Consensus 131 vva~ge~l~~l~d~s~DtVV~TlvLCS-ve~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 131 VVADGENLPQLADGSYDTVVCTLVLCS-VEDPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred EeechhcCcccccCCeeeEEEEEEEec-cCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 466778999 89999999999865433 569999999999999999999998765
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.7e-10 Score=115.34 Aligned_cols=103 Identities=23% Similarity=0.291 Sum_probs=81.1
Q ss_pred HHHHhhcccccCCCCCCeEEEECCccchhHHHhhc-CC--eEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCC-CC
Q 044932 294 ESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA-KE--VLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLP-FP 369 (689)
Q Consensus 294 d~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~-~~--V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LP-Fp 369 (689)
+.|.++++ +..+|||+|||.|.+.++|.+ ++ ..|+++++ +.+..+.+||++.+.+.++. .|+ |+
T Consensus 5 ~~I~~~I~------pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~-----~~v~~cv~rGv~Viq~Dld~-gL~~f~ 72 (193)
T PF07021_consen 5 QIIAEWIE------PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDP-----DNVAACVARGVSVIQGDLDE-GLADFP 72 (193)
T ss_pred HHHHHHcC------CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCH-----HHHHHHHHcCCCEEECCHHH-hHhhCC
Confidence 45666665 347899999999999999986 44 56677654 56888899999988877664 454 99
Q ss_pred CCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 370 SGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 370 D~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
|++||.|+++..+-+ ..+|..+|.||.|| |...+++-|.
T Consensus 73 d~sFD~VIlsqtLQ~-~~~P~~vL~EmlRV---gr~~IVsFPN 111 (193)
T PF07021_consen 73 DQSFDYVILSQTLQA-VRRPDEVLEEMLRV---GRRAIVSFPN 111 (193)
T ss_pred CCCccEEehHhHHHh-HhHHHHHHHHHHHh---cCeEEEEecC
Confidence 999999999876654 56889999999888 6688888776
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.3e-10 Score=131.33 Aligned_cols=98 Identities=14% Similarity=0.167 Sum_probs=72.9
Q ss_pred CCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHc----CCCcEEecCCCCCCC--CCCCCcceEEe
Q 044932 309 IRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALER----GFPAVVSPLGNRRLP--FPSGVFDAIHC 378 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eR----GL~~i~~~~dt~~LP--FpD~SFDlVhc 378 (689)
..+|||+|||+|.++..|+. ..|+|+|+++ .|++.|.++ +....+...+...+| |++++||+|++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~-----~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISE-----NVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCH-----HHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEE
Confidence 46899999999998776653 3699999886 456665543 333334445666777 88999999998
Q ss_pred cccccccc------------ccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 379 DGCSITWH------------AHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 379 s~cli~W~------------~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
+.++.+|. .+...+|.++.|+|||||+|++.+.
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 75443331 2457899999999999999999874
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.2e-10 Score=118.56 Aligned_cols=142 Identities=22% Similarity=0.291 Sum_probs=99.1
Q ss_pred cccchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcCC---eEEEEcCCcccHHHHHHHHHHc-CCCcEE
Q 044932 283 SEFKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAKE---VLTLTVGLKDDLVDLAQVALER-GFPAVV 358 (689)
Q Consensus 283 t~F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~~---V~gmDIsp~D~seamlq~A~eR-GL~~i~ 358 (689)
+.|..... ++.|...++.+ .+++|||||||.|.++.+|+.++ |+|+|-++. .-.+-.++.+- |....+
T Consensus 96 tEWrSd~K--W~rl~p~l~~L----~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~l--f~~QF~~i~~~lg~~~~~ 167 (315)
T PF08003_consen 96 TEWRSDWK--WDRLLPHLPDL----KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPL--FYLQFEAIKHFLGQDPPV 167 (315)
T ss_pred ccccccch--HHHHHhhhCCc----CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChH--HHHHHHHHHHHhCCCccE
Confidence 45544443 56677777655 46899999999999999998764 777765542 22222222221 222222
Q ss_pred --ecCCCCCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcC------------CC---------ch
Q 044932 359 --SPLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK------------HD---------SI 415 (689)
Q Consensus 359 --~~~dt~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp------------~~---------~l 415 (689)
..++.+.||. .++||+|+|.++++| ..+|-..|.++...|||||.+++.+- .. ++
T Consensus 168 ~~lplgvE~Lp~-~~~FDtVF~MGVLYH-rr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~Fi 245 (315)
T PF08003_consen 168 FELPLGVEDLPN-LGAFDTVFSMGVLYH-RRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFI 245 (315)
T ss_pred EEcCcchhhccc-cCCcCEEEEeeehhc-cCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEe
Confidence 2356788888 689999999988877 78999999999999999999998642 10 01
Q ss_pred hHHHHHHHHHHhcceeEEE
Q 044932 416 EEEEALTTLTASICWNILA 434 (689)
Q Consensus 416 e~~~~ie~La~~l~W~~v~ 434 (689)
.....+...+++.+|+.+.
T Consensus 246 Ps~~~L~~wl~r~gF~~v~ 264 (315)
T PF08003_consen 246 PSVAALKNWLERAGFKDVR 264 (315)
T ss_pred CCHHHHHHHHHHcCCceEE
Confidence 2346788999999998764
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.7e-10 Score=115.28 Aligned_cols=96 Identities=15% Similarity=0.110 Sum_probs=69.7
Q ss_pred CCCeEEEECCccchhHHHhhc------CCeEEEEcCCcccHHHHHHHHHHc----CC--CcEEecCCCCCCCCCCCCcce
Q 044932 308 NIRVVLEIGSADLSFVASLLA------KEVLTLTVGLKDDLVDLAQVALER----GF--PAVVSPLGNRRLPFPSGVFDA 375 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~------~~V~gmDIsp~D~seamlq~A~eR----GL--~~i~~~~dt~~LPFpD~SFDl 375 (689)
...+|||||||+|.++..|+. ..|+++|+++ .|++.|+++ ++ ...+...+...+|++ .||+
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~-----~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~ 128 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSP-----AMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASM 128 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCH-----HHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCE
Confidence 346899999999998876654 2589999876 466666554 33 234455566677776 4999
Q ss_pred EEeccccccccc--cHHHHHHHHHhccCCCcEEEEEcC
Q 044932 376 IHCDGCSITWHA--HGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 376 Vhcs~cli~W~~--d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
|+|..++ ++.. +...+|.++.|+|||||.|++++.
T Consensus 129 vv~~~~l-~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 129 VVLNFTL-QFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred EehhhHH-HhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 9987554 3332 346799999999999999999874
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.4e-10 Score=111.12 Aligned_cols=117 Identities=20% Similarity=0.220 Sum_probs=80.3
Q ss_pred CCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHH----cCCC-cEEecCCC-CCCC--CCCCCcceE
Q 044932 309 IRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALE----RGFP-AVVSPLGN-RRLP--FPSGVFDAI 376 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~e----RGL~-~i~~~~dt-~~LP--FpD~SFDlV 376 (689)
..+|||+|||+|.++..|+. ..|+++|+++. |++.|.+ .++. ..+...++ ..++ +++++||+|
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~-----~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V 115 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEP-----GVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRI 115 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechH-----HHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceE
Confidence 56899999999998877764 25999999874 4444433 3443 33445565 5666 888999999
Q ss_pred Eeccccccccc--------cHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEE
Q 044932 377 HCDGCSITWHA--------HGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 377 hcs~cli~W~~--------d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v 433 (689)
++..+ .+|.. ....+|.++.|+|||||+|++........ ..+.+.++..+|...
T Consensus 116 ~~~~~-~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~--~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 116 YLNFP-DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYA--EYMLEVLSAEGGFLV 177 (202)
T ss_pred EEECC-CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHH--HHHHHHHHhCccccc
Confidence 98643 24432 13578999999999999999987653221 235555666666443
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-09 Score=110.76 Aligned_cols=126 Identities=13% Similarity=0.214 Sum_probs=81.7
Q ss_pred CCeEEEECCccchhHHHhhc-CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccccccc
Q 044932 309 IRVVLEIGSADLSFVASLLA-KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWHA 387 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~-~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~~ 387 (689)
..+|-|+|||.+.+|..+.. ..|...|+.+.. + .+...|+..+|++|+++|++++...++ ..
T Consensus 73 ~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n--------------~-~Vtacdia~vPL~~~svDv~VfcLSLM--GT 135 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPN--------------P-RVTACDIANVPLEDESVDVAVFCLSLM--GT 135 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S---EEEEESS-SS--------------T-TEEES-TTS-S--TT-EEEEEEES-----SS
T ss_pred CEEEEECCCchHHHHHhcccCceEEEeeccCCC--------------C-CEEEecCccCcCCCCceeEEEEEhhhh--CC
Confidence 46899999999999977653 358888876421 1 234567789999999999998754443 34
Q ss_pred cHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccccCceeEEEEEeCC
Q 044932 388 HGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEISEMGVKIYQKPE 452 (689)
Q Consensus 388 d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqKp~ 452 (689)
+...+|.|.+|||||||.|+|.+...-+...+.+...++++||+....+. ....-.+..++|..
T Consensus 136 n~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~-~n~~F~~f~F~K~~ 199 (219)
T PF05148_consen 136 NWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDE-SNKHFVLFEFKKIR 199 (219)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE---STTEEEEEEEE-S
T ss_pred CcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEeccc-CCCeEEEEEEEEcC
Confidence 66799999999999999999998765555556677889999999987543 33455677888865
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.6e-11 Score=103.54 Aligned_cols=92 Identities=17% Similarity=0.158 Sum_probs=49.6
Q ss_pred EEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCC-cEEecCCCCCC--CCCCCCcceEEeccccccc
Q 044932 313 LEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFP-AVVSPLGNRRL--PFPSGVFDAIHCDGCSITW 385 (689)
Q Consensus 313 LDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~-~i~~~~dt~~L--PFpD~SFDlVhcs~cli~W 385 (689)
||+|||+|.++..++.. .++++|+++.+...+. +...+.+.. .....+....+ ..+.++||+|+++.++ +|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl-~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERAR-ERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVL-HH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTC-CCHHHCT---EEEEE--SSS---CCC----SEEEEE-TT-S-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHhhhcCCcceeEEEeecCChhhcccccccceehhhhhH-hh
Confidence 89999999988777654 4899999986431111 111222211 11122222121 1222699999988654 55
Q ss_pred cccHHHHHHHHHhccCCCcEE
Q 044932 386 HAHGGKLLLEMNRILRPSGYF 406 (689)
Q Consensus 386 ~~d~~~aL~EI~RVLRPGG~f 406 (689)
.++...+|..+.++|||||+|
T Consensus 79 l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 LEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhHHHHHHHHHHHcCCCCCC
Confidence 688999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-09 Score=114.16 Aligned_cols=122 Identities=22% Similarity=0.269 Sum_probs=75.9
Q ss_pred ecCCCCcccchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHH---
Q 044932 277 TFPQNQSEFKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVAL--- 350 (689)
Q Consensus 277 ~Fpgggt~F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~--- 350 (689)
.|+.+..........-++.+.+.+. ++ ++.+|||||||.|+++.+++.+ .|+|+.+|+ .|.+.|.
T Consensus 35 ~~~~~~~~Le~AQ~~k~~~~~~~~~-l~---~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~-----~Q~~~a~~~~ 105 (273)
T PF02353_consen 35 YFDEGDDTLEEAQERKLDLLCEKLG-LK---PGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSE-----EQAEYARERI 105 (273)
T ss_dssp --SSTT--HHHHHHHHHHHHHTTTT------TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-H-----HHHHHHHHHH
T ss_pred ecCCchhhHHHHHHHHHHHHHHHhC-CC---CCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCH-----HHHHHHHHHH
Confidence 4566555555555554555555543 33 4579999999999999998865 577787765 4555554
Q ss_pred -HcCCCc--EEecCCCCCCCCCCCCcceEEeccccccc-cccHHHHHHHHHhccCCCcEEEEEc
Q 044932 351 -ERGFPA--VVSPLGNRRLPFPSGVFDAIHCDGCSITW-HAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 351 -eRGL~~--i~~~~dt~~LPFpD~SFDlVhcs~cli~W-~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
++|+.. .+...|...++ .+||.|++..++-|. ..+...+|..+.|+|+|||.+++..
T Consensus 106 ~~~gl~~~v~v~~~D~~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 106 REAGLEDRVEVRLQDYRDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp HCSTSSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred HhcCCCCceEEEEeeccccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 457653 33344444443 399999987655443 2466799999999999999999864
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.2e-09 Score=105.90 Aligned_cols=140 Identities=18% Similarity=0.213 Sum_probs=83.4
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc--CCCcE-EecCCCCCCCCCCCCcceEEecccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER--GFPAV-VSPLGNRRLPFPSGVFDAIHCDGCS 382 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR--GL~~i-~~~~dt~~LPFpD~SFDlVhcs~cl 382 (689)
.++++||+|||.|.|+..|+.+ .++++|+++ .+++.|++| +.+.+ +...+... .+|.+.||+|+++..+
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~-----~Al~~Ar~Rl~~~~~V~~~~~dvp~-~~P~~~FDLIV~SEVl 116 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISP-----RALARARERLAGLPHVEWIQADVPE-FWPEGRFDLIVLSEVL 116 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-H-----HHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-G
T ss_pred ccceeEecCCCccHHHHHHHHhhCceEEEeCCH-----HHHHHHHHhcCCCCCeEEEECcCCC-CCCCCCeeEEEEehHh
Confidence 6789999999999999999986 589999875 578888887 33332 33333222 3688999999999776
Q ss_pred ccccc--cHHHHHHHHHhccCCCcEEEEEcCCCch-------hHHHHHHHHHHhcceeEEEe--eccccC-ceeEEEEEe
Q 044932 383 ITWHA--HGGKLLLEMNRILRPSGYFILSTKHDSI-------EEEEALTTLTASICWNILAH--KTDEIS-EMGVKIYQK 450 (689)
Q Consensus 383 i~W~~--d~~~aL~EI~RVLRPGG~fVIsdp~~~l-------e~~~~ie~La~~l~W~~v~~--~~~~~g-~~~i~IwqK 450 (689)
+.+.+ +...++..+...|+|||.|++....+.. .--+.|.++++..-=++-.. .+...+ ..-++-++|
T Consensus 117 YYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (201)
T PF05401_consen 117 YYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECRGGSPNEDCLLARFRN 196 (201)
T ss_dssp GGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SSTTSEEEEEEEE-
T ss_pred HcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEcCCCCCCceEeeeecC
Confidence 65543 4567899999999999999998754211 11234556655543322111 111112 234666777
Q ss_pred CCC
Q 044932 451 PES 453 (689)
Q Consensus 451 p~~ 453 (689)
|.+
T Consensus 197 ~~~ 199 (201)
T PF05401_consen 197 PVS 199 (201)
T ss_dssp -SS
T ss_pred CcC
Confidence 654
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.1e-09 Score=105.45 Aligned_cols=124 Identities=19% Similarity=0.196 Sum_probs=80.9
Q ss_pred CCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHc----CCCcEEecCCCCCCCCCCCCcceEEecc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALER----GFPAVVSPLGNRRLPFPSGVFDAIHCDG 380 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eR----GL~~i~~~~dt~~LPFpD~SFDlVhcs~ 380 (689)
...+|||+|||+|.++.+++.. .|+++|+++. +++.|.++ ++...+ .++..+.+||+|+|..
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~-----~l~~A~~n~~~~~~~~~~------~~~~~~~~fD~Vvani 187 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQ-----AVEAARENAELNGVELNV------YLPQGDLKADVIVANI 187 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHH-----HHHHHHHHHHHcCCCceE------EEccCCCCcCEEEEcC
Confidence 3578999999999887766543 3899999874 45554443 432111 1223334899999853
Q ss_pred ccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccccCceeEEEEEe
Q 044932 381 CSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEISEMGVKIYQK 450 (689)
Q Consensus 381 cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqK 450 (689)
.. .....++.++.|+|||||+|++++... .....+...+...+|..+..... ++-..++++|
T Consensus 188 ~~----~~~~~l~~~~~~~LkpgG~lilsgi~~--~~~~~v~~~l~~~Gf~~~~~~~~--~~W~~~~~~~ 249 (250)
T PRK00517 188 LA----NPLLELAPDLARLLKPGGRLILSGILE--EQADEVLEAYEEAGFTLDEVLER--GEWVALVGKK 249 (250)
T ss_pred cH----HHHHHHHHHHHHhcCCCcEEEEEECcH--hhHHHHHHHHHHCCCEEEEEEEe--CCEEEEEEEe
Confidence 21 123468899999999999999997542 22345777888889988754432 3333445554
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.5e-09 Score=100.64 Aligned_cols=120 Identities=18% Similarity=0.060 Sum_probs=78.6
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH----cCCCcEEecCCCCCCCCCCCCcceEEecccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE----RGFPAVVSPLGNRRLPFPSGVFDAIHCDGCS 382 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e----RGL~~i~~~~dt~~LPFpD~SFDlVhcs~cl 382 (689)
..+|||+|||+|.++..++.. .|+++|+++. +++.|.+ .++...+...+.... ..++||+|++....
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~~~~~d~~~~--~~~~fD~Vi~n~p~ 92 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGKCILTTDINPF-----AVKELRENAKLNNVGLDVVMTDLFKG--VRGKFDVILFNPPY 92 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCCEEEEEECCHH-----HHHHHHHHHHHcCCceEEEEcccccc--cCCcccEEEECCCC
Confidence 357999999999998888765 4899998874 4444433 344333344443333 24699999986433
Q ss_pred cccccc--------------------HHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeec
Q 044932 383 ITWHAH--------------------GGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKT 437 (689)
Q Consensus 383 i~W~~d--------------------~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~ 437 (689)
++.... ...+|.++.|+|+|||.+++..+...- ...+..+++..+|.......
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~--~~~~~~~l~~~gf~~~~~~~ 165 (179)
T TIGR00537 93 LPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNG--EPDTFDKLDERGFRYEIVAE 165 (179)
T ss_pred CCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCC--hHHHHHHHHhCCCeEEEEEE
Confidence 221110 246799999999999999998754321 12366778888888765443
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.8e-09 Score=104.49 Aligned_cols=121 Identities=17% Similarity=0.223 Sum_probs=82.9
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc----CC--CcEEecCCCCCCCCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER----GF--PAVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR----GL--~~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
...+|||+|||+|.++.+|+.. .|+|+|+++ .|+..|+++ +. ...+...+...++ ++||+|++.
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~-----~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~ 126 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGAIVKAVDISE-----QMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCM 126 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEh
Confidence 3578999999999999888764 588999876 456666554 22 2334445555544 799999987
Q ss_pred ccccccc-ccHHHHHHHHHhccCCCcEEEEEcCCCch---------------------hHHHHHHHHHHhcceeEEEee
Q 044932 380 GCSITWH-AHGGKLLLEMNRILRPSGYFILSTKHDSI---------------------EEEEALTTLTASICWNILAHK 436 (689)
Q Consensus 380 ~cli~W~-~d~~~aL~EI~RVLRPGG~fVIsdp~~~l---------------------e~~~~ie~La~~l~W~~v~~~ 436 (689)
..++++. .+...++.++.|++++++++.+....... ...+.+..+++..+|+++...
T Consensus 127 ~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 205 (219)
T TIGR02021 127 DVLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREG 205 (219)
T ss_pred hHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeee
Confidence 6655543 34578899999999988777765322100 122457788888888877553
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.4e-09 Score=103.99 Aligned_cols=88 Identities=23% Similarity=0.293 Sum_probs=65.7
Q ss_pred CCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCC-CCCCCCcceEEecccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRL-PFPSGVFDAIHCDGCSIT 384 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~L-PFpD~SFDlVhcs~cli~ 384 (689)
..+|||+|||+|.++..|+.. .++++|+++ .++..|..+++......+. ..+ ++++++||+|+|+.+ ++
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~-----~~i~~a~~~~~~~~~~d~~-~~l~~~~~~sfD~Vi~~~~-l~ 86 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQ-----DGVLACVARGVNVIQGDLD-EGLEAFPDKSFDYVILSQT-LQ 86 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCH-----HHHHHHHHcCCeEEEEEhh-hcccccCCCCcCEEEEhhH-hH
Confidence 358999999999998888643 467888764 5777777777655444332 224 488899999999764 45
Q ss_pred ccccHHHHHHHHHhccCCC
Q 044932 385 WHAHGGKLLLEMNRILRPS 403 (689)
Q Consensus 385 W~~d~~~aL~EI~RVLRPG 403 (689)
|..++..+|.|+.|+++++
T Consensus 87 ~~~d~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 87 ATRNPEEILDEMLRVGRHA 105 (194)
T ss_pred cCcCHHHHHHHHHHhCCeE
Confidence 6778999999999987753
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.6e-09 Score=100.84 Aligned_cols=113 Identities=16% Similarity=0.148 Sum_probs=75.5
Q ss_pred CCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHH----cCCCc-EEecCCCCCCCCCCCCcceEEec
Q 044932 309 IRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALE----RGFPA-VVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~e----RGL~~-i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
..+|||+|||+|.++..++. ..|+++|+++. +++.|.+ .++.. .+...+. ..+++ .+||+|++.
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~-----~~~~a~~n~~~~~~~~i~~~~~d~-~~~~~-~~~D~v~~~ 104 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPD-----ALRLIKENRQRFGCGNIDIIPGEA-PIELP-GKADAIFIG 104 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHH-----HHHHHHHHHHHhCCCCeEEEecCc-hhhcC-cCCCEEEEC
Confidence 46899999999999877764 25899999874 4444432 34432 2333332 23454 689999986
Q ss_pred cccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEE
Q 044932 380 GCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 380 ~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~ 434 (689)
... . ....++.++.++|+|||+|++.... ......+..+++..+|..+.
T Consensus 105 ~~~-~---~~~~~l~~~~~~Lk~gG~lv~~~~~--~~~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 105 GSG-G---NLTAIIDWSLAHLHPGGRLVLTFIL--LENLHSALAHLEKCGVSELD 153 (187)
T ss_pred CCc-c---CHHHHHHHHHHhcCCCeEEEEEEec--HhhHHHHHHHHHHCCCCcce
Confidence 432 1 3457899999999999999987532 12234466788888886543
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.7e-10 Score=114.86 Aligned_cols=135 Identities=18% Similarity=0.235 Sum_probs=98.8
Q ss_pred HHhhcccccCCCCCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCC-CC-CCCC
Q 044932 296 IEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRR-LP-FPSG 371 (689)
Q Consensus 296 L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~-LP-FpD~ 371 (689)
|.+||.....| ..+++||+|||||.++..|... .++|+||| ++|+..|.++|+--.+.+.+... ++ ..+.
T Consensus 114 l~emI~~~~~g-~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS-----~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~e 187 (287)
T COG4976 114 LAEMIGKADLG-PFRRMLDLGCGTGLTGEALRDMADRLTGVDIS-----ENMLAKAHEKGLYDTLYVAEAVLFLEDLTQE 187 (287)
T ss_pred HHHHHHhccCC-ccceeeecccCcCcccHhHHHHHhhccCCchh-----HHHHHHHHhccchHHHHHHHHHHHhhhccCC
Confidence 34444433434 5899999999999999888764 57888875 68999999998754444333221 22 4468
Q ss_pred CcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC-------------CchhHHHHHHHHHHhcceeEEEeec
Q 044932 372 VFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH-------------DSIEEEEALTTLTASICWNILAHKT 437 (689)
Q Consensus 372 SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~-------------~~le~~~~ie~La~~l~W~~v~~~~ 437 (689)
.||+|.+..++ ++..+.+.++.-+.+.|.|||.|++|... .+-..+..+..++..-+++++....
T Consensus 188 r~DLi~AaDVl-~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ 265 (287)
T COG4976 188 RFDLIVAADVL-PYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIED 265 (287)
T ss_pred cccchhhhhHH-HhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeec
Confidence 99999987554 45778889999999999999999999532 1112346788999999999987644
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.1e-09 Score=117.27 Aligned_cols=109 Identities=25% Similarity=0.305 Sum_probs=74.7
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHc--CCCcEEecCCCCC
Q 044932 291 HYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALER--GFPAVVSPLGNRR 365 (689)
Q Consensus 291 ~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eR--GL~~i~~~~dt~~ 365 (689)
..++.|.+.+. +. +..+|||||||+|.++.+++.. .|+++|+++ .|++.|.++ ++...+...+...
T Consensus 154 ~k~~~l~~~l~-l~---~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~-----~~l~~A~~~~~~l~v~~~~~D~~~ 224 (383)
T PRK11705 154 AKLDLICRKLQ-LK---PGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISA-----EQQKLAQERCAGLPVEIRLQDYRD 224 (383)
T ss_pred HHHHHHHHHhC-CC---CCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHhccCeEEEEECchhh
Confidence 34455544443 22 3578999999999999888753 588888875 577777765 3333333344433
Q ss_pred CCCCCCCcceEEeccccccc-cccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 366 LPFPSGVFDAIHCDGCSITW-HAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 366 LPFpD~SFDlVhcs~cli~W-~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
+ +++||+|++...+.|. ..+...+|.++.|+|||||++++...
T Consensus 225 l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 225 L---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred c---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 3 4799999986544332 13457899999999999999999764
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-09 Score=109.77 Aligned_cols=96 Identities=14% Similarity=0.093 Sum_probs=68.5
Q ss_pred CCCeEEEECCccchhHHHhhc--------CCeEEEEcCCcccHHHHHHHHHHcCC--CcEEecCCCCCCCCCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLA--------KEVLTLTVGLKDDLVDLAQVALERGF--PAVVSPLGNRRLPFPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~--------~~V~gmDIsp~D~seamlq~A~eRGL--~~i~~~~dt~~LPFpD~SFDlVh 377 (689)
+..+|||+|||+|.++..|+. ..|+|+|+++ .|++.|.++.. ...+...+...+++++++||+|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~-----~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~ 134 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDP-----RAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVT 134 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCH-----HHHHHHHhccccCCCeEEEEecccccccCCCccEEE
Confidence 456899999999998777653 2588898876 57777776521 12233344556778889999999
Q ss_pred eccccccccccH--HHHHHHHHhccCCCcEEEEEcC
Q 044932 378 CDGCSITWHAHG--GKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 378 cs~cli~W~~d~--~~aL~EI~RVLRPGG~fVIsdp 411 (689)
|+.++ ||..++ ..+|.|+.|+|| |.+++.+.
T Consensus 135 ~~~~l-hh~~d~~~~~~l~~~~r~~~--~~~~i~dl 167 (232)
T PRK06202 135 SNHFL-HHLDDAEVVRLLADSAALAR--RLVLHNDL 167 (232)
T ss_pred ECCee-ecCChHHHHHHHHHHHHhcC--eeEEEecc
Confidence 98765 445443 479999999999 56666654
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.3e-09 Score=109.58 Aligned_cols=114 Identities=13% Similarity=0.141 Sum_probs=75.0
Q ss_pred CCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHH----cCCCcEEecCCCCCCCCCCCCcceEEeccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALE----RGFPAVVSPLGNRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~e----RGL~~i~~~~dt~~LPFpD~SFDlVhcs~c 381 (689)
..+|||+|||+|.++.+++.. .|+++|+++. +++.|++ .++...+.......+++.+++||+|+|...
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~-----al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~ 234 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPL-----AVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANIL 234 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHH-----HHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecC
Confidence 478999999999987666543 5899999874 4444443 344332222111133455789999998532
Q ss_pred cccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEE
Q 044932 382 SITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 382 li~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~ 434 (689)
.+ ....++.++.|+|||||+|+++.... .....+.+.+++. |..+.
T Consensus 235 -~~---~l~~ll~~~~~~LkpgG~li~sgi~~--~~~~~v~~~~~~~-f~~~~ 280 (288)
T TIGR00406 235 -AE---VIKELYPQFSRLVKPGGWLILSGILE--TQAQSVCDAYEQG-FTVVE 280 (288)
T ss_pred -HH---HHHHHHHHHHHHcCCCcEEEEEeCcH--hHHHHHHHHHHcc-Cceee
Confidence 11 23478999999999999999998642 2234466666665 76654
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.4e-09 Score=107.51 Aligned_cols=92 Identities=13% Similarity=0.108 Sum_probs=63.9
Q ss_pred CCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCC--------CCCCCCcce
Q 044932 309 IRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRL--------PFPSGVFDA 375 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~L--------PFpD~SFDl 375 (689)
..+|||+|||+|.++..++.. .|+++|+++. ... .++ .+...|...+ ++++.+||+
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~------~~~---~~v--~~i~~D~~~~~~~~~i~~~~~~~~~D~ 120 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM------DPI---VGV--DFLQGDFRDELVLKALLERVGDSKVQV 120 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc------cCC---CCc--EEEecCCCChHHHHHHHHHhCCCCCCE
Confidence 468999999999998777643 4999999861 111 122 2334444443 367889999
Q ss_pred EEeccccccccccH-----------HHHHHHHHhccCCCcEEEEEcCC
Q 044932 376 IHCDGCSITWHAHG-----------GKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 376 Vhcs~cli~W~~d~-----------~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
|+|..+ .+|..++ ..+|.++.|+|||||.|++....
T Consensus 121 V~S~~~-~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 121 VMSDMA-PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred EecCCC-CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 998643 2333221 46899999999999999997644
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.5e-09 Score=109.97 Aligned_cols=125 Identities=12% Similarity=0.175 Sum_probs=93.5
Q ss_pred CCeEEEECCccchhHHHhhcCCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecccccccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWHAH 388 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~~d 388 (689)
...|-|+|||.|.+|. -....|+.+|+.+.. ..+...|+.++|++|+|.|++++...+ ...+
T Consensus 181 ~~vIaD~GCGEakiA~-~~~~kV~SfDL~a~~---------------~~V~~cDm~~vPl~d~svDvaV~CLSL--Mgtn 242 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIAS-SERHKVHSFDLVAVN---------------ERVIACDMRNVPLEDESVDVAVFCLSL--MGTN 242 (325)
T ss_pred ceEEEecccchhhhhh-ccccceeeeeeecCC---------------CceeeccccCCcCccCcccEEEeeHhh--hccc
Confidence 4689999999998765 223468999986531 123456778899999999999863322 3457
Q ss_pred HHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccccCceeEEEEEeCC
Q 044932 389 GGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEISEMGVKIYQKPE 452 (689)
Q Consensus 389 ~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqKp~ 452 (689)
...++.|++|||+|||.++|..-..-+.+...+.+.+..|||..... .......++..++|+.
T Consensus 243 ~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~-d~~n~~F~lfefkK~~ 305 (325)
T KOG3045|consen 243 LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHK-DVSNKYFTLFEFKKTP 305 (325)
T ss_pred HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeeh-hhhcceEEEEEEecCC
Confidence 78999999999999999999987665555556888899999988654 3334556678888865
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.5e-09 Score=105.49 Aligned_cols=122 Identities=18% Similarity=0.255 Sum_probs=77.2
Q ss_pred CCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCc-EEecCCCCCCC---CCCCCcceEEecc
Q 044932 309 IRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPA-VVSPLGNRRLP---FPSGVFDAIHCDG 380 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~-i~~~~dt~~LP---FpD~SFDlVhcs~ 380 (689)
..+|||||||+|.++..|+.. .|+++|+++... ..+...+...++.. .+...++..++ +++++||.|++..
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l-~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIV-LAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHH-HHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 468999999999998877753 589999876422 11222233345543 34445554443 6678999998753
Q ss_pred ccccccccH--------HHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEE
Q 044932 381 CSITWHAHG--------GKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 381 cli~W~~d~--------~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v 433 (689)
-.+|.... ..+|.++.|+|||||.|++.+....... ..++.+...-+|+.+
T Consensus 96 -pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~-~~~~~~~~~~~f~~~ 154 (194)
T TIGR00091 96 -PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFE-DMLKVLSENDLFENT 154 (194)
T ss_pred -CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHH-HHHHHHHhCCCeEec
Confidence 23554321 4689999999999999999876643222 113334444446654
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.6e-09 Score=106.99 Aligned_cols=125 Identities=18% Similarity=0.218 Sum_probs=83.8
Q ss_pred CCeEEEECCccchhHHHhhcCC--eEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecccccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAKE--VLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWH 386 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~~--V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~ 386 (689)
..++||+|||.|..+.+|+.++ |+++|+++.-. +...+.|.+++++......|.....++ +.||+|+++.++.+..
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al-~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~ 108 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVAL-EKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQ 108 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHH-HHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHH-HHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccCC
Confidence 3589999999999999999775 99999998533 345667777888876666665555665 7899998764443322
Q ss_pred -ccHHHHHHHHHhccCCCcEEEEEcC-----------CCchhHHHHHHHHHHhcceeEEEeec
Q 044932 387 -AHGGKLLLEMNRILRPSGYFILSTK-----------HDSIEEEEALTTLTASICWNILAHKT 437 (689)
Q Consensus 387 -~d~~~aL~EI~RVLRPGG~fVIsdp-----------~~~le~~~~ie~La~~l~W~~v~~~~ 437 (689)
+....++..|...|+|||++++... ..++....++..... +|+++....
T Consensus 109 ~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y~E 169 (192)
T PF03848_consen 109 RELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKYNE 169 (192)
T ss_dssp GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEEEE
T ss_pred HHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEEEc
Confidence 3346789999999999999988431 122223234555555 698876533
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.4e-09 Score=110.23 Aligned_cols=114 Identities=17% Similarity=0.247 Sum_probs=78.8
Q ss_pred CCeEEEECCccchhHHH-hhc--CCeEEEEcCCcccHHHHHHHHHHcCCCcEEec-----CCCCCCCCC--CCCcceEEe
Q 044932 309 IRVVLEIGSADLSFVAS-LLA--KEVLTLTVGLKDDLVDLAQVALERGFPAVVSP-----LGNRRLPFP--SGVFDAIHC 378 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~-La~--~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~-----~dt~~LPFp--D~SFDlVhc 378 (689)
-+.++|+|||+| .++. +++ ..|+|+|++ ++|+++|.+. .+..+.. .+..-.++- ++|.|||+|
T Consensus 34 h~~a~DvG~G~G-qa~~~iae~~k~VIatD~s-----~~mL~~a~k~-~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~ 106 (261)
T KOG3010|consen 34 HRLAWDVGTGNG-QAARGIAEHYKEVIATDVS-----EAMLKVAKKH-PPVTYCHTPSTMSSDEMVDLLGGEESVDLITA 106 (261)
T ss_pred cceEEEeccCCC-cchHHHHHhhhhheeecCC-----HHHHHHhhcC-CCcccccCCccccccccccccCCCcceeeehh
Confidence 458999999999 5544 444 369999986 4799988764 2333321 112223443 899999999
Q ss_pred ccccccccccHHHHHHHHHhccCCCc-EEEEEcCCCchhHHHHHHHHHHhccee
Q 044932 379 DGCSITWHAHGGKLLLEMNRILRPSG-YFILSTKHDSIEEEEALTTLTASICWN 431 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI~RVLRPGG-~fVIsdp~~~le~~~~ie~La~~l~W~ 431 (689)
+.|+ ||. |...+++++.||||+.| .+++-...+..-.+.+...+..+++|+
T Consensus 107 Aqa~-HWF-dle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 107 AQAV-HWF-DLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hhhH-Hhh-chHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 9885 777 67789999999999877 666665443333344566777777776
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.1e-08 Score=102.32 Aligned_cols=122 Identities=19% Similarity=0.130 Sum_probs=75.0
Q ss_pred CCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc-CCCcEEecCCCCC----CCCCCCCcceEEec
Q 044932 309 IRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER-GFPAVVSPLGNRR----LPFPSGVFDAIHCD 379 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR-GL~~i~~~~dt~~----LPFpD~SFDlVhcs 379 (689)
..+|||+|||+|.++..|+.. .|+++|+++.+.. .+.+.|.++ ++..+ ..+... .+++ .+||+|++.
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~-~l~~~a~~~~nv~~i--~~D~~~~~~~~~l~-~~~D~i~~d 148 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMR-ELLEVAEERKNIIPI--LADARKPERYAHVV-EKVDVIYQD 148 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHH-HHHHHhhhcCCcEEE--ECCCCCcchhhhcc-ccCCEEEEC
Confidence 468999999999998888764 4999999874331 233344443 22222 223322 2334 569999864
Q ss_pred cccccccccHHHHHHHHHhccCCCcEEEEEcC------CCc-hhHHHHHHHHHHhcceeEEEeec
Q 044932 380 GCSITWHAHGGKLLLEMNRILRPSGYFILSTK------HDS-IEEEEALTTLTASICWNILAHKT 437 (689)
Q Consensus 380 ~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp------~~~-le~~~~ie~La~~l~W~~v~~~~ 437 (689)
.. .+| ....+|.++.|+|||||+|+|..+ ... ..........++..+++.+...+
T Consensus 149 ~~-~p~--~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~ 210 (226)
T PRK04266 149 VA-QPN--QAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVD 210 (226)
T ss_pred CC-Chh--HHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEc
Confidence 22 121 223568999999999999999522 100 11112344777888998876544
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.5e-08 Score=100.02 Aligned_cols=118 Identities=20% Similarity=0.309 Sum_probs=77.5
Q ss_pred CCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHH----HcCCC-cEEecCCCCCCCCCCCCcceEEec
Q 044932 309 IRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVAL----ERGFP-AVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~----eRGL~-~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
..+|||+|||+|.++..++.. .++++|+++. +++.|. ..++. ..+...+... ++++++||+|+|.
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~-----~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~n 161 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPE-----ALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSN 161 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHH-----HHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEEC
Confidence 458999999999998888753 5889998864 344333 34554 2333444433 5677899999984
Q ss_pred ccccc------ccc-------------------cHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEE
Q 044932 380 GCSIT------WHA-------------------HGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 380 ~cli~------W~~-------------------d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~ 434 (689)
.-.+. +.. ....++.++.++|+|||.+++...... ...+.+++...+|..+.
T Consensus 162 pPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~---~~~~~~~l~~~gf~~v~ 238 (251)
T TIGR03534 162 PPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQ---GEAVRALFEAAGFADVE 238 (251)
T ss_pred CCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccH---HHHHHHHHHhCCCCceE
Confidence 21110 000 013568899999999999999765422 23477788888886654
Q ss_pred e
Q 044932 435 H 435 (689)
Q Consensus 435 ~ 435 (689)
.
T Consensus 239 ~ 239 (251)
T TIGR03534 239 T 239 (251)
T ss_pred E
Confidence 3
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.1e-08 Score=106.53 Aligned_cols=123 Identities=19% Similarity=0.262 Sum_probs=78.2
Q ss_pred CCCeEEEECCccchhHHHhh--cC-CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCC-CCcceEEeccccc
Q 044932 308 NIRVVLEIGSADLSFVASLL--AK-EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPS-GVFDAIHCDGCSI 383 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La--~~-~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD-~SFDlVhcs~cli 383 (689)
++++|||+|||+|-++.+.+ +. .|+|+|++|.-+ .+...-|...++...........+.++. +.||+|+|.- +
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV-~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI--L 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAV-EAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI--L 238 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHH-HHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh--h
Confidence 46899999999998765544 44 499999998422 2333444445666322111112233444 5999999852 1
Q ss_pred cccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeec
Q 044932 384 TWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKT 437 (689)
Q Consensus 384 ~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~ 437 (689)
- .-...+..++.+.|||||++++|+--.. ..+.+.+.+.+-+|.+.....
T Consensus 239 A--~vl~~La~~~~~~lkpgg~lIlSGIl~~--q~~~V~~a~~~~gf~v~~~~~ 288 (300)
T COG2264 239 A--EVLVELAPDIKRLLKPGGRLILSGILED--QAESVAEAYEQAGFEVVEVLE 288 (300)
T ss_pred H--HHHHHHHHHHHHHcCCCceEEEEeehHh--HHHHHHHHHHhCCCeEeEEEe
Confidence 1 1123677899999999999999984321 223466666677898876543
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.9e-08 Score=106.77 Aligned_cols=130 Identities=17% Similarity=0.250 Sum_probs=82.6
Q ss_pred CCeEEEECCccchhH--HHhhcC-CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccccc
Q 044932 309 IRVVLEIGSADLSFV--ASLLAK-EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITW 385 (689)
Q Consensus 309 ~R~VLDVGCGtGsfa--a~La~~-~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W 385 (689)
..+|||+|||+|-++ +++++. .|+++|++|.- -..+.+-+...|+...+.+.. ...++...||+|++.-. .
T Consensus 162 g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~A-v~~a~~N~~~N~~~~~~~v~~--~~~~~~~~~dlvvANI~--~- 235 (295)
T PF06325_consen 162 GKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLA-VEAARENAELNGVEDRIEVSL--SEDLVEGKFDLVVANIL--A- 235 (295)
T ss_dssp TSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHH-HHHHHHHHHHTT-TTCEEESC--TSCTCCS-EEEEEEES---H-
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHH-HHHHHHHHHHcCCCeeEEEEE--ecccccccCCEEEECCC--H-
Confidence 579999999999765 444444 59999999952 234445555567766554332 22344689999997521 1
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccccCceeEEEEEe
Q 044932 386 HAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEISEMGVKIYQK 450 (689)
Q Consensus 386 ~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqK 450 (689)
.-...++..+.++|+|||+|++|+-... ..+.+.+.++. +|.......+ ++-..+++||
T Consensus 236 -~vL~~l~~~~~~~l~~~G~lIlSGIl~~--~~~~v~~a~~~-g~~~~~~~~~--~~W~~l~~~K 294 (295)
T PF06325_consen 236 -DVLLELAPDIASLLKPGGYLILSGILEE--QEDEVIEAYKQ-GFELVEEREE--GEWVALVFKK 294 (295)
T ss_dssp -HHHHHHHHHCHHHEEEEEEEEEEEEEGG--GHHHHHHHHHT-TEEEEEEEEE--TTEEEEEEEE
T ss_pred -HHHHHHHHHHHHhhCCCCEEEEccccHH--HHHHHHHHHHC-CCEEEEEEEE--CCEEEEEEEe
Confidence 1123567788999999999999986432 23346666676 9988765443 4445566666
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-08 Score=91.11 Aligned_cols=93 Identities=18% Similarity=0.153 Sum_probs=63.8
Q ss_pred CCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHH----HcCCC-cEEecCCCCC-CCCCCCCcceEEe
Q 044932 309 IRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVAL----ERGFP-AVVSPLGNRR-LPFPSGVFDAIHC 378 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~----eRGL~-~i~~~~dt~~-LPFpD~SFDlVhc 378 (689)
..+|||+|||+|.++..++.. .|+++|+++. +++.|. ..++. ..+...+... +++...+||+|++
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~ 94 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPE-----ALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFI 94 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHH-----HHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEE
Confidence 468999999999998887753 4889998764 444433 23443 2233333322 4444469999998
Q ss_pred ccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 379 DGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
..+.. ....++.++.|+|+|||+|++..
T Consensus 95 ~~~~~----~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 95 GGSGG----LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCcch----hHHHHHHHHHHHcCCCCEEEEEe
Confidence 65322 23489999999999999999864
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-08 Score=103.69 Aligned_cols=96 Identities=16% Similarity=0.026 Sum_probs=65.9
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHH-HHHcCCC----------------cEEecCCCCCCCCC
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQV-ALERGFP----------------AVVSPLGNRRLPFP 369 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~-A~eRGL~----------------~i~~~~dt~~LPFp 369 (689)
..+|||+|||.|..+.+|+++ .|+|+|+|+. +++. +.+.++. ..+.+.|...++..
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~-----Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGHRVLGVELSEI-----AVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHH-----HHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 468999999999999999976 5999999874 3333 3333432 23344555444432
Q ss_pred -CCCcceEEeccccccccc-cHHHHHHHHHhccCCCcEEEEE
Q 044932 370 -SGVFDAIHCDGCSITWHA-HGGKLLLEMNRILRPSGYFILS 409 (689)
Q Consensus 370 -D~SFDlVhcs~cli~W~~-d~~~aL~EI~RVLRPGG~fVIs 409 (689)
...||+|+...++++... ....++..|.++|||||++++.
T Consensus 110 ~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 110 DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 357999987655554332 3467899999999999975554
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.7e-08 Score=99.56 Aligned_cols=97 Identities=18% Similarity=0.242 Sum_probs=70.2
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc----CCCcEEecCCCCCCC-CCCCCcceEEeccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER----GFPAVVSPLGNRRLP-FPSGVFDAIHCDGC 381 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR----GL~~i~~~~dt~~LP-FpD~SFDlVhcs~c 381 (689)
..+|||||||+|.++..+... .|+++|+++. ++..|.++ ++...+...+...++ ..++.||+|+|+..
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~ 123 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARLGADVTGIDASEE-----NIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEM 123 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHH-----HHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhH
Confidence 568999999999998877754 4888888763 44444432 443344444444443 45689999998754
Q ss_pred cccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 382 SITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 382 li~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
+ ++..++..+|..+.++|+|||++++..+
T Consensus 124 l-~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 124 L-EHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred h-hccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 4 3456788999999999999999999864
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.9e-08 Score=98.41 Aligned_cols=93 Identities=20% Similarity=0.276 Sum_probs=64.1
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc----CC--CcEEecCCCCCCCCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER----GF--PAVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR----GL--~~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
+..+|||+|||+|.++..|+.. .|+++|+++ .|++.|.++ ++ ...+...+ +++.+++||+|+|.
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~-----~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~ 134 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGAKVVASDISP-----QMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCL 134 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCH-----HHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEc
Confidence 3568999999999999888754 488999876 456666553 33 12233333 56667899999998
Q ss_pred ccccccc-ccHHHHHHHHHhccCCCcEEEE
Q 044932 380 GCSITWH-AHGGKLLLEMNRILRPSGYFIL 408 (689)
Q Consensus 380 ~cli~W~-~d~~~aL~EI~RVLRPGG~fVI 408 (689)
.+++||. .+...++.++.+++++++.+.+
T Consensus 135 ~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 135 DVLIHYPQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred chhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 7665544 2446788999998865555443
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.4e-09 Score=112.99 Aligned_cols=103 Identities=17% Similarity=0.249 Sum_probs=74.9
Q ss_pred CCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCcE-EecCCCCCC--CCCCCCcceEEeccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPAV-VSPLGNRRL--PFPSGVFDAIHCDGC 381 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~i-~~~~dt~~L--PFpD~SFDlVhcs~c 381 (689)
...+||||||+|.++..++.. .++|+|+++..+ ..+.+.+..+|+..+ +...|+..+ ++++++||.|++..
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i-~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF- 200 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSI-EQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF- 200 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHH-HHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC-
Confidence 458999999999999888853 699999987533 233444555676554 334455433 58899999999764
Q ss_pred cccccccH------HHHHHHHHhccCCCcEEEEEcCCC
Q 044932 382 SITWHAHG------GKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 382 li~W~~d~------~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
-.+|.... ..+|.++.|+|+|||.+.+.+-..
T Consensus 201 PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 201 PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence 35675432 478999999999999999987553
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.9e-08 Score=106.08 Aligned_cols=91 Identities=15% Similarity=0.149 Sum_probs=59.3
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcC----------CCcEEecCCCCCCCCCCCCcceE
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERG----------FPAVVSPLGNRRLPFPSGVFDAI 376 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRG----------L~~i~~~~dt~~LPFpD~SFDlV 376 (689)
..+|||+|||+|.++..|+.. .|+++|+++ .|++.|.++. ....+...+. +..+++||+|
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~-----~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl---~~l~~~fD~V 216 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEGAIVSASDISA-----AMVAEAERRAKEALAALPPEVLPKFEANDL---ESLSGKYDTV 216 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHhcccccccccceEEEEcch---hhcCCCcCEE
Confidence 468999999999999888865 489999876 4666666542 1122333333 2236899999
Q ss_pred EeccccccccccH-HHHHHHHHhccCCCcEEEE
Q 044932 377 HCDGCSITWHAHG-GKLLLEMNRILRPSGYFIL 408 (689)
Q Consensus 377 hcs~cli~W~~d~-~~aL~EI~RVLRPGG~fVI 408 (689)
+|..+++|+..+. ..++..+.+ |.+||.++.
T Consensus 217 v~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs 248 (315)
T PLN02585 217 TCLDVLIHYPQDKADGMIAHLAS-LAEKRLIIS 248 (315)
T ss_pred EEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEE
Confidence 9987776654332 335555655 456665443
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.5e-09 Score=105.23 Aligned_cols=116 Identities=15% Similarity=0.256 Sum_probs=85.1
Q ss_pred CCCeEEEECCccchhHHHhhcCC--eEEEEcCCcccHHHHHHHHHHcCCCcE--EecCCCCCCCCCCCCcceEEeccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAKE--VLTLTVGLKDDLVDLAQVALERGFPAV--VSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~~--V~gmDIsp~D~seamlq~A~eRGL~~i--~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
..+-|||||||+|.-+..|.+.+ .+|+|||| .|+..|.++-+.+. ...++ +-|||+.++||.|++.. .+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSp-----sML~~a~~~e~egdlil~DMG-~GlpfrpGtFDg~ISIS-Av 122 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISP-----SMLEQAVERELEGDLILCDMG-EGLPFRPGTFDGVISIS-AV 122 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCH-----HHHHHHHHhhhhcCeeeeecC-CCCCCCCCccceEEEee-ee
Confidence 46789999999998888887653 78999987 58888887755543 33444 78999999999998642 23
Q ss_pred cccc-------cH----HHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcce
Q 044932 384 TWHA-------HG----GKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICW 430 (689)
Q Consensus 384 ~W~~-------d~----~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W 430 (689)
.|.- +| ..++.-++.+|++|+..++.-.+..-...+.|...+...+|
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF 180 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGF 180 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhcc
Confidence 4431 22 34677799999999999999888765554556656666555
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.7e-08 Score=98.47 Aligned_cols=97 Identities=16% Similarity=0.178 Sum_probs=69.8
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH----cCC-CcEEecCCCCCCCCC-CCCcceEEecc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE----RGF-PAVVSPLGNRRLPFP-SGVFDAIHCDG 380 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e----RGL-~~i~~~~dt~~LPFp-D~SFDlVhcs~ 380 (689)
..+|||+|||+|.++..++.. .++++|+++. ++..+.+ .++ ...+...+...++.. .++||+|++..
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~-----~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~ 120 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEE-----NIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCME 120 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHH-----HHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehh
Confidence 568999999999988777643 4888888763 4444443 233 233444454455543 37999999875
Q ss_pred ccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 381 CSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 381 cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
. +++..++..+|.++.++|+|||+++++..
T Consensus 121 ~-l~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 121 V-LEHVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred H-HHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 4 45567888999999999999999998764
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.7e-09 Score=109.98 Aligned_cols=95 Identities=20% Similarity=0.282 Sum_probs=69.9
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcC--CCc-------E--EecCCCCCCCCCCCCcce
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERG--FPA-------V--VSPLGNRRLPFPSGVFDA 375 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRG--L~~-------i--~~~~dt~~LPFpD~SFDl 375 (689)
+++|||+|||+|.++..|+.. .|+|+|++. .|+..|.+.. .|. . +.+.+.+. +. +.||+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~-----~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~--~~-~~fDa 161 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASD-----DMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG--LT-GKFDA 161 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccH-----HHHHHHHHhhhcCchhccccceeeehhhcchhh--cc-cccce
Confidence 478999999999999888864 588888764 5777776641 111 1 11112222 22 45999
Q ss_pred EEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 376 IHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 376 Vhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
|+|+.++.| ..++..++.-+.+.|||||.++|++-.
T Consensus 162 VvcsevleH-V~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 162 VVCSEVLEH-VKDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred eeeHHHHHH-HhCHHHHHHHHHHHhCCCCceEeeehh
Confidence 999987765 789999999999999999999999754
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=7e-08 Score=92.32 Aligned_cols=119 Identities=17% Similarity=0.167 Sum_probs=76.8
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHH----HcCCC---cEEecCCCCCCCCCCCCcceEEec
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVAL----ERGFP---AVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~----eRGL~---~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
..+|||+|||+|.++..++.. .|+++|+++. ++..++ ..++. ..+...+... ++++.+||+|++.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~-----~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n 97 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPY-----AVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFN 97 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhcceEEEEECCHH-----HHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEEC
Confidence 468999999999998877754 6889998864 344432 22333 2233333322 4566799999875
Q ss_pred ccccccc--------------------ccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEe
Q 044932 380 GCSITWH--------------------AHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 380 ~cli~W~--------------------~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~ 435 (689)
.-..+.. .....++.++.++|+|||.+++..+... ....+..++...+|+....
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~--~~~~l~~~~~~~g~~~~~~ 171 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT--GEDEVLEYLEKLGFEAEVV 171 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC--CHHHHHHHHHHCCCeeeee
Confidence 3221100 0124578999999999999988765321 1234777888889977554
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.8e-08 Score=106.95 Aligned_cols=142 Identities=11% Similarity=0.099 Sum_probs=88.5
Q ss_pred CCCeEEEECCccchhHHHhh-----c-CCeEEEEcCCcccHHHHHHHHHH-cCCC--cEEecCCCCCCCCCCCCcceEEe
Q 044932 308 NIRVVLEIGSADLSFVASLL-----A-KEVLTLTVGLKDDLVDLAQVALE-RGFP--AVVSPLGNRRLPFPSGVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La-----~-~~V~gmDIsp~D~seamlq~A~e-RGL~--~i~~~~dt~~LPFpD~SFDlVhc 378 (689)
..++|||||||.|.+++.++ . ..++++|+++.... .+.+.+.. .++. ..+...+...++-..+.||+|+|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~-~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSAND-VARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHH-HHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 46899999999886543322 1 24889999874222 11222211 3443 33455555444323478999999
Q ss_pred cccccccc-ccHHHHHHHHHhccCCCcEEEEEcCCCchhH-HHHHH-HHHHhcceeEEEeeccccC-ceeEEEEEeCCC
Q 044932 379 DGCSITWH-AHGGKLLLEMNRILRPSGYFILSTKHDSIEE-EEALT-TLTASICWNILAHKTDEIS-EMGVKIYQKPES 453 (689)
Q Consensus 379 s~cli~W~-~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~-~~~ie-~La~~l~W~~v~~~~~~~g-~~~i~IwqKp~~ 453 (689)
. +++.|. .++..+|..+.|+|+|||+|++...+..+.- +..+. ...+ +|+....-.-+.. .+.+.+.||+..
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~--gf~~~~~~~P~~~v~Nsvi~~r~~~~ 277 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLR--GFEVLSVFHPTDEVINSVIIARKPGG 277 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCC--CeEEEEEECCCCCceeeEEEEEeecC
Confidence 8 788875 6889999999999999999999986543320 00010 1122 8988765332222 245888998753
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-08 Score=106.99 Aligned_cols=127 Identities=16% Similarity=0.133 Sum_probs=85.1
Q ss_pred eeecCCCCcccchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHH---
Q 044932 275 YLTFPQNQSEFKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQV--- 348 (689)
Q Consensus 275 ~~~Fpgggt~F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~--- 348 (689)
.-.|+............-++.+.+.+. ++ ++.+|||||||.|+++.+++.. .|+|+++|+ +|...
T Consensus 43 cayf~~~~~tL~eAQ~~k~~~~~~kl~-L~---~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~-----~Q~~~~~~ 113 (283)
T COG2230 43 CAYFEDPDMTLEEAQRAKLDLILEKLG-LK---PGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSE-----EQLAYAEK 113 (283)
T ss_pred eEEeCCCCCChHHHHHHHHHHHHHhcC-CC---CCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCH-----HHHHHHHH
Confidence 346777765445554455666666554 44 4689999999999999888854 578888876 34444
Q ss_pred -HHHcCCCcEEecCCCCCCCCCCCCcceEEecccccccc-ccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 349 -ALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWH-AHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 349 -A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~-~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
+.++|+...+.+. .+..+.....||-|++....-|.. .+...+|.-++++|+|||.+++-+-
T Consensus 114 r~~~~gl~~~v~v~-l~d~rd~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I 177 (283)
T COG2230 114 RIAARGLEDNVEVR-LQDYRDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSI 177 (283)
T ss_pred HHHHcCCCcccEEE-eccccccccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEe
Confidence 4455776222111 123333345699999876554432 3567899999999999999998764
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-08 Score=104.25 Aligned_cols=118 Identities=14% Similarity=0.166 Sum_probs=94.3
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
..++|.|+|||+|..+..|+.+ .|+|+|-| .+|+..|++|.....+...|.... -|...+|+++++ ..+
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS-----~~Mla~Aa~rlp~~~f~~aDl~~w-~p~~~~dllfaN-Avl 102 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSS-----PAMLAKAAQRLPDATFEEADLRTW-KPEQPTDLLFAN-AVL 102 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCC-----HHHHHHHHHhCCCCceecccHhhc-CCCCccchhhhh-hhh
Confidence 5789999999999988888764 57888765 479999999988777765555443 356899999875 567
Q ss_pred cccccHHHHHHHHHhccCCCcEEEEEcCCCchh-HHHHHHHHHHhcceeE
Q 044932 384 TWHAHGGKLLLEMNRILRPSGYFILSTKHDSIE-EEEALTTLTASICWNI 432 (689)
Q Consensus 384 ~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le-~~~~ie~La~~l~W~~ 432 (689)
+|.++...+|.-+.-.|.|||.+.+..|....+ ....|.+.++..-|..
T Consensus 103 qWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~ 152 (257)
T COG4106 103 QWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQ 152 (257)
T ss_pred hhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhh
Confidence 899999999999999999999999999865433 2356888888887754
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-08 Score=98.09 Aligned_cols=110 Identities=20% Similarity=0.142 Sum_probs=78.4
Q ss_pred EEEcCCcccHHHHHHHHHHcC-------C-CcEEecCCCCCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCc
Q 044932 333 TLTVGLKDDLVDLAQVALERG-------F-PAVVSPLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSG 404 (689)
Q Consensus 333 gmDIsp~D~seamlq~A~eRG-------L-~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG 404 (689)
|+|+| +.|++.|.+|. . ...+...+...|||++++||+|++..++ +|..++..+|.|++|+|||||
T Consensus 2 GvD~S-----~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l-~~~~d~~~~l~ei~rvLkpGG 75 (160)
T PLN02232 2 GLDFS-----SEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGL-RNVVDRLRAMKEMYRVLKPGS 75 (160)
T ss_pred eEcCC-----HHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchh-hcCCCHHHHHHHHHHHcCcCe
Confidence 56765 46888886541 1 2345566788999999999999987654 556789999999999999999
Q ss_pred EEEEEcCCC--------------------------------ch-------hHHHHHHHHHHhcceeEEEeeccccCceeE
Q 044932 405 YFILSTKHD--------------------------------SI-------EEEEALTTLTASICWNILAHKTDEISEMGV 445 (689)
Q Consensus 405 ~fVIsdp~~--------------------------------~l-------e~~~~ie~La~~l~W~~v~~~~~~~g~~~i 445 (689)
+|++.+... ++ ...+++..+++..+|+.+......++.+++
T Consensus 76 ~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~~~ 155 (160)
T PLN02232 76 RVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFMGN 155 (160)
T ss_pred EEEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHhHe
Confidence 999875210 00 012467778888889877766666666555
Q ss_pred EEE
Q 044932 446 KIY 448 (689)
Q Consensus 446 ~Iw 448 (689)
.+.
T Consensus 156 ~~~ 158 (160)
T PLN02232 156 LVA 158 (160)
T ss_pred eEe
Confidence 543
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.6e-08 Score=99.22 Aligned_cols=91 Identities=21% Similarity=0.197 Sum_probs=62.5
Q ss_pred CCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHH----HcCCC--cEEecCCCCCCCCCCCCcceEE
Q 044932 309 IRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVAL----ERGFP--AVVSPLGNRRLPFPSGVFDAIH 377 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~----eRGL~--~i~~~~dt~~LPFpD~SFDlVh 377 (689)
..+|||+|||+|.+++.|+. ..|+++|+++. +++.|. ..++. ..+...+....+...++||+|+
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~-----~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii 147 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKE-----LAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAII 147 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHH-----HHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEE
Confidence 46899999999998876653 25899998864 444443 33543 2344445544434557999999
Q ss_pred eccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
+.... + .+..++.|+|+|||+|++...
T Consensus 148 ~~~~~-~------~~~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 148 VTAAA-S------TIPSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred EccCc-c------hhhHHHHHhcCcCcEEEEEEc
Confidence 87543 2 344689999999999988654
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.6e-08 Score=107.64 Aligned_cols=121 Identities=17% Similarity=0.173 Sum_probs=81.7
Q ss_pred CCCeEEEECCccchhHHHh--hcCCeEEEEcCCcccHHHHHHHHHHcCCCc-EEecCCCCCCCCCCCCcceEEecc----
Q 044932 308 NIRVVLEIGSADLSFVASL--LAKEVLTLTVGLKDDLVDLAQVALERGFPA-VVSPLGNRRLPFPSGVFDAIHCDG---- 380 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~L--a~~~V~gmDIsp~D~seamlq~A~eRGL~~-i~~~~dt~~LPFpD~SFDlVhcs~---- 380 (689)
+..+|||.|||+|.++..+ ....|+|+|+++.+... +...+...|+.. .+...|...+|+++++||+|++..
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~-a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~ 260 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAG-ARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGR 260 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHH-HHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcC
Confidence 3568999999999986543 34569999998753321 111222335543 345667788999889999999841
Q ss_pred -cccccc---ccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEe
Q 044932 381 -CSITWH---AHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 381 -cli~W~---~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~ 435 (689)
....-+ .....+|.++.|+|+|||++++..+... .+..+++..+| ++..
T Consensus 261 ~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~-----~~~~~~~~~g~-i~~~ 313 (329)
T TIGR01177 261 STTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI-----DLESLAEDAFR-VVKR 313 (329)
T ss_pred cccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC-----CHHHHHhhcCc-chhe
Confidence 111100 1135799999999999999999887642 25567888899 6543
|
This family is found exclusively in the Archaea. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.1e-08 Score=104.94 Aligned_cols=122 Identities=19% Similarity=0.187 Sum_probs=78.6
Q ss_pred CCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHc-CCCcEEecCCCCC---CCCCCCCcceEEe
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALER-GFPAVVSPLGNRR---LPFPSGVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eR-GL~~i~~~~dt~~---LPFpD~SFDlVhc 378 (689)
...+|||+|||+|.++..+++. .|+++|+++.. ...++..|..+ ++..++. |+.. ++++..+||+|++
T Consensus 132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~-~~dLl~~ak~r~NI~~I~~--Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRS-GRDLTNMAKKRPNIVPIIE--DARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHH-HHHHHHHhhhcCCCEEEEC--CccChhhhhcccCCCCEEEE
Confidence 3468999999999998888753 39999998742 23577777665 4433333 3321 2223468999998
Q ss_pred ccccccccccHHHHHHHHHhccCCCcEEEEEcCCCch------hH--HHHHHHHHHhcceeEEEee
Q 044932 379 DGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSI------EE--EEALTTLTASICWNILAHK 436 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~l------e~--~~~ie~La~~l~W~~v~~~ 436 (689)
... .+ .+...++.++.|+|||||+|+|....... +. .+++ +.++..+|+.+.+.
T Consensus 209 Dva-~p--dq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev-~~L~~~GF~~~e~v 270 (293)
T PTZ00146 209 DVA-QP--DQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEV-QKLKKEGLKPKEQL 270 (293)
T ss_pred eCC-Cc--chHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHH-HHHHHcCCceEEEE
Confidence 643 22 23446677999999999999996432111 00 0234 55677788876543
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=9e-08 Score=96.23 Aligned_cols=115 Identities=17% Similarity=0.173 Sum_probs=71.7
Q ss_pred CCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHH----cCCCcEEecCCCCCCCCCCCCcceEEeccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALE----RGFPAVVSPLGNRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~e----RGL~~i~~~~dt~~LPFpD~SFDlVhcs~c 381 (689)
..+|||+|||+|.++..++.. .|+++|+++. +++.|.+ .++...+...+... .+++++||+|+|..-
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~-----~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npP 110 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRR-----AVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPP 110 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHH-----HHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCC
Confidence 468999999999988777653 5899999874 4443333 35544444444322 356789999998531
Q ss_pred ccc--------------ccc------cHHHHHHHHHhccCCCcEEEEEcCCC-chhHHHHHHHHHHhcceeE
Q 044932 382 SIT--------------WHA------HGGKLLLEMNRILRPSGYFILSTKHD-SIEEEEALTTLTASICWNI 432 (689)
Q Consensus 382 li~--------------W~~------d~~~aL~EI~RVLRPGG~fVIsdp~~-~le~~~~ie~La~~l~W~~ 432 (689)
.++ |.. ....++.++.++|||||+|++..... ... .+..+++..+|..
T Consensus 111 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~---~~~~~l~~~g~~~ 179 (223)
T PRK14967 111 YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVE---RTLTRLSEAGLDA 179 (223)
T ss_pred CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHH---HHHHHHHHCCCCe
Confidence 111 100 02357788999999999999865432 221 2344455556643
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.4e-08 Score=99.38 Aligned_cols=95 Identities=15% Similarity=0.008 Sum_probs=65.3
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHH-HHHcCCCc----------------EEecCCCCCCCCC
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQV-ALERGFPA----------------VVSPLGNRRLPFP 369 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~-A~eRGL~~----------------i~~~~dt~~LPFp 369 (689)
..+|||+|||.|..+.+|+++ .|+|+|+++. +++. +.++++.. .+...|...++..
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~-----Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGHEVLGVELSEL-----AVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCCeEEEEccCHH-----HHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 358999999999999999976 5999999874 3333 34555532 2234454444322
Q ss_pred -CCCcceEEecccccccc-ccHHHHHHHHHhccCCCcEEEE
Q 044932 370 -SGVFDAIHCDGCSITWH-AHGGKLLLEMNRILRPSGYFIL 408 (689)
Q Consensus 370 -D~SFDlVhcs~cli~W~-~d~~~aL~EI~RVLRPGG~fVI 408 (689)
...||+|+...++++.. .....++..|.++|+|||++++
T Consensus 113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 25899999655444432 2346899999999999996444
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.74 E-value=4e-08 Score=103.02 Aligned_cols=96 Identities=11% Similarity=0.177 Sum_probs=67.9
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHH----HHcCCCcE--EecCCCCCCCCCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVA----LERGFPAV--VSPLGNRRLPFPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A----~eRGL~~i--~~~~dt~~LPFpD~SFDlVh 377 (689)
+.++|||||||+|.++..++.+ .++++|+ | .+++.| .+.|+... +...|....+++ .+|+|+
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~-----~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~--~~D~v~ 220 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-P-----GAIDLVNENAAEKGVADRMRGIAVDIYKESYP--EADAVL 220 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-H-----HHHHHHHHHHHhCCccceEEEEecCccCCCCC--CCCEEE
Confidence 4579999999999998887754 3778886 3 234443 34455432 334455455676 379998
Q ss_pred ecccccccccc-HHHHHHHHHhccCCCcEEEEEcC
Q 044932 378 CDGCSITWHAH-GGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 378 cs~cli~W~~d-~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
+++++++|..+ ...+|.+++|+|+|||+|+|.+.
T Consensus 221 ~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 221 FCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred eEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 87766666543 35799999999999999999864
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.8e-08 Score=98.09 Aligned_cols=91 Identities=19% Similarity=0.143 Sum_probs=62.9
Q ss_pred CCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHc----CCC-cEEecCCCCCCCCCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALER----GFP-AVVSPLGNRRLPFPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eR----GL~-~i~~~~dt~~LPFpD~SFDlVh 377 (689)
...+|||||||+|.+++.|+. ..|+++|+++. +++.|.++ |+. ..+...+....+++++.||+|+
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~-----~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~ 150 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPE-----LAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIY 150 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHH-----HHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEE
Confidence 357899999999998876653 25899998763 44444432 443 3344455555555678999999
Q ss_pred eccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
+... .+ .+...+.+.|||||.|++-.
T Consensus 151 ~~~~-~~------~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 151 VTAA-GP------DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred ECCC-cc------cchHHHHHhhCCCcEEEEEE
Confidence 8643 23 34457788999999998854
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.8e-08 Score=101.90 Aligned_cols=97 Identities=14% Similarity=0.152 Sum_probs=61.4
Q ss_pred CCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHc------CCCcEEecCCCCC-CCCCCCC---c
Q 044932 309 IRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALER------GFPAVVSPLGNRR-LPFPSGV---F 373 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eR------GL~~i~~~~dt~~-LPFpD~S---F 373 (689)
..+|||+|||+|.++..|+. ..|+++|+|+ .|++.|.++ ++.......|... ++++... .
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~-----~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~ 138 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISA-----DALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGR 138 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCH-----HHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCC
Confidence 46899999999998877764 3588999876 466655543 2322223344433 4454332 2
Q ss_pred ceEEecccccccc--ccHHHHHHHHHhccCCCcEEEEEc
Q 044932 374 DAIHCDGCSITWH--AHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 374 DlVhcs~cli~W~--~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
+++++....+.+. .+...+|.+++++|+|||+|+|..
T Consensus 139 ~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 139 RLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred eEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 3333332233322 234578999999999999999875
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.2e-07 Score=91.77 Aligned_cols=113 Identities=16% Similarity=0.154 Sum_probs=72.8
Q ss_pred CCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHH----HcCCC--cEEecCCCCC-CCCCCCCcce
Q 044932 308 NIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVAL----ERGFP--AVVSPLGNRR-LPFPSGVFDA 375 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~----eRGL~--~i~~~~dt~~-LPFpD~SFDl 375 (689)
...+|||+|||+|.++..++. ..|+++|+++. +++.|. ..++. ..+...+... ++..+..||+
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~-----~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~ 114 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEK-----AINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDR 114 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHH-----HHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCE
Confidence 346899999999998876532 35899999874 444433 33432 2232334333 3333468999
Q ss_pred EEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhccee
Q 044932 376 IHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWN 431 (689)
Q Consensus 376 Vhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~ 431 (689)
|++... ..+...+|.++.|+|+|||++++.... .+....+..+++.++|.
T Consensus 115 V~~~~~----~~~~~~~l~~~~~~LkpgG~lv~~~~~--~~~~~~~~~~l~~~g~~ 164 (198)
T PRK00377 115 IFIGGG----SEKLKEIISASWEIIKKGGRIVIDAIL--LETVNNALSALENIGFN 164 (198)
T ss_pred EEECCC----cccHHHHHHHHHHHcCCCcEEEEEeec--HHHHHHHHHHHHHcCCC
Confidence 987431 235568999999999999999985442 22233455666777774
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-07 Score=94.08 Aligned_cols=91 Identities=21% Similarity=0.158 Sum_probs=61.8
Q ss_pred CCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHH----cCCCc-EEecCCCCCCCCCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALE----RGFPA-VVSPLGNRRLPFPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~e----RGL~~-i~~~~dt~~LPFpD~SFDlVh 377 (689)
...+|||+|||+|.+++.|+.. .|+++|+++. +++.|++ .|+.. .+...+....+.....||+|+
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~-----~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii 151 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPE-----LAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIY 151 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHH-----HHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEE
Confidence 3568999999999998877643 2899998864 4444433 35532 233444443333446899999
Q ss_pred eccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
+.... + .+...+.+.|+|||+|++..
T Consensus 152 ~~~~~-~------~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 152 VTAAG-P------KIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred EcCCc-c------cccHHHHHhcCcCcEEEEEE
Confidence 76432 2 34567889999999999864
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-07 Score=92.82 Aligned_cols=92 Identities=14% Similarity=0.165 Sum_probs=60.8
Q ss_pred CCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCC--------CCCCCcce
Q 044932 309 IRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLP--------FPSGVFDA 375 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LP--------FpD~SFDl 375 (689)
..+|||+|||+|.++..++.. .|+++|+++.. ...++. +...+....+ +++++||+
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~i~--~~~~d~~~~~~~~~l~~~~~~~~~D~ 101 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIENVD--FIRGDFTDEEVLNKIRERVGDDKVDV 101 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCCce--EEEeeCCChhHHHHHHHHhCCCCccE
Confidence 568999999999987766532 38999998731 112332 2223333322 56789999
Q ss_pred EEecccc---cccccc-------HHHHHHHHHhccCCCcEEEEEcC
Q 044932 376 IHCDGCS---ITWHAH-------GGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 376 Vhcs~cl---i~W~~d-------~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
|+|..+. -.|..+ ...+|.++.++|+|||+|++...
T Consensus 102 V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 102 VMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred EEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 9985321 112211 25789999999999999999653
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.2e-07 Score=98.85 Aligned_cols=133 Identities=15% Similarity=0.114 Sum_probs=83.0
Q ss_pred CeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHH----cCCCcEEecCCCCCCCCC-CCCcceEEecc
Q 044932 310 RVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALE----RGFPAVVSPLGNRRLPFP-SGVFDAIHCDG 380 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~e----RGL~~i~~~~dt~~LPFp-D~SFDlVhcs~ 380 (689)
.+|||+|||+|.++..|+. ..|+++|+++. |++.|++ .++...+...|.....++ .++||+|+|.-
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~-----ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNP 327 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPP-----ALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNP 327 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHH-----HHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECC
Confidence 5899999999999877763 35899999864 5555543 344444444443222232 46899999853
Q ss_pred cccc------------------cc--ccH----HHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEee
Q 044932 381 CSIT------------------WH--AHG----GKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHK 436 (689)
Q Consensus 381 cli~------------------W~--~d~----~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~ 436 (689)
-.++ +. .++ ..++.++.+.|+|||++++...... .+.+.+++...+|..+...
T Consensus 328 PYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q---~e~V~~ll~~~Gf~~v~v~ 404 (423)
T PRK14966 328 PYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQ---GAAVRGVLAENGFSGVETL 404 (423)
T ss_pred CCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccH---HHHHHHHHHHCCCcEEEEE
Confidence 1111 00 011 2456667789999999988665432 2357888888899766554
Q ss_pred ccccCceeEEEEEe
Q 044932 437 TDEISEMGVKIYQK 450 (689)
Q Consensus 437 ~~~~g~~~i~IwqK 450 (689)
.+-.+...+.+.++
T Consensus 405 kDl~G~dR~v~~~~ 418 (423)
T PRK14966 405 PDLAGLDRVTLGKY 418 (423)
T ss_pred EcCCCCcEEEEEEE
Confidence 54445455555554
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-07 Score=78.61 Aligned_cols=94 Identities=21% Similarity=0.244 Sum_probs=63.0
Q ss_pred eEEEECCccchhHHHhhc---CCeEEEEcCCcccHHHHHHHHH---HcC-C-CcEEecCCCCCCC-CCCCCcceEEeccc
Q 044932 311 VVLEIGSADLSFVASLLA---KEVLTLTVGLKDDLVDLAQVAL---ERG-F-PAVVSPLGNRRLP-FPSGVFDAIHCDGC 381 (689)
Q Consensus 311 ~VLDVGCGtGsfaa~La~---~~V~gmDIsp~D~seamlq~A~---eRG-L-~~i~~~~dt~~LP-FpD~SFDlVhcs~c 381 (689)
+|||+|||+|.++..++. ..++++|+++. ++..+. ..+ . ...+...+....+ +....||+|++...
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPV-----ALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHH-----HHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccc
Confidence 489999999999887775 35888988763 333333 111 1 1222233333332 24578999998765
Q ss_pred cccccccHHHHHHHHHhccCCCcEEEEE
Q 044932 382 SITWHAHGGKLLLEMNRILRPSGYFILS 409 (689)
Q Consensus 382 li~W~~d~~~aL~EI~RVLRPGG~fVIs 409 (689)
..++......++..+.++|+|||++++.
T Consensus 76 ~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4322456678999999999999999986
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.9e-07 Score=93.12 Aligned_cols=118 Identities=22% Similarity=0.291 Sum_probs=74.2
Q ss_pred CCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHc---CC--CcEEecCCCCCCCCCCCCcceEEec
Q 044932 309 IRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALER---GF--PAVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eR---GL--~~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
..+|||+|||+|.++..++. ..|+++|+++. +++.|.++ +. ...+...+. ..++++++||+|+|.
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~-----~l~~a~~n~~~~~~~~i~~~~~d~-~~~~~~~~fD~Iv~n 182 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKERPDAEVTAVDISPE-----ALAVARRNAKHGLGARVEFLQGDW-FEPLPGGRFDLIVSN 182 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHH-----HHHHHHHHHHhCCCCcEEEEEccc-cCcCCCCceeEEEEC
Confidence 46899999999998887764 35899998763 45554443 21 222333333 123446899999984
Q ss_pred ccccc-------------cc------------ccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEE
Q 044932 380 GCSIT-------------WH------------AHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 380 ~cli~-------------W~------------~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~ 434 (689)
.-.+. +. .....++.++.++|+|||++++...... ...+..++...+|..+.
T Consensus 183 pPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~---~~~~~~~l~~~gf~~v~ 259 (275)
T PRK09328 183 PPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQ---GEAVRALLAAAGFADVE 259 (275)
T ss_pred CCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchH---HHHHHHHHHhCCCceeE
Confidence 21110 00 0124577888899999999999654322 23477788888886544
Q ss_pred e
Q 044932 435 H 435 (689)
Q Consensus 435 ~ 435 (689)
.
T Consensus 260 ~ 260 (275)
T PRK09328 260 T 260 (275)
T ss_pred E
Confidence 3
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.8e-07 Score=100.94 Aligned_cols=95 Identities=17% Similarity=0.113 Sum_probs=66.1
Q ss_pred CeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHH----HcCCCcEEecCCCCCCCCCCCCcceEEeccc
Q 044932 310 RVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVAL----ERGFPAVVSPLGNRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~----eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~c 381 (689)
.+|||+|||+|.++..++.. .|+++|+++. ++..|. ..++...+...+. +...++.||+|+|...
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~-----Al~~A~~nl~~n~l~~~~~~~D~--~~~~~~~fDlIvsNPP 270 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAA-----ALESSRATLAANGLEGEVFASNV--FSDIKGRFDMIISNPP 270 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHH-----HHHHHHHHHHHcCCCCEEEEccc--ccccCCCccEEEECCC
Confidence 47999999999999887753 5889998764 444443 3455554443333 2233589999998643
Q ss_pred ccccc-----ccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 382 SITWH-----AHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 382 li~W~-----~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+ |+. .....++.++.|+|+|||.|+|....
T Consensus 271 F-H~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 271 F-HDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred c-cCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 2 221 13468899999999999999987653
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.4e-07 Score=87.26 Aligned_cols=97 Identities=19% Similarity=0.220 Sum_probs=63.5
Q ss_pred CCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHH----HcCCC-cEEecCCCCCCCCCCCCcceEEec
Q 044932 309 IRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVAL----ERGFP-AVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~----eRGL~-~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
..+|||+|||+|.++..++.. .|+++|+++. +++.|. ..++. ..+...|. --++++..||+|+|.
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~-----a~~~a~~n~~~n~~~~v~~~~~d~-~~~~~~~~fD~Iv~N 105 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPD-----ALELAKRNAERNGLENVEVVQSDL-FEALPDGKFDLIVSN 105 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHH-----HHHHHHHHHHHTTCTTEEEEESST-TTTCCTTCEEEEEE-
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHH-----HHHHHHHHHHhcCccccccccccc-cccccccceeEEEEc
Confidence 468999999999988887753 3899998863 444443 34555 33333332 123447999999985
Q ss_pred cccccccc-----cHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 380 GCSITWHA-----HGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 380 ~cli~W~~-----d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
-=. +... -...++.+..+.|+|||.|++....
T Consensus 106 PP~-~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 106 PPF-HAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp --S-BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred cch-hcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 211 1111 1357889999999999999776544
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.4e-08 Score=86.12 Aligned_cols=97 Identities=24% Similarity=0.332 Sum_probs=64.0
Q ss_pred CeEEEECCccchhHHHhhc---CCeEEEEcCCcccHHHHHHHHHH----cCC--CcEEecCCCCCCC--CCCCCcceEEe
Q 044932 310 RVVLEIGSADLSFVASLLA---KEVLTLTVGLKDDLVDLAQVALE----RGF--PAVVSPLGNRRLP--FPSGVFDAIHC 378 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~---~~V~gmDIsp~D~seamlq~A~e----RGL--~~i~~~~dt~~LP--FpD~SFDlVhc 378 (689)
.+|||+|||+|.++.+++. ..++++|++|. .++.|+. .++ ...+...|...++ +++++||+|++
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~-----~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~ 76 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPE-----AVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVT 76 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHH-----HHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHH-----HHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEE
Confidence 4799999999998766653 56999999874 3444433 233 2344455544443 78899999998
Q ss_pred cccccccc-------ccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 379 DGCSITWH-------AHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 379 s~cli~W~-------~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
.--..... .....++.++.|+|||||.+++..+
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 63222111 0124779999999999999998754
|
... |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.55 E-value=1e-06 Score=92.15 Aligned_cols=131 Identities=15% Similarity=0.172 Sum_probs=80.3
Q ss_pred CeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHH----cCCC--cEEecCCCCCCCCCCCCcceEEec
Q 044932 310 RVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALE----RGFP--AVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~e----RGL~--~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
.+|||+|||+|.++..++. ..|+++|+++. +++.|.+ .++. ..+...+.. -++++..||+|++.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~-----al~~a~~n~~~~~~~~~v~~~~~d~~-~~~~~~~fDlIvsN 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPD-----ALAVAEENAEKNQLEHRVEFIQSNLF-EPLAGQKIDIIVSN 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHH-----HHHHHHHHHHHcCCCCcEEEEECchh-ccCcCCCccEEEEC
Confidence 5899999999998887774 35999998863 4444443 3543 233333332 24555689999984
Q ss_pred cc------------cccccc------------cHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHH-hcceeEEE
Q 044932 380 GC------------SITWHA------------HGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTA-SICWNILA 434 (689)
Q Consensus 380 ~c------------li~W~~------------d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~-~l~W~~v~ 434 (689)
-- ...|.+ ....++.++.++|+|||+|++....... ..+.+++. ..+|..+.
T Consensus 190 PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~---~~~~~~~~~~~~~~~~~ 266 (284)
T TIGR00536 190 PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQ---KSLKELLRIKFTWYDVE 266 (284)
T ss_pred CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHH---HHHHHHHHhcCCCceeE
Confidence 10 011111 1235788899999999999987765432 23666666 46786554
Q ss_pred eeccccCceeEEEEE
Q 044932 435 HKTDEISEMGVKIYQ 449 (689)
Q Consensus 435 ~~~~~~g~~~i~Iwq 449 (689)
...+-.+...+.+.+
T Consensus 267 ~~~D~~g~~R~~~~~ 281 (284)
T TIGR00536 267 NGRDLNGKERVVLGF 281 (284)
T ss_pred EecCCCCCceEEEEE
Confidence 434433434444443
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.3e-06 Score=84.31 Aligned_cols=95 Identities=14% Similarity=0.141 Sum_probs=61.4
Q ss_pred CCCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHH----HcCCCc-EEecCCCCC-CCCCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVAL----ERGFPA-VVSPLGNRR-LPFPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~----eRGL~~-i~~~~dt~~-LPFpD~SFDlVh 377 (689)
...+|||+|||+|.++..++. ..|+++|++|. +++.|. +.++.. .+...++.. ++.....+|.++
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~-----~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~ 114 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEE-----VVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVC 114 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHH-----HHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEE
Confidence 346899999999999877753 35999999874 344333 235432 233333321 222223467765
Q ss_pred eccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
... ..+...+|.++.|+|+|||+|++....
T Consensus 115 ~~~-----~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 115 IEG-----GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred EEC-----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 421 123468999999999999999998764
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.9e-07 Score=99.04 Aligned_cols=107 Identities=11% Similarity=0.069 Sum_probs=67.3
Q ss_pred HHHhhcccccCCCCCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc----CCC----cEEecCC
Q 044932 295 SIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER----GFP----AVVSPLG 362 (689)
Q Consensus 295 ~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR----GL~----~i~~~~d 362 (689)
+|.+.+|. . ...+|||+|||+|.++..++.. .|+++|+++ .+++.|.+. +.. ..+...+
T Consensus 219 llL~~lp~-~---~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~-----~Av~~A~~N~~~n~~~~~~~v~~~~~D 289 (378)
T PRK15001 219 FFMQHLPE-N---LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESP-----MAVASSRLNVETNMPEALDRCEFMINN 289 (378)
T ss_pred HHHHhCCc-c---cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCH-----HHHHHHHHHHHHcCcccCceEEEEEcc
Confidence 45555552 1 2358999999999999888753 589999876 355555432 221 1222222
Q ss_pred CCCCCCCCCCcceEEecccccc---cc-ccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 363 NRRLPFPSGVFDAIHCDGCSIT---WH-AHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 363 t~~LPFpD~SFDlVhcs~cli~---W~-~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
... .++..+||+|+|.-.+.. .. .....+|.++.|+|+|||.|++...
T Consensus 290 ~l~-~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 290 ALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred ccc-cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 211 234568999999632211 01 1124789999999999999999863
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.8e-07 Score=99.89 Aligned_cols=119 Identities=21% Similarity=0.239 Sum_probs=73.8
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCC--CCCCCcceEEe---
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLP--FPSGVFDAIHC--- 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LP--FpD~SFDlVhc--- 378 (689)
...+|||+|||+|..+..++.. .|+++|+++.... .+.+.+...|+...+...|+..++ ++.++||+|++
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~-~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLE-RVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHH-HHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 3568999999999988777642 5899998874221 122222333655455555665554 45678999984
Q ss_pred -cccc-------ccccccH----------HHHHHHHHhccCCCcEEEEEcCCCch-hHHHHHHHHHHh
Q 044932 379 -DGCS-------ITWHAHG----------GKLLLEMNRILRPSGYFILSTKHDSI-EEEEALTTLTAS 427 (689)
Q Consensus 379 -s~cl-------i~W~~d~----------~~aL~EI~RVLRPGG~fVIsdp~~~l-e~~~~ie~La~~ 427 (689)
+... +.|.... ..+|..+.++|||||++++++-.-.. +....+..++++
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~ 390 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLAR 390 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHh
Confidence 3211 1232222 26899999999999999998743322 222335555544
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=9.5e-07 Score=87.83 Aligned_cols=92 Identities=20% Similarity=0.112 Sum_probs=60.5
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc----CCCc-EEecCCCCCCCCCCCCcceEEecc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER----GFPA-VVSPLGNRRLPFPSGVFDAIHCDG 380 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR----GL~~-i~~~~dt~~LPFpD~SFDlVhcs~ 380 (689)
+..+|||+|||+|.++..|+.. .|+++|+++ .+++.|.++ ++.. .+...+......+.++||+|++..
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~-----~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~ 152 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIK-----TLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTA 152 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHhCEEEEEeCCH-----HHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEcc
Confidence 3578999999999988766543 588999875 344444432 4432 233333322111347899999864
Q ss_pred ccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 381 CSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 381 cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
. .+ .+..++.+.|+|||.+++...
T Consensus 153 ~-~~------~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 153 A-AP------EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred C-ch------hhhHHHHHhcCCCcEEEEEEc
Confidence 3 22 345678899999999998765
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.3e-07 Score=92.75 Aligned_cols=121 Identities=19% Similarity=0.263 Sum_probs=85.9
Q ss_pred cCCCCcccchhHHHHHHHHHhhcccccCC--CCCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcC
Q 044932 278 FPQNQSEFKGGVLHYLESIEEMVPDIEWG--KNIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERG 353 (689)
Q Consensus 278 Fpgggt~F~~ga~~Yid~L~~~Lp~l~~G--~~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRG 353 (689)
+-|.|.||--...+|.++|..- ...+. ....++||||+|.|..+..|+.. .|.+..+|+ .|.....+||
T Consensus 64 ~LgRG~MFvfS~~Q~~~LL~~~--~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~-----~Mr~rL~~kg 136 (265)
T PF05219_consen 64 ILGRGSMFVFSEEQFRKLLRIS--GFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASP-----PMRWRLSKKG 136 (265)
T ss_pred hhcCCcEEEecHHHHHHHhhhh--ccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCH-----HHHHHHHhCC
Confidence 4567778776667776665521 11121 14578999999999999998763 688888775 5777777888
Q ss_pred CCcEEecCCCCCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 354 FPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 354 L~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
.... +.....-.+..||+|.|.. ++.=+.+|..+|.+|++.|+|+|++++..
T Consensus 137 ~~vl----~~~~w~~~~~~fDvIscLN-vLDRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 137 FTVL----DIDDWQQTDFKFDVISCLN-VLDRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred CeEE----ehhhhhccCCceEEEeehh-hhhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 7533 1112222356899999864 44446788999999999999999999984
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.5e-06 Score=91.43 Aligned_cols=116 Identities=16% Similarity=0.219 Sum_probs=73.8
Q ss_pred CCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHH----cCCC--cEEecCCCCCCCCCCCCcceEEe
Q 044932 309 IRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALE----RGFP--AVVSPLGNRRLPFPSGVFDAIHC 378 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~e----RGL~--~i~~~~dt~~LPFpD~SFDlVhc 378 (689)
..+|||+|||+|.++..++.. .|+++|+++. +++.|++ .++. ..+...|.. -++++++||+|+|
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~-----al~~A~~n~~~~~~~~~i~~~~~D~~-~~~~~~~fD~Iv~ 195 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPD-----ALAVAEINIERHGLEDRVTLIQSDLF-AALPGRKYDLIVS 195 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHH-----HHHHHHHHHHHcCCCCcEEEEECchh-hccCCCCccEEEE
Confidence 468999999999998888753 5899999864 4444443 3553 223334432 1355678999998
Q ss_pred cc-----ccc-----ccccc--------------HHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEE
Q 044932 379 DG-----CSI-----TWHAH--------------GGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 379 s~-----cli-----~W~~d--------------~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~ 434 (689)
.- ..+ .+..+ ...++.++.++|+|||++++...... ..+..++...+|.-..
T Consensus 196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~----~~v~~~~~~~~~~~~~ 271 (284)
T TIGR03533 196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM----EALEEAYPDVPFTWLE 271 (284)
T ss_pred CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH----HHHHHHHHhCCCceee
Confidence 41 000 00001 13568899999999999998766422 3466777766654443
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.2e-06 Score=96.69 Aligned_cols=119 Identities=16% Similarity=0.173 Sum_probs=72.9
Q ss_pred CCCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHcCCCcEE--ecCCCCCCCC--CCCCcceEEe-
Q 044932 308 NIRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALERGFPAVV--SPLGNRRLPF--PSGVFDAIHC- 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eRGL~~i~--~~~dt~~LPF--pD~SFDlVhc- 378 (689)
...+|||+|||+|+.+..++. ..|+++|+++... ..+.+.+...|+...+ ...+...+++ ++++||.|++
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l-~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRL-KRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 347899999999998876654 3599999887422 1222223334665323 3344444444 5688999984
Q ss_pred ---cc-ccc------ccccc----------HHHHHHHHHhccCCCcEEEEEcCCCchh-HHHHHHHHHHh
Q 044932 379 ---DG-CSI------TWHAH----------GGKLLLEMNRILRPSGYFILSTKHDSIE-EEEALTTLTAS 427 (689)
Q Consensus 379 ---s~-cli------~W~~d----------~~~aL~EI~RVLRPGG~fVIsdp~~~le-~~~~ie~La~~ 427 (689)
+. ..+ .|... ...+|.++.|+|||||+|++++-.-..+ ....+..+++.
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~ 386 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQE 386 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHh
Confidence 32 111 12211 2468999999999999999997543332 22335555554
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.8e-06 Score=85.01 Aligned_cols=117 Identities=18% Similarity=0.130 Sum_probs=72.3
Q ss_pred CCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHH----cCCCcEEecCCCC-CCCC-CCCCcceEEe
Q 044932 309 IRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALE----RGFPAVVSPLGNR-RLPF-PSGVFDAIHC 378 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~e----RGL~~i~~~~dt~-~LPF-pD~SFDlVhc 378 (689)
..+|||+|||+|.++..++. ..|+++|+++. +++.|.+ .++ .+...|.. .++- ..+.||+|++
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~-----al~~A~~N~~~~~~--~~~~~D~~~~l~~~~~~~fDlVv~ 159 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPA-----AVRCARRNLADAGG--TVHEGDLYDALPTALRGRVDILAA 159 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHH-----HHHHHHHHHHHcCC--EEEEeechhhcchhcCCCEeEEEE
Confidence 35899999999999877763 25899998874 4444443 233 22223322 1221 1257999997
Q ss_pred cccccc------------cc---------ccH----HHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEE
Q 044932 379 DGCSIT------------WH---------AHG----GKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 379 s~cli~------------W~---------~d~----~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v 433 (689)
.-=.++ ++ .+. ..++..+.++|+|||+|++....... ..+..++...+|...
T Consensus 160 NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~---~~v~~~l~~~g~~~~ 236 (251)
T TIGR03704 160 NAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQA---PLAVEAFARAGLIAR 236 (251)
T ss_pred CCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchH---HHHHHHHHHCCCCce
Confidence 521110 00 011 25666777999999999998765433 347777877788664
Q ss_pred Ee
Q 044932 434 AH 435 (689)
Q Consensus 434 ~~ 435 (689)
..
T Consensus 237 ~~ 238 (251)
T TIGR03704 237 VA 238 (251)
T ss_pred ee
Confidence 43
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.4e-06 Score=93.43 Aligned_cols=123 Identities=20% Similarity=0.271 Sum_probs=75.6
Q ss_pred CCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHcCCCc-EEecCCCCCCC----CCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALERGFPA-VVSPLGNRRLP----FPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eRGL~~-i~~~~dt~~LP----FpD~SFDlVh 377 (689)
...+|||+|||+|..+..++.. .|+++|+++... ..+.+.+...|+.. .+...|+..++ +.+++||.|+
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl-~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRL-KKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHH-HHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 3468999999999988766542 489999876422 12222233346643 34455665555 5568999998
Q ss_pred e----cc-cccc------cccc----------HHHHHHHHHhccCCCcEEEEEcCCCchh-HHHHHHHHHHhc-cee
Q 044932 378 C----DG-CSIT------WHAH----------GGKLLLEMNRILRPSGYFILSTKHDSIE-EEEALTTLTASI-CWN 431 (689)
Q Consensus 378 c----s~-cli~------W~~d----------~~~aL~EI~RVLRPGG~fVIsdp~~~le-~~~~ie~La~~l-~W~ 431 (689)
+ ++ ..+. |... ...+|.++.++|||||+|+.++-.-..+ ....+..+++.. .|+
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~ 407 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWK 407 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcE
Confidence 5 32 1111 2111 2467999999999999999887443332 233455666554 454
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.5e-06 Score=93.66 Aligned_cols=117 Identities=18% Similarity=0.189 Sum_probs=73.7
Q ss_pred CCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHcCCCc-EEecCCCCCCCCCCCCcceEEe----
Q 044932 309 IRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALERGFPA-VVSPLGNRRLPFPSGVFDAIHC---- 378 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eRGL~~-i~~~~dt~~LPFpD~SFDlVhc---- 378 (689)
..+|||+|||+|..+..++. ..|+++|+++... ....+.+.+.|+.. .+...++..++ ++++||+|++
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l-~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pc 328 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKL-EKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAPC 328 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCC
Confidence 46899999999987766553 2599999987432 12223333446653 34455555554 5678999984
Q ss_pred cccc-------ccccccH----------HHHHHHHHhccCCCcEEEEEcCCCchhH-HHHHHHHHHh
Q 044932 379 DGCS-------ITWHAHG----------GKLLLEMNRILRPSGYFILSTKHDSIEE-EEALTTLTAS 427 (689)
Q Consensus 379 s~cl-------i~W~~d~----------~~aL~EI~RVLRPGG~fVIsdp~~~le~-~~~ie~La~~ 427 (689)
+... +.|...+ ..+|.++.++|||||++++++-.-..++ ...+..+++.
T Consensus 329 sg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~ 395 (445)
T PRK14904 329 TGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR 395 (445)
T ss_pred CCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence 3211 1233222 2589999999999999999985433332 3345566654
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.9e-06 Score=70.64 Aligned_cols=95 Identities=24% Similarity=0.326 Sum_probs=63.5
Q ss_pred EEEECCccch--hHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcC----CC-cEEecCCCC--CCCCCC-CCcceEEec
Q 044932 312 VLEIGSADLS--FVASLLAK--EVLTLTVGLKDDLVDLAQVALERG----FP-AVVSPLGNR--RLPFPS-GVFDAIHCD 379 (689)
Q Consensus 312 VLDVGCGtGs--faa~La~~--~V~gmDIsp~D~seamlq~A~eRG----L~-~i~~~~dt~--~LPFpD-~SFDlVhcs 379 (689)
+||+|||+|. +...+... .++++|+++. ++..+.... .. ..+...+.. .+||.+ ..||++ +.
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~ 125 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPE-----MLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-IS 125 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHH-----HHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-ee
Confidence 9999999998 44444443 5677777653 333333222 11 122333333 378887 499999 76
Q ss_pred cccccccccHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 380 GCSITWHAHGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 380 ~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
.+..++.. ....+.++.|+|+|+|.+++.....
T Consensus 126 ~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 126 LLVLHLLP-PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred eeehhcCC-HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 66655444 6789999999999999999987653
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=9.6e-06 Score=84.48 Aligned_cols=112 Identities=15% Similarity=0.189 Sum_probs=70.2
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHc-CCC-----cEEec
Q 044932 291 HYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALER-GFP-----AVVSP 360 (689)
Q Consensus 291 ~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eR-GL~-----~i~~~ 360 (689)
.|...+...+.. . ...++|||||||+|.++.+++. ..|+++|++| .+++.|.+. +.+ ..+..
T Consensus 52 ~y~~~m~~~l~~-~--~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp-----~vi~~A~~~f~~~~~~~rv~v~~ 123 (262)
T PRK04457 52 AYTRAMMGFLLF-N--PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINP-----QVIAVARNHFELPENGERFEVIE 123 (262)
T ss_pred HHHHHHHHHHhc-C--CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCH-----HHHHHHHHHcCCCCCCCceEEEE
Confidence 566655443321 1 1467899999999999887764 2589999886 467777664 221 22333
Q ss_pred CCCCC-CCCCCCCcceEEeccc---cccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 361 LGNRR-LPFPSGVFDAIHCDGC---SITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 361 ~dt~~-LPFpD~SFDlVhcs~c---li~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
.|+.. ++-...+||+|++... .++.+..-..++.++.++|+|||.|++..
T Consensus 124 ~Da~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 124 ADGAEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCHHHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 44321 2212368999987421 11111122589999999999999999853
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.5e-06 Score=84.44 Aligned_cols=121 Identities=19% Similarity=0.267 Sum_probs=79.4
Q ss_pred CeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCC--cEEecCCCCCCCCCCCCcceEEeccc--
Q 044932 310 RVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFP--AVVSPLGNRRLPFPSGVFDAIHCDGC-- 381 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~--~i~~~~dt~~LPFpD~SFDlVhcs~c-- 381 (689)
.+|||+|||.|.+...|+.. ..+|+|.++.-+ +-+..+|.+++++ ..+.++|...-.|-.+.||+|+--..
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV-~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAV-ELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHH-HHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 48999999999999889864 378899887522 2233455566777 44556665443566788998874211
Q ss_pred ccccc-----ccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEE
Q 044932 382 SITWH-----AHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 382 li~W~-----~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~ 434 (689)
.|..+ ..+..++--+.++|+|||+|+|..=.... ++|.+.....++....
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~---dELv~~f~~~~f~~~~ 202 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTK---DELVEEFENFNFEYLS 202 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccH---HHHHHHHhcCCeEEEE
Confidence 11111 12346788899999999999998765433 3355666666665543
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.8e-06 Score=88.27 Aligned_cols=99 Identities=17% Similarity=0.208 Sum_probs=65.5
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc------CC----CcEEecCCCCC-CCCCCCC
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER------GF----PAVVSPLGNRR-LPFPSGV 372 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR------GL----~~i~~~~dt~~-LPFpD~S 372 (689)
..++||+||||+|.++..++.+ .|+++++++ .+++.|++. +. ...+...|+.. +...+++
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~-----~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~ 150 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDE-----RVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENS 150 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCH-----HHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCc
Confidence 4689999999999999888764 378888876 455555542 11 12233344322 2334689
Q ss_pred cceEEecccccccccc----HHHHHHHHHhccCCCcEEEEEcCC
Q 044932 373 FDAIHCDGCSITWHAH----GGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 373 FDlVhcs~cli~W~~d----~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
||+|++... -++... ...++..+.|+|+|||.+++....
T Consensus 151 yDvIi~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 151 FDVIIVDST-DPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred ccEEEECCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 999997432 222211 246788999999999999987544
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.1e-06 Score=90.08 Aligned_cols=111 Identities=13% Similarity=0.137 Sum_probs=70.3
Q ss_pred CeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHH----cCCC--cEEecCCCCCCCCCCCCcceEEec
Q 044932 310 RVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALE----RGFP--AVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~e----RGL~--~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
.+|||+|||+|.++..++.. .|+++|+++. +++.|.+ .++. ..+...|... ++++++||+|+|.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~-----al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPD-----ALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHH-----HHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEEC
Confidence 58999999999998887743 5899999874 4444433 3543 2333344321 3456789999985
Q ss_pred ccc------------ccccc--------c----HHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcce
Q 044932 380 GCS------------ITWHA--------H----GGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICW 430 (689)
Q Consensus 380 ~cl------------i~W~~--------d----~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W 430 (689)
--. +.+.+ + ...++.++.++|+|||++++..... +..+..++...++
T Consensus 209 PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~----~~~~~~~~~~~~~ 279 (307)
T PRK11805 209 PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS----RVHLEEAYPDVPF 279 (307)
T ss_pred CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC----HHHHHHHHhhCCC
Confidence 100 01110 1 1367889999999999999975543 2236666665544
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.8e-06 Score=93.67 Aligned_cols=283 Identities=19% Similarity=0.197 Sum_probs=144.8
Q ss_pred CCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHH----cCCCc--EEecCCCCCCCCCCCCcceEEe
Q 044932 309 IRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALE----RGFPA--VVSPLGNRRLPFPSGVFDAIHC 378 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~e----RGL~~--i~~~~dt~~LPFpD~SFDlVhc 378 (689)
..+|||+|||+|.++..++. ..|+++|+++. +++.|.+ .++.. .+...+.. -+++.++||+|+|
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~-----al~~A~~N~~~~~l~~~v~~~~~D~~-~~~~~~~fDlIvs 212 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLD-----AIEVAKSNAIKYEVTDRIQIIHSNWF-ENIEKQKFDFIVS 212 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHH-----HHHHHHHHHHHcCCccceeeeecchh-hhCcCCCccEEEE
Confidence 45899999999998877763 35999999863 4444443 34432 22223321 1345678999998
Q ss_pred cccccc-------------cc--------ccH----HHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEE
Q 044932 379 DGCSIT-------------WH--------AHG----GKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 379 s~cli~-------------W~--------~d~----~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v 433 (689)
.--.+. +. .+. ..++.++.++|+|||.|++..... ..+.+..++...+|..+
T Consensus 213 NPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~---q~~~v~~~~~~~g~~~~ 289 (506)
T PRK01544 213 NPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK---QEEAVTQIFLDHGYNIE 289 (506)
T ss_pred CCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc---hHHHHHHHHHhcCCCce
Confidence 421110 00 011 235678889999999999865432 22357777777788654
Q ss_pred EeeccccCceeEEEEEe-CCCchhHhhhhCCCCCCCCCCCCCCCccccccccccccCCccccccCCCCCCCCccccccCC
Q 044932 434 AHKTDEISEMGVKIYQK-PESNDIYELRRKKNPPLCKENENPDAAWYVPMKTCLHTIPSSIEQHGTEWPEEWPKRLETYP 512 (689)
Q Consensus 434 ~~~~~~~g~~~i~IwqK-p~~~~cy~~r~~~~p~~C~~~~d~d~~Wy~~l~~Ci~~~p~~~~~~~~~~~~~wP~Rl~~~p 512 (689)
....+-.|...+++.-- .++. -|..|+.. ++.... .+ .+-.-||.-+-
T Consensus 290 ~~~~D~~g~~R~v~~~~~~~~r-s~~rr~g~------------------------~~~~~q-~~--~~e~~~p~~~i--- 338 (506)
T PRK01544 290 SVYKDLQGHSRVILISPINLNR-SYARRIGK------------------------SLSGVQ-QN--LLDNELPKYLF--- 338 (506)
T ss_pred EEEecCCCCceEEEeccccCCc-ceeccCCC------------------------CCCHHH-HH--HHHhhhhhhCC---
Confidence 33222112111111110 0000 00000000 000000 00 00112333221
Q ss_pred CccCchhhhhhhhHHHHHHHHHhhhcccCCCCCCeeEEeecCCcchhHHHHhccCCceEEEeccCCC-----CCchhhhh
Q 044932 513 DWLNDKEKLSSDTRHWKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-----PDTLPVIY 587 (689)
Q Consensus 513 ~rl~~~e~f~~D~~~W~~~v~~~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-----~~tL~vI~ 587 (689)
+.+ + + ++ ..-..++|+++|.|+|.++|....-- .|++=+.- -..+..+.
T Consensus 339 ----~~e--------------k-----l-f~-~~~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE~~~~~~~~~~~~~~ 392 (506)
T PRK01544 339 ----SKE--------------K-----L-VN-EKRKVFLEIGFGMGEHFINQAKMNPD-ALFIGVEVYLNGVANVLKLAG 392 (506)
T ss_pred ----CHH--------------H-----h-CC-CCCceEEEECCCchHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHH
Confidence 000 0 0 12 23578999999999999999754211 13332221 12344556
Q ss_pred ccccchhhccccCCC----CCCC-ccchhhccccccc-cc------cCCcCCccceeeeeccccccCcEEEEe-CchhhH
Q 044932 588 DRGLVGIYHDWCESF----GTYP-RSYDLLHADHLFS-RL------KSRCRQPVSIVVEMDRILRPGGWAIVR-DKVEIL 654 (689)
Q Consensus 588 ~RGLig~yhdwce~f----~typ-rTyDLlHa~~lfs-~~------~~~c~~~~~illEmDRILRP~G~~iir-D~~~~l 654 (689)
.+||-.+.. +|..+ ..|| .+.|-||-. |. .| +.|=- -...|-+|-|+|+|||.+.++ |..++.
T Consensus 393 ~~~l~N~~~-~~~~~~~~~~~~~~~sv~~i~i~--FPDPWpKkrh~krRl~-~~~fl~~~~~~Lk~gG~i~~~TD~~~y~ 468 (506)
T PRK01544 393 EQNITNFLL-FPNNLDLILNDLPNNSLDGIYIL--FPDPWIKNKQKKKRIF-NKERLKILQDKLKDNGNLVFASDIENYF 468 (506)
T ss_pred HcCCCeEEE-EcCCHHHHHHhcCcccccEEEEE--CCCCCCCCCCcccccc-CHHHHHHHHHhcCCCCEEEEEcCCHHHH
Confidence 666533321 23222 2233 556665532 22 23 33333 256788999999999999888 666666
Q ss_pred HHHHHHH
Q 044932 655 DPLEGIL 661 (689)
Q Consensus 655 ~~v~~i~ 661 (689)
..+...+
T Consensus 469 ~~~~~~~ 475 (506)
T PRK01544 469 YEAIELI 475 (506)
T ss_pred HHHHHHH
Confidence 6554444
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.7e-06 Score=91.79 Aligned_cols=101 Identities=23% Similarity=0.263 Sum_probs=60.2
Q ss_pred CCCeEEEECCccch-hHHHhhc--CCeEEEEcCCcccHHHHHHHHHHcC---------------CCcEEecCCC--C---
Q 044932 308 NIRVVLEIGSADLS-FVASLLA--KEVLTLTVGLKDDLVDLAQVALERG---------------FPAVVSPLGN--R--- 364 (689)
Q Consensus 308 ~~R~VLDVGCGtGs-faa~La~--~~V~gmDIsp~D~seamlq~A~eRG---------------L~~i~~~~dt--~--- 364 (689)
...+|||||||-|+ +.-+... ..++|+|++.. .++.|.+|- ..+.+...|. .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~-----si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~ 136 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEE-----SIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLR 136 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HH-----HHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHH
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHH-----HHHHHHHHHHHhccccccccccccchhheeccccccchhh
Confidence 46799999999886 4444433 24889999864 333444331 2223333332 1
Q ss_pred -CCCCCCCCcceEEeccccccccc---cHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 365 -RLPFPSGVFDAIHCDGCSITWHA---HGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 365 -~LPFpD~SFDlVhcs~cli~W~~---d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
.++.....||+|-|.++++.-.. ....+|..+...|||||+|+.+.|..
T Consensus 137 ~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 137 EKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp CTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred hhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 22333459999999765533222 23468999999999999999999864
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.3e-06 Score=85.97 Aligned_cols=96 Identities=15% Similarity=0.007 Sum_probs=66.6
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH-----------------cCCCcEEecCCCCCCCCC
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE-----------------RGFPAVVSPLGNRRLPFP 369 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e-----------------RGL~~i~~~~dt~~LPFp 369 (689)
..+||+.|||.|.-+.+|++. .|+|+|+|+. .++.+.+ ++....+.+.|.-.|+..
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~-----Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~ 118 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEK-----AVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI 118 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCCcEEEEecCHH-----HHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc
Confidence 468999999999999999876 5999999874 2333222 233344555665556532
Q ss_pred ---CCCcceEEec--cccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 370 ---SGVFDAIHCD--GCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 370 ---D~SFDlVhcs--~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
-+.||+|+-. .|.++ ......+..-|.++|+|||.+++..
T Consensus 119 ~~~~~~fD~VyDra~~~Alp-p~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALP-NDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred ccccCCcCeeeeehhHhcCC-HHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 2589998743 34444 2345789999999999999888763
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.3e-06 Score=83.67 Aligned_cols=120 Identities=22% Similarity=0.307 Sum_probs=75.1
Q ss_pred CeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHcCCCcEE-ecCCCCC-CC--CCCCCcceEEeccc
Q 044932 310 RVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALERGFPAVV-SPLGNRR-LP--FPSGVFDAIHCDGC 381 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eRGL~~i~-~~~dt~~-LP--FpD~SFDlVhcs~c 381 (689)
..+||||||.|.|...++. ..++|+++...-+ ...+..+..+++..+. ...++.. |+ ++++++|.|+..+-
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v-~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRV-AKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHH-HHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHH-HHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 4899999999999888874 4689999887433 3445556666877653 3344433 22 56799999986532
Q ss_pred ccccccc--------HHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHh--cceeEE
Q 044932 382 SITWHAH--------GGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTAS--ICWNIL 433 (689)
Q Consensus 382 li~W~~d--------~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~--l~W~~v 433 (689)
-||... -..+|.++.|+|+|||.|.+.+-...+.. .+.+.+.. -+|+.+
T Consensus 98 -DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~--~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 98 -DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAE--WMLEQFEESHPGFENI 156 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHH--HHHHHHHHHSTTEEEE
T ss_pred -CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHH--HHHHHHHhcCcCeEEc
Confidence 244421 14789999999999999999876543322 13333333 466655
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.4e-06 Score=90.67 Aligned_cols=91 Identities=16% Similarity=0.069 Sum_probs=61.2
Q ss_pred CCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHH----cCCCc-EEecCCCCCCCCCCCCcceEEe
Q 044932 309 IRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALE----RGFPA-VVSPLGNRRLPFPSGVFDAIHC 378 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~e----RGL~~-i~~~~dt~~LPFpD~SFDlVhc 378 (689)
..+|||+|||+|.+++.++.. .|+++|+++. +++.|++ .|+.. .+...+....+.....||+|++
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~-----~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~ 155 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRK-----ICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFV 155 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHH-----HHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEE
Confidence 468999999999998877642 3889998863 4444443 35542 2334454444444578999998
Q ss_pred ccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 379 DGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
.... + .....+.++|+|||.+++...
T Consensus 156 ~~g~-~------~ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 156 TVGV-D------EVPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred CCch-H------HhHHHHHHhcCCCCEEEEEeC
Confidence 6322 2 234467889999999988653
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.5e-05 Score=85.06 Aligned_cols=106 Identities=20% Similarity=0.236 Sum_probs=69.2
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHH----cCCCcEEecCCCC
Q 044932 293 LESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALE----RGFPAVVSPLGNR 364 (689)
Q Consensus 293 id~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~e----RGL~~i~~~~dt~ 364 (689)
.+.|.+.+|. .. ..+|||+|||.|-+++.|+.. .++-+|++. .+++.|++ .++.......+..
T Consensus 147 S~lLl~~l~~-~~---~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~-----~Av~~ar~Nl~~N~~~~~~v~~s~~ 217 (300)
T COG2813 147 SRLLLETLPP-DL---GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNA-----RAVESARKNLAANGVENTEVWASNL 217 (300)
T ss_pred HHHHHHhCCc-cC---CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCH-----HHHHHHHHhHHHcCCCccEEEEecc
Confidence 4556666663 22 238999999999999988864 466667654 45555544 3555421112223
Q ss_pred CCCCCCCCcceEEeccccccccc-------cHHHHHHHHHhccCCCcEEEEEcC
Q 044932 365 RLPFPSGVFDAIHCDGCSITWHA-------HGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 365 ~LPFpD~SFDlVhcs~cli~W~~-------d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
-.+..+ +||+|+|.- |+|. -...++.+..+.|++||.|.|...
T Consensus 218 ~~~v~~-kfd~IisNP---Pfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 218 YEPVEG-KFDLIISNP---PFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cccccc-cccEEEeCC---CccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 445554 999999863 2222 123788999999999999988775
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.2e-05 Score=81.65 Aligned_cols=153 Identities=21% Similarity=0.275 Sum_probs=90.2
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC--Ce--EEEEcCCcccHHHHHHHHHHcCCCcEEe--cCCC
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK--EV--LTLTVGLKDDLVDLAQVALERGFPAVVS--PLGN 363 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~--~V--~gmDIsp~D~seamlq~A~eRGL~~i~~--~~dt 363 (689)
+..++.|.++++. ...+||+||||||..+.+++.. .+ ...|+++... ....+.+.+.+++.+.. .+|.
T Consensus 12 ~pIl~vL~~~l~~-----~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~-~sI~a~~~~~~~~Nv~~P~~lDv 85 (204)
T PF06080_consen 12 DPILEVLKQYLPD-----SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLR-PSIRAWIAEAGLPNVRPPLALDV 85 (204)
T ss_pred hHHHHHHHHHhCc-----cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHH-hhHHHHHHhcCCcccCCCeEeec
Confidence 3556777777762 1226999999999988777753 11 2233333210 11222234445543321 1222
Q ss_pred CC--CC------CCCCCcceEEeccc--cccccccHHHHHHHHHhccCCCcEEEEEcCC---------Cc----------
Q 044932 364 RR--LP------FPSGVFDAIHCDGC--SITWHAHGGKLLLEMNRILRPSGYFILSTKH---------DS---------- 414 (689)
Q Consensus 364 ~~--LP------FpD~SFDlVhcs~c--li~W~~d~~~aL~EI~RVLRPGG~fVIsdp~---------~~---------- 414 (689)
.. .| +...+||+|+|... .++|. .-..+|.+..++|+|||.|++-+|- ..
T Consensus 86 ~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~-~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~r 164 (204)
T PF06080_consen 86 SAPPWPWELPAPLSPESFDAIFCINMLHISPWS-AVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSR 164 (204)
T ss_pred CCCCCccccccccCCCCcceeeehhHHHhcCHH-HHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcC
Confidence 22 22 23569999998742 23332 3467899999999999999998752 00
Q ss_pred -----hhHHHHHHHHHHhcceeEEEeeccccCceeEEEEEe
Q 044932 415 -----IEEEEALTTLTASICWNILAHKTDEISEMGVKIYQK 450 (689)
Q Consensus 415 -----le~~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqK 450 (689)
+.+.+.+..++...++.......-. ..+.++||+|
T Consensus 165 dp~~GiRD~e~v~~lA~~~GL~l~~~~~MP-ANN~~Lvfrk 204 (204)
T PF06080_consen 165 DPEWGIRDIEDVEALAAAHGLELEEDIDMP-ANNLLLVFRK 204 (204)
T ss_pred CCCcCccCHHHHHHHHHHCCCccCcccccC-CCCeEEEEeC
Confidence 0122568999999999875432211 2345888887
|
The function of this family is unknown. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.4e-07 Score=92.78 Aligned_cols=125 Identities=17% Similarity=0.244 Sum_probs=94.5
Q ss_pred CCCeEEEECCccchhHHHhhcCC---eEEEEcCCcccHHHHHHHHHHc---CCCcEEecCCCCCCCCCCCCcceEEeccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAKE---VLTLTVGLKDDLVDLAQVALER---GFPAVVSPLGNRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~~---V~gmDIsp~D~seamlq~A~eR---GL~~i~~~~dt~~LPFpD~SFDlVhcs~c 381 (689)
....++|||||.|..+..|...+ ++-||.+ ..|++.++.. ++...+.+.|.+.|+|.+++||+|+++.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS-----~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSl- 145 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTS-----YDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSL- 145 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecc-----hHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhh-
Confidence 45689999999999999998875 4666655 4677776654 4555667888899999999999999774
Q ss_pred cccccccHHHHHHHHHhccCCCcEEEEEcCCCc-----------------------h---hHHHHHHHHHHhcceeEEEe
Q 044932 382 SITWHAHGGKLLLEMNRILRPSGYFILSTKHDS-----------------------I---EEEEALTTLTASICWNILAH 435 (689)
Q Consensus 382 li~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~-----------------------l---e~~~~ie~La~~l~W~~v~~ 435 (689)
.+||..+....+..+.-.|||.|.|+-+.-... + -....+-.|+.+.+|..+..
T Consensus 146 slHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tv 225 (325)
T KOG2940|consen 146 SLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTV 225 (325)
T ss_pred hhhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCccccee
Confidence 569999999999999999999999997742210 0 11234666777778877666
Q ss_pred ecc
Q 044932 436 KTD 438 (689)
Q Consensus 436 ~~~ 438 (689)
+++
T Consensus 226 DtD 228 (325)
T KOG2940|consen 226 DTD 228 (325)
T ss_pred ccc
Confidence 555
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.4e-06 Score=87.42 Aligned_cols=98 Identities=18% Similarity=0.229 Sum_probs=66.9
Q ss_pred CeEEEECCccchhHHHhhcC------CeEEEEcCCcccHHHHHHHHHHcC------CCcEEecCCCC--CCCCCCCCcce
Q 044932 310 RVVLEIGSADLSFVASLLAK------EVLTLTVGLKDDLVDLAQVALERG------FPAVVSPLGNR--RLPFPSGVFDA 375 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~~------~V~gmDIsp~D~seamlq~A~eRG------L~~i~~~~dt~--~LPFpD~SFDl 375 (689)
.+||+||||.|....-|+.. .|.+.|++|. ++....++. ..+.+..++.. .-|...+++|+
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~-----Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~ 147 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPR-----AIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDI 147 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChH-----HHHHHHhccccchhhhcccceeccchhccCCCCcCccce
Confidence 38999999999865545432 3888898874 444444331 12222333332 33567799999
Q ss_pred EEecccccccc-ccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 376 IHCDGCSITWH-AHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 376 Vhcs~cli~W~-~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
|++.+++..-+ +....++..++|+|||||.+++.|-.
T Consensus 148 it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg 185 (264)
T KOG2361|consen 148 ITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYG 185 (264)
T ss_pred EEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecc
Confidence 99887664433 34568999999999999999999743
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.2e-05 Score=82.83 Aligned_cols=131 Identities=21% Similarity=0.272 Sum_probs=79.6
Q ss_pred eEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHH----HcCCCcEEecCCCCCCCCCCCCcceEEecccc
Q 044932 311 VVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVAL----ERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCS 382 (689)
Q Consensus 311 ~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~----eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cl 382 (689)
+|||||||+|..|.+|+.. .|+++|++|. +++.|. ..|+...+......--++. +.||+|+|+-=.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~-----Al~~A~~Na~~~~l~~~~~~~~dlf~~~~-~~fDlIVsNPPY 186 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPD-----ALALARENAERNGLVRVLVVQSDLFEPLR-GKFDLIVSNPPY 186 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHH-----HHHHHHHHHHHcCCccEEEEeeecccccC-CceeEEEeCCCC
Confidence 7999999999998888753 5999999873 444444 3465222221111111233 489999985211
Q ss_pred cccc--------------------cc----HHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcc-eeEEEeec
Q 044932 383 ITWH--------------------AH----GGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASIC-WNILAHKT 437 (689)
Q Consensus 383 i~W~--------------------~d----~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~-W~~v~~~~ 437 (689)
++-. .+ ...++.++.++|+|||.+++....... ..+.++....+ +..+....
T Consensus 187 ip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~---~~v~~~~~~~~~~~~v~~~~ 263 (280)
T COG2890 187 IPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQG---EAVKALFEDTGFFEIVETLK 263 (280)
T ss_pred CCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcH---HHHHHHHHhcCCceEEEEEe
Confidence 1100 01 124677899999999999998765433 34778888888 44443333
Q ss_pred cccCceeEEEEEe
Q 044932 438 DEISEMGVKIYQK 450 (689)
Q Consensus 438 ~~~g~~~i~IwqK 450 (689)
+-++...+.+.++
T Consensus 264 d~~g~~rv~~~~~ 276 (280)
T COG2890 264 DLFGRDRVVLAKL 276 (280)
T ss_pred cCCCceEEEEEEe
Confidence 3344444555443
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.9e-06 Score=84.22 Aligned_cols=94 Identities=17% Similarity=0.249 Sum_probs=67.3
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
+.++|||||+|+|.++..++.+ .++.+|+ +..++.+.+ .-...+...|.. -|+|. +|+++..+++.
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl------p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh 169 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL------PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLH 169 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-------HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGG
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc------Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhh
Confidence 5689999999999999888753 4777776 345555555 222334344443 56784 99999998888
Q ss_pred cccc-cHHHHHHHHHhccCCC--cEEEEEcC
Q 044932 384 TWHA-HGGKLLLEMNRILRPS--GYFILSTK 411 (689)
Q Consensus 384 ~W~~-d~~~aL~EI~RVLRPG--G~fVIsdp 411 (689)
.|.+ +-..+|+.+++.|+|| |.++|.+.
T Consensus 170 ~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 170 DWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp GS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 8875 3468899999999999 99999874
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.1e-06 Score=85.23 Aligned_cols=119 Identities=21% Similarity=0.200 Sum_probs=72.0
Q ss_pred CCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHcCCCc-EEecCCCCCCCCCCCCcceEEe---
Q 044932 308 NIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALERGFPA-VVSPLGNRRLPFPSGVFDAIHC--- 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eRGL~~-i~~~~dt~~LPFpD~SFDlVhc--- 378 (689)
...+|||+|||+|..+..++. ..|+++|+++... ..+.+.+...|+.. .+...|+..++...+.||.|++
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l-~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRT-KVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHH-HHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 346899999999998876653 2489999886422 11222233346543 3344555556655677999985
Q ss_pred -ccc-cc--------cccc--------cHHHHHHHHHhccCCCcEEEEEcCCCchhH-HHHHHHHHHh
Q 044932 379 -DGC-SI--------TWHA--------HGGKLLLEMNRILRPSGYFILSTKHDSIEE-EEALTTLTAS 427 (689)
Q Consensus 379 -s~c-li--------~W~~--------d~~~aL~EI~RVLRPGG~fVIsdp~~~le~-~~~ie~La~~ 427 (689)
+.. .+ .|.. .-..+|..+.++|||||+++.++-.-..++ ..-++.+++.
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~ 217 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEK 217 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHh
Confidence 211 00 1111 113488899999999999999975433332 3345555543
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.4e-06 Score=92.08 Aligned_cols=118 Identities=14% Similarity=0.145 Sum_probs=72.9
Q ss_pred CCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHcCCCc-EEecCCCCCCC-CCCCCcceEEe--
Q 044932 308 NIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALERGFPA-VVSPLGNRRLP-FPSGVFDAIHC-- 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eRGL~~-i~~~~dt~~LP-FpD~SFDlVhc-- 378 (689)
...+|||+|||+|+.+.+++. ..|+++|+++... ..+.+.+.+.|+.. .+...|+..++ +.+++||+|++
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl-~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKI-QLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECC
Confidence 346899999999987766553 2499999986422 12223333446653 34456666666 55689999986
Q ss_pred --ccc-ccc------cccc----------HHHHHHHHHhccCCCcEEEEEcCCCchh-HHHHHHHHHH
Q 044932 379 --DGC-SIT------WHAH----------GGKLLLEMNRILRPSGYFILSTKHDSIE-EEEALTTLTA 426 (689)
Q Consensus 379 --s~c-li~------W~~d----------~~~aL~EI~RVLRPGG~fVIsdp~~~le-~~~~ie~La~ 426 (689)
+.. .+. |... -..+|..+.++|||||++++++-.-..+ ....++.+++
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~ 383 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVY 383 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHH
Confidence 211 111 1111 1356889999999999999987543332 2233555544
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.7e-06 Score=86.18 Aligned_cols=135 Identities=15% Similarity=0.233 Sum_probs=86.0
Q ss_pred cchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc----CCCc
Q 044932 285 FKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER----GFPA 356 (689)
Q Consensus 285 F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR----GL~~ 356 (689)
|.-+.+.- .|..+++.. ...+|||+|||+|..+..|+.+ .+.++++.+. +.++|.+. ++..
T Consensus 27 ~~~~~Dai--LL~~~~~~~----~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~-----~a~~A~~nv~ln~l~~ 95 (248)
T COG4123 27 FRYGTDAI--LLAAFAPVP----KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEE-----AAEMAQRNVALNPLEE 95 (248)
T ss_pred cccccHHH--HHHhhcccc----cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHH-----HHHHHHHHHHhCcchh
Confidence 44455533 355555421 3578999999999998888865 4888988763 44454432 2222
Q ss_pred E--EecCCCCCC--CCCCCCcceEEecc---------cc------ccc--cccHHHHHHHHHhccCCCcEEEEEcCCCch
Q 044932 357 V--VSPLGNRRL--PFPSGVFDAIHCDG---------CS------ITW--HAHGGKLLLEMNRILRPSGYFILSTKHDSI 415 (689)
Q Consensus 357 i--~~~~dt~~L--PFpD~SFDlVhcs~---------cl------i~W--~~d~~~aL~EI~RVLRPGG~fVIsdp~~~l 415 (689)
. +...|...+ ++.-.+||+|+|.- |- -+| .-+.+..++-..++|||||+|++.-++..+
T Consensus 96 ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl 175 (248)
T COG4123 96 RIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERL 175 (248)
T ss_pred ceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHH
Confidence 2 233343222 23334899999951 00 001 113456778888999999999999998655
Q ss_pred hHHHHHHHHHHhcceeEE
Q 044932 416 EEEEALTTLTASICWNIL 433 (689)
Q Consensus 416 e~~~~ie~La~~l~W~~v 433 (689)
.+ +.+++.++.|...
T Consensus 176 ~e---i~~~l~~~~~~~k 190 (248)
T COG4123 176 AE---IIELLKSYNLEPK 190 (248)
T ss_pred HH---HHHHHHhcCCCce
Confidence 43 7788888888764
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.16 E-value=7.9e-06 Score=78.80 Aligned_cols=94 Identities=15% Similarity=0.122 Sum_probs=61.8
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcC--C-CcEEecCCCCCCCCCCCCcceEEecccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERG--F-PAVVSPLGNRRLPFPSGVFDAIHCDGCS 382 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRG--L-~~i~~~~dt~~LPFpD~SFDlVhcs~cl 382 (689)
...+|||+|||+|.++..++.+ .|+++|+++ .+++.+.++- . ...+...|...+++++..||.|++..
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~-----~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~-- 85 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAARVTAIEIDP-----RLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNL-- 85 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCCeEEEEECCH-----HHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECC--
Confidence 3468999999999999988865 589999886 3555555441 1 23344566778888887899998642
Q ss_pred ccccccHHHHHHHHHh--ccCCCcEEEEEc
Q 044932 383 ITWHAHGGKLLLEMNR--ILRPSGYFILST 410 (689)
Q Consensus 383 i~W~~d~~~aL~EI~R--VLRPGG~fVIsd 410 (689)
+++.. ...+..+.. .+.++|+|++.-
T Consensus 86 -Py~~~-~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 86 -PYNIS-TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred -CcccH-HHHHHHHHhcCCCcceEEEEEEH
Confidence 32211 123333332 245888888874
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=8.6e-06 Score=83.78 Aligned_cols=106 Identities=21% Similarity=0.279 Sum_probs=78.4
Q ss_pred CeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCC-CcEEecCCCCCC-C--CCCCCcceEEeccc
Q 044932 310 RVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGF-PAVVSPLGNRRL-P--FPSGVFDAIHCDGC 381 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL-~~i~~~~dt~~L-P--FpD~SFDlVhcs~c 381 (689)
..+||||||.|.|...++.. +++||++... ....++..+.+.++ ...+...|+..+ . ++++|+|-|+..+.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~-~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVP-GVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehH-HHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 47999999999999888864 5899998764 33566777888899 655665665332 2 56669999986543
Q ss_pred cccccccH--------HHHHHHHHhccCCCcEEEEEcCCCchhH
Q 044932 382 SITWHAHG--------GKLLLEMNRILRPSGYFILSTKHDSIEE 417 (689)
Q Consensus 382 li~W~~d~--------~~aL~EI~RVLRPGG~fVIsdp~~~le~ 417 (689)
-+|+... ...|.++.|+|+|||.|.+.+-...+..
T Consensus 129 -DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e 171 (227)
T COG0220 129 -DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFE 171 (227)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHH
Confidence 3676422 4789999999999999999887654433
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.6e-05 Score=84.13 Aligned_cols=118 Identities=8% Similarity=0.011 Sum_probs=75.9
Q ss_pred CCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecccccc
Q 044932 309 IRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSIT 384 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~ 384 (689)
..+|||+|||+|.++..++. ..|+++|+++ .|++.|+++-....+...|...++ .+.+||+|++.-...+
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp-----~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~ 138 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNP-----EFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGK 138 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCH-----HHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCccc
Confidence 35899999999998876654 3589999886 577777665222334445555443 3478999998422211
Q ss_pred --------cccc-----------HHHHHHHHHhccCCCcEEEEEc--CCCch--hHHHHHHHHHHhcceeE
Q 044932 385 --------WHAH-----------GGKLLLEMNRILRPSGYFILST--KHDSI--EEEEALTTLTASICWNI 432 (689)
Q Consensus 385 --------W~~d-----------~~~aL~EI~RVLRPGG~fVIsd--p~~~l--e~~~~ie~La~~l~W~~ 432 (689)
|... ....+....++|+|+|.+++.- .+-+. ...+++..+++..++..
T Consensus 139 l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 139 INTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred cCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEe
Confidence 1001 2467788899999999776652 22111 12356778888888865
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.5e-06 Score=88.33 Aligned_cols=102 Identities=20% Similarity=0.224 Sum_probs=68.2
Q ss_pred CCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHc-----------CCCcEEecCCC------CCCC
Q 044932 308 NIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALER-----------GFPAVVSPLGN------RRLP 367 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eR-----------GL~~i~~~~dt------~~LP 367 (689)
.+..+||+|||-|+=....-.. .++++||+... ++.|..| -.++.+.++|. ..++
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevS-----I~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e 191 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVS-----INQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLE 191 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhcc-----HHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhcc
Confidence 4578999999999743332222 47899998643 3333332 12334444442 4567
Q ss_pred CCCCCcceEEecccccc-cc--ccHHHHHHHHHhccCCCcEEEEEcCCCc
Q 044932 368 FPSGVFDAIHCDGCSIT-WH--AHGGKLLLEMNRILRPSGYFILSTKHDS 414 (689)
Q Consensus 368 FpD~SFDlVhcs~cli~-W~--~d~~~aL~EI~RVLRPGG~fVIsdp~~~ 414 (689)
++|.+||+|-|.+|++. |. +....+|+.+.+.|||||+||-+.|...
T Consensus 192 ~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 192 FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 88888999999766422 32 2345789999999999999999988754
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.2e-05 Score=78.10 Aligned_cols=90 Identities=23% Similarity=0.270 Sum_probs=57.0
Q ss_pred CCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCCCcE-EecCCCC-----CCCCCCCCcceEEe
Q 044932 308 NIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGFPAV-VSPLGNR-----RLPFPSGVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL~~i-~~~~dt~-----~LPFpD~SFDlVhc 378 (689)
...+|||+|||||.|+..|+.. .|+++|+++. |+...+....... +...+.. .++..-..||++++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~-----~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsfi 149 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYN-----QLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFI 149 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHH-----HHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEe
Confidence 3578999999999999988865 4899998763 4443333222211 2222222 22212236777766
Q ss_pred ccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 379 DGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+.+ ..|..+.+.|+| |.+++...|
T Consensus 150 S~~---------~~l~~i~~~l~~-~~~~~L~KP 173 (228)
T TIGR00478 150 SLI---------SILPELDLLLNP-NDLTLLFKP 173 (228)
T ss_pred ehH---------hHHHHHHHHhCc-CeEEEEcCh
Confidence 542 368899999999 888876554
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.1e-05 Score=80.16 Aligned_cols=120 Identities=19% Similarity=0.124 Sum_probs=74.4
Q ss_pred CCCeEEEECCccchhHHHhhcCC--eEEEEcCCcccHHHHHHHH-HHcCCCc----------------EEecCCCCCCCC
Q 044932 308 NIRVVLEIGSADLSFVASLLAKE--VLTLTVGLKDDLVDLAQVA-LERGFPA----------------VVSPLGNRRLPF 368 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~~--V~gmDIsp~D~seamlq~A-~eRGL~~----------------i~~~~dt~~LPF 368 (689)
...+||..|||.|.-..+|++++ |+|+|+|+ .+++.+ .++++.. .+.+.|.-.++-
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~-----~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSP-----TAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHTTEEEEEEES-H-----HHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred CCCeEEEeCCCChHHHHHHHHCCCeEEEEecCH-----HHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 34589999999999888888764 99999986 345554 4444311 112333333332
Q ss_pred CC-CCcceEEe--ccccccccccHHHHHHHHHhccCCCcEEEEEc--C-------CCchhHHHHHHHHHHhcceeEEE
Q 044932 369 PS-GVFDAIHC--DGCSITWHAHGGKLLLEMNRILRPSGYFILST--K-------HDSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 369 pD-~SFDlVhc--s~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd--p-------~~~le~~~~ie~La~~l~W~~v~ 434 (689)
.+ +.||+|+= +.|.++ ......+..-|.++|+|||.+++.. . |++.-..+++.++.. -+|++..
T Consensus 112 ~~~g~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~ 187 (218)
T PF05724_consen 112 EDVGKFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEE 187 (218)
T ss_dssp SCHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEE
T ss_pred hhcCCceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEE
Confidence 22 47999983 456666 4566789999999999999944432 1 122223456888877 5776643
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.3e-05 Score=83.31 Aligned_cols=91 Identities=11% Similarity=0.125 Sum_probs=58.5
Q ss_pred CCeEEEECCccchhHHHhhc-------CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecc-
Q 044932 309 IRVVLEIGSADLSFVASLLA-------KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDG- 380 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~-------~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~- 380 (689)
..+|||+|||+|.++..++. ..|+++|+++ .+++.|++......+...|....++ +.+||+|++.-
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~-----~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPP 123 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNH-----TYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPP 123 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCH-----HHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCC
Confidence 35899999999999876653 2588999876 4667776543233444455544455 47999999851
Q ss_pred -cccc---cc------ccHHHHHHHHHhccCCCcE
Q 044932 381 -CSIT---WH------AHGGKLLLEMNRILRPSGY 405 (689)
Q Consensus 381 -cli~---W~------~d~~~aL~EI~RVLRPGG~ 405 (689)
.-+. +. .-...++....|+|+||+.
T Consensus 124 Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 124 FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 1001 00 0123477788888887775
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.6e-05 Score=88.35 Aligned_cols=118 Identities=22% Similarity=0.286 Sum_probs=71.0
Q ss_pred CCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHcCCCc-EEecCCCCCC--CCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALERGFPA-VVSPLGNRRL--PFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eRGL~~-i~~~~dt~~L--PFpD~SFDlVhcs 379 (689)
+..+|||+|||+|.++..++. ..|+++|+++... ..+.+.+...|+.. .+...|...+ +++ ++||+|++.
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l-~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D 327 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKL-KLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVD 327 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEc
Confidence 346899999999998877664 2489999886422 11222233346543 3334555444 245 789999863
Q ss_pred c-cc----------ccccccH----------HHHHHHHHhccCCCcEEEEEcCCCchhH-HHHHHHHHHh
Q 044932 380 G-CS----------ITWHAHG----------GKLLLEMNRILRPSGYFILSTKHDSIEE-EEALTTLTAS 427 (689)
Q Consensus 380 ~-cl----------i~W~~d~----------~~aL~EI~RVLRPGG~fVIsdp~~~le~-~~~ie~La~~ 427 (689)
. |. +.|.... ..+|.++.|+|||||++++++-.-..++ ...+..+++.
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~ 397 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEE 397 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHh
Confidence 1 11 1121111 2578999999999999998875433322 2335555554
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.5e-05 Score=82.93 Aligned_cols=119 Identities=16% Similarity=0.157 Sum_probs=72.4
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc--------C-C---CcEEecCCCCC-CCCCC
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER--------G-F---PAVVSPLGNRR-LPFPS 370 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR--------G-L---~~i~~~~dt~~-LPFpD 370 (689)
..++||++|||+|..+..++.. .|+++|+++ .+++.|+.. + + ...+...|+.. ++-.+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDp-----eVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~ 224 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDG-----SMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPS 224 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCH-----HHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcC
Confidence 5689999999999887777754 478888876 577777751 1 1 12223334322 33345
Q ss_pred CCcceEEecccccccc-----ccHHHHHHHHHhccCCCcEEEEEcCCCchh--HHHHHHHHHHhcceeE
Q 044932 371 GVFDAIHCDGCSITWH-----AHGGKLLLEMNRILRPSGYFILSTKHDSIE--EEEALTTLTASICWNI 432 (689)
Q Consensus 371 ~SFDlVhcs~cli~W~-----~d~~~aL~EI~RVLRPGG~fVIsdp~~~le--~~~~ie~La~~l~W~~ 432 (689)
+.||+|++.... +.. ..-..++..+.+.|+|||.|++........ ....+...++..++..
T Consensus 225 ~~YDVIIvDl~D-P~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v 292 (374)
T PRK01581 225 SLYDVIIIDFPD-PATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTV 292 (374)
T ss_pred CCccEEEEcCCC-ccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCce
Confidence 789999975211 100 112468899999999999999886543221 1122444455554443
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.4e-05 Score=79.54 Aligned_cols=99 Identities=17% Similarity=0.235 Sum_probs=62.1
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc-----C-C---CcEEecCCCCC-CCCCCCCc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER-----G-F---PAVVSPLGNRR-LPFPSGVF 373 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR-----G-L---~~i~~~~dt~~-LPFpD~SF 373 (689)
..++||+||||+|.++..++.. .|+++|+++. +++.|.+. + + ...+...|+.. +....++|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~-----vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~y 146 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEK-----VIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTF 146 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHH-----HHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCc
Confidence 4569999999999988777653 4888888763 44444442 1 0 11122233211 11224799
Q ss_pred ceEEecccccccccc----HHHHHHHHHhccCCCcEEEEEcCC
Q 044932 374 DAIHCDGCSITWHAH----GGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 374 DlVhcs~cli~W~~d----~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
|+|++... .++... ...++..+.++|+|||.+++....
T Consensus 147 DvIi~D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~ 188 (270)
T TIGR00417 147 DVIIVDST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQSES 188 (270)
T ss_pred cEEEEeCC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 99987532 111111 346788999999999999998554
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.1e-05 Score=79.41 Aligned_cols=109 Identities=12% Similarity=0.094 Sum_probs=65.6
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHcCCCc--EEecCC
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALERGFPA--VVSPLG 362 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eRGL~~--i~~~~d 362 (689)
..++..|.++. ..++|||+|||+|.-+.+|+. ..|+++|+++... ....+.+.+.|+.. .+...+
T Consensus 57 g~~L~~l~~~~-------~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~-~~A~~n~~~~gl~~~i~~~~gd 128 (234)
T PLN02781 57 GLFLSMLVKIM-------NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAY-EVGLEFIKKAGVDHKINFIQSD 128 (234)
T ss_pred HHHHHHHHHHh-------CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcc
Confidence 34555555442 357899999999975544432 2599999987422 12222233346542 233333
Q ss_pred CCC-CC-----CCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 363 NRR-LP-----FPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 363 t~~-LP-----FpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
+.. |+ .++.+||+|++-.. ......++.++.++|||||.+++..
T Consensus 129 a~~~L~~l~~~~~~~~fD~VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 129 ALSALDQLLNNDPKPEFDFAFVDAD----KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred HHHHHHHHHhCCCCCCCCEEEECCC----HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 321 22 12478999986421 1233478899999999999999754
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.3e-05 Score=81.39 Aligned_cols=91 Identities=21% Similarity=0.197 Sum_probs=55.1
Q ss_pred CCCeEEEECCccchhHHHhhc---C--CeEEEEcCCcccHHHHHHHHHHc----CCCc-EEecCCCCCCCC-CCCCcceE
Q 044932 308 NIRVVLEIGSADLSFVASLLA---K--EVLTLTVGLKDDLVDLAQVALER----GFPA-VVSPLGNRRLPF-PSGVFDAI 376 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~---~--~V~gmDIsp~D~seamlq~A~eR----GL~~-i~~~~dt~~LPF-pD~SFDlV 376 (689)
+..+|||||||+|.+++.|+. . .|+++++.+. .++.|.++ ++.. .+...|.. ..+ ....||.|
T Consensus 72 pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~-----l~~~A~~~l~~~~~~nv~~~~gdg~-~g~~~~apfD~I 145 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPE-----LAERARRNLARLGIDNVEVVVGDGS-EGWPEEAPFDRI 145 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHH-----HHHHHHHHHHHHTTHSEEEEES-GG-GTTGGG-SEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHH-----HHHHHHHHHHHhccCceeEEEcchh-hccccCCCcCEE
Confidence 457999999999998876653 2 3788888763 33333332 5533 23333432 223 23689999
Q ss_pred EeccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 377 HCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 377 hcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
++.... . ..-..+.+.|++||++++-..
T Consensus 146 ~v~~a~-~------~ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 146 IVTAAV-P------EIPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EESSBB-S------S--HHHHHTEEEEEEEEEEES
T ss_pred EEeecc-c------hHHHHHHHhcCCCcEEEEEEc
Confidence 986433 2 233567788999999998654
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.92 E-value=5.5e-05 Score=85.82 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=79.7
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCcEEe-cCCCCCC--CCCCCCcceEEecc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPAVVS-PLGNRRL--PFPSGVFDAIHCDG 380 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~i~~-~~dt~~L--PFpD~SFDlVhcs~ 380 (689)
....+||||||.|.|...++.. .++|+++...-. ..++..+.++++..... ..+...+ -|+++++|.|+..+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~-~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGV-ANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHH-HHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 4578999999999998888753 689999876422 33445556667765432 2232212 27899999998754
Q ss_pred cccccccc--------HHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeE
Q 044932 381 CSITWHAH--------GGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNI 432 (689)
Q Consensus 381 cli~W~~d--------~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~ 432 (689)
- -||... -..+|.++.|+|+|||.|.+.+-...+..+ .++.+.+.-+|+.
T Consensus 426 P-DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~-~~~~~~~~~~f~~ 483 (506)
T PRK01544 426 P-DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYE-AIELIQQNGNFEI 483 (506)
T ss_pred C-CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHH-HHHHHHhCCCeEe
Confidence 2 356431 147899999999999999998765433322 1333333334554
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00011 Score=83.58 Aligned_cols=117 Identities=16% Similarity=0.157 Sum_probs=74.7
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc-C--------C--C-cEEecCCCCC-CCCCC
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER-G--------F--P-AVVSPLGNRR-LPFPS 370 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR-G--------L--~-~i~~~~dt~~-LPFpD 370 (689)
..++|||+|||+|..+..++.+ .|+++|+++ .+++.|++. . + + ..+...|... +...+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~-----~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~ 371 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDP-----AMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLA 371 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCH-----HHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCC
Confidence 4678999999999988777654 488888876 577777662 1 1 1 1223334322 22234
Q ss_pred CCcceEEecccccccccc-----HHHHHHHHHhccCCCcEEEEEcCCCch--hHHHHHHHHHHhcce
Q 044932 371 GVFDAIHCDGCSITWHAH-----GGKLLLEMNRILRPSGYFILSTKHDSI--EEEEALTTLTASICW 430 (689)
Q Consensus 371 ~SFDlVhcs~cli~W~~d-----~~~aL~EI~RVLRPGG~fVIsdp~~~l--e~~~~ie~La~~l~W 430 (689)
++||+|++.. ..++... ...++..+.++|+|||.+++...+... .....+.+.++..++
T Consensus 372 ~~fDvIi~D~-~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 372 EKFDVIIVDL-PDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred CCCCEEEEeC-CCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence 7999999753 2222211 135788999999999999997654332 222345566666667
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=97.91 E-value=6.5e-05 Score=80.44 Aligned_cols=99 Identities=21% Similarity=0.269 Sum_probs=63.4
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc------CC---CcEEecCCCCC-C-CCCCCC
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER------GF---PAVVSPLGNRR-L-PFPSGV 372 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR------GL---~~i~~~~dt~~-L-PFpD~S 372 (689)
..++||+||||.|.++..++.+ .|+++++++ .+++.|++. ++ ...+...|+.. + ..+++.
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~-----~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~ 165 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDK-----MVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGT 165 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCH-----HHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCC
Confidence 4689999999999998888764 367778775 455555543 11 12233334311 1 123578
Q ss_pred cceEEecccccccccc----HHHHHHHHHhccCCCcEEEEEcCC
Q 044932 373 FDAIHCDGCSITWHAH----GGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 373 FDlVhcs~cli~W~~d----~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
||+|++-. .-++... -..++..+.++|+|||.+++....
T Consensus 166 yDvIi~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s 208 (308)
T PLN02366 166 YDAIIVDS-SDPVGPAQELFEKPFFESVARALRPGGVVCTQAES 208 (308)
T ss_pred CCEEEEcC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCC
Confidence 99999742 2222211 236789999999999999886543
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=97.89 E-value=3.6e-05 Score=78.86 Aligned_cols=129 Identities=13% Similarity=0.119 Sum_probs=80.7
Q ss_pred CCCeEEEECCccchhHHHhhcCCeEEEEcCCcccHHHHHHHHHHcC-----CCcEEecCCCCCCCCCCCCcceEEecccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERG-----FPAVVSPLGNRRLPFPSGVFDAIHCDGCS 382 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~~V~gmDIsp~D~seamlq~A~eRG-----L~~i~~~~dt~~LPFpD~SFDlVhcs~cl 382 (689)
...++||.|||.|..+..|+-.-.-.+|+.. ..+..++.|.+.- -...+...+.+..--+.+.||+|+|--|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVE--p~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVE--PVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEE--S-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEec--cCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 4678999999999999877654333445442 2356777777531 11223344444443334799999998888
Q ss_pred ccccc-cHHHHHHHHHhccCCCcEEEEEcCC---C----------chhHHHHHHHHHHhcceeEEEeecc
Q 044932 383 ITWHA-HGGKLLLEMNRILRPSGYFILSTKH---D----------SIEEEEALTTLTASICWNILAHKTD 438 (689)
Q Consensus 383 i~W~~-d~~~aL~EI~RVLRPGG~fVIsdp~---~----------~le~~~~ie~La~~l~W~~v~~~~~ 438 (689)
.|.++ +.-.+|.-....|+|+|+++|-+.. + +......+.+|.+..+++++....+
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 77553 5578899999999999999997521 1 1112457999999999999887655
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00035 Score=70.28 Aligned_cols=113 Identities=15% Similarity=0.113 Sum_probs=72.4
Q ss_pred CCCeEEEECCccchhHHHhh--c--CCeEEEEcCCcccHHHHHHHHHH-cCCCcEEec-CCC-CCCCCCCCCcceEEecc
Q 044932 308 NIRVVLEIGSADLSFVASLL--A--KEVLTLTVGLKDDLVDLAQVALE-RGFPAVVSP-LGN-RRLPFPSGVFDAIHCDG 380 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La--~--~~V~gmDIsp~D~seamlq~A~e-RGL~~i~~~-~dt-~~LPFpD~SFDlVhcs~ 380 (689)
+..+++|||||||+.+..++ . ..|++++-++. ....++...+ -|++....+ .++ ..|+=.+ +||.|+...
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~--a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIGG 110 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEE--ALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPDAIFIGG 110 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHH--HHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCCEEEECC
Confidence 45799999999999887666 2 25888887653 1223333333 366654332 222 3333222 899998765
Q ss_pred ccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcce
Q 044932 381 CSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICW 430 (689)
Q Consensus 381 cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W 430 (689)
. .+...+|.-....|||||++++..-. ++....+.+.++.+++
T Consensus 111 g-----~~i~~ile~~~~~l~~ggrlV~nait--lE~~~~a~~~~~~~g~ 153 (187)
T COG2242 111 G-----GNIEEILEAAWERLKPGGRLVANAIT--LETLAKALEALEQLGG 153 (187)
T ss_pred C-----CCHHHHHHHHHHHcCcCCeEEEEeec--HHHHHHHHHHHHHcCC
Confidence 3 13458899999999999999997643 2333335566777788
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.2e-05 Score=80.49 Aligned_cols=100 Identities=20% Similarity=0.351 Sum_probs=66.4
Q ss_pred CCCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHcC---------CC----cE----Ee-------
Q 044932 308 NIRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALERG---------FP----AV----VS------- 359 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eRG---------L~----~i----~~------- 359 (689)
....+|||||-.|.+++.++. +.|+|+||++. .++.|.+.- +. +. +.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~-----LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~ 132 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPV-----LIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNE 132 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHH-----HHHHHHHhccccccccccccCCCcccccccccccccccc
Confidence 356799999999998887774 46999999874 455555421 00 00 00
Q ss_pred --------------------cCCCC-CCCCCCCCcceEEecc----ccccccccH-HHHHHHHHhccCCCcEEEEEcCC
Q 044932 360 --------------------PLGNR-RLPFPSGVFDAIHCDG----CSITWHAHG-GKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 360 --------------------~~dt~-~LPFpD~SFDlVhcs~----cli~W~~d~-~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
++... -|-+....||+|.|-. .++.|+++. -.+|.-+.|.|.|||+|++-..+
T Consensus 133 a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQp 211 (288)
T KOG2899|consen 133 ADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQP 211 (288)
T ss_pred ccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCc
Confidence 00000 0112356799999852 455676554 57899999999999999987654
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=8.4e-05 Score=87.36 Aligned_cols=117 Identities=15% Similarity=0.079 Sum_probs=70.9
Q ss_pred CCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHH----cCCC---cEEecCCCCC-CCCCCCCcceEE
Q 044932 309 IRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALE----RGFP---AVVSPLGNRR-LPFPSGVFDAIH 377 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~e----RGL~---~i~~~~dt~~-LPFpD~SFDlVh 377 (689)
.++|||+|||+|.|+.+++.. .|+++|+++. +++.|.+ .|+. ..+...|... |.-..++||+|+
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~-----al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIi 613 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNT-----YLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIF 613 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHH-----HHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEE
Confidence 478999999999999887753 3899998864 4444433 3553 2333344311 111147899999
Q ss_pred eccccc----------cccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEE
Q 044932 378 CDGCSI----------TWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 378 cs~cli----------~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v 433 (689)
+.--.+ ....+...++..+.++|+|||.|+++.-...... ....+...++...
T Consensus 614 lDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~---~~~~~~~~g~~~~ 676 (702)
T PRK11783 614 IDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKM---DEEGLAKLGLKAE 676 (702)
T ss_pred ECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCh---hHHHHHhCCCeEE
Confidence 841100 0011234677888999999999998765433322 1344555566553
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.85 E-value=8.9e-05 Score=82.45 Aligned_cols=113 Identities=16% Similarity=0.193 Sum_probs=71.1
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH----cCCC-cEEecCCCC----CCCCCCCCcceEE
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE----RGFP-AVVSPLGNR----RLPFPSGVFDAIH 377 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e----RGL~-~i~~~~dt~----~LPFpD~SFDlVh 377 (689)
..+|||+|||+|.++..|+.. .|+++|+++. |++.|.+ .++. ..+...+.. .+++++++||+|+
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~-----al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi 372 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEA-----MVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVL 372 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHH-----HHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEE
Confidence 468999999999999888754 5899998874 4444443 3553 233334432 3457678899998
Q ss_pred eccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEE
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~ 434 (689)
+.- +... ....+..+.+ |+|++.++++..+..+.. .+..|. ..+|++..
T Consensus 373 ~dP---Pr~g-~~~~~~~l~~-~~~~~ivyvSCnp~tlaR--Dl~~L~-~~gY~l~~ 421 (443)
T PRK13168 373 LDP---PRAG-AAEVMQALAK-LGPKRIVYVSCNPATLAR--DAGVLV-EAGYRLKR 421 (443)
T ss_pred ECc---CCcC-hHHHHHHHHh-cCCCeEEEEEeChHHhhc--cHHHHh-hCCcEEEE
Confidence 742 2111 2245555555 699999999987654321 244443 34676643
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.84 E-value=8.3e-05 Score=79.11 Aligned_cols=115 Identities=15% Similarity=0.109 Sum_probs=69.9
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCC-cEEecCCCCCCCC-CCCCcceEEecccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFP-AVVSPLGNRRLPF-PSGVFDAIHCDGCSIT 384 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~-~i~~~~dt~~LPF-pD~SFDlVhcs~cli~ 384 (689)
..+|||+|||+|.++..|+.. .|+++|+++... +...+.+...++. ..+...+...+.. .++.||+|++.- +
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av-~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dP---P 249 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAI-ACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNP---P 249 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHH-HHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECC---C
Confidence 468999999999999988865 599999887422 1222333344664 3344455444322 346799998751 1
Q ss_pred ccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEE
Q 044932 385 WHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 385 W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v 433 (689)
.. .....+.++..-++|++.++++..+..+.. .+..+ -+|++.
T Consensus 250 r~-G~~~~~~~~l~~~~~~~ivyvsc~p~t~~r--d~~~l---~~y~~~ 292 (315)
T PRK03522 250 RR-GIGKELCDYLSQMAPRFILYSSCNAQTMAK--DLAHL---PGYRIE 292 (315)
T ss_pred CC-CccHHHHHHHHHcCCCeEEEEECCcccchh--HHhhc---cCcEEE
Confidence 11 111344455555789999999987765432 23333 367664
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=8.5e-05 Score=78.97 Aligned_cols=98 Identities=16% Similarity=0.261 Sum_probs=64.6
Q ss_pred CeEEEECCccch----hHHHhhc--------CCeEEEEcCCcccHHHHHHHHHHc--------CCCc-------------
Q 044932 310 RVVLEIGSADLS----FVASLLA--------KEVLTLTVGLKDDLVDLAQVALER--------GFPA------------- 356 (689)
Q Consensus 310 R~VLDVGCGtGs----faa~La~--------~~V~gmDIsp~D~seamlq~A~eR--------GL~~------------- 356 (689)
-+|+.+||.||. +|..|.+ ..|+|+||++ .+++.|++- +++.
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~-----~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~ 191 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDT-----EVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGP 191 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCH-----HHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCC
Confidence 589999999994 4444433 2488888876 455555431 1110
Q ss_pred ---------------EEecCCCCCCCCC-CCCcceEEeccccccccc-cHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 357 ---------------VVSPLGNRRLPFP-SGVFDAIHCDGCSITWHA-HGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 357 ---------------i~~~~dt~~LPFp-D~SFDlVhcs~cli~W~~-d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
.+...+....||+ .+.||+|+|..+++++.. ....++..+.+.|+|||+|++....
T Consensus 192 ~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 192 HEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred CCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence 1112222232443 589999999877777543 4578999999999999999887654
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.79 E-value=7.7e-05 Score=76.09 Aligned_cols=91 Identities=22% Similarity=0.272 Sum_probs=58.9
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc----CCCcE-EecCCCCCCCCCC-CCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER----GFPAV-VSPLGNRRLPFPS-GVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR----GL~~i-~~~~dt~~LPFpD-~SFDlVhcs 379 (689)
...+||+||||+|..++.|+.. .|++++..+ ...+.|+++ |+..+ +...|. ..-|+. ..||.|++.
T Consensus 72 ~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~-----~L~~~A~~~L~~lg~~nV~v~~gDG-~~G~~~~aPyD~I~Vt 145 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAVLARLVGRVVSIERIE-----ELAEQARRNLETLGYENVTVRHGDG-SKGWPEEAPYDRIIVT 145 (209)
T ss_pred CCCeEEEECCCchHHHHHHHHHhCeEEEEEEcH-----HHHHHHHHHHHHcCCCceEEEECCc-ccCCCCCCCcCEEEEe
Confidence 4579999999999988877753 688888765 344555443 65433 333332 333544 789999875
Q ss_pred cccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 380 GCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 380 ~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
... + .+=.-+.+-|+|||++++-.-
T Consensus 146 aaa-~------~vP~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 146 AAA-P------EVPEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred ecc-C------CCCHHHHHhcccCCEEEEEEc
Confidence 432 2 111245567999999998654
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=5.6e-05 Score=78.46 Aligned_cols=141 Identities=13% Similarity=0.123 Sum_probs=83.7
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcCC---eEEEEcCCcccHHHHHHHHHH----cCCCc---EEe
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAKE---VLTLTVGLKDDLVDLAQVALE----RGFPA---VVS 359 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~~---V~gmDIsp~D~seamlq~A~e----RGL~~---i~~ 359 (689)
+.|.+.+.+.-. .+.. ...+|||.+.|-|.+|+.-+.++ |+++..+|. .++.|.- +++.. .+.
T Consensus 118 dP~~Dt~~Kv~~-V~~~-~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~-----VLeLa~lNPwSr~l~~~~i~ii 190 (287)
T COG2521 118 DPLEDTLAKVEL-VKVK-RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPN-----VLELAKLNPWSRELFEIAIKII 190 (287)
T ss_pred CcHHHHHhhhhe-eccc-cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCC-----eEEeeccCCCCccccccccEEe
Confidence 445555554311 1221 45789999999999988777654 677776663 3444432 22211 111
Q ss_pred cCCCCCC--CCCCCCcceEEec--cccccccccHHHHHHHHHhccCCCcEEEEEc-CCC--c--hhHHHHHHHHHHhcce
Q 044932 360 PLGNRRL--PFPSGVFDAIHCD--GCSITWHAHGGKLLLEMNRILRPSGYFILST-KHD--S--IEEEEALTTLTASICW 430 (689)
Q Consensus 360 ~~dt~~L--PFpD~SFDlVhcs--~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd-p~~--~--le~~~~ie~La~~l~W 430 (689)
..|+..+ .|+|.|||+|+-- +.++.-.-.-..+..|++|||||||.++--. .|. + +.-+..+.+.+.+.+|
T Consensus 191 lGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF 270 (287)
T COG2521 191 LGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGF 270 (287)
T ss_pred cccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCc
Confidence 1222111 3889999998631 2111111133578999999999999887654 232 1 1234567788899999
Q ss_pred eEEEeec
Q 044932 431 NILAHKT 437 (689)
Q Consensus 431 ~~v~~~~ 437 (689)
.++....
T Consensus 271 ~~v~~~~ 277 (287)
T COG2521 271 EVVKKVR 277 (287)
T ss_pred eeeeeeh
Confidence 9776543
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.77 E-value=4.4e-06 Score=70.30 Aligned_cols=89 Identities=25% Similarity=0.403 Sum_probs=59.5
Q ss_pred eecCCcchhHHHHhccC-CceEEEeccCCCC-Cchhhhhc----cccchhhccccCCCCCCCccchhhccccccccccCC
Q 044932 551 MDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-DTLPVIYD----RGLVGIYHDWCESFGTYPRSYDLLHADHLFSRLKSR 624 (689)
Q Consensus 551 mDMna~~GgFAAal~~~-~vWVMNvvp~~~~-~tL~vI~~----RGLig~yhdwce~f~typrTyDLlHa~~lfs~~~~~ 624 (689)
||+++|.|-+++.|.+. +.= |+-++.. ..+...-+ .++- +.+.=-+.++..+.+||+|++.++|..+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~---v~~~D~~~~~~~~~~~~~~~~~~~-~~~~d~~~l~~~~~sfD~v~~~~~~~~~--- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGAS---VTGIDISEEMLEQARKRLKNEGVS-FRQGDAEDLPFPDNSFDVVFSNSVLHHL--- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCE---EEEEES-HHHHHHHHHHTTTSTEE-EEESBTTSSSS-TT-EEEEEEESHGGGS---
T ss_pred CEecCcCCHHHHHHHhccCCE---EEEEeCCHHHHHHHHhcccccCch-heeehHHhCccccccccccccccceeec---
Confidence 79999999999999887 432 2222221 22222222 2222 3333356667778999999999999987
Q ss_pred cCCccceeeeeccccccCcEEEE
Q 044932 625 CRQPVSIVVEMDRILRPGGWAIV 647 (689)
Q Consensus 625 c~~~~~illEmDRILRP~G~~ii 647 (689)
.+ ...+|-||-|+|||||+++|
T Consensus 74 ~~-~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 ED-PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SH-HHHHHHHHHHHEEEEEEEEE
T ss_pred cC-HHHHHHHHHHHcCcCeEEeC
Confidence 34 46789999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.1e-05 Score=78.00 Aligned_cols=100 Identities=21% Similarity=0.320 Sum_probs=57.5
Q ss_pred CCCeEEEECCccch----hHHHhhc---------CCeEEEEcCCcccHHHHHHHHHHc--------CCCc----------
Q 044932 308 NIRVVLEIGSADLS----FVASLLA---------KEVLTLTVGLKDDLVDLAQVALER--------GFPA---------- 356 (689)
Q Consensus 308 ~~R~VLDVGCGtGs----faa~La~---------~~V~gmDIsp~D~seamlq~A~eR--------GL~~---------- 356 (689)
..-+|+-+||++|. +|..|.+ ..|+|.|+++ .+++.|++- +++.
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~-----~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~ 105 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISP-----SALEKARAGIYPERSLRGLPPAYLRRYFTER 105 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-H-----HHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCH-----HHHHHHHhCCCCHHHHhhhHHHHHHHhcccc
Confidence 45689999999994 4444443 1478888875 466666541 2221
Q ss_pred ---------------EEecCCCCCCCCCCCCcceEEeccccccccc-cHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 357 ---------------VVSPLGNRRLPFPSGVFDAIHCDGCSITWHA-HGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 357 ---------------i~~~~dt~~LPFpD~SFDlVhcs~cli~W~~-d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
.+...+....+.+.+.||+|+|-.++|.+.. ....++.-+++.|+|||+|++....
T Consensus 106 ~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 106 DGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp -CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred CCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCc
Confidence 0111222222334589999999888887653 3468999999999999999998754
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=1.4e-05 Score=84.44 Aligned_cols=96 Identities=21% Similarity=0.209 Sum_probs=66.4
Q ss_pred CCeEEEECCccchhHHHhhcCCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecccccccc--
Q 044932 309 IRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWH-- 386 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~-- 386 (689)
...+||+|||.|....---...+++.|++- ..+..|...|.. .....|+..+||++.+||.++...+..||.
T Consensus 46 gsv~~d~gCGngky~~~~p~~~~ig~D~c~-----~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVNPLCLIIGCDLCT-----GLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred cceeeecccCCcccCcCCCcceeeecchhh-----hhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 467999999999643221112367777653 345555544432 344567889999999999998765544433
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEc
Q 044932 387 AHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 387 ~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
.....+|.|+.|+|||||...|..
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEE
Confidence 245789999999999999876654
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00038 Score=70.25 Aligned_cols=131 Identities=11% Similarity=0.090 Sum_probs=72.3
Q ss_pred CCeEEEECCccchhHHHhhc---CCeEEEEcCCcccHHHHHHHHHHcCCC-cEEecCCCC-CCCCCCCCcceEEeccccc
Q 044932 309 IRVVLEIGSADLSFVASLLA---KEVLTLTVGLKDDLVDLAQVALERGFP-AVVSPLGNR-RLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~---~~V~gmDIsp~D~seamlq~A~eRGL~-~i~~~~dt~-~LPFpD~SFDlVhcs~cli 383 (689)
..+|||+|||+|.++..++. ..|+++++++.-. ....+-+...++. ..+...|.. .++....+||+|++.-
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~-~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DP--- 129 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVA-QQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDP--- 129 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHH-HHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECC---
Confidence 35899999999999975432 3588999876421 1111122223443 223333322 2332345799998752
Q ss_pred ccccc-HHHHHHHHH--hccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccccCceeEEEEEeCC
Q 044932 384 TWHAH-GGKLLLEMN--RILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEISEMGVKIYQKPE 452 (689)
Q Consensus 384 ~W~~d-~~~aL~EI~--RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqKp~ 452 (689)
++... ...++.-+. .+|+|+|++++......- +..+. -.|+.+..+. .|...+.+|+++.
T Consensus 130 Py~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~~-----~~~~~--~~~~~~~~k~--yG~s~~~~~~~~~ 192 (199)
T PRK10909 130 PFRKGLLEETINLLEDNGWLADEALIYVESEVENG-----LPTVP--ANWQLHREKV--AGQVAYRLYIREA 192 (199)
T ss_pred CCCCChHHHHHHHHHHCCCcCCCcEEEEEecCCCC-----cccCC--CccEEEEEec--CCCEEEEEEEECC
Confidence 22221 223344333 358999999998765311 11111 2476654443 4666788898753
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00022 Score=78.85 Aligned_cols=99 Identities=17% Similarity=0.122 Sum_probs=59.4
Q ss_pred CCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHH----HcCCC---cEEecCCCCCC-C-C--CCCCcc
Q 044932 309 IRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVAL----ERGFP---AVVSPLGNRRL-P-F--PSGVFD 374 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~----eRGL~---~i~~~~dt~~L-P-F--pD~SFD 374 (689)
.++|||+|||+|.|+.+++.. .|+++|+++. +++.|. ..|+. ..+...|.... . + ..++||
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~-----al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fD 295 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQE-----ALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFD 295 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHH-----HHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCC
Confidence 478999999999988654422 5899998874 344433 33553 23333443221 1 1 246899
Q ss_pred eEEeccccc-ccc-------ccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 375 AIHCDGCSI-TWH-------AHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 375 lVhcs~cli-~W~-------~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+|++.--.+ .-. .....++.-..++|+|||+|++..-.
T Consensus 296 lVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred EEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 999752110 000 01223445577999999999986543
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00033 Score=77.47 Aligned_cols=113 Identities=15% Similarity=0.177 Sum_probs=69.0
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH----cCCCc-EEecCCCC----CCCCCCCCcceEE
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE----RGFPA-VVSPLGNR----RLPFPSGVFDAIH 377 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e----RGL~~-i~~~~dt~----~LPFpD~SFDlVh 377 (689)
..+|||+|||+|.++..|+.. .|+++|+++. +++.|.+ .++.. .+...+.. .+++.+++||+|+
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~-----av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPE-----SVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHH-----HHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 468999999999999988753 5899998864 4444433 35543 23333432 2345567899998
Q ss_pred eccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEE
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v 433 (689)
+.--. ..-...++..+.+ |+|++.++++..+..+.. .+..+ ...+|.+.
T Consensus 368 ~dPPr---~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlar--d~~~l-~~~gy~~~ 416 (431)
T TIGR00479 368 LDPPR---KGCAAEVLRTIIE-LKPERIVYVSCNPATLAR--DLEFL-CKEGYGIT 416 (431)
T ss_pred ECcCC---CCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHH--HHHHH-HHCCeeEE
Confidence 64211 0012356666555 899999999876644321 13333 34467553
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00037 Score=74.40 Aligned_cols=141 Identities=15% Similarity=0.199 Sum_probs=92.6
Q ss_pred CCCeEEEECCccchhHHH-hhc-----CCeEEEEcCCcccHHHHHHHHHHcCCCcE--EecCCC---CCCCCCCCCcceE
Q 044932 308 NIRVVLEIGSADLSFVAS-LLA-----KEVLTLTVGLKDDLVDLAQVALERGFPAV--VSPLGN---RRLPFPSGVFDAI 376 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~-La~-----~~V~gmDIsp~D~seamlq~A~eRGL~~i--~~~~dt---~~LPFpD~SFDlV 376 (689)
..-+||||.||.|..-.- |.. ..|.-.|++|..+ +.-.+.+.++|+..+ +...|+ ..+.--+-..+++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv-~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINV-EKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHH-HHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 456899999999985432 222 2467778887543 344566788998765 333332 2222113456888
Q ss_pred Eecccccccccc---HHHHHHHHHhccCCCcEEEEEcCC--Cch--------------------hHHHHHHHHHHhccee
Q 044932 377 HCDGCSITWHAH---GGKLLLEMNRILRPSGYFILSTKH--DSI--------------------EEEEALTTLTASICWN 431 (689)
Q Consensus 377 hcs~cli~W~~d---~~~aL~EI~RVLRPGG~fVIsdp~--~~l--------------------e~~~~ie~La~~l~W~ 431 (689)
+.+... ...+| ....|.-+.++|.|||++|.+..| +.+ ..+.+|.+|+...+|.
T Consensus 214 iVsGL~-ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~ 292 (311)
T PF12147_consen 214 IVSGLY-ELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFE 292 (311)
T ss_pred EEecch-hhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCc
Confidence 876533 32233 245788999999999999999743 111 1356899999999999
Q ss_pred EEEeeccccCceeEEEEEe
Q 044932 432 ILAHKTDEISEMGVKIYQK 450 (689)
Q Consensus 432 ~v~~~~~~~g~~~i~IwqK 450 (689)
++.+.-+..|...|.+.+|
T Consensus 293 K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 293 KIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred hhhheeccCCceEEEeecC
Confidence 8887777767666766654
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=7.1e-05 Score=81.97 Aligned_cols=99 Identities=18% Similarity=0.227 Sum_probs=67.5
Q ss_pred CeEEEECCccchhHHHhh---cCCeEEEEcCCcccHHHHHHHHHHcCCCc--EEecCCCCCCCCCCCCcceEEecccccc
Q 044932 310 RVVLEIGSADLSFVASLL---AKEVLTLTVGLKDDLVDLAQVALERGFPA--VVSPLGNRRLPFPSGVFDAIHCDGCSIT 384 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La---~~~V~gmDIsp~D~seamlq~A~eRGL~~--i~~~~dt~~LPFpD~SFDlVhcs~cli~ 384 (689)
..++|+|||.|....+.. ..++++++.++......+.. +...++.. .+...+....||+|++||.+-+....-
T Consensus 112 ~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~-~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~- 189 (364)
T KOG1269|consen 112 SKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANEL-AKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVC- 189 (364)
T ss_pred ccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHH-HHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecc-
Confidence 378999999998665544 45788888887533222211 11122211 123334567899999999998764332
Q ss_pred ccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 385 WHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 385 W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
+.+++..++.|++|||+|||+++..+
T Consensus 190 ~~~~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 190 HAPDLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred cCCcHHHHHHHHhcccCCCceEEeHH
Confidence 25588899999999999999999864
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00037 Score=75.82 Aligned_cols=116 Identities=18% Similarity=0.248 Sum_probs=80.9
Q ss_pred CCCeEEEECCccchhH--HHhhcCCeEEEEcCCcccHHHHHHHHHHc----CCCcE--EecCCCCCCCCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFV--ASLLAKEVLTLTVGLKDDLVDLAQVALER----GFPAV--VSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfa--a~La~~~V~gmDIsp~D~seamlq~A~eR----GL~~i--~~~~dt~~LPFpD~SFDlVhcs 379 (689)
.+..|||==||||+|. +.|.+..++|.|++ ..|++-|... ++... +...|+..|||++++||.|.|-
T Consensus 197 ~G~~vlDPFcGTGgiLiEagl~G~~viG~Did-----~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatD 271 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAGLMGARVIGSDID-----ERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATD 271 (347)
T ss_pred cCCEeecCcCCccHHHHhhhhcCceEeecchH-----HHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEec
Confidence 3468999999999976 55777888999876 4576666543 33332 3344889999999999999873
Q ss_pred c-----cccccc---ccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEe
Q 044932 380 G-----CSITWH---AHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 380 ~-----cli~W~---~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~ 435 (689)
- ..+.-. .--..+|..+.++|++||++++..+-..+ ..+..++|+++..
T Consensus 272 PPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~-------~~~~~~~f~v~~~ 328 (347)
T COG1041 272 PPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPR-------HELEELGFKVLGR 328 (347)
T ss_pred CCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcch-------hhHhhcCceEEEE
Confidence 1 111100 11357899999999999999999883322 2356678877654
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00017 Score=78.15 Aligned_cols=117 Identities=15% Similarity=0.175 Sum_probs=70.8
Q ss_pred ccchhH--HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhc---CCeEEEEcCCcccHHHHHHHHHHcCCCcEE
Q 044932 284 EFKGGV--LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA---KEVLTLTVGLKDDLVDLAQVALERGFPAVV 358 (689)
Q Consensus 284 ~F~~ga--~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~---~~V~gmDIsp~D~seamlq~A~eRGL~~i~ 358 (689)
|..+.+ .+|-+.+.+--..+ ..++|||||||||.++..-+. +.|++++.+. +..-..+.+...++..++
T Consensus 38 ML~D~VRt~aYr~~i~~n~~lf----~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~--ia~~a~~iv~~N~~~~ii 111 (346)
T KOG1499|consen 38 MLKDSVRTLAYRNAILQNKHLF----KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS--IADFARKIVKDNGLEDVI 111 (346)
T ss_pred HHhhhhhHHHHHHHHhcchhhc----CCCEEEEcCCCccHHHHHHHHhCcceEEEEechH--HHHHHHHHHHhcCccceE
Confidence 344444 46666554321112 357999999999986654443 4588888764 334455566667776655
Q ss_pred ecCC--CC--CCCCCCCCcceEEec---cccccccccHHHHHHHHHhccCCCcEEEEE
Q 044932 359 SPLG--NR--RLPFPSGVFDAIHCD---GCSITWHAHGGKLLLEMNRILRPSGYFILS 409 (689)
Q Consensus 359 ~~~d--t~--~LPFpD~SFDlVhcs---~cli~W~~d~~~aL~EI~RVLRPGG~fVIs 409 (689)
.+.. .+ .|| -..+|+|++- .|++. ..-...+|.-=++-|+|||.++=+
T Consensus 112 ~vi~gkvEdi~LP--~eKVDiIvSEWMGy~Ll~-EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 112 TVIKGKVEDIELP--VEKVDIIVSEWMGYFLLY-ESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred EEeecceEEEecC--ccceeEEeehhhhHHHHH-hhhhhhhhhhhhhccCCCceEccc
Confidence 4322 22 456 5799999874 23322 112235566667999999988643
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00024 Score=69.54 Aligned_cols=102 Identities=21% Similarity=0.228 Sum_probs=57.4
Q ss_pred CCCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHcCC---C--cEEecCC-CCCC--C-CCCCCcc
Q 044932 308 NIRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALERGF---P--AVVSPLG-NRRL--P-FPSGVFD 374 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eRGL---~--~i~~~~d-t~~L--P-FpD~SFD 374 (689)
..++||++|||+|..+..++. ..|+..|..+ . ...++...+++. . ..+..++ ...+ . +....||
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~--~-l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE--V-LELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S---H-HHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch--h-hHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 467999999999965544433 3688899876 2 233333333321 1 1122221 0111 1 2346899
Q ss_pred eEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 375 AIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 375 lVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
+|+++-|++. ......++.=+.++|+|+|.++++.+..
T Consensus 122 ~IlasDv~Y~-~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 122 VILASDVLYD-EELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEEES--S--GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEEecccch-HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 9999988764 5556788888999999999988887653
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.001 Score=69.79 Aligned_cols=111 Identities=21% Similarity=0.149 Sum_probs=74.3
Q ss_pred CCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHc----CCCc--EEecCCCCCCCCCCCCcceE
Q 044932 308 NIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALER----GFPA--VVSPLGNRRLPFPSGVFDAI 376 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eR----GL~~--i~~~~dt~~LPFpD~SFDlV 376 (689)
.+.+|||.|.|+|.++++|+. -.|++.++-+ ..++.|++. |+.. .+...|....-++ ..||+|
T Consensus 94 pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~-----d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~-~~vDav 167 (256)
T COG2519 94 PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIRE-----DFAKTARENLSEFGLGDRVTLKLGDVREGIDE-EDVDAV 167 (256)
T ss_pred CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecH-----HHHHHHHHHHHHhccccceEEEeccccccccc-cccCEE
Confidence 457999999999999999983 2488888754 455555543 4433 2223444333355 499999
Q ss_pred EeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeE
Q 044932 377 HCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNI 432 (689)
Q Consensus 377 hcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~ 432 (689)
+.- .++|-.+|.-+..+|+|||.+++-.|-. +.-....+.++..||..
T Consensus 168 ~LD------mp~PW~~le~~~~~Lkpgg~~~~y~P~v--eQv~kt~~~l~~~g~~~ 215 (256)
T COG2519 168 FLD------LPDPWNVLEHVSDALKPGGVVVVYSPTV--EQVEKTVEALRERGFVD 215 (256)
T ss_pred EEc------CCChHHHHHHHHHHhCCCcEEEEEcCCH--HHHHHHHHHHHhcCccc
Confidence 753 2367799999999999999999998852 22222333444457754
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0014 Score=71.65 Aligned_cols=116 Identities=9% Similarity=0.073 Sum_probs=68.1
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCC-cEEecCCCCCC-CCCCCCcceEEecccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFP-AVVSPLGNRRL-PFPSGVFDAIHCDGCSIT 384 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~-~i~~~~dt~~L-PFpD~SFDlVhcs~cli~ 384 (689)
..+|||+|||+|.++..++.. .|+++|+++... +.+.+.+...++. ..+...+...+ +-....||+|++.- +
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av-~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DP---P 309 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAI-ACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNP---P 309 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHH-HHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECC---C
Confidence 468999999999999888754 589999987422 1222223334553 23444443322 11124699998741 1
Q ss_pred ccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEE
Q 044932 385 WHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 385 W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~ 434 (689)
...-...++..+. -++|++.++++..+..+.. .+..| .+|++..
T Consensus 310 r~G~~~~~l~~l~-~~~p~~ivyvsc~p~TlaR--Dl~~L---~gy~l~~ 353 (374)
T TIGR02085 310 RRGIGKELCDYLS-QMAPKFILYSSCNAQTMAK--DIAEL---SGYQIER 353 (374)
T ss_pred CCCCcHHHHHHHH-hcCCCeEEEEEeCHHHHHH--HHHHh---cCceEEE
Confidence 1111124444444 4799999999987765432 24444 4677643
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00076 Score=82.65 Aligned_cols=116 Identities=16% Similarity=0.118 Sum_probs=70.7
Q ss_pred CCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHc----CC-----------------CcEEecCCC
Q 044932 309 IRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALER----GF-----------------PAVVSPLGN 363 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eR----GL-----------------~~i~~~~dt 363 (689)
..+|||+|||+|.++..|+. ..|+++|+++. +++.|.+. ++ ...+...|.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~-----Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl 193 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPR-----AVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDL 193 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHH-----HHHHHHHHHHHcCcccccccccccccccccccEEEEECch
Confidence 35899999999998887764 25999999874 44444321 21 122333332
Q ss_pred CCCCCCC--CCcceEEecccccc-------------------------cc--------ccH----HHHHHHHHhccCCCc
Q 044932 364 RRLPFPS--GVFDAIHCDGCSIT-------------------------WH--------AHG----GKLLLEMNRILRPSG 404 (689)
Q Consensus 364 ~~LPFpD--~SFDlVhcs~cli~-------------------------W~--------~d~----~~aL~EI~RVLRPGG 404 (689)
.. ++.+ ..||+|++.-=.|. +. .++ ..++.+..++|+|||
T Consensus 194 ~~-~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG 272 (1082)
T PLN02672 194 LG-YCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMG 272 (1082)
T ss_pred hh-hccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCC
Confidence 21 2332 36999998411000 00 111 357788889999999
Q ss_pred EEEEEcCCCchhHHHHHH-HHHHhcceeEE
Q 044932 405 YFILSTKHDSIEEEEALT-TLTASICWNIL 433 (689)
Q Consensus 405 ~fVIsdp~~~le~~~~ie-~La~~l~W~~v 433 (689)
++++-.-...- +.+. ++++..+|..+
T Consensus 273 ~l~lEiG~~q~---~~v~~~l~~~~gf~~~ 299 (1082)
T PLN02672 273 IMIFNMGGRPG---QAVCERLFERRGFRIT 299 (1082)
T ss_pred EEEEEECccHH---HHHHHHHHHHCCCCee
Confidence 99987654322 3466 58887777653
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00041 Score=66.49 Aligned_cols=82 Identities=17% Similarity=0.159 Sum_probs=54.5
Q ss_pred CCeEEEECCccch-hHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccccc
Q 044932 309 IRVVLEIGSADLS-FVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITW 385 (689)
Q Consensus 309 ~R~VLDVGCGtGs-faa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W 385 (689)
.++|||||||+|. ++..|.+. .|+++|++| ..++.|.++++.+....+-.-.+-+ -..+|+|.+.+.-
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~-----~aV~~a~~~~~~~v~dDlf~p~~~~-y~~a~liysirpp--- 87 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGFDVIVIDINE-----KAVEKAKKLGLNAFVDDLFNPNLEI-YKNAKLIYSIRPP--- 87 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHhCCeEEECcCCCCCHHH-HhcCCEEEEeCCC---
Confidence 4789999999995 88888765 599999886 4678888888776665432222222 2579999877632
Q ss_pred cccHHHHHHHHHhcc
Q 044932 386 HAHGGKLLLEMNRIL 400 (689)
Q Consensus 386 ~~d~~~aL~EI~RVL 400 (689)
.+....+.++.+-+
T Consensus 88 -~el~~~~~~la~~~ 101 (134)
T PRK04148 88 -RDLQPFILELAKKI 101 (134)
T ss_pred -HHHHHHHHHHHHHc
Confidence 23334555555543
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0011 Score=68.19 Aligned_cols=128 Identities=20% Similarity=0.315 Sum_probs=84.2
Q ss_pred CeEEEECCccchhHHHhhc-CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCC-CCCCCcceEEeccccccccc
Q 044932 310 RVVLEIGSADLSFVASLLA-KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLP-FPSGVFDAIHCDGCSITWHA 387 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~-~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LP-FpD~SFDlVhcs~cli~W~~ 387 (689)
-++|||||=.......-.. ..|+.+|+.+... ++ ....+=...|| -+++.||+|.|+.+ +.+.+
T Consensus 53 lrlLEVGals~~N~~s~~~~fdvt~IDLns~~~-----------~I--~qqDFm~rplp~~~~e~FdvIs~SLV-LNfVP 118 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWFDVTRIDLNSQHP-----------GI--LQQDFMERPLPKNESEKFDVISLSLV-LNFVP 118 (219)
T ss_pred ceEEeecccCCCCcccccCceeeEEeecCCCCC-----------Cc--eeeccccCCCCCCcccceeEEEEEEE-EeeCC
Confidence 5899999985543322211 2489999987421 11 11112112233 24789999999864 35555
Q ss_pred cH---HHHHHHHHhccCCCcE-----EEEEcCCCch-----hHHHHHHHHHHhcceeEEEeeccccCceeEEEEEeCCC
Q 044932 388 HG---GKLLLEMNRILRPSGY-----FILSTKHDSI-----EEEEALTTLTASICWNILAHKTDEISEMGVKIYQKPES 453 (689)
Q Consensus 388 d~---~~aL~EI~RVLRPGG~-----fVIsdp~~~l-----e~~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqKp~~ 453 (689)
++ +..|.-+++.|+|+|. |+|..|.... ...+.+..++.++||..+..+. .......+|+|...
T Consensus 119 ~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~--~~Kl~y~l~r~~~~ 195 (219)
T PF11968_consen 119 DPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYKK--SKKLAYWLFRKSGK 195 (219)
T ss_pred CHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEEe--cCeEEEEEEeecCC
Confidence 44 7899999999999999 8888776433 1345688999999999886643 34555667887543
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0013 Score=69.96 Aligned_cols=97 Identities=20% Similarity=0.234 Sum_probs=60.1
Q ss_pred CeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHc----CCCcEEec----CC---CCCCCCCCCCcc
Q 044932 310 RVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALER----GFPAVVSP----LG---NRRLPFPSGVFD 374 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eR----GL~~i~~~----~d---t~~LPFpD~SFD 374 (689)
..+||+|||+|..+..|+. ..|+++|+++. ++..|.+. ++.+.+.+ +. ....|..++.+|
T Consensus 150 ~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~-----Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~d 224 (328)
T KOG2904|consen 150 THILDLGTGSGAISLSLLHGLPQCTVTAIDVSKA-----AIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKID 224 (328)
T ss_pred ceEEEecCCccHHHHHHHhcCCCceEEEEeccHH-----HHHHHHHHHHHHhhcCceEEEecccccccccccccccCcee
Confidence 4799999999988777663 35889998763 44444432 34333221 11 133456689999
Q ss_pred eEEeccccccc------------ccc-------------HHHHHHHHHhccCCCcEEEEEcC
Q 044932 375 AIHCDGCSITW------------HAH-------------GGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 375 lVhcs~cli~W------------~~d-------------~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
+++|.--.+.- .++ .-.++.=.-|.|+|||.+.+..-
T Consensus 225 llvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 225 LLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred EEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 99985211110 000 11345567799999999999864
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.001 Score=69.58 Aligned_cols=113 Identities=21% Similarity=0.188 Sum_probs=71.4
Q ss_pred CCCeEEEECCccchhHHHhhc----C-CeEEEEcCCcccHHHHHHHHHH----cCCCc--EEecCCCCCCCCC---CCCc
Q 044932 308 NIRVVLEIGSADLSFVASLLA----K-EVLTLTVGLKDDLVDLAQVALE----RGFPA--VVSPLGNRRLPFP---SGVF 373 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~----~-~V~gmDIsp~D~seamlq~A~e----RGL~~--i~~~~dt~~LPFp---D~SF 373 (689)
++.+||+.|.|+|+++.+|+. . .|++.++.. ..++.|.+ .|+.. .+...|...-.|+ +..|
T Consensus 40 pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~-----~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~ 114 (247)
T PF08704_consen 40 PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFRE-----DRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDF 114 (247)
T ss_dssp TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSH-----HHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSE
T ss_pred CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCH-----HHHHHHHHHHHHcCCCCCceeEecceecccccccccCcc
Confidence 457999999999999888874 2 488888754 34444443 36642 3333443333342 3689
Q ss_pred ceEEeccccccccccHHHHHHHHHhcc-CCCcEEEEEcCCCchhHHHHHHHHHHhcceeEE
Q 044932 374 DAIHCDGCSITWHAHGGKLLLEMNRIL-RPSGYFILSTKHDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 374 DlVhcs~cli~W~~d~~~aL~EI~RVL-RPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v 433 (689)
|+|+.- .++|-.++.-+.++| ||||++++..|- ++.....-+.++..+|..+
T Consensus 115 DavfLD------lp~Pw~~i~~~~~~L~~~gG~i~~fsP~--ieQv~~~~~~L~~~gf~~i 167 (247)
T PF08704_consen 115 DAVFLD------LPDPWEAIPHAKRALKKPGGRICCFSPC--IEQVQKTVEALREHGFTDI 167 (247)
T ss_dssp EEEEEE------SSSGGGGHHHHHHHE-EEEEEEEEEESS--HHHHHHHHHHHHHTTEEEE
T ss_pred cEEEEe------CCCHHHHHHHHHHHHhcCCceEEEECCC--HHHHHHHHHHHHHCCCeee
Confidence 999753 235557999999999 999999999875 3333334445666788765
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00055 Score=73.96 Aligned_cols=88 Identities=14% Similarity=0.245 Sum_probs=48.9
Q ss_pred HHHHHHHHhhccc-----ccCCCCCCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHc-CCCcEEe
Q 044932 290 LHYLESIEEMVPD-----IEWGKNIRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALER-GFPAVVS 359 (689)
Q Consensus 290 ~~Yid~L~~~Lp~-----l~~G~~~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eR-GL~~i~~ 359 (689)
-.|+..|..++.. +..+ ...+|||||||+|.+...|+. ..++++|+++.....+ ...+... ++...+.
T Consensus 92 ~~Yi~~l~dll~~~~~~~~p~~-~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A-~~Nv~~Np~l~~~I~ 169 (321)
T PRK11727 92 ADYIHHLADLLAEDNGGVIPRG-ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASA-QAIISANPGLNGAIR 169 (321)
T ss_pred HHHHHHHHHHhcccccccCCCC-CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHH-HHHHHhccCCcCcEE
Confidence 4677767666531 1112 356899999999976655543 3589999987422211 1222223 3443221
Q ss_pred ---cCCCCCC----CCCCCCcceEEec
Q 044932 360 ---PLGNRRL----PFPSGVFDAIHCD 379 (689)
Q Consensus 360 ---~~dt~~L----PFpD~SFDlVhcs 379 (689)
..+...+ -.++..||+|+|.
T Consensus 170 ~~~~~~~~~i~~~i~~~~~~fDlivcN 196 (321)
T PRK11727 170 LRLQKDSKAIFKGIIHKNERFDATLCN 196 (321)
T ss_pred EEEccchhhhhhcccccCCceEEEEeC
Confidence 1111111 1346799999986
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00037 Score=67.67 Aligned_cols=102 Identities=23% Similarity=0.265 Sum_probs=52.6
Q ss_pred CCCeEEEECCccchhHHHhhcCC-----eEEEEcCCcccHHHHHHHHHHcCCCcEEecCC-C-CCCCCCCCCcceEEecc
Q 044932 308 NIRVVLEIGSADLSFVASLLAKE-----VLTLTVGLKDDLVDLAQVALERGFPAVVSPLG-N-RRLPFPSGVFDAIHCDG 380 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~~-----V~gmDIsp~D~seamlq~A~eRGL~~i~~~~d-t-~~LPFpD~SFDlVhcs~ 380 (689)
...+|||+||++|+|+.+++.+. |+|+|+.+.... ..+... +|-........ . ..++-....||+|+|-.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~-~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~ 99 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL-QNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVLSDM 99 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS--TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEEE--
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccccc-cceeee--ecccchhhHHHhhhhhccccccCcceecccc
Confidence 46899999999999999888653 889999874211 000000 00000000000 0 11111127999999853
Q ss_pred c---cccccccH-------HHHHHHHHhccCCCcEEEEEcCC
Q 044932 381 C---SITWHAHG-------GKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 381 c---li~W~~d~-------~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+ .-++..+. ..+|.-+...|+|||.|++-.-.
T Consensus 100 ~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 100 APNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp -----SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred ccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 1 11111111 23344455789999998886543
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00048 Score=71.97 Aligned_cols=67 Identities=18% Similarity=0.103 Sum_probs=45.8
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcC--CCcEEecCCCCCCCCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERG--FPAVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRG--L~~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
...+|||+|||+|.++..|+.+ .|+++|+++ .|++.+.++. -...+...|...+++++-.+|.|++.
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~-----~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~N 112 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAAKVTAVEIDR-----DLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVAN 112 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCCcEEEEECCH-----HHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEe
Confidence 3468999999999999888864 589999886 4566655432 12334455666777764335777654
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00092 Score=70.98 Aligned_cols=97 Identities=9% Similarity=0.003 Sum_probs=62.0
Q ss_pred CCeEEEECCccchhHHHhhc----C-CeEEEEcCCcccHHHHHHHHHHcCCCc--EEecCCC-CCCC-C----CCCCcce
Q 044932 309 IRVVLEIGSADLSFVASLLA----K-EVLTLTVGLKDDLVDLAQVALERGFPA--VVSPLGN-RRLP-F----PSGVFDA 375 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~-~V~gmDIsp~D~seamlq~A~eRGL~~--i~~~~dt-~~LP-F----pD~SFDl 375 (689)
.++|||||+|+|..+.+++. . .|+++|.++... ....+...+.|+.. .+...++ .-|+ + .+++||+
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~-~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSL-EVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 57999999999998877764 2 388999887421 22223333446642 2222332 1122 1 1368999
Q ss_pred EEeccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 376 IHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 376 Vhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
|+.-. +-.+-..++..+.+.|+|||.+++..
T Consensus 198 VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 198 AFVDA----DKRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred EEECC----CHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 98642 12234578889999999999999874
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0013 Score=67.76 Aligned_cols=64 Identities=22% Similarity=0.215 Sum_probs=43.5
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcC---CCcEEecCCCCCCCCCCCCcc---eEEe
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERG---FPAVVSPLGNRRLPFPSGVFD---AIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRG---L~~i~~~~dt~~LPFpD~SFD---lVhc 378 (689)
+..+|||+|||+|.++..|+.. .|+++|+++ .+++.+.++- -...+...|...+|++ +|| +|++
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~-----~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvs 100 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDP-----RLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVS 100 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCH-----HHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEE
Confidence 4578999999999999988864 488999876 3555554431 1233445566677766 566 5554
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0012 Score=68.51 Aligned_cols=65 Identities=17% Similarity=0.247 Sum_probs=46.0
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcC--CC-cEEecCCCCCCCCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERG--FP-AVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRG--L~-~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
...+|||||||+|.++..|+.. .|+++|+++ .+++.+.++- .. ..+...|...++++ .||.|+++
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~-----~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~Vv~N 98 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRAKKVYAIELDP-----RLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNKVVSN 98 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhCCEEEEEECCH-----HHHHHHHHHhccCCCEEEEEeccccCCch--hceEEEEc
Confidence 3578999999999999888865 589999876 4555555431 12 23445566777776 48999875
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00072 Score=67.56 Aligned_cols=146 Identities=18% Similarity=0.235 Sum_probs=93.4
Q ss_pred HHHHHHHHhhhcccCCCCCCeeEEeecCCcchhHHHHhcc-CCceEEEeccCCCC-Cch----hhhhcccc--chhhccc
Q 044932 527 HWKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQ-QKIWVMNVVPVHAP-DTL----PVIYDRGL--VGIYHDW 598 (689)
Q Consensus 527 ~W~~~v~~~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~-~~vWVMNvvp~~~~-~tL----~vI~~RGL--ig~yhdw 598 (689)
.|++++-.+..-.--++. =..|+|+++|+|.++.+|.. .+- ..|+-++.. .-+ ..+-..|+ |-+++.-
T Consensus 28 ~~~~~~~d~l~l~~~l~~--g~~VLDiGcGtG~~al~la~~~~~--~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d 103 (187)
T PRK00107 28 LWERHILDSLAIAPYLPG--GERVLDVGSGAGFPGIPLAIARPE--LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGR 103 (187)
T ss_pred HHHHHHHHHHHHHhhcCC--CCeEEEEcCCCCHHHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEecc
Confidence 899888532211111222 24699999999998887753 221 235555442 211 12223343 4445555
Q ss_pred cCCCCCCCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeCchhhHHHHHHHHhhcceeEEEee--c---
Q 044932 599 CESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGILRSLHWEIRMTY--A--- 673 (689)
Q Consensus 599 ce~f~typrTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~~~l~~v~~i~~~lrW~~~~~~--~--- 673 (689)
.+.+.. +.+||+|-+..+ .. +.+++-++-|+|||||.+++-+.......+..++..+.|...... .
T Consensus 104 ~~~~~~-~~~fDlV~~~~~-------~~-~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 174 (187)
T PRK00107 104 AEEFGQ-EEKFDVVTSRAV-------AS-LSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPG 174 (187)
T ss_pred HhhCCC-CCCccEEEEccc-------cC-HHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCC
Confidence 555655 679999988642 23 367788899999999999999988999999999999999865432 1
Q ss_pred -CCCceEEEEEec
Q 044932 674 -QDKEGILCAQKT 685 (689)
Q Consensus 674 -~~~E~iL~~~K~ 685 (689)
+++-.+.|.+|+
T Consensus 175 ~~~~~~~~~~~~~ 187 (187)
T PRK00107 175 LDGERHLVIIRKK 187 (187)
T ss_pred CCCcEEEEEEecC
Confidence 223446666664
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0034 Score=71.08 Aligned_cols=119 Identities=21% Similarity=0.283 Sum_probs=71.3
Q ss_pred CCCeEEEECCccchhHHHhhc----C-CeEEEEcCCcccHHHHHHHHHHcCCCcE-EecCCCCCCC--CCCCCcceEE--
Q 044932 308 NIRVVLEIGSADLSFVASLLA----K-EVLTLTVGLKDDLVDLAQVALERGFPAV-VSPLGNRRLP--FPSGVFDAIH-- 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~----~-~V~gmDIsp~D~seamlq~A~eRGL~~i-~~~~dt~~LP--FpD~SFDlVh-- 377 (689)
...+|||++||.|+=+.+|+. . .|++.|+++.-. ..+.+.+.+-|+..+ +...|...++ ++ ..||.|+
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~-~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~-~~fD~ILvD 190 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRV-KVLHANISRCGVSNVALTHFDGRVFGAALP-ETFDAILLD 190 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCeEEEEeCchhhhhhhch-hhcCeEEEc
Confidence 457899999999985544443 2 388899887422 222333333477653 3345554442 44 6899999
Q ss_pred --ecccc---------ccccccH--------HHHHHHHHhccCCCcEEEEEcCCCch-hHHHHHHHHHHhc
Q 044932 378 --CDGCS---------ITWHAHG--------GKLLLEMNRILRPSGYFILSTKHDSI-EEEEALTTLTASI 428 (689)
Q Consensus 378 --cs~cl---------i~W~~d~--------~~aL~EI~RVLRPGG~fVIsdp~~~l-e~~~~ie~La~~l 428 (689)
|+.-- ..|.... ..+|....+.|||||+++.++=.-.. +...-++.+++..
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~ 261 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETY 261 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHC
Confidence 55211 1222111 35788889999999999998744323 2333455555553
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0088 Score=59.94 Aligned_cols=135 Identities=22% Similarity=0.156 Sum_probs=77.1
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccchhH----HHhhcCCeEEEEcCCcccHHHHHHH-HHHcCCCcE-EecCCC
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFV----ASLLAKEVLTLTVGLKDDLVDLAQV-ALERGFPAV-VSPLGN 363 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfa----a~La~~~V~gmDIsp~D~seamlq~-A~eRGL~~i-~~~~dt 363 (689)
.+++|.|.- ++.+... ..++||||+|.|-=| ..+-+..++-+|-...- .+.++. +.+-|+..+ +.....
T Consensus 33 ~Hi~DSL~~-~~~~~~~--~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK--~~FL~~~~~~L~L~nv~v~~~R~ 107 (184)
T PF02527_consen 33 RHILDSLAL-LPFLPDF--GKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKK--VAFLKEVVRELGLSNVEVINGRA 107 (184)
T ss_dssp HHHHHHHGG-GGCS-CC--CSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHH--HHHHHHHHHHHT-SSEEEEES-H
T ss_pred HHHHHHHHh-hhhhccC--CceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchH--HHHHHHHHHHhCCCCEEEEEeee
Confidence 366666542 3333322 227999999999533 33334568888865431 233433 344577743 333333
Q ss_pred CCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEe
Q 044932 364 RRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 364 ~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~ 435 (689)
+. +....+||+|++- ..- ....++.-+.+.|+|||++++.--+...++....+.....++++....
T Consensus 108 E~-~~~~~~fd~v~aR-Av~----~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~v 173 (184)
T PF02527_consen 108 EE-PEYRESFDVVTAR-AVA----PLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLSV 173 (184)
T ss_dssp HH-TTTTT-EEEEEEE-SSS----SHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEEE
T ss_pred cc-cccCCCccEEEee-hhc----CHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEeee
Confidence 33 4456899999874 332 344778888889999999988866555555444555666666665543
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.001 Score=67.59 Aligned_cols=98 Identities=20% Similarity=0.149 Sum_probs=61.7
Q ss_pred CCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHcCCCcE--EecCCCC-CCC-----CCCCCcce
Q 044932 309 IRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALERGFPAV--VSPLGNR-RLP-----FPSGVFDA 375 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eRGL~~i--~~~~dt~-~LP-----FpD~SFDl 375 (689)
.++||+|||++|.-+.+|+. ..|++++++|... ..+.+.....|+... +...++. -|+ .+.+.||+
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~-~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERA-EIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHH-HHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHH-HHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 57999999999987777763 2489999887422 222233334465432 2223321 111 12368999
Q ss_pred EEeccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 376 IHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 376 Vhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
|+.-. +-.+-..++..+.+.|+|||.+++...
T Consensus 125 VFiDa----~K~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 125 VFIDA----DKRNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp EEEES----TGGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred EEEcc----cccchhhHHHHHhhhccCCeEEEEccc
Confidence 98642 122345788889999999999999853
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00096 Score=70.49 Aligned_cols=129 Identities=20% Similarity=0.276 Sum_probs=76.0
Q ss_pred CCcccchhHHHHHHHHHhhcccccC-C-CCCCeEEEECCccch----hHHHhhc---------CCeEEEEcCCcccHHHH
Q 044932 281 NQSEFKGGVLHYLESIEEMVPDIEW-G-KNIRVVLEIGSADLS----FVASLLA---------KEVLTLTVGLKDDLVDL 345 (689)
Q Consensus 281 ggt~F~~ga~~Yid~L~~~Lp~l~~-G-~~~R~VLDVGCGtGs----faa~La~---------~~V~gmDIsp~D~seam 345 (689)
.-|.|+....++..+-...+|.+-. . ++.-+|+-+||+||. +|..|.+ ..|+|.||+. ..
T Consensus 67 n~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~-----~~ 141 (268)
T COG1352 67 NVTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDL-----SV 141 (268)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCH-----HH
Confidence 3455666666554333334443211 1 135689999999994 4444432 1377888765 34
Q ss_pred HHHHHH---------cCCCcE-------------Ee------------cCCCCCCCCCCCCcceEEeccccccccc-cHH
Q 044932 346 AQVALE---------RGFPAV-------------VS------------PLGNRRLPFPSGVFDAIHCDGCSITWHA-HGG 390 (689)
Q Consensus 346 lq~A~e---------RGL~~i-------------~~------------~~dt~~LPFpD~SFDlVhcs~cli~W~~-d~~ 390 (689)
++.|.. ++++.. +. ..+...-++..+.||+|+|-.++|-+.. ...
T Consensus 142 L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~ 221 (268)
T COG1352 142 LEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQE 221 (268)
T ss_pred HHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHH
Confidence 554432 222211 00 1111111213478999999877776553 346
Q ss_pred HHHHHHHhccCCCcEEEEEcCCCc
Q 044932 391 KLLLEMNRILRPSGYFILSTKHDS 414 (689)
Q Consensus 391 ~aL~EI~RVLRPGG~fVIsdp~~~ 414 (689)
.++..++..|+|||+|++......
T Consensus 222 ~il~~f~~~L~~gG~LflG~sE~~ 245 (268)
T COG1352 222 RILRRFADSLKPGGLLFLGHSETI 245 (268)
T ss_pred HHHHHHHHHhCCCCEEEEccCccc
Confidence 899999999999999999876543
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0023 Score=65.99 Aligned_cols=106 Identities=21% Similarity=0.200 Sum_probs=69.1
Q ss_pred HHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHH----cCCCcEEe
Q 044932 289 VLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALE----RGFPAVVS 359 (689)
Q Consensus 289 a~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~e----RGL~~i~~ 359 (689)
...|+..|.++. +.++||+||.+.|.-+.+|+. ..++++|+++. +.+.|++ -|+...+.
T Consensus 47 ~g~~L~~L~~~~-------~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e-----~~~~A~~n~~~ag~~~~i~ 114 (219)
T COG4122 47 TGALLRLLARLS-------GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEE-----RAEIARENLAEAGVDDRIE 114 (219)
T ss_pred HHHHHHHHHHhc-------CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHH-----HHHHHHHHHHHcCCcceEE
Confidence 345666666542 367899999999987777663 23889998874 4444443 36554321
Q ss_pred --c-CCCC-CCC-CCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 360 --P-LGNR-RLP-FPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 360 --~-~dt~-~LP-FpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
. .++. .|- +..++||+|+.-. +-.+-..+|....++|||||.+++..
T Consensus 115 ~~~~gdal~~l~~~~~~~fDliFIDa----dK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 115 LLLGGDALDVLSRLLDGSFDLVFIDA----DKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred EEecCcHHHHHHhccCCCccEEEEeC----ChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 2 2321 111 4568999998531 12233489999999999999999874
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0015 Score=64.47 Aligned_cols=117 Identities=19% Similarity=0.274 Sum_probs=68.4
Q ss_pred CCCeEEEECCccchhHH--HhhcC--C---------eEEEEcCCcccHHHHHHHHHHcCCCc--EEecCCCCCCCCCCCC
Q 044932 308 NIRVVLEIGSADLSFVA--SLLAK--E---------VLTLTVGLKDDLVDLAQVALERGFPA--VVSPLGNRRLPFPSGV 372 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa--~La~~--~---------V~gmDIsp~D~seamlq~A~eRGL~~--i~~~~dt~~LPFpD~S 372 (689)
....|||-=||+|++.. ++... . ++|.|+++.... .+.+-+...|+.. .+...|...||+++++
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~-~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~ 106 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVR-GARENLKAAGVEDYIDFIQWDARELPLPDGS 106 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHH-HHHHHHHHTT-CGGEEEEE--GGGGGGTTSB
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHH-HHHHHHHhcccCCceEEEecchhhcccccCC
Confidence 35689999999999763 33332 2 569999875332 2222233345543 3446677889988899
Q ss_pred cceEEeccccccccc------c----HHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEe
Q 044932 373 FDAIHCDGCSITWHA------H----GGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 373 FDlVhcs~cli~W~~------d----~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~ 435 (689)
||+|+|.- +|-. + -..++.++.|+|+|...+++..... ++.++....|.....
T Consensus 107 ~d~IvtnP---PyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~-------~~~~~~~~~~~~~~~ 169 (179)
T PF01170_consen 107 VDAIVTNP---PYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNRE-------LEKALGLKGWRKRKL 169 (179)
T ss_dssp SCEEEEE-----STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCC-------HHHHHTSTTSEEEEE
T ss_pred CCEEEECc---chhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-------HHHHhcchhhceEEE
Confidence 99999851 2221 1 1357899999999944444444432 345566667766543
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00037 Score=71.48 Aligned_cols=121 Identities=17% Similarity=0.240 Sum_probs=81.4
Q ss_pred ecCCCCcccchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCC
Q 044932 277 TFPQNQSEFKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGF 354 (689)
Q Consensus 277 ~Fpgggt~F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL 354 (689)
.|-|.|.||--.-+.+.++|.---| .|+....++||+|+|.|..+..++.. .|.+..+| ..|+......+.
T Consensus 83 G~lgrGsMFifSe~QF~klL~i~~p--~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS-----~tMr~rL~kk~y 155 (288)
T KOG3987|consen 83 GFLGRGSMFIFSEEQFRKLLVIGGP--AWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELS-----WTMRDRLKKKNY 155 (288)
T ss_pred cccccCceEEecHHHHHHHHhcCCC--ccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhh-----HHHHHHHhhcCC
Confidence 4778888887666666555542223 46656689999999999998888764 35555543 457666666664
Q ss_pred CcEEecCCCCCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCC-CcEEEEE
Q 044932 355 PAVVSPLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRP-SGYFILS 409 (689)
Q Consensus 355 ~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRP-GG~fVIs 409 (689)
...- ..+-. -.|=.||+|.|.. ++.=+.++.++|..|+-||+| .|.+|++
T Consensus 156 nVl~-~~ew~---~t~~k~dli~clN-lLDRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 156 NVLT-EIEWL---QTDVKLDLILCLN-LLDRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred ceee-ehhhh---hcCceeehHHHHH-HHHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 3321 11111 1245699999863 334355788999999999999 8998887
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0075 Score=63.98 Aligned_cols=144 Identities=17% Similarity=0.130 Sum_probs=87.9
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcCC--eEEEEcCCcccHHHHHHHHHHc----C---C-CcEEe-
Q 044932 291 HYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAKE--VLTLTVGLKDDLVDLAQVALER----G---F-PAVVS- 359 (689)
Q Consensus 291 ~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~~--V~gmDIsp~D~seamlq~A~eR----G---L-~~i~~- 359 (689)
..++.|.+++|........-+||==|||.|.++-.++..+ +.|.++|-.|. -+-.+++.. + + |.+..
T Consensus 39 ~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Ml--l~s~fiLn~~~~~~~~~I~Pf~~~~ 116 (270)
T PF07942_consen 39 PILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFML--LASNFILNHCSQPNQFTIYPFVHSF 116 (270)
T ss_pred HHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHH--HHHHHHHcccCCCCcEEEecceecc
Confidence 4456676766631111234589999999999998887654 77777765432 122333332 0 0 00000
Q ss_pred ---------------------------------cCCCCCCCCCC---CCcceEEeccccccccccHHHHHHHHHhccCCC
Q 044932 360 ---------------------------------PLGNRRLPFPS---GVFDAIHCDGCSITWHAHGGKLLLEMNRILRPS 403 (689)
Q Consensus 360 ---------------------------------~~dt~~LPFpD---~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPG 403 (689)
..|-..+.-++ ++||.|+..+ .|.-..+.-.+|..|.++||||
T Consensus 117 sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F-FIDTA~Ni~~Yi~tI~~lLkpg 195 (270)
T PF07942_consen 117 SNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF-FIDTAENIIEYIETIEHLLKPG 195 (270)
T ss_pred cCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE-EeechHHHHHHHHHHHHHhccC
Confidence 00001111122 6999987542 3443346678999999999999
Q ss_pred cEEEEEcCC-----Cc-------h-hHHHHHHHHHHhcceeEEEeec
Q 044932 404 GYFILSTKH-----DS-------I-EEEEALTTLTASICWNILAHKT 437 (689)
Q Consensus 404 G~fVIsdp~-----~~-------l-e~~~~ie~La~~l~W~~v~~~~ 437 (689)
|++|=.+|- +. + ..++++..+++.++|+.+....
T Consensus 196 G~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 196 GYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 988877763 21 2 2467899999999999876543
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0031 Score=63.88 Aligned_cols=115 Identities=18% Similarity=0.162 Sum_probs=59.2
Q ss_pred CCCeEEEECCccchhH--HHhhc-CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecc---c
Q 044932 308 NIRVVLEIGSADLSFV--ASLLA-KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDG---C 381 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfa--a~La~-~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~---c 381 (689)
.+++|||+|||||.++ +++++ ..|+++|++|. ..+...+.+.+-+....+...|..+ .++.||.++..- .
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~-a~ei~r~N~~~l~g~v~f~~~dv~~---~~~~~dtvimNPPFG~ 120 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPE-ALEIARANAEELLGDVEFVVADVSD---FRGKFDTVIMNPPFGS 120 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHH-HHHHHHHHHHhhCCceEEEEcchhh---cCCccceEEECCCCcc
Confidence 3578999999999864 56666 46999999884 1122222222212223344444433 247788777541 1
Q ss_pred cccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEE
Q 044932 382 SITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 382 li~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~ 434 (689)
-.. +.|. .+|.-..++- -++.+....- ..+.++..+...+..++.
T Consensus 121 ~~r-haDr-~Fl~~Ale~s----~vVYsiH~a~--~~~f~~~~~~~~G~~v~~ 165 (198)
T COG2263 121 QRR-HADR-PFLLKALEIS----DVVYSIHKAG--SRDFVEKFAADLGGTVTH 165 (198)
T ss_pred ccc-cCCH-HHHHHHHHhh----heEEEeeccc--cHHHHHHHHHhcCCeEEE
Confidence 111 2232 2333333332 2333332211 223466777777766653
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00011 Score=68.14 Aligned_cols=95 Identities=25% Similarity=0.407 Sum_probs=65.3
Q ss_pred CeeEEeecCCcchhHHHHhccCCceEEEeccCCCC-CchhhhhccccchhhccccCCCCCCCccchhhccccccccccCC
Q 044932 546 KIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDRGLVGIYHDWCESFGTYPRSYDLLHADHLFSRLKSR 624 (689)
Q Consensus 546 ~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~RGLig~yhdwce~f~typrTyDLlHa~~lfs~~~~~ 624 (689)
.-.+|||+++|.|.|+..|...+. .|+-++.. ..+.. +-....-++-.+. ...+++||+|.+.++|....+
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~~~~~-~~~~~~fD~i~~~~~l~~~~d- 93 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFDAQDP-PFPDGSFDLIICNDVLEHLPD- 93 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEECHTH-HCHSSSEEEEEEESSGGGSSH-
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhhhhhh-hccccchhhHhhHHHHhhccc-
Confidence 345899999999999999988766 34433332 12221 1111221211111 235789999999999998774
Q ss_pred cCCccceeeeeccccccCcEEEEeCch
Q 044932 625 CRQPVSIVVEMDRILRPGGWAIVRDKV 651 (689)
Q Consensus 625 c~~~~~illEmDRILRP~G~~iirD~~ 651 (689)
...+|-+|=|+|+|||+++|.+..
T Consensus 94 ---~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 94 ---PEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp ---HHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred ---HHHHHHHHHHhcCCCCEEEEEEcC
Confidence 367899999999999999999754
|
... |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0027 Score=64.44 Aligned_cols=122 Identities=16% Similarity=0.096 Sum_probs=70.3
Q ss_pred CceeecCCCCcccchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhc--C--CeEEEEcCCcccHHHHHHH
Q 044932 273 GEYLTFPQNQSEFKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA--K--EVLTLTVGLKDDLVDLAQV 348 (689)
Q Consensus 273 g~~~~Fpgggt~F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~--~--~V~gmDIsp~D~seamlq~ 348 (689)
|=.|.+.-.-.+|..+...-...|.+++. ...+|||+-||.|.|+..++. . .|+++|+.|. .-+-+.+-
T Consensus 72 G~~f~~D~~kvyfs~rl~~Er~Ri~~~v~------~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~-a~~~L~~N 144 (200)
T PF02475_consen 72 GIRFKVDLSKVYFSPRLSTERRRIANLVK------PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPD-AVEYLKEN 144 (200)
T ss_dssp TEEEEEETTTS---GGGHHHHHHHHTC--------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HH-HHHHHHHH
T ss_pred CEEEEEccceEEEccccHHHHHHHHhcCC------cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHH-HHHHHHHH
Confidence 33444555567888887655555655432 357999999999999877765 2 4999999984 22344444
Q ss_pred HHHcCCCcE--EecCCCCCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEE
Q 044932 349 ALERGFPAV--VSPLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFI 407 (689)
Q Consensus 349 A~eRGL~~i--~~~~dt~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fV 407 (689)
+...++... ....|...++- ...||-|++.. .+ .-..+|..+.+++++||.+.
T Consensus 145 i~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l--p~---~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 145 IRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL--PE---SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HHHTT-TTTEEEEES-GGG----TT-EEEEEE----TS---SGGGGHHHHHHHEEEEEEEE
T ss_pred HHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC--hH---HHHHHHHHHHHHhcCCcEEE
Confidence 455565543 33456555543 68999888642 11 22357888999999999875
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0098 Score=64.76 Aligned_cols=98 Identities=16% Similarity=0.150 Sum_probs=62.3
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcC-C--------CcEEecCCCCC-CCCCCCCc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERG-F--------PAVVSPLGNRR-LPFPSGVF 373 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRG-L--------~~i~~~~dt~~-LPFpD~SF 373 (689)
..++||-||+|.|..+..++.. .|++++++| .+++.|++.- . ...+...|+.. |.-.+++|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~-----~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~y 177 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQ-----EVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKF 177 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCH-----HHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCc
Confidence 4689999999999988877653 378888876 4666666531 1 11222333311 22345789
Q ss_pred ceEEecccccccc------ccHHHHHH-HHHhccCCCcEEEEEcC
Q 044932 374 DAIHCDGCSITWH------AHGGKLLL-EMNRILRPSGYFILSTK 411 (689)
Q Consensus 374 DlVhcs~cli~W~------~d~~~aL~-EI~RVLRPGG~fVIsdp 411 (689)
|+|++-. .-++. -.-..++. .+.+.|+|||.|++...
T Consensus 178 DvIi~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 178 DVIIGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred cEEEecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 9999742 11111 01235676 78999999999988753
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0093 Score=62.83 Aligned_cols=66 Identities=18% Similarity=0.185 Sum_probs=46.8
Q ss_pred CCcceEEeccccccccccH---HHHHHHHHhccCCCcEEEEEcCC-------------CchhHHHHHHHHHHhcceeEEE
Q 044932 371 GVFDAIHCDGCSITWHAHG---GKLLLEMNRILRPSGYFILSTKH-------------DSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 371 ~SFDlVhcs~cli~W~~d~---~~aL~EI~RVLRPGG~fVIsdp~-------------~~le~~~~ie~La~~l~W~~v~ 434 (689)
..||+|+++.|+---..+. ..+++.+.++|||||+|++..-- ......+.+++.++..++.+..
T Consensus 157 ~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~ 236 (256)
T PF01234_consen 157 PKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIED 236 (256)
T ss_dssp SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEE
T ss_pred cchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEEe
Confidence 3599999888764433343 47899999999999999998532 1112446688888999998765
Q ss_pred ee
Q 044932 435 HK 436 (689)
Q Consensus 435 ~~ 436 (689)
..
T Consensus 237 ~~ 238 (256)
T PF01234_consen 237 LE 238 (256)
T ss_dssp EE
T ss_pred cc
Confidence 54
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0025 Score=70.34 Aligned_cols=96 Identities=15% Similarity=0.066 Sum_probs=60.9
Q ss_pred CeEEEECCccchhHHHhhc-C---CeEEEEcCCcccHHHHHHHHHHcCCCcE-EecCCCCCCCCCCCCcceEEecccccc
Q 044932 310 RVVLEIGSADLSFVASLLA-K---EVLTLTVGLKDDLVDLAQVALERGFPAV-VSPLGNRRLPFPSGVFDAIHCDGCSIT 384 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~-~---~V~gmDIsp~D~seamlq~A~eRGL~~i-~~~~dt~~LPFpD~SFDlVhcs~cli~ 384 (689)
.+|||++||+|.++..++. . .|+++|+++.-. +.+..-+...++... +...|+..+......||+|.+.-
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av-~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP---- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAV-ELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP---- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----
Confidence 4799999999999988753 2 489999987421 111222233455433 44444433221146799998642
Q ss_pred ccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 385 WHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 385 W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
. ..+..+|....+.++|||+++++.+
T Consensus 134 ~-Gs~~~~l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 134 F-GSPAPFLDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred C-CCcHHHHHHHHHHhcCCCEEEEEec
Confidence 1 2234677776788999999999953
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0064 Score=68.53 Aligned_cols=95 Identities=22% Similarity=0.261 Sum_probs=55.6
Q ss_pred CCeEEEECCccchhHHHhh--------cCCeEEEEcCCcccHHHHH-HHHHHcCCC--cEEecCCCCCCCCCCCCcceEE
Q 044932 309 IRVVLEIGSADLSFVASLL--------AKEVLTLTVGLKDDLVDLA-QVALERGFP--AVVSPLGNRRLPFPSGVFDAIH 377 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La--------~~~V~gmDIsp~D~seaml-q~A~eRGL~--~i~~~~dt~~LPFpD~SFDlVh 377 (689)
..+|||||||+|-+....+ ...|+++.-+|. ....+ +.+...+.. ..+...+++.+..| ..+|+|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~--A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPN--AVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIV 263 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTH--HHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHh--HHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEE
Confidence 4689999999998653222 235889987763 11222 222445543 33444566776666 5999998
Q ss_pred ec--cccccccccHHHHHHHHHhccCCCcEEE
Q 044932 378 CD--GCSITWHAHGGKLLLEMNRILRPSGYFI 407 (689)
Q Consensus 378 cs--~cli~W~~d~~~aL~EI~RVLRPGG~fV 407 (689)
+- +.+.. .+-....|.-..|.|||||.++
T Consensus 264 SElLGsfg~-nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 264 SELLGSFGD-NELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp E---BTTBT-TTSHHHHHHHGGGGEEEEEEEE
T ss_pred EeccCCccc-cccCHHHHHHHHhhcCCCCEEe
Confidence 63 11111 2223357888999999999876
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.022 Score=57.80 Aligned_cols=132 Identities=15% Similarity=0.160 Sum_probs=77.7
Q ss_pred CCeEEEECCccchhHHHhhcC---C--eEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecccc-
Q 044932 309 IRVVLEIGSADLSFVASLLAK---E--VLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCS- 382 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~--V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cl- 382 (689)
...+|+||||+|-....|+.. + ..+.|++|. .....+..|+..+........|... .+..++.|+++...-.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~-A~~~Tl~TA~~n~~~~~~V~tdl~~-~l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPE-ALEATLETARCNRVHIDVVRTDLLS-GLRNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHH-HHHHHHHHHHhcCCccceeehhHHh-hhccCCccEEEECCCcC
Confidence 567999999999877777653 2 567899885 3356667777665543222111100 1223788887653211
Q ss_pred -------------cccc--ccH----HHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccccCce
Q 044932 383 -------------ITWH--AHG----GKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEISEM 443 (689)
Q Consensus 383 -------------i~W~--~d~----~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~g~~ 443 (689)
..|. .+. ..+|..+.-+|.|-|.|++..-..... .++-.+++.-+|..........+.+
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p--~ei~k~l~~~g~~~~~~~~Rk~~~E 199 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKP--KEILKILEKKGYGVRIAMQRKAGGE 199 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCH--HHHHHHHhhcccceeEEEEEecCCc
Confidence 1132 122 245667778889999999987654432 2355577788886644333333333
Q ss_pred e
Q 044932 444 G 444 (689)
Q Consensus 444 ~ 444 (689)
.
T Consensus 200 ~ 200 (209)
T KOG3191|consen 200 T 200 (209)
T ss_pred e
Confidence 3
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0011 Score=68.83 Aligned_cols=112 Identities=19% Similarity=0.251 Sum_probs=70.9
Q ss_pred HHHHHHHHHhhhcccCCCCCCeeEEeecCCcchhHHHHhccC--CceEEEeccCCCC-Cchhhhhcc-------cc--ch
Q 044932 526 RHWKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQ--KIWVMNVVPVHAP-DTLPVIYDR-------GL--VG 593 (689)
Q Consensus 526 ~~W~~~v~~~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~--~vWVMNvvp~~~~-~tL~vI~~R-------GL--ig 593 (689)
..|++.+.+ + +.+..+ ..|+|.++|.|.++..|... +-+ +|+-++-. +-|...-+| +. |-
T Consensus 59 ~~~r~~~~~-~---~~~~~~--~~VLDlGcGtG~~~~~la~~~~~~~--~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~ 130 (261)
T PLN02233 59 RIWKRMAVS-W---SGAKMG--DRVLDLCCGSGDLAFLLSEKVGSDG--KVMGLDFSSEQLAVAASRQELKAKSCYKNIE 130 (261)
T ss_pred HHHHHHHHH-H---hCCCCC--CEEEEECCcCCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHhhhhhhccCCCeE
Confidence 568776542 2 233322 46999999999999888653 212 34444432 334333322 11 22
Q ss_pred hhccccCCCCCCCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 594 IYHDWCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 594 ~yhdwce~f~typrTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
+.+.-.+.++.-+.+||+|.+...|.... + ...+|-||-|+|+|||.++|-|
T Consensus 131 ~~~~d~~~lp~~~~sfD~V~~~~~l~~~~---d-~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 131 WIEGDATDLPFDDCYFDAITMGYGLRNVV---D-RLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred EEEcccccCCCCCCCEeEEEEecccccCC---C-HHHHHHHHHHHcCcCcEEEEEE
Confidence 23333566765557999999888777654 3 3567999999999999998875
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.00037 Score=69.38 Aligned_cols=93 Identities=25% Similarity=0.431 Sum_probs=59.9
Q ss_pred EEeecCCcchhHHHHhccC--CceEEEeccCCC-CCchh----hhhccccch---hhc-cccCCCCCCCccchhhccccc
Q 044932 549 NVMDMKSIYGGFAAALAQQ--KIWVMNVVPVHA-PDTLP----VIYDRGLVG---IYH-DWCESFGTYPRSYDLLHADHL 617 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~--~vWVMNvvp~~~-~~tL~----vI~~RGLig---~yh-dwce~f~typrTyDLlHa~~l 617 (689)
.|+|+++|.|+++..|... .+- |+-++- ++.+. .+-..|+-+ +++ |..+ . .+|.+||+|++.++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~---v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~-~-~~~~~fD~I~~~~~ 76 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQ---LHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAK-D-PFPDTYDLVFGFEV 76 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCE---EEEEECCHHHHHHHHHHHHhcCCCcceEEEeccccc-C-CCCCCCCEeehHHH
Confidence 5999999999999888653 222 222221 22222 222345422 222 2222 1 35789999999998
Q ss_pred cccccCCcCCccceeeeeccccccCcEEEEeCc
Q 044932 618 FSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDK 650 (689)
Q Consensus 618 fs~~~~~c~~~~~illEmDRILRP~G~~iirD~ 650 (689)
|....+ ...+|-++.|+|+|||++++.+-
T Consensus 77 l~~~~~----~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 77 IHHIKD----KMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHhCCC----HHHHHHHHHHHcCCCCEEEEEEc
Confidence 877644 24678899999999999998763
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.00072 Score=72.93 Aligned_cols=95 Identities=21% Similarity=0.269 Sum_probs=60.0
Q ss_pred eeEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCch----hhhhccccch---hh-ccccCCCCCCCccchhhcccc
Q 044932 547 IRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTL----PVIYDRGLVG---IY-HDWCESFGTYPRSYDLLHADH 616 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL----~vI~~RGLig---~y-hdwce~f~typrTyDLlHa~~ 616 (689)
-..|+|+++|.|+++..|... .. +|+=++- ++-+ ..+-.+|+.. .. .|. +.++.-+.+||+|.+..
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~~g~---~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~-~~~~~~~~~FD~V~s~~ 194 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARKYGA---NVKGITLSPVQAARANALAAAQGLSDKVSFQVADA-LNQPFEDGQFDLVWSME 194 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc-ccCCCCCCCccEEEECC
Confidence 457999999999999988764 22 2222221 1111 1223334422 11 132 33444568999999987
Q ss_pred ccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 617 LFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 617 lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
.+..+.++ ..+|-||-|+|+|||.++|-+
T Consensus 195 ~~~h~~d~----~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 195 SGEHMPDK----RKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred chhccCCH----HHHHHHHHHHcCCCcEEEEEE
Confidence 77665542 347889999999999999853
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0067 Score=63.40 Aligned_cols=97 Identities=13% Similarity=0.070 Sum_probs=58.7
Q ss_pred CCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHcCCCcE--EecCCC-CCCC-C-----CCCCcc
Q 044932 309 IRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALERGFPAV--VSPLGN-RRLP-F-----PSGVFD 374 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eRGL~~i--~~~~dt-~~LP-F-----pD~SFD 374 (689)
.++||+||+++|.-+.+|+. ..|+++++++... ..+.+...+.|+... +...++ +.|| + ..++||
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~-~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENY-ELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHH-HHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 57899999999987666653 2489999876321 112222233465432 222222 1222 1 136999
Q ss_pred eEEeccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 375 AIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 375 lVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
+|+.-. +...-..++..+.+.|+|||.+++..
T Consensus 159 ~iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 159 FIFVDA----DKDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred EEEecC----CHHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 998642 12233467777889999999998864
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0012 Score=66.07 Aligned_cols=114 Identities=18% Similarity=0.328 Sum_probs=65.4
Q ss_pred hHHHHHHHHHhhhcccCCCCCCeeEEeecCCcchhHHHHhccC--CceEEEeccCCC-CCchhh----hhcccc--chhh
Q 044932 525 TRHWKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQ--KIWVMNVVPVHA-PDTLPV----IYDRGL--VGIY 595 (689)
Q Consensus 525 ~~~W~~~v~~~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~--~vWVMNvvp~~~-~~tL~v----I~~RGL--ig~y 595 (689)
...|+..+-. .+.+..+ ..|+|+++|.|.++..|.+. +- .+|+=++- ++.+.. +...++ +-+.
T Consensus 30 ~~~~~~~~l~----~l~~~~~--~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~ 101 (231)
T TIGR02752 30 HKKWRKDTMK----RMNVQAG--TSALDVCCGTADWSIALAEAVGPE--GHVIGLDFSENMLSVGRQKVKDAGLHNVELV 101 (231)
T ss_pred hHHHHHHHHH----hcCCCCC--CEEEEeCCCcCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHhcCCCceEEE
Confidence 4566655432 2344433 46999999999999888653 11 01222222 122211 112232 1222
Q ss_pred ccccCCCCCCCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeCc
Q 044932 596 HDWCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDK 650 (689)
Q Consensus 596 hdwce~f~typrTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~ 650 (689)
+.=.+.++.-+.+||+|++...|....+. ..+|-|+-|+|+|||++++-+.
T Consensus 102 ~~d~~~~~~~~~~fD~V~~~~~l~~~~~~----~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 102 HGNAMELPFDDNSFDYVTIGFGLRNVPDY----MQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred EechhcCCCCCCCccEEEEecccccCCCH----HHHHHHHHHHcCcCeEEEEEEC
Confidence 22223344334799999988776554332 3467889999999999998763
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.017 Score=61.11 Aligned_cols=111 Identities=19% Similarity=0.236 Sum_probs=69.7
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCC--
Q 044932 291 HYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRL-- 366 (689)
Q Consensus 291 ~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~L-- 366 (689)
-|.+.| -.+|.+.. +..++||=||-|.|..+..++.+ .|+-+||++ ..++.+++- +|.....++.-++
T Consensus 57 iYHEmL-vHppl~~h-~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~-----~Vv~~~k~~-lP~~~~~~~DpRv~l 128 (262)
T PRK00536 57 IESELL-AHMGGCTK-KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADE-----KILDSFISF-FPHFHEVKNNKNFTH 128 (262)
T ss_pred hHHHHH-HHHHHhhC-CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCH-----HHHHHHHHH-CHHHHHhhcCCCEEE
Confidence 444434 34443332 36899999999999999888876 488888875 455555542 1110000110000
Q ss_pred --CC---CCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCch
Q 044932 367 --PF---PSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSI 415 (689)
Q Consensus 367 --PF---pD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~l 415 (689)
-+ ..++||+|++-. + .....+..+.|+|+|||.++.......+
T Consensus 129 ~~~~~~~~~~~fDVIIvDs-~-----~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~ 176 (262)
T PRK00536 129 AKQLLDLDIKKYDLIICLQ-E-----PDIHKIDGLKRMLKEDGVFISVAKHPLL 176 (262)
T ss_pred eehhhhccCCcCCEEEEcC-C-----CChHHHHHHHHhcCCCcEEEECCCCccc
Confidence 01 237899998642 2 2347789999999999999998765543
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.015 Score=58.00 Aligned_cols=100 Identities=15% Similarity=0.025 Sum_probs=54.5
Q ss_pred CCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCCC--cEEecCCC-CCCC-C-CC-CCcceEEec
Q 044932 309 IRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGFP--AVVSPLGN-RRLP-F-PS-GVFDAIHCD 379 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL~--~i~~~~dt-~~LP-F-pD-~SFDlVhcs 379 (689)
..+|||++||+|.++..++.+ .|+++|+++... ....+-+...++. ..+...|. ..|. + .. ..||+|+.-
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~-~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKAN-QTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 468999999999999888765 488899876421 1111222223443 22333333 1121 1 12 247888753
Q ss_pred cccccccc-cHHHHHHHH--HhccCCCcEEEEEcCC
Q 044932 380 GCSITWHA-HGGKLLLEM--NRILRPSGYFILSTKH 412 (689)
Q Consensus 380 ~cli~W~~-d~~~aL~EI--~RVLRPGG~fVIsdp~ 412 (689)
- ++.. ....+|.-+ ..+|+++|.+++..+.
T Consensus 129 P---Py~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 129 P---PFFNGALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred c---CCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 1 1111 112333322 4579999988887554
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0024 Score=65.05 Aligned_cols=113 Identities=17% Similarity=0.163 Sum_probs=67.6
Q ss_pred HHHHHHHhhhcccCCCCCCeeEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhcccc-chhhccccCCCCCC
Q 044932 528 WKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDRGL-VGIYHDWCESFGTY 605 (689)
Q Consensus 528 W~~~v~~~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~RGL-ig~yhdwce~f~ty 605 (689)
+++.+....+..|.. .....|+|+++|.|.++..|..... .|+-++- +.-|...-.++- +...+.=.+.++..
T Consensus 26 ~q~~~a~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~ 100 (251)
T PRK10258 26 LQRQSADALLAMLPQ--RKFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDIESLPLA 100 (251)
T ss_pred HHHHHHHHHHHhcCc--cCCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCC
Confidence 344444334443432 3456799999999999988876532 2333332 233332223321 11122223556666
Q ss_pred CccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 606 PRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 606 prTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
+.+||+|-++..|.. .. + +..+|-||-|+|+|||.+++-.
T Consensus 101 ~~~fD~V~s~~~l~~-~~--d-~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 101 TATFDLAWSNLAVQW-CG--N-LSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred CCcEEEEEECchhhh-cC--C-HHHHHHHHHHHcCCCeEEEEEe
Confidence 789999987766542 22 2 3568999999999999999873
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0056 Score=59.47 Aligned_cols=118 Identities=13% Similarity=0.072 Sum_probs=72.9
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhh----hhccccchh--hccccCCCCCCCccchhhcccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPV----IYDRGLVGI--YHDWCESFGTYPRSYDLLHADHLFSR 620 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~v----I~~RGLig~--yhdwce~f~typrTyDLlHa~~lfs~ 620 (689)
+.|+|+++|.|.++.+|..... .|+-++- +..+.. +...|+-.. .-|+.+ ..+.+||+|-++--|-.
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~---~~~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFK---GVRGKFDVILFNPPYLP 94 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccc---ccCCcccEEEECCCCCC
Confidence 4599999999999988887543 3443332 222211 111222111 123333 34679999987755532
Q ss_pred cc------------------CCcCCccceeeeeccccccCcEEEEeCchhh-HHHHHHHHhhcceeEEEee
Q 044932 621 LK------------------SRCRQPVSIVVEMDRILRPGGWAIVRDKVEI-LDPLEGILRSLHWEIRMTY 672 (689)
Q Consensus 621 ~~------------------~~c~~~~~illEmDRILRP~G~~iirD~~~~-l~~v~~i~~~lrW~~~~~~ 672 (689)
.. .+.. +..+|-++.|+|+|||.+++-+...- ...+..+++...|+.++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKV-IDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHH-HHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEE
Confidence 21 1122 36678899999999999988765554 6677777777778877653
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.01 Score=64.84 Aligned_cols=95 Identities=21% Similarity=0.267 Sum_probs=66.5
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH--cCCCcEEecCCCCCCCCCCCCcceEEeccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE--RGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e--RGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
.....+|+|.|.|..+..++.. .|-+++++...+ ++.|.. .|+....+++ -+.+|=. |+|++-.|+.
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v----~~~a~~~~~gV~~v~gdm-fq~~P~~----daI~mkWiLh 247 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFV----LAAAPYLAPGVEHVAGDM-FQDTPKG----DAIWMKWILH 247 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHH----HhhhhhhcCCcceecccc-cccCCCc----CeEEEEeecc
Confidence 3678999999999988777653 477788765322 333322 2333223222 1334433 4999999999
Q ss_pred cccc-cHHHHHHHHHhccCCCcEEEEEcC
Q 044932 384 TWHA-HGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 384 ~W~~-d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
||.+ +-.++|+....-|+|||.+++-+.
T Consensus 248 dwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 248 DWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred cCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 9985 557899999999999999999864
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.018 Score=63.04 Aligned_cols=119 Identities=25% Similarity=0.377 Sum_probs=69.1
Q ss_pred CCCeEEEECCccchhHHHhhc---C--C-eEEEEcCCcccHHHHHHHHHHcCCCc-EEecCCCCCCC--CCCC-CcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLA---K--E-VLTLTVGLKDDLVDLAQVALERGFPA-VVSPLGNRRLP--FPSG-VFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~---~--~-V~gmDIsp~D~seamlq~A~eRGL~~-i~~~~dt~~LP--FpD~-SFDlVh 377 (689)
.+.+|||+.++.|+=+.+|+. . . |+++|+++.-. ..+...+.+-|+.. .....|+..++ ++.. .||.|+
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl-~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iL 234 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRL-KRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRIL 234 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHH-HHHHHHHHHcCCCceEEEecccccccccccccCcCcEEE
Confidence 457999999999974444432 2 2 58999887422 23333344447775 33445554443 2323 599998
Q ss_pred ----eccc-------cccccccH----------HHHHHHHHhccCCCcEEEEEcCCCchh-HHHHHHHHHHh
Q 044932 378 ----CDGC-------SITWHAHG----------GKLLLEMNRILRPSGYFILSTKHDSIE-EEEALTTLTAS 427 (689)
Q Consensus 378 ----cs~c-------li~W~~d~----------~~aL~EI~RVLRPGG~fVIsdp~~~le-~~~~ie~La~~ 427 (689)
|+.. -+-|...+ ..+|....++|||||.++.++=.-..+ ...-+..+++.
T Consensus 235 lDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~ 306 (355)
T COG0144 235 LDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLER 306 (355)
T ss_pred ECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHh
Confidence 4321 11132221 257788899999999999997432222 22335455544
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.015 Score=65.86 Aligned_cols=96 Identities=21% Similarity=0.295 Sum_probs=66.1
Q ss_pred eEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcC---CCc-EEecCCCCCCCCCCCCcceEEeccccc
Q 044932 311 VVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERG---FPA-VVSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 311 ~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRG---L~~-i~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
++|-+|||--.+...|.+. .|+.+|+|+..+ ..+..++ -+. .+...+...+.|+|.|||+|+.-..+-
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V-----~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlD 125 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVV-----AAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLD 125 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHH-----HHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccc
Confidence 8999999999888777754 588899987533 2222332 222 234567788999999999998643211
Q ss_pred c---------ccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 384 T---------WHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 384 ~---------W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
+ |.......+.|+.|||+|||+++..+-
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 1 122234678899999999998776543
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.015 Score=62.23 Aligned_cols=65 Identities=22% Similarity=0.307 Sum_probs=43.1
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc----CC--CcEEecCCCCCCCCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER----GF--PAVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR----GL--~~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
...+|||||||+|.++..|+.. .|+++|+++. +++.+.++ +. ...+...|....+++ .||+|+++
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~-----li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--~~d~VvaN 108 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPR-----MVAELKKRFQNSPLASKLEVIEGDALKTEFP--YFDVCVAN 108 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhCCcEEEEECCHH-----HHHHHHHHHHhcCCCCcEEEEECCHhhhccc--ccCEEEec
Confidence 3468999999999999888764 5999999864 44444432 21 123344455454544 68988764
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.016 Score=59.86 Aligned_cols=92 Identities=16% Similarity=0.200 Sum_probs=56.7
Q ss_pred CCeEEEECCccchhHHHhh---c-CCe--EEEEcCCcccHHHHHHHHHHc---CC------------CcEEecCCCCCCC
Q 044932 309 IRVVLEIGSADLSFVASLL---A-KEV--LTLTVGLKDDLVDLAQVALER---GF------------PAVVSPLGNRRLP 367 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La---~-~~V--~gmDIsp~D~seamlq~A~eR---GL------------~~i~~~~dt~~LP 367 (689)
+...||+|.|+|.+++.+. . .+. .|++.-| +.++.+.+. -+ ...+.+.|....-
T Consensus 83 G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~-----eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~ 157 (237)
T KOG1661|consen 83 GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIP-----ELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGY 157 (237)
T ss_pred CcceeecCCCccHHHHHHHHHhcCCCccccchhhhH-----HHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccC
Confidence 4679999999998765443 2 233 6666544 333333321 11 1122244444443
Q ss_pred CCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 368 FPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 368 FpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
-+...||.|||.... . ....++...|+|||.+++-.-+
T Consensus 158 ~e~a~YDaIhvGAaa-~------~~pq~l~dqL~~gGrllip~~~ 195 (237)
T KOG1661|consen 158 AEQAPYDAIHVGAAA-S------ELPQELLDQLKPGGRLLIPVGQ 195 (237)
T ss_pred CccCCcceEEEccCc-c------ccHHHHHHhhccCCeEEEeecc
Confidence 456789999996322 2 5677888899999999986543
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.13 Score=53.93 Aligned_cols=118 Identities=23% Similarity=0.268 Sum_probs=77.3
Q ss_pred CCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCCCcEE-ecCCCCCC---CCCCCCcceEEecc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGFPAVV-SPLGNRRL---PFPSGVFDAIHCDG 380 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL~~i~-~~~dt~~L---PFpD~SFDlVhcs~ 380 (689)
..+++||+|+-||+|+..|+++ .|+++|+.-. |+.--++.....+. ...+...| -|. ...|+++|--
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~-----Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~Dv 152 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYG-----QLHWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDV 152 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCC-----ccCHhHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEe
Confidence 4689999999999999999876 4999998653 33322332222221 11222222 133 3678998753
Q ss_pred ccccccccHHHHHHHHHhccCCCcEEEEEcCCCc------------h-------hHHHHHHHHHHhcceeEEEe
Q 044932 381 CSITWHAHGGKLLLEMNRILRPSGYFILSTKHDS------------I-------EEEEALTTLTASICWNILAH 435 (689)
Q Consensus 381 cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~------------l-------e~~~~ie~La~~l~W~~v~~ 435 (689)
.+|. ...+|-.+..+|.|+|.++....|.+ . .-...+..++...+|....-
T Consensus 153 SFIS----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl 222 (245)
T COG1189 153 SFIS----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGL 222 (245)
T ss_pred ehhh----HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeee
Confidence 3333 44899999999999999998865521 1 11246888899999988654
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.012 Score=61.94 Aligned_cols=156 Identities=11% Similarity=0.148 Sum_probs=79.5
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCccchhHHHhhc-----------CCeEEEEcCCcccHHHHHHHHHHcCCCcE---E
Q 044932 293 LESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA-----------KEVLTLTVGLKDDLVDLAQVALERGFPAV---V 358 (689)
Q Consensus 293 id~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~-----------~~V~gmDIsp~D~seamlq~A~eRGL~~i---~ 358 (689)
.++|.+++.. . ...+|||-+||+|+|..++.. ..++|+|+++....-+.+..+. +|+... +
T Consensus 35 ~~l~~~~~~~-~---~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l-~~~~~~~~~i 109 (311)
T PF02384_consen 35 VDLMVKLLNP-K---KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL-HGIDNSNINI 109 (311)
T ss_dssp HHHHHHHHTT-----TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH-TTHHCBGCEE
T ss_pred HHHHHhhhhc-c---ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh-hccccccccc
Confidence 3455555531 1 346899999999998765543 3588999987433222222222 232221 2
Q ss_pred ecCCCCCCC-CC-CCCcceEEec--cccccc-----------c-------ccHHHHHHHHHhccCCCcEEEEEcCCCchh
Q 044932 359 SPLGNRRLP-FP-SGVFDAIHCD--GCSITW-----------H-------AHGGKLLLEMNRILRPSGYFILSTKHDSIE 416 (689)
Q Consensus 359 ~~~dt~~LP-Fp-D~SFDlVhcs--~cli~W-----------~-------~d~~~aL~EI~RVLRPGG~fVIsdp~~~le 416 (689)
...++...+ +. ...||+|++. +....| . .....++.-+.+.|++||++++..|...+.
T Consensus 110 ~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~ 189 (311)
T PF02384_consen 110 IQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLF 189 (311)
T ss_dssp EES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHH
T ss_pred cccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhh
Confidence 333432222 22 5789999874 111111 0 011246777999999999999988876542
Q ss_pred ---HHHHHHHHHHhcce-eEEEee-cccc----CceeEEEEEeCCC
Q 044932 417 ---EEEALTTLTASICW-NILAHK-TDEI----SEMGVKIYQKPES 453 (689)
Q Consensus 417 ---~~~~ie~La~~l~W-~~v~~~-~~~~----g~~~i~IwqKp~~ 453 (689)
....+++.+-.-++ ..+..- ...+ -...|++++|...
T Consensus 190 ~~~~~~~iR~~ll~~~~i~aVI~Lp~~~F~~t~v~t~ilil~k~~~ 235 (311)
T PF02384_consen 190 SSSSEKKIRKYLLENGYIEAVISLPSNLFKPTGVPTSILILNKKKP 235 (311)
T ss_dssp GSTHHHHHHHHHHHHEEEEEEEE--TTSSSSSSS-EEEEEEEESSS
T ss_pred ccchHHHHHHHHHhhchhhEEeecccceecccCcCceEEEEeeccc
Confidence 22346544433333 332221 1111 1345777887653
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.0062 Score=59.56 Aligned_cols=118 Identities=19% Similarity=0.157 Sum_probs=68.9
Q ss_pred cccCCCCCCeeEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhhh----hccccchhhcccc-CCCCCCCccch
Q 044932 538 TGLGIDWSKIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPVI----YDRGLVGIYHDWC-ESFGTYPRSYD 610 (689)
Q Consensus 538 ~~l~~~~~~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~vI----~~RGLig~yhdwc-e~f~typrTyD 610 (689)
..|.+.. -.+|+|+++|.|.++.++... +- .+|+-++- +..+... -..|+-.+ .-.| ..+..++..||
T Consensus 25 ~~l~~~~--~~~vLDiG~G~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~n~~~~~~~~i-~~~~~d~~~~~~~~~D 99 (187)
T PRK08287 25 SKLELHR--AKHLIDVGAGTGSVSIEAALQFPS--LQVTAIERNPDALRLIKENRQRFGCGNI-DIIPGEAPIELPGKAD 99 (187)
T ss_pred HhcCCCC--CCEEEEECCcCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhCCCCe-EEEecCchhhcCcCCC
Confidence 3344443 347999999999998877542 21 12322222 1122111 11122110 0001 11234567899
Q ss_pred hhccccccccccCCcCCccceeeeeccccccCcEEEEeC-chhhHHHHHHHHhhccee
Q 044932 611 LLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD-KVEILDPLEGILRSLHWE 667 (689)
Q Consensus 611 LlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD-~~~~l~~v~~i~~~lrW~ 667 (689)
+|.+++.+. . +..++-++-|+|+|||.+++-+ ..+-..++..+++...+.
T Consensus 100 ~v~~~~~~~------~-~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 100 AIFIGGSGG------N-LTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVS 150 (187)
T ss_pred EEEECCCcc------C-HHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCC
Confidence 998776432 3 3567778899999999999976 455677788888877774
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.0027 Score=62.77 Aligned_cols=50 Identities=24% Similarity=0.326 Sum_probs=40.8
Q ss_pred CCCCCCCCCCcceEEecccccccc-ccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 363 NRRLPFPSGVFDAIHCDGCSITWH-AHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 363 t~~LPFpD~SFDlVhcs~cli~W~-~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+..++|.|+|.|+|.|..++-|.. .....+++|.+|+|||||++-++.|.
T Consensus 38 s~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 38 SNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred hhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence 356789999999999876555533 35568999999999999999999875
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.0015 Score=68.05 Aligned_cols=104 Identities=13% Similarity=0.169 Sum_probs=59.2
Q ss_pred cCCCCCCeeEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhhhhcc----ccchhhccccCCCCCCCccchhhc
Q 044932 540 LGIDWSKIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPVIYDR----GLVGIYHDWCESFGTYPRSYDLLH 613 (689)
Q Consensus 540 l~~~~~~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~vI~~R----GLig~yhdwce~f~typrTyDLlH 613 (689)
+.++.+ ..|+|+++|+|+++..|... .. +|+-++. ++.+...-.| ..|-+.+.=+...+.-+.+||+|+
T Consensus 48 l~l~~~--~~VLDiGcG~G~~a~~la~~~~~---~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~ 122 (263)
T PTZ00098 48 IELNEN--SKVLDIGSGLGGGCKYINEKYGA---HVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIY 122 (263)
T ss_pred CCCCCC--CEEEEEcCCCChhhHHHHhhcCC---EEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEE
Confidence 444433 35999999999998888543 22 2332222 1222222211 112111111122233347999999
Q ss_pred cccccccccCCcCCccceeeeeccccccCcEEEEeCc
Q 044932 614 ADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDK 650 (689)
Q Consensus 614 a~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~ 650 (689)
+...|-... ..+ ...+|-++-|+|+|||+++|.|-
T Consensus 123 s~~~l~h~~-~~d-~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 123 SRDAILHLS-YAD-KKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred EhhhHHhCC-HHH-HHHHHHHHHHHcCCCcEEEEEEe
Confidence 976654432 113 24578899999999999999863
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.0017 Score=68.60 Aligned_cols=108 Identities=19% Similarity=0.348 Sum_probs=68.1
Q ss_pred hhhcccCCCCCCeeEEeecCCcchhHHHHhccC-CceEEEeccCCCCCch----hhhhccccchhhccccCCCCCCCccc
Q 044932 535 SYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAPDTL----PVIYDRGLVGIYHDWCESFGTYPRSY 609 (689)
Q Consensus 535 ~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~~tL----~vI~~RGLig~yhdwce~f~typrTy 609 (689)
.+...+++++|. .|||+++|.||||-.+..+ .+=|.=|.- +++.+ .-|-++||-+.-.=-|.-+..+|-+|
T Consensus 53 ~~~~~~~l~~G~--~vLDiGcGwG~~~~~~a~~~g~~v~gitl--S~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 53 LLCEKLGLKPGD--RVLDIGCGWGGLAIYAAERYGCHVTGITL--SEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHTTTT--TT---EEEEES-TTSHHHHHHHHHH--EEEEEES---HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHcCcEEEEEEC--CHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 456677888875 8999999999999999877 664432221 22333 34668887654333334444555599
Q ss_pred hhhccccccccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 610 DLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 610 DLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
|-|=+-++|-+.... . ....+-.+.|+|+|||.+++.
T Consensus 129 D~IvSi~~~Ehvg~~-~-~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRK-N-YPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp SEEEEESEGGGTCGG-G-HHHHHHHHHHHSETTEEEEEE
T ss_pred CEEEEEechhhcChh-H-HHHHHHHHHHhcCCCcEEEEE
Confidence 999999998876432 2 245688999999999999987
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.072 Score=56.21 Aligned_cols=110 Identities=21% Similarity=0.218 Sum_probs=59.6
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHH--cCCCcEEe----
Q 044932 291 HYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALE--RGFPAVVS---- 359 (689)
Q Consensus 291 ~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~e--RGL~~i~~---- 359 (689)
.-+..|...+|.+ ..++|||+|||+|....+..+ ..++.+|.++ .|++++.. +..+....
T Consensus 20 ~vl~El~~r~p~f----~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~-----~~~~l~~~l~~~~~~~~~~~~~ 90 (274)
T PF09243_consen 20 RVLSELRKRLPDF----RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSP-----EMLELAKRLLRAGPNNRNAEWR 90 (274)
T ss_pred HHHHHHHHhCcCC----CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCH-----HHHHHHHHHHhcccccccchhh
Confidence 3345555555543 367999999999974433332 2466677654 45555433 22221111
Q ss_pred -cCCCCCCCCCCCCcceEEecccccccc-ccHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 360 -PLGNRRLPFPSGVFDAIHCDGCSITWH-AHGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 360 -~~dt~~LPFpD~SFDlVhcs~cli~W~-~d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
..-...+++. ..|+|++++.+.+.. .....++..+.+.+.+ +++|.++..
T Consensus 91 ~~~~~~~~~~~--~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt 142 (274)
T PF09243_consen 91 RVLYRDFLPFP--PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGT 142 (274)
T ss_pred hhhhcccccCC--CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCC
Confidence 1111223444 339999987664422 2234555566565655 888887754
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.067 Score=55.82 Aligned_cols=97 Identities=16% Similarity=0.153 Sum_probs=59.8
Q ss_pred CCeEEEECCccchhH--HHhh--cC-CeEEEEcCCcccHHHHHHHHHHcCCCcEEe--cCCC-CCCC-----CCCCCcce
Q 044932 309 IRVVLEIGSADLSFV--ASLL--AK-EVLTLTVGLKDDLVDLAQVALERGFPAVVS--PLGN-RRLP-----FPSGVFDA 375 (689)
Q Consensus 309 ~R~VLDVGCGtGsfa--a~La--~~-~V~gmDIsp~D~seamlq~A~eRGL~~i~~--~~dt-~~LP-----FpD~SFDl 375 (689)
.+++||||.=||.-+ .+|+ +. .|+++|+++... +-..++....|+.-.+. ...+ +.|+ ...++||+
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~-~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAY-EIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHH-HHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 578999998888533 3332 33 499999987422 22234444445432211 1111 1111 45789999
Q ss_pred EEeccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 376 IHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 376 Vhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
++.- +|-.+-..++.+.-|+||+||.+++.-
T Consensus 153 aFvD----adK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 153 AFVD----ADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEEc----cchHHHHHHHHHHHhhcccccEEEEec
Confidence 9753 344444578899999999999999864
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.087 Score=56.29 Aligned_cols=114 Identities=19% Similarity=0.208 Sum_probs=70.1
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcC-CCc--------E
Q 044932 291 HYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERG-FPA--------V 357 (689)
Q Consensus 291 ~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRG-L~~--------i 357 (689)
.|.. +..++|.+..+ ..++||=||-|.|+.+..++.. .++.++|+| +.++.|++.- ... .
T Consensus 61 ~yhE-ml~h~~~~ah~-~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~-----~Vi~~ar~~l~~~~~~~~dpRv~ 133 (282)
T COG0421 61 IYHE-MLAHVPLLAHP-NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDP-----AVIELARKYLPEPSGGADDPRVE 133 (282)
T ss_pred HHHH-HHHhchhhhCC-CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCH-----HHHHHHHHhccCcccccCCCceE
Confidence 3433 33445544444 4589999999999999888865 478888876 5677776641 111 1
Q ss_pred EecCCCCC-CC-CCCCCcceEEeccccccccc----cHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 358 VSPLGNRR-LP-FPSGVFDAIHCDGCSITWHA----HGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 358 ~~~~dt~~-LP-FpD~SFDlVhcs~cli~W~~----d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
+...|... +. ++ .+||+|++-. .-+-.+ .-..++..++|.|+++|.++......
T Consensus 134 i~i~Dg~~~v~~~~-~~fDvIi~D~-tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~ 193 (282)
T COG0421 134 IIIDDGVEFLRDCE-EKFDVIIVDS-TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSP 193 (282)
T ss_pred EEeccHHHHHHhCC-CcCCEEEEcC-CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence 11112111 11 33 4899998631 111000 11578999999999999999985443
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.03 Score=61.04 Aligned_cols=106 Identities=13% Similarity=0.143 Sum_probs=61.0
Q ss_pred eEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH----cCCCc-EEecCCCCC-CC-------C---C---
Q 044932 311 VVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE----RGFPA-VVSPLGNRR-LP-------F---P--- 369 (689)
Q Consensus 311 ~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e----RGL~~-i~~~~dt~~-LP-------F---p--- 369 (689)
+|||++||+|.|+..|+.. .|+++|+++. +++.|.+ .++.. .+...+... ++ + .
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~-----av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 274 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFRRVLATEIAKP-----SVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGID 274 (353)
T ss_pred cEEEEeccccHHHHHHHHhCCEEEEEECCHH-----HHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccc
Confidence 5999999999999988753 5999998864 4444443 45532 233333222 11 1 0
Q ss_pred --CCCcceEEec--cccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEE
Q 044932 370 --SGVFDAIHCD--GCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 370 --D~SFDlVhcs--~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v 433 (689)
...||+|+.- +.-+ ...++.-+ ++|++.++++..+..+.. .+..|.+. |++.
T Consensus 275 ~~~~~~d~v~lDPPR~G~-----~~~~l~~l---~~~~~ivYvsC~p~tlaR--Dl~~L~~~--Y~l~ 330 (353)
T TIGR02143 275 LKSYNCSTIFVDPPRAGL-----DPDTCKLV---QAYERILYISCNPETLKA--NLEQLSET--HRVE 330 (353)
T ss_pred cccCCCCEEEECCCCCCC-----cHHHHHHH---HcCCcEEEEEcCHHHHHH--HHHHHhcC--cEEE
Confidence 1237988753 1111 12344444 448999999988754432 25555433 6654
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.22 Score=55.25 Aligned_cols=129 Identities=13% Similarity=0.115 Sum_probs=72.4
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCCC-Cchhhh----hccc-----cchhhccccCCCCCC-Cccchhhccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-DTLPVI----YDRG-----LVGIYHDWCESFGTY-PRSYDLLHAD 615 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-~tL~vI----~~RG-----Lig~yhdwce~f~ty-prTyDLlHa~ 615 (689)
..|+|+++|+|-.+.+|... |-. .|+=++.. ..+... -.-| -+-++ +...++.. +.+||+|=++
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~--~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~--~~D~l~~~~~~~fDlIlsN 305 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQA--KVVFVDESPMAVASSRLNVETNMPEALDRCEFM--INNALSGVEPFRFNAVLCN 305 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCcccCceEEEE--EccccccCCCCCEEEEEEC
Confidence 47999999999999888653 211 12222211 111000 0001 12222 23334444 3489999887
Q ss_pred cccccccC-CcCCccceeeeeccccccCcEEEEe--CchhhHHHHHHHHhhcceeEEEeecCCCceEEEEEe
Q 044932 616 HLFSRLKS-RCRQPVSIVVEMDRILRPGGWAIVR--DKVEILDPLEGILRSLHWEIRMTYAQDKEGILCAQK 684 (689)
Q Consensus 616 ~lfs~~~~-~c~~~~~illEmDRILRP~G~~iir--D~~~~l~~v~~i~~~lrW~~~~~~~~~~E~iL~~~K 684 (689)
--|..... .-.+...++-+.-|+|+|||.+||- -..++..+++++.. ++++.....+=.||-|+|
T Consensus 306 PPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg----~~~~va~~~kf~vl~a~k 373 (378)
T PRK15001 306 PPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG----NCTTIATNNKFVVLKAVK 373 (378)
T ss_pred cCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcC----CceEEccCCCEEEEEEEe
Confidence 66643211 1122245677889999999998886 34456666666443 445554444567887777
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.051 Score=59.69 Aligned_cols=91 Identities=18% Similarity=0.157 Sum_probs=56.6
Q ss_pred CCCeEEEECCccchhHHHhhcCC--eEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCC-CCCCCCCcceEEecccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAKE--VLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRR-LPFPSGVFDAIHCDGCSIT 384 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~~--V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~-LPFpD~SFDlVhcs~cli~ 384 (689)
.+.++||+||++|+|+..|+.++ |+++|..+- .......+ .......+.-+ .|- .+.||+|+|-.+
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l------~~~L~~~~-~V~h~~~d~fr~~p~-~~~vDwvVcDmv--- 279 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPM------AQSLMDTG-QVEHLRADGFKFRPP-RKNVDWLVCDMV--- 279 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhc------CHhhhCCC-CEEEEeccCcccCCC-CCCCCEEEEecc---
Confidence 46799999999999999999876 888886542 12222221 12222222222 222 578999998643
Q ss_pred ccccHHHHHHHHHhccCCC--cEEEEEcC
Q 044932 385 WHAHGGKLLLEMNRILRPS--GYFILSTK 411 (689)
Q Consensus 385 W~~d~~~aL~EI~RVLRPG--G~fVIsdp 411 (689)
..|..++.-|.+-|..| ..+|+.-.
T Consensus 280 --e~P~rva~lm~~Wl~~g~cr~aIfnLK 306 (357)
T PRK11760 280 --EKPARVAELMAQWLVNGWCREAIFNLK 306 (357)
T ss_pred --cCHHHHHHHHHHHHhcCcccEEEEEEE
Confidence 24566777777777665 45666543
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.031 Score=61.14 Aligned_cols=113 Identities=15% Similarity=0.145 Sum_probs=62.5
Q ss_pred CeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCc-EEecCCCCC-CC-C--------------CC
Q 044932 310 RVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPA-VVSPLGNRR-LP-F--------------PS 370 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~-i~~~~dt~~-LP-F--------------pD 370 (689)
.+|||++||+|.|+..|+.. .|+++|+++... +.+.+-+...++.. .+...+... ++ + ..
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai-~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSV-AAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHH-HHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 46999999999999988753 599999887422 12222233345542 233333222 11 1 02
Q ss_pred CCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEE
Q 044932 371 GVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 371 ~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v 433 (689)
..||+|+.-- +-..-...++.-+. +|++.++++..+..+. ..+..+.+ +|.+.
T Consensus 287 ~~~D~v~lDP---PR~G~~~~~l~~l~---~~~~ivyvSC~p~tla--rDl~~L~~--gY~l~ 339 (362)
T PRK05031 287 YNFSTIFVDP---PRAGLDDETLKLVQ---AYERILYISCNPETLC--ENLETLSQ--THKVE 339 (362)
T ss_pred CCCCEEEECC---CCCCCcHHHHHHHH---ccCCEEEEEeCHHHHH--HHHHHHcC--CcEEE
Confidence 2589998631 10001123444443 4799999998774432 22555543 67664
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.0022 Score=63.76 Aligned_cols=93 Identities=17% Similarity=0.297 Sum_probs=59.3
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchh----hhhccccc---hhhccccCCCCCCCccchhhccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLP----VIYDRGLV---GIYHDWCESFGTYPRSYDLLHADHLFS 619 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~----vI~~RGLi---g~yhdwce~f~typrTyDLlHa~~lfs 619 (689)
-.|+|+++|.|.++..|.++. + +|+-++.. .-+. .+..+|+- ..-.|+.+ + .++.+||+|-+..+|-
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g-~--~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD~I~~~~~~~ 106 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANG-F--DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN-L-TFDGEYDFILSTVVLM 106 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCC-C--EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh-C-CcCCCcCEEEEecchh
Confidence 469999999999999998764 2 34444432 2221 12334442 22234433 2 2478899999988875
Q ss_pred cccCCcCCccceeeeeccccccCcEEEE
Q 044932 620 RLKSRCRQPVSIVVEMDRILRPGGWAIV 647 (689)
Q Consensus 620 ~~~~~c~~~~~illEmDRILRP~G~~ii 647 (689)
... .-. +..++-+|-|.|+|||++++
T Consensus 107 ~~~-~~~-~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 107 FLE-AKT-IPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hCC-HHH-HHHHHHHHHHHcCCCcEEEE
Confidence 432 223 25678999999999999654
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.0049 Score=63.28 Aligned_cols=103 Identities=17% Similarity=0.303 Sum_probs=64.5
Q ss_pred hhcccCCCCCCeeEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhhhhccccchhhccccCCCCCCCccchhhc
Q 044932 536 YLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPVIYDRGLVGIYHDWCESFGTYPRSYDLLH 613 (689)
Q Consensus 536 y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~vI~~RGLig~yhdwce~f~typrTyDLlH 613 (689)
++..+....+ ..|+|+++|.|.++.+|... |-. .|+=++- +..+...-.+++ -+.+.--+.+. .+.+||+|+
T Consensus 21 ll~~l~~~~~--~~vLDlGcG~G~~~~~l~~~~p~~--~v~gvD~s~~~~~~a~~~~~-~~~~~d~~~~~-~~~~fD~v~ 94 (255)
T PRK14103 21 LLARVGAERA--RRVVDLGCGPGNLTRYLARRWPGA--VIEALDSSPEMVAAARERGV-DARTGDVRDWK-PKPDTDVVV 94 (255)
T ss_pred HHHhCCCCCC--CEEEEEcCCCCHHHHHHHHHCCCC--EEEEEECCHHHHHHHHhcCC-cEEEcChhhCC-CCCCceEEE
Confidence 3444444333 67999999999999998764 111 2333332 344444444542 12221123332 346899999
Q ss_pred cccccccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 614 ADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 614 a~~lfs~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
+..+|-...+ ...+|-++-|+|+|||+++|-
T Consensus 95 ~~~~l~~~~d----~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 95 SNAALQWVPE----HADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred EehhhhhCCC----HHHHHHHHHHhCCCCcEEEEE
Confidence 9998876543 245788999999999999985
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.0022 Score=66.08 Aligned_cols=114 Identities=23% Similarity=0.314 Sum_probs=61.1
Q ss_pred HHHHHHHHHhhhcccCCCCCCeeEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhcc----ccc--hhhccc
Q 044932 526 RHWKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDR----GLV--GIYHDW 598 (689)
Q Consensus 526 ~~W~~~v~~~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~R----GLi--g~yhdw 598 (689)
+.|++.+.+ .. ....+. .|+|+.+|+|-++..|...-----.|+-++-. +-|.+.-.| |+. =..+.=
T Consensus 33 ~~wr~~~~~-~~---~~~~g~--~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~d 106 (233)
T PF01209_consen 33 RRWRRKLIK-LL---GLRPGD--RVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGD 106 (233)
T ss_dssp ----SHHHH-HH---T--S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-B
T ss_pred HHHHHHHHh-cc---CCCCCC--EEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcC
Confidence 689987764 22 222232 79999999999988886531111134444432 444433332 332 222233
Q ss_pred cCCCCCCCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 599 CESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 599 ce~f~typrTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
.|.+|.-..|||.|=....|-... + ..-.|-||=|||||||.++|=|
T Consensus 107 a~~lp~~d~sfD~v~~~fglrn~~---d-~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 107 AEDLPFPDNSFDAVTCSFGLRNFP---D-RERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp TTB--S-TT-EEEEEEES-GGG-S---S-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHhcCCCCceeEEEHHhhHHhhC---C-HHHHHHHHHHHcCCCeEEEEee
Confidence 677887789999998776665543 4 3567899999999999988765
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.029 Score=62.50 Aligned_cols=103 Identities=19% Similarity=0.119 Sum_probs=66.1
Q ss_pred CCeEEEECCccchhHHHhh--cC-CeEEEEcCCcccHHHHHHHHHHc----CCCc---EEecCCC-CCCCC---CCCCcc
Q 044932 309 IRVVLEIGSADLSFVASLL--AK-EVLTLTVGLKDDLVDLAQVALER----GFPA---VVSPLGN-RRLPF---PSGVFD 374 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La--~~-~V~gmDIsp~D~seamlq~A~eR----GL~~---i~~~~dt-~~LPF---pD~SFD 374 (689)
+++|||+=|=||+|+.+.+ +. .|+.||+|. ..++.|.+. |+.. .+...|. .-|.. ....||
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~-----~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fD 292 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSK-----RALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFD 292 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccH-----HHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCccc
Confidence 5799999999999886554 44 699999875 455665553 5532 2223332 11111 234999
Q ss_pred eEEec-----cc-ccccc--ccHHHHHHHHHhccCCCcEEEEEcCCCchh
Q 044932 375 AIHCD-----GC-SITWH--AHGGKLLLEMNRILRPSGYFILSTKHDSIE 416 (689)
Q Consensus 375 lVhcs-----~c-li~W~--~d~~~aL~EI~RVLRPGG~fVIsdp~~~le 416 (689)
+|+.- +. ...|. .+...++....++|+|||.++++.-...+.
T Consensus 293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~ 342 (393)
T COG1092 293 LIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFS 342 (393)
T ss_pred EEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccC
Confidence 99862 10 00121 244578889999999999999998665443
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.0062 Score=60.91 Aligned_cols=122 Identities=16% Similarity=0.105 Sum_probs=72.6
Q ss_pred eeEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhh----hhcccc--chhhc-cccCCCC--CCCccchhhccc
Q 044932 547 IRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPV----IYDRGL--VGIYH-DWCESFG--TYPRSYDLLHAD 615 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~v----I~~RGL--ig~yh-dwce~f~--typrTyDLlHa~ 615 (689)
-.+|+|+++|.|.++..|... +- .+|+-++- +..+.. +...|+ |-+.+ |+.+.|+ .-+.+||+|-..
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~--~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPD--INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCC--ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 467999999999999888653 21 12333332 112211 111232 11122 2213344 236789998764
Q ss_pred cccc-----cccCCcCCccceeeeeccccccCcEEEEe-CchhhHHHHHHHHhhcceeEEEe
Q 044932 616 HLFS-----RLKSRCRQPVSIVVEMDRILRPGGWAIVR-DKVEILDPLEGILRSLHWEIRMT 671 (689)
Q Consensus 616 ~lfs-----~~~~~c~~~~~illEmDRILRP~G~~iir-D~~~~l~~v~~i~~~lrW~~~~~ 671 (689)
.... ....+.. ...+|-++-|+|+|||.++|. +...++..+...+..-.|.+++.
T Consensus 119 ~~~p~~~~~~~~~~~~-~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~~ 179 (202)
T PRK00121 119 FPDPWPKKRHHKRRLV-QPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVSE 179 (202)
T ss_pred CCCCCCCccccccccC-CHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccccc
Confidence 3221 1112223 256789999999999999886 67778888888887777877744
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.0052 Score=60.39 Aligned_cols=96 Identities=27% Similarity=0.334 Sum_probs=58.7
Q ss_pred eEEeecCCcchhHHHHhccCC-ceEEEeccCCC-CCchhhhhcc--ccchhh----ccccCCCCCCCccchhhccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQK-IWVMNVVPVHA-PDTLPVIYDR--GLVGIY----HDWCESFGTYPRSYDLLHADHLFS 619 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~-vWVMNvvp~~~-~~tL~vI~~R--GLig~y----hdwce~f~typrTyDLlHa~~lfs 619 (689)
..|+|+++|.|.++..|...- -- -+|+-++. ++.+...-.+ +.-... .|.. .++.-+.+||+||+..+|.
T Consensus 21 ~~vLdiG~G~G~~~~~~a~~~~~~-~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~v~~~~~~~ 98 (241)
T PRK08317 21 DRVLDVGCGPGNDARELARRVGPE-GRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDAD-GLPFPDGSFDAVRSDRVLQ 98 (241)
T ss_pred CEEEEeCCCCCHHHHHHHHhcCCC-cEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccc-cCCCCCCCceEEEEechhh
Confidence 479999999999998886531 00 02332222 2333333333 110111 1221 2233357999999999988
Q ss_pred cccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 620 RLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 620 ~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
...+. ..++-++-|+|+|||++++-+
T Consensus 99 ~~~~~----~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 99 HLEDP----ARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred ccCCH----HHHHHHHHHHhcCCcEEEEEe
Confidence 77653 446889999999999998754
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.013 Score=57.44 Aligned_cols=123 Identities=19% Similarity=0.228 Sum_probs=66.2
Q ss_pred eEEeecCCcchhHHHHhccC-----CceEEEeccCCCCCchhhhhccccchhhccccCCC-------CCCCccchhhccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-----KIWVMNVVPVHAPDTLPVIYDRGLVGIYHDWCESF-------GTYPRSYDLLHAD 615 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-----~vWVMNvvp~~~~~tL~vI~~RGLig~yhdwce~f-------~typrTyDLlHa~ 615 (689)
.+|+|+++|.|+++.++... .|+..=.-|. +. ..|+--+..|..+.. .+-+.++|+|=++
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~-----~~---~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM-----KP---IENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc-----cc---CCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 47999999999998766432 2443222221 10 012222223444321 0224578887654
Q ss_pred cccc---c-----ccCCcCCccceeeeeccccccCcEEEEe-Cc----hhhHHHHHHHHhhcceeEEEe-e----cCCCc
Q 044932 616 HLFS---R-----LKSRCRQPVSIVVEMDRILRPGGWAIVR-DK----VEILDPLEGILRSLHWEIRMT-Y----AQDKE 677 (689)
Q Consensus 616 ~lfs---~-----~~~~c~~~~~illEmDRILRP~G~~iir-D~----~~~l~~v~~i~~~lrW~~~~~-~----~~~~E 677 (689)
+... . ....+. +..+|-++-|+|+|||.+++- .. .+++..++. . -|.+.+. + ..+.|
T Consensus 106 ~~~~~~g~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~---~-~~~~~~~~~~~~~~~~~~ 180 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDL-VELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK---L-FEKVKVTKPQASRKRSAE 180 (188)
T ss_pred CCCCCCCCccccHHHHHHH-HHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh---h-hceEEEeCCCCCCcccce
Confidence 3211 1 111122 256788999999999999983 22 234444443 2 2555554 2 13468
Q ss_pred eEEEEE
Q 044932 678 GILCAQ 683 (689)
Q Consensus 678 ~iL~~~ 683 (689)
.+|||.
T Consensus 181 ~~~~~~ 186 (188)
T TIGR00438 181 VYIVAK 186 (188)
T ss_pred EEEEEe
Confidence 999985
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.037 Score=63.02 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=19.0
Q ss_pred HHHH-HHhccCCCcEEEEEcCCCch
Q 044932 392 LLLE-MNRILRPSGYFILSTKHDSI 415 (689)
Q Consensus 392 aL~E-I~RVLRPGG~fVIsdp~~~l 415 (689)
++.| ..+.|+|||++.+..|...+
T Consensus 177 ~f~~~~~~lL~~~G~~~~I~P~s~l 201 (524)
T TIGR02987 177 VFEEISLEIANKNGYVSIISPASWL 201 (524)
T ss_pred HHHHHHHHhcCCCCEEEEEEChHHh
Confidence 3445 58999999999999887654
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.047 Score=54.53 Aligned_cols=127 Identities=16% Similarity=0.203 Sum_probs=69.4
Q ss_pred CCeEEEECCccchhHHHhhcCC---eEEEEcCCcccHHHHHHH-HHHcCCCc--EEecCCC----CCCCCCCCCcceEEe
Q 044932 309 IRVVLEIGSADLSFVASLLAKE---VLTLTVGLKDDLVDLAQV-ALERGFPA--VVSPLGN----RRLPFPSGVFDAIHC 378 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~~---V~gmDIsp~D~seamlq~-A~eRGL~~--i~~~~dt----~~LPFpD~SFDlVhc 378 (689)
..+|||+=||+|.+|...+.++ |+.++.++.- ...++. +..-++.. .+...|. .++......||+|++
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a--~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKA--IKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHH--HHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHH--HHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 4689999999999998777654 8888887631 122222 22224443 2222332 112124689999987
Q ss_pred ccccccccccH--HHHHHHHH--hccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccccCceeEEEEE
Q 044932 379 DGCSITWHAHG--GKLLLEMN--RILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEISEMGVKIYQ 449 (689)
Q Consensus 379 s~cli~W~~d~--~~aL~EI~--RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~g~~~i~Iwq 449 (689)
-- |+.... ..+|.-+. .+|+++|.+++-.....-. . ...-+|..+.++. -|...+.+||
T Consensus 121 DP---PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~~~~-----~--~~~~~~~~~~~r~--yG~t~~~~~~ 183 (183)
T PF03602_consen 121 DP---PYAKGLYYEELLELLAENNLLNEDGLIIIEHSKKEDL-----P--ESPGNWELIKERK--YGDTKLSFYQ 183 (183)
T ss_dssp -----STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETTSSS--------SEETTEEEEEEEE--ETTEEEEEEE
T ss_pred CC---CcccchHHHHHHHHHHHCCCCCCCEEEEEEecCCCCC-----c--cCCCCEEEEEEec--CCCEEEEEEC
Confidence 42 233222 45666665 8999999999987543110 0 1123577665543 2555677765
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.023 Score=58.61 Aligned_cols=110 Identities=19% Similarity=0.218 Sum_probs=63.0
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhh----hhccccchhhccccCCCCCCCccchhhcccccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPV----IYDRGLVGIYHDWCESFGTYPRSYDLLHADHLFSRLK 622 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~v----I~~RGLig~yhdwce~f~typrTyDLlHa~~lfs~~~ 622 (689)
..|+|+++|.|..+.++.....- .|+-++- +.-+.. +-..|+-...+ +..-..+||+|.++-+...
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~~~~~-----~~~~~~~fD~Vvani~~~~-- 191 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVELNVY-----LPQGDLKADVIVANILANP-- 191 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCceEE-----EccCCCCcCEEEEcCcHHH--
Confidence 57999999999888777654321 1222221 111211 11223210001 1001117999987643321
Q ss_pred CCcCCccceeeeeccccccCcEEEEeCchh-hHHHHHHHHhhcceeEEEe
Q 044932 623 SRCRQPVSIVVEMDRILRPGGWAIVRDKVE-ILDPLEGILRSLHWEIRMT 671 (689)
Q Consensus 623 ~~c~~~~~illEmDRILRP~G~~iirD~~~-~l~~v~~i~~~lrW~~~~~ 671 (689)
+..++-++-|+|+|||++|+.+-.. -...+...+....+.....
T Consensus 192 -----~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 192 -----LLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred -----HHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEE
Confidence 2345678999999999999986433 4566777777777776544
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.0076 Score=59.67 Aligned_cols=132 Identities=18% Similarity=0.213 Sum_probs=76.0
Q ss_pred HHHHHHHHHhhhcccCCCCCCeeEEeecCCcchhHHHHhcc-CCceEEEeccCCCC-Cchh----hhhcccc--chhhcc
Q 044932 526 RHWKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQ-QKIWVMNVVPVHAP-DTLP----VIYDRGL--VGIYHD 597 (689)
Q Consensus 526 ~~W~~~v~~~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~-~~vWVMNvvp~~~~-~tL~----vI~~RGL--ig~yhd 597 (689)
..|++++-......-.+. =.+|+|+++|.|.++..|.. .+- ..|+-++.. +.+. .+...|+ |-+.+.
T Consensus 25 ~~~~~~~~d~i~~~~~~~---~~~vLDiGcGtG~~s~~la~~~~~--~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~ 99 (181)
T TIGR00138 25 EIWERHILDSLKLLEYLD---GKKVIDIGSGAGFPGIPLAIARPE--LKLTLLESNHKKVAFLREVKAELGLNNVEIVNG 99 (181)
T ss_pred HHHHHHHHHHHHHHHhcC---CCeEEEecCCCCccHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEec
Confidence 477777754321100122 25799999999987665542 111 123333322 2221 1222343 222221
Q ss_pred ccCCCCCCCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeCchhhHHHHHHHHhh-cceeEEEe
Q 044932 598 WCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGILRS-LHWEIRMT 671 (689)
Q Consensus 598 wce~f~typrTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~~~l~~v~~i~~~-lrW~~~~~ 671 (689)
=.+.+ ..+.+||+|-+.+ + .. +.+++-.+.|+|+|||.+++........++..+... -.|.....
T Consensus 100 d~~~~-~~~~~fD~I~s~~-~------~~-~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~ 165 (181)
T TIGR00138 100 RAEDF-QHEEQFDVITSRA-L------AS-LNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPL 165 (181)
T ss_pred chhhc-cccCCccEEEehh-h------hC-HHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEe
Confidence 12223 2467999998765 2 23 256677789999999999999888888888888744 34666544
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.0055 Score=62.98 Aligned_cols=94 Identities=18% Similarity=0.198 Sum_probs=60.9
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhh----hccccch---hhc-cccCCCCCCCccchhhcccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVI----YDRGLVG---IYH-DWCESFGTYPRSYDLLHADHLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI----~~RGLig---~yh-dwce~f~typrTyDLlHa~~lf 618 (689)
..|+|+++|.|.++..|..... +|+-++. +..|... -..|+.. +.+ |..+--+..+.+||+|.+.++|
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 4799999999999999987642 3444443 2333222 2234422 111 1111112356899999999998
Q ss_pred ccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 619 SRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 619 s~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
....+. ..+|-++-|+|+|||.++|-
T Consensus 123 ~~~~~~----~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 123 EWVADP----KSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HhhCCH----HHHHHHHHHHcCCCeEEEEE
Confidence 765433 45788999999999999874
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.0066 Score=60.35 Aligned_cols=93 Identities=18% Similarity=0.281 Sum_probs=58.3
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhh----hccccc--hhhccccCCCCCCCccchhhcccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVI----YDRGLV--GIYHDWCESFGTYPRSYDLLHADHLFSR 620 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI----~~RGLi--g~yhdwce~f~typrTyDLlHa~~lfs~ 620 (689)
..|+|+++|+|.++..|..+. + .|+-++.. +.+..+ -..|+- ..-.|. ..++ ++.+||+|-+..+|..
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g-~--~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~-~~~~-~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAG-Y--DVRAWDHNPASIASVLDMKARENLPLRTDAYDI-NAAA-LNEDYDFIFSTVVFMF 106 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCC-C--eEEEEECCHHHHHHHHHHHHHhCCCceeEeccc-hhcc-ccCCCCEEEEeccccc
Confidence 479999999999998887754 3 45555542 333221 223431 111122 1222 4678999999888864
Q ss_pred ccCCcCCccceeeeeccccccCcEEEE
Q 044932 621 LKSRCRQPVSIVVEMDRILRPGGWAIV 647 (689)
Q Consensus 621 ~~~~c~~~~~illEmDRILRP~G~~ii 647 (689)
.. .-. +..++-++.|.|+|||+++|
T Consensus 107 ~~-~~~-~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 107 LQ-AGR-VPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred CC-HHH-HHHHHHHHHHHhCCCcEEEE
Confidence 32 223 35788999999999998544
|
Part of a tellurite-reducing operon tehA and tehB |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.13 Score=57.97 Aligned_cols=101 Identities=13% Similarity=0.114 Sum_probs=67.5
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCc-EEecCCCCCCCC---CCCCcceEEec--
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPA-VVSPLGNRRLPF---PSGVFDAIHCD-- 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~-i~~~~dt~~LPF---pD~SFDlVhcs-- 379 (689)
+..+|||+=||.|.|+..|+.+ .|+|+++++..+ +++.+-|...|+.. .+...+++++.- ....||.|+.-
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV-~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPP 371 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAV-EAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPP 371 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHH-HHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCC
Confidence 3568999999999999999964 699999998543 34445555667664 344455444432 33588999863
Q ss_pred cccccccccHHHHHHHHHhccCCCcEEEEEcCCCch
Q 044932 380 GCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSI 415 (689)
Q Consensus 380 ~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~l 415 (689)
|.-.. ..++..+.+ ++|-..++||..|..+
T Consensus 372 R~G~~-----~~~lk~l~~-~~p~~IvYVSCNP~Tl 401 (432)
T COG2265 372 RAGAD-----REVLKQLAK-LKPKRIVYVSCNPATL 401 (432)
T ss_pred CCCCC-----HHHHHHHHh-cCCCcEEEEeCCHHHH
Confidence 22211 245555555 4788899999877544
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.0086 Score=64.49 Aligned_cols=93 Identities=16% Similarity=0.191 Sum_probs=57.8
Q ss_pred eEEeecCCcchhHHHHhccCC-ceEEEeccCCCC-Cchh---hhhc-ccc---chhhccccCCCCCCCccchhhcccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQK-IWVMNVVPVHAP-DTLP---VIYD-RGL---VGIYHDWCESFGTYPRSYDLLHADHLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~-vWVMNvvp~~~~-~tL~---vI~~-RGL---ig~yhdwce~f~typrTyDLlHa~~lf 618 (689)
+.|+|+++|.|.|+.+|.... -. |+=++.. ..+- .+.. .+. |-+.+.=-+.++. +.+||+|++.+++
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~---V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl 199 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKL---VVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVL 199 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCE---EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChh
Confidence 579999999999999887643 22 2223311 1110 0000 000 1111111234555 8999999999987
Q ss_pred ccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 619 SRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 619 s~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
-+.. + ...+|-++-|+|+|||.++|.
T Consensus 200 ~H~~---d-p~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 200 YHRR---S-PLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred hccC---C-HHHHHHHHHHhcCCCcEEEEE
Confidence 6533 4 356899999999999999986
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.066 Score=53.78 Aligned_cols=102 Identities=14% Similarity=0.083 Sum_probs=64.0
Q ss_pred cccCCCCCCeEEEECCccchhHHHhhcCC-----eEEEEcCCcccHHHHHHHHHHc--CCCcEEecCCCCCC-----CCC
Q 044932 302 DIEWGKNIRVVLEIGSADLSFVASLLAKE-----VLTLTVGLKDDLVDLAQVALER--GFPAVVSPLGNRRL-----PFP 369 (689)
Q Consensus 302 ~l~~G~~~R~VLDVGCGtGsfaa~La~~~-----V~gmDIsp~D~seamlq~A~eR--GL~~i~~~~dt~~L-----PFp 369 (689)
.+.+. .+..||++|.|||-++.+++.++ ++++..++. ......++ +.. +...++..| -+.
T Consensus 43 ~I~pe-sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~d-----F~~~L~~~~p~~~--ii~gda~~l~~~l~e~~ 114 (194)
T COG3963 43 VIDPE-SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPD-----FVCHLNQLYPGVN--IINGDAFDLRTTLGEHK 114 (194)
T ss_pred ccCcc-cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHH-----HHHHHHHhCCCcc--ccccchhhHHHHHhhcC
Confidence 34443 56789999999999999988764 677777663 22222222 221 112222222 267
Q ss_pred CCCcceEEeccccccccc-cHHHHHHHHHhccCCCcEEEEEcC
Q 044932 370 SGVFDAIHCDGCSITWHA-HGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 370 D~SFDlVhcs~cli~W~~-d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
+.-||.|+|..-+..+.. -.-.+|..+.--|++||-|+-..-
T Consensus 115 gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftY 157 (194)
T COG3963 115 GQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTY 157 (194)
T ss_pred CCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 889999998632222111 224678888999999999987653
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.57 Score=48.47 Aligned_cols=121 Identities=14% Similarity=0.032 Sum_probs=68.6
Q ss_pred CCeEEEECCccchhHHH----hhcCCeEEEEcCCcccHHHHHHHHH-HcCCCc-EEecCCCCCCCCCCCC-cceEEeccc
Q 044932 309 IRVVLEIGSADLSFVAS----LLAKEVLTLTVGLKDDLVDLAQVAL-ERGFPA-VVSPLGNRRLPFPSGV-FDAIHCDGC 381 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~----La~~~V~gmDIsp~D~seamlq~A~-eRGL~~-i~~~~dt~~LPFpD~S-FDlVhcs~c 381 (689)
..+++|||.|.|-=|.- ..+.+|+-+|-... --+.++.+. +-|++. .+...-++.+.- +.. ||+|+|-.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~K--k~~FL~~~~~eL~L~nv~i~~~RaE~~~~-~~~~~D~vtsRA- 143 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGK--KIAFLREVKKELGLENVEIVHGRAEEFGQ-EKKQYDVVTSRA- 143 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCch--HHHHHHHHHHHhCCCCeEEehhhHhhccc-ccccCcEEEeeh-
Confidence 47899999999964432 23445777775443 124454443 457773 333333333321 122 99998642
Q ss_pred cccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeec
Q 044932 382 SITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKT 437 (689)
Q Consensus 382 li~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~ 437 (689)
+- ....++.=....||+||++++.--....+...+.+......++.......
T Consensus 144 va----~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~ 195 (215)
T COG0357 144 VA----SLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFS 195 (215)
T ss_pred cc----chHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEE
Confidence 21 22244444567899999886544333334445567777777777665443
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.16 Score=55.75 Aligned_cols=117 Identities=15% Similarity=0.246 Sum_probs=66.6
Q ss_pred CCCeEEEECCccchhH--HHhhc-CCeEEEEcCCcccHHHHHHHHHHc----CCCcEEecC--CCCCCCCCCCCcceEEe
Q 044932 308 NIRVVLEIGSADLSFV--ASLLA-KEVLTLTVGLKDDLVDLAQVALER----GFPAVVSPL--GNRRLPFPSGVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfa--a~La~-~~V~gmDIsp~D~seamlq~A~eR----GL~~i~~~~--dt~~LPFpD~SFDlVhc 378 (689)
..+.|||+|||.|.+. ++.++ +.|.++..+ .|.+.|+.. .+...+.++ -.+.+-+| ...|+|++
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS------~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviIS 249 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS------EMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIIS 249 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehh------HHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEe
Confidence 4689999999999754 33333 468888754 466666543 233223322 23566677 78999986
Q ss_pred ccc-cccccccHHHHHHHHHhccCCCcEEEEEcCC----CchhHHHHHHHHHHhccee
Q 044932 379 DGC-SITWHAHGGKLLLEMNRILRPSGYFILSTKH----DSIEEEEALTTLTASICWN 431 (689)
Q Consensus 379 s~c-li~W~~d~~~aL~EI~RVLRPGG~fVIsdp~----~~le~~~~ie~La~~l~W~ 431 (689)
--. .+-..+.......-.+|-|+|.|..+=.... ++-.++-.++...++.-|-
T Consensus 250 EPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWy 307 (517)
T KOG1500|consen 250 EPMGYMLVNERMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWY 307 (517)
T ss_pred ccchhhhhhHHHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhh
Confidence 421 1111222233444567999999987643211 1222333455556666664
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.017 Score=62.44 Aligned_cols=94 Identities=13% Similarity=0.049 Sum_probs=57.3
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCCC-chhh-hhcc------ccchhhccccCCCCCCCccchhhccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAPD-TLPV-IYDR------GLVGIYHDWCESFGTYPRSYDLLHADHLFS 619 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~~-tL~v-I~~R------GLig~yhdwce~f~typrTyDLlHa~~lfs 619 (689)
+.|+|.++|.|.|+.+|.....- .|+-++... -+.. -+-| +.+.+..-=-+.++. +.+||+|-+.++|-
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gvL~ 199 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGVLY 199 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcchhh
Confidence 68999999999998888765421 234333221 1100 0011 111111111123333 34899999999886
Q ss_pred cccCCcCCccceeeeeccccccCcEEEEe
Q 044932 620 RLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 620 ~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
+.. + +.++|-||-|+|||||.++|.
T Consensus 200 H~~---d-p~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 200 HRK---S-PLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred ccC---C-HHHHHHHHHHhcCCCCEEEEE
Confidence 643 4 367899999999999999985
|
Known examples to date are restricted to the proteobacteria. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.1 Score=56.63 Aligned_cols=110 Identities=22% Similarity=0.256 Sum_probs=62.0
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHH----hhcC----CeEEEEcCCcccHHHHHHHHHHc----CCCcE
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVAS----LLAK----EVLTLTVGLKDDLVDLAQVALER----GFPAV 357 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~----La~~----~V~gmDIsp~D~seamlq~A~eR----GL~~i 357 (689)
+.+...|.+.++ ...+++|+|||.|.=+.. |... ..+++|||. ++++.+.++ .++.+
T Consensus 64 ~~~~~~Ia~~i~------~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~-----~~L~~a~~~L~~~~~p~l 132 (319)
T TIGR03439 64 KKHSSDIAASIP------SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSR-----SELQRTLAELPLGNFSHV 132 (319)
T ss_pred HHHHHHHHHhcC------CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCH-----HHHHHHHHhhhhccCCCe
Confidence 345555555544 235799999999974433 3222 367788775 455554432 23321
Q ss_pred -E----ecCC-C-CCCCC--CCCCcceEEecccccc-cc-ccHHHHHHHHHh-ccCCCcEEEEEc
Q 044932 358 -V----SPLG-N-RRLPF--PSGVFDAIHCDGCSIT-WH-AHGGKLLLEMNR-ILRPSGYFILST 410 (689)
Q Consensus 358 -~----~~~d-t-~~LPF--pD~SFDlVhcs~cli~-W~-~d~~~aL~EI~R-VLRPGG~fVIsd 410 (689)
+ +.+. . ..||= ......+++..+..+. +. .....+|..+++ .|+|||.|+|..
T Consensus 133 ~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 133 RCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred EEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 1 1111 1 11321 1235677776543333 11 233578899999 999999999974
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.0095 Score=65.68 Aligned_cols=101 Identities=19% Similarity=0.311 Sum_probs=62.6
Q ss_pred cCCCCCCeeEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhhhhcc--ccchhhccccCCCCCCCccchhhccc
Q 044932 540 LGIDWSKIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPVIYDR--GLVGIYHDWCESFGTYPRSYDLLHAD 615 (689)
Q Consensus 540 l~~~~~~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~vI~~R--GLig~yhdwce~f~typrTyDLlHa~ 615 (689)
++++++ ..|+|+++|.|++|..|... ++ .|+-++- +.-+...-+| |+ ++ +=.+..+...+.+||+|.+.
T Consensus 163 l~l~~g--~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~~l-~v-~~~~~D~~~l~~~fD~Ivs~ 235 (383)
T PRK11705 163 LQLKPG--MRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCAGL-PV-EIRLQDYRDLNGQFDRIVSV 235 (383)
T ss_pred hCCCCC--CEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhccC-eE-EEEECchhhcCCCCCEEEEe
Confidence 455544 36999999999999888753 43 2333332 2333333332 22 11 10112222336789999999
Q ss_pred cccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 616 HLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 616 ~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
++|..... -. ...++-++.|+|+|||.++|.+
T Consensus 236 ~~~ehvg~-~~-~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 236 GMFEHVGP-KN-YRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred CchhhCCh-HH-HHHHHHHHHHHcCCCcEEEEEE
Confidence 88876532 22 2467889999999999999863
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.064 Score=55.22 Aligned_cols=72 Identities=14% Similarity=0.189 Sum_probs=45.5
Q ss_pred CCCCCcceEEecc--cc-cc------c-----cccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEE
Q 044932 368 FPSGVFDAIHCDG--CS-IT------W-----HAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 368 FpD~SFDlVhcs~--cl-i~------W-----~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v 433 (689)
+||+|+|+|+..- .. .. + .+-....+.|+.|||||||.+++........ .+..+++..+|...
T Consensus 16 lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~~---~~~~al~~~GF~l~ 92 (227)
T PRK13699 16 FPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVD---RFMAAWKNAGFSVV 92 (227)
T ss_pred CCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccHH---HHHHHHHHCCCEEe
Confidence 6788888887641 10 00 0 0002478899999999999998765433222 24455677788764
Q ss_pred EeeccccCceeEEEEEeCC
Q 044932 434 AHKTDEISEMGVKIYQKPE 452 (689)
Q Consensus 434 ~~~~~~~g~~~i~IwqKp~ 452 (689)
. ..||.|+.
T Consensus 93 ~----------~IiW~K~~ 101 (227)
T PRK13699 93 G----------HLVFTKNY 101 (227)
T ss_pred e----------EEEEECCC
Confidence 3 36899864
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.067 Score=54.84 Aligned_cols=100 Identities=14% Similarity=0.153 Sum_probs=58.6
Q ss_pred CCCeEEEECCccchh--HHHhhcC-CeEEEEcCCcccHHHHHHH-HHHcCCCcEEecCCCCCCCCCCCCcceEEeccccc
Q 044932 308 NIRVVLEIGSADLSF--VASLLAK-EVLTLTVGLKDDLVDLAQV-ALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 308 ~~R~VLDVGCGtGsf--aa~La~~-~V~gmDIsp~D~seamlq~-A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
..++|||+|.|.|.. ++++++. .|+..|+.|.- ...+.. |...|+...+... .+-+.+..||+|+.+...+
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~--~~ai~lNa~angv~i~~~~~---d~~g~~~~~Dl~LagDlfy 153 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWL--EQAIRLNAAANGVSILFTHA---DLIGSPPAFDLLLAGDLFY 153 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHH--HHHhhcchhhccceeEEeec---cccCCCcceeEEEeeceec
Confidence 357999999999964 4445443 48888988741 122222 3334544333322 2224779999999875544
Q ss_pred cccccHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 384 TWHAHGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 384 ~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
. +.....++.=..|+...|-.+++.+|+.
T Consensus 154 ~-~~~a~~l~~~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 154 N-HTEADRLIPWKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred C-chHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 4 2233456664445555555666667653
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.012 Score=58.19 Aligned_cols=97 Identities=18% Similarity=0.210 Sum_probs=58.0
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhcccc--chhhccccCCCCCCCccchhhccccccccccCC
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDRGL--VGIYHDWCESFGTYPRSYDLLHADHLFSRLKSR 624 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~RGL--ig~yhdwce~f~typrTyDLlHa~~lfs~~~~~ 624 (689)
..|||.++|.|.|...|..... -..|+-++. +.-+.....+.- +-.++.=.+.++..+.+||+|.+.++|....
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~-- 112 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD-- 112 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc--
Confidence 5699999999999998875420 000122221 111111111100 0111111234455678999999998886543
Q ss_pred cCCccceeeeeccccccCcEEEEeC
Q 044932 625 CRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 625 c~~~~~illEmDRILRP~G~~iirD 649 (689)
+ ...+|-++-|+|+|||++++..
T Consensus 113 -~-~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 113 -D-LSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred -C-HHHHHHHHHHHcCCCcEEEEEe
Confidence 3 3568999999999999999864
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.089 Score=54.77 Aligned_cols=135 Identities=17% Similarity=0.176 Sum_probs=74.8
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc-----C----CCc
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER-----G----FPA 356 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR-----G----L~~ 356 (689)
..|.+.|.. +|.+.. ...++||=||-|.|+.+..++.. .|++++++| ..++.|++- . -..
T Consensus 60 ~~y~e~l~h-~~~~~~-~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~-----~Vv~~a~~~f~~~~~~~~d~r~ 132 (246)
T PF01564_consen 60 FIYHEMLVH-PPLLLH-PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDP-----EVVELARKYFPEFSEGLDDPRV 132 (246)
T ss_dssp HHHHHHHHH-HHHHHS-SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-H-----HHHHHHHHHTHHHHTTGGSTTE
T ss_pred HHHHHHHhh-hHhhcC-CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecCh-----HHHHHHHHhchhhccccCCCce
Confidence 466665543 232221 25789999999999999888864 488888876 345555432 1 112
Q ss_pred EEecCCCCC-CC-CCCCCcceEEeccccccccc----cHHHHHHHHHhccCCCcEEEEEcCCCchh--HHHHHHHHHHhc
Q 044932 357 VVSPLGNRR-LP-FPSGVFDAIHCDGCSITWHA----HGGKLLLEMNRILRPSGYFILSTKHDSIE--EEEALTTLTASI 428 (689)
Q Consensus 357 i~~~~dt~~-LP-FpD~SFDlVhcs~cli~W~~----d~~~aL~EI~RVLRPGG~fVIsdp~~~le--~~~~ie~La~~l 428 (689)
.+...|+.. |- ...+.||+|+.-... +... --..++..+.|+|+|||.+++........ ....+...++..
T Consensus 133 ~i~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~ 211 (246)
T PF01564_consen 133 RIIIGDGRKFLKETQEEKYDVIIVDLTD-PDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSV 211 (246)
T ss_dssp EEEESTHHHHHHTSSST-EEEEEEESSS-TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTT
T ss_pred EEEEhhhHHHHHhccCCcccEEEEeCCC-CCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHh
Confidence 233333211 00 122289999863211 1111 12478999999999999999986433222 223344445554
Q ss_pred ceeE
Q 044932 429 CWNI 432 (689)
Q Consensus 429 ~W~~ 432 (689)
.-.+
T Consensus 212 F~~v 215 (246)
T PF01564_consen 212 FPQV 215 (246)
T ss_dssp SSEE
T ss_pred CCce
Confidence 4433
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.028 Score=55.81 Aligned_cols=143 Identities=13% Similarity=0.133 Sum_probs=76.8
Q ss_pred hhhh--hhHHHHHHHHHhhhcccCCCCCCeeEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhh----hccccc
Q 044932 520 KLSS--DTRHWKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVI----YDRGLV 592 (689)
Q Consensus 520 ~f~~--D~~~W~~~v~~~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI----~~RGLi 592 (689)
.|.. +--.|+..|..--+..+.+..+ -.|+||++|.|.|+.++...-----+|+-++. +.-+..+ -.-|+.
T Consensus 14 ~~~~~~~~~~t~~~~r~~~l~~l~~~~~--~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~ 91 (198)
T PRK00377 14 EFERDEEIPMTKEEIRALALSKLRLRKG--DMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL 91 (198)
T ss_pred HHccCCCCCCCHHHHHHHHHHHcCCCCc--CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC
Confidence 4543 3347777776422333444433 36999999999997765321000012333332 1122211 111221
Q ss_pred h---h-hccccCCCCCCCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEe-CchhhHHHHHHHHhhccee
Q 044932 593 G---I-YHDWCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVR-DKVEILDPLEGILRSLHWE 667 (689)
Q Consensus 593 g---~-yhdwce~f~typrTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iir-D~~~~l~~v~~i~~~lrW~ 667 (689)
. + -.|..+.++.++-.||+|...+ .... +..+|-++-|+|+|||.+++. -..+.+.++...++.+.++
T Consensus 92 ~~v~~~~~d~~~~l~~~~~~~D~V~~~~------~~~~-~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~ 164 (198)
T PRK00377 92 NNIVLIKGEAPEILFTINEKFDRIFIGG------GSEK-LKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFN 164 (198)
T ss_pred CCeEEEEechhhhHhhcCCCCCEEEECC------Cccc-HHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCC
Confidence 1 1 1233333334445688876543 1123 356788899999999999983 2455677777777766666
Q ss_pred EEEe
Q 044932 668 IRMT 671 (689)
Q Consensus 668 ~~~~ 671 (689)
..+.
T Consensus 165 ~~~~ 168 (198)
T PRK00377 165 LEIT 168 (198)
T ss_pred eEEE
Confidence 5544
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.013 Score=59.93 Aligned_cols=103 Identities=19% Similarity=0.296 Sum_probs=59.4
Q ss_pred hhcccCCCCCCeeEEeecCCcchhHHHHhccC-CceEEEeccCCCC-Cchhhhhcccc--chhhccccCCCCCCCccchh
Q 044932 536 YLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-DTLPVIYDRGL--VGIYHDWCESFGTYPRSYDL 611 (689)
Q Consensus 536 y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-~tL~vI~~RGL--ig~yhdwce~f~typrTyDL 611 (689)
++..+.+. .-.+|+|+++|.|.|+..|... +- -+|+=++-. .-+...-.+ + +.++..=.+.+ ..+.+||+
T Consensus 23 ll~~~~~~--~~~~vLDiGcG~G~~~~~la~~~~~--~~v~gvD~s~~~i~~a~~~-~~~~~~~~~d~~~~-~~~~~fD~ 96 (258)
T PRK01683 23 LLARVPLE--NPRYVVDLGCGPGNSTELLVERWPA--ARITGIDSSPAMLAEARSR-LPDCQFVEADIASW-QPPQALDL 96 (258)
T ss_pred HHhhCCCc--CCCEEEEEcccCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHh-CCCCeEEECchhcc-CCCCCccE
Confidence 34444443 3468999999999999888653 11 112222221 111111111 1 11111111122 13569999
Q ss_pred hccccccccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 612 LHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 612 lHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
|+++..|....+ ...+|-+|-|+|+|||.+++.
T Consensus 97 v~~~~~l~~~~d----~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 97 IFANASLQWLPD----HLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred EEEccChhhCCC----HHHHHHHHHHhcCCCcEEEEE
Confidence 999998865443 245789999999999999985
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.0075 Score=53.07 Aligned_cols=96 Identities=24% Similarity=0.347 Sum_probs=56.4
Q ss_pred EEeecCCcchhHHHHhcc--CCceEEEeccCCC-CCchhhhh----ccccchhh----ccccCCCCCCCccchhhcccc-
Q 044932 549 NVMDMKSIYGGFAAALAQ--QKIWVMNVVPVHA-PDTLPVIY----DRGLVGIY----HDWCESFGTYPRSYDLLHADH- 616 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~--~~vWVMNvvp~~~-~~tL~vI~----~RGLig~y----hdwce~f~typrTyDLlHa~~- 616 (689)
.|+|+++|.|.++.+|.. ...= |+-++- |..+...- ..++-.-. .|+ ......+..||+|.+.+
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~~ 79 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFPGAR---VVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSGF 79 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTSE---EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECSG
T ss_pred EEEEEcCcCCHHHHHHHhcCCCCE---EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECCC
Confidence 589999999999999987 3322 333332 22222211 12222222 233 22245555699999999
Q ss_pred ccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 617 LFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 617 lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
.+..+.+... ...+|=.+-+.|+|||+++|.+
T Consensus 80 ~~~~~~~~~~-~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDE-RRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHH-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhH-HHHHHHHHHHhcCCCcEEEEEE
Confidence 2222222222 2445777889999999999974
|
... |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.011 Score=62.09 Aligned_cols=92 Identities=21% Similarity=0.316 Sum_probs=59.0
Q ss_pred EEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchh----hhhccccchhhccccCCCC--CCCccchhhccccccccc
Q 044932 549 NVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLP----VIYDRGLVGIYHDWCESFG--TYPRSYDLLHADHLFSRL 621 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~----vI~~RGLig~yhdwce~f~--typrTyDLlHa~~lfs~~ 621 (689)
+|+|+++|.|.+|..|..... .|+-++.. ..+. .+...|+ .+ +-.+..+. ..+..||+|-+..+|...
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l-~v-~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENL-NI-RTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCC-ce-EEEEechhcccccCCccEEEEcchhhhC
Confidence 699999999999998877652 34444432 2222 2233455 21 11121121 137899999999888654
Q ss_pred cCCcCCccceeeeeccccccCcEEEE
Q 044932 622 KSRCRQPVSIVVEMDRILRPGGWAIV 647 (689)
Q Consensus 622 ~~~c~~~~~illEmDRILRP~G~~ii 647 (689)
. .-. +..++-+|-|+|+|||++++
T Consensus 198 ~-~~~-~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 198 N-RER-IPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred C-HHH-HHHHHHHHHHhcCCCcEEEE
Confidence 3 334 36789999999999999554
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.029 Score=56.09 Aligned_cols=123 Identities=15% Similarity=0.205 Sum_probs=75.6
Q ss_pred CCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHcCCCcEEec-------CCCCCCCCCCCCcceE
Q 044932 309 IRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALERGFPAVVSP-------LGNRRLPFPSGVFDAI 376 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eRGL~~i~~~-------~dt~~LPFpD~SFDlV 376 (689)
++.||++|.|.-+++..|... .|+..|-.. .+...++.+.-++....+.. .-+.++-...++||+|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne--~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiI 107 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNE--ESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDII 107 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCH--HHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEE
Confidence 478999999987777666542 466665432 33344454444431111110 0111222345799999
Q ss_pred EeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEe
Q 044932 377 HCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 377 hcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~ 435 (689)
+|+.|+.. .+....++.-|.+.|||.|..+++.|..-..- +.+...+...+|.+...
T Consensus 108 laADClFf-dE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL-~kF~de~~~~gf~v~l~ 164 (201)
T KOG3201|consen 108 LAADCLFF-DEHHESLVDTIKSLLRPSGRALLFSPRRGQSL-QKFLDEVGTVGFTVCLE 164 (201)
T ss_pred EeccchhH-HHHHHHHHHHHHHHhCcccceeEecCcccchH-HHHHHHHHhceeEEEec
Confidence 99999753 55667888999999999999999988632211 12445566667766544
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.023 Score=60.04 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=62.7
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhh----ccccchhhccccC-CCCCCCccchhhccccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIY----DRGLVGIYHDWCE-SFGTYPRSYDLLHADHLFSRL 621 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~----~RGLig~yhdwce-~f~typrTyDLlHa~~lfs~~ 621 (689)
..|||+++|.|.++.++...+.. .|+-++-. ..+.... ..|+-......+. .....+..||+|.++.+...
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~~--~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~~- 237 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGAA--KVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAEV- 237 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHHH-
Confidence 57999999999988777654321 23333321 2221111 1122112222222 22234568999999765432
Q ss_pred cCCcCCccceeeeeccccccCcEEEEeCch-hhHHHHHHHHhhcceeE
Q 044932 622 KSRCRQPVSIVVEMDRILRPGGWAIVRDKV-EILDPLEGILRSLHWEI 668 (689)
Q Consensus 622 ~~~c~~~~~illEmDRILRP~G~~iirD~~-~~l~~v~~i~~~lrW~~ 668 (689)
+..++-++-|+|+|||++++..-. +-...|...+++. |+.
T Consensus 238 ------l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~ 278 (288)
T TIGR00406 238 ------IKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTV 278 (288)
T ss_pred ------HHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Cce
Confidence 245677899999999999997532 2334445544444 654
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.21 Score=59.45 Aligned_cols=122 Identities=20% Similarity=0.194 Sum_probs=69.8
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhh----hccccch-----hhccccCCCCCCCccchhhccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVI----YDRGLVG-----IYHDWCESFGTYPRSYDLLHADHL 617 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI----~~RGLig-----~yhdwce~f~typrTyDLlHa~~l 617 (689)
+.|+|+.+|+|+|+.++.....- .|+-++.. ..|... ..-|+-+ +-.|..+-+..+.++||||=.+-=
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 57999999999999888765432 14444432 222211 1112210 112332222234678999866521
Q ss_pred cccccCC-------cCCccceeeeeccccccCcEEEEeCchhhHHHHHHHHhhcceeEEEe
Q 044932 618 FSRLKSR-------CRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGILRSLHWEIRMT 671 (689)
Q Consensus 618 fs~~~~~-------c~~~~~illEmDRILRP~G~~iirD~~~~l~~v~~i~~~lrW~~~~~ 671 (689)
+-.-... ......++-..=|+|+|||.+++--...-+......+..-.+.+++.
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i 678 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEI 678 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEE
Confidence 1100000 00013455556789999999999876666666677777778888776
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.013 Score=57.50 Aligned_cols=96 Identities=22% Similarity=0.248 Sum_probs=57.0
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhhhhccc-----cchhhccccCCCCCCCccchhhcccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPVIYDRG-----LVGIYHDWCESFGTYPRSYDLLHADHLFSR 620 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~vI~~RG-----Lig~yhdwce~f~typrTyDLlHa~~lfs~ 620 (689)
.+|+|+++|.|.++.++... +. --+++-++. +..+..+-.+. +--+..|..+ ++.-+.+||+|+..+.+..
T Consensus 41 ~~vldiG~G~G~~~~~~~~~~~~-~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~i~~~~~~~~ 118 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKSAPD-RGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA-LPFEDNSFDAVTIAFGLRN 118 (223)
T ss_pred CeEEEeCCCCChhHHHHHHhcCC-CceEEEEECCHHHHHHHHHHhccCCCceEEecchhc-CCCCCCcEEEEEEeeeeCC
Confidence 57999999999999888643 11 001222222 12223332222 1111222222 3333568999998777654
Q ss_pred ccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 621 LKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 621 ~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
.. . +..+|-++-++|+|||++++-+
T Consensus 119 ~~---~-~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 119 VT---D-IQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred cc---c-HHHHHHHHHHHcCCCcEEEEEE
Confidence 33 3 2567889999999999999864
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.22 Score=51.20 Aligned_cols=96 Identities=15% Similarity=0.164 Sum_probs=55.3
Q ss_pred CCCeEEEECCccchhHHHhhc---C--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCC---C-CCC--CCCCCCcceE
Q 044932 308 NIRVVLEIGSADLSFVASLLA---K--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLG---N-RRL--PFPSGVFDAI 376 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~---~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~d---t-~~L--PFpD~SFDlV 376 (689)
...+|+|+||-.|+|+..++. . .|+++|+.|.+..+ |+..+...+- + ..| -+....+|+|
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~---------~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV 115 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIP---------GVIFLQGDITDEDTLEKLLEALGGAPVDVV 115 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCC---------CceEEeeeccCccHHHHHHHHcCCCCcceE
Confidence 357899999999999876654 2 28999998854422 2222222111 0 000 1344457999
Q ss_pred Eecc---cccccccc------HHH-HHHHHHhccCCCcEEEEEcCC
Q 044932 377 HCDG---CSITWHAH------GGK-LLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 377 hcs~---cli~W~~d------~~~-aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+|-. ..-+|.-| ... ++.=..++|+|||.|++..-.
T Consensus 116 ~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 116 LSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred EecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 8631 11122222 122 333345699999999998643
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.11 Score=57.42 Aligned_cols=95 Identities=11% Similarity=0.060 Sum_probs=61.1
Q ss_pred CeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHcCCC-cEEecCCCCCC-CCCCCCcceEEecccc
Q 044932 310 RVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALERGFP-AVVSPLGNRRL-PFPSGVFDAIHCDGCS 382 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eRGL~-~i~~~~dt~~L-PFpD~SFDlVhcs~cl 382 (689)
-+|||+-||+|.++.+++.. .|+++|++|.-. +.+.+-+...++. ..+...|+..+ ......||+|..--
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av-~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAV-ESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHH-HHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--
Confidence 37999999999999887753 389999988421 2222223333443 22333343222 11235799997532
Q ss_pred ccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 383 ITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 383 i~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
+ ..+..+|..+.+.+++||+++++.
T Consensus 123 --f-Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 --F-GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred --C-CCcHHHHHHHHHhcccCCEEEEEe
Confidence 1 234578999999999999999984
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.027 Score=58.86 Aligned_cols=112 Identities=23% Similarity=0.270 Sum_probs=75.2
Q ss_pred hHHHHHHHHHhhhcccCCCCCCeeEEeecCCcchhHHHHhccCC--ceEEEeccCCC-CCchhhhhccc----cchh--h
Q 044932 525 TRHWKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQK--IWVMNVVPVHA-PDTLPVIYDRG----LVGI--Y 595 (689)
Q Consensus 525 ~~~W~~~v~~~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~~--vWVMNvvp~~~-~~tL~vI~~RG----Lig~--y 595 (689)
...|++.+-. .+++.+| -+|||..+|+|=+|.++.+.- -+ |+=++- ++-|.+--+|- +.++ -
T Consensus 36 ~~~Wr~~~i~----~~~~~~g--~~vLDva~GTGd~a~~~~k~~g~g~---v~~~D~s~~ML~~a~~k~~~~~~~~i~fv 106 (238)
T COG2226 36 HRLWRRALIS----LLGIKPG--DKVLDVACGTGDMALLLAKSVGTGE---VVGLDISESMLEVAREKLKKKGVQNVEFV 106 (238)
T ss_pred hHHHHHHHHH----hhCCCCC--CEEEEecCCccHHHHHHHHhcCCce---EEEEECCHHHHHHHHHHhhccCccceEEE
Confidence 3689988753 1222222 359999999999999997642 23 333332 24454444332 2221 2
Q ss_pred ccccCCCCCCCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 596 HDWCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 596 hdwce~f~typrTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
+-==|.+|+-++|+|++=.+..|-... + +.-.|=||-|||+|||.+++=+
T Consensus 107 ~~dAe~LPf~D~sFD~vt~~fglrnv~---d-~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 107 VGDAENLPFPDNSFDAVTISFGLRNVT---D-IDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred EechhhCCCCCCccCEEEeeehhhcCC---C-HHHHHHHHHHhhcCCeEEEEEE
Confidence 444578999999999998887776654 4 3668999999999999877765
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.014 Score=58.75 Aligned_cols=94 Identities=19% Similarity=0.296 Sum_probs=59.9
Q ss_pred EEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhc----cccchhh--ccccCCCCCCCccchhhccccccccc
Q 044932 549 NVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYD----RGLVGIY--HDWCESFGTYPRSYDLLHADHLFSRL 621 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~----RGLig~y--hdwce~f~typrTyDLlHa~~lfs~~ 621 (689)
.|||+++|.|.|+..|.... .+|+=++.. +.+...-. -|+...+ .++.+-....+-+||+|.+.++|...
T Consensus 51 ~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~ 127 (233)
T PRK05134 51 RVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV 127 (233)
T ss_pred eEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc
Confidence 49999999999998887654 244444432 22221111 1321222 22332222244689999999888866
Q ss_pred cCCcCCccceeeeeccccccCcEEEEeC
Q 044932 622 KSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 622 ~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
.+. ..+|-.+.|+|+|||.+++..
T Consensus 128 ~~~----~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 128 PDP----ASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred CCH----HHHHHHHHHHcCCCcEEEEEe
Confidence 543 456889999999999999874
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.029 Score=57.28 Aligned_cols=105 Identities=16% Similarity=0.216 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhhcccCCCCCCeeEEeecCCcchhHHHHhccC-CceEEEeccCCCC-CchhhhhccccchhhccccCCCC
Q 044932 526 RHWKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-DTLPVIYDRGLVGIYHDWCESFG 603 (689)
Q Consensus 526 ~~W~~~v~~~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-~tL~vI~~RGLig~yhdwce~f~ 603 (689)
..|++.+-+.+...+. . -..|||..+|+|-++..|... +. +|+-++-. +-|.+--.++ ...+.-.+.++
T Consensus 35 ~~wr~~~~~~l~~~~~-~---~~~VLDlGcGtG~~~~~l~~~~~~---~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~lp 105 (226)
T PRK05785 35 VRWRAELVKTILKYCG-R---PKKVLDVAAGKGELSYHFKKVFKY---YVVALDYAENMLKMNLVAD--DKVVGSFEALP 105 (226)
T ss_pred HHHHHHHHHHHHHhcC-C---CCeEEEEcCCCCHHHHHHHHhcCC---EEEEECCCHHHHHHHHhcc--ceEEechhhCC
Confidence 5688876542322111 1 247999999999999888765 22 45555543 3333322232 22345567777
Q ss_pred CCCccchhhccccccccccCCcCCccceeeeeccccccCc
Q 044932 604 TYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGG 643 (689)
Q Consensus 604 typrTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G 643 (689)
.-+.+||+|-+...+-... + ++..|-||-|+|||.+
T Consensus 106 ~~d~sfD~v~~~~~l~~~~---d-~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 106 FRDKSFDVVMSSFALHASD---N-IEKVIAEFTRVSRKQV 141 (226)
T ss_pred CCCCCEEEEEecChhhccC---C-HHHHHHHHHHHhcCce
Confidence 7789999999987765433 4 3568999999999953
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.011 Score=59.89 Aligned_cols=101 Identities=21% Similarity=0.329 Sum_probs=65.4
Q ss_pred CCCCCeeEEeecCCcchhHHHHhcc-CCceEEEeccCCCCCchhhhhccccchhhccccCCCCCCCccchhhcccccccc
Q 044932 542 IDWSKIRNVMDMKSIYGGFAAALAQ-QKIWVMNVVPVHAPDTLPVIYDRGLVGIYHDWCESFGTYPRSYDLLHADHLFSR 620 (689)
Q Consensus 542 ~~~~~iRNvmDMna~~GgFAAal~~-~~vWVMNvvp~~~~~tL~vI~~RGLig~yhdwce~f~typrTyDLlHa~~lfs~ 620 (689)
.++..++.|+|.++|.|.|++++.. .|=. .++-.+-|..+..+.... .+-.-=..-|.++|. ||++...++|..
T Consensus 96 ~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l--~~~v~Dlp~v~~~~~~~~--rv~~~~gd~f~~~P~-~D~~~l~~vLh~ 170 (241)
T PF00891_consen 96 FDFSGFKTVVDVGGGSGHFAIALARAYPNL--RATVFDLPEVIEQAKEAD--RVEFVPGDFFDPLPV-ADVYLLRHVLHD 170 (241)
T ss_dssp STTTTSSEEEEET-TTSHHHHHHHHHSTTS--EEEEEE-HHHHCCHHHTT--TEEEEES-TTTCCSS-ESEEEEESSGGG
T ss_pred ccccCccEEEeccCcchHHHHHHHHHCCCC--cceeeccHhhhhcccccc--ccccccccHHhhhcc-ccceeeehhhhh
Confidence 5677899999999999999999964 2311 122223333333222210 111111223577888 999999999999
Q ss_pred ccCC-cCCccceeeeeccccccC--cEEEEeCc
Q 044932 621 LKSR-CRQPVSIVVEMDRILRPG--GWAIVRDK 650 (689)
Q Consensus 621 ~~~~-c~~~~~illEmDRILRP~--G~~iirD~ 650 (689)
|.+. |. .||--+=+.|+|| |.|+|-|.
T Consensus 171 ~~d~~~~---~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 171 WSDEDCV---KILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp S-HHHHH---HHHHHHHHHSEECTTEEEEEEEE
T ss_pred cchHHHH---HHHHHHHHHhCCCCCCeEEEEee
Confidence 9864 54 4888899999999 99998864
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.76 Score=50.29 Aligned_cols=110 Identities=17% Similarity=0.170 Sum_probs=58.2
Q ss_pred eEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcE-EecCCCCCC----------------CCCCC
Q 044932 311 VVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAV-VSPLGNRRL----------------PFPSG 371 (689)
Q Consensus 311 ~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i-~~~~dt~~L----------------PFpD~ 371 (689)
.|||+-||+|.|+..|+.. .|+|+++++..+ ..+..-|...++... +..+++..+ .....
T Consensus 199 ~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av-~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 277 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAV-EDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSF 277 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHH-HHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCT
T ss_pred cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHH-HHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhhhc
Confidence 7999999999999999875 599999876422 233334445566543 222222111 12234
Q ss_pred CcceEEec--cccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEE
Q 044932 372 VFDAIHCD--GCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 372 SFDlVhcs--~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v 433 (689)
.||+|+.- |..+. ..++.-+. ++.=.++||.-|..+.. .+..|.+ +|++.
T Consensus 278 ~~d~vilDPPR~G~~-----~~~~~~~~---~~~~ivYvSCnP~tlaR--Dl~~L~~--~y~~~ 329 (352)
T PF05958_consen 278 KFDAVILDPPRAGLD-----EKVIELIK---KLKRIVYVSCNPATLAR--DLKILKE--GYKLE 329 (352)
T ss_dssp TESEEEE---TT-SC-----HHHHHHHH---HSSEEEEEES-HHHHHH--HHHHHHC--CEEEE
T ss_pred CCCEEEEcCCCCCch-----HHHHHHHh---cCCeEEEEECCHHHHHH--HHHHHhh--cCEEE
Confidence 67888652 22211 13333333 34568888877654422 2555544 67764
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.043 Score=55.23 Aligned_cols=116 Identities=22% Similarity=0.367 Sum_probs=68.0
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchh----hhhcccc--chhhccccCCCCCC-Cccchhhcccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLP----VIYDRGL--VGIYHDWCESFGTY-PRSYDLLHADHLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~----vI~~RGL--ig~yhdwce~f~ty-prTyDLlHa~~lf 618 (689)
..|+|+++|.|.|+.+|... +-+ +|+-++. +..+. .+-..|+ +-+++ +..+..+ +..||+|-++--|
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~--~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~--~d~~~~~~~~~fD~Vi~npPy 164 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDA--RVTAVDISPEALAVARKNAARLGLDNVTFLQ--SDWFEPLPGGKFDLIVSNPPY 164 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCeEEEEE--CchhccCcCCceeEEEECCCC
Confidence 36999999999999998764 211 2333332 12221 1122333 11222 2222333 4689999886544
Q ss_pred cccc------CCcC----------------CccceeeeeccccccCcEEEEeCchhhHHHHHHHHhhccee
Q 044932 619 SRLK------SRCR----------------QPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGILRSLHWE 667 (689)
Q Consensus 619 s~~~------~~c~----------------~~~~illEmDRILRP~G~~iirD~~~~l~~v~~i~~~lrW~ 667 (689)
.... ..+. ....++-++-|+|+|||.+++.-...-...++.++....|.
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~ 235 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFA 235 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCC
Confidence 3211 0000 00235667889999999999987666677888888776674
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.1 Score=51.58 Aligned_cols=67 Identities=12% Similarity=0.136 Sum_probs=42.4
Q ss_pred CCCeEEEECCccchhH--HHhhc-CCeEEEEcCCcccHHHHHHHHHHc----CCCcEEecCCCCCCCCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFV--ASLLA-KEVLTLTVGLKDDLVDLAQVALER----GFPAVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfa--a~La~-~~V~gmDIsp~D~seamlq~A~eR----GL~~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
.+..++|+|||.|-+. ..+.+ ..|+|+||+|. +++++... -+...+...+...+-+.-+.||.++..
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpe-----ALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviN 121 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPE-----ALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVIN 121 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHH-----HHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEec
Confidence 3578999999999754 33333 35999999873 44444332 333333444445555666889988754
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.12 Score=53.08 Aligned_cols=133 Identities=20% Similarity=0.341 Sum_probs=73.4
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCCC-Cchhhhhcc---ccc---h-hhccccCCCCCCCccchhhcccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-DTLPVIYDR---GLV---G-IYHDWCESFGTYPRSYDLLHADHLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-~tL~vI~~R---GLi---g-~yhdwce~f~typrTyDLlHa~~lf 618 (689)
..|+|+++|.|.++.+|... +-+ +|+-++.. ..+...-.+ ++. - +-.|+-+.+. +.+||+|-++--+
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~~~--~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy 185 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERPDA--EVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVSNPPY 185 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEECCCc
Confidence 36999999999999988753 212 23333321 222211111 111 1 1124433332 4789999775333
Q ss_pred ccccC----------------------CcCCccceeeeeccccccCcEEEEeCchhhHHHHHHHHhhccee-EEEe-ecC
Q 044932 619 SRLKS----------------------RCRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGILRSLHWE-IRMT-YAQ 674 (689)
Q Consensus 619 s~~~~----------------------~c~~~~~illEmDRILRP~G~~iirD~~~~l~~v~~i~~~lrW~-~~~~-~~~ 674 (689)
..... .......++-++-++|+|||++++--...--..++.++....+. +.+. |-.
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~d~~ 265 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRKDLA 265 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEecCCC
Confidence 21110 00111334556669999999999964444445677777655553 3332 555
Q ss_pred CCceEEEEEe
Q 044932 675 DKEGILCAQK 684 (689)
Q Consensus 675 ~~E~iL~~~K 684 (689)
+.+++++++|
T Consensus 266 ~~~r~~~~~~ 275 (275)
T PRK09328 266 GRDRVVLGRR 275 (275)
T ss_pred CCceEEEEEC
Confidence 6788988864
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.16 Score=48.13 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhc-----C---CeEEEEcCCc
Q 044932 289 VLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA-----K---EVLTLTVGLK 339 (689)
Q Consensus 289 a~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~-----~---~V~gmDIsp~ 339 (689)
+..+...|..++..........+|+|+|||-|.++..|+. . .|+++|..+.
T Consensus 6 i~~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~ 64 (141)
T PF13679_consen 6 IERMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNES 64 (141)
T ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcH
Confidence 3444455555433211112567999999999998877765 2 5889998774
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.17 Score=51.66 Aligned_cols=101 Identities=18% Similarity=0.108 Sum_probs=47.0
Q ss_pred CCCeEEEECCccchhH--HHhh-cCC-eEEEEcCCccc--HHHHHHHHHH----cCCC---cEEecCCCCCCCCCC---C
Q 044932 308 NIRVVLEIGSADLSFV--ASLL-AKE-VLTLTVGLKDD--LVDLAQVALE----RGFP---AVVSPLGNRRLPFPS---G 371 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfa--a~La-~~~-V~gmDIsp~D~--seamlq~A~e----RGL~---~i~~~~dt~~LPFpD---~ 371 (689)
+..+.+|+|||.|... ++|. ... ++|+.+.+.-. +..+++...+ .|.. ..+...|....++.. .
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s 121 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWS 121 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGH
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhhc
Confidence 4579999999999742 3333 333 89999887421 1122222221 1321 112222211111100 2
Q ss_pred CcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 372 VFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 372 SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
.-|+|+|.... |.++.-..|.++..-||||-++| +..
T Consensus 122 ~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~II-s~~ 158 (205)
T PF08123_consen 122 DADVVFVNNTC--FDPDLNLALAELLLELKPGARII-STK 158 (205)
T ss_dssp C-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEE-ESS
T ss_pred CCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEE-ECC
Confidence 35888876322 34456678889999999887765 543
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.016 Score=62.77 Aligned_cols=95 Identities=13% Similarity=0.172 Sum_probs=64.0
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhcc----cc---chhhccccCCCCCCCccchhhccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDR----GL---VGIYHDWCESFGTYPRSYDLLHADHLFS 619 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~R----GL---ig~yhdwce~f~typrTyDLlHa~~lfs 619 (689)
..|+|.++|.|.|+.+|..... +|+-++.. .-+.+.-.+ ++ |-..+.=.+.++..+.+||+|=+.++|.
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 3699999999999998876532 34444443 333333222 12 1122222355565668999999999888
Q ss_pred cccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 620 RLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 620 ~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
+..+. ..+|-+|=|+|+|||.++|..
T Consensus 210 Hv~d~----~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 210 HVANP----AEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred hcCCH----HHHHHHHHHHcCCCcEEEEEE
Confidence 77643 457889999999999999874
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.037 Score=57.62 Aligned_cols=102 Identities=20% Similarity=0.223 Sum_probs=58.3
Q ss_pred eeEEeecCCcchhHHHHhccC--Cc-eEEEeccCCC-CCchhhhhccc-cchhhccccCCCCCCCccchhhccccccccc
Q 044932 547 IRNVMDMKSIYGGFAAALAQQ--KI-WVMNVVPVHA-PDTLPVIYDRG-LVGIYHDWCESFGTYPRSYDLLHADHLFSRL 621 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~--~v-WVMNvvp~~~-~~tL~vI~~RG-Lig~yhdwce~f~typrTyDLlHa~~lfs~~ 621 (689)
-.+|+|+++|.|.+++.|... .. . .+|+-++- ++.+.....|. -+...+---+.+++-+.+||+|.+. |+
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~-~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~--~~-- 160 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITT-MQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRI--YA-- 160 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccC-CeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEe--cC--
Confidence 356999999999999988643 11 1 13444443 24444333332 1111111113345446789999753 32
Q ss_pred cCCcCCccceeeeeccccccCcEEEEeCch-hhHHHHHHH
Q 044932 622 KSRCRQPVSIVVEMDRILRPGGWAIVRDKV-EILDPLEGI 660 (689)
Q Consensus 622 ~~~c~~~~~illEmDRILRP~G~~iirD~~-~~l~~v~~i 660 (689)
. ..+-|+-|+|+|||++|+.... ..+..++.+
T Consensus 161 ----~---~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~ 193 (272)
T PRK11088 161 ----P---CKAEELARVVKPGGIVITVTPGPRHLFELKGL 193 (272)
T ss_pred ----C---CCHHHHHhhccCCCEEEEEeCCCcchHHHHHH
Confidence 1 1356899999999999987432 244444444
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.018 Score=57.23 Aligned_cols=93 Identities=19% Similarity=0.296 Sum_probs=56.9
Q ss_pred eeEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhc----ccc--c----hhhccccCCCCCCCccchhhccc
Q 044932 547 IRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYD----RGL--V----GIYHDWCESFGTYPRSYDLLHAD 615 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~----RGL--i----g~yhdwce~f~typrTyDLlHa~ 615 (689)
--+|+|+++|.|.|+..|..... .|+=++.. ..+...-. -|+ + +-..+|. ...|.+||+|.+.
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~~D~i~~~ 119 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLA---EKGAKSFDVVTCM 119 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh---cCCCCCccEEEeh
Confidence 34799999999999888865431 12222221 11111111 122 1 2222222 1236799999999
Q ss_pred cccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 616 HLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 616 ~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
++|....+ ...+|-++-++|+|+|.+++.+
T Consensus 120 ~~l~~~~~----~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 120 EVLEHVPD----PQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred hHHHhCCC----HHHHHHHHHHhcCCCcEEEEEe
Confidence 88876543 2457889999999999999875
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.0098 Score=60.62 Aligned_cols=100 Identities=16% Similarity=0.233 Sum_probs=65.8
Q ss_pred CCCCCCeeEEeecCCcchhHHHHhccC--CceEEEeccCCC---CCch----hhhhccccchhhccccCCCCCCCccchh
Q 044932 541 GIDWSKIRNVMDMKSIYGGFAAALAQQ--KIWVMNVVPVHA---PDTL----PVIYDRGLVGIYHDWCESFGTYPRSYDL 611 (689)
Q Consensus 541 ~~~~~~iRNvmDMna~~GgFAAal~~~--~vWVMNvvp~~~---~~tL----~vI~~RGLig~yhdwce~f~typrTyDL 611 (689)
.+...+|+++++.+++.|-|.+.|..+ .+.++-++|..- ...| .|-+.++-| .+. .-+.+|||
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dv------p~~--~P~~~FDL 109 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADV------PEF--WPEGRFDL 109 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-T------TT-----SS-EEE
T ss_pred hcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcC------CCC--CCCCCeeE
Confidence 467789999999999999999999764 577777766431 0000 122333322 221 24789999
Q ss_pred hccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 612 LHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 612 lHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
||.+-+|--+.+.-. +..++-.|...|+|||.+|+-.
T Consensus 110 IV~SEVlYYL~~~~~-L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 110 IVLSEVLYYLDDAED-LRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp EEEES-GGGSSSHHH-HHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEehHhHcCCCHHH-HHHHHHHHHHHhCCCCEEEEEE
Confidence 999999987766555 3667788889999999999974
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.76 Score=50.61 Aligned_cols=137 Identities=13% Similarity=0.051 Sum_probs=84.1
Q ss_pred CcccchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC--C-eEEEEcCCcccHHHHHHHHHHcCCCcE-
Q 044932 282 QSEFKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK--E-VLTLTVGLKDDLVDLAQVALERGFPAV- 357 (689)
Q Consensus 282 gt~F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~--~-V~gmDIsp~D~seamlq~A~eRGL~~i- 357 (689)
-.||..+...=-..+.++.. .+.+||||=||.|.|+.-++.. . |+++|++|. .-.-+.+-++-.++...
T Consensus 168 Kv~Fsprl~~ER~Rva~~v~------~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~-A~~~L~eNi~LN~v~~~v 240 (341)
T COG2520 168 KVYFSPRLSTERARVAELVK------EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPD-AVEYLKENIRLNKVEGRV 240 (341)
T ss_pred HeEECCCchHHHHHHHhhhc------CCCEEEEccCCcccchhhhhhcCCceEEEEecCHH-HHHHHHHHHHhcCcccee
Confidence 35565555422334444432 3579999999999998776643 3 999999994 22233333444455543
Q ss_pred -EecCCCCCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchh----HHHHHHHHHHhcce
Q 044932 358 -VSPLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIE----EEEALTTLTASICW 430 (689)
Q Consensus 358 -~~~~dt~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le----~~~~ie~La~~l~W 430 (689)
...+|+...+..-+.||-|+...- . .-..++-...+.|++||.+.+-.....-. ....+...+.+++.
T Consensus 241 ~~i~gD~rev~~~~~~aDrIim~~p--~---~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~ 313 (341)
T COG2520 241 EPILGDAREVAPELGVADRIIMGLP--K---SAHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGY 313 (341)
T ss_pred eEEeccHHHhhhccccCCEEEeCCC--C---cchhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccC
Confidence 224555555554489999986531 1 22368888889999999988765432211 23457777777655
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.24 Score=55.30 Aligned_cols=20 Identities=25% Similarity=0.639 Sum_probs=16.5
Q ss_pred CCCCCcceEEecccccccccc
Q 044932 368 FPSGVFDAIHCDGCSITWHAH 388 (689)
Q Consensus 368 FpD~SFDlVhcs~cli~W~~d 388 (689)
||++|.+++|++.+ +||...
T Consensus 158 fP~~Slh~~~Ss~s-lHWLS~ 177 (386)
T PLN02668 158 FPARSIDVFHSAFS-LHWLSQ 177 (386)
T ss_pred cCCCceEEEEeecc-ceeccc
Confidence 89999999998855 589753
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.024 Score=60.85 Aligned_cols=102 Identities=15% Similarity=0.178 Sum_probs=58.1
Q ss_pred ccCCCCCCeeEEeecCCcchhHHHHhccC-----CceEEEeccCCCCCchhhhhcc-ccchhhccccCCC--CCCCccch
Q 044932 539 GLGIDWSKIRNVMDMKSIYGGFAAALAQQ-----KIWVMNVVPVHAPDTLPVIYDR-GLVGIYHDWCESF--GTYPRSYD 610 (689)
Q Consensus 539 ~l~~~~~~iRNvmDMna~~GgFAAal~~~-----~vWVMNvvp~~~~~tL~vI~~R-GLig~yhdwce~f--~typrTyD 610 (689)
.|.+.++. .|||+.|+.|+|+..|.+. .|+-+-+-|....+.|.+.-.| +++.+..|-+.+. ...+-++|
T Consensus 127 ~l~IkpG~--~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vD 204 (293)
T PTZ00146 127 NIPIKPGS--KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVD 204 (293)
T ss_pred eeccCCCC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCC
Confidence 34566664 6999999999988877653 2544332221111233333332 5666666765431 11123567
Q ss_pred hhccccccccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 611 LLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 611 LlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
+|=++-. ..+.. .-+++++.|+|+|+|.++|-
T Consensus 205 vV~~Dva---~pdq~---~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 205 VIFADVA---QPDQA---RIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEEEeCC---CcchH---HHHHHHHHHhccCCCEEEEE
Confidence 7633321 11111 23567999999999999984
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.27 Score=52.69 Aligned_cols=100 Identities=22% Similarity=0.220 Sum_probs=56.5
Q ss_pred CCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHH----cCCCc---EEecCCCCC-CC-C-CCCCcce
Q 044932 309 IRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALE----RGFPA---VVSPLGNRR-LP-F-PSGVFDA 375 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~e----RGL~~---i~~~~dt~~-LP-F-pD~SFDl 375 (689)
.++|||+=|=||+|+.+.+.. .|+.+|.|. .+++.|.+ .|+.. .+...|.-. |. + ..+.||+
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~-----~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~ 198 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSK-----RALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDL 198 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-H-----HHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCH-----HHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCE
Confidence 579999999999998765433 488888764 45555544 35431 222233210 10 0 2468999
Q ss_pred EEec-----cccccccccHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 376 IHCD-----GCSITWHAHGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 376 Vhcs-----~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
|++- .....-..+-..++.-..++|+|||+++++.-..
T Consensus 199 IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 199 IILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp EEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 9973 1110101234567888899999999998776443
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.022 Score=49.64 Aligned_cols=90 Identities=23% Similarity=0.336 Sum_probs=43.2
Q ss_pred eecCCcchhHHHHhccCCceEEEeccCCC-CCchh----hhhccccc---hhhccccCCCCCCC-ccchhhccccccccc
Q 044932 551 MDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLP----VIYDRGLV---GIYHDWCESFGTYP-RSYDLLHADHLFSRL 621 (689)
Q Consensus 551 mDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~----vI~~RGLi---g~yhdwce~f~typ-rTyDLlHa~~lfs~~ 621 (689)
||.++|.|.++..|.+.- --..++=++- ++-|. -+.+.+.. =+..+--+.+...+ .+||+|.+.++|...
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 699999999999997652 1222332222 22221 11111210 01112223334444 599999999999988
Q ss_pred cCCcCCccceeeeeccccccCcEE
Q 044932 622 KSRCRQPVSIVVEMDRILRPGGWA 645 (689)
Q Consensus 622 ~~~c~~~~~illEmDRILRP~G~~ 645 (689)
. + +..+|-.+-++|+|||.+
T Consensus 80 ~---~-~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 E---D-IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-----HHHHHHHHTTT-TSS-EE
T ss_pred h---h-HHHHHHHHHHHcCCCCCC
Confidence 2 3 356788999999999985
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.037 Score=60.49 Aligned_cols=96 Identities=17% Similarity=0.093 Sum_probs=58.8
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhhhhccc---cchhhccccCCCCCCCccchhhcccccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPVIYDRG---LVGIYHDWCESFGTYPRSYDLLHADHLFSRLK 622 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~vI~~RG---Lig~yhdwce~f~typrTyDLlHa~~lfs~~~ 622 (689)
..|+|+++|.|.++.+|... +- -+|+=++. ++.|...-++. =|-+.+.-.+.++.-+.+||+|-+.+.|..+.
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 46999999999988777542 11 12332332 22333222221 01223322344555568999998888776655
Q ss_pred CCcCCccceeeeeccccccCcEEEEeC
Q 044932 623 SRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 623 ~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
+. ..+|-|+-|+|+|||.++|-+
T Consensus 193 d~----~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 193 DP----QRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred CH----HHHHHHHHHhcCCCcEEEEEE
Confidence 43 347889999999999987753
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.35 Score=50.49 Aligned_cols=96 Identities=23% Similarity=0.296 Sum_probs=63.6
Q ss_pred CCCeEEEECCccchhHHHhh---c-C-CeEEEEcCCcccHHHHHHHHHHc-CCCcEEecCCCCCCC-----CCCCCcceE
Q 044932 308 NIRVVLEIGSADLSFVASLL---A-K-EVLTLTVGLKDDLVDLAQVALER-GFPAVVSPLGNRRLP-----FPSGVFDAI 376 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La---~-~-~V~gmDIsp~D~seamlq~A~eR-GL~~i~~~~dt~~LP-----FpD~SFDlV 376 (689)
++.+||-+|+.+|.....+. + . .|+++.++|... ...+..|.+| ++..++..+ +.| +- ..+|+|
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~-rdL~~la~~R~NIiPIl~DA---r~P~~Y~~lv-~~VDvI 147 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM-RDLLNLAKKRPNIIPILEDA---RHPEKYRMLV-EMVDVI 147 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHHHHHHHSTTEEEEES-T---TSGGGGTTTS---EEEE
T ss_pred CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhH-HHHHHHhccCCceeeeeccC---CChHHhhccc-ccccEE
Confidence 35789999999998665554 3 3 389999999633 5778888888 333344422 333 33 489999
Q ss_pred EeccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 377 HCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 377 hcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
++- ... ......++..+...||+||+|+|+..
T Consensus 148 ~~D-VaQ--p~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 148 FQD-VAQ--PDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp EEE--SS--TTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred Eec-CCC--hHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 864 221 22345677788899999999999854
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.067 Score=54.14 Aligned_cols=127 Identities=17% Similarity=0.247 Sum_probs=65.1
Q ss_pred eEEeecCCcchhHHHHhccC-----CceEEEeccCCCCCchhhhhccccchhhccccC---------CCCCCCccchhhc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-----KIWVMNVVPVHAPDTLPVIYDRGLVGIYHDWCE---------SFGTYPRSYDLLH 613 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-----~vWVMNvvp~~~~~tL~vI~~RGLig~yhdwce---------~f~typrTyDLlH 613 (689)
..|||.+||.|+|+..|.+. .|-.+-.-|. +.+ .|+.-+-.|... .|. +.+||+|-
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~---~~~-----~~v~~i~~D~~~~~~~~~i~~~~~--~~~~D~V~ 122 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM---DPI-----VGVDFLQGDFRDELVLKALLERVG--DSKVQVVM 122 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc---cCC-----CCcEEEecCCCChHHHHHHHHHhC--CCCCCEEe
Confidence 36999999999997666442 1222222221 111 121111112221 121 45788888
Q ss_pred cccccccccCCc-C------CccceeeeeccccccCcEEEEe-----CchhhHHHHHHHHhhcceeEEEee-cCCCceEE
Q 044932 614 ADHLFSRLKSRC-R------QPVSIVVEMDRILRPGGWAIVR-----DKVEILDPLEGILRSLHWEIRMTY-AQDKEGIL 680 (689)
Q Consensus 614 a~~lfs~~~~~c-~------~~~~illEmDRILRP~G~~iir-----D~~~~l~~v~~i~~~lrW~~~~~~-~~~~E~iL 680 (689)
++.......... + +.+.+|-++=|+|+|||.++|- +-.+++..+++.....+.---... ....|.++
T Consensus 123 S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~ 202 (209)
T PRK11188 123 SDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYI 202 (209)
T ss_pred cCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEEECCccccccCceeEE
Confidence 765332211110 0 0145788999999999999994 234455555444333333100000 13468899
Q ss_pred EEEe
Q 044932 681 CAQK 684 (689)
Q Consensus 681 ~~~K 684 (689)
+|..
T Consensus 203 ~~~~ 206 (209)
T PRK11188 203 VATG 206 (209)
T ss_pred Eeec
Confidence 9863
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.12 Score=49.56 Aligned_cols=117 Identities=21% Similarity=0.276 Sum_probs=70.6
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhh---------hccccchhhccccCCCCCCCccchhhccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVI---------YDRGLVGIYHDWCESFGTYPRSYDLLHADHL 617 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI---------~~RGLig~yhdwce~f~typrTyDLlHa~~l 617 (689)
..|+|+++|.|.++.+|.... -+|+-++- ++.+... -.||+.-+-+|+.+.|. +.+||+|=++.-
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~d~vi~n~p 99 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR--GDKFDVILFNPP 99 (188)
T ss_pred CEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc--ccCceEEEECCC
Confidence 469999999999999987663 23444433 2333222 12223334566666553 347999855544
Q ss_pred ccccc------------------CCcCCccceeeeeccccccCcEEEEeC-chhhHHHHHHHHhhcceeEEE
Q 044932 618 FSRLK------------------SRCRQPVSIVVEMDRILRPGGWAIVRD-KVEILDPLEGILRSLHWEIRM 670 (689)
Q Consensus 618 fs~~~------------------~~c~~~~~illEmDRILRP~G~~iirD-~~~~l~~v~~i~~~lrW~~~~ 670 (689)
|.... .... +..++-++.|+|+|+|.+++=- ...-...+...+....|.+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 170 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREV-IDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEV 170 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHH-HHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeee
Confidence 32210 0111 2457889999999999876642 223456677788877887644
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.035 Score=57.39 Aligned_cols=44 Identities=20% Similarity=0.325 Sum_probs=33.8
Q ss_pred CCCCCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 602 FGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 602 f~typrTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
++..+.+||+|+++.+|....+ ...+|-|+=|+|||||.++|-|
T Consensus 140 l~~~~~~fD~Vi~~~v~~~~~d----~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 140 LPVADNSVDVIISNCVINLSPD----KERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred CCCCCCceeEEEEcCcccCCCC----HHHHHHHHHHHcCCCcEEEEEE
Confidence 4444579999999888765432 2457889999999999999964
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.041 Score=55.12 Aligned_cols=90 Identities=20% Similarity=0.252 Sum_probs=51.1
Q ss_pred eEEeecCCcchhHHHHhccC-----CceEEEeccCCCCCchhhhhccccc---hhhc-cccCCCCCCCccchhhcccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-----KIWVMNVVPVHAPDTLPVIYDRGLV---GIYH-DWCESFGTYPRSYDLLHADHLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-----~vWVMNvvp~~~~~tL~vI~~RGLi---g~yh-dwce~f~typrTyDLlHa~~lf 618 (689)
..|+|+++|.|.+++.|... .|.-+-+.|.-..-.-.-+...|+- -+++ |-.+.++. ..+||+|.+++.+
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~~ 152 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIVTAAA 152 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-CCCccEEEEccCc
Confidence 36999999999999877542 2333333322110000122233432 2222 44443332 3689999988765
Q ss_pred ccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 619 SRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 619 s~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
... .=++-|+|+|||.+++-
T Consensus 153 ~~~----------~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 153 STI----------PSALVRQLKDGGVLVIP 172 (205)
T ss_pred chh----------hHHHHHhcCcCcEEEEE
Confidence 322 12455899999999884
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.035 Score=58.62 Aligned_cols=99 Identities=13% Similarity=0.263 Sum_probs=62.1
Q ss_pred CCeeEEeecCCcchhHHHHhccC-CceEEEeccCCCCCchh----hhhccccchhhccccCCC--CCCCccchhhccccc
Q 044932 545 SKIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAPDTLP----VIYDRGLVGIYHDWCESF--GTYPRSYDLLHADHL 617 (689)
Q Consensus 545 ~~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~~tL~----vI~~RGLig~yhdwce~f--~typrTyDLlHa~~l 617 (689)
...+.|+|+++|.|.++.++... |-. +|+-++-|..+. .+-+.|+-+-.+-.+-.| ..+| .+|++-..++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~--~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~~~ 224 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPEL--DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFCRI 224 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCC--EEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeEhh
Confidence 45679999999999999888654 311 233333333332 234456544332233222 2355 4798877777
Q ss_pred cccccCC-cCCccceeeeeccccccCcEEEEeC
Q 044932 618 FSRLKSR-CRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 618 fs~~~~~-c~~~~~illEmDRILRP~G~~iirD 649 (689)
+-.+.+. |. .||-++-|.|+|||.++|-|
T Consensus 225 lh~~~~~~~~---~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 225 LYSANEQLST---IMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred hhcCChHHHH---HHHHHHHHhcCCCCEEEEEE
Confidence 6655432 33 47889999999999998875
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.029 Score=56.95 Aligned_cols=96 Identities=10% Similarity=0.162 Sum_probs=56.1
Q ss_pred eEEeecCCcchhHHHHhccC---CceEEEeccCCC-CCchhhhhc----cccc---h-hhccccCCCCCCCccchhhccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ---KIWVMNVVPVHA-PDTLPVIYD----RGLV---G-IYHDWCESFGTYPRSYDLLHAD 615 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~---~vWVMNvvp~~~-~~tL~vI~~----RGLi---g-~yhdwce~f~typrTyDLlHa~ 615 (689)
..|+|+++|.|.++.+|... +-+ +|+-++- ++-|...-. .++. - +..|+++ ++ + ..+|+|.+.
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~--~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~-~~~d~v~~~ 129 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNV--KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH-VE-I-KNASMVILN 129 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CC-C-CCCCEEeee
Confidence 46999999999999888653 322 2333332 222222111 1211 0 1113322 11 2 358888877
Q ss_pred cccccccCCcCCccceeeeeccccccCcEEEEeCc
Q 044932 616 HLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDK 650 (689)
Q Consensus 616 ~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~ 650 (689)
..|...... . ...+|-+|-|+|+|||.++|.|.
T Consensus 130 ~~l~~~~~~-~-~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 130 FTLQFLPPE-D-RIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred cchhhCCHH-H-HHHHHHHHHHhcCCCeEEEEeec
Confidence 776654321 2 14578999999999999999974
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.48 Score=48.44 Aligned_cols=116 Identities=14% Similarity=0.086 Sum_probs=67.1
Q ss_pred EEEECCccchhHHHhhcCC----eEEEEcCCcccHHHHHHHHHHcCCCcEE--ecCCCCCCCCCCCC-cceEEecccccc
Q 044932 312 VLEIGSADLSFVASLLAKE----VLTLTVGLKDDLVDLAQVALERGFPAVV--SPLGNRRLPFPSGV-FDAIHCDGCSIT 384 (689)
Q Consensus 312 VLDVGCGtGsfaa~La~~~----V~gmDIsp~D~seamlq~A~eRGL~~i~--~~~dt~~LPFpD~S-FDlVhcs~cli~ 384 (689)
|.||||--|.++.+|+..+ ++++||++.-. ....+.....|+...+ ...|... +++.+. .|.|+.++.--.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL-~~A~~~i~~~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGMGG~ 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPL-EKAKENIAKYGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAGMGGE 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHH-HHHHHHHHHTT-TTTEEEEE-SGGG-G--GGG---EEEEEEE-HH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCcccEEEEECCccc-ccCCCCCCCEEEEecCCHH
Confidence 6899999999999999764 88999987532 2333334445654322 2223211 244443 788876542100
Q ss_pred ccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEee
Q 044932 385 WHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHK 436 (689)
Q Consensus 385 W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~ 436 (689)
--..+|......++..-.|++..... ...+...+...+|..+...
T Consensus 79 ---lI~~ILe~~~~~~~~~~~lILqP~~~----~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 79 ---LIIEILEAGPEKLSSAKRLILQPNTH----AYELRRWLYENGFEIIDED 123 (205)
T ss_dssp ---HHHHHHHHTGGGGTT--EEEEEESS-----HHHHHHHHHHTTEEEEEEE
T ss_pred ---HHHHHHHhhHHHhccCCeEEEeCCCC----hHHHHHHHHHCCCEEEEeE
Confidence 11256666677777777888876543 2348889999999987654
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.18 Score=55.67 Aligned_cols=113 Identities=14% Similarity=0.194 Sum_probs=57.5
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHcCCCcEE-----ecCC
Q 044932 293 LESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALERGFPAVV-----SPLG 362 (689)
Q Consensus 293 id~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eRGL~~i~-----~~~d 362 (689)
++.|....|++ ...+|||+|.|.|.-+.++-+. .++.+..+|. ...+-.-.++.+.... ....
T Consensus 102 L~~L~~~~~df----apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~---lrkV~~tl~~nv~t~~td~r~s~vt 174 (484)
T COG5459 102 LDELQKRVPDF----APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPA---LRKVGDTLAENVSTEKTDWRASDVT 174 (484)
T ss_pred HHHHHHhCCCc----CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHH---HHHHHHHHHhhcccccCCCCCCccc
Confidence 34444445544 3467999999999644433221 2333333331 0111111122221110 1111
Q ss_pred CCCCCCC-CCCcceEEecccccccc-c-cHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 363 NRRLPFP-SGVFDAIHCDGCSITWH-A-HGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 363 t~~LPFp-D~SFDlVhcs~cli~W~-~-d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
..++++| ...|++|+...-+++-- + .....+.-+..+|+|||.|+|.++.
T Consensus 175 ~dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 175 EDRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred hhccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 2345544 35777777654444411 1 1234777888999999999999865
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.064 Score=53.25 Aligned_cols=113 Identities=16% Similarity=0.178 Sum_probs=63.9
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCCC-Cch----hhhhccccchhhccccCCC----CCCC-ccchhhcccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-DTL----PVIYDRGLVGIYHDWCESF----GTYP-RSYDLLHADH 616 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-~tL----~vI~~RGLig~yhdwce~f----~typ-rTyDLlHa~~ 616 (689)
+.|+|.++|.|.|+.+|... |- .||+=++-. .-| .-+-..||-.+..=-|... ..+| .++|+|+.+.
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~--~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPD--KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCC--CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 46999999999999888754 21 133333321 111 1122333322211112221 1244 3888887653
Q ss_pred ccc-----cccCCcCCccceeeeeccccccCcEEEEe-CchhhHHHHHHHHhh
Q 044932 617 LFS-----RLKSRCRQPVSIVVEMDRILRPGGWAIVR-DKVEILDPLEGILRS 663 (689)
Q Consensus 617 lfs-----~~~~~c~~~~~illEmDRILRP~G~~iir-D~~~~l~~v~~i~~~ 663 (689)
-.- +.+.|... ..+|-++=|+|+|||.+++. |..+....+...+..
T Consensus 96 pdpw~k~~h~~~r~~~-~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~ 147 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQ-PHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSE 147 (194)
T ss_pred CCcCCCCCccccccCC-HHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 111 11234442 56788999999999999887 666666666555544
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.063 Score=56.25 Aligned_cols=130 Identities=13% Similarity=0.229 Sum_probs=77.0
Q ss_pred hhhhhhhHHHHHHHHHhhhccc--CCCCCCeeEEeecCCcchh----HHHHhccC-C---ceEEEeccCCCC-Cchhhhh
Q 044932 519 EKLSSDTRHWKAIVDRSYLTGL--GIDWSKIRNVMDMKSIYGG----FAAALAQQ-K---IWVMNVVPVHAP-DTLPVIY 587 (689)
Q Consensus 519 e~f~~D~~~W~~~v~~~y~~~l--~~~~~~iRNvmDMna~~Gg----FAAal~~~-~---vWVMNvvp~~~~-~tL~vI~ 587 (689)
..|..|...|...... .+..| ....+.--.|+|.++|.|- .|..|.+. + -|-..|+-++-. .-|. ++
T Consensus 71 T~FfR~~~~~~~l~~~-vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~-~A 148 (264)
T smart00138 71 TRFFRESKHFEALEEK-VLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALE-KA 148 (264)
T ss_pred CcccCCcHHHHHHHHH-HhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHH-HH
Confidence 4577888889887653 32222 1111233569999999995 55555432 1 233445555432 2221 22
Q ss_pred ccccc-----------------------------------hhhccccCCCCCCCccchhhccccccccccCCcCCcccee
Q 044932 588 DRGLV-----------------------------------GIYHDWCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIV 632 (689)
Q Consensus 588 ~RGLi-----------------------------------g~yhdwce~f~typrTyDLlHa~~lfs~~~~~c~~~~~il 632 (689)
.+|.- =..||-.+. +.-+..||+|.+..+|..... -. ...++
T Consensus 149 r~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~-~~~~~~fD~I~crnvl~yf~~-~~-~~~~l 225 (264)
T smart00138 149 RAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAE-SPPLGDFDLIFCRNVLIYFDE-PT-QRKLL 225 (264)
T ss_pred HcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCC-CCccCCCCEEEechhHHhCCH-HH-HHHHH
Confidence 22211 113555553 223678999999988876532 11 13588
Q ss_pred eeeccccccCcEEEEeCchhh
Q 044932 633 VEMDRILRPGGWAIVRDKVEI 653 (689)
Q Consensus 633 lEmDRILRP~G~~iirD~~~~ 653 (689)
-+|-|+|+|||+++|-....+
T Consensus 226 ~~l~~~L~pGG~L~lg~~E~~ 246 (264)
T smart00138 226 NRFAEALKPGGYLFLGHSESL 246 (264)
T ss_pred HHHHHHhCCCeEEEEECcccC
Confidence 999999999999999865443
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.083 Score=57.65 Aligned_cols=129 Identities=18% Similarity=0.185 Sum_probs=72.5
Q ss_pred EEeecCCcchhHHHHhccC-C-ceEEEeccCCCC-Cchh----hhhccccchhhccccCCCCCCCccchhhccccccccc
Q 044932 549 NVMDMKSIYGGFAAALAQQ-K-IWVMNVVPVHAP-DTLP----VIYDRGLVGIYHDWCESFGTYPRSYDLLHADHLFSRL 621 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~-~-vWVMNvvp~~~~-~tL~----vI~~RGLig~yhdwce~f~typrTyDLlHa~~lfs~~ 621 (689)
.|+|+++|.|.++++|... + .- |+-++.. .-|. .+-..|+-+..+ ++..++..+.+||+|-++--|-..
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~~~---v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPKIR---LTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDG 274 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCCCE---EEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCC
Confidence 4999999999999988764 2 22 2222211 1110 111223323222 334455567899999998777432
Q ss_pred cC-CcCCccceeeeeccccccCcEEEEeCch--hhHHHHHHHHhhcceeEEEeecCCCceEEEEEec
Q 044932 622 KS-RCRQPVSIVVEMDRILRPGGWAIVRDKV--EILDPLEGILRSLHWEIRMTYAQDKEGILCAQKT 685 (689)
Q Consensus 622 ~~-~c~~~~~illEmDRILRP~G~~iirD~~--~~l~~v~~i~~~lrW~~~~~~~~~~E~iL~~~K~ 685 (689)
.. .......++-++-|.|+|||.++|=-+. .+-..++..-.. +.+....++=+|+-|+|.
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~----~~~la~~~~f~v~~a~~~ 337 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGS----HEVLAQTGRFKVYRAIMT 337 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCC----eEEEEeCCCEEEEEEEcc
Confidence 11 1111356788999999999999875332 223333333322 233333445678888764
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.076 Score=57.00 Aligned_cols=129 Identities=22% Similarity=0.297 Sum_probs=70.6
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhh----hhcccc---chhh-ccccCCCCCCCccchhhccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPV----IYDRGL---VGIY-HDWCESFGTYPRSYDLLHADHL 617 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~v----I~~RGL---ig~y-hdwce~f~typrTyDLlHa~~l 617 (689)
..|+|+.+|.|.++.+|... +.+ +|+-++- +..|.+ +...|+ |-++ .|+.+.++ +.+||+|-++-=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~--~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDA--EVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECCC
Confidence 46999999999999998753 322 3444443 223322 222343 2222 24444332 358999987621
Q ss_pred cccc------------c---------CCcCCccceeeeeccccccCcEEEEeCchhhHHHHHHHHh--hcceeEEEeecC
Q 044932 618 FSRL------------K---------SRCRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGILR--SLHWEIRMTYAQ 674 (689)
Q Consensus 618 fs~~------------~---------~~c~~~~~illEmDRILRP~G~~iirD~~~~l~~v~~i~~--~lrW~~~~~~~~ 674 (689)
+... . +...+...|+-+.-++|+|||.+++.-..+ ...+..+.. ++.|- ..+.
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~~~~~~---~~~~ 286 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDVPFTWL---EFEN 286 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhCCCEEE---EecC
Confidence 1100 0 001112456778889999999999863323 345666664 34562 2223
Q ss_pred CCceEEEEEe
Q 044932 675 DKEGILCAQK 684 (689)
Q Consensus 675 ~~E~iL~~~K 684 (689)
...+++++.+
T Consensus 287 ~~~~~~~~~~ 296 (307)
T PRK11805 287 GGDGVFLLTR 296 (307)
T ss_pred CCceEEEEEH
Confidence 4456665543
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.29 E-value=1 Score=46.57 Aligned_cols=126 Identities=13% Similarity=0.117 Sum_probs=69.0
Q ss_pred CCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccH-------HHHHHHHHHcCCCcE------EecC-CCCCCC-CC
Q 044932 308 NIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDL-------VDLAQVALERGFPAV------VSPL-GNRRLP-FP 369 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~s-------eamlq~A~eRGL~~i------~~~~-dt~~LP-Fp 369 (689)
...+|+|+=-|.|.|+.-|... .-.+..+.|.+.. ..+...+++.+.... +..+ ..+.+. .+
T Consensus 48 pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~~~ 127 (238)
T COG4798 48 PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDLVP 127 (238)
T ss_pred CCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccccc
Confidence 4579999999999998877643 1133455554321 122223322221111 0001 111111 23
Q ss_pred CCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCc------------hhHHHHHHHHHHhcceeEEEe
Q 044932 370 SGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDS------------IEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 370 D~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~------------le~~~~ie~La~~l~W~~v~~ 435 (689)
..++|.++-..+ +| .....++.+++++.|||||.+++.+.... +.....+.+.+.+.+|.+.++
T Consensus 128 ~~~~yhdmh~k~-i~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~ae 203 (238)
T COG4798 128 TAQNYHDMHNKN-IH-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAE 203 (238)
T ss_pred cchhhhhhhccc-cC-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeee
Confidence 345554433322 33 34567899999999999999999875310 111234566677788877654
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.056 Score=44.38 Aligned_cols=95 Identities=24% Similarity=0.245 Sum_probs=55.0
Q ss_pred EEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhh---hccc---cchhhc-cccCCCCCCCccchhhcccccccc
Q 044932 549 NVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVI---YDRG---LVGIYH-DWCESFGTYPRSYDLLHADHLFSR 620 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI---~~RG---Lig~yh-dwce~f~typrTyDLlHa~~lfs~ 620 (689)
.++|+++|.|+++..+...+. ..++-++.. +-+... ...+ .+=+++ |+.+...+-+.+||++.+++.|..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCC--CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 379999999999988876321 123322221 111100 0111 111222 222222124678999999999876
Q ss_pred ccCCcCCccceeeeeccccccCcEEEEe
Q 044932 621 LKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 621 ~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
.. -. ...++-.+-+.|||+|++++.
T Consensus 79 ~~--~~-~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 LV--ED-LARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hh--hH-HHHHHHHHHHHcCCCCEEEEE
Confidence 31 12 245677888999999999986
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.26 Score=51.09 Aligned_cols=96 Identities=25% Similarity=0.283 Sum_probs=51.5
Q ss_pred eEEEECCccchhHHHhhcC----CeEEEEcCCc--ccHHHHHHHHHHc---C-CCcEEecCCC-----------------
Q 044932 311 VVLEIGSADLSFVASLLAK----EVLTLTVGLK--DDLVDLAQVALER---G-FPAVVSPLGN----------------- 363 (689)
Q Consensus 311 ~VLDVGCGtGsfaa~La~~----~V~gmDIsp~--D~seamlq~A~eR---G-L~~i~~~~dt----------------- 363 (689)
.+.|||||.|++...|... -++||.|--. |--.+.++.++.+ | ++. ++++-+
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~n-i~vlr~namk~lpn~f~kgqLsk 141 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPN-ISVLRTNAMKFLPNFFEKGQLSK 141 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcccccccccc-ceeeeccchhhccchhhhccccc
Confidence 5899999999998888754 3788876322 1112333332221 1 110 111111
Q ss_pred CCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 364 RRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 364 ~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
.-+.|||-.|-..-.-.-.+ -..++.|..=+||+||.++..+-.
T Consensus 142 mff~fpdpHfk~~khk~rii-----~~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 142 MFFLFPDPHFKARKHKWRII-----TSTLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred ceeecCChhHhhhhccceee-----chhHHHHHHhhhhcCceEEEEeeH
Confidence 11124444443321110011 126889999999999999987654
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.06 E-value=2.3 Score=45.94 Aligned_cols=126 Identities=22% Similarity=0.166 Sum_probs=74.2
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHH----cCCCcEE--ecC
Q 044932 293 LESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALE----RGFPAVV--SPL 361 (689)
Q Consensus 293 id~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~e----RGL~~i~--~~~ 361 (689)
+..|..+|. +. ++.+||+.|.|.|++.-+++.. .++..++. +...+.|++ .|+.... ..-
T Consensus 94 ia~I~~~L~-i~---PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH-----~~Ra~ka~eeFr~hgi~~~vt~~hr 164 (314)
T KOG2915|consen 94 IAMILSMLE-IR---PGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFH-----ETRAEKALEEFREHGIGDNVTVTHR 164 (314)
T ss_pred HHHHHHHhc-CC---CCCEEEecCCCcchHHHHHHHhhCcCcceEEEEec-----HHHHHHHHHHHHHhCCCcceEEEEe
Confidence 344555553 33 3578999999999987776642 47888873 334444443 4655332 222
Q ss_pred CCCCCCC--CCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEE
Q 044932 362 GNRRLPF--PSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 362 dt~~LPF--pD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~ 434 (689)
|.....| .+..+|+|+.-. . .|-.++--++.+||-+|.-+++-.+ .++.-+.--+++.+++|..+.
T Consensus 165 DVc~~GF~~ks~~aDaVFLDl-P-----aPw~AiPha~~~lk~~g~r~csFSP-CIEQvqrtce~l~~~gf~~i~ 232 (314)
T KOG2915|consen 165 DVCGSGFLIKSLKADAVFLDL-P-----APWEAIPHAAKILKDEGGRLCSFSP-CIEQVQRTCEALRSLGFIEIE 232 (314)
T ss_pred ecccCCccccccccceEEEcC-C-----ChhhhhhhhHHHhhhcCceEEeccH-HHHHHHHHHHHHHhCCCceEE
Confidence 3223334 368899997531 1 3335666677799988854444433 344333445567888997654
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=92.00 E-value=1.4 Score=47.31 Aligned_cols=138 Identities=12% Similarity=0.130 Sum_probs=63.0
Q ss_pred CCeEEEECCccchhHHHhh-c-----CCeEEEEcCCcccHHHHHHHHHH-----cCC--CcEEecCCCCCCCCCCCCcce
Q 044932 309 IRVVLEIGSADLSFVASLL-A-----KEVLTLTVGLKDDLVDLAQVALE-----RGF--PAVVSPLGNRRLPFPSGVFDA 375 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La-~-----~~V~gmDIsp~D~seamlq~A~e-----RGL--~~i~~~~dt~~LPFpD~SFDl 375 (689)
.++|+=||||.=-+++-++ . ..|.++|++|. +++.|++ .|+ ...+...+....+..-..||+
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~-----A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~Dv 195 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPE-----ANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDV 195 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHH-----HHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHH-----HHHHHHHHHhhcccccCCeEEEecchhccccccccCCE
Confidence 4699999999776554333 2 23788999874 2222221 122 223444554445554579999
Q ss_pred EEecc-ccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccccC-ceeEEEEEeCC
Q 044932 376 IHCDG-CSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEIS-EMGVKIYQKPE 452 (689)
Q Consensus 376 Vhcs~-cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~g-~~~i~IwqKp~ 452 (689)
|+.+. +.+. ..+...+|..+.+.++||..++++..++.+.--........--+|+....-.-+.. .+.+.++||+.
T Consensus 196 V~lAalVg~~-~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp~vd~~~l~gf~~~~~~hP~~~ViNSvv~~rk~~ 273 (276)
T PF03059_consen 196 VFLAALVGMD-AEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLYPVVDPEDLRGFEVLAVVHPTDEVINSVVFARKKQ 273 (276)
T ss_dssp EEE-TT-S-----SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS----TGGGTTEEEEEEE---TT---EEEEE----
T ss_pred EEEhhhcccc-cchHHHHHHHHHhhCCCCcEEEEecchhhHHHcCCCCChHHCCCeEEEEEECCCCCceeEEEEEEecc
Confidence 98653 2211 23678999999999999999999977654421000111112228887654332211 24588888875
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.70 E-value=0.92 Score=51.22 Aligned_cols=124 Identities=19% Similarity=0.288 Sum_probs=72.2
Q ss_pred CCCeEEEECCccch---hHHHhh-cCC-eEEEEcCCcccHHHHHHHHHHcCCCcEEe-cCCCCCCC---CCCCCcceEE-
Q 044932 308 NIRVVLEIGSADLS---FVASLL-AKE-VLTLTVGLKDDLVDLAQVALERGFPAVVS-PLGNRRLP---FPSGVFDAIH- 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGs---faa~La-~~~-V~gmDIsp~D~seamlq~A~eRGL~~i~~-~~dt~~LP---FpD~SFDlVh- 377 (689)
.+-+|||+.|-.|+ +-++|. ..+ |++.|..-.-. ....+.+.+-|+...+. ..|...+| |+. +||-|.
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~-~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVLL 318 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRL-KSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVLL 318 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHH-HHHHHHHHHhCCCceEEEccCcccccccccCc-ccceeee
Confidence 56789999999996 334444 445 66777654211 23334445557766543 45555555 774 999997
Q ss_pred ---eccc-------ccccccc----------HHHHHHHHHhccCCCcEEEEEcCCCchhHH-HHHHHHHHhc-ceeEE
Q 044932 378 ---CDGC-------SITWHAH----------GGKLLLEMNRILRPSGYFILSTKHDSIEEE-EALTTLTASI-CWNIL 433 (689)
Q Consensus 378 ---cs~c-------li~W~~d----------~~~aL~EI~RVLRPGG~fVIsdp~~~le~~-~~ie~La~~l-~W~~v 433 (689)
|+.. ++-|... -.++|.-.-..++|||+|+.++=.-..++. ..+..++.+. +.+++
T Consensus 319 DAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p~~kL~ 396 (460)
T KOG1122|consen 319 DAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKRPEVKLV 396 (460)
T ss_pred cCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhCCceEec
Confidence 5531 1111110 124566667789999999999754333332 3355555655 55544
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.23 Score=53.54 Aligned_cols=39 Identities=10% Similarity=0.116 Sum_probs=31.0
Q ss_pred CCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHc
Q 044932 309 IRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALER 352 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eR 352 (689)
..++||++||.|+++.+++.. .|+|+|.+| .+++.|.++
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~-----~al~~ak~~ 63 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDP-----DAIAAAKDR 63 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCH-----HHHHHHHHh
Confidence 458999999999999888753 399999876 467777654
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.37 E-value=0.5 Score=50.19 Aligned_cols=66 Identities=26% Similarity=0.209 Sum_probs=45.3
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcC---CCcEEecCCCCCCCCCCC-CcceEEec
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERG---FPAVVSPLGNRRLPFPSG-VFDAIHCD 379 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRG---L~~i~~~~dt~~LPFpD~-SFDlVhcs 379 (689)
..+||+||+|.|.++..|+++ .|+++.+++. +++...++. -...+...|+...+|++. .++.|++.
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~-----l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~~vVaN 102 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVTAIEIDRR-----LAEVLKERFAPYDNLTVINGDALKFDFPSLAQPYKVVAN 102 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHH-----HHHHHHHhcccccceEEEeCchhcCcchhhcCCCEEEEc
Confidence 578999999999999999976 4899998863 444444432 122344556677777743 57777653
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.084 Score=53.35 Aligned_cols=91 Identities=18% Similarity=0.178 Sum_probs=47.9
Q ss_pred eEEeecCCcchhHHHHhccC-----CceEEEeccCCCCCchhhhhccccchhhccccCCCCCCC--ccchhhcccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-----KIWVMNVVPVHAPDTLPVIYDRGLVGIYHDWCESFGTYP--RSYDLLHADHLFSR 620 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-----~vWVMNvvp~~~~~tL~vI~~RGLig~yhdwce~f~typ--rTyDLlHa~~lfs~ 620 (689)
..|+|+++|+|.+++.|... .|.-+-+.|.-..-.-..+-.-|+-.+---.+..+..++ ..||+|++.+.+.
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~- 156 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAAGP- 156 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCCcc-
Confidence 47999999999999877542 333222222111000001111132111112223333332 6799998866443
Q ss_pred ccCCcCCccceeeeeccccccCcEEEEe
Q 044932 621 LKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 621 ~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
.+.-.+-+.|+|||.+++-
T Consensus 157 ---------~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 157 ---------DIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred ---------cchHHHHHhhCCCcEEEEE
Confidence 2333455689999998884
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.16 Score=53.57 Aligned_cols=134 Identities=20% Similarity=0.274 Sum_probs=77.9
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhhhhc----ccc---ch-hhccccCCCCCCCccchhhccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPVIYD----RGL---VG-IYHDWCESFGTYPRSYDLLHADHL 617 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~vI~~----RGL---ig-~yhdwce~f~typrTyDLlHa~~l 617 (689)
..|+|+++|.|.++.+|... +-+ +|+-++. +..|.+... .|+ |= +..||.+.++ +..||+|=++-=
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~--~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~--~~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNA--EVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLA--GQKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCc--CCCccEEEECCC
Confidence 46999999999999988753 322 2333332 223322221 133 11 2257777652 237898766411
Q ss_pred ccc------------ccCC---------cCCccceeeeeccccccCcEEEEeCchhhHHHHHHHHh-hccee-EEEe-ec
Q 044932 618 FSR------------LKSR---------CRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGILR-SLHWE-IRMT-YA 673 (689)
Q Consensus 618 fs~------------~~~~---------c~~~~~illEmDRILRP~G~~iirD~~~~l~~v~~i~~-~lrW~-~~~~-~~ 673 (689)
+-. +... -.....|+-+.-++|+|||++++--...--..+..+.. ...|. +.+. |-
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~~D~ 271 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENGRDL 271 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEecCC
Confidence 100 0000 01124466677889999999999866566667777765 45664 4443 55
Q ss_pred CCCceEEEEEec
Q 044932 674 QDKEGILCAQKT 685 (689)
Q Consensus 674 ~~~E~iL~~~K~ 685 (689)
.+.++++++++.
T Consensus 272 ~g~~R~~~~~~~ 283 (284)
T TIGR00536 272 NGKERVVLGFYH 283 (284)
T ss_pred CCCceEEEEEec
Confidence 668899998753
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.26 E-value=0.074 Score=54.73 Aligned_cols=97 Identities=11% Similarity=0.216 Sum_probs=55.8
Q ss_pred eEEeecCCcchhHHHHhcc---CCceEEEeccCCC-CCchhhhhc----ccc---chhhccccCCCCCCCccchhhcccc
Q 044932 548 RNVMDMKSIYGGFAAALAQ---QKIWVMNVVPVHA-PDTLPVIYD----RGL---VGIYHDWCESFGTYPRSYDLLHADH 616 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~---~~vWVMNvvp~~~-~~tL~vI~~----RGL---ig~yhdwce~f~typrTyDLlHa~~ 616 (689)
..|+|+++|.|.++.+|.. .+-| .|+=++. +.-|...-. .|+ |-+++.-.+.++ + ..+|+|-+..
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~--~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~-~-~~~D~vv~~~ 133 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNC--KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA-I-ENASMVVLNF 133 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC-C-CCCCEEehhh
Confidence 3599999999999887754 3333 2333332 222222211 122 222221122222 2 3488877766
Q ss_pred ccccccCCcCCccceeeeeccccccCcEEEEeCc
Q 044932 617 LFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDK 650 (689)
Q Consensus 617 lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~ 650 (689)
.|..... .. ...++-+|-|+|+|||.+++.|.
T Consensus 134 ~l~~l~~-~~-~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 134 TLQFLEP-SE-RQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHHhCCH-HH-HHHHHHHHHHhcCCCCEEEEEEe
Confidence 6654432 22 25689999999999999999873
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.53 Score=49.75 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=30.7
Q ss_pred CCCCCcceEEec--ccc--------cccc-----ccHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 368 FPSGVFDAIHCD--GCS--------ITWH-----AHGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 368 FpD~SFDlVhcs--~cl--------i~W~-----~d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
+++++||+|++. ... -.|. .-....|.++.|+|||||.|++.....
T Consensus 23 l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~ 83 (284)
T PRK11524 23 IPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTE 83 (284)
T ss_pred cccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCch
Confidence 567888888874 110 0010 112468899999999999999975543
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.03 E-value=0.56 Score=50.47 Aligned_cols=64 Identities=22% Similarity=0.335 Sum_probs=44.5
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc--CCC--cEEe--cCCCCCCCCCCCCcceEEe
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER--GFP--AVVS--PLGNRRLPFPSGVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR--GL~--~i~~--~~dt~~LPFpD~SFDlVhc 378 (689)
....||++|-|||.++..|++. .|+++.++|. |+....+| |.+ ..+. ..|...+++| .||.+++
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dpr-----mvael~krv~gtp~~~kLqV~~gD~lK~d~P--~fd~cVs 129 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPR-----MVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RFDGCVS 129 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcH-----HHHHHHHHhcCCCccceeeEEecccccCCCc--ccceeec
Confidence 5679999999999999999875 5999999885 55555554 544 2222 2333444555 7888876
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.94 E-value=0.14 Score=51.69 Aligned_cols=119 Identities=16% Similarity=0.183 Sum_probs=63.3
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhh----hcccc--chhhccccCCCCCCCccchhhcccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVI----YDRGL--VGIYHDWCESFGTYPRSYDLLHADHLFSR 620 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI----~~RGL--ig~yhdwce~f~typrTyDLlHa~~lfs~ 620 (689)
-.|+|+++|.|.++..|...+.- +|+-++- +..+... ...|+ .-+-.|+.+.+. +..||+|.++--|..
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~~--~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGAG--SVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVE--FRPFDVVVSNPPYVP 113 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhcc--CCCeeEEEECCCCCC
Confidence 36999999999998887664321 2333332 2223211 11232 111234444332 368999998743321
Q ss_pred cc-----------------CCcCCccceeeeeccccccCcEEEEe-CchhhHHHHHHHHhhcceeEEE
Q 044932 621 LK-----------------SRCRQPVSIVVEMDRILRPGGWAIVR-DKVEILDPLEGILRSLHWEIRM 670 (689)
Q Consensus 621 ~~-----------------~~c~~~~~illEmDRILRP~G~~iir-D~~~~l~~v~~i~~~lrW~~~~ 670 (689)
-. .....+..++-++-|+|+|||.+++= .+..-+..+..++++-.|++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 181 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEV 181 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEE
Confidence 10 01111245666789999999999872 2222334455555555555443
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.89 E-value=0.98 Score=47.34 Aligned_cols=96 Identities=17% Similarity=0.138 Sum_probs=57.7
Q ss_pred CCCeEEEECCccchhHHHhhcCC---eEEEEcCCcccHHHHHHHHHHcC------CCcEEecCCCCCCC-CCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLAKE---VLTLTVGLKDDLVDLAQVALERG------FPAVVSPLGNRRLP-FPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~~---V~gmDIsp~D~seamlq~A~eRG------L~~i~~~~dt~~LP-FpD~SFDlVh 377 (689)
.+++||.||-|-|.....+.++. -+.+.-. +..++.-++-| +....+... .-+| ++|+.||-|.
T Consensus 101 kggrvLnVGFGMgIidT~iQe~~p~~H~IiE~h-----p~V~krmr~~gw~ek~nViil~g~We-Dvl~~L~d~~FDGI~ 174 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAH-----PDVLKRMRDWGWREKENVIILEGRWE-DVLNTLPDKHFDGIY 174 (271)
T ss_pred CCceEEEeccchHHHHHHHhhcCCcceEEEecC-----HHHHHHHHhcccccccceEEEecchH-hhhccccccCcceeE
Confidence 45799999999998777777653 2334433 33444444332 211122110 1122 7899999997
Q ss_pred eccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
--- .-+.-++...+..-+.|+|||+|.|-+.-
T Consensus 175 yDT-y~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 175 YDT-YSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred eec-hhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 431 11223455567778999999999987764
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=90.84 E-value=0.087 Score=55.91 Aligned_cols=120 Identities=24% Similarity=0.318 Sum_probs=68.0
Q ss_pred CCCeEEEECCccchhHHHhhc----C-CeEEEEcCCcccHHHHHHHHHHcCCCcEEec-CCCCCC-C-CCCCCcceEEe-
Q 044932 308 NIRVVLEIGSADLSFVASLLA----K-EVLTLTVGLKDDLVDLAQVALERGFPAVVSP-LGNRRL-P-FPSGVFDAIHC- 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~----~-~V~gmDIsp~D~seamlq~A~eRGL~~i~~~-~dt~~L-P-FpD~SFDlVhc- 378 (689)
....|||+++|.|+-+.+|+. . .|++.|+++.-. ......+.+-|+..+... .|+..+ + ++...||.|++
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl-~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRL-KRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHH-HHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHH-HHHHHHHHhcCCceEEEEeeccccccccccccccchhhcC
Confidence 456899999999985544442 2 388999887421 222333344476654332 343332 2 23346999984
Q ss_pred ---ccc-------ccccc--ccH--------HHHHHHHHhcc----CCCcEEEEEcCCCch-hHHHHHHHHHHhc
Q 044932 379 ---DGC-------SITWH--AHG--------GKLLLEMNRIL----RPSGYFILSTKHDSI-EEEEALTTLTASI 428 (689)
Q Consensus 379 ---s~c-------li~W~--~d~--------~~aL~EI~RVL----RPGG~fVIsdp~~~l-e~~~~ie~La~~l 428 (689)
+.. .+.|. ... ..+|....+.| ||||+++.++=.-.. +.+.-++.+++..
T Consensus 164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~ 238 (283)
T PF01189_consen 164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRH 238 (283)
T ss_dssp CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHS
T ss_pred CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhC
Confidence 321 01121 111 25788899999 999999999743222 2233455555553
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=90.74 E-value=0.12 Score=45.79 Aligned_cols=96 Identities=18% Similarity=0.133 Sum_probs=53.0
Q ss_pred cCCCCCCeeEEeecCCcchhHHHHhccC-CceEEEeccCCCC-Cchhh----hhccccchh--h-cc--ccCCCCCCCcc
Q 044932 540 LGIDWSKIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-DTLPV----IYDRGLVGI--Y-HD--WCESFGTYPRS 608 (689)
Q Consensus 540 l~~~~~~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-~tL~v----I~~RGLig~--y-hd--wce~f~typrT 608 (689)
+.+..+ ..|+|+++|.|.++..+... +- .+|+-++-. ..+.. +...|+-.+ . .| |+ +...+.+
T Consensus 15 ~~~~~~--~~vldlG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 88 (124)
T TIGR02469 15 LRLRPG--DVLWDIGAGSGSITIEAARLVPN--GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEA--LEDSLPE 88 (124)
T ss_pred cCCCCC--CEEEEeCCCCCHHHHHHHHHCCC--ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecccccc--ChhhcCC
Confidence 444433 48999999999999888653 21 234444422 22211 112222111 1 11 22 2223457
Q ss_pred chhhccccccccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 609 YDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 609 yDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
||.|=..+.+. . +..++-++-|.|+|||++++.
T Consensus 89 ~D~v~~~~~~~------~-~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 89 PDRVFIGGSGG------L-LQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CCEEEECCcch------h-HHHHHHHHHHHcCCCCEEEEE
Confidence 88875433222 1 145788899999999999974
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=90.66 E-value=3.3 Score=42.22 Aligned_cols=125 Identities=18% Similarity=0.212 Sum_probs=70.6
Q ss_pred CCeEEEECCccchhHHHhhcCC---eEEEEcCCcccHHHHHHHHHHc----CCCc--EEecCCCC-CCCCCCC--CcceE
Q 044932 309 IRVVLEIGSADLSFVASLLAKE---VLTLTVGLKDDLVDLAQVALER----GFPA--VVSPLGNR-RLPFPSG--VFDAI 376 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~~---V~gmDIsp~D~seamlq~A~eR----GL~~--i~~~~dt~-~LPFpD~--SFDlV 376 (689)
+.++||+=+|+|++|..-+.++ ++.++.+.. ..+.+.+. ++.. .+...++. -|+-... .||+|
T Consensus 44 g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~-----a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlV 118 (187)
T COG0742 44 GARVLDLFAGSGALGLEALSRGAARVVFVEKDRK-----AVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLV 118 (187)
T ss_pred CCEEEEecCCccHhHHHHHhCCCceEEEEecCHH-----HHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEE
Confidence 4689999999999998877764 777887653 33333322 3222 22223332 2222223 49999
Q ss_pred Eeccccccccc---cHHHHHH--HHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccccCceeEEEEEe
Q 044932 377 HCDGCSITWHA---HGGKLLL--EMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEISEMGVKIYQK 450 (689)
Q Consensus 377 hcs~cli~W~~---d~~~aL~--EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqK 450 (689)
+.-- |+.. +....+. +-...|+|+|.+++-.....- +. -.--+|.+..++. .|...+.+|+.
T Consensus 119 flDP---Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~~~-----~~--~~~~~~~~~r~k~--yG~t~l~~y~~ 185 (187)
T COG0742 119 FLDP---PYAKGLLDKELALLLLEENGWLKPGALIVVEHDKDVE-----LP--ELPANFELHREKK--YGQTKLTFYRR 185 (187)
T ss_pred EeCC---CCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCCcC-----cc--ccCCCeEEEEEee--cCCEEEEEEEe
Confidence 8631 2221 1123333 366889999999998765321 11 1223677776544 35555666654
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=90.63 E-value=1.1 Score=43.60 Aligned_cols=141 Identities=18% Similarity=0.219 Sum_probs=68.1
Q ss_pred CCCCCeeEEeecCCcchhHHHHhccCCceE-----EEeccCCCCCchhhhhccccc---hhhccccCCCCCCCccchhhc
Q 044932 542 IDWSKIRNVMDMKSIYGGFAAALAQQKIWV-----MNVVPVHAPDTLPVIYDRGLV---GIYHDWCESFGTYPRSYDLLH 613 (689)
Q Consensus 542 ~~~~~iRNvmDMna~~GgFAAal~~~~vWV-----MNvvp~~~~~tL~vI~~RGLi---g~yhdwce~f~typrTyDLlH 613 (689)
++.+.-.+|+|.+|.-|||...+..+.... +-+.|...+.....| +|=| .+.....+.++.-.+.+|||-
T Consensus 19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred CCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeee--ecccchhhHHHhhhhhccccccCcceec
Confidence 566678999999999999999998776222 333333111111222 3321 111122333322226899999
Q ss_pred cccccccccCC-------cCCccceeeeeccccccCcEEEEe-----CchhhHHHHHHHHhhcceeEEEe-ecCCCceEE
Q 044932 614 ADHLFSRLKSR-------CRQPVSIVVEMDRILRPGGWAIVR-----DKVEILDPLEGILRSLHWEIRMT-YAQDKEGIL 680 (689)
Q Consensus 614 a~~lfs~~~~~-------c~~~~~illEmDRILRP~G~~iir-----D~~~~l~~v~~i~~~lrW~~~~~-~~~~~E~iL 680 (689)
+|+-+..-.++ ..+....|.=+-..|+|||.+|+- +..+++..++..-...++---.. -....|.+|
T Consensus 97 ~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~Kp~~sr~~s~E~Yl 176 (181)
T PF01728_consen 97 SDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIVKPPSSRSESSEEYL 176 (181)
T ss_dssp E-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEEE-TTSBTTCBEEEE
T ss_pred cccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEEECcCCCCCccEEEE
Confidence 99955432211 000011122223569999987774 22356666665444433321111 124578999
Q ss_pred EEEe
Q 044932 681 CAQK 684 (689)
Q Consensus 681 ~~~K 684 (689)
||..
T Consensus 177 v~~~ 180 (181)
T PF01728_consen 177 VCRG 180 (181)
T ss_dssp ESEE
T ss_pred EEcC
Confidence 9874
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=90.56 E-value=0.14 Score=53.38 Aligned_cols=126 Identities=17% Similarity=0.152 Sum_probs=72.6
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhhhh----ccccchhhccccCCCCC-CCccchhhcccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPVIY----DRGLVGIYHDWCESFGT-YPRSYDLLHADHLFSR 620 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~vI~----~RGLig~yhdwce~f~t-yprTyDLlHa~~lfs~ 620 (689)
..|+|+.+|.|.|+.+|... +-. +|+-++. +..+...- ..|+--+-.|+.+.++. +...||+|=++=-+..
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~--~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGI--ELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 36999999999999887642 211 2333332 12221111 11211122344443321 2346888866543321
Q ss_pred c-------------cCCcC---------CccceeeeeccccccCcEEEEeCchhhHHHHHHHHhhcceeEEEeecCC
Q 044932 621 L-------------KSRCR---------QPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGILRSLHWEIRMTYAQD 675 (689)
Q Consensus 621 ~-------------~~~c~---------~~~~illEmDRILRP~G~~iirD~~~~l~~v~~i~~~lrW~~~~~~~~~ 675 (689)
. ..++. ++..|+-...++|+|||.+++-=..+-...|..++....|...+..|.+
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~ 242 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEE 242 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEccc
Confidence 1 11111 1235666778999999999987666667788888888888888876654
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=90.51 E-value=0.11 Score=52.25 Aligned_cols=87 Identities=22% Similarity=0.247 Sum_probs=48.8
Q ss_pred eEEeecCCcchhHHHHhccC--C-ceEEEeccCCC-CCchh----hhhcccc---chhhccccCCCCCCCccchhhcccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ--K-IWVMNVVPVHA-PDTLP----VIYDRGL---VGIYHDWCESFGTYPRSYDLLHADH 616 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~--~-vWVMNvvp~~~-~~tL~----vI~~RGL---ig~yhdwce~f~typrTyDLlHa~~ 616 (689)
..|+|+++|.|.+++.|... + .. |+-++- +.-+. .+...|+ .=+..|..+.+.. ...||+|+.++
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g~---V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~ 154 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDGL---VVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP-LAPYDRIYVTA 154 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCE---EEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc-cCCCCEEEEcC
Confidence 36999999999999988653 1 11 222221 11111 1222333 1122244333332 25899998765
Q ss_pred ccccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 617 LFSRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 617 lfs~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
... .+.-.+=+.|+|||.+++-
T Consensus 155 ~~~----------~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 155 AGP----------KIPEALIDQLKEGGILVMP 176 (215)
T ss_pred Ccc----------cccHHHHHhcCcCcEEEEE
Confidence 432 2333456889999999884
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=90.41 E-value=0.15 Score=53.98 Aligned_cols=114 Identities=22% Similarity=0.266 Sum_probs=64.0
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCCC-Cchhhh----hcccc---chhh-ccccCCCCCCCccchhhccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-DTLPVI----YDRGL---VGIY-HDWCESFGTYPRSYDLLHADHL 617 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-~tL~vI----~~RGL---ig~y-hdwce~f~typrTyDLlHa~~l 617 (689)
..|+|+.+|.|.++.+|... +-+ +|+-++-. ..|.+. ...|+ |-++ -|+-+.++ +.+||+|-++-=
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~--~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--~~~fD~Iv~NPP 198 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEA--EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--GRKYDLIVSNPP 198 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--CCCccEEEECCC
Confidence 46999999999999999754 212 24444332 222221 22243 2122 23333331 347999887521
Q ss_pred cccc---------------------cCCcCCccceeeeeccccccCcEEEEeCchhhHHHHHHHHhhcce
Q 044932 618 FSRL---------------------KSRCRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGILRSLHW 666 (689)
Q Consensus 618 fs~~---------------------~~~c~~~~~illEmDRILRP~G~~iirD~~~~l~~v~~i~~~lrW 666 (689)
+... .+...+...|+-+.-+.|+|||++++.-.... ..|+.+.....|
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~ 267 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPF 267 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCC
Confidence 1100 01111124567788899999999998744333 678888865444
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=89.95 E-value=0.12 Score=51.23 Aligned_cols=95 Identities=26% Similarity=0.329 Sum_probs=54.0
Q ss_pred eEEeecCCcchhHHHHhccCC--ceEEEeccCCC-CCchhhhhcc----cc---chhhc-cccCCCCCCCccchhhcccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQK--IWVMNVVPVHA-PDTLPVIYDR----GL---VGIYH-DWCESFGTYPRSYDLLHADH 616 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~--vWVMNvvp~~~-~~tL~vI~~R----GL---ig~yh-dwce~f~typrTyDLlHa~~ 616 (689)
..|+|+++|.|.++..|...- .. +|+-++. ++.+...-.+ ++ +-+++ |. +.++.=+.+||+|.+.+
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTG--EVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDA-EALPFPDNSFDAVTIAF 129 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHHhhcccccccCeEEEeccc-ccCCCCCCCccEEEEec
Confidence 359999999999987775421 11 1222222 1222111111 11 11122 22 12232356899999877
Q ss_pred ccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 617 LFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 617 lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
++... .. ...+|-.+-++|+|||.+++-+
T Consensus 130 ~l~~~---~~-~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 130 GLRNV---PD-IDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ccccC---CC-HHHHHHHHHHhccCCcEEEEEE
Confidence 66433 33 3567889999999999998754
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=89.81 E-value=0.094 Score=46.49 Aligned_cols=94 Identities=19% Similarity=0.162 Sum_probs=34.2
Q ss_pred EEECCccchhHHHhhc----C---CeEEEEcCCcccHHHHHHHHHHcCCCc--EEecCCCC-CCC-CCCCCcceEEeccc
Q 044932 313 LEIGSADLSFVASLLA----K---EVLTLTVGLKDDLVDLAQVALERGFPA--VVSPLGNR-RLP-FPSGVFDAIHCDGC 381 (689)
Q Consensus 313 LDVGCGtGsfaa~La~----~---~V~gmDIsp~D~seamlq~A~eRGL~~--i~~~~dt~-~LP-FpD~SFDlVhcs~c 381 (689)
|++|+..|..+..++. . .++++|..+. .+...+.+.+.++.. .+...++. -++ +++.+||+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~--~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG--DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc--ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 6899888876665553 2 3788887662 112223333333332 22222221 111 33689999986542
Q ss_pred cccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 382 SITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 382 li~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
+. .+.....|..+.+.|+|||.+++-+
T Consensus 79 H~--~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HS--YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CC--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 11 1233467888899999999998864
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.78 E-value=0.088 Score=62.11 Aligned_cols=100 Identities=13% Similarity=0.184 Sum_probs=58.3
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCCC-Cchhhhhcc----cc-chhhccccCCCC--CCCccchhhcccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-DTLPVIYDR----GL-VGIYHDWCESFG--TYPRSYDLLHADHLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-~tL~vI~~R----GL-ig~yhdwce~f~--typrTyDLlHa~~lf 618 (689)
..|+|+++|.|.++.+|... + -.+|+-++-. +.|...-.+ |. +-+.+.=+..++ .-|.+||+|..+.++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P--~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETE--DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 47999999999998877642 2 1133333332 222221111 11 111111133344 236899999887655
Q ss_pred cccc----------CCcCCccceeeeeccccccCcEEEEeCc
Q 044932 619 SRLK----------SRCRQPVSIVVEMDRILRPGGWAIVRDK 650 (689)
Q Consensus 619 s~~~----------~~c~~~~~illEmDRILRP~G~~iirD~ 650 (689)
-.+- +.-. +..+|-++-|+|+|||.++|.|.
T Consensus 498 H~L~syIp~~g~~f~~ed-l~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEV-IKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHH-HHHHHHHHHHHcCCCcEEEEEeC
Confidence 4321 1123 25689999999999999999873
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=89.66 E-value=0.31 Score=48.12 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=27.0
Q ss_pred cceeeeeccccccCcEEEEeCc-hhhHHHHHHHHhhcc
Q 044932 629 VSIVVEMDRILRPGGWAIVRDK-VEILDPLEGILRSLH 665 (689)
Q Consensus 629 ~~illEmDRILRP~G~~iirD~-~~~l~~v~~i~~~lr 665 (689)
..++-++-|+|+|||.+++-.. .+.+..+...++.++
T Consensus 122 ~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~ 159 (196)
T PRK07402 122 KEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQ 159 (196)
T ss_pred HHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcC
Confidence 6788999999999999888753 335555666665543
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.93 E-value=1.5 Score=48.33 Aligned_cols=90 Identities=19% Similarity=0.152 Sum_probs=61.7
Q ss_pred CCCeEEEECCccc--hhHHHhhc---CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCC-CCCCCcceEEeccc
Q 044932 308 NIRVVLEIGSADL--SFVASLLA---KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLP-FPSGVFDAIHCDGC 381 (689)
Q Consensus 308 ~~R~VLDVGCGtG--sfaa~La~---~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LP-FpD~SFDlVhcs~c 381 (689)
+...|+=+|+| | ..+..++. ..|+++|.++ ..++.|++-|....+...+...+. .. ..||+|+..-.
T Consensus 166 pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~-----~K~e~a~~lGAd~~i~~~~~~~~~~~~-~~~d~ii~tv~ 238 (339)
T COG1064 166 PGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSE-----EKLELAKKLGADHVINSSDSDALEAVK-EIADAIIDTVG 238 (339)
T ss_pred CCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCCh-----HHHHHHHHhCCcEEEEcCCchhhHHhH-hhCcEEEECCC
Confidence 45788888888 6 35555543 5799999875 567888888876555422222221 22 34999985422
Q ss_pred cccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 382 SITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 382 li~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+ ..+....+.||+||.+++..-+
T Consensus 239 --~------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 --P------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred --h------hhHHHHHHHHhcCCEEEEECCC
Confidence 2 6888999999999999998755
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=88.51 E-value=0.12 Score=48.73 Aligned_cols=97 Identities=16% Similarity=0.303 Sum_probs=57.7
Q ss_pred eEEeecCCcchhHHHHhcc-C--CceEEEeccCCCCCchh---hhh-ccccc--hhh-ccccCCCCC-CCccchhhcccc
Q 044932 548 RNVMDMKSIYGGFAAALAQ-Q--KIWVMNVVPVHAPDTLP---VIY-DRGLV--GIY-HDWCESFGT-YPRSYDLLHADH 616 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~-~--~vWVMNvvp~~~~~tL~---vI~-~RGLi--g~y-hdwce~f~t-yprTyDLlHa~~ 616 (689)
-+|+|+++|+|.++-.|.. . +.=|+.|=.. +.-+. -.+ ..|+- =.+ .|+=+ ++. |+..||+|.+.+
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s--~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGVDIS--EEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISNG 81 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEEESS--HHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEES
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEEECc--HHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEcC
Confidence 3699999999999988883 1 2223332211 11111 111 12332 112 12222 221 448899999999
Q ss_pred ccccccCCcCCccceeeeeccccccCcEEEEeCch
Q 044932 617 LFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKV 651 (689)
Q Consensus 617 lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~ 651 (689)
+|....+. ..+|-+|=|.|+|+|.+++.+-.
T Consensus 82 ~l~~~~~~----~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFPDP----EKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTSHH----HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhccCH----HHHHHHHHHHcCCCcEEEEEECC
Confidence 98444333 34677999999999999999866
|
... |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=88.44 E-value=0.13 Score=49.74 Aligned_cols=49 Identities=18% Similarity=0.206 Sum_probs=37.4
Q ss_pred ccCCCCCCCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeCc
Q 044932 598 WCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDK 650 (689)
Q Consensus 598 wce~f~typrTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~ 650 (689)
=++.++.-+.+||+|=+...+..+.++ ..+|-||-|+|+|||.++|-|-
T Consensus 34 d~~~lp~~~~~fD~v~~~~~l~~~~d~----~~~l~ei~rvLkpGG~l~i~d~ 82 (160)
T PLN02232 34 DAIDLPFDDCEFDAVTMGYGLRNVVDR----LRAMKEMYRVLKPGSRVSILDF 82 (160)
T ss_pred chhhCCCCCCCeeEEEecchhhcCCCH----HHHHHHHHHHcCcCeEEEEEEC
Confidence 356677667899999877666655433 4468999999999999988763
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.21 E-value=0.2 Score=50.65 Aligned_cols=100 Identities=14% Similarity=0.237 Sum_probs=61.5
Q ss_pred CeeEEeecCCcchhHHHHhccC---CceEEEeccCCC-CCchhhhhcccc---chhhccccCCCCCCCccchhhcccccc
Q 044932 546 KIRNVMDMKSIYGGFAAALAQQ---KIWVMNVVPVHA-PDTLPVIYDRGL---VGIYHDWCESFGTYPRSYDLLHADHLF 618 (689)
Q Consensus 546 ~iRNvmDMna~~GgFAAal~~~---~vWVMNvvp~~~-~~tL~vI~~RGL---ig~yhdwce~f~typrTyDLlHa~~lf 618 (689)
.-..|+|.++|.|.++.+|... .-.-.+|+-++- ++-|.....+.. +-...--++.++.-+.+||+|-++++|
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~l 139 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFL 139 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCee
Confidence 4467999999999998877531 111234666654 244433333210 111111245566667899999999998
Q ss_pred ccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 619 SRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 619 s~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
....+. . +..+|-||-|+|| |.++|.|
T Consensus 140 hh~~d~-~-~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 140 HHLDDA-E-VVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred ecCChH-H-HHHHHHHHHHhcC--eeEEEec
Confidence 776543 2 1347889999999 5666665
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=87.90 E-value=0.6 Score=43.14 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=22.7
Q ss_pred eEEEECCccchhHHHhhcC----CeEEEEcCCc
Q 044932 311 VVLEIGSADLSFVASLLAK----EVLTLTVGLK 339 (689)
Q Consensus 311 ~VLDVGCGtGsfaa~La~~----~V~gmDIsp~ 339 (689)
++||+|||+|.++..++.. .|++++.+|.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~ 33 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPD 33 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHH
Confidence 4899999999988777643 3788887764
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=87.76 E-value=1.2 Score=51.28 Aligned_cols=48 Identities=13% Similarity=0.116 Sum_probs=34.4
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPA 356 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~ 356 (689)
....+||+-||||.++.+|+.. .|+|+.++|..+. .+-.-|...|+.+
T Consensus 383 ~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~-dA~~nA~~NgisN 432 (534)
T KOG2187|consen 383 ADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVE-DAEKNAQINGISN 432 (534)
T ss_pred CCcEEEEEeecCCceehhhhccccceeeeecChhhcc-hhhhcchhcCccc
Confidence 3478999999999999999875 6999999885432 2333344456543
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.37 E-value=14 Score=38.94 Aligned_cols=139 Identities=14% Similarity=0.086 Sum_probs=81.3
Q ss_pred eEEEECCccchhHHHhhcCC----eEEEEcCCcccHHHHHHHHHHcCCCcEEe--cCCCCCCCC-CCCCcceEEeccccc
Q 044932 311 VVLEIGSADLSFVASLLAKE----VLTLTVGLKDDLVDLAQVALERGFPAVVS--PLGNRRLPF-PSGVFDAIHCDGCSI 383 (689)
Q Consensus 311 ~VLDVGCGtGsfaa~La~~~----V~gmDIsp~D~seamlq~A~eRGL~~i~~--~~dt~~LPF-pD~SFDlVhcs~cli 383 (689)
++.||||--|.++.+|...+ +++.|+++.-. ...+......++.-.+. .+|. -.++ ++..+|.|+.++.-=
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl-~~a~~~v~~~~l~~~i~vr~~dg-l~~l~~~d~~d~ivIAGMGG 96 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPL-ESAIRNVKKNNLSERIDVRLGDG-LAVLELEDEIDVIVIAGMGG 96 (226)
T ss_pred ceeeccCchhHhHHHHHhcCCcceEEEeecccCHH-HHHHHHHHhcCCcceEEEeccCC-ccccCccCCcCEEEEeCCcH
Confidence 49999999999999998653 77888887533 23333333344433222 2332 1234 345899987653210
Q ss_pred cccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccc-cCcee-EEEEEeCCCchhHh
Q 044932 384 TWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDE-ISEMG-VKIYQKPESNDIYE 458 (689)
Q Consensus 384 ~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~-~g~~~-i~IwqKp~~~~cy~ 458 (689)
. --..+|.|-..-|+-==+|++..-... ..+++.+....|....+.--. -+..| |++..+.....||.
T Consensus 97 ~---lI~~ILee~~~~l~~~~rlILQPn~~~----~~LR~~L~~~~~~I~~E~ileE~~kiYEIlv~e~~~~~~~~~ 166 (226)
T COG2384 97 T---LIREILEEGKEKLKGVERLILQPNIHT----YELREWLSANSYEIKAETILEEDGKIYEILVVEKSSKPALYA 166 (226)
T ss_pred H---HHHHHHHHhhhhhcCcceEEECCCCCH----HHHHHHHHhCCceeeeeeeecccCeEEEEEEEecCCchhhhh
Confidence 0 112566677777764446666544321 237889999999987653321 13334 66666655556663
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=87.32 E-value=0.14 Score=52.78 Aligned_cols=96 Identities=11% Similarity=0.260 Sum_probs=50.3
Q ss_pred cCCCCCCeeEEeecCCcchhHHHHhccC----CceEEEeccCCCCCchhhh----hcc-ccchhhccccCCC--CCCCcc
Q 044932 540 LGIDWSKIRNVMDMKSIYGGFAAALAQQ----KIWVMNVVPVHAPDTLPVI----YDR-GLVGIYHDWCESF--GTYPRS 608 (689)
Q Consensus 540 l~~~~~~iRNvmDMna~~GgFAAal~~~----~vWVMNvvp~~~~~tL~vI----~~R-GLig~yhdwce~f--~typrT 608 (689)
+.+..+. .|||.++|.|+++..|... .|+-+-+-| .-|..+ -.| ++..+..|-.+++ ...+.+
T Consensus 68 l~i~~g~--~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~----~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~ 141 (226)
T PRK04266 68 FPIKKGS--KVLYLGAASGTTVSHVSDIVEEGVVYAVEFAP----RPMRELLEVAEERKNIIPILADARKPERYAHVVEK 141 (226)
T ss_pred CCCCCCC--EEEEEccCCCHHHHHHHHhcCCCeEEEEECCH----HHHHHHHHHhhhcCCcEEEECCCCCcchhhhcccc
Confidence 4566553 5999999999999888764 244332222 111111 111 2233333433321 112445
Q ss_pred chhhccccccccccCCcCCccceeeeeccccccCcEEEE
Q 044932 609 YDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIV 647 (689)
Q Consensus 609 yDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~ii 647 (689)
+|+| |+.....=. ...+|-++-|+|+|||.++|
T Consensus 142 ~D~i-----~~d~~~p~~-~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 142 VDVI-----YQDVAQPNQ-AEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred CCEE-----EECCCChhH-HHHHHHHHHHhcCCCcEEEE
Confidence 6664 221111001 01245699999999999999
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=87.05 E-value=8.5 Score=40.80 Aligned_cols=123 Identities=23% Similarity=0.295 Sum_probs=62.1
Q ss_pred CCCeEEEECCccc-hhHHHhhc--CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCC---CCCcceEEeccc
Q 044932 308 NIRVVLEIGSADL-SFVASLLA--KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFP---SGVFDAIHCDGC 381 (689)
Q Consensus 308 ~~R~VLDVGCGtG-sfaa~La~--~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFp---D~SFDlVhcs~c 381 (689)
.+++||=||=..- +++.+|.. ..|+++||+.... .-.-..|.+.|++......|. +-|+| -+.||++++--
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll-~fI~~~a~~~gl~i~~~~~Dl-R~~LP~~~~~~fD~f~TDP- 120 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLL-DFINRVAEEEGLPIEAVHYDL-RDPLPEELRGKFDVFFTDP- 120 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHH-HHHHHHHHHHT--EEEE---T-TS---TTTSS-BSEEEE---
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHH-HHHHHHHHHcCCceEEEEecc-cccCCHHHhcCCCEEEeCC-
Confidence 3578999986555 35666654 4699999986422 122234566788865555553 44444 38999998742
Q ss_pred cccccccH-HHHHHHHHhccCCCc---EEEEEcCCCchhHHHHHHHHHHhcceeEEEe
Q 044932 382 SITWHAHG-GKLLLEMNRILRPSG---YFILSTKHDSIEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 382 li~W~~d~-~~aL~EI~RVLRPGG---~fVIsdp~~~le~~~~ie~La~~l~W~~v~~ 435 (689)
+|+... ..++.--...||..| +|.++..+.....|..+++++..|++-+...
T Consensus 121 --PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~di 176 (243)
T PF01861_consen 121 --PYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITDI 176 (243)
T ss_dssp ---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEEE
T ss_pred --CCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHHH
Confidence 344332 344555556777655 4444444444566777999999999876543
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.35 E-value=4.1 Score=44.87 Aligned_cols=65 Identities=18% Similarity=0.194 Sum_probs=45.7
Q ss_pred CCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC--------C-----ch-hHHHHHHHHHHhcceeEEEee
Q 044932 371 GVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH--------D-----SI-EEEEALTTLTASICWNILAHK 436 (689)
Q Consensus 371 ~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~--------~-----~l-e~~~~ie~La~~l~W~~v~~~ 436 (689)
++||+|+..+ .|.-..+.-.+|.-|..+|+|||+++=.+|. + .+ ...+.+..++..++|+++.++
T Consensus 258 ~~~d~VvTcf-FIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 258 GSYDVVVTCF-FIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CccceEEEEE-EeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 4699876321 2332235567899999999999999977653 1 11 124668899999999998765
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=85.96 E-value=0.31 Score=45.71 Aligned_cols=41 Identities=24% Similarity=0.576 Sum_probs=27.0
Q ss_pred CcceEEeccc----ccccccc-HHHHHHHHHhccCCCcEEEEEcCC
Q 044932 372 VFDAIHCDGC----SITWHAH-GGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 372 SFDlVhcs~c----li~W~~d-~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
.||+|.|..+ +++|.++ ...+|.-+.+.|||||+|++-..+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~ 46 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQP 46 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 4899998642 2223222 246889999999999999998654
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=85.56 E-value=1.1 Score=47.18 Aligned_cols=135 Identities=15% Similarity=0.106 Sum_probs=67.4
Q ss_pred CeeEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhhhhcc-cc------chhhc-cccCCCCCCCccchhhccc
Q 044932 546 KIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPVIYDR-GL------VGIYH-DWCESFGTYPRSYDLLHAD 615 (689)
Q Consensus 546 ~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~vI~~R-GL------ig~yh-dwce~f~typrTyDLlHa~ 615 (689)
.-++|+|+++|.|.++..|... |. +.|+-++- |..+.+.-+. ++ +-+.+ |.=+-+...|.+||+|=.+
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPD--TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 4578999999999999877543 21 11222222 2222211111 11 11111 1111123457789999655
Q ss_pred ccccccc--CCcCCccceeeeeccccccCcEEEEe---CchhhHHHHHHHHhhcceeEEEee-cCCCceEEEEEe
Q 044932 616 HLFSRLK--SRCRQPVSIVVEMDRILRPGGWAIVR---DKVEILDPLEGILRSLHWEIRMTY-AQDKEGILCAQK 684 (689)
Q Consensus 616 ~lfs~~~--~~c~~~~~illEmDRILRP~G~~iir---D~~~~l~~v~~i~~~lrW~~~~~~-~~~~E~iL~~~K 684 (689)
. |+... .... ...++-++=++|+|||.++|- .+..+-.-++.+...+.-.+-+.. .....-|++|.|
T Consensus 144 ~-~~~~~~~~~l~-t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~~~~N~v~~a~~ 216 (262)
T PRK04457 144 G-FDGEGIIDALC-TQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAESHGNVAVFAFK 216 (262)
T ss_pred C-CCCCCCccccC-cHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecCCCccEEEEEEC
Confidence 2 33211 1111 146778888999999999882 332233333444444432222221 122356888876
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=85.52 E-value=0.52 Score=47.06 Aligned_cols=86 Identities=19% Similarity=0.212 Sum_probs=47.3
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhh----ccccch--hhccccCCCCCCC--ccchhhcccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIY----DRGLVG--IYHDWCESFGTYP--RSYDLLHADHLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~----~RGLig--~yhdwce~f~typ--rTyDLlHa~~lf 618 (689)
..|+|+++|+|.+++.|.... - .|+-++-. +-+...- .-|+-. +.+ ...+.++| .+||+|..+..+
T Consensus 80 ~~VLeiG~GsG~~t~~la~~~-~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~--~d~~~~~~~~~~fD~I~~~~~~ 154 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAHLV-R--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRH--GDGWKGWPAYAPFDRILVTAAA 154 (212)
T ss_pred CEEEEECCCccHHHHHHHHHh-C--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEE--CCcccCCCcCCCcCEEEEccCc
Confidence 469999999999988776531 1 23333321 2111111 113311 111 11233343 689999877644
Q ss_pred ccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 619 SRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 619 s~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
..+ .-++-+.|+|||.+++-
T Consensus 155 ~~~----------~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 155 PEI----------PRALLEQLKEGGILVAP 174 (212)
T ss_pred hhh----------hHHHHHhcCCCcEEEEE
Confidence 322 22345789999998874
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=85.50 E-value=0.84 Score=51.60 Aligned_cols=153 Identities=14% Similarity=0.134 Sum_probs=84.4
Q ss_pred hhhHHHHHHHHHhhhcccCCCCCCeeEEeecCCcchhHHHHhcc-CCceEEEeccCCC-CCchhhh----hcccc-ch-h
Q 044932 523 SDTRHWKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQ-QKIWVMNVVPVHA-PDTLPVI----YDRGL-VG-I 594 (689)
Q Consensus 523 ~D~~~W~~~v~~~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~-~~vWVMNvvp~~~-~~tL~vI----~~RGL-ig-~ 594 (689)
.+|+.+...+-+. + ..+ .+|+|+++|.|.++.+|.. .+-+ +|+-++- +..|.+. -..|+ |- +
T Consensus 236 peTE~LVe~aL~~----l--~~~--~rVLDLGcGSG~IaiaLA~~~p~a--~VtAVDiS~~ALe~AreNa~~~g~rV~fi 305 (423)
T PRK14966 236 PETEHLVEAVLAR----L--PEN--GRVWDLGTGSGAVAVTVALERPDA--FVRASDISPPALETARKNAADLGARVEFA 305 (423)
T ss_pred ccHHHHHHHhhhc----c--CCC--CEEEEEeChhhHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 4566666655431 1 122 2699999999999988764 2322 2333332 2222211 11221 11 2
Q ss_pred hccccCCCCCCCccchhhcccccccccc---------------------CCcCCccceeeeeccccccCcEEEEeCchhh
Q 044932 595 YHDWCESFGTYPRSYDLLHADHLFSRLK---------------------SRCRQPVSIVVEMDRILRPGGWAIVRDKVEI 653 (689)
Q Consensus 595 yhdwce~f~typrTyDLlHa~~lfs~~~---------------------~~c~~~~~illEmDRILRP~G~~iirD~~~~ 653 (689)
..||.+....-...||+|-++-=+.... +...+...|+-+.-+.|+|||++++-=..+-
T Consensus 306 ~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q 385 (423)
T PRK14966 306 HGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQ 385 (423)
T ss_pred EcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccH
Confidence 2355443110123689988754331110 1111112344555678999999988655566
Q ss_pred HHHHHHHHhhcceeE-EE-eecCCCceEEEEEec
Q 044932 654 LDPLEGILRSLHWEI-RM-TYAQDKEGILCAQKT 685 (689)
Q Consensus 654 l~~v~~i~~~lrW~~-~~-~~~~~~E~iL~~~K~ 685 (689)
-..|+.++....|.. .+ .|..+.++++++++.
T Consensus 386 ~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~~~ 419 (423)
T PRK14966 386 GAAVRGVLAENGFSGVETLPDLAGLDRVTLGKYM 419 (423)
T ss_pred HHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEEEh
Confidence 678888887777753 33 366778999998753
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.26 E-value=9.8 Score=40.42 Aligned_cols=97 Identities=27% Similarity=0.294 Sum_probs=55.2
Q ss_pred CCeEEEECCccchhH--HHhh-cCCeEEEEcCCcccHHHHHHHHHHc--------CCCcEEe--cCCC-----CCCCCCC
Q 044932 309 IRVVLEIGSADLSFV--ASLL-AKEVLTLTVGLKDDLVDLAQVALER--------GFPAVVS--PLGN-----RRLPFPS 370 (689)
Q Consensus 309 ~R~VLDVGCGtGsfa--a~La-~~~V~gmDIsp~D~seamlq~A~eR--------GL~~i~~--~~dt-----~~LPFpD 370 (689)
..+||.+|.|+|-.+ +++. ...|...|+... ...++..... |...... ..+. ..+|.+
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~---~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~- 162 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKV---VENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNP- 162 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhh---HHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCc-
Confidence 568999999999543 3332 334554454332 1222332221 2222222 1111 122222
Q ss_pred CCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 371 GVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 371 ~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
||+|+++.|.++ ....+.++.=|.-.|-.+|.+++..+-
T Consensus 163 --~DlilasDvvy~-~~~~e~Lv~tla~ll~~~~~i~l~~~l 201 (248)
T KOG2793|consen 163 --FDLILASDVVYE-EESFEGLVKTLAFLLAKDGTIFLAYPL 201 (248)
T ss_pred --ccEEEEeeeeec-CCcchhHHHHHHHHHhcCCeEEEEEec
Confidence 999999988765 445667888888888899966666654
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.20 E-value=5.6 Score=44.73 Aligned_cols=164 Identities=14% Similarity=0.193 Sum_probs=89.1
Q ss_pred cCCCCcccchhH-HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc
Q 044932 278 FPQNQSEFKGGV-LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER 352 (689)
Q Consensus 278 Fpgggt~F~~ga-~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR 352 (689)
|-.|+-+|...- ..|.+.|- .|.+..-.+.++||=+|-|.|.-+..|++. .|+-+|++|. |++++...
T Consensus 260 YldG~LQfsTrDe~RYhEsLV--~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~-----miela~~~ 332 (508)
T COG4262 260 YLDGGLQFSTRDEYRYHESLV--YPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPR-----MIELASHA 332 (508)
T ss_pred EEcCceeeeechhhhhhheee--ecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHH-----HHHHhhhh
Confidence 444455665443 25655442 233332125789999999999777778765 3788898874 56665521
Q ss_pred ----CC------CcEEecCCCCCCC---CCCCCcceEEeccccccccc-----cHHHHHHHHHhccCCCcEEEEEcCCCc
Q 044932 353 ----GF------PAVVSPLGNRRLP---FPSGVFDAIHCDGCSITWHA-----HGGKLLLEMNRILRPSGYFILSTKHDS 414 (689)
Q Consensus 353 ----GL------~~i~~~~dt~~LP---FpD~SFDlVhcs~cli~W~~-----d~~~aL~EI~RVLRPGG~fVIsdp~~~ 414 (689)
.+ ...+.+....... =....||.|+.-.-- +-.+ .-..+..-+.|-|+++|.+++.....+
T Consensus 333 ~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~D-P~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y 411 (508)
T COG4262 333 TVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPD-PSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPY 411 (508)
T ss_pred hHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCC-CCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCc
Confidence 11 0111111111111 124589998753100 0000 012455667788999999999875543
Q ss_pred hh---HHHHHHHHHHhcceeEEEe--eccccCceeEEEEEe
Q 044932 415 IE---EEEALTTLTASICWNILAH--KTDEISEMGVKIYQK 450 (689)
Q Consensus 415 le---~~~~ie~La~~l~W~~v~~--~~~~~g~~~i~IwqK 450 (689)
.. -|. +..-.++.++...-. ..-++|+-+..++.+
T Consensus 412 ~tp~vfw~-i~aTik~AG~~~~Pyhv~VPTFGeWGf~l~~~ 451 (508)
T COG4262 412 FTPRVFWR-IDATIKSAGYRVWPYHVHVPTFGEWGFILAAP 451 (508)
T ss_pred cCCceeee-ehhHHHhCcceeeeeEEecCcccccceeeccc
Confidence 31 111 344556666655322 123567777776665
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=85.14 E-value=0.38 Score=47.44 Aligned_cols=91 Identities=24% Similarity=0.291 Sum_probs=51.2
Q ss_pred EEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhccccchhhccccCCCCCC-CccchhhccccccccccCCcC
Q 044932 549 NVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDRGLVGIYHDWCESFGTY-PRSYDLLHADHLFSRLKSRCR 626 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~RGLig~yhdwce~f~ty-prTyDLlHa~~lfs~~~~~c~ 626 (689)
+|+|+++|.|.++.+|....-. +++-++. +..+.....+|+--+..|..+.++.+ +++||+|-+.+.|....+.
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~~--~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~-- 91 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQV--RGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNP-- 91 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccCC--cEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCH--
Confidence 6999999999999999654211 1222222 22233333455322233433334323 5799999999888765432
Q ss_pred CccceeeeeccccccCcEEEEe
Q 044932 627 QPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 627 ~~~~illEmDRILRP~G~~iir 648 (689)
..+|-||-|+ +|.+|+.
T Consensus 92 --~~~l~e~~r~---~~~~ii~ 108 (194)
T TIGR02081 92 --EEILDEMLRV---GRHAIVS 108 (194)
T ss_pred --HHHHHHHHHh---CCeEEEE
Confidence 3345555554 5555443
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=84.20 E-value=0.96 Score=48.77 Aligned_cols=128 Identities=20% Similarity=0.264 Sum_probs=60.3
Q ss_pred eEEeecCCcchhH--HHHhcc-CCceEEEeccCCCCCchhhhhccccchhhc-cccCCCCCCCccchhhccccccccccC
Q 044932 548 RNVMDMKSIYGGF--AAALAQ-QKIWVMNVVPVHAPDTLPVIYDRGLVGIYH-DWCESFGTYPRSYDLLHADHLFSRLKS 623 (689)
Q Consensus 548 RNvmDMna~~GgF--AAal~~-~~vWVMNvvp~~~~~tL~vI~~RGLig~yh-dwce~f~typrTyDLlHa~~lfs~~~~ 623 (689)
..|||+++|+|=. |||+.. ..|.-.-.=|..-.++.--+..-|+-.-.. ...+.+. -..||||=|+=+...+
T Consensus 163 ~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~--~~~~dlvvANI~~~vL-- 238 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLV--EGKFDLVVANILADVL-- 238 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTC--CS-EEEEEEES-HHHH--
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecccc--cccCCEEEECCCHHHH--
Confidence 3799999999954 444433 333321111111011111222223222110 0122222 2889999887666654
Q ss_pred CcCCccceeeeeccccccCcEEEEeCchh-hHHHHHHHHhhcceeEEEeecCCCceEEEEEec
Q 044932 624 RCRQPVSIVVEMDRILRPGGWAIVRDKVE-ILDPLEGILRSLHWEIRMTYAQDKEGILCAQKT 685 (689)
Q Consensus 624 ~c~~~~~illEmDRILRP~G~~iirD~~~-~l~~v~~i~~~lrW~~~~~~~~~~E~iL~~~K~ 685 (689)
..++=.+.+.|+|||++|+.--.. -...|....+. .|...-...++.=--|+++|+
T Consensus 239 -----~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~~~W~~l~~~Kk 295 (295)
T PF06325_consen 239 -----LELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREEGEWVALVFKKK 295 (295)
T ss_dssp -----HHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEETTEEEEEEEE-
T ss_pred -----HHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEECCEEEEEEEeC
Confidence 345667899999999999983221 12333333344 555433222222234555553
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.70 E-value=0.73 Score=49.23 Aligned_cols=98 Identities=19% Similarity=0.214 Sum_probs=61.8
Q ss_pred eeEEeecCCcchhHHHHhccCCceE------EEeccCC-CCCchhhhhccccchhh-cc----c-c---CCCCCCCccch
Q 044932 547 IRNVMDMKSIYGGFAAALAQQKIWV------MNVVPVH-APDTLPVIYDRGLVGIY-HD----W-C---ESFGTYPRSYD 610 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~~vWV------MNvvp~~-~~~tL~vI~~RGLig~y-hd----w-c---e~f~typrTyD 610 (689)
-=+++||.+|+|-.|-.+.+. |-- -||+-.+ .|+-|.+--.|-.-+-| -+ | | |.+|+-..+||
T Consensus 101 ~m~~lDvaGGTGDiaFril~~-v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D 179 (296)
T KOG1540|consen 101 GMKVLDVAGGTGDIAFRILRH-VKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFD 179 (296)
T ss_pred CCeEEEecCCcchhHHHHHHh-hccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcce
Confidence 367999999999877777532 100 1222232 24677766665533222 22 2 3 78897888999
Q ss_pred hhccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 611 LLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 611 LlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
+.-..+-. ..|.=+.-.|=|+-|+|.|||.+.+=+
T Consensus 180 ~yTiafGI----RN~th~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 180 AYTIAFGI----RNVTHIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred eEEEecce----ecCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 86544322 334334668999999999999876554
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.19 E-value=0.86 Score=51.01 Aligned_cols=111 Identities=15% Similarity=0.085 Sum_probs=64.2
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCCC-----Cchhhhhccccchh---hccc---cCCCCCCCccchhhccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-----DTLPVIYDRGLVGI---YHDW---CESFGTYPRSYDLLHAD 615 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-----~tL~vI~~RGLig~---yhdw---ce~f~typrTyDLlHa~ 615 (689)
..++|+++|.|.|+.+|... |-+ |++=++-. ..+.-+..+||=.+ ..|. .+.|+ +.++|.|+..
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~--~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~--~~s~D~I~ln 199 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNK--LFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLP--SNSVEKIFVH 199 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCC--CEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCC--CCceeEEEEe
Confidence 46999999999999999754 211 33333321 11223334443221 1121 22332 5789999865
Q ss_pred ccccccc---CCcCCccceeeeeccccccCcEEEEe-CchhhHHHHHHHHhh
Q 044932 616 HLFSRLK---SRCRQPVSIVVEMDRILRPGGWAIVR-DKVEILDPLEGILRS 663 (689)
Q Consensus 616 ~lfs~~~---~~c~~~~~illEmDRILRP~G~~iir-D~~~~l~~v~~i~~~ 663 (689)
.- ..|. +|=-....+|-|+=|+|+|||.+.|+ |..++...+...+..
T Consensus 200 FP-dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~ 250 (390)
T PRK14121 200 FP-VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLK 250 (390)
T ss_pred CC-CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHh
Confidence 21 2232 11111256789999999999999987 666666665555543
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=83.10 E-value=3.7 Score=42.93 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=26.8
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCC
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGL 338 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp 338 (689)
....|||+|.|+|.++..|++. .|+++++++
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~ 62 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDP 62 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSH
T ss_pred CCCEEEEeCCCCccchhhHhcccCcceeecCcH
Confidence 4579999999999999999864 599999876
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=82.89 E-value=1.3 Score=44.09 Aligned_cols=30 Identities=10% Similarity=0.072 Sum_probs=23.9
Q ss_pred CeEEEECCccchhHHHhhcC--CeEEEEcCCc
Q 044932 310 RVVLEIGSADLSFVASLLAK--EVLTLTVGLK 339 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~ 339 (689)
++|||+.||.|+.+.+++.. .|+++|++|.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~ 32 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPE 32 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HH
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHH
Confidence 37999999999999888875 5999999874
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=82.56 E-value=4.4 Score=45.40 Aligned_cols=109 Identities=12% Similarity=0.133 Sum_probs=64.1
Q ss_pred cCCCCCCeEEEECCccchhHH--HhhcCC-----------------------------------------eEEEEcCCcc
Q 044932 304 EWGKNIRVVLEIGSADLSFVA--SLLAKE-----------------------------------------VLTLTVGLKD 340 (689)
Q Consensus 304 ~~G~~~R~VLDVGCGtGsfaa--~La~~~-----------------------------------------V~gmDIsp~D 340 (689)
.|. ....++|==||+|.++. +|+..+ ++|+|+++..
T Consensus 188 gw~-~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~ 266 (381)
T COG0116 188 GWK-PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRH 266 (381)
T ss_pred CCC-CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHH
Confidence 454 34689999999999863 344321 5699998752
Q ss_pred cHHHHHHHHHHcCCCcE--EecCCCCCCCCCCCCcceEEecc---ccccccccHH----HHHHHHHhccCCCcEEEEEcC
Q 044932 341 DLVDLAQVALERGFPAV--VSPLGNRRLPFPSGVFDAIHCDG---CSITWHAHGG----KLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 341 ~seamlq~A~eRGL~~i--~~~~dt~~LPFpD~SFDlVhcs~---cli~W~~d~~----~aL~EI~RVLRPGG~fVIsdp 411 (689)
+ +.+..-|+..|+... +.+.+...|+=+-..+|+|+|.- -.+.=....+ .+...+.|+++--++++|++.
T Consensus 267 i-~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 267 I-EGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred H-HHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 2 222233344476633 44666666642227999999862 1111001111 344566678888888888887
Q ss_pred CCc
Q 044932 412 HDS 414 (689)
Q Consensus 412 ~~~ 414 (689)
...
T Consensus 346 e~~ 348 (381)
T COG0116 346 EDL 348 (381)
T ss_pred HHH
Confidence 643
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=81.94 E-value=7.9 Score=40.44 Aligned_cols=97 Identities=20% Similarity=0.260 Sum_probs=65.3
Q ss_pred CCCeEEEECCccchhHHHhh---cCC-eEEEEcCCcccHHHHHHHHHHc-CCCcEEecCCCCCCC--C--CCCCcceEEe
Q 044932 308 NIRVVLEIGSADLSFVASLL---AKE-VLTLTVGLKDDLVDLAQVALER-GFPAVVSPLGNRRLP--F--PSGVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La---~~~-V~gmDIsp~D~seamlq~A~eR-GL~~i~~~~dt~~LP--F--pD~SFDlVhc 378 (689)
.+.+||=+|+-+|.-..... +.+ ++++.++|... ...+..|.+| ++..++..+ +.| | --...|+|.+
T Consensus 76 ~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~-reLl~~a~~R~Ni~PIL~DA---~~P~~Y~~~Ve~VDviy~ 151 (231)
T COG1889 76 EGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPM-RELLDVAEKRPNIIPILEDA---RKPEKYRHLVEKVDVIYQ 151 (231)
T ss_pred CCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhH-HHHHHHHHhCCCceeeeccc---CCcHHhhhhcccccEEEE
Confidence 45789999999997666554 444 89999999754 5678888887 444444433 333 1 1245888875
Q ss_pred ccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 379 DGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
- ...+ .....+...+..-||+||+++++..
T Consensus 152 D-VAQp--~Qa~I~~~Na~~FLk~~G~~~i~iK 181 (231)
T COG1889 152 D-VAQP--NQAEILADNAEFFLKKGGYVVIAIK 181 (231)
T ss_pred e-cCCc--hHHHHHHHHHHHhcccCCeEEEEEE
Confidence 3 1111 1234567788999999998888753
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=81.77 E-value=11 Score=42.31 Aligned_cols=118 Identities=26% Similarity=0.293 Sum_probs=65.7
Q ss_pred HHHHHHHhhcccccCC-CCCCeEEEECCccchhHHHhhc----C----CeEEEEcCCcccHHHHHHHHHHcCCCcE--Ee
Q 044932 291 HYLESIEEMVPDIEWG-KNIRVVLEIGSADLSFVASLLA----K----EVLTLTVGLKDDLVDLAQVALERGFPAV--VS 359 (689)
Q Consensus 291 ~Yid~L~~~Lp~l~~G-~~~R~VLDVGCGtGsfaa~La~----~----~V~gmDIsp~D~seamlq~A~eRGL~~i--~~ 359 (689)
.|...-.+|+|.+.-+ .+..+||||.+-.|+=++.|++ . .|++=|+++. ...|+.....|--... +.
T Consensus 137 i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~--R~~~L~~q~~~l~~~~~~v~ 214 (375)
T KOG2198|consen 137 IYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPK--RLNMLVHQLKRLPSPNLLVT 214 (375)
T ss_pred chhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHH--HHHHHHHHHhccCCcceeee
Confidence 3444555677743211 1457899999999987766654 2 3566677653 2345555554421111 11
Q ss_pred -----cCCCCCC----CCCCCCcceEEec-ccc-----------cc--cccc--------HHHHHHHHHhccCCCcEEEE
Q 044932 360 -----PLGNRRL----PFPSGVFDAIHCD-GCS-----------IT--WHAH--------GGKLLLEMNRILRPSGYFIL 408 (689)
Q Consensus 360 -----~~dt~~L----PFpD~SFDlVhcs-~cl-----------i~--W~~d--------~~~aL~EI~RVLRPGG~fVI 408 (689)
.+....+ ++.--.||-|.|- -|. .. |... --.+|.--.|.||+||.++.
T Consensus 215 ~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVY 294 (375)
T KOG2198|consen 215 NHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVY 294 (375)
T ss_pred cccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEE
Confidence 1111111 2444579999862 111 11 1110 12467778899999999999
Q ss_pred Ec
Q 044932 409 ST 410 (689)
Q Consensus 409 sd 410 (689)
|+
T Consensus 295 ST 296 (375)
T KOG2198|consen 295 ST 296 (375)
T ss_pred ec
Confidence 97
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=81.21 E-value=1.8 Score=42.30 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=31.7
Q ss_pred cHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcc-eeEEEeeccccCceeEEEEEeC
Q 044932 388 HGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASIC-WNILAHKTDEISEMGVKIYQKP 451 (689)
Q Consensus 388 d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~-W~~v~~~~~~~g~~~i~IwqKp 451 (689)
-....|.|+.|||||||.++|......... ..+..+.+.++ |.... ..+|.|+
T Consensus 34 ~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~-~~~~~~~~~~g~~~~~~----------~iiW~K~ 87 (231)
T PF01555_consen 34 WMEEWLKECYRVLKPGGSIFIFIDDREIAG-FLFELALEIFGGFFLRN----------EIIWNKP 87 (231)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEE-CCEECT-HHHHHHHHHHTT-EEEE----------EEEEE-S
T ss_pred HHHHHHHHHHhhcCCCeeEEEEecchhhhH-HHHHHHHHHhhhhheec----------cceeEec
Confidence 345789999999999999999866543321 01233444445 65432 3677776
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=80.29 E-value=2.1 Score=44.90 Aligned_cols=98 Identities=10% Similarity=0.134 Sum_probs=50.3
Q ss_pred CeeEEeecCCcchhHHHHhccCC-ceEEEeccCCC-CCchhhhhccccchh------------h-ccccCCCCCCCccch
Q 044932 546 KIRNVMDMKSIYGGFAAALAQQK-IWVMNVVPVHA-PDTLPVIYDRGLVGI------------Y-HDWCESFGTYPRSYD 610 (689)
Q Consensus 546 ~iRNvmDMna~~GgFAAal~~~~-vWVMNvvp~~~-~~tL~vI~~RGLig~------------y-hdwce~f~typrTyD 610 (689)
.-++|+++++|.|+++..+...+ +- +|+-++. ++.+... |-.++. . .|--+-+...+++||
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~--~v~~veid~~vi~~a--~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yD 147 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVE--KATLVDIDEKVIELS--KKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFD 147 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcc--eEEEEeCCHHHHHHH--HHHhHhhcccccCCceEEEECchHHHHHhCCCCcc
Confidence 34589999999999998776553 32 2222221 1111111 111111 1 111111123478999
Q ss_pred hhccccccccccCCcCC-ccceeeeeccccccCcEEEEe
Q 044932 611 LLHADHLFSRLKSRCRQ-PVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 611 LlHa~~lfs~~~~~c~~-~~~illEmDRILRP~G~~iir 648 (689)
+|=++.... ....-.+ ....+-.+-|+|+|||.+++.
T Consensus 148 vIi~D~~~~-~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 148 VIIVDSTDP-VGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEEEeCCCC-CCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 986654321 1111110 022344677999999999987
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=80.18 E-value=7.9 Score=42.13 Aligned_cols=98 Identities=14% Similarity=-0.005 Sum_probs=56.5
Q ss_pred CCeEEEECCcc-chhHHHhhc---CC-eEEEEcCCcccHHHHHHHHHHc-CCCcEEecCCC----CCC-CC-CCCCcceE
Q 044932 309 IRVVLEIGSAD-LSFVASLLA---KE-VLTLTVGLKDDLVDLAQVALER-GFPAVVSPLGN----RRL-PF-PSGVFDAI 376 (689)
Q Consensus 309 ~R~VLDVGCGt-Gsfaa~La~---~~-V~gmDIsp~D~seamlq~A~eR-GL~~i~~~~dt----~~L-PF-pD~SFDlV 376 (689)
..+||.+|||. |.++..++. .. |++++.+ +.+++.+.+. +.. .+..... ..+ .+ ..+.+|+|
T Consensus 185 g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~-----~~~~~~~~~~~~~~-vi~~~~~~~~~~~l~~~~~~~~~D~v 258 (386)
T cd08283 185 GDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRV-----PERLEMARSHLGAE-TINFEEVDDVVEALRELTGGRGPDVC 258 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC-----HHHHHHHHHcCCcE-EEcCCcchHHHHHHHHHcCCCCCCEE
Confidence 46899999987 666655553 22 6666544 3567777776 332 1111100 001 12 23469988
Q ss_pred Eecccc----c----------cccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 377 HCDGCS----I----------TWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 377 hcs~cl----i----------~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+..-.. . .-..+....+.++.|.|+|+|.+++....
T Consensus 259 ld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~~ 308 (386)
T cd08283 259 IDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGVY 308 (386)
T ss_pred EECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcCC
Confidence 743100 0 00123456899999999999999988643
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 689 | |||
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 8e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-08 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 1e-06 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 3e-06 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 1e-05 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 2e-05 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 2e-05 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 2e-05 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 3e-05 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 3e-05 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 5e-05 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 1e-04 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 1e-04 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 1e-04 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 1e-04 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 1e-04 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 2e-04 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 3e-04 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 4e-04 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 5e-04 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 5e-04 |
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 8e-09
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 18/115 (15%)
Query: 303 IEWGKNIRVVLEI--GSADLSFVASLLAKEVLTLTVGLKDDLVDLA----QVALERGFPA 356
E+ KN VL++ G+ S L + + LVD + +VA E+G
Sbjct: 49 EEYLKNPCRVLDLGGGTGKWSL---FLQERGFEVV------LVDPSKEMLEVAREKGVKN 99
Query: 357 VVSPLGN-RRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410
VV LPFPSG F+A+ G +++ + K E+ R+L P G I +
Sbjct: 100 VV--EAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATV 152
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 5e-08
Identities = 88/623 (14%), Positives = 168/623 (26%), Gaps = 177/623 (28%)
Query: 65 VTVIKHESRKKNEKTVPNVKKQKHTVKSVNEETNEENEKSESDDSLKE-DEEEQEQEVVD 123
+++ + K V + K E D + D +
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDN-FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 124 ---GKEEESVRESEVNGETEGD----VDLVQQENEQ-SVVTVEGESGRSRSTGKKRKV-K 174
K+EE V++ V + + ++ E Q S++T R R + K
Sbjct: 70 TLLSKQEEMVQKF-VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 175 GPVFDPKAHYSWK--LCSTRSKHNYIPCIDNESGFGKFQSYRHTERSCPRSHL---MCLV 229
V + + + L R + ID G GK + + +CL
Sbjct: 129 YNVSRLQPYLKLRQALLELRP-AKNV-LIDGVLGSGK---------TW----VALDVCLS 173
Query: 230 PLPHAGYGSPVSW--------PDSRLKILYKNVAHPKLAAYIKKHNWLVESGEYLTFPQN 281
+ W P++ L++L KL I NW S
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQ------KLLYQIDP-NWTSRSDHSSNIKLR 226
Query: 282 QSEFKGGVLHYLESIEEMVP-------DIEWGKNIRVVLEIG------SADLSFVASLLA 328
+ + L+ + ++ + + L A
Sbjct: 227 IHSIQAELRRLLK--SKPYENCLLVLLNV-QNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 329 --------------------KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPF 368
K +L + + DL + L P +S +
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ--DLPREVL-TTNPRRLSIIAESIRDG 340
Query: 369 PSGVFDAIHCDGCSITW----HAHGGKL--LLEMN-RILRPSG----YFILSTKHDSI-E 416
+ TW H + KL ++E + +L P+ + L S+
Sbjct: 341 LA-------------TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL-----SVFP 382
Query: 417 EEEALTTLTASICWNILAHKTDEISEMGVK--------------------IYQ--KPESN 454
+ T+ S+ W ++ + K IY K +
Sbjct: 383 PSAHIPTILLSLIWF--DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 455 DIYELRRK----KNPPLCKENENP-----DAAWYVPMKTCLHTIPSSIEQH--GTEWPEE 503
+ Y L R N P ++++ D +Y S I H E PE
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY-----------SHIGHHLKNIEHPER 489
Query: 504 WPKRLETYPD--WLNDKEKLSSDTRHWKAIVDRSYLTGLGIDWSKIRN-VMDMKSIYGGF 560
+ D +L ++K+ D+ W A + + + D Y
Sbjct: 490 MTLFRMVFLDFRFL--EQKIRHDSTAWNA---SGSILNTLQQLKFYKPYICDNDPKYERL 544
Query: 561 AAALAQQKIWVMNVVPVHAPDTL 583
A+ ++ +P + +
Sbjct: 545 VNAI-------LDFLPKIEENLI 560
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 17/107 (15%)
Query: 312 VLEI--GSADLSFVASLLAKEVLTLTVGLKDDLVD--LAQV---ALERGFPAVVSPLGN- 363
VL+I G+ + S +E +G+ D + A E+G V G
Sbjct: 25 VLDIGAGAGHTALAFSPYVQEC----IGV--DATKEMVEVASSFAQEKGVENVRFQQGTA 78
Query: 364 RRLPFPSGVFDAIHCDGCSITWH-AHGGKLLLEMNRILRPSGYFILS 409
LPFP FD I C + H + K + E+ R+L+ G F+L
Sbjct: 79 ESLPFPDDSFDIITC-RYAA-HHFSDVRKAVREVARVLKQDGRFLLV 123
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 3e-06
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 18/117 (15%)
Query: 312 VLEI--GSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVVSP-----LGN- 363
VL++ G ++ S + VG VD+++V +++G P G+
Sbjct: 57 VLDVGCGDGYGTYKLSRTGYKA----VG-----VDISEVMIQKGKERGEGPDLSFIKGDL 107
Query: 364 RRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEA 420
LPF + F+AI S+ W + L E+ R+L+ GY ++ + + E
Sbjct: 108 SSLPFENEQFEAIMA-INSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPREN 163
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 1e-05
Identities = 25/132 (18%), Positives = 51/132 (38%), Gaps = 27/132 (20%)
Query: 293 LESIEEMVPDIEWGKNIRVVLEI--GSADLSF-VASLLAKEVLTLTVGLKDDLVDLAQVA 349
++ M+P++ G ++++ G A V +G +DL++
Sbjct: 32 WPALRAMLPEVG-GLR---IVDLGCGFGWFCRWAHEHGASYV----LG-----LDLSEKM 78
Query: 350 LER--------GFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILR 401
L R G + L +L P FD + ++ + +L +++ L
Sbjct: 79 LARARAAGPDTGITYERADL--DKLHLPQDSFDLAYS-SLALHYVEDVARLFRTVHQALS 135
Query: 402 PSGYFILSTKHD 413
P G+F+ ST+H
Sbjct: 136 PGGHFVFSTEHP 147
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 22/124 (17%)
Query: 292 YLESIEEMVPDIEWGKNIRVVLEI--GSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVA 349
LE EE +P+I GK V+++ G+ A ++ +D+ +A
Sbjct: 2 SLERPEEYLPNIFEGKK-GVIVDYGCGNGFYCKYLLEFATKL----YC-----IDINVIA 51
Query: 350 LERG---FPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWH--AHGGKLLLEMNRILRPSG 404
L+ F +V++ P D I + ++H ++ E+ RIL+ G
Sbjct: 52 LKEVKEKFDSVITLSDP--KEIPDNSVDFILF---ANSFHDMDDKQHVISEVKRILKDDG 106
Query: 405 YFIL 408
I+
Sbjct: 107 RVII 110
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 17/106 (16%)
Query: 312 VLEI--GSADLSFVASLLAKEVLTLTVGLKDDLVD--LAQV---ALERGFPAVVSPLGN- 363
VL++ G ++ + K+V V DL + L G V G+
Sbjct: 41 VLDVATGGGHVANAFAPFVKKV----VAF--DLTEDILKVARAFIEGNGHQQVEYVQGDA 94
Query: 364 RRLPFPSGVFDAIHCDGCSITWH-AHGGKLLLEMNRILRPSGYFIL 408
++PF F + C + H + + E R+L+ G +L
Sbjct: 95 EQMPFTDERFHIVTC-RIAA-HHFPNPASFVSEAYRVLKKGGQLLL 138
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 2e-05
Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 23/130 (17%)
Query: 293 LESIEEMVPDIEWGKNIRVVLEI--GSADLS-FVASLLAKEVLTLTVGLKDDLVDLAQVA 349
+++M+PD K VL++ G + A AK+V +G +DL++
Sbjct: 33 WHELKKMLPDFN-QKT---VLDLGCGFGWHCIYAAEHGAKKV----LG-----IDLSERM 79
Query: 350 LER-----GFPAVVSPLGN-RRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPS 403
L P V + ++ + ++ + A + ++ L+ S
Sbjct: 80 LTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLS-SLALHYIASFDDICKKVYINLKSS 138
Query: 404 GYFILSTKHD 413
G FI S +H
Sbjct: 139 GSFIFSVEHP 148
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 3e-05
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 6/77 (7%)
Query: 343 VDLAQVALE---RGFPAVVSPLGN-RRLPFPSGVFDAIHCDGCSITWHAHGG--KLLLEM 396
DL + ++ + FP +G+ FD I G + + A G L +
Sbjct: 74 TDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANI 133
Query: 397 NRILRPSGYFILSTKHD 413
+R L G ++
Sbjct: 134 HRALGADGRAVIGFGAG 150
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 18/108 (16%)
Query: 312 VLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALER--------GFPAVVSP-LG 362
+ +IG LA V G +DL +E V G
Sbjct: 50 IADIGCG-TGGQTLFLADYVKGQITG-----IDLFPDFIEIFNENAVKANCADRVKGITG 103
Query: 363 N-RRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILS 409
+ LPF + D I +G ++ + + E ++ L+ G+ +S
Sbjct: 104 SMDNLPFQNEELDLIWSEGA--IYNIGFERGMNEWSKYLKKGGFIAVS 149
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 5e-05
Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 18/105 (17%)
Query: 312 VLEI--GSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERG---FPAVVSPLGN-RR 365
+LE+ G+ L + VG V+ ++ L G P
Sbjct: 40 LLEVGAGTGYWL--RRLPYPQK----VG-----VEPSEAMLAVGRRRAPEATWVRAWGEA 88
Query: 366 LPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410
LPFP FD + ++ + ++LLE R+LRP G ++
Sbjct: 89 LPFPGESFDVVLL-FTTLEFVEDVERVLLEARRVLRPGGALVVGV 132
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 1e-04
Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 5/72 (6%)
Query: 364 RRLPFPSGVFDAIHCDGCSITWHAHG---GKLLLEMNRILRPSGYFILSTKHDSIEEEEA 420
R+LPF ++ +H + + E+ R+L+P G ++ E
Sbjct: 81 RKLPFKDESMSFVYS--YGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNK 138
Query: 421 LTTLTASICWNI 432
+ +
Sbjct: 139 GEKIGEGEFLQL 150
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 21/110 (19%)
Query: 312 VLEIGS--ADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFP-AVVSPLGNR---- 364
++IGS LS LAK+ +D ++ E + L +R
Sbjct: 47 CIDIGSGPGALSI---ALAKQS-----DFSIRALDFSKHMNEIALKNIADANLNDRIQIV 98
Query: 365 -----RLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILS 409
+P D I S+ + E+ RIL+ G +
Sbjct: 99 QGDVHNIPIEDNYADLIVS-RGSVFFWEDVATAFREIYRILKSGGKTYIG 147
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 18/108 (16%)
Query: 312 VLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALER--------GFPAVVSPL-G 362
+ +IG +LA V G +D ++ G V+ + G
Sbjct: 50 IADIGCG-TGGQTMVLAGHVTGQVTG-----LDFLSGFIDIFNRNARQSGLQNRVTGIVG 103
Query: 363 N-RRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILS 409
+ LPF + D I +G ++ + L E + L+ GY +S
Sbjct: 104 SMDDLPFRNEELDLIWSEGA--IYNIGFERGLNEWRKYLKKGGYLAVS 149
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 1e-04
Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 22/98 (22%)
Query: 364 RRLPFPSGVFDAIHCDGCSITWHAHG---GKLLLEMNRILRPSGYFILSTKHDSIEEEEA 420
R+L F FD + H ++ E+ R+L+PSG FI+
Sbjct: 95 RKLSFEDKTFDYVIF--IDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYF---------- 142
Query: 421 LTTLTASICWNILAHKTDEISEMGVKIYQKPESNDIYE 458
L + E +G K + D E
Sbjct: 143 -------TDLRELLPRLKESLVVGQKYWISKVIPDQEE 173
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 1e-04
Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 343 VDLAQVALE--RGFPAVVSPLGN-RRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRI 399
V+ + V + P V G L P D + +I +H K EM RI
Sbjct: 62 VEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVIS-ILAIHHFSHLEKSFQEMQRI 120
Query: 400 LRPSGYFILS 409
+R +L+
Sbjct: 121 IRDGTIVLLT 130
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 24/109 (22%), Positives = 35/109 (32%), Gaps = 18/109 (16%)
Query: 312 VLEI--GSADLSFVASLLAKEVLTLTVGLKDDL----VDLAQVALERGFPAVVSPLGNRR 365
VL++ G L + E VG+ D VD A+ A
Sbjct: 56 VLDLGCGEGWLLRALADRGIEA----VGV--DGDRTLVDAARAAGAGEVHLASYAQLAEA 109
Query: 366 LPFPSGVFDAIHCDGCSIT--WHAHGGKLLLEMNRILRPSGYFILSTKH 412
+D I C+ H +LL M +L P G ++ T H
Sbjct: 110 KVPVGKDYDLI----CANFALLHQDIIELLSAMRTLLVPGGALVIQTLH 154
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 13/107 (12%)
Query: 312 VLEIGS--ADLSFVASLLAKEVLTLTV-GL--KDDLVDLA-QVALERGFPAVVSPLGN-R 364
VLE G + +LAK + + + ++ A + + G V N
Sbjct: 41 VLEAGCGIGAQTV---ILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIF 97
Query: 365 RLPFPSGVFDAIHCDGCSITWH-AHGGKLLLEMNRILRPSGYFILST 410
LPF FD I C + H + L + ++L+P G +
Sbjct: 98 SLPFEDSSFDHIFV--CFVLEHLQSPEEALKSLKKVLKPGGTITVIE 142
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 4e-04
Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 18/114 (15%)
Query: 310 RVVLEI--GSADLSFVASLLAKEVLTLTVGLKDDL----VDLAQVALERGFPAVVSPLGN 363
V LE+ G+ ++ + L D +++ + + V +
Sbjct: 41 PVFLELGVGTGRIALPLIARGYRY----IAL--DADAAMLEVFRQKIAGVDRKVQVVQAD 94
Query: 364 -RRLPFPSGVFDAIHCDGCSITWH--AHGGKLLLEMNRILRPSGYFILSTKHDS 414
R +P P + WH K+L E R+L+P G +
Sbjct: 95 ARAIPLPDESVHGVI---VVHLWHLVPDWPKVLAEAIRVLKPGGALLEGWDQAE 145
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 12/82 (14%), Positives = 25/82 (30%), Gaps = 7/82 (8%)
Query: 343 VDLAQVALE---RGFPAVVSPLGN-RRLPFPSGVFDAIHCDGCSITWHAHG--GKLLLEM 396
++ A +E + P+V G L + + S+ G L+ +
Sbjct: 69 LEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLA-WYSLIHMGPGELPDALVAL 127
Query: 397 NRILRPSGYFILSTKHDSIEEE 418
+ G ++S E
Sbjct: 128 RMAVEDGGGLLMSFFSGPSLEP 149
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 5e-04
Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 12/107 (11%)
Query: 311 VVLEIGS--ADLSFVASLLAKEV-LTLTVGLKD---DLVDLA-QVALERGFPAVVSPLGN 363
VL++G+ L+K V V D ++V+ A + + G V
Sbjct: 40 TVLDVGTGAGFYLP---YLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSE 96
Query: 364 -RRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILS 409
++P P D I + + K L E+ R+ +P Y +
Sbjct: 97 ENKIPLPDNTVDFIFM-AFTFHELSEPLKFLEELKRVAKPFAYLAII 142
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 689 | |||
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.58 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.57 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.56 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.55 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.55 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.55 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.53 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.53 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.52 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.52 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.51 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.51 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.5 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.5 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.5 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.5 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.49 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.49 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.49 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.49 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.49 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.48 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.48 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.48 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.48 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.47 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.47 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.47 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.45 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.45 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.45 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.44 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.44 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.44 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.43 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.43 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.43 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.43 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.43 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.43 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.43 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.42 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.42 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.41 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.41 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.41 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.41 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.4 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.4 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.4 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.39 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.39 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.39 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.38 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.38 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.38 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.38 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.37 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.36 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.36 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.36 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.36 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.35 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.35 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.35 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.33 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.33 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.33 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.32 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.32 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.32 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.32 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.31 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.3 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.3 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.3 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.3 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.29 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.28 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.28 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.28 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.27 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.26 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.24 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.24 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.24 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.23 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.23 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.22 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.22 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.21 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.2 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.2 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.2 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.19 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.19 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.19 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.19 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.18 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.18 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.18 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.18 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.18 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.17 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.17 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.16 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.16 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.16 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.15 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.14 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.14 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.14 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.13 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.12 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.12 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.12 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.12 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.11 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.11 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.1 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.09 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.09 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.08 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.07 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.07 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.05 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.05 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.05 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.05 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.05 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.04 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.04 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.04 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.04 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.03 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.03 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.02 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.02 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.02 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.01 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.0 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.0 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.99 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 98.97 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.97 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.97 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.96 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 98.96 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.96 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 98.95 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 98.95 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.94 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.94 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.94 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.94 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.94 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.92 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.92 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.92 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 98.92 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.91 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 98.91 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.91 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.91 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.9 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.9 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.9 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.89 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.89 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.88 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.87 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.86 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.86 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 98.86 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.86 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.86 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.85 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.85 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.85 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.84 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.83 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.83 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 98.83 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 98.82 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.82 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.82 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.82 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.81 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.81 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.8 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.8 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.79 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.78 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.78 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.77 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.77 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.77 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.76 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.76 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.74 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.74 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.73 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.72 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.71 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.71 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.7 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.7 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.7 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.69 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.68 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.68 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.67 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.67 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.67 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.63 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.63 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.62 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.62 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.61 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.6 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.6 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.59 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.59 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.59 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.57 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.57 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.57 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.57 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.55 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.54 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.53 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.51 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.5 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.5 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.46 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.44 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.44 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.43 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.43 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.42 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.42 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.41 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.39 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.38 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.37 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.35 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.35 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.3 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.27 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.25 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.2 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.16 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.14 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.04 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 97.86 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.85 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 97.84 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 97.84 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 97.83 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 97.83 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 97.82 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 97.78 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 97.73 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 97.72 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.65 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.65 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 97.54 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 97.54 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 97.52 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 97.48 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 97.48 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.46 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 97.45 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 97.42 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.42 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 97.39 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.39 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 97.34 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 97.32 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.31 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 97.3 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.3 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 97.28 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 97.27 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.26 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 97.25 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 97.21 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.2 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 97.19 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 97.17 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 97.15 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 97.15 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 97.15 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.14 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 97.13 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 97.12 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 97.12 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 97.12 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 97.11 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.1 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 97.09 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 97.07 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 97.07 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 97.06 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 97.06 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 97.05 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 97.05 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 97.03 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 97.02 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.02 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 97.01 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.0 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 97.0 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 97.0 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 96.96 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 96.95 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 96.95 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 96.92 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 96.91 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 96.91 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 96.88 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 96.86 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 96.85 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 96.85 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 96.85 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 96.84 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 96.84 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 96.82 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 96.82 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 96.81 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 96.79 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 96.79 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 96.77 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 96.77 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 96.76 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 96.76 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 96.75 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 96.74 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 96.71 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 96.71 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 96.66 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 96.65 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 96.64 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 96.62 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 96.61 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 96.61 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 96.6 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 96.58 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 96.58 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 96.52 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 96.47 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 96.45 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 96.44 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 96.44 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 96.42 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 96.4 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 96.38 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 96.37 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 96.36 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 96.36 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 96.35 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 96.33 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 96.33 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 96.33 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 96.32 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 96.32 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 96.31 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 96.29 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 96.28 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 96.27 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 96.26 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 96.22 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 96.21 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 96.21 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 96.2 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 96.18 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 96.17 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 96.16 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 96.14 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 96.13 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 96.11 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 96.09 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 96.08 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 96.08 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 96.08 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 96.02 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 96.02 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 95.99 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 95.97 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 95.96 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 95.95 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 95.93 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 95.91 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 95.91 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 95.89 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 95.85 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 95.83 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 95.79 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 95.79 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 95.76 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 95.76 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 95.71 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 95.71 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 95.7 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 95.65 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 95.64 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 95.61 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 95.51 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 95.46 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 95.41 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 95.36 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 95.35 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 95.26 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 95.21 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 95.16 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 95.13 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 95.05 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 95.04 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 94.96 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 94.89 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 94.89 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 94.86 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 94.84 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 94.79 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 94.77 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 94.76 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 94.74 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 94.67 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 94.66 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 94.65 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 94.62 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 94.51 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 94.5 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 94.43 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 94.35 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 94.34 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 94.34 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 94.33 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 94.28 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.24 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 94.22 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 94.17 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 94.12 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 94.09 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 93.98 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 93.91 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 93.91 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 93.88 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 93.85 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 93.82 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 93.76 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 93.65 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 93.64 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 93.63 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 93.62 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 93.61 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 93.6 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 93.45 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 93.4 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 93.35 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 93.31 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 93.28 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 93.27 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 93.19 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 93.19 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 93.16 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 93.12 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 93.11 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 93.07 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 93.06 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 93.04 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 93.03 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 93.02 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 93.01 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 92.96 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 92.93 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 92.76 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 92.62 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 92.6 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 92.29 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 92.28 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 92.19 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 92.03 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 91.95 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 91.91 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 91.86 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 91.77 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 91.75 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 91.63 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 91.56 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 91.41 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 91.4 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 91.31 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 91.31 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 91.26 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 91.18 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 91.05 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 90.95 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 90.83 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 90.23 |
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-15 Score=152.30 Aligned_cols=96 Identities=17% Similarity=0.168 Sum_probs=78.1
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecccccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWH 386 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~ 386 (689)
..+|||||||+|.++..|+.. .|+|+|+++ .|++.|.++ ....+...+++.+||++++||+|+|+.++ ||.
T Consensus 40 ~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~-----~ml~~a~~~-~~v~~~~~~~e~~~~~~~sfD~v~~~~~~-h~~ 112 (257)
T 4hg2_A 40 RGDALDCGCGSGQASLGLAEFFERVHAVDPGE-----AQIRQALRH-PRVTYAVAPAEDTGLPPASVDVAIAAQAM-HWF 112 (257)
T ss_dssp SSEEEEESCTTTTTHHHHHTTCSEEEEEESCH-----HHHHTCCCC-TTEEEEECCTTCCCCCSSCEEEEEECSCC-TTC
T ss_pred CCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcH-----Hhhhhhhhc-CCceeehhhhhhhcccCCcccEEEEeeeh-hHh
Confidence 458999999999999999875 589999875 577776543 23445567788999999999999998665 766
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 387 AHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 387 ~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
++..+|.|+.|||||||+|++....
T Consensus 113 -~~~~~~~e~~rvLkpgG~l~~~~~~ 137 (257)
T 4hg2_A 113 -DLDRFWAELRRVARPGAVFAAVTYG 137 (257)
T ss_dssp -CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -hHHHHHHHHHHHcCCCCEEEEEECC
Confidence 5778999999999999999987643
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-14 Score=136.55 Aligned_cols=126 Identities=12% Similarity=0.054 Sum_probs=99.5
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecccccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWH 386 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~ 386 (689)
..+|||+|||+|.++..|+.. .|+++|+++ .|++.|.++.....+...+...+|+++++||+|+|..++.++.
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~-----~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 116 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPAT-----RLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMG 116 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTCCEEEECCCH-----HHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCC
T ss_pred CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCH-----HHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCC
Confidence 468999999999999888765 588998875 6888888875555566677788899999999999987665533
Q ss_pred -ccHHHHHHHHHhccCCCcEEEEEcCCCc-------------hhHHHHHHHHHHhcceeEEEeeccc
Q 044932 387 -AHGGKLLLEMNRILRPSGYFILSTKHDS-------------IEEEEALTTLTASICWNILAHKTDE 439 (689)
Q Consensus 387 -~d~~~aL~EI~RVLRPGG~fVIsdp~~~-------------le~~~~ie~La~~l~W~~v~~~~~~ 439 (689)
.+...+|.++.|+|||||+|++..+... ......+..+++..+|+.+......
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 183 (203)
T 3h2b_A 117 PGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDP 183 (203)
T ss_dssp TTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECT
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecC
Confidence 3788999999999999999999874321 1234568899999999998765543
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=5.3e-14 Score=139.14 Aligned_cols=157 Identities=15% Similarity=0.122 Sum_probs=111.2
Q ss_pred cchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCC
Q 044932 285 FKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLG 362 (689)
Q Consensus 285 F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~d 362 (689)
|...+....+.|...++ ...+|||||||+|.++..|+.. .|+++|+++ .+++.|.++.....+...+
T Consensus 33 ~~~~~~~~~~~l~~~~~------~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~-----~~~~~a~~~~~~~~~~~~d 101 (263)
T 3pfg_A 33 YHREAADLAALVRRHSP------KAASLLDVACGTGMHLRHLADSFGTVEGLELSA-----DMLAIARRRNPDAVLHHGD 101 (263)
T ss_dssp HHHHHHHHHHHHHHHCT------TCCEEEEETCTTSHHHHHHTTTSSEEEEEESCH-----HHHHHHHHHCTTSEEEECC
T ss_pred HHHHHHHHHHHHHhhCC------CCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCH-----HHHHHHHhhCCCCEEEECC
Confidence 33444444444444433 3478999999999999998875 488999875 5788888774445556667
Q ss_pred CCCCCCCCCCcceEEecccccccc---ccHHHHHHHHHhccCCCcEEEEEcCC--C------------------------
Q 044932 363 NRRLPFPSGVFDAIHCDGCSITWH---AHGGKLLLEMNRILRPSGYFILSTKH--D------------------------ 413 (689)
Q Consensus 363 t~~LPFpD~SFDlVhcs~cli~W~---~d~~~aL~EI~RVLRPGG~fVIsdp~--~------------------------ 413 (689)
...+|+ +++||+|+|....+++. .+...+|.++.|+|||||+|+|.... .
T Consensus 102 ~~~~~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (263)
T 3pfg_A 102 MRDFSL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSH 180 (263)
T ss_dssp TTTCCC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEE
T ss_pred hHHCCc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEE
Confidence 778888 69999999986344544 35668899999999999999996310 0
Q ss_pred -------------c-------------------hhHHHHHHHHHHhcceeEEEeeccccCceeEEEEEeCCCc
Q 044932 414 -------------S-------------------IEEEEALTTLTASICWNILAHKTDEISEMGVKIYQKPESN 454 (689)
Q Consensus 414 -------------~-------------------le~~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqKp~~~ 454 (689)
+ ....+++..+++..||+++..... .+...+.+.+||...
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~-~~~~~~~va~K~a~~ 252 (263)
T 3pfg_A 181 SSREGEATRIEVHYLVAGPDRGITHHEESHRITLFTREQYERAFTAAGLSVEFMPGG-PSGRGLFTGLPGAKG 252 (263)
T ss_dssp EEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESST-TTSSCEEEEEECC--
T ss_pred EEecCcEEEEEEEEEEecCCCcEEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCC-CCCceeEEEecCCCC
Confidence 0 002467999999999998765443 345668999998653
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.55 E-value=7e-14 Score=133.87 Aligned_cols=139 Identities=13% Similarity=0.108 Sum_probs=103.2
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCC-CcEEecCCCCCCCCCCCCcceEEecccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGF-PAVVSPLGNRRLPFPSGVFDAIHCDGCSIT 384 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL-~~i~~~~dt~~LPFpD~SFDlVhcs~cli~ 384 (689)
...+|||+|||+|.++..|+.. .|+++|+++ .+++.|.++.. ...+...+...+|++ ++||+|+|..++ +
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l-~ 117 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSR-----EMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVSTYAF-H 117 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCH-----HHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEESCG-G
T ss_pred CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCH-----HHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEECcch-h
Confidence 3568999999999999888865 588888875 57777777633 334556677888998 999999998654 4
Q ss_pred ccccHHH--HHHHHHhccCCCcEEEEEcCCCc----------------------------hhHHHHHHHHHHhcceeEEE
Q 044932 385 WHAHGGK--LLLEMNRILRPSGYFILSTKHDS----------------------------IEEEEALTTLTASICWNILA 434 (689)
Q Consensus 385 W~~d~~~--aL~EI~RVLRPGG~fVIsdp~~~----------------------------le~~~~ie~La~~l~W~~v~ 434 (689)
+..++.. +|.++.|+|||||++++.++... ....+.+..+++..+|+++.
T Consensus 118 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~ 197 (220)
T 3hnr_A 118 HLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTF 197 (220)
T ss_dssp GSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEE
T ss_pred cCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEE
Confidence 4556655 99999999999999999974310 00125688999999998876
Q ss_pred eeccccCceeEEEEEeCCCch
Q 044932 435 HKTDEISEMGVKIYQKPESND 455 (689)
Q Consensus 435 ~~~~~~g~~~i~IwqKp~~~~ 455 (689)
.... +...++..+|+..++
T Consensus 198 ~~~~--~~~w~~~~~~~~~~~ 216 (220)
T 3hnr_A 198 TRLN--HFVWVMEATKQLEHH 216 (220)
T ss_dssp EECS--SSEEEEEEEECSCCC
T ss_pred eecc--ceEEEEeehhhhhhh
Confidence 5432 456678888876543
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.1e-14 Score=134.63 Aligned_cols=134 Identities=16% Similarity=0.186 Sum_probs=97.7
Q ss_pred eEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHc----CCC--cEEecCCCCCCCCCCCCcceEEeccc
Q 044932 311 VVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALER----GFP--AVVSPLGNRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 311 ~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eR----GL~--~i~~~~dt~~LPFpD~SFDlVhcs~c 381 (689)
+|||+|||+|.++..|+.. .|+++|+++ .+++.|.++ ++. ..+...+...+|+++++||+|+|..+
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~-----~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 120 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQSDFSIRALDFSK-----HMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGS 120 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHSEEEEEEEESCH-----HHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESC
T ss_pred EEEEECCCCCHHHHHHHHcCCCeEEEEECCH-----HHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECch
Confidence 8999999999998888764 588999876 355555443 543 44556677889999999999999866
Q ss_pred cccccccHHHHHHHHHhccCCCcEEEEEcCCCc---------------------------hhHHHHHHHHHHhcceeEEE
Q 044932 382 SITWHAHGGKLLLEMNRILRPSGYFILSTKHDS---------------------------IEEEEALTTLTASICWNILA 434 (689)
Q Consensus 382 li~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~---------------------------le~~~~ie~La~~l~W~~v~ 434 (689)
+.+ ..++..+|.++.|+|||||++++.+.... ....+.+..+++..+|+.+.
T Consensus 121 l~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 199 (219)
T 3dlc_A 121 VFF-WEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYE 199 (219)
T ss_dssp GGG-CSCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEE
T ss_pred Hhh-ccCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEE
Confidence 544 57889999999999999999999853210 01225688899999998765
Q ss_pred eeccccCceeEEEEEeCC
Q 044932 435 HKTDEISEMGVKIYQKPE 452 (689)
Q Consensus 435 ~~~~~~g~~~i~IwqKp~ 452 (689)
.... ......+.+|+.
T Consensus 200 ~~~~--~~~~~~~~~k~~ 215 (219)
T 3dlc_A 200 IILG--DEGFWIIISKTD 215 (219)
T ss_dssp EEEE--TTEEEEEEBCCS
T ss_pred EEec--CCceEEEEeccc
Confidence 4332 223355556654
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.55 E-value=9.8e-15 Score=142.46 Aligned_cols=143 Identities=13% Similarity=0.095 Sum_probs=101.7
Q ss_pred cchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCC---CcEE
Q 044932 285 FKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGF---PAVV 358 (689)
Q Consensus 285 F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL---~~i~ 358 (689)
+......++..+...++. ....+|||||||+|.++..|+.. .|+++|+++ .+++.|.++.. ...+
T Consensus 74 ~~~~~~~~~~~~l~~l~~----~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~ 144 (254)
T 1xtp_A 74 VHDVDIEGSRNFIASLPG----HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVK-----HMLEEAKRELAGMPVGKF 144 (254)
T ss_dssp GHHHHHHHHHHHHHTSTT----CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCH-----HHHHHHHHHTTTSSEEEE
T ss_pred cCHHHHHHHHHHHHhhcc----cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCH-----HHHHHHHHHhccCCceEE
Confidence 333334455544444431 14579999999999998887753 489999875 57777777632 2344
Q ss_pred ecCCCCCCCCCCCCcceEEecccccccc-ccHHHHHHHHHhccCCCcEEEEEcCCC-------------chhHHHHHHHH
Q 044932 359 SPLGNRRLPFPSGVFDAIHCDGCSITWH-AHGGKLLLEMNRILRPSGYFILSTKHD-------------SIEEEEALTTL 424 (689)
Q Consensus 359 ~~~dt~~LPFpD~SFDlVhcs~cli~W~-~d~~~aL~EI~RVLRPGG~fVIsdp~~-------------~le~~~~ie~L 424 (689)
...+...+|+++++||+|+|..++.++. .+...+|.++.|+|||||+|++.++.. .....+.+..+
T Consensus 145 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (254)
T 1xtp_A 145 ILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRL 224 (254)
T ss_dssp EESCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHH
T ss_pred EEccHHHCCCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHH
Confidence 5566778899999999999987665432 357899999999999999999987410 11123568889
Q ss_pred HHhcceeEEEee
Q 044932 425 TASICWNILAHK 436 (689)
Q Consensus 425 a~~l~W~~v~~~ 436 (689)
++..+|+.+...
T Consensus 225 l~~aGf~~~~~~ 236 (254)
T 1xtp_A 225 FNESGVRVVKEA 236 (254)
T ss_dssp HHHHTCCEEEEE
T ss_pred HHHCCCEEEEee
Confidence 999999887553
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-13 Score=127.34 Aligned_cols=139 Identities=14% Similarity=0.024 Sum_probs=100.2
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITW 385 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W 385 (689)
...+|||+|||+|.++..|+.. .|+++|+++ .+++.|.++.....+...+...+|+++++||+|+|....+++
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~-----~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~ 120 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDP-----ILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGF 120 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGG
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCH-----HHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhh
Confidence 3568999999999998888754 588888875 577777776434445556667788888999999987444444
Q ss_pred c--ccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccc-------cCceeEEEEEeC
Q 044932 386 H--AHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDE-------ISEMGVKIYQKP 451 (689)
Q Consensus 386 ~--~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~-------~g~~~i~IwqKp 451 (689)
. .+...+|.++.|+|+|||++++..+.........+..+++..+|+.+...... .....+.+++|+
T Consensus 121 ~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~v~~k~ 195 (195)
T 3cgg_A 121 LAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFESWDLKPFVQGSEFLVAVFTKK 195 (195)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESSTTCCBCCTTCSEEEEEEEEC
T ss_pred cChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecccccCcCCCCCcEEEEEEecC
Confidence 4 34578999999999999999998765432233457888889999887553320 123446666664
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.3e-14 Score=135.81 Aligned_cols=131 Identities=19% Similarity=0.222 Sum_probs=99.5
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcC--CCcEEecCCCCCCCC
Q 044932 293 LESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERG--FPAVVSPLGNRRLPF 368 (689)
Q Consensus 293 id~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRG--L~~i~~~~dt~~LPF 368 (689)
++.+...++ ...+|||+|||+|.++..|+.. .|+++|+++ .+++.|.++. ....+...+...+|+
T Consensus 44 ~~~l~~~~~------~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~~~d~~~~~~ 112 (242)
T 3l8d_A 44 IPFFEQYVK------KEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISE-----VMIQKGKERGEGPDLSFIKGDLSSLPF 112 (242)
T ss_dssp HHHHHHHSC------TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCH-----HHHHHHHTTTCBTTEEEEECBTTBCSS
T ss_pred HHHHHHHcC------CCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCH-----HHHHHHHhhcccCCceEEEcchhcCCC
Confidence 445555443 3468999999999999888865 588898875 5778887763 233455667788999
Q ss_pred CCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCch-------------------hHHHHHHHHHHhcc
Q 044932 369 PSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSI-------------------EEEEALTTLTASIC 429 (689)
Q Consensus 369 pD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~l-------------------e~~~~ie~La~~l~ 429 (689)
++++||+|+|..++. +..++..+|.++.|+|||||+|++.++.... .....+..+++..+
T Consensus 113 ~~~~fD~v~~~~~l~-~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 191 (242)
T 3l8d_A 113 ENEQFEAIMAINSLE-WTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQG 191 (242)
T ss_dssp CTTCEEEEEEESCTT-SSSCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTT
T ss_pred CCCCccEEEEcChHh-hccCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcC
Confidence 999999999986654 4678889999999999999999998742100 11246889999999
Q ss_pred eeEEEe
Q 044932 430 WNILAH 435 (689)
Q Consensus 430 W~~v~~ 435 (689)
|+.+..
T Consensus 192 f~~~~~ 197 (242)
T 3l8d_A 192 FKVVDG 197 (242)
T ss_dssp EEEEEE
T ss_pred CEEEEe
Confidence 998764
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=133.17 Aligned_cols=120 Identities=14% Similarity=0.051 Sum_probs=91.9
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCC-CcEEecCCCCCCCCCCCCcceEEeccccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGF-PAVVSPLGNRRLPFPSGVFDAIHCDGCSITW 385 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL-~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W 385 (689)
..+|||||||+|.++..|+.. .|+++|+++ .+++.|.++.. ...+...+...+ +++++||+|+|..++ ++
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~-----~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l-~~ 115 (250)
T 2p7i_A 43 PGNLLELGSFKGDFTSRLQEHFNDITCVEASE-----EAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVL-EH 115 (250)
T ss_dssp SSCEEEESCTTSHHHHHHTTTCSCEEEEESCH-----HHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCG-GG
T ss_pred CCcEEEECCCCCHHHHHHHHhCCcEEEEeCCH-----HHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHH-Hh
Confidence 457999999999999988865 589999875 57888877643 334445565666 578999999998655 44
Q ss_pred cccHHHHHHHHH-hccCCCcEEEEEcCCCch------------------------------hHHHHHHHHHHhcceeEEE
Q 044932 386 HAHGGKLLLEMN-RILRPSGYFILSTKHDSI------------------------------EEEEALTTLTASICWNILA 434 (689)
Q Consensus 386 ~~d~~~aL~EI~-RVLRPGG~fVIsdp~~~l------------------------------e~~~~ie~La~~l~W~~v~ 434 (689)
..++..+|.++. |+|||||++++.++.... .....+..+++..+|+.+.
T Consensus 116 ~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 195 (250)
T 2p7i_A 116 IDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTY 195 (250)
T ss_dssp CSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEE
T ss_pred hcCHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEE
Confidence 678899999999 999999999999854210 1234688888999998875
Q ss_pred e
Q 044932 435 H 435 (689)
Q Consensus 435 ~ 435 (689)
.
T Consensus 196 ~ 196 (250)
T 2p7i_A 196 R 196 (250)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.52 E-value=6.7e-14 Score=138.17 Aligned_cols=97 Identities=16% Similarity=0.299 Sum_probs=77.5
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH----cCCC-cEEecCCCCCCCCCCCCcceEEecc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE----RGFP-AVVSPLGNRRLPFPSGVFDAIHCDG 380 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e----RGL~-~i~~~~dt~~LPFpD~SFDlVhcs~ 380 (689)
...+|||||||+|.++..|+.. .|+++|+++ .|++.|.+ .+++ ..+...+...+||++++||+|+|..
T Consensus 37 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~-----~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~ 111 (260)
T 1vl5_A 37 GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTE-----DILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRI 111 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCH-----HHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCH-----HHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhh
Confidence 4579999999999999888765 589999886 45555544 3554 3455677788999999999999986
Q ss_pred ccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 381 CSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 381 cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
++ +|..++..+|.++.|+|||||+|++.+
T Consensus 112 ~l-~~~~d~~~~l~~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 112 AA-HHFPNPASFVSEAYRVLKKGGQLLLVD 140 (260)
T ss_dssp CG-GGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hh-HhcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 55 556788999999999999999999975
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-13 Score=135.42 Aligned_cols=119 Identities=19% Similarity=0.254 Sum_probs=88.8
Q ss_pred cccchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhc---CCeEEEEcCCcccHHHHHHHHHH----cCCC
Q 044932 283 SEFKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA---KEVLTLTVGLKDDLVDLAQVALE----RGFP 355 (689)
Q Consensus 283 t~F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~---~~V~gmDIsp~D~seamlq~A~e----RGL~ 355 (689)
..+........+.+.+.++ +. ...+|||||||+|.++..|+. ..|+++|+++. +++.|.+ .|+.
T Consensus 40 ~~~~~~~~~~~~~l~~~~~-~~---~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~-----~~~~a~~~~~~~~~~ 110 (273)
T 3bus_A 40 VSVDDATDRLTDEMIALLD-VR---SGDRVLDVGCGIGKPAVRLATARDVRVTGISISRP-----QVNQANARATAAGLA 110 (273)
T ss_dssp CCHHHHHHHHHHHHHHHSC-CC---TTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHH-----HHHHHHHHHHHTTCT
T ss_pred cCHHHHHHHHHHHHHHhcC-CC---CCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHH-----HHHHHHHHHHhcCCC
Confidence 3444555566666666654 22 457999999999999888764 36899998763 4555444 3554
Q ss_pred --cEEecCCCCCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 356 --AVVSPLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 356 --~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
..+...+...+||++++||+|+|..++ +|..++..+|.++.|+|||||++++.+.
T Consensus 111 ~~~~~~~~d~~~~~~~~~~fD~v~~~~~l-~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 167 (273)
T 3bus_A 111 NRVTFSYADAMDLPFEDASFDAVWALESL-HHMPDRGRALREMARVLRPGGTVAIADF 167 (273)
T ss_dssp TTEEEEECCTTSCCSCTTCEEEEEEESCT-TTSSCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cceEEEECccccCCCCCCCccEEEEechh-hhCCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 445566778899999999999987655 4467889999999999999999999863
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-13 Score=131.95 Aligned_cols=114 Identities=13% Similarity=0.190 Sum_probs=83.7
Q ss_pred cchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCC
Q 044932 285 FKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLG 362 (689)
Q Consensus 285 F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~d 362 (689)
|...+..+.+.|...++ ...+|||+|||+|.++..|+.. .|+++|+++ .|++.|.++.....+...+
T Consensus 23 ~~~~~~~~~~~l~~~~~------~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~-----~~~~~a~~~~~~~~~~~~d 91 (239)
T 3bxo_A 23 YAAEASDIADLVRSRTP------EASSLLDVACGTGTHLEHFTKEFGDTAGLELSE-----DMLTHARKRLPDATLHQGD 91 (239)
T ss_dssp HHHHHHHHHHHHHHHCT------TCCEEEEETCTTSHHHHHHHHHHSEEEEEESCH-----HHHHHHHHHCTTCEEEECC
T ss_pred HHHHHHHHHHHHHHhcC------CCCeEEEecccCCHHHHHHHHhCCcEEEEeCCH-----HHHHHHHHhCCCCEEEECC
Confidence 33444444555554432 3578999999999998888754 589999875 5778887764334455667
Q ss_pred CCCCCCCCCCcceEEecccccccc---ccHHHHHHHHHhccCCCcEEEEEc
Q 044932 363 NRRLPFPSGVFDAIHCDGCSITWH---AHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 363 t~~LPFpD~SFDlVhcs~cli~W~---~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
...+|+ +++||+|+|+...+++. .+...+|.++.|+|||||+|++.+
T Consensus 92 ~~~~~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 92 MRDFRL-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp TTTCCC-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred HHHccc-CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 777887 68999999876555555 355789999999999999999975
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.1e-14 Score=138.85 Aligned_cols=120 Identities=11% Similarity=-0.009 Sum_probs=84.3
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc-C----------------CCcEEecCCCCCCCCC
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER-G----------------FPAVVSPLGNRRLPFP 369 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR-G----------------L~~i~~~~dt~~LPFp 369 (689)
..+|||+|||+|.++.+|+.. .|+|+|+|+ .|++.|.++ + ....+...|...+|++
T Consensus 23 ~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~-----~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 23 GARVLVPLCGKSQDMSWLSGQGYHVVGAELSE-----AAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp TCEEEETTTCCSHHHHHHHHHCCEEEEEEECH-----HHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred CCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCH-----HHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 468999999999999888754 599999886 577777665 1 2334556677889987
Q ss_pred C-CCcceEEecccccccc-ccHHHHHHHHHhccCCCcEEEEEc--CC-------CchhHHHHHHHHHHhcceeEEE
Q 044932 370 S-GVFDAIHCDGCSITWH-AHGGKLLLEMNRILRPSGYFILST--KH-------DSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 370 D-~SFDlVhcs~cli~W~-~d~~~aL~EI~RVLRPGG~fVIsd--p~-------~~le~~~~ie~La~~l~W~~v~ 434 (689)
+ ++||+|++..++.+.. .+...++.|+.|+|||||++++.. .. .+....+++..++.. +|+...
T Consensus 98 ~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~ 172 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTK 172 (203)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEE
T ss_pred cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEE
Confidence 6 8999999865554322 234578999999999999844332 11 111123457777777 887653
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=9.4e-14 Score=136.04 Aligned_cols=132 Identities=11% Similarity=0.103 Sum_probs=94.7
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHH----HcCCC--cEEecCCC
Q 044932 293 LESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVAL----ERGFP--AVVSPLGN 363 (689)
Q Consensus 293 id~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~----eRGL~--~i~~~~dt 363 (689)
...+...++.+. ...+|||+|||+|.++..|+.. .|+++|+++. +++.|. ..|+. ..+...+.
T Consensus 34 ~~~~l~~l~~~~---~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~~~~~~~d~ 105 (257)
T 3f4k_A 34 TRKAVSFINELT---DDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPD-----FIEIFNENAVKANCADRVKGITGSM 105 (257)
T ss_dssp HHHHHTTSCCCC---TTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHH-----HHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred HHHHHHHHhcCC---CCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHH-----HHHHHHHHHHHcCCCCceEEEECCh
Confidence 334444444332 3469999999999998888753 6999999874 444444 34655 44556777
Q ss_pred CCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC-----Cc-------------hhHHHHHHHHH
Q 044932 364 RRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH-----DS-------------IEEEEALTTLT 425 (689)
Q Consensus 364 ~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~-----~~-------------le~~~~ie~La 425 (689)
..+||++++||+|+|..++.+ . ++..+|.++.|+|||||++++.++. .. ......+..++
T Consensus 106 ~~~~~~~~~fD~v~~~~~l~~-~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 183 (257)
T 3f4k_A 106 DNLPFQNEELDLIWSEGAIYN-I-GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKM 183 (257)
T ss_dssp TSCSSCTTCEEEEEEESCSCC-C-CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHH
T ss_pred hhCCCCCCCEEEEEecChHhh-c-CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 889999999999999876544 3 7889999999999999999998742 00 00124577788
Q ss_pred HhcceeEEE
Q 044932 426 ASICWNILA 434 (689)
Q Consensus 426 ~~l~W~~v~ 434 (689)
+..+|+.+.
T Consensus 184 ~~aGf~~v~ 192 (257)
T 3f4k_A 184 ERAGYTPTA 192 (257)
T ss_dssp HHTTEEEEE
T ss_pred HHCCCeEEE
Confidence 888887654
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.7e-13 Score=130.72 Aligned_cols=97 Identities=15% Similarity=0.236 Sum_probs=75.2
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc----CCCcEEecCCCCCCCCCCCCcceEEecc-
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER----GFPAVVSPLGNRRLPFPSGVFDAIHCDG- 380 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR----GL~~i~~~~dt~~LPFpD~SFDlVhcs~- 380 (689)
...+|||+|||+|.++..|+.. .|+++|+++ .|++.|.++ ++...+...+...+|++ ++||+|+|..
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~-----~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~ 110 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQ-----EMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLD 110 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCH-----HHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTT
T ss_pred CCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCH-----HHHHHHHHHHhhcCCCeEEEecccccCCcc-CCceEEEEcCc
Confidence 3578999999999999888765 488888876 455555443 44455666677788888 8999999986
Q ss_pred cccccc---ccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 381 CSITWH---AHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 381 cli~W~---~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
++ ++. .+...+|.++.|+|+|||+|++..+
T Consensus 111 ~l-~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 111 ST-NYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp GG-GGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cc-cccCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 44 444 4678999999999999999999643
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=138.69 Aligned_cols=144 Identities=17% Similarity=0.172 Sum_probs=101.5
Q ss_pred cccchhHHHHHHHHHhhcc---cccCCCCCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHH----c
Q 044932 283 SEFKGGVLHYLESIEEMVP---DIEWGKNIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALE----R 352 (689)
Q Consensus 283 t~F~~ga~~Yid~L~~~Lp---~l~~G~~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~e----R 352 (689)
..+........+.+...++ .+. ...+|||||||+|.++..|+.. .|+++|+++ .|++.|.+ .
T Consensus 57 ~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~-----~~~~~a~~~~~~~ 128 (297)
T 2o57_A 57 DEIREASLRTDEWLASELAMTGVLQ---RQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAP-----VQNKRNEEYNNQA 128 (297)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCCC---TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCH-----HHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhccCCC---CCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCH-----HHHHHHHHHHHhc
Confidence 3444455555666666651 222 4579999999999998887753 689999886 35555544 3
Q ss_pred CCC--cEEecCCCCCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCC-------ch--------
Q 044932 353 GFP--AVVSPLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHD-------SI-------- 415 (689)
Q Consensus 353 GL~--~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~-------~l-------- 415 (689)
|+. ..+...+...+||++++||+|+|..++.| ..++..+|.++.|+|||||+|++.++.. ..
T Consensus 129 ~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 207 (297)
T 2o57_A 129 GLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLH-SPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIK 207 (297)
T ss_dssp TCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGG-CSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHT
T ss_pred CCCcceEEEEcCcccCCCCCCCEeEEEecchhhh-cCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhc
Confidence 543 44556677889999999999999876654 5678999999999999999999986421 00
Q ss_pred ----hHHHHHHHHHHhcceeEEEe
Q 044932 416 ----EEEEALTTLTASICWNILAH 435 (689)
Q Consensus 416 ----e~~~~ie~La~~l~W~~v~~ 435 (689)
.....+..+++..+|+.+..
T Consensus 208 ~~~~~~~~~~~~~l~~aGf~~~~~ 231 (297)
T 2o57_A 208 LHDMGSLGLYRSLAKECGLVTLRT 231 (297)
T ss_dssp CSSCCCHHHHHHHHHHTTEEEEEE
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEE
Confidence 01245667788888876643
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-13 Score=134.77 Aligned_cols=98 Identities=14% Similarity=0.141 Sum_probs=80.0
Q ss_pred CCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcC--CCcEEecCCCCCCCCCCCCcceEEecccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERG--FPAVVSPLGNRRLPFPSGVFDAIHCDGCS 382 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRG--L~~i~~~~dt~~LPFpD~SFDlVhcs~cl 382 (689)
...+|||+|||+|.++..|+.. .|+++|+++ .+++.|.++. ....+...+...+|+++++||+|+|..++
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 118 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSE-----RMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLAL 118 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCH-----HHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCG
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCH-----HHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhh
Confidence 4579999999999999888764 588999875 5777777763 23445566778899999999999998654
Q ss_pred ccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 383 ITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 383 i~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
++..++..+|.++.|+|||||+|+++.+
T Consensus 119 -~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 119 -HYIASFDDICKKVYINLKSSGSFIFSVE 146 (253)
T ss_dssp -GGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -hhhhhHHHHHHHHHHHcCCCcEEEEEeC
Confidence 4567899999999999999999999854
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.49 E-value=9.9e-14 Score=135.67 Aligned_cols=133 Identities=14% Similarity=0.158 Sum_probs=96.1
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCC-
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRL- 366 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~L- 366 (689)
....+.+..+++.+. ...+|||||||+|.++..|+.. .|+++|+++ .+++.|.++ ..+...+...+
T Consensus 26 ~~~~~~~~~~l~~~~---~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~-----~~~~~a~~~---~~~~~~d~~~~~ 94 (240)
T 3dli_A 26 ELVKARLRRYIPYFK---GCRRVLDIGCGRGEFLELCKEEGIESIGVDINE-----DMIKFCEGK---FNVVKSDAIEYL 94 (240)
T ss_dssp HHHHHHHGGGGGGTT---TCSCEEEETCTTTHHHHHHHHHTCCEEEECSCH-----HHHHHHHTT---SEEECSCHHHHH
T ss_pred HHHHHHHHHHHhhhc---CCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCH-----HHHHHHHhh---cceeeccHHHHh
Confidence 344455555555443 3578999999999999888754 588998875 578888776 33444454443
Q ss_pred -CCCCCCcceEEeccccccccc--cHHHHHHHHHhccCCCcEEEEEcCCCch----------------hHHHHHHHHHHh
Q 044932 367 -PFPSGVFDAIHCDGCSITWHA--HGGKLLLEMNRILRPSGYFILSTKHDSI----------------EEEEALTTLTAS 427 (689)
Q Consensus 367 -PFpD~SFDlVhcs~cli~W~~--d~~~aL~EI~RVLRPGG~fVIsdp~~~l----------------e~~~~ie~La~~ 427 (689)
||++++||+|+|..++.+ .. +...+|.++.|+|||||+|++..+.... .....+..+++.
T Consensus 95 ~~~~~~~fD~i~~~~~l~~-~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 173 (240)
T 3dli_A 95 KSLPDKYLDGVMISHFVEH-LDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEY 173 (240)
T ss_dssp HTSCTTCBSEEEEESCGGG-SCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHH
T ss_pred hhcCCCCeeEEEECCchhh-CCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHH
Confidence 899999999999765544 55 4489999999999999999998754211 122568888888
Q ss_pred cceeEEE
Q 044932 428 ICWNILA 434 (689)
Q Consensus 428 l~W~~v~ 434 (689)
.+|+.+.
T Consensus 174 aGf~~~~ 180 (240)
T 3dli_A 174 LGFRDVK 180 (240)
T ss_dssp HTCEEEE
T ss_pred CCCeEEE
Confidence 8888654
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-13 Score=132.44 Aligned_cols=127 Identities=17% Similarity=0.190 Sum_probs=97.9
Q ss_pred CCCeEEEECCccchhHHHhhcCCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWHA 387 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~~ 387 (689)
...+|||+|||+|.++..|. ..|+++|+++. .+. +...+...+|+++++||+|+|..++ |+ .
T Consensus 67 ~~~~vLDiG~G~G~~~~~l~-~~v~~~D~s~~-------------~~~--~~~~d~~~~~~~~~~fD~v~~~~~l-~~-~ 128 (215)
T 2zfu_A 67 ASLVVADFGCGDCRLASSIR-NPVHCFDLASL-------------DPR--VTVCDMAQVPLEDESVDVAVFCLSL-MG-T 128 (215)
T ss_dssp TTSCEEEETCTTCHHHHHCC-SCEEEEESSCS-------------STT--EEESCTTSCSCCTTCEEEEEEESCC-CS-S
T ss_pred CCCeEEEECCcCCHHHHHhh-ccEEEEeCCCC-------------Cce--EEEeccccCCCCCCCEeEEEEehhc-cc-c
Confidence 34689999999999988774 67999999884 233 3344667789999999999997665 53 7
Q ss_pred cHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccccCceeEEEEEeCCC
Q 044932 388 HGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEISEMGVKIYQKPES 453 (689)
Q Consensus 388 d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqKp~~ 453 (689)
++..+|.++.|+|+|||++++.+..........+..+++..+|+.+.... ..+...+.+++|...
T Consensus 129 ~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~-~~~~~~~~~~~k~~~ 193 (215)
T 2zfu_A 129 NIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDL-TNSHFFLFDFQKTGP 193 (215)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEEC-CSTTCEEEEEEECSS
T ss_pred CHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEec-CCCeEEEEEEEecCc
Confidence 88999999999999999999987654332345688899999999876432 234456888888754
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-13 Score=131.21 Aligned_cols=139 Identities=15% Similarity=0.102 Sum_probs=101.8
Q ss_pred CCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHH----cCCC-cEEecCCCCCCCCCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALE----RGFP-AVVSPLGNRRLPFPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~e----RGL~-~i~~~~dt~~LPFpD~SFDlVh 377 (689)
...+|||+|||+|.++..|+. ..|+++|+++. +++.|.+ .++. ..+...+...+|+++++||+|+
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 111 (219)
T 3dh0_A 37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEE-----MVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIF 111 (219)
T ss_dssp TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHH-----HHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEE
T ss_pred CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHH-----HHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEE
Confidence 356899999999998877764 35899998864 4444443 3554 4455667788899999999999
Q ss_pred eccccccccccHHHHHHHHHhccCCCcEEEEEcCCC----------chhHHHHHHHHHHhcceeEEEeeccccCceeEEE
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHD----------SIEEEEALTTLTASICWNILAHKTDEISEMGVKI 447 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~----------~le~~~~ie~La~~l~W~~v~~~~~~~g~~~i~I 447 (689)
|..++. +..++..+|.++.|+|||||++++.+... .....+.+..+++..+|+.+..... .+..+..+
T Consensus 112 ~~~~l~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~-~~~~~~~~ 189 (219)
T 3dh0_A 112 MAFTFH-ELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEV-GKYCFGVY 189 (219)
T ss_dssp EESCGG-GCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEE-TTTEEEEE
T ss_pred eehhhh-hcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEee-CCceEEEE
Confidence 986654 45688999999999999999999986321 1112356889999999998765332 34556788
Q ss_pred EEeCCC
Q 044932 448 YQKPES 453 (689)
Q Consensus 448 wqKp~~ 453 (689)
++|+..
T Consensus 190 ~~k~~~ 195 (219)
T 3dh0_A 190 AMIVKQ 195 (219)
T ss_dssp EECC--
T ss_pred EEeccc
Confidence 888753
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.49 E-value=7.7e-14 Score=136.58 Aligned_cols=110 Identities=11% Similarity=0.111 Sum_probs=81.7
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhc---CCeEEEEcCCcccHHHHHHHHH----HcCCC--cEEecC
Q 044932 291 HYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA---KEVLTLTVGLKDDLVDLAQVAL----ERGFP--AVVSPL 361 (689)
Q Consensus 291 ~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~---~~V~gmDIsp~D~seamlq~A~----eRGL~--~i~~~~ 361 (689)
.++..+...++ +. ...+|||||||+|.++..|+. ..|+++|+++. |++.|. ..|+. ..+...
T Consensus 23 ~~~~~l~~~~~-~~---~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~-----~l~~a~~~~~~~~~~~~v~~~~~ 93 (256)
T 1nkv_A 23 EKYATLGRVLR-MK---PGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSL-----FTAQAKRRAEELGVSERVHFIHN 93 (256)
T ss_dssp HHHHHHHHHTC-CC---TTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHH-----HHHHHHHHHHHTTCTTTEEEEES
T ss_pred HHHHHHHHhcC-CC---CCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHH-----HHHHHHHHHHhcCCCcceEEEEC
Confidence 34455555543 22 357899999999998887764 36899998874 444443 34654 445667
Q ss_pred CCCCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 362 GNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 362 dt~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
+...+|+ +++||+|+|..++ ++..++..+|.++.|+|||||+|++.++
T Consensus 94 d~~~~~~-~~~fD~V~~~~~~-~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 94 DAAGYVA-NEKCDVAACVGAT-WIAGGFAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp CCTTCCC-SSCEEEEEEESCG-GGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred ChHhCCc-CCCCCEEEECCCh-HhcCCHHHHHHHHHHHcCCCeEEEEecC
Confidence 7788888 7999999997655 4455788999999999999999999864
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-13 Score=125.77 Aligned_cols=134 Identities=12% Similarity=0.079 Sum_probs=98.5
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITW 385 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W 385 (689)
...+|||+|||+|.++..|+.. .|+++|+++ .+++.|.++.-...+...+ +|+++++||+|+|..++. +
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~-----~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~l~-~ 87 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEFATKLYCIDINV-----IALKEVKEKFDSVITLSDP---KEIPDNSVDFILFANSFH-D 87 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHHTTEEEEEEECSCH-----HHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEESCST-T
T ss_pred CCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCH-----HHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEccchh-c
Confidence 3568999999999999988876 588888765 5777777773333444444 889999999999986654 4
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEcCCCc----------hhHHHHHHHHHHhcceeEEEeeccccCceeEEEEEeCCC
Q 044932 386 HAHGGKLLLEMNRILRPSGYFILSTKHDS----------IEEEEALTTLTASICWNILAHKTDEISEMGVKIYQKPES 453 (689)
Q Consensus 386 ~~d~~~aL~EI~RVLRPGG~fVIsdp~~~----------le~~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqKp~~ 453 (689)
..++..+|.++.|+|||||++++.+.... ....+.+..+++ +|+.+..... ....+.++++|+.+
T Consensus 88 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~-~~~~~~l~~~~~~~ 162 (170)
T 3i9f_A 88 MDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNP-TPYHFGLVLKRKTS 162 (170)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECS-STTEEEEEEEECCC
T ss_pred ccCHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCC-CCceEEEEEecCCC
Confidence 56889999999999999999999864211 112356778887 9998765432 33556777777543
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.9e-13 Score=134.43 Aligned_cols=120 Identities=17% Similarity=0.154 Sum_probs=90.8
Q ss_pred CCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHH----cCCC--cEEecCCCCCCCCCCCCcceEEe
Q 044932 308 NIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALE----RGFP--AVVSPLGNRRLPFPSGVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~e----RGL~--~i~~~~dt~~LPFpD~SFDlVhc 378 (689)
...+|||||||+|.++..|+.. .|+++|+++. +++.|.+ .|+. ..+...+...+|+++++||+|+|
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~-----~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~ 120 (267)
T 3kkz_A 46 EKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSG-----FIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWS 120 (267)
T ss_dssp TTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHH-----HHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHH-----HHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEE
Confidence 4579999999999999888865 5899998864 4554444 4554 44556777889999999999999
Q ss_pred ccccccccccHHHHHHHHHhccCCCcEEEEEcCC-----Cc-------------hhHHHHHHHHHHhcceeEEE
Q 044932 379 DGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH-----DS-------------IEEEEALTTLTASICWNILA 434 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~-----~~-------------le~~~~ie~La~~l~W~~v~ 434 (689)
..++.+ . ++..+|.++.|+|||||++++.++. .. +.....+..+++..+|+.+.
T Consensus 121 ~~~~~~-~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 192 (267)
T 3kkz_A 121 EGAIYN-I-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVA 192 (267)
T ss_dssp SSCGGG-T-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEE
T ss_pred cCCcee-c-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEE
Confidence 876644 3 7889999999999999999998642 00 00124577788888887764
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-13 Score=134.26 Aligned_cols=122 Identities=16% Similarity=0.188 Sum_probs=92.8
Q ss_pred CCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcC---CCcEEecCCCCCCCCCCCCcceEEeccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERG---FPAVVSPLGNRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRG---L~~i~~~~dt~~LPFpD~SFDlVhcs~c 381 (689)
...+|||+|||+|.++..|+.. .|+++|+++ .+++.|.++. ....+...+...+|+++++||+|+|..+
T Consensus 55 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 129 (266)
T 3ujc_A 55 ENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICS-----NIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDA 129 (266)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCH-----HHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEESC
T ss_pred CCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCH-----HHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHHHH
Confidence 4579999999999998887753 589999875 6788888774 2344556677888999999999999765
Q ss_pred ccccc--ccHHHHHHHHHhccCCCcEEEEEcCCC-----c--------------hhHHHHHHHHHHhcceeEEEe
Q 044932 382 SITWH--AHGGKLLLEMNRILRPSGYFILSTKHD-----S--------------IEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 382 li~W~--~d~~~aL~EI~RVLRPGG~fVIsdp~~-----~--------------le~~~~ie~La~~l~W~~v~~ 435 (689)
+.+ . .++..+|.++.|+|||||++++.++.. . ......+..+++..+|+.+..
T Consensus 130 l~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 203 (266)
T 3ujc_A 130 ILA-LSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVS 203 (266)
T ss_dssp GGG-SCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred HHh-cChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEE
Confidence 544 5 678899999999999999999987421 0 011245777888888877643
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=5.9e-14 Score=148.94 Aligned_cols=152 Identities=11% Similarity=0.095 Sum_probs=111.6
Q ss_pred eecCCCCcccchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcC
Q 044932 276 LTFPQNQSEFKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERG 353 (689)
Q Consensus 276 ~~Fpgggt~F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRG 353 (689)
..|.+....|...+..+.+.+.+.++ +. ...+|||||||+|.++..|+.. .|+++|+++ .|++.|.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~~---~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~-----~~~~~a~~~~ 149 (416)
T 4e2x_A 79 PYHSSGSSVMREHFAMLARDFLATEL-TG---PDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSS-----GVAAKAREKG 149 (416)
T ss_dssp CCCGGGCHHHHHHHHHHHHHHHHTTT-CS---SSCEEEEETCTTTTTHHHHHHTTCEEEEECCCH-----HHHHHHHTTT
T ss_pred cCcCcCCHHHHHHHHHHHHHHHHHhC-CC---CCCEEEEecCCCCHHHHHHHHcCCcEEEECCCH-----HHHHHHHHcC
Confidence 33444445566667777777766554 22 3579999999999999988876 478888764 6888998887
Q ss_pred CCcEEec---CCCCCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCC-----------------
Q 044932 354 FPAVVSP---LGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHD----------------- 413 (689)
Q Consensus 354 L~~i~~~---~dt~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~----------------- 413 (689)
+...... .+...+||++++||+|+|..++ ++..++..+|.++.|+|||||+|++..+..
T Consensus 150 ~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl-~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 228 (416)
T 4e2x_A 150 IRVRTDFFEKATADDVRRTEGPANVIYAANTL-CHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHF 228 (416)
T ss_dssp CCEECSCCSHHHHHHHHHHHCCEEEEEEESCG-GGCTTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCC
T ss_pred CCcceeeechhhHhhcccCCCCEEEEEECChH-HhcCCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhh
Confidence 7654322 2235677888999999998655 446789999999999999999999987530
Q ss_pred chhHHHHHHHHHHhcceeEEEeec
Q 044932 414 SIEEEEALTTLTASICWNILAHKT 437 (689)
Q Consensus 414 ~le~~~~ie~La~~l~W~~v~~~~ 437 (689)
.......+..+++..+|+.+....
T Consensus 229 ~~~s~~~l~~ll~~aGf~~~~~~~ 252 (416)
T 4e2x_A 229 FLFSATSVQGMAQRCGFELVDVQR 252 (416)
T ss_dssp EECCHHHHHHHHHHTTEEEEEEEE
T ss_pred hcCCHHHHHHHHHHcCCEEEEEEE
Confidence 011235689999999999876544
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-13 Score=128.95 Aligned_cols=135 Identities=17% Similarity=0.210 Sum_probs=95.8
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCC---CCCCC-CcceEEecccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRL---PFPSG-VFDAIHCDGCS 382 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~L---PFpD~-SFDlVhcs~cl 382 (689)
..+|||+|||+|.++..|+.. .|+++|+++ .+++.|.+++. ..+...+...+ |++.+ +||+|+|..++
T Consensus 53 ~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~-----~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l 126 (227)
T 3e8s_A 53 PERVLDLGCGEGWLLRALADRGIEAVGVDGDR-----TLVDAARAAGA-GEVHLASYAQLAEAKVPVGKDYDLICANFAL 126 (227)
T ss_dssp CSEEEEETCTTCHHHHHHHTTTCEEEEEESCH-----HHHHHHHHTCS-SCEEECCHHHHHTTCSCCCCCEEEEEEESCC
T ss_pred CCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCH-----HHHHHHHHhcc-cccchhhHHhhcccccccCCCccEEEECchh
Confidence 478999999999999888865 488888875 68888888732 22333333333 55444 59999998665
Q ss_pred ccccccHHHHHHHHHhccCCCcEEEEEcCCCc-----------------------------hhHHHHHHHHHHhcceeEE
Q 044932 383 ITWHAHGGKLLLEMNRILRPSGYFILSTKHDS-----------------------------IEEEEALTTLTASICWNIL 433 (689)
Q Consensus 383 i~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~-----------------------------le~~~~ie~La~~l~W~~v 433 (689)
. +.++..+|.++.|+|||||+|++.++... ....+.+..+++..+|+.+
T Consensus 127 ~--~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 204 (227)
T 3e8s_A 127 L--HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLV 204 (227)
T ss_dssp C--SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEE
T ss_pred h--hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEE
Confidence 4 67888999999999999999999875310 0134668899999999987
Q ss_pred Eeecccc-----CceeEEEEEeC
Q 044932 434 AHKTDEI-----SEMGVKIYQKP 451 (689)
Q Consensus 434 ~~~~~~~-----g~~~i~IwqKp 451 (689)
....... ....+++.+||
T Consensus 205 ~~~~~~~~~~~~~~~~~~va~k~ 227 (227)
T 3e8s_A 205 SLQEPQHPQSAVPQSLLMVAERH 227 (227)
T ss_dssp EEECCCCTTCSSCSCEEEEEEEC
T ss_pred EEecCCCCCCCCceeEEEEeecC
Confidence 6543211 12346666664
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.3e-13 Score=129.22 Aligned_cols=142 Identities=14% Similarity=0.095 Sum_probs=96.2
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCC---CcEEecCCCCCCCCCCCCcceEEecc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGF---PAVVSPLGNRRLPFPSGVFDAIHCDG 380 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL---~~i~~~~dt~~LPFpD~SFDlVhcs~ 380 (689)
...+|||+|||+|.++..|+.. .|+++|+++ .+++.|.++-. ...+...+...+|++ ++||+|+|..
T Consensus 44 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~ 117 (234)
T 3dtn_A 44 ENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSE-----KMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYDMVVSAL 117 (234)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCH-----HHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCEEEEEEES
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCH-----HHHHHHHHhhccCCCEEEEeCchhccCCC-CCceEEEEeC
Confidence 4579999999999998887753 589999875 57777776521 344556677888888 9999999986
Q ss_pred ccccccccHH--HHHHHHHhccCCCcEEEEEcCCC--ch------------------------------------hHHHH
Q 044932 381 CSITWHAHGG--KLLLEMNRILRPSGYFILSTKHD--SI------------------------------------EEEEA 420 (689)
Q Consensus 381 cli~W~~d~~--~aL~EI~RVLRPGG~fVIsdp~~--~l------------------------------------e~~~~ 420 (689)
++.+ ..++. .+|.++.|+|||||+|++.+... .. .....
T Consensus 118 ~l~~-~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (234)
T 3dtn_A 118 SIHH-LEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQ 196 (234)
T ss_dssp CGGG-SCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHH
T ss_pred cccc-CCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHH
Confidence 5544 44444 59999999999999999987321 00 01135
Q ss_pred HHHHHHhcceeEEEeeccccCceeEEEEEeCCCchhH
Q 044932 421 LTTLTASICWNILAHKTDEISEMGVKIYQKPESNDIY 457 (689)
Q Consensus 421 ie~La~~l~W~~v~~~~~~~g~~~i~IwqKp~~~~cy 457 (689)
+..+++..||+.+....... ..++..-.|+..+..|
T Consensus 197 ~~~ll~~aGF~~v~~~~~~~-~~~~~~~~~~~~~~~~ 232 (234)
T 3dtn_A 197 QLNWLKEAGFRDVSCIYKYY-QFAVMFGRKTEGHHHH 232 (234)
T ss_dssp HHHHHHHTTCEEEEEEEEET-TEEEEEEECC------
T ss_pred HHHHHHHcCCCceeeeeeec-ceeEEEEEeccccccc
Confidence 66789999999875543322 2335555555544433
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=136.09 Aligned_cols=99 Identities=27% Similarity=0.439 Sum_probs=82.5
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecccccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWH 386 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~ 386 (689)
..+|||+|||+|.++..|+.. .|+++|+++ .|++.|.++.... +...+...+|+++++||+|+|...+.++.
T Consensus 55 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~-----~~l~~a~~~~~~~-~~~~d~~~~~~~~~~fD~v~~~~~~~~~~ 128 (260)
T 2avn_A 55 PCRVLDLGGGTGKWSLFLQERGFEVVLVDPSK-----EMLEVAREKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSYV 128 (260)
T ss_dssp CCEEEEETCTTCHHHHHHHTTTCEEEEEESCH-----HHHHHHHHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHHC
T ss_pred CCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCH-----HHHHHHHhhcCCC-EEECcHHHCCCCCCCEEEEEEcchhhhcc
Confidence 468999999999999988865 488898875 5788888775432 55567788999999999999987777776
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 387 AHGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 387 ~d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
.++..+|.++.|+|||||+|++..+..
T Consensus 129 ~~~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 129 ENKDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred ccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 789999999999999999999988753
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.6e-13 Score=129.43 Aligned_cols=99 Identities=21% Similarity=0.292 Sum_probs=80.8
Q ss_pred CCCeEEEECCccchhHHHhhcC-CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecccccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWH 386 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~ 386 (689)
...+|||+|||+|.++..| .. .|+++|+++ .+++.|.++.....+...+...+|+++++||+|+|..++ ++.
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l-~~~ 108 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-PYPQKVGVEPSE-----AMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTL-EFV 108 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-CCSEEEEECCCH-----HHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCT-TTC
T ss_pred CCCeEEEECCCCCHhHHhC-CCCeEEEEeCCH-----HHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChh-hhc
Confidence 3568999999999999888 66 789999875 577788776433445566777899999999999988654 446
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 387 AHGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 387 ~d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
.++..+|.++.|+|||||++++.++..
T Consensus 109 ~~~~~~l~~~~~~L~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 109 EDVERVLLEARRVLRPGGALVVGVLEA 135 (211)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 788999999999999999999998764
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.6e-13 Score=135.25 Aligned_cols=137 Identities=15% Similarity=0.152 Sum_probs=100.3
Q ss_pred CCCeEEEECCccchhHHHhh--c---CCeEEEEcCCcccHHHHHHHHHHc----CCC--cEEecCCCCCCCCCCCCcceE
Q 044932 308 NIRVVLEIGSADLSFVASLL--A---KEVLTLTVGLKDDLVDLAQVALER----GFP--AVVSPLGNRRLPFPSGVFDAI 376 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La--~---~~V~gmDIsp~D~seamlq~A~eR----GL~--~i~~~~dt~~LPFpD~SFDlV 376 (689)
...+|||||||+|.++..|+ . ..|+++|+++ .+++.|.++ |+. ..+...+...+|++ ++||+|
T Consensus 118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~-----~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v 191 (305)
T 3ocj_A 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDP-----EALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLL 191 (305)
T ss_dssp TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCH-----HHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCH-----HHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEE
Confidence 35789999999999998884 2 2589999876 466666654 443 34556777888998 999999
Q ss_pred EeccccccccccHHH---HHHHHHhccCCCcEEEEEcCCC-------c-----------------------------hhH
Q 044932 377 HCDGCSITWHAHGGK---LLLEMNRILRPSGYFILSTKHD-------S-----------------------------IEE 417 (689)
Q Consensus 377 hcs~cli~W~~d~~~---aL~EI~RVLRPGG~fVIsdp~~-------~-----------------------------le~ 417 (689)
+|..++.+ ..++.. +|.++.|+|||||+|++.+... . +..
T Consensus 192 ~~~~~~~~-~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (305)
T 3ocj_A 192 TSNGLNIY-EPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRT 270 (305)
T ss_dssp ECCSSGGG-CCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCC
T ss_pred EECChhhh-cCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCC
Confidence 98765544 445544 7999999999999999987220 0 012
Q ss_pred HHHHHHHHHhcceeEEEeeccccCceeEEEEEeC
Q 044932 418 EEALTTLTASICWNILAHKTDEISEMGVKIYQKP 451 (689)
Q Consensus 418 ~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqKp 451 (689)
.+.+..+++..+|+.+.......+....++.+||
T Consensus 271 ~~~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 271 HAQTRAQLEEAGFTDLRFEDDRARLFPTVIARKP 304 (305)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTTSSSCEEEEECC
T ss_pred HHHHHHHHHHCCCEEEEEEcccCceeeEEEEecC
Confidence 4568899999999998766543344457788887
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.7e-13 Score=133.99 Aligned_cols=109 Identities=19% Similarity=0.189 Sum_probs=83.9
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCC
Q 044932 292 YLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFP 369 (689)
Q Consensus 292 Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFp 369 (689)
+.+.+.+.++. . ...+|||||||+|.++..|+.. .|+++|+++ .|++.|.++. ...+...+...+||+
T Consensus 22 ~~~~l~~~~~~-~---~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~-----~~~~~a~~~~-~~~~~~~d~~~~~~~ 91 (261)
T 3ege_A 22 IVNAIINLLNL-P---KGSVIADIGAGTGGYSVALANQGLFVYAVEPSI-----VMRQQAVVHP-QVEWFTGYAENLALP 91 (261)
T ss_dssp HHHHHHHHHCC-C---TTCEEEEETCTTSHHHHHHHTTTCEEEEECSCH-----HHHHSSCCCT-TEEEECCCTTSCCSC
T ss_pred HHHHHHHHhCC-C---CCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCH-----HHHHHHHhcc-CCEEEECchhhCCCC
Confidence 44555555541 1 4579999999999999998865 488998875 5676665554 455666777889999
Q ss_pred CCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 370 SGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 370 D~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+++||+|+|..++.+ ..++..+|.++.|+|| ||++++.+..
T Consensus 92 ~~~fD~v~~~~~l~~-~~~~~~~l~~~~~~Lk-gG~~~~~~~~ 132 (261)
T 3ege_A 92 DKSVDGVISILAIHH-FSHLEKSFQEMQRIIR-DGTIVLLTFD 132 (261)
T ss_dssp TTCBSEEEEESCGGG-CSSHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred CCCEeEEEEcchHhh-ccCHHHHHHHHHHHhC-CcEEEEEEcC
Confidence 999999999866544 5789999999999999 9988887643
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=5.1e-13 Score=126.82 Aligned_cols=121 Identities=15% Similarity=0.147 Sum_probs=90.9
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCC-cEEecCCCCCCCCCCCCcceEEeccccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFP-AVVSPLGNRRLPFPSGVFDAIHCDGCSITW 385 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~-~i~~~~dt~~LPFpD~SFDlVhcs~cli~W 385 (689)
..+|||+|||+|.++..|+.. .|+++|+++ .+++.|.+.++. ..+...+...+ +++++||+|+|..++.+
T Consensus 47 ~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~-----~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~- 119 (218)
T 3ou2_A 47 RGDVLELASGTGYWTRHLSGLADRVTALDGSA-----EMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAH- 119 (218)
T ss_dssp CSEEEEESCTTSHHHHHHHHHSSEEEEEESCH-----HHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEESCGGG-
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCH-----HHHHHHHhcCCCCeEEEecccccC-CCCCceeEEEEechhhc-
Confidence 468999999999998888754 588999875 577888777744 34555666666 88899999999865543
Q ss_pred cccH--HHHHHHHHhccCCCcEEEEEcCCCc-------------------------------hhHHHHHHHHHHhcceeE
Q 044932 386 HAHG--GKLLLEMNRILRPSGYFILSTKHDS-------------------------------IEEEEALTTLTASICWNI 432 (689)
Q Consensus 386 ~~d~--~~aL~EI~RVLRPGG~fVIsdp~~~-------------------------------le~~~~ie~La~~l~W~~ 432 (689)
..++ ..+|.++.|+|||||+|++.+.... ......+..+++..+|++
T Consensus 120 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v 199 (218)
T 3ou2_A 120 VPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSC 199 (218)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEE
Confidence 4454 7899999999999999999864210 012356888999999986
Q ss_pred EEee
Q 044932 433 LAHK 436 (689)
Q Consensus 433 v~~~ 436 (689)
....
T Consensus 200 ~~~~ 203 (218)
T 3ou2_A 200 SVDE 203 (218)
T ss_dssp EEEE
T ss_pred Eeee
Confidence 5443
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.44 E-value=4.9e-13 Score=130.83 Aligned_cols=124 Identities=15% Similarity=0.119 Sum_probs=92.4
Q ss_pred CCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCC-----CcEEecCCCCCCCCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGF-----PAVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL-----~~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
...+|||||||+|.++..|+.. .|+++|+++ .+++.|.++.. ...+...+...+++++++||+|+|.
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 153 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITE-----DFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQ 153 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCH-----HHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCH-----HHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEc
Confidence 3579999999999999888764 588999876 56777766532 1234556677888988899999998
Q ss_pred cccccccccH--HHHHHHHHhccCCCcEEEEEcCCC------------chhHHHHHHHHHHhcceeEEEeec
Q 044932 380 GCSITWHAHG--GKLLLEMNRILRPSGYFILSTKHD------------SIEEEEALTTLTASICWNILAHKT 437 (689)
Q Consensus 380 ~cli~W~~d~--~~aL~EI~RVLRPGG~fVIsdp~~------------~le~~~~ie~La~~l~W~~v~~~~ 437 (689)
.++.+ ..++ ..+|.++.|+|||||+|++.++.. .......+..+++..+|+.+....
T Consensus 154 ~~l~~-~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 224 (241)
T 2ex4_A 154 WVIGH-LTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEER 224 (241)
T ss_dssp SCGGG-SCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred chhhh-CCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeee
Confidence 66544 4443 489999999999999999976421 111345688899999998876543
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.3e-13 Score=129.00 Aligned_cols=120 Identities=25% Similarity=0.292 Sum_probs=91.4
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc-CCCcEEecCCCCCCCCCCCCcceEEeccccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER-GFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITW 385 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR-GL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W 385 (689)
..+|||+|||+|.++..|+.. .|+++|+++ .+++.|.++ ++.... .+...+| ++++||+|+|..++.++
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~--~d~~~~~-~~~~fD~v~~~~~l~~~ 115 (211)
T 3e23_A 44 GAKILELGCGAGYQAEAMLAAGFDVDATDGSP-----ELAAEASRRLGRPVRT--MLFHQLD-AIDAYDAVWAHACLLHV 115 (211)
T ss_dssp TCEEEESSCTTSHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHTSCCEE--CCGGGCC-CCSCEEEEEECSCGGGS
T ss_pred CCcEEEECCCCCHHHHHHHHcCCeEEEECCCH-----HHHHHHHHhcCCceEE--eeeccCC-CCCcEEEEEecCchhhc
Confidence 468999999999999888865 588999875 577777766 554443 3556777 78999999998766543
Q ss_pred c-ccHHHHHHHHHhccCCCcEEEEEcCCCc------------hhHHHHHHHHHHhcc-eeEEEee
Q 044932 386 H-AHGGKLLLEMNRILRPSGYFILSTKHDS------------IEEEEALTTLTASIC-WNILAHK 436 (689)
Q Consensus 386 ~-~d~~~aL~EI~RVLRPGG~fVIsdp~~~------------le~~~~ie~La~~l~-W~~v~~~ 436 (689)
. .+...+|.++.|+|||||+|++..+... ....+.+..+++..+ |+.+...
T Consensus 116 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~ 180 (211)
T 3e23_A 116 PRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVE 180 (211)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEE
Confidence 2 2667899999999999999999865421 113456889999999 9887554
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.1e-13 Score=126.56 Aligned_cols=123 Identities=19% Similarity=0.224 Sum_probs=92.6
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc----CC------CcEEecCCCCCCCCCCCCcceE
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER----GF------PAVVSPLGNRRLPFPSGVFDAI 376 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR----GL------~~i~~~~dt~~LPFpD~SFDlV 376 (689)
..+|||+|||+|.++..|+.. .|+++|+++ .+++.|.++ ++ ...+...+...+|+++++||+|
T Consensus 31 ~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 105 (235)
T 3sm3_A 31 DDEILDIGCGSGKISLELASKGYSVTGIDINS-----EAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA 105 (235)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred CCeEEEECCCCCHHHHHHHhCCCeEEEEECCH-----HHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence 568999999999999888765 588999875 567777664 33 1244566778889999999999
Q ss_pred EeccccccccccHH---HHHHHHHhccCCCcEEEEEcCCCc--------------------------------------h
Q 044932 377 HCDGCSITWHAHGG---KLLLEMNRILRPSGYFILSTKHDS--------------------------------------I 415 (689)
Q Consensus 377 hcs~cli~W~~d~~---~aL~EI~RVLRPGG~fVIsdp~~~--------------------------------------l 415 (689)
+|..++. +..++. .+|.++.|+|||||++++.+.... .
T Consensus 106 ~~~~~l~-~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (235)
T 3sm3_A 106 VMQAFLT-SVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHH 184 (235)
T ss_dssp EEESCGG-GCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEEC
T ss_pred EEcchhh-cCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEe
Confidence 9986554 355666 899999999999999999864210 1
Q ss_pred hHHHHHHHHHHhcceeEEEeec
Q 044932 416 EEEEALTTLTASICWNILAHKT 437 (689)
Q Consensus 416 e~~~~ie~La~~l~W~~v~~~~ 437 (689)
...+.+.++++..+|+.+....
T Consensus 185 ~~~~~l~~ll~~aGf~~~~~~~ 206 (235)
T 3sm3_A 185 FTEKELVFLLTDCRFEIDYFRV 206 (235)
T ss_dssp BCHHHHHHHHHTTTEEEEEEEE
T ss_pred CCHHHHHHHHHHcCCEEEEEEe
Confidence 1235688899999998876543
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=7.5e-13 Score=129.86 Aligned_cols=98 Identities=23% Similarity=0.367 Sum_probs=77.6
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH----cCCC-cEEecCCCCCCCCCCCCcceEEecc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE----RGFP-AVVSPLGNRRLPFPSGVFDAIHCDG 380 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e----RGL~-~i~~~~dt~~LPFpD~SFDlVhcs~ 380 (689)
...+|||+|||+|.++..|+.. .|+++|+++. +++.|.+ .+++ ..+...+...+||++++||+|+|..
T Consensus 21 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 95 (239)
T 1xxl_A 21 AEHRVLDIGAGAGHTALAFSPYVQECIGVDATKE-----MVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRY 95 (239)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHH-----HHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEES
T ss_pred CCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHH-----HHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECC
Confidence 4578999999999999888764 5899998864 4444443 3554 3455667788999999999999986
Q ss_pred ccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 381 CSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 381 cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
++.+ ..++..+|.++.|+|||||+|++.+.
T Consensus 96 ~l~~-~~~~~~~l~~~~~~LkpgG~l~~~~~ 125 (239)
T 1xxl_A 96 AAHH-FSDVRKAVREVARVLKQDGRFLLVDH 125 (239)
T ss_dssp CGGG-CSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chhh-ccCHHHHHHHHHHHcCCCcEEEEEEc
Confidence 6544 56889999999999999999999754
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.43 E-value=7e-13 Score=129.69 Aligned_cols=96 Identities=20% Similarity=0.260 Sum_probs=78.1
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcC----CCcEEecCCCCCCCCCCCCcceEEeccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERG----FPAVVSPLGNRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRG----L~~i~~~~dt~~LPFpD~SFDlVhcs~c 381 (689)
...+|||+|||+|.++..|+.. .|+++|+++ .|++.|.++- ....+...+...+||++++||+|+|..+
T Consensus 39 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 113 (263)
T 2yqz_A 39 EEPVFLELGVGTGRIALPLIARGYRYIALDADA-----AMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHL 113 (263)
T ss_dssp SCCEEEEETCTTSTTHHHHHTTTCEEEEEESCH-----HHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESC
T ss_pred CCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCc
Confidence 3578999999999999888865 588898875 5777777652 2344556677889999999999998754
Q ss_pred cccccccHHHHHHHHHhccCCCcEEEEE
Q 044932 382 SITWHAHGGKLLLEMNRILRPSGYFILS 409 (689)
Q Consensus 382 li~W~~d~~~aL~EI~RVLRPGG~fVIs 409 (689)
++|..++..+|.++.|+|||||++++.
T Consensus 114 -l~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 114 -WHLVPDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp -GGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred -hhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence 466778899999999999999999987
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.3e-13 Score=133.71 Aligned_cols=121 Identities=15% Similarity=0.215 Sum_probs=91.5
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc----CCC--cEEecCCCCCCC-CCCCCcceEEec
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER----GFP--AVVSPLGNRRLP-FPSGVFDAIHCD 379 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR----GL~--~i~~~~dt~~LP-FpD~SFDlVhcs 379 (689)
..+|||||||+|.++..|+.. .|+++|+++ .+++.|.++ |+. ..+...+...+| +++++||+|+|.
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~-----~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 143 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAERGHQVILCDLSA-----QMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFH 143 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEE
T ss_pred CCEEEEeCCcchHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEEC
Confidence 468999999999999888765 588999876 456665553 442 334556667777 888999999997
Q ss_pred cccccccccHHHHHHHHHhccCCCcEEEEEcCCC-------------------------------chhHHHHHHHHHHhc
Q 044932 380 GCSITWHAHGGKLLLEMNRILRPSGYFILSTKHD-------------------------------SIEEEEALTTLTASI 428 (689)
Q Consensus 380 ~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~-------------------------------~le~~~~ie~La~~l 428 (689)
.++ ++..++..+|.++.|+|||||+|++..+.. .......+..+++..
T Consensus 144 ~~l-~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a 222 (285)
T 4htf_A 144 AVL-EWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEA 222 (285)
T ss_dssp SCG-GGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHT
T ss_pred chh-hcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHC
Confidence 655 456788999999999999999999986421 011225688888888
Q ss_pred ceeEEEe
Q 044932 429 CWNILAH 435 (689)
Q Consensus 429 ~W~~v~~ 435 (689)
+|+++..
T Consensus 223 Gf~v~~~ 229 (285)
T 4htf_A 223 GWQIMGK 229 (285)
T ss_dssp TCEEEEE
T ss_pred CCceeee
Confidence 9987754
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-12 Score=124.99 Aligned_cols=109 Identities=18% Similarity=0.198 Sum_probs=79.1
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC-CeEEEEcCCcccHHHHHHHHHHc----CCCcEEecCCCCC
Q 044932 291 HYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK-EVLTLTVGLKDDLVDLAQVALER----GFPAVVSPLGNRR 365 (689)
Q Consensus 291 ~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~-~V~gmDIsp~D~seamlq~A~eR----GL~~i~~~~dt~~ 365 (689)
.+.+.+...++ ...+|||+|||+|.++..|+.. .|+++|+++ .+++.|.++ +....+...+...
T Consensus 22 ~~~~~~~~~~~------~~~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~~~~~d~~~ 90 (243)
T 3d2l_A 22 EWVAWVLEQVE------PGKRIADIGCGTGTATLLLADHYEVTGVDLSE-----EMLEIAQEKAMETNRHVDFWVQDMRE 90 (243)
T ss_dssp HHHHHHHHHSC------TTCEEEEESCTTCHHHHHHTTTSEEEEEESCH-----HHHHHHHHHHHHTTCCCEEEECCGGG
T ss_pred HHHHHHHHHcC------CCCeEEEecCCCCHHHHHHhhCCeEEEEECCH-----HHHHHHHHhhhhcCCceEEEEcChhh
Confidence 44555555543 2368999999999999888764 688999876 455555443 4444555667777
Q ss_pred CCCCCCCcceEEecccccccc---ccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 366 LPFPSGVFDAIHCDGCSITWH---AHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 366 LPFpD~SFDlVhcs~cli~W~---~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
+|++ ++||+|+|....+++. .+...+|.++.|+|||||+|++..+
T Consensus 91 ~~~~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 138 (243)
T 3d2l_A 91 LELP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVH 138 (243)
T ss_dssp CCCS-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCC-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 8887 8999999875234444 4567899999999999999998643
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.8e-13 Score=127.22 Aligned_cols=98 Identities=18% Similarity=0.201 Sum_probs=78.7
Q ss_pred CCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCC--CcEEecCCCCCCCCCCCCcceEEecccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGF--PAVVSPLGNRRLPFPSGVFDAIHCDGCS 382 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL--~~i~~~~dt~~LPFpD~SFDlVhcs~cl 382 (689)
...+|||+|||+|.++..|+.. .|+++|+++ .+++.|.++.. ...+...+...+|+++++||+|+|..++
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 117 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSE-----KMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLAL 117 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCH-----HHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCG
T ss_pred CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCH-----HHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEeccc
Confidence 3578999999999998888754 588898875 57888887643 2344556677788989999999998654
Q ss_pred ccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 383 ITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 383 i~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
++..++..+|.++.|+|||||+|++..+
T Consensus 118 -~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 118 -HYVEDVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp -GGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -cccchHHHHHHHHHHhcCcCcEEEEEeC
Confidence 4456889999999999999999999864
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.4e-13 Score=133.00 Aligned_cols=98 Identities=13% Similarity=0.209 Sum_probs=78.5
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITW 385 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W 385 (689)
...+|||||||+|.++..|+.. .|+++|+++ .|++.|.++.....+...+...+|+ +++||+|+|..+ ++|
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~-----~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~-l~~ 129 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAA-----TMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSNAM-LHW 129 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEEEEESC-GGG
T ss_pred CCCEEEEecCCCCHHHHHHHhCCCeEEEEECCH-----HHHHHHHhhCCCCEEEECChhhCCc-CCCcCEEEEcch-hhh
Confidence 3578999999999999888754 588999875 5778887764333445567778888 489999998754 466
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 386 HAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 386 ~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
..++..+|.++.|+|||||+|++..+.
T Consensus 130 ~~d~~~~l~~~~~~LkpgG~l~~~~~~ 156 (279)
T 3ccf_A 130 VKEPEAAIASIHQALKSGGRFVAEFGG 156 (279)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CcCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 788999999999999999999998754
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-12 Score=127.73 Aligned_cols=98 Identities=11% Similarity=0.113 Sum_probs=79.6
Q ss_pred CCCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
...+|||+|||+|.++..|+. ..|+++|+++ .|++.|.++.....+...+...+| ++++||+|+|..+ +
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~-----~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~-l 105 (259)
T 2p35_A 33 RVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDD-----DMLEKAADRLPNTNFGKADLATWK-PAQKADLLYANAV-F 105 (259)
T ss_dssp CCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCH-----HHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEESC-G
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCH-----HHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEeCc-h
Confidence 356899999999998887764 3699999875 578888777434455566777888 7899999998754 4
Q ss_pred cccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 384 TWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 384 ~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+|..++..+|.++.|+|||||+|++..+.
T Consensus 106 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 106 QWVPDHLAVLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp GGSTTHHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred hhCCCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 66788999999999999999999998754
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-13 Score=137.43 Aligned_cols=114 Identities=17% Similarity=0.225 Sum_probs=83.0
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc----CC-----CcEE
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER----GF-----PAVV 358 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR----GL-----~~i~ 358 (689)
..|.+.|...++. . ...+|||||||+|.++..|+.. .|+++|+++ .|++.|.++ +. ...+
T Consensus 43 ~~~~~~l~~~l~~-~---~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~-----~~l~~a~~~~~~~~~~~~~~~~~~ 113 (293)
T 3thr_A 43 AEYKAWLLGLLRQ-H---GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASD-----KMLKYALKERWNRRKEPAFDKWVI 113 (293)
T ss_dssp HHHHHHHHHHHHH-T---TCCEEEETTCTTSHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHHTTTSHHHHTCEE
T ss_pred HHHHHHHHHHhcc-c---CCCEEEEecCCCCHHHHHHHHCCCeEEEEECCH-----HHHHHHHHhhhhcccccccceeeE
Confidence 4445555555542 1 3578999999999999888865 589999886 456666543 11 1233
Q ss_pred ecCCCCCCC---CCCCCcceEEecccccccccc-------HHHHHHHHHhccCCCcEEEEEcCC
Q 044932 359 SPLGNRRLP---FPSGVFDAIHCDGCSITWHAH-------GGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 359 ~~~dt~~LP---FpD~SFDlVhcs~cli~W~~d-------~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
...+...+| |++++||+|+|....+++..+ ...+|.++.|+|||||+|++..+.
T Consensus 114 ~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 114 EEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp EECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred eecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 445666777 889999999997334444556 789999999999999999999876
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.9e-12 Score=125.12 Aligned_cols=117 Identities=22% Similarity=0.232 Sum_probs=91.4
Q ss_pred CCeEEEECCccchhHHHhhcCCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecccccccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWHAH 388 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~~d 388 (689)
..+|||+|||+|.++..|+.. +++|+++ .+++.|.++++. +...+...+|+++++||+|+|..++ ++..+
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~--~~vD~s~-----~~~~~a~~~~~~--~~~~d~~~~~~~~~~fD~v~~~~~l-~~~~~ 117 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK--IGVEPSE-----RMAEIARKRGVF--VLKGTAENLPLKDESFDFALMVTTI-CFVDD 117 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC--EEEESCH-----HHHHHHHHTTCE--EEECBTTBCCSCTTCEEEEEEESCG-GGSSC
T ss_pred CCcEEEeCCCCCHHHHHHHHH--hccCCCH-----HHHHHHHhcCCE--EEEcccccCCCCCCCeeEEEEcchH-hhccC
Confidence 468999999999999988877 8888875 578888887543 3445667789999999999998654 44678
Q ss_pred HHHHHHHHHhccCCCcEEEEEcCCCch---------------------hHHHHHHHHHHhcceeEEEe
Q 044932 389 GGKLLLEMNRILRPSGYFILSTKHDSI---------------------EEEEALTTLTASICWNILAH 435 (689)
Q Consensus 389 ~~~aL~EI~RVLRPGG~fVIsdp~~~l---------------------e~~~~ie~La~~l~W~~v~~ 435 (689)
+..+|.++.|+|+|||++++.++.... .....+..+++..+|+.+..
T Consensus 118 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 185 (219)
T 1vlm_A 118 PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKV 185 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEE
Confidence 899999999999999999998654210 12356888888888887654
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-12 Score=133.73 Aligned_cols=122 Identities=12% Similarity=0.039 Sum_probs=92.0
Q ss_pred CCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHH----cCCC--cEEecCCCCCCCCCCCCcceEEe
Q 044932 308 NIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALE----RGFP--AVVSPLGNRRLPFPSGVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~e----RGL~--~i~~~~dt~~LPFpD~SFDlVhc 378 (689)
...+|||+|||+|.++..|+.. .|+++|+++. +++.|.+ .|+. ..+...+...+||++++||+|+|
T Consensus 117 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~-----~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~ 191 (312)
T 3vc1_A 117 PDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAA-----QADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWN 191 (312)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHH-----HHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHH-----HHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEE
Confidence 4579999999999998887753 6899998863 4555444 4654 45666777889999999999999
Q ss_pred ccccccccccHHHHHHHHHhccCCCcEEEEEcCC--C-c--h---------------hHHHHHHHHHHhcceeEEEee
Q 044932 379 DGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH--D-S--I---------------EEEEALTTLTASICWNILAHK 436 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~--~-~--l---------------e~~~~ie~La~~l~W~~v~~~ 436 (689)
..++.+ . +...+|.++.|+|||||+|++.++. . . . .....+..+++..+|+.+...
T Consensus 192 ~~~l~~-~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~ 267 (312)
T 3vc1_A 192 NESTMY-V-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIV 267 (312)
T ss_dssp ESCGGG-S-CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEEE
T ss_pred CCchhh-C-CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 766544 4 5889999999999999999998632 1 0 0 012467888889999876543
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.41 E-value=4.7e-13 Score=126.80 Aligned_cols=117 Identities=16% Similarity=0.119 Sum_probs=86.6
Q ss_pred eEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc----CCCcEEecCCCCCCCCCCCCcceEEecccccc
Q 044932 311 VVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER----GFPAVVSPLGNRRLPFPSGVFDAIHCDGCSIT 384 (689)
Q Consensus 311 ~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR----GL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~ 384 (689)
+|||+|||+|.++..|+.. .|+++|+++ .+++.|.++ ++...+...+...+|+++++||+|+|..+++
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~- 105 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGYEVTAVDQSS-----VGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFCHL- 105 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTCEEEEECSSH-----HHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEECCCC-
T ss_pred CEEEECCCCCHhHHHHHhCCCeEEEEECCH-----HHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEhhcC-
Confidence 8999999999999888865 588888876 455555443 5555566677778889999999999864332
Q ss_pred ccccHHHHHHHHHhccCCCcEEEEEcCCC--------------chhHHHHHHHHHHhcceeEEEe
Q 044932 385 WHAHGGKLLLEMNRILRPSGYFILSTKHD--------------SIEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 385 W~~d~~~aL~EI~RVLRPGG~fVIsdp~~--------------~le~~~~ie~La~~l~W~~v~~ 435 (689)
...+...+|.++.|+|||||++++.+... .....+.+..+++ +|+++..
T Consensus 106 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~ 168 (202)
T 2kw5_A 106 PSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIA 168 (202)
T ss_dssp CHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEE
Confidence 12467889999999999999999986421 1112356777777 8887654
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=5.7e-13 Score=135.21 Aligned_cols=96 Identities=15% Similarity=0.123 Sum_probs=73.3
Q ss_pred CCCeEEEECCccchhHHHhhcC------CeEEEEcCCcccHHHHHHHHHHc----CC--CcEEecCCCCCCCCCCCCcce
Q 044932 308 NIRVVLEIGSADLSFVASLLAK------EVLTLTVGLKDDLVDLAQVALER----GF--PAVVSPLGNRRLPFPSGVFDA 375 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~------~V~gmDIsp~D~seamlq~A~eR----GL--~~i~~~~dt~~LPFpD~SFDl 375 (689)
+..+|||||||+|.++..|+.. .|+|+|+++ .|++.|+++ +. ...+...+...+|++ .||+
T Consensus 70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~-----~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~ 142 (261)
T 4gek_A 70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSP-----AMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASM 142 (261)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCH-----HHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEE
T ss_pred CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCH-----HHHHHHHHHHHhhccCceEEEeeccccccccc--cccc
Confidence 3568999999999998887643 489999876 577777664 33 234556677788876 5999
Q ss_pred EEeccccccccc--cHHHHHHHHHhccCCCcEEEEEcC
Q 044932 376 IHCDGCSITWHA--HGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 376 Vhcs~cli~W~~--d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
|+|..++ +|.. +...+|.+++|+|||||+|++++.
T Consensus 143 v~~~~~l-~~~~~~~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 143 VVLNFTL-QFLEPSERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp EEEESCG-GGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceeeeee-eecCchhHhHHHHHHHHHcCCCcEEEEEec
Confidence 9987654 4443 335789999999999999999864
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=132.63 Aligned_cols=97 Identities=19% Similarity=0.168 Sum_probs=75.9
Q ss_pred CeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc----C----CCcEEecCCCCCCCCCCCCcceEEec
Q 044932 310 RVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER----G----FPAVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR----G----L~~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
.+|||||||+|.++..|+.. .|+++|+++ .+++.|.++ + ....+...+...+|+ +++||+|+|+
T Consensus 84 ~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~-----~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~ 157 (299)
T 3g2m_A 84 GPVLELAAGMGRLTFPFLDLGWEVTALELST-----SVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVIS 157 (299)
T ss_dssp SCEEEETCTTTTTHHHHHTTTCCEEEEESCH-----HHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEEC
T ss_pred CcEEEEeccCCHHHHHHHHcCCeEEEEECCH-----HHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEEC
Confidence 48999999999999988865 589999886 466666554 2 234456677778888 5899999987
Q ss_pred cccccccc--cHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 380 GCSITWHA--HGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 380 ~cli~W~~--d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
...+++.. +...+|.++.|+|||||+|++..+.
T Consensus 158 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 192 (299)
T 3g2m_A 158 SGSINELDEADRRGLYASVREHLEPGGKFLLSLAM 192 (299)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence 66666543 3578999999999999999998643
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.40 E-value=4.6e-12 Score=121.68 Aligned_cols=140 Identities=10% Similarity=0.121 Sum_probs=96.4
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc----CC------CcEEecCCCCCCCCCCCCc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER----GF------PAVVSPLGNRRLPFPSGVF 373 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR----GL------~~i~~~~dt~~LPFpD~SF 373 (689)
...+|||+|||+|.++..|+.. .|+++|+++ .+++.|.++ ++ ...+...+...+++++++|
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~-----~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 103 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSY-----SVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGY 103 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCH-----HHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTC
T ss_pred CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCH-----HHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCC
Confidence 3579999999999999888753 589999876 466666654 22 2344455667778888999
Q ss_pred ceEEeccccccccccH--HHHHHHHHhccCCCcEEEEEcCCCc------h-------------hHHHHHH----HHHHhc
Q 044932 374 DAIHCDGCSITWHAHG--GKLLLEMNRILRPSGYFILSTKHDS------I-------------EEEEALT----TLTASI 428 (689)
Q Consensus 374 DlVhcs~cli~W~~d~--~~aL~EI~RVLRPGG~fVIsdp~~~------l-------------e~~~~ie----~La~~l 428 (689)
|+|+|..++.+ ..++ ..+|.++.|+|||||++++.....+ + .....+. .+++..
T Consensus 104 D~V~~~~~l~~-~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 182 (219)
T 3jwg_A 104 DAATVIEVIEH-LDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKY 182 (219)
T ss_dssp SEEEEESCGGG-CCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHH
T ss_pred CEEEEHHHHHh-CCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHC
Confidence 99999866544 4444 6899999999999997766542211 0 0123344 888899
Q ss_pred ceeEEEeecc----cc-CceeEEEEEeCCC
Q 044932 429 CWNILAHKTD----EI-SEMGVKIYQKPES 453 (689)
Q Consensus 429 ~W~~v~~~~~----~~-g~~~i~IwqKp~~ 453 (689)
+|++....-. .. ....++|++|...
T Consensus 183 Gf~v~~~~~g~~~~~~g~~~qi~~~~~~~~ 212 (219)
T 3jwg_A 183 GYSVRFLQIGEIDDEFGSPTQMGVFTLGAG 212 (219)
T ss_dssp TEEEEEEEESCCCTTSCCSEEEEEEEECC-
T ss_pred CcEEEEEecCCccccCCCCeEEEEEeccCC
Confidence 9987544211 12 2456999999754
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.9e-12 Score=122.40 Aligned_cols=118 Identities=20% Similarity=0.276 Sum_probs=84.9
Q ss_pred cchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcC---CCcEE
Q 044932 285 FKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERG---FPAVV 358 (689)
Q Consensus 285 F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRG---L~~i~ 358 (689)
|......+.+.|..+++ ...+|||+|||+|.++..|+.. .|+++|+++ .+++.|.++. ....+
T Consensus 25 ~~~~~~~~~~~l~~~~~------~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~-----~~~~~a~~~~~~~~~i~~ 93 (215)
T 2pxx_A 25 WFGDFSSFRALLEPELR------PEDRILVLGCGNSALSYELFLGGFPNVTSVDYSS-----VVVAAMQACYAHVPQLRW 93 (215)
T ss_dssp TTCCHHHHHHHHGGGCC------TTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCH-----HHHHHHHHHTTTCTTCEE
T ss_pred cccCHHHHHHHHHHhcC------CCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCH-----HHHHHHHHhcccCCCcEE
Confidence 33444455566665542 3468999999999998888754 589999876 4666766652 12344
Q ss_pred ecCCCCCCCCCCCCcceEEeccccc--------cc------cccHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 359 SPLGNRRLPFPSGVFDAIHCDGCSI--------TW------HAHGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 359 ~~~dt~~LPFpD~SFDlVhcs~cli--------~W------~~d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
...+...+|+++++||+|+|..++. +| ..+...+|.++.|+|||||++++.++..
T Consensus 94 ~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 94 ETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp EECCTTSCCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEcchhcCCCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 5567777899999999999864331 12 1245789999999999999999998764
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.4e-12 Score=120.56 Aligned_cols=120 Identities=15% Similarity=0.141 Sum_probs=85.4
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH----cCC-CcEEecCCCCCCCCCCCCcceEEeccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE----RGF-PAVVSPLGNRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e----RGL-~~i~~~~dt~~LPFpD~SFDlVhcs~c 381 (689)
..+|||+|||+|.++..|+.. .|+++|+++. +++.|.+ .++ ...+...+...+|+ +++||+|+|..+
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~ 106 (199)
T 2xvm_A 33 PGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAM-----SIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVV 106 (199)
T ss_dssp SCEEEEETCTTSHHHHHHHHTTCEEEEEESCHH-----HHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESC
T ss_pred CCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHH-----HHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcch
Confidence 469999999999999888755 5899998864 4444433 455 34455667777888 799999999866
Q ss_pred ccccc-ccHHHHHHHHHhccCCCcEEEEEcCC-----------CchhHHHHHHHHHHhcceeEEEee
Q 044932 382 SITWH-AHGGKLLLEMNRILRPSGYFILSTKH-----------DSIEEEEALTTLTASICWNILAHK 436 (689)
Q Consensus 382 li~W~-~d~~~aL~EI~RVLRPGG~fVIsdp~-----------~~le~~~~ie~La~~l~W~~v~~~ 436 (689)
+.++. .+...+|.++.|+|||||++++.+.. ......+.+.+++.. |+.+...
T Consensus 107 l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~ 171 (199)
T 2xvm_A 107 LMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYN 171 (199)
T ss_dssp GGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEec
Confidence 54432 26789999999999999998876421 111123457778776 8776544
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.7e-13 Score=137.27 Aligned_cols=99 Identities=12% Similarity=0.021 Sum_probs=70.0
Q ss_pred CCCeEEEECCccchhHHH----hhc--CCe----EEEEcCCcccHHHHHHHHHHc-----CCCcE---EecCCCCCC---
Q 044932 308 NIRVVLEIGSADLSFVAS----LLA--KEV----LTLTVGLKDDLVDLAQVALER-----GFPAV---VSPLGNRRL--- 366 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~----La~--~~V----~gmDIsp~D~seamlq~A~eR-----GL~~i---~~~~dt~~L--- 366 (689)
...+|||||||+|.++.. ++. .++ +++|+++ .|++.|.++ ++..+ +...+...+
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~-----~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 126 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSA-----EQIAKYKELVAKTSNLENVKFAWHKETSSEYQSR 126 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCH-----HHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCH-----HHHHHHHHHHHhccCCCcceEEEEecchhhhhhh
Confidence 346899999999976543 322 223 7777664 577776654 33332 223333333
Q ss_pred ---CCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 367 ---PFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 367 ---PFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
||++++||+|+|..+ ++|..|+..+|.|++|+|||||+|++....
T Consensus 127 ~~~~~~~~~fD~V~~~~~-l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~ 174 (292)
T 2aot_A 127 MLEKKELQKWDFIHMIQM-LYYVKDIPATLKFFHSLLGTNAKMLIIVVS 174 (292)
T ss_dssp HHTTTCCCCEEEEEEESC-GGGCSCHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hccccCCCceeEEEEeee-eeecCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 377899999999765 466789999999999999999999998543
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4.5e-12 Score=121.25 Aligned_cols=98 Identities=17% Similarity=0.193 Sum_probs=76.2
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCC---CcEEecCCCCCCCCCCCCcceEEecccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGF---PAVVSPLGNRRLPFPSGVFDAIHCDGCS 382 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL---~~i~~~~dt~~LPFpD~SFDlVhcs~cl 382 (689)
...+|||+|||+|.++..|+.. .|+++|+++ .+++.|.++.. ...+...+...++ ++++||+|+|..++
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l 124 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMP-----RAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAEVL 124 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHGGGEEEEEEEESCH-----HHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEESCG
T ss_pred CCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCH-----HHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEccHH
Confidence 3568999999999999988875 488898875 57777776532 2345566777777 67999999998655
Q ss_pred ccccccH---HHHHHHHHhccCCCcEEEEEcCC
Q 044932 383 ITWHAHG---GKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 383 i~W~~d~---~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
++..++ ..+|.++.|+|||||+|+++++.
T Consensus 125 -~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 125 -YYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp -GGSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred -HhCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 445555 57799999999999999998754
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-12 Score=123.40 Aligned_cols=120 Identities=14% Similarity=0.109 Sum_probs=89.4
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCC--CCCCCCCCcceEEeccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNR--RLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~--~LPFpD~SFDlVhcs~cli 383 (689)
...+|||+|||+|.++..|+.. .|+++|+++ .+++.|.++... +...+.. .+|+++++||+|+|..++.
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~-----~~~~~~~~~~~~--~~~~d~~~~~~~~~~~~fD~v~~~~~l~ 104 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKENGTRVSGIEAFP-----EAAEQAKEKLDH--VVLGDIETMDMPYEEEQFDCVIFGDVLE 104 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTTTCEEEEEESSH-----HHHHHHHTTSSE--EEESCTTTCCCCSCTTCEEEEEEESCGG
T ss_pred CCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCH-----HHHHHHHHhCCc--EEEcchhhcCCCCCCCccCEEEECChhh
Confidence 4579999999999999888765 588888775 577777766432 3333443 3788899999999976554
Q ss_pred cccccHHHHHHHHHhccCCCcEEEEEcCCCc---------------------------hhHHHHHHHHHHhcceeEEEe
Q 044932 384 TWHAHGGKLLLEMNRILRPSGYFILSTKHDS---------------------------IEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 384 ~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~---------------------------le~~~~ie~La~~l~W~~v~~ 435 (689)
+..++..+|.++.|+|+|||++++..+... ......+..+++..+|+.+..
T Consensus 105 -~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 182 (230)
T 3cc8_A 105 -HLFDPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKV 182 (230)
T ss_dssp -GSSCHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEE
T ss_pred -hcCCHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEEE
Confidence 456888999999999999999999875411 012356778888888877643
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=6.2e-12 Score=125.85 Aligned_cols=122 Identities=14% Similarity=0.127 Sum_probs=84.5
Q ss_pred cCCCCcccchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhc---CCeEEEEcCCcccHHHHHHHHHHc--
Q 044932 278 FPQNQSEFKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA---KEVLTLTVGLKDDLVDLAQVALER-- 352 (689)
Q Consensus 278 Fpgggt~F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~---~~V~gmDIsp~D~seamlq~A~eR-- 352 (689)
|+.....+.......++.+.+.++ +. ...+|||||||+|.++..++. ..|+++|+++ .+++.|.++
T Consensus 38 ~~~~~~~l~~a~~~~~~~~~~~~~-~~---~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~-----~~~~~a~~~~~ 108 (287)
T 1kpg_A 38 FERDDMTLQEAQIAKIDLALGKLG-LQ---PGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSK-----NQANHVQQLVA 108 (287)
T ss_dssp CSSTTCCHHHHHHHHHHHHHTTTT-CC---TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCH-----HHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHHHHcC-CC---CcCEEEEECCcccHHHHHHHHHcCCEEEEEECCH-----HHHHHHHHHHH
Confidence 443333444444555566655543 22 357899999999999887773 4689999876 456666554
Q ss_pred --CCC--cEEecCCCCCCCCCCCCcceEEecccccccc-ccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 353 --GFP--AVVSPLGNRRLPFPSGVFDAIHCDGCSITWH-AHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 353 --GL~--~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~-~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
++. ..+...+...+| ++||+|+|..++.|+. .+...+|.++.|+|||||++++.++
T Consensus 109 ~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 169 (287)
T 1kpg_A 109 NSENLRSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI 169 (287)
T ss_dssp TCCCCSCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred hcCCCCCeEEEECChhhCC---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 432 334445555554 8999999987665533 5778999999999999999999864
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.38 E-value=5.1e-13 Score=133.77 Aligned_cols=123 Identities=10% Similarity=0.050 Sum_probs=83.1
Q ss_pred CCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHc------CCC-----------------------
Q 044932 308 NIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALER------GFP----------------------- 355 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eR------GL~----------------------- 355 (689)
...+|||||||+|.++..++.. .|+++|+++. |++.|.++ ++.
T Consensus 55 ~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~-----~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~ 129 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDR-----NREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEE 129 (263)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHH-----HHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCceEEEeCCCccHHHHHHHHhhhcceeeccccHH-----HHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHH
Confidence 3568999999999877655543 4899999874 55544432 000
Q ss_pred -----c-EEecCCCCC-CCCC---CCCcceEEecccccccc---ccHHHHHHHHHhccCCCcEEEEEcCCC---------
Q 044932 356 -----A-VVSPLGNRR-LPFP---SGVFDAIHCDGCSITWH---AHGGKLLLEMNRILRPSGYFILSTKHD--------- 413 (689)
Q Consensus 356 -----~-i~~~~dt~~-LPFp---D~SFDlVhcs~cli~W~---~d~~~aL~EI~RVLRPGG~fVIsdp~~--------- 413 (689)
. .+...|... .|++ +++||+|+|+.++.+-. ++...+|.++.|+|||||+|++++...
T Consensus 130 ~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~ 209 (263)
T 2a14_A 130 KLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKR 209 (263)
T ss_dssp HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTE
T ss_pred HHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCe
Confidence 0 133445444 4543 67999999987764321 355789999999999999999996321
Q ss_pred ----chhHHHHHHHHHHhcceeEEEe
Q 044932 414 ----SIEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 414 ----~le~~~~ie~La~~l~W~~v~~ 435 (689)
.....+.+..++...+|+.+..
T Consensus 210 ~~~~~~~~~~~l~~~l~~aGF~i~~~ 235 (263)
T 2a14_A 210 EFSCVALEKGEVEQAVLDAGFDIEQL 235 (263)
T ss_dssp EEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred EeeccccCHHHHHHHHHHCCCEEEEE
Confidence 1113456888899999987654
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-12 Score=131.94 Aligned_cols=95 Identities=12% Similarity=0.156 Sum_probs=75.8
Q ss_pred CCCeEEEECCccchhHHHhh---cC--CeEEEEcCCcccHHHHHHHHHHc-------CCCcEEecCCCCCCCCCC-----
Q 044932 308 NIRVVLEIGSADLSFVASLL---AK--EVLTLTVGLKDDLVDLAQVALER-------GFPAVVSPLGNRRLPFPS----- 370 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La---~~--~V~gmDIsp~D~seamlq~A~eR-------GL~~i~~~~dt~~LPFpD----- 370 (689)
...+|||||||+|.++..|+ .. .|+++|+++ .|++.|.++ .....+...+...+|+++
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~-----~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 110 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSA-----TMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVD 110 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCH-----HHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTT
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCH-----HHHHHHHHHHHhccCCCCceEEEEcCHHhCCcccccccc
Confidence 45799999999999998888 33 489999886 455655553 223455667778888887
Q ss_pred -CCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEE
Q 044932 371 -GVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILS 409 (689)
Q Consensus 371 -~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIs 409 (689)
++||+|+|..++ +|. ++..+|.++.|+|||||+|++.
T Consensus 111 ~~~fD~V~~~~~l-~~~-~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 111 KQKIDMITAVECA-HWF-DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp SSCEEEEEEESCG-GGS-CHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCeeEEeHhhHH-HHh-CHHHHHHHHHHhcCCCcEEEEE
Confidence 899999998654 556 8999999999999999999984
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.1e-12 Score=130.34 Aligned_cols=112 Identities=14% Similarity=0.140 Sum_probs=83.7
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHc----CCCcEEecC
Q 044932 291 HYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALER----GFPAVVSPL 361 (689)
Q Consensus 291 ~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eR----GL~~i~~~~ 361 (689)
.|+..+...+..+. ...+|||||||+|.++..|+.. .|+++|+++ .+++.|.++ +....+...
T Consensus 8 ~~~~~~~~~~~~~~---~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~-----~~~~~a~~~~~~~~~~v~~~~~ 79 (284)
T 3gu3_A 8 DYVSFLVNTVWKIT---KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGE-----TLLAEARELFRLLPYDSEFLEG 79 (284)
T ss_dssp HHHHHHHHTTSCCC---SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCH-----HHHHHHHHHHHSSSSEEEEEES
T ss_pred HHHHHHHHHHhccC---CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCH-----HHHHHHHHHHHhcCCceEEEEc
Confidence 34444554443222 4579999999999999888753 589999886 455555543 333445567
Q ss_pred CCCCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 362 GNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 362 dt~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
|...+|++ ++||+|+|..++ ++..++..+|.++.|+|||||+|++.++.
T Consensus 80 d~~~~~~~-~~fD~v~~~~~l-~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 80 DATEIELN-DKYDIAICHAFL-LHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp CTTTCCCS-SCEEEEEEESCG-GGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred chhhcCcC-CCeeEEEECChh-hcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 77788886 799999997654 45678899999999999999999999876
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-12 Score=125.04 Aligned_cols=121 Identities=14% Similarity=0.035 Sum_probs=89.6
Q ss_pred CeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCC------cEEecCCCCCCCCCCCCcceEEeccc
Q 044932 310 RVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFP------AVVSPLGNRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~------~i~~~~dt~~LPFpD~SFDlVhcs~c 381 (689)
.+|||+|||+|.++..|+.. .|+++|+++ .+++.|.++.-. ..+...+...++ ++.+||+|+|..+
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~-----~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~ 141 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPERFVVGLDISE-----SALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVF 141 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTEEEEEECSCH-----HHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESS
T ss_pred CCEEEeCCCCCHHHHHHHhCCCeEEEEECCH-----HHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChh
Confidence 48999999999999998875 488888875 566666665211 345566666766 4579999998765
Q ss_pred cccccc--cHHHHHHHHHhccCCCcEEEEEcCC--------CchhHHHHHHHHHHhcceeEEEeec
Q 044932 382 SITWHA--HGGKLLLEMNRILRPSGYFILSTKH--------DSIEEEEALTTLTASICWNILAHKT 437 (689)
Q Consensus 382 li~W~~--d~~~aL~EI~RVLRPGG~fVIsdp~--------~~le~~~~ie~La~~l~W~~v~~~~ 437 (689)
+.+ .. +...+|.++.|+|||||+|++.... .+....+.+..+++..+|+.+....
T Consensus 142 l~~-~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 206 (235)
T 3lcc_A 142 FCA-IEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEE 206 (235)
T ss_dssp TTT-SCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEE
T ss_pred hhc-CCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEe
Confidence 544 33 6789999999999999999987542 1112345688999999999875543
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-12 Score=138.46 Aligned_cols=121 Identities=17% Similarity=0.101 Sum_probs=90.7
Q ss_pred CCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHc---------C----CCcEEecCCCCCC---
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALER---------G----FPAVVSPLGNRRL--- 366 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eR---------G----L~~i~~~~dt~~L--- 366 (689)
...+|||||||+|.++..|+.. .|+++|+++ .|++.|.++ | ....+...+...+
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~-----~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~ 157 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLD-----NQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATA 157 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCH-----HHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGC
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCH-----HHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhc
Confidence 3578999999999988777542 599999876 466666664 4 2344555666666
Q ss_pred ---CCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCc------h--------------hHHHHHHH
Q 044932 367 ---PFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDS------I--------------EEEEALTT 423 (689)
Q Consensus 367 ---PFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~------l--------------e~~~~ie~ 423 (689)
||++++||+|+|..+ ++|..++..+|.++.|+|||||+|++.+.... . .....+..
T Consensus 158 ~~~~~~~~~fD~V~~~~~-l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (383)
T 4fsd_A 158 EPEGVPDSSVDIVISNCV-CNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRR 236 (383)
T ss_dssp BSCCCCTTCEEEEEEESC-GGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHH
T ss_pred ccCCCCCCCEEEEEEccc-hhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHH
Confidence 999999999998754 45677899999999999999999999863210 0 11256888
Q ss_pred HHHhcceeEEE
Q 044932 424 LTASICWNILA 434 (689)
Q Consensus 424 La~~l~W~~v~ 434 (689)
+++..+|..+.
T Consensus 237 ll~~aGF~~v~ 247 (383)
T 4fsd_A 237 LVAEAGFRDVR 247 (383)
T ss_dssp HHHHTTCCCEE
T ss_pred HHHHCCCceEE
Confidence 99999997653
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-12 Score=123.34 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=82.9
Q ss_pred hHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc----CCCcEEecC
Q 044932 288 GVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER----GFPAVVSPL 361 (689)
Q Consensus 288 ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR----GL~~i~~~~ 361 (689)
....+.+.+.+.++ ...+|||+|||+|.++..|+.. .|+++|+++. +++.|.++ +....+...
T Consensus 24 ~~~~~~~~l~~~~~------~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~~~~~ 92 (227)
T 1ve3_A 24 RIETLEPLLMKYMK------KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISED-----MIRKAREYAKSRESNVEFIVG 92 (227)
T ss_dssp HHHHHHHHHHHSCC------SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHH-----HHHHHHHHHHHTTCCCEEEEC
T ss_pred HHHHHHHHHHHhcC------CCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHH-----HHHHHHHHHHhcCCCceEEEC
Confidence 33444555554433 2468999999999999888765 5899998863 45554443 334455566
Q ss_pred CCCCCCCCCCCcceEEecccccc-ccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 362 GNRRLPFPSGVFDAIHCDGCSIT-WHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 362 dt~~LPFpD~SFDlVhcs~cli~-W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+...+++++++||+|+|..++.. +..+...+|.++.|+|||||+|++.++.
T Consensus 93 d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 93 DARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp CTTSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred chhcCCCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 77788898899999998865222 2346788999999999999999999775
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=8.6e-13 Score=133.26 Aligned_cols=120 Identities=11% Similarity=0.005 Sum_probs=85.0
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcC----------------------CCcEEecCCCC
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERG----------------------FPAVVSPLGNR 364 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRG----------------------L~~i~~~~dt~ 364 (689)
..+|||+|||+|.++.+|+.. .|+|+|+|+ .|++.|.++. ....+.+.|..
T Consensus 69 ~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~-----~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~ 143 (252)
T 2gb4_A 69 GLRVFFPLCGKAIEMKWFADRGHTVVGVEISE-----IGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIF 143 (252)
T ss_dssp SCEEEETTCTTCTHHHHHHHTTCEEEEECSCH-----HHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTT
T ss_pred CCeEEEeCCCCcHHHHHHHHCCCeEEEEECCH-----HHHHHHHHhcccccccccccccccccccccCCCceEEEECccc
Confidence 468999999999999999865 489999876 5677775542 23345567778
Q ss_pred CCCCCC-CCcceEEecccccccc-ccHHHHHHHHHhccCCCcEEEEEc-C--------CCchhHHHHHHHHHHhcceeEE
Q 044932 365 RLPFPS-GVFDAIHCDGCSITWH-AHGGKLLLEMNRILRPSGYFILST-K--------HDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 365 ~LPFpD-~SFDlVhcs~cli~W~-~d~~~aL~EI~RVLRPGG~fVIsd-p--------~~~le~~~~ie~La~~l~W~~v 433 (689)
.+|+++ ++||+|++..++.+.. .+...++.++.|+|||||+|++.+ . +.+....+++..++.. +|+++
T Consensus 144 ~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~ 222 (252)
T 2gb4_A 144 DLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQ 222 (252)
T ss_dssp TGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEE
T ss_pred cCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEE
Confidence 888875 8999999865543322 345679999999999999997542 1 1111223557777776 48765
Q ss_pred E
Q 044932 434 A 434 (689)
Q Consensus 434 ~ 434 (689)
.
T Consensus 223 ~ 223 (252)
T 2gb4_A 223 C 223 (252)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.35 E-value=4.1e-12 Score=122.11 Aligned_cols=96 Identities=14% Similarity=0.098 Sum_probs=72.9
Q ss_pred CCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc----CC------CcEEecCCCCCCCCCCCCcc
Q 044932 309 IRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER----GF------PAVVSPLGNRRLPFPSGVFD 374 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR----GL------~~i~~~~dt~~LPFpD~SFD 374 (689)
..+|||+|||+|.++..|+.. .|+++|+++ .+++.|.++ ++ ...+...+...+++++++||
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~-----~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 104 (217)
T 3jwh_A 30 ARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSY-----RSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYD 104 (217)
T ss_dssp CCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCH-----HHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCS
T ss_pred CCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCH-----HHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcC
Confidence 569999999999999888753 589999876 466666654 33 23444556666777788999
Q ss_pred eEEeccccccccccH--HHHHHHHHhccCCCcEEEEEc
Q 044932 375 AIHCDGCSITWHAHG--GKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 375 lVhcs~cli~W~~d~--~~aL~EI~RVLRPGG~fVIsd 410 (689)
+|+|..++.+ ..++ ..+|.++.|+|||||++++..
T Consensus 105 ~v~~~~~l~~-~~~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 105 AATVIEVIEH-LDLSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp EEEEESCGGG-CCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred EEeeHHHHHc-CCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 9999866544 4544 789999999999999777764
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=6.7e-13 Score=129.95 Aligned_cols=112 Identities=16% Similarity=0.156 Sum_probs=78.6
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHc----CCCcEEecCC
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALER----GFPAVVSPLG 362 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eR----GL~~i~~~~d 362 (689)
..++..+...++ . ...+|||||||+|.++..|+.. .|+++|+++ .|++.|.++ +....+...+
T Consensus 47 ~~~~~~l~~~~~--~---~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~-----~~l~~a~~~~~~~~~~v~~~~~d 116 (236)
T 1zx0_A 47 TPYMHALAAAAS--S---KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECND-----GVFQRLRDWAPRQTHKVIPLKGL 116 (236)
T ss_dssp HHHHHHHHHHHT--T---TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCH-----HHHHHHHHHGGGCSSEEEEEESC
T ss_pred HHHHHHHHhhcC--C---CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCH-----HHHHHHHHHHHhcCCCeEEEecC
Confidence 345555555443 1 3568999999999999988764 488898875 577777664 2333444556
Q ss_pred CCCC--CCCCCCcceEEe-cccc-cc-cc-ccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 363 NRRL--PFPSGVFDAIHC-DGCS-IT-WH-AHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 363 t~~L--PFpD~SFDlVhc-s~cl-i~-W~-~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
...+ ||++++||+|+| ...+ ++ ++ .+...+|.++.|+|||||+|++.+.
T Consensus 117 ~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 117 WEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp HHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred HHHhhcccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 6666 899999999998 4332 11 11 2344779999999999999998753
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.6e-12 Score=121.75 Aligned_cols=98 Identities=16% Similarity=0.190 Sum_probs=73.4
Q ss_pred CCeEEEECCccchhHH-Hhhc--CCeEEEEcCCcccHHHHHHHHHH----cCCCcEEecCCCCCCCCCCCCcceEEeccc
Q 044932 309 IRVVLEIGSADLSFVA-SLLA--KEVLTLTVGLKDDLVDLAQVALE----RGFPAVVSPLGNRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa-~La~--~~V~gmDIsp~D~seamlq~A~e----RGL~~i~~~~dt~~LPFpD~SFDlVhcs~c 381 (689)
..+|||+|||+|.++. .++. ..|+++|+++. |++.|.+ .+....+...+...+|+++++||+|+|..+
T Consensus 24 ~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 98 (209)
T 2p8j_A 24 DKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDL-----QLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGT 98 (209)
T ss_dssp CSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHH-----HHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSC
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHH-----HHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcCh
Confidence 5789999999998743 3433 35899998864 4444443 344444556677789999999999998765
Q ss_pred ccccc-ccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 382 SITWH-AHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 382 li~W~-~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
+.++. .+...+|.++.|+|||||++++.+.
T Consensus 99 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 129 (209)
T 2p8j_A 99 IFHMRKNDVKEAIDEIKRVLKPGGLACINFL 129 (209)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 54432 5678999999999999999999864
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-11 Score=125.51 Aligned_cols=121 Identities=17% Similarity=0.153 Sum_probs=82.9
Q ss_pred cCCCCcccchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHc--
Q 044932 278 FPQNQSEFKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALER-- 352 (689)
Q Consensus 278 Fpgggt~F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eR-- 352 (689)
|+.....+.......++.+...+. +. ...+|||||||+|.++..|+.. .|+++|+++ .+++.|.++
T Consensus 46 ~~~~~~~l~~a~~~~~~~~~~~~~-~~---~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~-----~~~~~a~~~~~ 116 (302)
T 3hem_A 46 FERPDMTLEEAQYAKRKLALDKLN-LE---PGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSE-----NQYAHDKAMFD 116 (302)
T ss_dssp CSSTTCCHHHHHHHHHHHHHHTTC-CC---TTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCH-----HHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHHHHcC-CC---CcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCH-----HHHHHHHHHHH
Confidence 444333444444555555655543 22 4579999999999998887754 589999886 455555543
Q ss_pred --CCC--cEEecCCCCCCCCCCCCcceEEeccccccccccH---------HHHHHHHHhccCCCcEEEEEcC
Q 044932 353 --GFP--AVVSPLGNRRLPFPSGVFDAIHCDGCSITWHAHG---------GKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 353 --GL~--~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~~d~---------~~aL~EI~RVLRPGG~fVIsdp 411 (689)
|+. ..+...+...+ +++||+|+|..++.+ ..++ ..+|.++.|+|||||+|++.+.
T Consensus 117 ~~~~~~~v~~~~~d~~~~---~~~fD~v~~~~~~~~-~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 117 EVDSPRRKEVRIQGWEEF---DEPVDRIVSLGAFEH-FADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp HSCCSSCEEEEECCGGGC---CCCCSEEEEESCGGG-TTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred hcCCCCceEEEECCHHHc---CCCccEEEEcchHHh-cCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 554 33445555544 699999999865544 4333 6899999999999999999864
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.2e-12 Score=125.16 Aligned_cols=124 Identities=12% Similarity=0.084 Sum_probs=87.3
Q ss_pred CCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcC--CC---------------------------
Q 044932 308 NIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERG--FP--------------------------- 355 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRG--L~--------------------------- 355 (689)
...+|||+|||+|.++..++.. .|+++|+++ .|++.|.++. ..
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~-----~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESFTEIIVSDYTD-----QNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEE 130 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCH-----HHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhcccCeEEEecCCH-----HHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHH
Confidence 3568999999999988877754 588999876 4566655431 11
Q ss_pred -----c-EEecCCCCCC-CCCC---CCcceEEecccccc---ccccHHHHHHHHHhccCCCcEEEEEcCCC---------
Q 044932 356 -----A-VVSPLGNRRL-PFPS---GVFDAIHCDGCSIT---WHAHGGKLLLEMNRILRPSGYFILSTKHD--------- 413 (689)
Q Consensus 356 -----~-i~~~~dt~~L-PFpD---~SFDlVhcs~cli~---W~~d~~~aL~EI~RVLRPGG~fVIsdp~~--------- 413 (689)
. .+...+...+ |+++ ++||+|+|..++.+ +..+...+|.++.|+|||||+|++.+...
T Consensus 131 ~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~ 210 (265)
T 2i62_A 131 KLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQ 210 (265)
T ss_dssp HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTE
T ss_pred HhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCc
Confidence 2 3445555544 4466 89999999876542 23467899999999999999999986321
Q ss_pred ----chhHHHHHHHHHHhcceeEEEee
Q 044932 414 ----SIEEEEALTTLTASICWNILAHK 436 (689)
Q Consensus 414 ----~le~~~~ie~La~~l~W~~v~~~ 436 (689)
.....+.+..++...+|+.+...
T Consensus 211 ~~~~~~~~~~~~~~~l~~aGf~~~~~~ 237 (265)
T 2i62_A 211 KFSSLPLGWETVRDAVEEAGYTIEQFE 237 (265)
T ss_dssp EEECCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred cccccccCHHHHHHHHHHCCCEEEEEE
Confidence 11123468889999999886554
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-12 Score=129.52 Aligned_cols=110 Identities=15% Similarity=0.123 Sum_probs=76.0
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHc----CCCcEEecCCC
Q 044932 291 HYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALER----GFPAVVSPLGN 363 (689)
Q Consensus 291 ~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eR----GL~~i~~~~dt 363 (689)
.|.+.+.+.++. .+.+|||||||+|.++.+++.. .|+++|++| .|++.|+++ +....+...+.
T Consensus 48 ~~m~~~a~~~~~-----~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~-----~~~~~a~~~~~~~~~~~~~~~~~a 117 (236)
T 3orh_A 48 PYMHALAAAASS-----KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECND-----GVFQRLRDWAPRQTHKVIPLKGLW 117 (236)
T ss_dssp HHHHHHHHHHTT-----TCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCH-----HHHHHHHHHGGGCSSEEEEEESCH
T ss_pred HHHHHHHHhhcc-----CCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCH-----HHHHHHHHHHhhCCCceEEEeehH
Confidence 444555555431 3578999999999999888865 488999876 466666654 33333433333
Q ss_pred C--CCCCCCCCcceEEec----cccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 364 R--RLPFPSGVFDAIHCD----GCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 364 ~--~LPFpD~SFDlVhcs----~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
+ ..++++++||.|++- ........+...+|.|+.|||||||+|++..
T Consensus 118 ~~~~~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 118 EDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp HHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred HhhcccccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 2 336889999999742 1112223467899999999999999999864
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.2e-12 Score=126.02 Aligned_cols=123 Identities=12% Similarity=0.081 Sum_probs=84.5
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecccccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWH 386 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~ 386 (689)
..+|||+|||+|.++..|+.. .|+++|+++... ..+.+.+...++...+...+...+++ +++||+|+|..++.+..
T Consensus 121 ~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~-~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~ 198 (286)
T 3m70_A 121 PCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSI-AFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMFLN 198 (286)
T ss_dssp SCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHH-HHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGGSC
T ss_pred CCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHH-HHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchhhCC
Confidence 468999999999999888865 589999886422 11222233346655666677777777 79999999986554322
Q ss_pred -ccHHHHHHHHHhccCCCcEEEEEcCC-----------CchhHHHHHHHHHHhcceeEEEe
Q 044932 387 -AHGGKLLLEMNRILRPSGYFILSTKH-----------DSIEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 387 -~d~~~aL~EI~RVLRPGG~fVIsdp~-----------~~le~~~~ie~La~~l~W~~v~~ 435 (689)
++...+|.++.|+|||||++++.... ........+..+... |+.+..
T Consensus 199 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ 257 (286)
T 3m70_A 199 RERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEY 257 (286)
T ss_dssp GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEE
Confidence 33458999999999999998876421 111122346677665 777654
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.8e-12 Score=128.70 Aligned_cols=98 Identities=19% Similarity=0.197 Sum_probs=77.4
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHH----cCCC-cEEecCCCCCCCCCCCCcceEEe
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALE----RGFP-AVVSPLGNRRLPFPSGVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~e----RGL~-~i~~~~dt~~LPFpD~SFDlVhc 378 (689)
...+|||||||+|.++..|+.. .|+++|+++. +++.|.+ .+++ ..+...+...+|+++++||+|+|
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 111 (276)
T 3mgg_A 37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPE-----SLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFV 111 (276)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHH-----HHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHH-----HHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEE
Confidence 4579999999999998887743 5899998863 4555444 3554 34556677889999999999998
Q ss_pred ccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 379 DGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
..++ ++..++..+|.++.|+|||||+|++.++
T Consensus 112 ~~~l-~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (276)
T 3mgg_A 112 CFVL-EHLQSPEEALKSLKKVLKPGGTITVIEG 143 (276)
T ss_dssp ESCG-GGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred echh-hhcCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence 7654 4567888999999999999999999864
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.32 E-value=4.3e-12 Score=127.85 Aligned_cols=122 Identities=17% Similarity=0.114 Sum_probs=82.4
Q ss_pred CCCeEEEECCccchhHHHhh---cCCeEEEEcCCcccHHHHHHHHHHc---------------------CCC--------
Q 044932 308 NIRVVLEIGSADLSFVASLL---AKEVLTLTVGLKDDLVDLAQVALER---------------------GFP-------- 355 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La---~~~V~gmDIsp~D~seamlq~A~eR---------------------GL~-------- 355 (689)
...+|||||||+|.++..++ ...|+++|+++ .|++.|.++ |..
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~-----~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 145 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLE-----VNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKER 145 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCH-----HHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCH-----HHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHH
Confidence 35789999999998554333 23699999876 456555542 100
Q ss_pred ------cEEecCCCCC-CCC-----CCCCcceEEeccccccc----cccHHHHHHHHHhccCCCcEEEEEcCC-------
Q 044932 356 ------AVVSPLGNRR-LPF-----PSGVFDAIHCDGCSITW----HAHGGKLLLEMNRILRPSGYFILSTKH------- 412 (689)
Q Consensus 356 ------~i~~~~dt~~-LPF-----pD~SFDlVhcs~cli~W----~~d~~~aL~EI~RVLRPGG~fVIsdp~------- 412 (689)
..+...|... +|| ++++||+|+|..++ +| ..++..+|.++.|+|||||+|++....
T Consensus 146 ~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l-~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~ 224 (289)
T 2g72_A 146 QLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCL-EAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLA 224 (289)
T ss_dssp HHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCH-HHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEE
T ss_pred HHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhh-hhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEc
Confidence 1122335555 664 45679999998654 55 446789999999999999999997421
Q ss_pred ------CchhHHHHHHHHHHhcceeEEEe
Q 044932 413 ------DSIEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 413 ------~~le~~~~ie~La~~l~W~~v~~ 435 (689)
......+.+..+++..+|+.+..
T Consensus 225 ~~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 253 (289)
T 2g72_A 225 GEARLTVVPVSEEEVREALVRSGYKVRDL 253 (289)
T ss_dssp TTEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred CCeeeeeccCCHHHHHHHHHHcCCeEEEe
Confidence 01113456888999999987654
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.8e-11 Score=113.32 Aligned_cols=122 Identities=11% Similarity=0.034 Sum_probs=77.7
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH----cCCCc-EEecCCCCCCC-CCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE----RGFPA-VVSPLGNRRLP-FPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e----RGL~~-i~~~~dt~~LP-FpD~SFDlVhcs 379 (689)
...+|||+|||+|.++..|+.. .|+++|+++. |++.|.+ .++.. .+...+...++ +++++||+|++.
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~-----~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~ 96 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQ-----ALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFN 96 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHH-----HHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHH-----HHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEe
Confidence 3578999999999999988865 5999999864 5555544 35532 23333444443 567899999876
Q ss_pred cccccc--------cccHHHHHHHHHhccCCCcEEEEEcCCCc---hhHHHHHHHHHHhcc---eeEEE
Q 044932 380 GCSITW--------HAHGGKLLLEMNRILRPSGYFILSTKHDS---IEEEEALTTLTASIC---WNILA 434 (689)
Q Consensus 380 ~cli~W--------~~d~~~aL~EI~RVLRPGG~fVIsdp~~~---le~~~~ie~La~~l~---W~~v~ 434 (689)
...++. ..+...+|.++.|+|||||+|++...... ......+..++..+. |....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (185)
T 3mti_A 97 LGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAML 165 (185)
T ss_dssp EC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEE
T ss_pred CCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEE
Confidence 333332 12345789999999999999999865321 222334555555544 55543
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.4e-12 Score=122.48 Aligned_cols=112 Identities=18% Similarity=0.212 Sum_probs=85.2
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCC-CCCCCC-CCCcceEEecccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGN-RRLPFP-SGVFDAIHCDGCSIT 384 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt-~~LPFp-D~SFDlVhcs~cli~ 384 (689)
..+|||+|||+|.++..|+.. .|+++|+++ .|++.|.++.....+...+. ..+||+ +++||+|+|..
T Consensus 49 ~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~---- 119 (226)
T 3m33_A 49 QTRVLEAGCGHGPDAARFGPQAARWAAYDFSP-----ELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR---- 119 (226)
T ss_dssp TCEEEEESCTTSHHHHHHGGGSSEEEEEESCH-----HHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES----
T ss_pred CCeEEEeCCCCCHHHHHHHHcCCEEEEEECCH-----HHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC----
Confidence 578999999999999888865 588999875 57888887744445555665 678998 99999999862
Q ss_pred ccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEe
Q 044932 385 WHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 385 W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~ 435 (689)
++..+|.++.|+|||||+|+........ ..+..++...+|..+..
T Consensus 120 ---~~~~~l~~~~~~LkpgG~l~~~~~~~~~---~~~~~~l~~~Gf~~~~~ 164 (226)
T 3m33_A 120 ---GPTSVILRLPELAAPDAHFLYVGPRLNV---PEVPERLAAVGWDIVAE 164 (226)
T ss_dssp ---CCSGGGGGHHHHEEEEEEEEEEESSSCC---THHHHHHHHTTCEEEEE
T ss_pred ---CHHHHHHHHHHHcCCCcEEEEeCCcCCH---HHHHHHHHHCCCeEEEE
Confidence 3457899999999999999943322222 23677888888887654
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.30 E-value=7.5e-12 Score=122.45 Aligned_cols=99 Identities=22% Similarity=0.271 Sum_probs=75.1
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH----cCCCcEEecCCCCCCCCCCCCcceEEeccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE----RGFPAVVSPLGNRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e----RGL~~i~~~~dt~~LPFpD~SFDlVhcs~c 381 (689)
...+|||+|||+|.++..|+.. .|+++|+++. |++.|.+ .++...+...+...++++ ++||+|+|..+
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~-----~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~ 114 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEE-----MLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFS 114 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHH-----HHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSS
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHH-----HHHHHHHHHHhcCCceEEEECChhhcccC-CCccEEEEcCC
Confidence 3579999999999999888765 5899998864 5555443 355555666677778876 78999998654
Q ss_pred ccccc--ccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 382 SITWH--AHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 382 li~W~--~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
.+++. .+...+|.++.|+|+|||+|++..+.
T Consensus 115 ~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 115 TIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp GGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred chhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 44432 35678999999999999999987664
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=5.9e-12 Score=125.32 Aligned_cols=99 Identities=17% Similarity=0.135 Sum_probs=75.2
Q ss_pred CCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHc----CCC--cEEecCCCCCCCC-CCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALER----GFP--AVVSPLGNRRLPF-PSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eR----GL~--~i~~~~dt~~LPF-pD~SFDlVh 377 (689)
...+|||+|||+|.++..++.. .|+++|+++ .+++.|.++ ++. ..+...+...+|+ ++++||+|+
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~-----~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~ 138 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAE-----VSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVIS 138 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCH-----HHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCH-----HHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEE
Confidence 3578999999999988777643 589999886 455555554 331 3445667777888 689999999
Q ss_pred eccccccc----cccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 378 CDGCSITW----HAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 378 cs~cli~W----~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
|..++ ++ ..+...+|.++.|+|||||+|++..+.
T Consensus 139 ~~~~l-~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 139 SQFSF-HYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp EESCG-GGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ECchh-hhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 87654 33 346678999999999999999998754
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.30 E-value=3.1e-11 Score=111.73 Aligned_cols=99 Identities=10% Similarity=0.064 Sum_probs=72.5
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH----cCCC---cEEecCCCCCCCCCCCCcceEEe
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE----RGFP---AVVSPLGNRRLPFPSGVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e----RGL~---~i~~~~dt~~LPFpD~SFDlVhc 378 (689)
...+|||+|||+|.++..++.. .|+++|+++. +++.|.+ .++. ..+...+... ++++++||+|++
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~ 125 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADEVKSTTMADINRR-----AIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIIT 125 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHH-----HHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHH-----HHHHHHHHHHHcCCCccceEEEECchhc-ccccCCceEEEE
Confidence 3578999999999998888754 5899998864 4444443 3555 3444455433 456789999998
Q ss_pred ccccccc-cccHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 379 DGCSITW-HAHGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 379 s~cli~W-~~d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
...+ ++ ..+...+|.++.|+|+|||++++..+..
T Consensus 126 ~~~~-~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 126 NPPI-RAGKEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp CCCS-TTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred CCCc-ccchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 6533 33 2456789999999999999999998764
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.9e-11 Score=126.01 Aligned_cols=135 Identities=16% Similarity=0.125 Sum_probs=87.8
Q ss_pred CCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCCCcEE-ecCCCCCCC---CCCCCcceEEecc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGFPAVV-SPLGNRRLP---FPSGVFDAIHCDG 380 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL~~i~-~~~dt~~LP---FpD~SFDlVhcs~ 380 (689)
...+|||+|||||.|+..|+.. .|+++|+++. |++.++++...... ...+...++ ++..+||+|+|..
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~-----mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~ 159 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTN-----QLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDV 159 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSS-----CSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECC
T ss_pred cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHH-----HHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEe
Confidence 3579999999999999888754 4999999985 44444443222211 111222222 3445799999865
Q ss_pred ccccccccHHHHHHHHHhccCCCcEEEEEcCCC------------c-------hhHHHHHHHHHHhcceeEEEeeccc--
Q 044932 381 CSITWHAHGGKLLLEMNRILRPSGYFILSTKHD------------S-------IEEEEALTTLTASICWNILAHKTDE-- 439 (689)
Q Consensus 381 cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~------------~-------le~~~~ie~La~~l~W~~v~~~~~~-- 439 (689)
.++ +...+|.|+.|+|||||+|++...|. . ....+.+..++...+|.......-.
T Consensus 160 sf~----sl~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi~ 235 (291)
T 3hp7_A 160 SFI----SLNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPIQ 235 (291)
T ss_dssp SSS----CGGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSSC
T ss_pred eHh----hHHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC
Confidence 443 24689999999999999999984321 1 0123567788889999886543322
Q ss_pred ---cCceeEEEEEeC
Q 044932 440 ---ISEMGVKIYQKP 451 (689)
Q Consensus 440 ---~g~~~i~IwqKp 451 (689)
++.++++.++|.
T Consensus 236 g~~gn~e~l~~~~~~ 250 (291)
T 3hp7_A 236 GGHGNIEFLAHLEKT 250 (291)
T ss_dssp CGGGCCCEEEEEEEC
T ss_pred CCCcCHHHHHHhhhc
Confidence 244566666653
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-11 Score=120.65 Aligned_cols=133 Identities=10% Similarity=0.017 Sum_probs=91.3
Q ss_pred CCeEEEECCccchhHHHhh--c--CCeEEEEcCCcccHHHHHHHHHH----cCCC-cEEecCCCCCCCCC---CCCcceE
Q 044932 309 IRVVLEIGSADLSFVASLL--A--KEVLTLTVGLKDDLVDLAQVALE----RGFP-AVVSPLGNRRLPFP---SGVFDAI 376 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La--~--~~V~gmDIsp~D~seamlq~A~e----RGL~-~i~~~~dt~~LPFp---D~SFDlV 376 (689)
..+|||||||+|.++..|+ . ..|+++|+++. |++.|.+ .++. ..+...+...++++ +++||+|
T Consensus 71 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V 145 (240)
T 1xdz_A 71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNK-----RITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIV 145 (240)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHH-----HHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHH-----HHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEE
Confidence 4689999999999887776 2 35999998864 4444443 3664 34445565666664 6899999
Q ss_pred EeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccc----cCceeEEEEEeC
Q 044932 377 HCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDE----ISEMGVKIYQKP 451 (689)
Q Consensus 377 hcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~----~g~~~i~IwqKp 451 (689)
+|.. ..+...++.++.|+|||||+|++............+...++..+|......... .+.-++.+++|.
T Consensus 146 ~~~~-----~~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~k~ 219 (240)
T 1xdz_A 146 TARA-----VARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKI 219 (240)
T ss_dssp EEEC-----CSCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred EEec-----cCCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEEEEec
Confidence 9854 236779999999999999999998654444444556677888899875443211 123456666664
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.3e-12 Score=132.21 Aligned_cols=98 Identities=14% Similarity=0.101 Sum_probs=69.1
Q ss_pred CCeEEEECCccchhHHHhhc---CCeEEEEcCCcccHHHHHHHHHHc----CCC-------cEEecCCC------CCC--
Q 044932 309 IRVVLEIGSADLSFVASLLA---KEVLTLTVGLKDDLVDLAQVALER----GFP-------AVVSPLGN------RRL-- 366 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~---~~V~gmDIsp~D~seamlq~A~eR----GL~-------~i~~~~dt------~~L-- 366 (689)
..+|||||||+|..+..++. ..|+|+|+|+ .|++.|+++ ++. ..+.+.+. ..|
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~-----~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~ 123 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFYGEIALLVATDPDA-----DAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVRE 123 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHHTTCSEEEEEESCH-----HHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHT
T ss_pred CCeEEEEecCCcHhHHHHHhcCCCeEEEEECCH-----HHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhc
Confidence 57899999999975544432 2599999986 466666554 322 12322222 222
Q ss_pred CCCCCCcceEEecccccccc---ccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 367 PFPSGVFDAIHCDGCSITWH---AHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 367 PFpD~SFDlVhcs~cli~W~---~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
++++++||+|+|..++ ||. .+...+|.++.|+|||||+|+++++.
T Consensus 124 ~~~~~~FD~V~~~~~l-hy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 124 VFYFGKFNIIDWQFAI-HYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp TCCSSCEEEEEEESCG-GGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cccCCCeeEEEECchH-HHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 5788999999998654 432 35679999999999999999999876
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-11 Score=116.18 Aligned_cols=130 Identities=15% Similarity=0.068 Sum_probs=89.3
Q ss_pred CCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHH----cCCC-cEEecCCCCCCCCCCCCcceEEecc
Q 044932 309 IRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALE----RGFP-AVVSPLGNRRLPFPSGVFDAIHCDG 380 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~e----RGL~-~i~~~~dt~~LPFpD~SFDlVhcs~ 380 (689)
..+|||+|||+|.++..|+.. .|+++|+++. +++.|.+ .++. ..+...+. +++.+++||+|+|..
T Consensus 61 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~v~~~~~d~--~~~~~~~fD~i~~~~ 133 (205)
T 3grz_A 61 PLTVADVGTGSGILAIAAHKLGAKSVLATDISDE-----SMTAAEENAALNGIYDIALQKTSL--LADVDGKFDLIVANI 133 (205)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHH-----HHHHHHHHHHHTTCCCCEEEESST--TTTCCSCEEEEEEES
T ss_pred CCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHH-----HHHHHHHHHHHcCCCceEEEeccc--cccCCCCceEEEECC
Confidence 568999999999998888764 5899998863 5555544 3554 34444444 335578999999864
Q ss_pred ccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccccCceeEEEEEeCCC
Q 044932 381 CSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEISEMGVKIYQKPES 453 (689)
Q Consensus 381 cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqKp~~ 453 (689)
.. + ....+|.++.|+|||||++++.+.... ....+..++...+|+.+..... +.-..++.++|.+
T Consensus 134 ~~-~---~~~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~~~~~Gf~~~~~~~~--~~w~~~~~~~~~~ 198 (205)
T 3grz_A 134 LA-E---ILLDLIPQLDSHLNEDGQVIFSGIDYL--QLPKIEQALAENSFQIDLKMRA--GRWIGLAISRKHE 198 (205)
T ss_dssp CH-H---HHHHHGGGSGGGEEEEEEEEEEEEEGG--GHHHHHHHHHHTTEEEEEEEEE--TTEEEEEEEECC-
T ss_pred cH-H---HHHHHHHHHHHhcCCCCEEEEEecCcc--cHHHHHHHHHHcCCceEEeecc--CCEEEEEEecccc
Confidence 33 2 245889999999999999999864422 2345778888999988765432 3344455555443
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.28 E-value=7.4e-12 Score=124.17 Aligned_cols=93 Identities=23% Similarity=0.287 Sum_probs=75.4
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
...+|||+|||+|.++..++.. .|+++|+++ .+++.|.+++....+...+...+|+++++||+|+|...
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-- 157 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSK-----VAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA-- 157 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCH-----HHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESC--
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCH-----HHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCC--
Confidence 3568999999999998887754 588998875 57888888765555666677889999999999998643
Q ss_pred cccccHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 384 TWHAHGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 384 ~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
. .+|.++.|+|||||+|++.++..
T Consensus 158 ~------~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 158 P------CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp C------CCHHHHHHHEEEEEEEEEEEECT
T ss_pred h------hhHHHHHHhcCCCcEEEEEEcCH
Confidence 1 46899999999999999998753
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=3e-11 Score=123.02 Aligned_cols=116 Identities=10% Similarity=0.047 Sum_probs=81.6
Q ss_pred cchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhc---CCeEEEEcCCcccHHHHHHHHHHc----CCC--
Q 044932 285 FKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA---KEVLTLTVGLKDDLVDLAQVALER----GFP-- 355 (689)
Q Consensus 285 F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~---~~V~gmDIsp~D~seamlq~A~eR----GL~-- 355 (689)
+.......++.+.+.++ +. ...+|||||||+|.++..|+. ..|+++|+++ .+++.|.++ |+.
T Consensus 71 l~~~~~~~~~~~~~~~~-~~---~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~-----~~~~~a~~~~~~~~~~~~ 141 (318)
T 2fk8_A 71 LEEAQYAKVDLNLDKLD-LK---PGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSK-----NQHARCEQVLASIDTNRS 141 (318)
T ss_dssp HHHHHHHHHHHHHTTSC-CC---TTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCH-----HHHHHHHHHHHTSCCSSC
T ss_pred HHHHHHHHHHHHHHhcC-CC---CcCEEEEEcccchHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHHhcCCCCc
Confidence 33334445555555543 22 356899999999999887774 3689999876 466666554 443
Q ss_pred cEEecCCCCCCCCCCCCcceEEecccccccc-ccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 356 AVVSPLGNRRLPFPSGVFDAIHCDGCSITWH-AHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 356 ~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~-~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
..+...+...+| ++||+|+|..++.+.. .+...+|.++.|+|||||+|++.++.
T Consensus 142 v~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 196 (318)
T 2fk8_A 142 RQVLLQGWEDFA---EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV 196 (318)
T ss_dssp EEEEESCGGGCC---CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred eEEEECChHHCC---CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 334455555554 7999999986654432 57789999999999999999998764
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-11 Score=123.86 Aligned_cols=130 Identities=17% Similarity=0.097 Sum_probs=83.1
Q ss_pred CCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCCCcEE------ecCCCCCC---CCCCCCcce
Q 044932 308 NIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGFPAVV------SPLGNRRL---PFPSGVFDA 375 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL~~i~------~~~dt~~L---PFpD~SFDl 375 (689)
...+|||||||||.++..|+.. .|+++|+++. |++.|+++...... .......+ +|++.+||+
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~-----ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~ 111 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTN-----QLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDV 111 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCC-----CCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECC
T ss_pred CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHH-----HHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEE
Confidence 3568999999999999888764 5899999986 44455554322111 01111122 234456666
Q ss_pred EEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCC-------------------chhHHHHHHHHHHhcceeEEEee
Q 044932 376 IHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHD-------------------SIEEEEALTTLTASICWNILAHK 436 (689)
Q Consensus 376 Vhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~-------------------~le~~~~ie~La~~l~W~~v~~~ 436 (689)
++++. ..+|.++.|+|||||+|++...+. .....+.+..+++..+|.+....
T Consensus 112 v~~~l---------~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~ 182 (232)
T 3opn_A 112 SFISL---------DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLT 182 (232)
T ss_dssp SSSCG---------GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred EhhhH---------HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEE
Confidence 54431 479999999999999999973210 01123568888999999987654
Q ss_pred cccc-----CceeEEEEEeC
Q 044932 437 TDEI-----SEMGVKIYQKP 451 (689)
Q Consensus 437 ~~~~-----g~~~i~IwqKp 451 (689)
..+. +..+++.++|.
T Consensus 183 ~~pi~g~~gn~e~l~~~~~~ 202 (232)
T 3opn_A 183 FSPIKGGAGNVEFLVHLLKD 202 (232)
T ss_dssp ECSSCBTTTBCCEEEEEEES
T ss_pred EccCCCCCCCHHHHHHHhhc
Confidence 4322 34567777774
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.24 E-value=9.5e-11 Score=113.35 Aligned_cols=140 Identities=17% Similarity=0.055 Sum_probs=92.0
Q ss_pred CCCeEEEECCc-cchhHHHhhc---CCeEEEEcCCcccHHHHHHHHHH----cCCCcEEecCCCC-CCCCCCCCcceEEe
Q 044932 308 NIRVVLEIGSA-DLSFVASLLA---KEVLTLTVGLKDDLVDLAQVALE----RGFPAVVSPLGNR-RLPFPSGVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCG-tGsfaa~La~---~~V~gmDIsp~D~seamlq~A~e----RGL~~i~~~~dt~-~LPFpD~SFDlVhc 378 (689)
...+|||+||| +|.++..++. ..|+++|+++. +++.|.+ .++...+...+.. -.++++++||+|+|
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~ 129 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEE-----FFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFS 129 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHH-----HHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEE
T ss_pred CCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHH-----HHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEE
Confidence 35789999999 9998877764 35999999874 4444443 4554455555543 33577899999998
Q ss_pred cccccccc------------------ccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeecccc
Q 044932 379 DGCSITWH------------------AHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEI 440 (689)
Q Consensus 379 s~cli~W~------------------~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~ 440 (689)
....++.. .....+|.++.|+|||||+|++..+... .....+.++++..+|..........
T Consensus 130 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~l~~~g~~~~~~~~~~g 208 (230)
T 3evz_A 130 APPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE-KLLNVIKERGIKLGYSVKDIKFKVG 208 (230)
T ss_dssp CCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH-HHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred CCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH-hHHHHHHHHHHHcCCceEEEEecCC
Confidence 63221100 0126789999999999999999876532 2234577788888997654433222
Q ss_pred -CceeEEEEEeCCC
Q 044932 441 -SEMGVKIYQKPES 453 (689)
Q Consensus 441 -g~~~i~IwqKp~~ 453 (689)
....+++|+|...
T Consensus 209 ~~~~~~l~f~~~~~ 222 (230)
T 3evz_A 209 TRWRHSLIFFKGIS 222 (230)
T ss_dssp C-CEEEEEEECCC-
T ss_pred CeEEEEEEEecccc
Confidence 2344777877543
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-11 Score=119.62 Aligned_cols=98 Identities=17% Similarity=0.102 Sum_probs=68.2
Q ss_pred CCCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCC----CCCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRR----LPFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~----LPFpD~SFDlVhcs 379 (689)
...+|||+|||+|.++..|+. ..|+|+|+++... ..+++.|..+. .......+... +|++ ++||+|+|.
T Consensus 57 ~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l-~~~~~~a~~~~-~v~~~~~d~~~~~~~~~~~-~~fD~V~~~ 133 (210)
T 1nt2_A 57 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPF-EKLLELVRERN-NIIPLLFDASKPWKYSGIV-EKVDLIYQD 133 (210)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHH-HHHHHHHHHCS-SEEEECSCTTCGGGTTTTC-CCEEEEEEC
T ss_pred CCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHH-HHHHHHHhcCC-CeEEEEcCCCCchhhcccc-cceeEEEEe
Confidence 356899999999998877664 3599999988532 34556665542 22333344444 3566 899999986
Q ss_pred cccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 380 GCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 380 ~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
. ........+|.++.|+|||||+|++..+
T Consensus 134 ~---~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 162 (210)
T 1nt2_A 134 I---AQKNQIEILKANAEFFLKEKGEVVIMVK 162 (210)
T ss_dssp C---CSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c---cChhHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 2 2122344569999999999999999853
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.7e-11 Score=111.25 Aligned_cols=128 Identities=12% Similarity=0.129 Sum_probs=87.6
Q ss_pred CCeEEEECCccchhHHHhhcC-CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK-EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWHA 387 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~-~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~~ 387 (689)
..+|||+|||+|.++..|+.. .|+++|+++ .|++. ..++. +...+... ++++++||+|+|..... |..
T Consensus 24 ~~~vLD~GcG~G~~~~~l~~~~~v~gvD~s~-----~~~~~--~~~~~--~~~~d~~~-~~~~~~fD~i~~n~~~~-~~~ 92 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLRKRNTVVSTDLNI-----RALES--HRGGN--LVRADLLC-SINQESVDVVVFNPPYV-PDT 92 (170)
T ss_dssp SCEEEEETCTTCHHHHHHTTTSEEEEEESCH-----HHHHT--CSSSC--EEECSTTT-TBCGGGCSEEEECCCCB-TTC
T ss_pred CCeEEEeccCccHHHHHHHhcCcEEEEECCH-----HHHhc--ccCCe--EEECChhh-hcccCCCCEEEECCCCc-cCC
Confidence 458999999999999998876 688999876 45554 22232 33445444 67789999999864432 222
Q ss_pred ---------cHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccccCceeEEEEEe
Q 044932 388 ---------HGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEISEMGVKIYQK 450 (689)
Q Consensus 388 ---------d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqK 450 (689)
+...++.++.+.| |||++++...... ....+.++++..+|..........+...+.+++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~--~~~~l~~~l~~~gf~~~~~~~~~~~~e~~~~~~~ 161 (170)
T 3q87_B 93 DDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEAN--RPKEVLARLEERGYGTRILKVRKILGETVYIIKG 161 (170)
T ss_dssp CCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGG--CHHHHHHHHHHTTCEEEEEEEEECSSSEEEEEEE
T ss_pred ccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCC--CHHHHHHHHHHCCCcEEEEEeeccCCceEEEEEE
Confidence 2357899999999 9999999875422 2235778888999987655554444444444443
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.8e-11 Score=112.22 Aligned_cols=139 Identities=10% Similarity=0.022 Sum_probs=88.8
Q ss_pred CCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHH----cCC--CcEEecCCCCCCC-CCCCCcceE
Q 044932 309 IRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALE----RGF--PAVVSPLGNRRLP-FPSGVFDAI 376 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~e----RGL--~~i~~~~dt~~LP-FpD~SFDlV 376 (689)
..+|||+|||+|.++..++.. .|+++|+++. +++.|.+ .|+ ...+...+...++ +.+++||+|
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v 97 (197)
T 3eey_A 23 GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDK-----AIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAV 97 (197)
T ss_dssp TCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHH-----HHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEE
T ss_pred CCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHH-----HHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEE
Confidence 468999999999988877653 5899998864 4444443 354 2345556666665 667999999
Q ss_pred Eeccccccc--------cccHHHHHHHHHhccCCCcEEEEEcCCC---chhHHHHHHHHHHhc---ceeEEEeeccc--c
Q 044932 377 HCDGCSITW--------HAHGGKLLLEMNRILRPSGYFILSTKHD---SIEEEEALTTLTASI---CWNILAHKTDE--I 440 (689)
Q Consensus 377 hcs~cli~W--------~~d~~~aL~EI~RVLRPGG~fVIsdp~~---~le~~~~ie~La~~l---~W~~v~~~~~~--~ 440 (689)
++....++. ..+...+|.++.|+|||||++++..... .......+..++..+ +|.......-. .
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~ 177 (197)
T 3eey_A 98 MFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQAN 177 (197)
T ss_dssp EEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETTCCS
T ss_pred EEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEeccCcc
Confidence 986433221 1134579999999999999999986432 222334455555544 47665443321 2
Q ss_pred CceeEEEEEeCC
Q 044932 441 SEMGVKIYQKPE 452 (689)
Q Consensus 441 g~~~i~IwqKp~ 452 (689)
....+.+-+|..
T Consensus 178 ~pp~~~~~~~~~ 189 (197)
T 3eey_A 178 CPPILVCIEKIS 189 (197)
T ss_dssp CCCEEEEEEECC
T ss_pred CCCeEEEEEEcc
Confidence 234566666643
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.23 E-value=8.6e-11 Score=116.37 Aligned_cols=101 Identities=15% Similarity=0.067 Sum_probs=70.4
Q ss_pred CCCeEEEECCccchhHHHhhc-----CCeEEEEcCCc------ccHHHHHHHHHHcCCC--cEEecCC---CCCCCCCCC
Q 044932 308 NIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLK------DDLVDLAQVALERGFP--AVVSPLG---NRRLPFPSG 371 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~------D~seamlq~A~eRGL~--~i~~~~d---t~~LPFpD~ 371 (689)
...+|||||||+|.++..|+. ..|+++|+++. .. ..+.+.+...++. ..+...+ ...+||+++
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 121 (275)
T 3bkx_A 43 PGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTL-GQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQ 121 (275)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCH-HHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTC
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHH-HHHHHHHHhcCCCCceEEEECChhhhccCCCCCC
Confidence 457999999999999887764 35899999874 22 1222222233442 3344455 567789999
Q ss_pred CcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 372 VFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 372 SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
+||+|+|..++. +..++..++..+.++++|||++++.+
T Consensus 122 ~fD~v~~~~~l~-~~~~~~~~~~~~~~l~~~gG~l~~~~ 159 (275)
T 3bkx_A 122 HFDRVVLAHSLW-YFASANALALLFKNMAAVCDHVDVAE 159 (275)
T ss_dssp CCSEEEEESCGG-GSSCHHHHHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEEEccchh-hCCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 999999886654 45667776666777777799999975
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.22 E-value=6.7e-11 Score=114.13 Aligned_cols=119 Identities=18% Similarity=0.222 Sum_probs=83.8
Q ss_pred CCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHH----cCCC-cEEecCCCCCCC--CCCCCcceEE
Q 044932 309 IRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALE----RGFP-AVVSPLGNRRLP--FPSGVFDAIH 377 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~e----RGL~-~i~~~~dt~~LP--FpD~SFDlVh 377 (689)
..+|||+|||+|.++..|+. ..|+++|+++. +++.|.+ .++. ..+...+...++ |++++||+|+
T Consensus 42 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~-----~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~ 116 (214)
T 1yzh_A 42 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKS-----VLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLY 116 (214)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHH-----HHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEE
T ss_pred CCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHH-----HHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEE
Confidence 46899999999999887764 35999999874 4444433 3554 334456666677 8889999999
Q ss_pred eccccccccc--------cHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEe
Q 044932 378 CDGCSITWHA--------HGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 378 cs~cli~W~~--------d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~ 435 (689)
+... .+|.. ....+|.++.|+|+|||+|++....... ...+.+++...+|..+..
T Consensus 117 ~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~--~~~~~~~~~~~g~~~~~~ 179 (214)
T 1yzh_A 117 LNFS-DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGL--FEYSLVSFSQYGMKLNGV 179 (214)
T ss_dssp EESC-CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHH--HHHHHHHHHHHTCEEEEE
T ss_pred EECC-CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHH--HHHHHHHHHHCCCeeeec
Confidence 8643 34432 1247999999999999999998754222 234566677778876544
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.22 E-value=3.4e-11 Score=117.37 Aligned_cols=118 Identities=10% Similarity=0.140 Sum_probs=81.5
Q ss_pred CCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHH----cCCC-cEEecCCCCCCC--CCCCCcceEE
Q 044932 309 IRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALE----RGFP-AVVSPLGNRRLP--FPSGVFDAIH 377 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~e----RGL~-~i~~~~dt~~LP--FpD~SFDlVh 377 (689)
..+|||||||+|.++..|+. ..|+|+|+++. +++.|.+ .++. ..+...|...++ |++++||.|+
T Consensus 39 ~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~-----~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~ 113 (213)
T 2fca_A 39 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKS-----VIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVY 113 (213)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHH-----HHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEE
T ss_pred CceEEEEecCCCHHHHHHHHHCCCCCEEEEEechH-----HHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEE
Confidence 46899999999999888774 35899998864 4444443 4664 345556666676 8889999998
Q ss_pred ecccccccccc--------HHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEE
Q 044932 378 CDGCSITWHAH--------GGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 378 cs~cli~W~~d--------~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~ 434 (689)
+... .+|... ...+|.++.|+|||||+|++.+...... ..+.+++...+|....
T Consensus 114 ~~~~-~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~--~~~~~~~~~~g~~~~~ 175 (213)
T 2fca_A 114 LNFS-DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLF--EYSLKSFSEYGLLLTY 175 (213)
T ss_dssp EESC-CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHH--HHHHHHHHHHTCEEEE
T ss_pred EECC-CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHH--HHHHHHHHHCCCcccc
Confidence 7532 244321 2578999999999999999987543221 2345555666776543
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=4e-11 Score=122.34 Aligned_cols=99 Identities=17% Similarity=0.201 Sum_probs=73.6
Q ss_pred CCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHc-----------CC-CcEEecCCCCCCC----CC
Q 044932 309 IRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALER-----------GF-PAVVSPLGNRRLP----FP 369 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eR-----------GL-~~i~~~~dt~~LP----Fp 369 (689)
..+|||+|||+|.++..|+.. .|+++|+++ .|++.|.++ +. ...+...|...++ |+
T Consensus 35 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~-----~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 109 (313)
T 3bgv_A 35 DITVLDLGCGKGGDLLKWKKGRINKLVCTDIAD-----VSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFR 109 (313)
T ss_dssp CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCH-----HHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCS
T ss_pred CCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCH-----HHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcc
Confidence 568999999999998888743 589999886 455555543 11 2334556666665 64
Q ss_pred --CCCcceEEecccccccc-c---cHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 370 --SGVFDAIHCDGCSITWH-A---HGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 370 --D~SFDlVhcs~cli~W~-~---d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
+++||+|+|.. .+||. . +...+|.++.|+|||||+|+++.+..
T Consensus 110 ~~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 110 DPQMCFDICSCQF-VCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp STTCCEEEEEEET-CGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred cCCCCEEEEEEec-chhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 45999999976 45666 3 34689999999999999999998763
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.1e-11 Score=113.27 Aligned_cols=100 Identities=14% Similarity=0.059 Sum_probs=70.8
Q ss_pred CCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHH----cCCC-cEEecCCCCCCC--CCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALE----RGFP-AVVSPLGNRRLP--FPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~e----RGL~-~i~~~~dt~~LP--FpD~SFDlVh 377 (689)
...+|||+|||+|.++..++.. .|+++|+++. |++.|.+ .++. ..+...|...++ +++++||+|+
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~-----~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~ 118 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSRGAASVLFVESDQR-----SAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVL 118 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHH-----HHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHH-----HHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEE
Confidence 3578999999999998866643 4899999874 4444443 3553 334455544443 5578999999
Q ss_pred eccccccccccHHHHHHHHHh--ccCCCcEEEEEcCC
Q 044932 378 CDGCSITWHAHGGKLLLEMNR--ILRPSGYFILSTKH 412 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~R--VLRPGG~fVIsdp~ 412 (689)
+.....+...+...+|.++.+ +|+|||+|++..+.
T Consensus 119 ~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 119 ADPPYNVDSADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp ECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred ECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 864322212457789999999 99999999998754
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-11 Score=116.15 Aligned_cols=149 Identities=12% Similarity=0.039 Sum_probs=84.8
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc----CCCcEEecCC
Q 044932 291 HYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER----GFPAVVSPLG 362 (689)
Q Consensus 291 ~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR----GL~~i~~~~d 362 (689)
.+++.+.+.++.. ....+|||+|||+|.++..++.. .|+++|+++. +++.|.++ ++...+...|
T Consensus 16 ~~~~~~~~~l~~~---~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~-----~~~~a~~~~~~~~~~~~~~~~d 87 (215)
T 4dzr_A 16 VLVEEAIRFLKRM---PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMD-----ALAVARRNAERFGAVVDWAAAD 87 (215)
T ss_dssp HHHHHHHHHHTTC---CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC------------------------CCHHH
T ss_pred HHHHHHHHHhhhc---CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHH-----HHHHHHHHHHHhCCceEEEEcc
Confidence 3444455444321 14579999999999998877754 5899999874 44444433 3222233333
Q ss_pred CCCCCCCC-----CCcceEEecccccccc------cc-------------------HHHHHHHHHhccCCCcE-EEEEcC
Q 044932 363 NRRLPFPS-----GVFDAIHCDGCSITWH------AH-------------------GGKLLLEMNRILRPSGY-FILSTK 411 (689)
Q Consensus 363 t~~LPFpD-----~SFDlVhcs~cli~W~------~d-------------------~~~aL~EI~RVLRPGG~-fVIsdp 411 (689)
... ++++ ++||+|+|....++.. .. ...+|.++.|+|||||+ +++..+
T Consensus 88 ~~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 166 (215)
T 4dzr_A 88 GIE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG 166 (215)
T ss_dssp HHH-HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred hHh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 333 5665 8999999842111100 00 05788999999999999 555555
Q ss_pred CCchhHHHHHHHHHH--hcceeEEEeeccccCceeEEEEEeC
Q 044932 412 HDSIEEEEALTTLTA--SICWNILAHKTDEISEMGVKIYQKP 451 (689)
Q Consensus 412 ~~~le~~~~ie~La~--~l~W~~v~~~~~~~g~~~i~IwqKp 451 (689)
.... ..+..++. ..+|..+....+..+...+.+++|.
T Consensus 167 ~~~~---~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~~~ 205 (215)
T 4dzr_A 167 HNQA---DEVARLFAPWRERGFRVRKVKDLRGIDRVIAVTRE 205 (215)
T ss_dssp TSCH---HHHHHHTGGGGGGTEECCEEECTTSCEEEEEEEEC
T ss_pred CccH---HHHHHHHHHhhcCCceEEEEEecCCCEEEEEEEEc
Confidence 4332 34667777 7788765544443445566666664
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-10 Score=120.52 Aligned_cols=139 Identities=11% Similarity=0.168 Sum_probs=95.4
Q ss_pred CCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCC--cEEecCCCCCCC-CCCCCcceEEeccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFP--AVVSPLGNRRLP-FPSGVFDAIHCDGC 381 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~--~i~~~~dt~~LP-FpD~SFDlVhcs~c 381 (689)
..+|||||||+|.++..++.. .++++|+ |... ....+.+...++. ..+...+....+ ++.+.||+|+|..+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~v 257 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTR-DAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDC 257 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGH-HHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESC
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHH-HHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEecc
Confidence 679999999999998888753 5788888 5322 2222333334543 234445555554 23467999999877
Q ss_pred cccccc-cHHHHHHHHHhccCCCcEEEEEcCC-------Cc-----------------hhHHHHHHHHHHhcceeEEEee
Q 044932 382 SITWHA-HGGKLLLEMNRILRPSGYFILSTKH-------DS-----------------IEEEEALTTLTASICWNILAHK 436 (689)
Q Consensus 382 li~W~~-d~~~aL~EI~RVLRPGG~fVIsdp~-------~~-----------------le~~~~ie~La~~l~W~~v~~~ 436 (689)
+.+|.. +...+|.++.|+|+|||+|+|.+.. .. ......+..+++..+|+.+..
T Consensus 258 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~- 336 (352)
T 3mcz_A 258 LHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGER- 336 (352)
T ss_dssp GGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEEE-
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceeee-
Confidence 766543 2378999999999999999997631 00 001346889999999998763
Q ss_pred ccccCceeEEEEEeCC
Q 044932 437 TDEISEMGVKIYQKPE 452 (689)
Q Consensus 437 ~~~~g~~~i~IwqKp~ 452 (689)
..+...+.+.+||.
T Consensus 337 --~~g~~~l~~a~kp~ 350 (352)
T 3mcz_A 337 --SIGRYTLLIGQRSS 350 (352)
T ss_dssp --EETTEEEEEEECCC
T ss_pred --ccCceEEEEEecCC
Confidence 23566788999985
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=6.8e-11 Score=123.76 Aligned_cols=134 Identities=12% Similarity=0.064 Sum_probs=86.5
Q ss_pred CCCeEEEECCccchhHHHhh----cCCeEEEEcCCcccHHHHHHHHHHc----CCC-cEEecCCCCCCCCCCCCcceEEe
Q 044932 308 NIRVVLEIGSADLSFVASLL----AKEVLTLTVGLKDDLVDLAQVALER----GFP-AVVSPLGNRRLPFPSGVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La----~~~V~gmDIsp~D~seamlq~A~eR----GL~-~i~~~~dt~~LPFpD~SFDlVhc 378 (689)
...+|||||||+|.+++.++ +..|+++|++| .|++.|+++ |+. ..+...++..+| +++||+|++
T Consensus 122 ~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~-----~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~ 194 (298)
T 3fpf_A 122 RGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEP-----DIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMV 194 (298)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSH-----HHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEE
T ss_pred CcCEEEEECCCccHHHHHHHHHccCCEEEEEECCH-----HHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEE
Confidence 46899999999997764432 34699999987 455555543 663 234455665655 799999997
Q ss_pred ccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhH-HHHHHHHHHhcceeEEEeeccccC-ceeEEEEEeCCC
Q 044932 379 DGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEE-EEALTTLTASICWNILAHKTDEIS-EMGVKIYQKPES 453 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~-~~~ie~La~~l~W~~v~~~~~~~g-~~~i~IwqKp~~ 453 (689)
... ..+...++.++.|+|||||+|++...+..... ...+.. ...-+|........+.. .+.+++++|...
T Consensus 195 ~a~----~~d~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~-~~~~gf~~~~~~~p~~~v~N~vv~a~k~~~ 266 (298)
T 3fpf_A 195 AAL----AEPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSD-DDITGFRRAGVVLPSGKVNNTSVLVFKCPD 266 (298)
T ss_dssp CTT----CSCHHHHHHHHHHHCCTTCEEEEEECCGGGGGSSCCCCT-GGGTTEEEEEEECCCTTCCCEEEEEEECC-
T ss_pred CCC----ccCHHHHHHHHHHHcCCCcEEEEEcCcchhhhccccCCh-hhhhhhhheeEECCCCCcCcEEEEEEccCC
Confidence 532 35788999999999999999999986643210 000000 12227877654443222 345777787543
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.4e-11 Score=120.35 Aligned_cols=122 Identities=14% Similarity=0.182 Sum_probs=77.2
Q ss_pred CCCeEEEECCccchhHHHhhc--C--CeEEEEcCCcccHHHHHHHH---HH----cCCC-cEEecCCCCCCCCCCCCcce
Q 044932 308 NIRVVLEIGSADLSFVASLLA--K--EVLTLTVGLKDDLVDLAQVA---LE----RGFP-AVVSPLGNRRLPFPSGVFDA 375 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~--~--~V~gmDIsp~D~seamlq~A---~e----RGL~-~i~~~~dt~~LPFpD~SFDl 375 (689)
...+|||||||+|.++..|+. . .|+|+|+++. .|++.| .+ .+++ ..+...+...+|. ..||.
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~----~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~--~~~d~ 97 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKE----NLFDISKKIIKKPSKGGLSNVVFVIAAAESLPF--ELKNI 97 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCG----GGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCG--GGTTC
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHH----HHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhh--hccCe
Confidence 356899999999999988873 2 4899999963 344444 32 3554 3455667777753 23344
Q ss_pred EEecccccccc-------ccHHHHHHHHHhccCCCcEEEEEcCC-------C--------chhHH---HHHHHHHHhcce
Q 044932 376 IHCDGCSITWH-------AHGGKLLLEMNRILRPSGYFILSTKH-------D--------SIEEE---EALTTLTASICW 430 (689)
Q Consensus 376 Vhcs~cli~W~-------~d~~~aL~EI~RVLRPGG~fVIsdp~-------~--------~le~~---~~ie~La~~l~W 430 (689)
|.+..+.++|. .+...+|.|+.|+|||||+|++.... . ....+ .++..++...+|
T Consensus 98 v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf 177 (225)
T 3p2e_A 98 ADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGF 177 (225)
T ss_dssp EEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTC
T ss_pred EEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCC
Confidence 44332223332 12356899999999999999992210 0 00011 237788888899
Q ss_pred eEEEe
Q 044932 431 NILAH 435 (689)
Q Consensus 431 ~~v~~ 435 (689)
.+...
T Consensus 178 ~v~~~ 182 (225)
T 3p2e_A 178 RIDDV 182 (225)
T ss_dssp EEEEE
T ss_pred Ceeee
Confidence 87654
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-10 Score=106.50 Aligned_cols=114 Identities=17% Similarity=0.150 Sum_probs=77.7
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc----CCC-cEEecCCC-CCCCCCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER----GFP-AVVSPLGN-RRLPFPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR----GL~-~i~~~~dt-~~LPFpD~SFDlVh 377 (689)
...+|||+|||+|.++..++.. .|+++|+++ .+++.|.++ ++. .++...+. ..+|..+++||+|+
T Consensus 25 ~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~-----~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~ 99 (178)
T 3hm2_A 25 PHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISE-----ERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIF 99 (178)
T ss_dssp TTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCH-----HHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCH-----HHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEE
Confidence 3568999999999999888765 488898876 455555543 554 22333333 33444348999999
Q ss_pred eccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEE
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v 433 (689)
+.... ++ ..+|.++.|+|||||++++..... .....+..+++..++...
T Consensus 100 ~~~~~-~~----~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~~~~~~~~~~ 148 (178)
T 3hm2_A 100 IGGGL-TA----PGVFAAAWKRLPVGGRLVANAVTV--ESEQMLWALRKQFGGTIS 148 (178)
T ss_dssp ECC-T-TC----TTHHHHHHHTCCTTCEEEEEECSH--HHHHHHHHHHHHHCCEEE
T ss_pred ECCcc-cH----HHHHHHHHHhcCCCCEEEEEeecc--ccHHHHHHHHHHcCCeeE
Confidence 87544 32 479999999999999999987642 222345566666666553
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-10 Score=110.57 Aligned_cols=127 Identities=9% Similarity=0.004 Sum_probs=84.0
Q ss_pred CCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHH----cCCC-cEEecCCCCCCCCCCCCcceEEec
Q 044932 309 IRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALE----RGFP-AVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~e----RGL~-~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
..+|||+|||+|.++..++. ..|+++|+++. +++.|.+ .++. ..+...+...++ ++++||+|+|.
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~ 139 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGK-----RVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISR 139 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHH-----HHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECS
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHH-----HHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEe
Confidence 46899999999998877764 35899998864 4444443 3554 334455555554 46899999974
Q ss_pred cccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEee----ccccCceeEEEEEeC
Q 044932 380 GCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHK----TDEISEMGVKIYQKP 451 (689)
Q Consensus 380 ~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~----~~~~g~~~i~IwqKp 451 (689)
. . .+...++.++.++|+|||++++........ .+..+.. +|..+... .+..+...+.+++|.
T Consensus 140 ~-~----~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~---~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~k~ 205 (207)
T 1jsx_A 140 A-F----ASLNDMVSWCHHLPGEQGRFYALKGQMPED---EIALLPE--EYQVESVVKLQVPALDGERHLVVIKAN 205 (207)
T ss_dssp C-S----SSHHHHHHHHTTSEEEEEEEEEEESSCCHH---HHHTSCT--TEEEEEEEEEECC--CCEEEEEEEEEC
T ss_pred c-c----CCHHHHHHHHHHhcCCCcEEEEEeCCCchH---HHHHHhc--CCceeeeeeeccCCCCCceEEEEEEec
Confidence 3 1 356789999999999999999986554322 3555554 78775422 111233456666653
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-10 Score=116.49 Aligned_cols=145 Identities=14% Similarity=0.110 Sum_probs=93.2
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCC
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLP 367 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LP 367 (689)
..+++.|..++. ...+|||+|||+|.++..++.. .|+++|++|... ....+.+...++...+...+... +
T Consensus 108 ~~~~~~l~~~~~------~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v-~~a~~n~~~~~~~v~~~~~d~~~-~ 179 (254)
T 2nxc_A 108 RLALKALARHLR------PGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVL-PQAEANAKRNGVRPRFLEGSLEA-A 179 (254)
T ss_dssp HHHHHHHHHHCC------TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGH-HHHHHHHHHTTCCCEEEESCHHH-H
T ss_pred HHHHHHHHHhcC------CCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHH-HHHHHHHHHcCCcEEEEECChhh-c
Confidence 345555555432 3578999999999998777654 599999998533 22223333446543333333322 2
Q ss_pred CCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccccCceeEEE
Q 044932 368 FPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEISEMGVKI 447 (689)
Q Consensus 368 FpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~g~~~i~I 447 (689)
+++++||+|+|... .+ ....++.++.|+|||||++++++.... ....+..+++..+|+.+..... +.-..++
T Consensus 180 ~~~~~fD~Vv~n~~-~~---~~~~~l~~~~~~LkpgG~lils~~~~~--~~~~v~~~l~~~Gf~~~~~~~~--~~W~~l~ 251 (254)
T 2nxc_A 180 LPFGPFDLLVANLY-AE---LHAALAPRYREALVPGGRALLTGILKD--RAPLVREAMAGAGFRPLEEAAE--GEWVLLA 251 (254)
T ss_dssp GGGCCEEEEEEECC-HH---HHHHHHHHHHHHEEEEEEEEEEEEEGG--GHHHHHHHHHHTTCEEEEEEEE--TTEEEEE
T ss_pred CcCCCCCEEEECCc-HH---HHHHHHHHHHHHcCCCCEEEEEeeccC--CHHHHHHHHHHCCCEEEEEecc--CCeEEEE
Confidence 55789999998532 12 245889999999999999999865422 2345778888889988654332 3333444
Q ss_pred EEe
Q 044932 448 YQK 450 (689)
Q Consensus 448 wqK 450 (689)
++|
T Consensus 252 ~~k 254 (254)
T 2nxc_A 252 YGR 254 (254)
T ss_dssp EEC
T ss_pred EEC
Confidence 443
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-10 Score=122.68 Aligned_cols=139 Identities=10% Similarity=0.044 Sum_probs=93.7
Q ss_pred CCCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHc----CCC--cEEecCCCCCC--CCCCCCcce
Q 044932 308 NIRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALER----GFP--AVVSPLGNRRL--PFPSGVFDA 375 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eR----GL~--~i~~~~dt~~L--PFpD~SFDl 375 (689)
...+|||||||+|.++..|+. ..++++|+ | .+++.|.++ ++. ..+...|.... |+| ++||+
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-----~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~ 251 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-P-----QQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDA 251 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-H-----HHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-H-----HHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCE
Confidence 357999999999999988875 24888887 4 356666553 432 23444554443 677 89999
Q ss_pred EEeccccccccc-cHHHHHHHHHhccCCCcEEEEEcCC--C--ch-----------------------hHHHHHHHHHHh
Q 044932 376 IHCDGCSITWHA-HGGKLLLEMNRILRPSGYFILSTKH--D--SI-----------------------EEEEALTTLTAS 427 (689)
Q Consensus 376 Vhcs~cli~W~~-d~~~aL~EI~RVLRPGG~fVIsdp~--~--~l-----------------------e~~~~ie~La~~ 427 (689)
|++..++.+|.. +...+|.++.|+|||||+|+|.+.. . .. ....++..+++.
T Consensus 252 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 331 (363)
T 3dp7_A 252 VWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIEN 331 (363)
T ss_dssp EEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHT
T ss_pred EEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHH
Confidence 999887766653 3357899999999999999997632 0 00 023568889999
Q ss_pred cceeEEEeeccccCceeEEEEEeCCC
Q 044932 428 ICWNILAHKTDEISEMGVKIYQKPES 453 (689)
Q Consensus 428 l~W~~v~~~~~~~g~~~i~IwqKp~~ 453 (689)
.+|+.+...........+..++|..+
T Consensus 332 AGf~~v~~~~~~g~~~svi~~~~~~~ 357 (363)
T 3dp7_A 332 AGLEVEEIQDNIGLGHSILQCRLKEG 357 (363)
T ss_dssp TTEEESCCCCCBTTTBEEEEEEEC--
T ss_pred cCCeEEEEEeCCCCCceEEEEeeccc
Confidence 99998765433323344555555433
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=7.5e-11 Score=123.91 Aligned_cols=114 Identities=14% Similarity=0.148 Sum_probs=81.8
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCCC--cEEecCCCC
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGFP--AVVSPLGNR 364 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL~--~i~~~~dt~ 364 (689)
..|.+.|..... +. ...+|||||||+|.++..++.. .|+|+|+++ .. ..+.+.+...++. ..+...+..
T Consensus 52 ~~~~~~i~~~~~-~~---~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l-~~a~~~~~~~~~~~~v~~~~~d~~ 125 (349)
T 3q7e_A 52 LTYRNSMFHNRH-LF---KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-IS-DYAVKIVKANKLDHVVTIIKGKVE 125 (349)
T ss_dssp HHHHHHHHTCHH-HH---TTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HH-HHHHHHHHHTTCTTTEEEEESCTT
T ss_pred HHHHHHHHhccc-cC---CCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HH-HHHHHHHHHcCCCCcEEEEECcHH
Confidence 455555554322 11 3578999999999998888765 599999984 22 3334445556765 455667778
Q ss_pred CCCCCCCCcceEEecc--ccccccccHHHHHHHHHhccCCCcEEEEE
Q 044932 365 RLPFPSGVFDAIHCDG--CSITWHAHGGKLLLEMNRILRPSGYFILS 409 (689)
Q Consensus 365 ~LPFpD~SFDlVhcs~--cli~W~~d~~~aL~EI~RVLRPGG~fVIs 409 (689)
.+++++++||+|+|.. ..+.+......+|.++.|+|||||++++.
T Consensus 126 ~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 126 EVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp TCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred HccCCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 8899999999999853 22334567789999999999999999844
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.3e-11 Score=117.66 Aligned_cols=99 Identities=11% Similarity=-0.056 Sum_probs=73.0
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCC--CcEEecCCCCCCCCCC-----CCcceEEe
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGF--PAVVSPLGNRRLPFPS-----GVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL--~~i~~~~dt~~LPFpD-----~SFDlVhc 378 (689)
...+|||+|||+|.++..|+.. .|+++|+++ .|++.|.++.- ...+...+...++++. ..||+|+|
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~-----~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~ 130 (245)
T 3ggd_A 56 PELPLIDFACGNGTQTKFLSQFFPRVIGLDVSK-----SALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYM 130 (245)
T ss_dssp TTSCEEEETCTTSHHHHHHHHHSSCEEEEESCH-----HHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCH-----HHHHHHHHhCcccCceEEECcccccccccccccccCccEEEE
Confidence 3468999999999999888754 699999876 57777777532 3344555655554431 34999998
Q ss_pred ccccccccc--cHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 379 DGCSITWHA--HGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 379 s~cli~W~~--d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
..++ ++.. +...+|.++.|+|||||+++|.+..
T Consensus 131 ~~~~-~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 165 (245)
T 3ggd_A 131 RTGF-HHIPVEKRELLGQSLRILLGKQGAMYLIELG 165 (245)
T ss_dssp ESSS-TTSCGGGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred cchh-hcCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 7554 4444 6789999999999999999888754
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.18 E-value=8.8e-11 Score=120.28 Aligned_cols=116 Identities=15% Similarity=0.061 Sum_probs=78.4
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCC-----CCCCcceEEecc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPF-----PSGVFDAIHCDG 380 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPF-----pD~SFDlVhcs~ 380 (689)
...+|||||||+|.++..|+.+ .|+++|+++ .|++.|+++.-.. ....+...+++ .+++||+|+|..
T Consensus 45 ~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~-----~ml~~Ar~~~~~~-~v~~~~~~~~~~~~~~~~~~fD~Vv~~~ 118 (261)
T 3iv6_A 45 PGSTVAVIGASTRFLIEKALERGASVTVFDFSQ-----RMCDDLAEALADR-CVTIDLLDITAEIPKELAGHFDFVLNDR 118 (261)
T ss_dssp TTCEEEEECTTCHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHTSSS-CCEEEECCTTSCCCGGGTTCCSEEEEES
T ss_pred CcCEEEEEeCcchHHHHHHHhcCCEEEEEECCH-----HHHHHHHHHHHhc-cceeeeeecccccccccCCCccEEEEhh
Confidence 3578999999999999888865 589999875 6888888763221 11111122222 257999999987
Q ss_pred cccccc-ccHHHHHHHHHhccCCCcEEEEEcCCCchhH-HHHHHHHHHhcce
Q 044932 381 CSITWH-AHGGKLLLEMNRILRPSGYFILSTKHDSIEE-EEALTTLTASICW 430 (689)
Q Consensus 381 cli~W~-~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~-~~~ie~La~~l~W 430 (689)
.+.++. .+...+|.++.|+| |||+++++.+...... ...+........|
T Consensus 119 ~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g~~~~d~~~l~~~~~~g~~ 169 (261)
T 3iv6_A 119 LINRFTTEEARRACLGMLSLV-GSGTVRASVKLGFYDIDLKLIEYGEQSGTL 169 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBSCCHHHHHHHHHHHTTTCH
T ss_pred hhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccCcccccHHHHHHHHhcCCe
Confidence 655543 35567999999999 9999999987654432 2234444444333
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.4e-11 Score=122.69 Aligned_cols=99 Identities=19% Similarity=0.265 Sum_probs=70.4
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCC-----------------------------
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGF----------------------------- 354 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL----------------------------- 354 (689)
...+|||||||+|.++..|+.. .|+|+|+++ .|++.|.++--
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~-----~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDS-----RLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTV 120 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCH-----HHHHHHHHTC------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCH-----HHHHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 3579999999999998887753 589999986 46666665411
Q ss_pred ----------------------------------CcEEecCCCCC-----CCCCCCCcceEEecccccccc------ccH
Q 044932 355 ----------------------------------PAVVSPLGNRR-----LPFPSGVFDAIHCDGCSITWH------AHG 389 (689)
Q Consensus 355 ----------------------------------~~i~~~~dt~~-----LPFpD~SFDlVhcs~cli~W~------~d~ 389 (689)
...+...+... +++.+++||+|+|..++ +|. .+.
T Consensus 121 ~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl-~~ihl~~~~~~~ 199 (292)
T 3g07_A 121 RKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLT-KWVHLNWGDEGL 199 (292)
T ss_dssp ---------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCH-HHHHHHHHHHHH
T ss_pred cccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHH-HHhhhcCCHHHH
Confidence 11222333222 23678999999997654 332 256
Q ss_pred HHHHHHHHhccCCCcEEEEEcCC
Q 044932 390 GKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 390 ~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
..+|.++.|+|||||+|++...+
T Consensus 200 ~~~l~~~~~~LkpGG~lil~~~~ 222 (292)
T 3g07_A 200 KRMFRRIYRHLRPGGILVLEPQP 222 (292)
T ss_dssp HHHHHHHHHHEEEEEEEEEECCC
T ss_pred HHHHHHHHHHhCCCcEEEEecCC
Confidence 78999999999999999997543
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-10 Score=112.51 Aligned_cols=126 Identities=21% Similarity=0.269 Sum_probs=85.4
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHH----cCCC-cEEecCCCCCCCCCCCCcceEEe
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALE----RGFP-AVVSPLGNRRLPFPSGVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~e----RGL~-~i~~~~dt~~LPFpD~SFDlVhc 378 (689)
...+|||||||+|.++..|+.. .|+++|+++.+.. ...+.|.+ .+++ ..+...+...+||++++ |.|+.
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~-~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~ 104 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRME-KISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHV 104 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGH-HHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHH-HHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEE
Confidence 3568999999999999888754 5999999986442 12222322 3443 34556777889998887 88764
Q ss_pred cc--ccc--cccccHHHHHHHHHhccCCCcEEEEEcCC--------------Cch-h-HHHHHHHHHHhcceeEEEe
Q 044932 379 DG--CSI--TWHAHGGKLLLEMNRILRPSGYFILSTKH--------------DSI-E-EEEALTTLTASICWNILAH 435 (689)
Q Consensus 379 s~--cli--~W~~d~~~aL~EI~RVLRPGG~fVIsdp~--------------~~l-e-~~~~ie~La~~l~W~~v~~ 435 (689)
.. +.. ++..++..+|.++.|+|||||+|+++... ... . ..+.+..++...+|++...
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~~ 181 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLADC 181 (218)
T ss_dssp ESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEEE
T ss_pred EccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCceee
Confidence 32 111 13455679999999999999999997421 000 1 1234778889999987643
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=4.1e-11 Score=118.08 Aligned_cols=104 Identities=18% Similarity=0.156 Sum_probs=72.9
Q ss_pred CCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCc-EEecCCCCC-CC--CCCCCcceEEecc
Q 044932 309 IRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPA-VVSPLGNRR-LP--FPSGVFDAIHCDG 380 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~-i~~~~dt~~-LP--FpD~SFDlVhcs~ 380 (689)
..+|||||||+|.++..|+.. .|+|+|+++..+ ..+.+.+.+.++.. .+...|+.. ++ |++++||+|++..
T Consensus 35 ~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l-~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 35 APVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGV-GACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHH-HHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHH-HHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 568999999999998888742 499999987432 12223334456653 344556555 34 7899999999763
Q ss_pred ccccccccH--------HHHHHHHHhccCCCcEEEEEcCCCc
Q 044932 381 CSITWHAHG--------GKLLLEMNRILRPSGYFILSTKHDS 414 (689)
Q Consensus 381 cli~W~~d~--------~~aL~EI~RVLRPGG~fVIsdp~~~ 414 (689)
. .+|.... ..+|.++.|+|||||+|++.+....
T Consensus 114 ~-~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~ 154 (218)
T 3dxy_A 114 P-DPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEP 154 (218)
T ss_dssp C-CCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHH
T ss_pred C-CCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHH
Confidence 2 3454322 1599999999999999999886643
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-10 Score=113.95 Aligned_cols=122 Identities=18% Similarity=0.151 Sum_probs=81.3
Q ss_pred CCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCC---CCCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRR---LPFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~---LPFpD~SFDlVhcs 379 (689)
...+|||+|||+|.++..|+. ..|+++|+++... ..+++.|..+ ....+...+... +|+++++||+|+|.
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i-~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSG-RDLINLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHH-HHHHHHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHHhhcc-CCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 356899999999999887764 3599999987422 3456666664 223344455544 56677899999985
Q ss_pred cccccccccHHHHHHHHHhccCCCcEEEEEcCCCc------hh--HHHHHHHHHHhcceeEEEe
Q 044932 380 GCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDS------IE--EEEALTTLTASICWNILAH 435 (689)
Q Consensus 380 ~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~------le--~~~~ie~La~~l~W~~v~~ 435 (689)
.. . ......++.++.|+|||||+|+++..+.. .. .... .++++..+|+.+..
T Consensus 155 ~~-~--~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~l~~~Gf~~~~~ 214 (233)
T 2ipx_A 155 VA-Q--PDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASE-VKKMQQENMKPQEQ 214 (233)
T ss_dssp CC-C--TTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHH-HHTTGGGTEEEEEE
T ss_pred CC-C--ccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHH-HHHHHHCCCceEEE
Confidence 33 1 12224568889999999999999754311 00 0112 36677889987653
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.8e-10 Score=118.62 Aligned_cols=138 Identities=12% Similarity=0.117 Sum_probs=93.4
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCC--cEEecCCCCCCCCCCCCcceEEeccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFP--AVVSPLGNRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~--~i~~~~dt~~LPFpD~SFDlVhcs~c 381 (689)
...+|||||||+|.++..|+.. .++++|+ |.... ...+.+.+.++. ..+...|...+|+++. |+|++..+
T Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~-~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--D~v~~~~v 265 (359)
T 1x19_A 190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAID-LVNENAAEKGVADRMRGIAVDIYKESYPEA--DAVLFCRI 265 (359)
T ss_dssp TCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHH-HHHHHHHHTTCTTTEEEEECCTTTSCCCCC--SEEEEESC
T ss_pred CCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHH-HHHHHHHhcCCCCCEEEEeCccccCCCCCC--CEEEEech
Confidence 4679999999999998888753 5899998 75332 222223333554 3445566666788754 99999877
Q ss_pred cccccc-cHHHHHHHHHhccCCCcEEEEEcCCC--------------------ch-----hHHHHHHHHHHhcceeEEEe
Q 044932 382 SITWHA-HGGKLLLEMNRILRPSGYFILSTKHD--------------------SI-----EEEEALTTLTASICWNILAH 435 (689)
Q Consensus 382 li~W~~-d~~~aL~EI~RVLRPGG~fVIsdp~~--------------------~l-----e~~~~ie~La~~l~W~~v~~ 435 (689)
+.+|.. +...+|.++.|+|||||+|+|.+... .. ...+++.++++..+|+.+..
T Consensus 266 lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~ 345 (359)
T 1x19_A 266 LYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTM 345 (359)
T ss_dssp GGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEE
T ss_pred hccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEE
Confidence 766643 36789999999999999998876210 00 12245778888889987654
Q ss_pred eccccCceeEEEEEeC
Q 044932 436 KTDEISEMGVKIYQKP 451 (689)
Q Consensus 436 ~~~~~g~~~i~IwqKp 451 (689)
.... ...+.+++||
T Consensus 346 ~~~~--~~~vi~a~kp 359 (359)
T 1x19_A 346 VRKY--DHLLVQAVKP 359 (359)
T ss_dssp EEET--TEEEEEEECC
T ss_pred EecC--CceEEEEeCC
Confidence 4322 4456777775
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.15 E-value=7e-10 Score=107.59 Aligned_cols=114 Identities=15% Similarity=0.076 Sum_probs=78.9
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH----cCCC--cEEecCCCCCCCCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE----RGFP--AVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e----RGL~--~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
...+|||+|||+|.++..++.. .|+++|+++. +++.|++ .|+. ..+...+..........||+|++.
T Consensus 55 ~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~-----~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~ 129 (204)
T 3njr_A 55 RGELLWDIGGGSGSVSVEWCLAGGRAITIEPRAD-----RIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIG 129 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHH-----HHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEEC
T ss_pred CCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHH-----HHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEEC
Confidence 3578999999999998877754 5899998863 4555443 4665 334455554422223589999976
Q ss_pred cccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEE
Q 044932 380 GCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 380 ~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~ 434 (689)
... +.. +|.++.|+|||||+|++..... .....+.++++..+++...
T Consensus 130 ~~~-----~~~-~l~~~~~~LkpgG~lv~~~~~~--~~~~~~~~~l~~~g~~i~~ 176 (204)
T 3njr_A 130 GGG-----SQA-LYDRLWEWLAPGTRIVANAVTL--ESETLLTQLHARHGGQLLR 176 (204)
T ss_dssp SCC-----CHH-HHHHHHHHSCTTCEEEEEECSH--HHHHHHHHHHHHHCSEEEE
T ss_pred Ccc-----cHH-HHHHHHHhcCCCcEEEEEecCc--ccHHHHHHHHHhCCCcEEE
Confidence 422 455 9999999999999999987652 2334466667777776543
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.14 E-value=5.7e-10 Score=106.42 Aligned_cols=113 Identities=10% Similarity=0.013 Sum_probs=79.3
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHH----cCCCc-EEecCCCCCCCCCCCCcceEEe
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALE----RGFPA-VVSPLGNRRLPFPSGVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~e----RGL~~-i~~~~dt~~LPFpD~SFDlVhc 378 (689)
...+|||+|||+|.++..++.. .|+++|+++. +++.|.+ .++.. .+...+.........+||+|++
T Consensus 40 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~ 114 (204)
T 3e05_A 40 DDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQ-----YLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFI 114 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHH-----HHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHH-----HHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEE
Confidence 3578999999999998877743 4899998874 4444443 35542 3334444333223378999998
Q ss_pred ccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhccee
Q 044932 379 DGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWN 431 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~ 431 (689)
.... + +...+|.++.|+|||||+|++..... .....+..+++..+|.
T Consensus 115 ~~~~-~---~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~l~~~g~~ 161 (204)
T 3e05_A 115 GGSG-G---MLEEIIDAVDRRLKSEGVIVLNAVTL--DTLTKAVEFLEDHGYM 161 (204)
T ss_dssp SCCT-T---CHHHHHHHHHHHCCTTCEEEEEECBH--HHHHHHHHHHHHTTCE
T ss_pred CCCC-c---CHHHHHHHHHHhcCCCeEEEEEeccc--ccHHHHHHHHHHCCCc
Confidence 6533 2 56799999999999999999987642 2334577788888884
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=5.7e-10 Score=114.94 Aligned_cols=133 Identities=15% Similarity=0.124 Sum_probs=90.7
Q ss_pred CCCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHH----cCCC--cEEecCCCCCCCCCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALE----RGFP--AVVSPLGNRRLPFPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~e----RGL~--~i~~~~dt~~LPFpD~SFDlVh 377 (689)
...+|||||||+|.++..++. ..++++|+ | .+++.|.+ .++. ..+...|.. .|+|. +||+|+
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-----~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~ 240 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-Q-----GPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYV 240 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H-----HHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEE
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-H-----HHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEE
Confidence 457999999999999888875 24788887 5 34444443 3543 334444543 56775 899999
Q ss_pred ecccccccccc-HHHHHHHHHhccCCCcEEEEEcCC--C----ch-------------hHHHHHHHHHHhcceeEEEeec
Q 044932 378 CDGCSITWHAH-GGKLLLEMNRILRPSGYFILSTKH--D----SI-------------EEEEALTTLTASICWNILAHKT 437 (689)
Q Consensus 378 cs~cli~W~~d-~~~aL~EI~RVLRPGG~fVIsdp~--~----~l-------------e~~~~ie~La~~l~W~~v~~~~ 437 (689)
|..++++|... ...+|.++.|+|+|||+|+|.+.. . .. ...+++..+++..+|+.+....
T Consensus 241 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 320 (332)
T 3i53_A 241 LSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHP 320 (332)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred EehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence 98877666532 478999999999999999998642 1 00 0135688899999998876543
Q ss_pred cccCceeEEEEEe
Q 044932 438 DEISEMGVKIYQK 450 (689)
Q Consensus 438 ~~~g~~~i~IwqK 450 (689)
. .+ ..+..+++
T Consensus 321 ~-~~-~~vie~r~ 331 (332)
T 3i53_A 321 I-SY-VSIVEMTA 331 (332)
T ss_dssp C-SS-SEEEEEEE
T ss_pred C-CC-cEEEEEee
Confidence 2 22 44555553
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=3.8e-10 Score=113.46 Aligned_cols=134 Identities=13% Similarity=-0.026 Sum_probs=89.7
Q ss_pred CCCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHH----cCCC-cEEecCCCCCCCCC---CCCcce
Q 044932 308 NIRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALE----RGFP-AVVSPLGNRRLPFP---SGVFDA 375 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~e----RGL~-~i~~~~dt~~LPFp---D~SFDl 375 (689)
...+|||||||+|.++..|+. ..|+++|+++. ++++|.+ .|+. ..+...+.+.+++. +++||+
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~ 154 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRK-----KVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYAR 154 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHH-----HHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHH-----HHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceE
Confidence 357899999999988776653 35999998864 4444443 3664 34445555555543 489999
Q ss_pred EEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeecccc----CceeEEEEEeC
Q 044932 376 IHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEI----SEMGVKIYQKP 451 (689)
Q Consensus 376 Vhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~----g~~~i~IwqKp 451 (689)
|+|... .+...++.++.|+|||||+|++.......++...+...++.++|.......-.. +.-.+.+++|.
T Consensus 155 I~s~a~-----~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~~~~k~ 229 (249)
T 3g89_A 155 AVARAV-----APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEKT 229 (249)
T ss_dssp EEEESS-----CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred EEECCc-----CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEEEEEeC
Confidence 998532 245689999999999999999876544444444566777888998754432211 22346666663
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=6.9e-10 Score=116.80 Aligned_cols=135 Identities=14% Similarity=0.184 Sum_probs=91.6
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHH----cCCC--cEEecCCCCCCCCCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALE----RGFP--AVVSPLGNRRLPFPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~e----RGL~--~i~~~~dt~~LPFpD~SFDlVh 377 (689)
...+|||||||+|.++..|+.. .++++|+ |. +++.|.+ .++. ..+...|.. .|+|. .||+|+
T Consensus 202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~-----~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~ 273 (369)
T 3gwz_A 202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PP-----VAEEARELLTGRGLADRCEILPGDFF-ETIPD-GADVYL 273 (369)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HH-----HHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-SCSEEE
T ss_pred cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HH-----HHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-CceEEE
Confidence 4679999999999998888753 4788887 53 4444443 3543 334445544 57776 899999
Q ss_pred eccccccccccH-HHHHHHHHhccCCCcEEEEEcCC--C-------ch------------hHHHHHHHHHHhcceeEEEe
Q 044932 378 CDGCSITWHAHG-GKLLLEMNRILRPSGYFILSTKH--D-------SI------------EEEEALTTLTASICWNILAH 435 (689)
Q Consensus 378 cs~cli~W~~d~-~~aL~EI~RVLRPGG~fVIsdp~--~-------~l------------e~~~~ie~La~~l~W~~v~~ 435 (689)
|..++++|.... ..+|.++.|+|+|||+|+|.+.. . .. ...+++..+++..+|+.+..
T Consensus 274 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 353 (369)
T 3gwz_A 274 IKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERS 353 (369)
T ss_dssp EESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEE
T ss_pred hhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEE
Confidence 987776654322 37999999999999999997631 1 00 01356888999999998765
Q ss_pred eccccCceeEEEEEe
Q 044932 436 KTDEISEMGVKIYQK 450 (689)
Q Consensus 436 ~~~~~g~~~i~IwqK 450 (689)
.....+...+..++|
T Consensus 354 ~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 354 LPCGAGPVRIVEIRR 368 (369)
T ss_dssp EECSSSSEEEEEEEE
T ss_pred EECCCCCcEEEEEEe
Confidence 442334444555554
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-10 Score=115.75 Aligned_cols=99 Identities=19% Similarity=0.186 Sum_probs=69.4
Q ss_pred CCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHH----------cCCC-cEEecCCCCC-CC--CCC
Q 044932 309 IRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALE----------RGFP-AVVSPLGNRR-LP--FPS 370 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~e----------RGL~-~i~~~~dt~~-LP--FpD 370 (689)
..+|||||||+|.++..|+.. .|+|+|+++. |++.|.+ .++. ..+...++.. || |++
T Consensus 47 ~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~-----~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~ 121 (235)
T 3ckk_A 47 QVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVK-----VSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYK 121 (235)
T ss_dssp CEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHH-----HHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCT
T ss_pred CCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHH-----HHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCC
Confidence 468999999999999888753 5899999864 4444432 2343 3344566655 77 889
Q ss_pred CCcceEEecccccccccc--------HHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 371 GVFDAIHCDGCSITWHAH--------GGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 371 ~SFDlVhcs~cli~W~~d--------~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
++||+|++... .+|... ...+|.++.|+|||||.|++.....
T Consensus 122 ~~~D~v~~~~~-dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~ 171 (235)
T 3ckk_A 122 GQLTKMFFLFP-DPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVL 171 (235)
T ss_dssp TCEEEEEEESC-C-----------CCCHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred cCeeEEEEeCC-CchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCH
Confidence 99999986532 244321 1369999999999999999987653
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=9.7e-10 Score=110.57 Aligned_cols=133 Identities=12% Similarity=0.064 Sum_probs=88.5
Q ss_pred CCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHH----cCCC-cEEecCCCCCCCCCCCCcceEEec
Q 044932 309 IRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALE----RGFP-AVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~e----RGL~-~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
..+|||+|||+|.++..|+. ..|+++|+++. +++.|.+ .++. ..+...+... ++++++||+|+|.
T Consensus 110 ~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~-----~l~~a~~n~~~~~~~~v~~~~~d~~~-~~~~~~fD~Iv~n 183 (276)
T 2b3t_A 110 PCRILDLGTGTGAIALALASERPDCEIIAVDRMPD-----AVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSN 183 (276)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHH-----HHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEEC
T ss_pred CCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHH-----HHHHHHHHHHHcCCCceEEEEcchhh-hcccCCccEEEEC
Confidence 46899999999999888773 36999998863 4454443 3554 3344444433 3556899999986
Q ss_pred cccccc------------c------------ccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEe
Q 044932 380 GCSITW------------H------------AHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 380 ~cli~W------------~------------~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~ 435 (689)
...+.. . .....++.++.++|+|||++++....... ..+..+++..+|..+..
T Consensus 184 pPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---~~~~~~l~~~Gf~~v~~ 260 (276)
T 2b3t_A 184 PPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQG---EAVRQAFILAGYHDVET 260 (276)
T ss_dssp CCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCH---HHHHHHHHHTTCTTCCE
T ss_pred CCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHH---HHHHHHHHHCCCcEEEE
Confidence 322111 0 12357889999999999999998765433 34777888889976544
Q ss_pred eccccCceeEEEEEe
Q 044932 436 KTDEISEMGVKIYQK 450 (689)
Q Consensus 436 ~~~~~g~~~i~IwqK 450 (689)
..+..+...+.+++|
T Consensus 261 ~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 261 CRDYGDNERVTLGRY 275 (276)
T ss_dssp EECTTSSEEEEEEEC
T ss_pred EecCCCCCcEEEEEE
Confidence 444445555666654
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.9e-10 Score=104.99 Aligned_cols=113 Identities=12% Similarity=0.140 Sum_probs=78.5
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH----cCC--CcEEecCCCCCCCCCC-CCcceEEe
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE----RGF--PAVVSPLGNRRLPFPS-GVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e----RGL--~~i~~~~dt~~LPFpD-~SFDlVhc 378 (689)
...+|||+|||+|.++..++.. .|+++|+++. +++.|.+ .++ ...+...+... ++++ ++||+|++
T Consensus 33 ~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~-----~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~ 106 (192)
T 1l3i_A 33 KNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPE-----AISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKIPDIDIAVV 106 (192)
T ss_dssp TTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHH-----HHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTSCCEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHH-----HHHHHHHHHHHcCCCcceEEEecCHHH-hcccCCCCCEEEE
Confidence 3579999999999998888765 5899998763 4444443 354 22333344332 3343 58999998
Q ss_pred ccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeE
Q 044932 379 DGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNI 432 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~ 432 (689)
.... + +...+|.++.|+|+|||++++..... .....+..+++..+|..
T Consensus 107 ~~~~-~---~~~~~l~~~~~~l~~gG~l~~~~~~~--~~~~~~~~~l~~~g~~~ 154 (192)
T 1l3i_A 107 GGSG-G---ELQEILRIIKDKLKPGGRIIVTAILL--ETKFEAMECLRDLGFDV 154 (192)
T ss_dssp SCCT-T---CHHHHHHHHHHTEEEEEEEEEEECBH--HHHHHHHHHHHHTTCCC
T ss_pred CCch-H---HHHHHHHHHHHhcCCCcEEEEEecCc--chHHHHHHHHHHCCCce
Confidence 7543 2 45789999999999999999987642 23345667778888843
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.6e-10 Score=115.49 Aligned_cols=135 Identities=13% Similarity=0.077 Sum_probs=91.6
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHH----cCCC--cEEecCCCCCCCCCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALE----RGFP--AVVSPLGNRRLPFPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~e----RGL~--~i~~~~dt~~LPFpD~SFDlVh 377 (689)
...+|||+|||+|.++..++.. .++++|++ . +++.|.+ .++. ..+...+...+|++++ ||+|+
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~-----~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~ 237 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-S-----VLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVL 237 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-H-----HHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-H-----HHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEE
Confidence 4579999999999998887753 58888875 3 4444443 3543 3344556666678754 99999
Q ss_pred ecccccccc-ccHHHHHHHHHhccCCCcEEEEEcCCCc-------h-----------------hHHHHHHHHHHhcceeE
Q 044932 378 CDGCSITWH-AHGGKLLLEMNRILRPSGYFILSTKHDS-------I-----------------EEEEALTTLTASICWNI 432 (689)
Q Consensus 378 cs~cli~W~-~d~~~aL~EI~RVLRPGG~fVIsdp~~~-------l-----------------e~~~~ie~La~~l~W~~ 432 (689)
|..++.+|. ++...+|.++.|+|+|||+++|.+.... . ...+.+..+++..+|+.
T Consensus 238 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~ 317 (335)
T 2r3s_A 238 LPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSH 317 (335)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSE
T ss_pred EcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCe
Confidence 987766653 2346899999999999999999864210 0 01356788889999987
Q ss_pred EEeeccccCceeEEEEEe
Q 044932 433 LAHKTDEISEMGVKIYQK 450 (689)
Q Consensus 433 v~~~~~~~g~~~i~IwqK 450 (689)
+..... .+...+.+.++
T Consensus 318 ~~~~~~-~~~~~~i~~~~ 334 (335)
T 2r3s_A 318 SQLHSL-PTTQQQVIVAY 334 (335)
T ss_dssp EEEECC-TTSSSEEEEEE
T ss_pred eeEEEC-CCCceeEEEec
Confidence 765332 22334455544
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.4e-10 Score=116.24 Aligned_cols=136 Identities=10% Similarity=0.066 Sum_probs=93.3
Q ss_pred CcccchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhc--C-CeEEEEcCCcccHHHHHHHHH----HcCC
Q 044932 282 QSEFKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA--K-EVLTLTVGLKDDLVDLAQVAL----ERGF 354 (689)
Q Consensus 282 gt~F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~--~-~V~gmDIsp~D~seamlq~A~----eRGL 354 (689)
...|..........+..++. ...+|||+|||+|.++..++. . .|+++|+++. +++.|. ..++
T Consensus 105 ~~~f~~~~~~~~~~l~~~~~------~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~-----~~~~a~~n~~~n~~ 173 (278)
T 2frn_A 105 KIMFSPANVKERVRMAKVAK------PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPY-----TFKFLVENIHLNKV 173 (278)
T ss_dssp TSCCCGGGHHHHHHHHHHCC------TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHH-----HHHHHHHHHHHTTC
T ss_pred ceeEcCCcHHHHHHHHHhCC------CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHH-----HHHHHHHHHHHcCC
Confidence 35566664444455555432 357899999999999988774 3 4999999874 444443 3466
Q ss_pred C--cEEecCCCCCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCC--c--hhHHHHHHHHHHhc
Q 044932 355 P--AVVSPLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHD--S--IEEEEALTTLTASI 428 (689)
Q Consensus 355 ~--~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~--~--le~~~~ie~La~~l 428 (689)
. ..+...|...+++ +++||+|++... .....++.++.|+|||||+|++.+... . ......+...+...
T Consensus 174 ~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p-----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 247 (278)
T 2frn_A 174 EDRMSAYNMDNRDFPG-ENIADRILMGYV-----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEY 247 (278)
T ss_dssp TTTEEEECSCTTTCCC-CSCEEEEEECCC-----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHT
T ss_pred CceEEEEECCHHHhcc-cCCccEEEECCc-----hhHHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHc
Confidence 5 3355667777766 689999987421 233578999999999999999976432 1 12234578888999
Q ss_pred ceeEEE
Q 044932 429 CWNILA 434 (689)
Q Consensus 429 ~W~~v~ 434 (689)
+|....
T Consensus 248 G~~~~~ 253 (278)
T 2frn_A 248 GYDVEK 253 (278)
T ss_dssp TCEEEE
T ss_pred CCeeEE
Confidence 998754
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=3.4e-10 Score=118.71 Aligned_cols=113 Identities=13% Similarity=0.047 Sum_probs=79.4
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCC--CcEEecCCCC
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGF--PAVVSPLGNR 364 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL--~~i~~~~dt~ 364 (689)
..|.+.|.+.+.. . ...+|||||||+|.++..++.. .|+++|+++ .. ..+.+.+...++ ...+...+..
T Consensus 50 ~~~~~~i~~~~~~-~---~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~-~~a~~~~~~~~~~~~i~~~~~d~~ 123 (340)
T 2fyt_A 50 ESYRDFIYQNPHI-F---KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-IL-YQAMDIIRLNKLEDTITLIKGKIE 123 (340)
T ss_dssp HHHHHHHHHCGGG-T---TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HH-HHHHHHHHHTTCTTTEEEEESCTT
T ss_pred HHHHHHHHhhhhh-c---CCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HH-HHHHHHHHHcCCCCcEEEEEeeHH
Confidence 4566666665432 1 3568999999999998877754 599999985 32 233333444565 2345566777
Q ss_pred CCCCCCCCcceEEeccc--cccccccHHHHHHHHHhccCCCcEEEE
Q 044932 365 RLPFPSGVFDAIHCDGC--SITWHAHGGKLLLEMNRILRPSGYFIL 408 (689)
Q Consensus 365 ~LPFpD~SFDlVhcs~c--li~W~~d~~~aL~EI~RVLRPGG~fVI 408 (689)
.+++++++||+|+|... .+.+..+...+|.++.|+|||||+++.
T Consensus 124 ~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 169 (340)
T 2fyt_A 124 EVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 169 (340)
T ss_dssp TSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred HhcCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEc
Confidence 88999899999998642 223344567899999999999999983
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.10 E-value=4.7e-10 Score=109.74 Aligned_cols=131 Identities=11% Similarity=0.030 Sum_probs=84.9
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcC---CCcEEecCCCCC----CCCCCCCcceE
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERG---FPAVVSPLGNRR----LPFPSGVFDAI 376 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRG---L~~i~~~~dt~~----LPFpD~SFDlV 376 (689)
...+|||+|||+|.++..|+.. .|+++|+++ .+++.|.++. -...+...+... ++++ .+||+|
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~-----~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v 147 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAP-----RIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVI 147 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCH-----HHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEE
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCH-----HHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEE
Confidence 3568999999999998877643 489999886 4555555431 122333455555 7777 899999
Q ss_pred EeccccccccccH---HHHHHHHHhccCCCcEEEEEcC----CCc----hhHHHHHHHHHHhcceeEEEeecc-cc-Cce
Q 044932 377 HCDGCSITWHAHG---GKLLLEMNRILRPSGYFILSTK----HDS----IEEEEALTTLTASICWNILAHKTD-EI-SEM 443 (689)
Q Consensus 377 hcs~cli~W~~d~---~~aL~EI~RVLRPGG~fVIsdp----~~~----le~~~~ie~La~~l~W~~v~~~~~-~~-g~~ 443 (689)
++. ..++ ..+|.++.|+|||||+|++... ... ....+.+. ++...+|+.+..... .. ...
T Consensus 148 ~~~------~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~~~~~~~~~ 220 (230)
T 1fbn_A 148 YED------VAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVDIEPFEKDH 220 (230)
T ss_dssp EEC------CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEECTTTSTTE
T ss_pred EEe------cCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEccCCCccce
Confidence 832 1233 6789999999999999999521 111 01124466 677778887654332 11 124
Q ss_pred eEEEEEeC
Q 044932 444 GVKIYQKP 451 (689)
Q Consensus 444 ~i~IwqKp 451 (689)
++++++|+
T Consensus 221 ~~v~~~k~ 228 (230)
T 1fbn_A 221 VMFVGIWE 228 (230)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 56777764
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.4e-10 Score=115.60 Aligned_cols=120 Identities=13% Similarity=0.093 Sum_probs=80.0
Q ss_pred CCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHc-----CCCcEEecCC-CCCCCCCCCCcceE
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALER-----GFPAVVSPLG-NRRLPFPSGVFDAI 376 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eR-----GL~~i~~~~d-t~~LPFpD~SFDlV 376 (689)
++.+|||+|||+|.++..|++. .|+++|+++. |++.+.++ ++..+..... ....++.+.+||+|
T Consensus 77 pG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~-----~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvV 151 (233)
T 4df3_A 77 EGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPR-----VMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGL 151 (233)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHH-----HHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEE
T ss_pred CCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHH-----HHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEE
Confidence 4679999999999999888742 3999999874 55555443 2222222221 24456788999999
Q ss_pred EeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCch-------hHHHHHHHHHHhcceeEEEe
Q 044932 377 HCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSI-------EEEEALTTLTASICWNILAH 435 (689)
Q Consensus 377 hcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~l-------e~~~~ie~La~~l~W~~v~~ 435 (689)
++.. +++.+...+|.++.|+|||||+++|+...... .......+.++..+|+.+..
T Consensus 152 f~d~---~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~ 214 (233)
T 4df3_A 152 YADV---AQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDV 214 (233)
T ss_dssp EECC---CCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEE
T ss_pred EEec---cCChhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEE
Confidence 8642 33456778999999999999999997532111 11122334456678887654
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-09 Score=99.93 Aligned_cols=113 Identities=12% Similarity=0.060 Sum_probs=81.7
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH----cCCC-cEEecCCCCCCCCCCCCcceEEecc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE----RGFP-AVVSPLGNRRLPFPSGVFDAIHCDG 380 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e----RGL~-~i~~~~dt~~LPFpD~SFDlVhcs~ 380 (689)
...+|||+|||+|.++..++.. .|+++|+++. +++.|.+ .++. ..+...+... ++++++||+|+|..
T Consensus 35 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~-----~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~i~~~~ 108 (183)
T 2yxd_A 35 KDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDG-----AIEVTKQNLAKFNIKNCQIIKGRAED-VLDKLEFNKAFIGG 108 (183)
T ss_dssp TTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHH-----HHHHHHHHHHHTTCCSEEEEESCHHH-HGGGCCCSEEEECS
T ss_pred CCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHH-----HHHHHHHHHHHcCCCcEEEEECCccc-cccCCCCcEEEECC
Confidence 3568999999999999888764 4899998863 4444444 3543 3344445444 67778999999876
Q ss_pred ccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEe
Q 044932 381 CSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 381 cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~ 435 (689)
+ .+...+|.++.|+ |||+|++..+.. .....+.++++..+|.....
T Consensus 109 ~-----~~~~~~l~~~~~~--~gG~l~~~~~~~--~~~~~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 109 T-----KNIEKIIEILDKK--KINHIVANTIVL--ENAAKIINEFESRGYNVDAV 154 (183)
T ss_dssp C-----SCHHHHHHHHHHT--TCCEEEEEESCH--HHHHHHHHHHHHTTCEEEEE
T ss_pred c-----ccHHHHHHHHhhC--CCCEEEEEeccc--ccHHHHHHHHHHcCCeEEEE
Confidence 5 4667899999999 999999998652 22334677788888876543
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.08 E-value=2.4e-10 Score=106.14 Aligned_cols=143 Identities=15% Similarity=0.076 Sum_probs=87.2
Q ss_pred HHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHH----cCCC--cEEe
Q 044932 289 VLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALE----RGFP--AVVS 359 (689)
Q Consensus 289 a~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~e----RGL~--~i~~ 359 (689)
...+.+.+...+..+. ...+|||+|||+|.++..++.. .|+++|+++. +++.|.+ .++. ..+.
T Consensus 28 ~~~~~~~~~~~l~~~~---~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~-----~~~~a~~~~~~~~~~~~~~~~ 99 (187)
T 2fhp_A 28 TDKVKESIFNMIGPYF---DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFA-----ALKVIKENIAITKEPEKFEVR 99 (187)
T ss_dssp CHHHHHHHHHHHCSCC---SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHH-----HHHHHHHHHHHHTCGGGEEEE
T ss_pred HHHHHHHHHHHHHhhc---CCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHH-----HHHHHHHHHHHhCCCcceEEE
Confidence 3445555555543221 3468999999999998876643 5899999874 4444433 3542 3344
Q ss_pred cCCCCC----CCCCCCCcceEEeccccccccccHHHHHHHH--HhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEE
Q 044932 360 PLGNRR----LPFPSGVFDAIHCDGCSITWHAHGGKLLLEM--NRILRPSGYFILSTKHDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 360 ~~dt~~----LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI--~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v 433 (689)
..+... +++++++||+|++.... + ......++..+ .|+|+|||++++..+...... .. .-+|...
T Consensus 100 ~~d~~~~~~~~~~~~~~fD~i~~~~~~-~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~~~-----~~--~~~~~~~ 170 (187)
T 2fhp_A 100 KMDANRALEQFYEEKLQFDLVLLDPPY-A-KQEIVSQLEKMLERQLLTNEAVIVCETDKTVKLP-----ET--IGTLKKT 170 (187)
T ss_dssp ESCHHHHHHHHHHTTCCEEEEEECCCG-G-GCCHHHHHHHHHHTTCEEEEEEEEEEEETTCCCC-----SE--ETTEEEE
T ss_pred ECcHHHHHHHHHhcCCCCCEEEECCCC-C-chhHHHHHHHHHHhcccCCCCEEEEEeCCccccc-----cc--ccchhhh
Confidence 444332 23447899999986442 1 23456777777 999999999999876532210 01 1367665
Q ss_pred EeeccccCceeEEEEEe
Q 044932 434 AHKTDEISEMGVKIYQK 450 (689)
Q Consensus 434 ~~~~~~~g~~~i~IwqK 450 (689)
.... .+...+.+|++
T Consensus 171 ~~~~--~g~~~~~~~~~ 185 (187)
T 2fhp_A 171 RETV--YGITQVTIYRQ 185 (187)
T ss_dssp EEEE--ETTEEEEEEEC
T ss_pred hhhc--cCceEEEEEEe
Confidence 4332 34556777765
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.8e-10 Score=104.17 Aligned_cols=94 Identities=12% Similarity=0.091 Sum_probs=68.2
Q ss_pred CCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCC--------CCCCCcc
Q 044932 308 NIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLP--------FPSGVFD 374 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LP--------FpD~SFD 374 (689)
...+|||+|||+|.++..++. ..|+++|+++ .... ....+...+...++ +++++||
T Consensus 22 ~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~D 90 (180)
T 1ej0_A 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERVGDSKVQ 90 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccCCCCcee
Confidence 356999999999998877753 3589999987 4311 12334455666666 7789999
Q ss_pred eEEeccccccccccH-----------HHHHHHHHhccCCCcEEEEEcCCC
Q 044932 375 AIHCDGCSITWHAHG-----------GKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 375 lVhcs~cli~W~~d~-----------~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
+|++.... +|..+. ..+|.++.|+|+|||++++.....
T Consensus 91 ~i~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (180)
T 1ej0_A 91 VVMSDMAP-NMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp EEEECCCC-CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred EEEECCCc-cccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 99986432 333333 589999999999999999987653
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.6e-10 Score=111.93 Aligned_cols=118 Identities=8% Similarity=0.129 Sum_probs=81.9
Q ss_pred CCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHH----cCCC--cEEecCCCCCCC--CCCCCcceEE
Q 044932 309 IRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALE----RGFP--AVVSPLGNRRLP--FPSGVFDAIH 377 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~e----RGL~--~i~~~~dt~~LP--FpD~SFDlVh 377 (689)
..+|||+|||+|.++..|+.+ .|+++|+++. +++.|.+ .++. ..+...|...++ +++++||+|+
T Consensus 50 ~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~-----~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 50 KGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQER-----LADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHH-----HHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHH-----HHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 468999999999999888764 5899998864 4444443 3554 345555655554 6689999999
Q ss_pred eccccccc----c---------------ccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEE
Q 044932 378 CDGCSITW----H---------------AHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 378 cs~cli~W----~---------------~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~ 434 (689)
|....... . .+...+|.++.|+|||||+|++..++..... +..++...+|....
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~~l~~~~~~~~~ 197 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLD---IIDIMRKYRLEPKR 197 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHH---HHHHHHHTTEEEEE
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHH---HHHHHHHCCCceEE
Confidence 85221110 0 1235689999999999999999877654433 66677777887643
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.4e-09 Score=105.50 Aligned_cols=142 Identities=20% Similarity=0.129 Sum_probs=84.0
Q ss_pred CCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHH----cCCC--cEEecCCCCC-CCCC--CCCcc
Q 044932 309 IRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALE----RGFP--AVVSPLGNRR-LPFP--SGVFD 374 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~e----RGL~--~i~~~~dt~~-LPFp--D~SFD 374 (689)
..+|||||||+|.++..|+.. .|+++|+++. +++.|++ .|+. ..+...++.. +|.. .++||
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~-----~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD 138 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAH-----HAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFD 138 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHH-----HHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCS
T ss_pred CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHH-----HHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeE
Confidence 579999999999999888754 4899998864 4444444 3654 3344445433 3432 35999
Q ss_pred eEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCc---------hhHHHHH----HHHHHhcceeEEEeecc-cc
Q 044932 375 AIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDS---------IEEEEAL----TTLTASICWNILAHKTD-EI 440 (689)
Q Consensus 375 lVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~---------le~~~~i----e~La~~l~W~~v~~~~~-~~ 440 (689)
+|++.. +..+...+|.++.|+|||||+|++.+.... ......+ +.+...-.|.......- ..
T Consensus 139 ~V~~d~----~~~~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~ 214 (248)
T 3tfw_A 139 LIFIDA----DKPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATALQTVGTK 214 (248)
T ss_dssp EEEECS----CGGGHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEECSTT
T ss_pred EEEECC----chHHHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEeecCCCC
Confidence 999753 233556899999999999999999764311 0111223 33334445554432110 01
Q ss_pred CceeEEEEEeCCCchhHhh
Q 044932 441 SEMGVKIYQKPESNDIYEL 459 (689)
Q Consensus 441 g~~~i~IwqKp~~~~cy~~ 459 (689)
+.-++.+.++..+.+.|..
T Consensus 215 ~~DG~~i~~~~~~~~~~~~ 233 (248)
T 3tfw_A 215 GWDGFTLAWVNAAENLYFQ 233 (248)
T ss_dssp CSEEEEEEEECCC------
T ss_pred CCCeeEEEEEeCCcchHhH
Confidence 2356777777666555543
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=7.6e-10 Score=118.54 Aligned_cols=100 Identities=18% Similarity=0.110 Sum_probs=76.0
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH----cCCCcEEecCCCCCCCCCCCCcceEEeccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE----RGFPAVVSPLGNRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e----RGL~~i~~~~dt~~LPFpD~SFDlVhcs~c 381 (689)
...+|||+|||+|.++..++.. .|+++|+++. +++.|.+ .++...+...|...+++++++||+|+|...
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~-----al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp 307 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLA-----SVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPP 307 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHH-----HHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCC
T ss_pred CCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHH-----HHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCc
Confidence 3568999999999999888765 5899998864 4444443 466666666777777777799999998643
Q ss_pred cccc-----cccHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 382 SITW-----HAHGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 382 li~W-----~~d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
+ ++ ..+...+|.++.|+|||||+|+|...+.
T Consensus 308 ~-~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~ 343 (381)
T 3dmg_A 308 F-HVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPF 343 (381)
T ss_dssp C-CTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred h-hhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence 2 32 2345689999999999999999987654
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1e-09 Score=114.31 Aligned_cols=136 Identities=17% Similarity=0.269 Sum_probs=90.6
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHH----cCCC--cEEecCCCCCCCCCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALE----RGFP--AVVSPLGNRRLPFPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~e----RGL~--~i~~~~dt~~LPFpD~SFDlVh 377 (689)
...+|||||||+|.++..|+.. .++++|+ + .+++.|.+ .++. ..+...+... ++|. .||+|+
T Consensus 182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~-----~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~ 253 (374)
T 1qzz_A 182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-A-----GPAERARRRFADAGLADRVTVAEGDFFK-PLPV-TADVVL 253 (374)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H-----HHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-CEEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-H-----HHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC-CCCEEE
Confidence 4579999999999998887743 4788887 5 34555443 3543 3344445433 4554 499999
Q ss_pred ecccccccccc-HHHHHHHHHhccCCCcEEEEEcC--C--Cch--------------------hHHHHHHHHHHhcceeE
Q 044932 378 CDGCSITWHAH-GGKLLLEMNRILRPSGYFILSTK--H--DSI--------------------EEEEALTTLTASICWNI 432 (689)
Q Consensus 378 cs~cli~W~~d-~~~aL~EI~RVLRPGG~fVIsdp--~--~~l--------------------e~~~~ie~La~~l~W~~ 432 (689)
|..++.+|... ...+|.++.|+|+|||+|+|.+. . ... .....+..+++..+|+.
T Consensus 254 ~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~ 333 (374)
T 1qzz_A 254 LSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLAL 333 (374)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEE
T ss_pred EeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCce
Confidence 98776665432 24899999999999999999776 2 110 02346788899999988
Q ss_pred EEeeccccCce-----eEEEEEeCC
Q 044932 433 LAHKTDEISEM-----GVKIYQKPE 452 (689)
Q Consensus 433 v~~~~~~~g~~-----~i~IwqKp~ 452 (689)
+..... .+.. .+..++|+.
T Consensus 334 ~~~~~~-~~~~~~~~~~~i~~~~~~ 357 (374)
T 1qzz_A 334 ASERTS-GSTTLPFDFSILEFTAVS 357 (374)
T ss_dssp EEEEEE-CCSSCSSCEEEEEEEECC
T ss_pred EEEEEC-CCCcccCCcEEEEEEECc
Confidence 654432 2233 577777754
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.05 E-value=9e-10 Score=128.42 Aligned_cols=98 Identities=13% Similarity=0.105 Sum_probs=75.5
Q ss_pred CCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHc----------CCC-cEEecCCCCCCCCCCC
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALER----------GFP-AVVSPLGNRRLPFPSG 371 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eR----------GL~-~i~~~~dt~~LPFpD~ 371 (689)
...+|||||||+|.++..|+.. .|+|+|+++ .|++.|+++ ++. ..+...+...+|++++
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~-----emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~ 795 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISP-----KGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLH 795 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCH-----HHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCH-----HHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccC
Confidence 3578999999999999998864 489999886 466666551 333 3455677888999999
Q ss_pred CcceEEeccccccccccHH--HHHHHHHhccCCCcEEEEEcCC
Q 044932 372 VFDAIHCDGCSITWHAHGG--KLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 372 SFDlVhcs~cli~W~~d~~--~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+||+|+|..++.| ..++. .++.++.|+|||| +++|+++.
T Consensus 796 sFDlVV~~eVLeH-L~dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 796 DVDIGTCLEVIEH-MEEDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp SCCEEEEESCGGG-SCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred CeeEEEEeCchhh-CChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 9999999765544 44443 5899999999999 88887653
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.05 E-value=5.5e-10 Score=118.60 Aligned_cols=115 Identities=13% Similarity=0.124 Sum_probs=81.3
Q ss_pred HHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCCC--cEEecCCC
Q 044932 289 VLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGFP--AVVSPLGN 363 (689)
Q Consensus 289 a~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL~--~i~~~~dt 363 (689)
...|.+.|...+.. . ...+|||||||+|.++..++.. .|+++|++ .+. ..+.+.+...++. ..+...+.
T Consensus 48 ~~~~~~~i~~~~~~-~---~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~-~~a~~~~~~~~~~~~v~~~~~d~ 121 (376)
T 3r0q_C 48 MDAYFNAVFQNKHH-F---EGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMA-DHARALVKANNLDHIVEVIEGSV 121 (376)
T ss_dssp HHHHHHHHHTTTTT-T---TTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTH-HHHHHHHHHTTCTTTEEEEESCG
T ss_pred HHHHHHHHHhcccc-C---CCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHH-HHHHHHHHHcCCCCeEEEEECch
Confidence 34566666554332 1 3578999999999998887764 58999998 433 3334445556665 34556677
Q ss_pred CCCCCCCCCcceEEecc--ccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 364 RRLPFPSGVFDAIHCDG--CSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 364 ~~LPFpD~SFDlVhcs~--cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
..++++ ++||+|+|.. ..+.+......+|.+++|+|||||+|+++.
T Consensus 122 ~~~~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 122 EDISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp GGCCCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred hhcCcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 888888 8999999843 122222457789999999999999998764
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.04 E-value=6.8e-10 Score=108.69 Aligned_cols=114 Identities=12% Similarity=0.031 Sum_probs=81.8
Q ss_pred CCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHc-----CCC-cEEecCCCCCCCCCCCCcceE
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALER-----GFP-AVVSPLGNRRLPFPSGVFDAI 376 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eR-----GL~-~i~~~~dt~~LPFpD~SFDlV 376 (689)
...+|||+|||+|.++..|+.. .|+++|+++. +++.|.++ |.. ..+...+...+|+++++||+|
T Consensus 96 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~-----~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v 170 (258)
T 2pwy_A 96 PGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPH-----HLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGV 170 (258)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHH-----HHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHH-----HHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEE
Confidence 3579999999999988777643 5899998763 45555443 533 334556666778888999999
Q ss_pred EeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEE
Q 044932 377 HCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 377 hcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~ 434 (689)
++.. .++..+|.++.|+|+|||++++..+.. .....+...++..+|..+.
T Consensus 171 ~~~~------~~~~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~l~~~gf~~~~ 220 (258)
T 2pwy_A 171 ALDL------MEPWKVLEKAALALKPDRFLVAYLPNI--TQVLELVRAAEAHPFRLER 220 (258)
T ss_dssp EEES------SCGGGGHHHHHHHEEEEEEEEEEESCH--HHHHHHHHHHTTTTEEEEE
T ss_pred EECC------cCHHHHHHHHHHhCCCCCEEEEEeCCH--HHHHHHHHHHHHCCCceEE
Confidence 9731 245589999999999999999998763 2223355556667887643
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.6e-09 Score=109.17 Aligned_cols=138 Identities=13% Similarity=0.049 Sum_probs=81.0
Q ss_pred CCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCC---CCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLP---FPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LP---FpD~SFDlVhcs 379 (689)
+..+|||+|||+|.++..|+.. .|+++|+++.+. ..+++.|.++. .......|+.... ....+||+|++.
T Consensus 76 ~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l-~~l~~~a~~r~-nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 76 KGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVV-RELLLVAQRRP-NIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHH-HHHHHHHHHCT-TEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHH-HHHHHHhhhcC-CeEEEEcccccchhhhccccceEEEEec
Confidence 4579999999999998777642 599999988532 23456666652 2333344543321 124689999986
Q ss_pred cccccccccHHHHH-HHHHhccCCCcEEEEEcCCCch-------hHHHHHHHHHHhcceeEEEeecc-ccC-ceeEEEEE
Q 044932 380 GCSITWHAHGGKLL-LEMNRILRPSGYFILSTKHDSI-------EEEEALTTLTASICWNILAHKTD-EIS-EMGVKIYQ 449 (689)
Q Consensus 380 ~cli~W~~d~~~aL-~EI~RVLRPGG~fVIsdp~~~l-------e~~~~ie~La~~l~W~~v~~~~~-~~g-~~~i~Iwq 449 (689)
... .+...+| ..+.|+|||||+|+++..+... +........++..+++.+...+. ... .-.+.+.+
T Consensus 154 ~a~----~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~p~~~~h~~v~~~ 229 (232)
T 3id6_C 154 IAQ----PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDKDHAIVLSK 229 (232)
T ss_dssp CCC----TTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEECTTTCSSCEEEEEE
T ss_pred CCC----hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEeccCCCcCceEEEEEE
Confidence 432 2333444 4566699999999998543221 01122344555668887755432 111 12355565
Q ss_pred eC
Q 044932 450 KP 451 (689)
Q Consensus 450 Kp 451 (689)
|+
T Consensus 230 ~~ 231 (232)
T 3id6_C 230 YK 231 (232)
T ss_dssp EC
T ss_pred eC
Confidence 53
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.04 E-value=2.3e-10 Score=106.75 Aligned_cols=105 Identities=19% Similarity=0.163 Sum_probs=77.4
Q ss_pred CCCeEEEECCccchhHHHhhcCCeEEEEcCCcccHHHHHHHHHHcCC-CcEEecCCCCCCCC---CCCCcceEEeccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGF-PAVVSPLGNRRLPF---PSGVFDAIHCDGCSI 383 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~~V~gmDIsp~D~seamlq~A~eRGL-~~i~~~~dt~~LPF---pD~SFDlVhcs~cli 383 (689)
.+.+|||+|||. |. + |.++.|++.|.++.. ...+...+...+|+ ++++||+|+|..++
T Consensus 12 ~g~~vL~~~~g~-----------v~-v-----D~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l- 73 (176)
T 2ld4_A 12 AGQFVAVVWDKS-----------SP-V-----EALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP- 73 (176)
T ss_dssp TTSEEEEEECTT-----------SC-H-----HHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST-
T ss_pred CCCEEEEecCCc-----------ee-e-----eCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh-
Confidence 467999999996 11 3 455689999888732 23445556677777 89999999987654
Q ss_pred ccc-ccHHHHHHHHHhccCCCcEEEEEcCC-------CchhHHHHHHHHHHhcce
Q 044932 384 TWH-AHGGKLLLEMNRILRPSGYFILSTKH-------DSIEEEEALTTLTASICW 430 (689)
Q Consensus 384 ~W~-~d~~~aL~EI~RVLRPGG~fVIsdp~-------~~le~~~~ie~La~~l~W 430 (689)
+|. .+...+|.|++|+|||||+|++..+. .+......+..+++..+|
T Consensus 74 ~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 74 GSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp TCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred hhcccCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence 555 78899999999999999999997542 111123457788888899
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.04 E-value=8.6e-10 Score=114.79 Aligned_cols=115 Identities=13% Similarity=0.094 Sum_probs=79.5
Q ss_pred HHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCCC--cEEecCCC
Q 044932 289 VLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGFP--AVVSPLGN 363 (689)
Q Consensus 289 a~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL~--~i~~~~dt 363 (689)
...|.+.|.+.+.. . ...+|||||||+|.++..++.. .|+++|+++ .. ..+.+.+...++. ..+...+.
T Consensus 23 ~~~y~~ai~~~~~~-~---~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~-~~-~~a~~~~~~~~~~~~i~~~~~d~ 96 (328)
T 1g6q_1 23 TLSYRNAIIQNKDL-F---KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-II-EMAKELVELNGFSDKITLLRGKL 96 (328)
T ss_dssp HHHHHHHHHHHHHH-H---TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HH-HHHHHHHHHTTCTTTEEEEESCT
T ss_pred HHHHHHHHHhhHhh-c---CCCEEEEecCccHHHHHHHHHCCCCEEEEEChHH-HH-HHHHHHHHHcCCCCCEEEEECch
Confidence 34666666554432 1 3468999999999988877754 599999984 22 2333344445654 34455667
Q ss_pred CCCCCCCCCcceEEeccc--cccccccHHHHHHHHHhccCCCcEEEEE
Q 044932 364 RRLPFPSGVFDAIHCDGC--SITWHAHGGKLLLEMNRILRPSGYFILS 409 (689)
Q Consensus 364 ~~LPFpD~SFDlVhcs~c--li~W~~d~~~aL~EI~RVLRPGG~fVIs 409 (689)
..+++++++||+|+|... .+........+|.++.|+|||||+++..
T Consensus 97 ~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~ 144 (328)
T 1g6q_1 97 EDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPD 144 (328)
T ss_dssp TTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred hhccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEe
Confidence 788888899999998632 2222345678999999999999999743
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=3.8e-10 Score=116.15 Aligned_cols=98 Identities=16% Similarity=0.231 Sum_probs=69.5
Q ss_pred CCeEEEECCccch----hHHHhhc--------CCeEEEEcCCcccHHHHHHHHHHcC--------C--------------
Q 044932 309 IRVVLEIGSADLS----FVASLLA--------KEVLTLTVGLKDDLVDLAQVALERG--------F-------------- 354 (689)
Q Consensus 309 ~R~VLDVGCGtGs----faa~La~--------~~V~gmDIsp~D~seamlq~A~eRG--------L-------------- 354 (689)
..+|||+|||||. ++..|++ ..|+|+|+++ .|++.|++.- +
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~-----~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~ 180 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDT-----EVLEKARSGIYRLSELKTLSPQQLQRYFMRGTG 180 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCH-----HHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCT
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCH-----HHHHHHHhcCCchhhhhcCCHHHHHHHhhcccc
Confidence 4589999999997 4544442 2589999875 5777777631 1
Q ss_pred --------------CcEEecCCCCCCCCC-CCCcceEEeccccccccccH--HHHHHHHHhccCCCcEEEEEcCC
Q 044932 355 --------------PAVVSPLGNRRLPFP-SGVFDAIHCDGCSITWHAHG--GKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 355 --------------~~i~~~~dt~~LPFp-D~SFDlVhcs~cli~W~~d~--~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
...+...+....||+ .+.||+|+|..+++++ .+. ..++.+++++|+|||+|++....
T Consensus 181 ~~~~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf-~~~~~~~vl~~~~~~L~pgG~L~lg~sE 254 (274)
T 1af7_A 181 PHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF-DKTTQEDILRRFVPLLKPDGLLFAGHSE 254 (274)
T ss_dssp TSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS-CHHHHHHHHHHHGGGEEEEEEEEECTTC
T ss_pred CCCCceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhC-CHHHHHHHHHHHHHHhCCCcEEEEEecc
Confidence 122334455555676 6899999997665543 333 68999999999999999996554
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.03 E-value=4.4e-10 Score=108.38 Aligned_cols=129 Identities=18% Similarity=0.169 Sum_probs=84.0
Q ss_pred CCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHH----cCC---CcEEecCCCCCC-C-CCCCC-cce
Q 044932 309 IRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALE----RGF---PAVVSPLGNRRL-P-FPSGV-FDA 375 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~e----RGL---~~i~~~~dt~~L-P-FpD~S-FDl 375 (689)
..+|||+|||+|.++..++.. .|+++|+++. |++.|.+ .++ ...+...|...+ + +++++ ||+
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~-----~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~ 128 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKT-----VANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDV 128 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHH-----HHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEE
T ss_pred CCeEEEcCCccCHHHHHHHHccCCEEEEEECCHH-----HHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCE
Confidence 468999999999998875543 4899998864 4555443 355 234455554443 3 24678 999
Q ss_pred EEeccccccccccHHHHHHHH--HhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccccCceeEEEEEeCCC
Q 044932 376 IHCDGCSITWHAHGGKLLLEM--NRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEISEMGVKIYQKPES 453 (689)
Q Consensus 376 Vhcs~cli~W~~d~~~aL~EI--~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqKp~~ 453 (689)
|++... ++ ..+...++.++ .|+|+|||+|++...+..+.. + .-.|..+..+. .|...+.+|++...
T Consensus 129 I~~~~~-~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~~~~------~--~~~~~~~~~~~--yG~~~~~~~~~~~~ 196 (201)
T 2ift_A 129 VFLDPP-FH-FNLAEQAISLLCENNWLKPNALIYVETEKDKPLI------T--PENWTLLKEKT--TGIVSYRLYQNLEH 196 (201)
T ss_dssp EEECCC-SS-SCHHHHHHHHHHHTTCEEEEEEEEEEEESSSCCC------C--CTTEEEEEEEE--ETTEEEEEEEECC-
T ss_pred EEECCC-CC-CccHHHHHHHHHhcCccCCCcEEEEEECCCCCcc------c--cchhHHHHHHh--cCCEEEEEEecchh
Confidence 998643 22 24556788888 789999999999876543111 1 13577665433 35667888887654
Q ss_pred c
Q 044932 454 N 454 (689)
Q Consensus 454 ~ 454 (689)
+
T Consensus 197 ~ 197 (201)
T 2ift_A 197 H 197 (201)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.02 E-value=8.8e-10 Score=112.29 Aligned_cols=99 Identities=13% Similarity=0.053 Sum_probs=70.0
Q ss_pred CCCeEEEECCcc---chhHHHhh----cCCeEEEEcCCcccHHHHHHHHHHcC---CCcEEecCCCCCC-----------
Q 044932 308 NIRVVLEIGSAD---LSFVASLL----AKEVLTLTVGLKDDLVDLAQVALERG---FPAVVSPLGNRRL----------- 366 (689)
Q Consensus 308 ~~R~VLDVGCGt---Gsfaa~La----~~~V~gmDIsp~D~seamlq~A~eRG---L~~i~~~~dt~~L----------- 366 (689)
..++|||||||+ |.++..+. ...|+++|++| .|++.|+++- -...+...|...+
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp-----~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~ 151 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDP-----MVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRR 151 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSH-----HHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECCh-----HHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhc
Confidence 357999999999 98765553 24699999886 4677766641 1233444444321
Q ss_pred CCCCCCcceEEecccccccccc--HHHHHHHHHhccCCCcEEEEEcCC
Q 044932 367 PFPSGVFDAIHCDGCSITWHAH--GGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 367 PFpD~SFDlVhcs~cli~W~~d--~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
.|+..+||+|++..++ ||..+ ...+|.++.|+|+|||+|+|++..
T Consensus 152 ~~d~~~~d~v~~~~vl-h~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~ 198 (274)
T 2qe6_A 152 MIDFSRPAAIMLVGML-HYLSPDVVDRVVGAYRDALAPGSYLFMTSLV 198 (274)
T ss_dssp HCCTTSCCEEEETTTG-GGSCTTTHHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred cCCCCCCEEEEEechh-hhCCcHHHHHHHHHHHHhCCCCcEEEEEEec
Confidence 1333489999987554 55544 789999999999999999999754
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.4e-09 Score=111.11 Aligned_cols=140 Identities=19% Similarity=0.256 Sum_probs=89.7
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCC--cEEecCCCCCCCCCCCCcceEEeccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFP--AVVSPLGNRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~--~i~~~~dt~~LPFpD~SFDlVhcs~c 381 (689)
...+|||||||+|.++..|+.. .++++|+ +... ....+.+...++. ..+...|... +++. .||+|++..+
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~v 258 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTV-DTARSYLKDEGLSDRVDVVEGDFFE-PLPR-KADAIILSFV 258 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHH-HHHHHHHHHTTCTTTEEEEECCTTS-CCSS-CEEEEEEESC
T ss_pred cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHH-HHHHHHHHhcCCCCceEEEeCCCCC-CCCC-CccEEEEccc
Confidence 4579999999999998887743 4677777 6422 1122222234553 3344445433 4554 4999999877
Q ss_pred ccccccc-HHHHHHHHHhccCCCcEEEEEcCC--C-----ch----------------hHHHHHHHHHHhcceeEEEeec
Q 044932 382 SITWHAH-GGKLLLEMNRILRPSGYFILSTKH--D-----SI----------------EEEEALTTLTASICWNILAHKT 437 (689)
Q Consensus 382 li~W~~d-~~~aL~EI~RVLRPGG~fVIsdp~--~-----~l----------------e~~~~ie~La~~l~W~~v~~~~ 437 (689)
+.+|... ...+|.++.|+|+|||+|+|.+.. . .. ...+.+..+++..+|+.+....
T Consensus 259 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 338 (360)
T 1tw3_A 259 LLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQ 338 (360)
T ss_dssp GGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEEEe
Confidence 6665432 258999999999999999998643 1 00 0124688899999998875543
Q ss_pred cccCc-----eeEEEEEeCC
Q 044932 438 DEISE-----MGVKIYQKPE 452 (689)
Q Consensus 438 ~~~g~-----~~i~IwqKp~ 452 (689)
.. +. ..+..++|+.
T Consensus 339 ~~-~~~~~~~~~~i~~~~~~ 357 (360)
T 1tw3_A 339 LP-SPTIPYDLSLLVLAPAA 357 (360)
T ss_dssp EE-CSSSSCEEEEEEEEEC-
T ss_pred CC-CCcccCccEEEEEEeCC
Confidence 21 22 4577777763
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.02 E-value=9.4e-10 Score=110.79 Aligned_cols=113 Identities=12% Similarity=0.089 Sum_probs=80.9
Q ss_pred CCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHc-----CCC-cEEecCCCCCCCCCCCCcceE
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALER-----GFP-AVVSPLGNRRLPFPSGVFDAI 376 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eR-----GL~-~i~~~~dt~~LPFpD~SFDlV 376 (689)
...+|||+|||+|.++..|+.. .|+++|+++ .+++.|.++ |+. ..+...+... ++++++||+|
T Consensus 110 ~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~fD~V 183 (275)
T 1yb2_A 110 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDE-----DNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQMYDAV 183 (275)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCH-----HHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCCEEEE
T ss_pred CcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCH-----HHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCCccEE
Confidence 4579999999999988877643 589999876 355555443 443 3344555544 6788899999
Q ss_pred EeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEE
Q 044932 377 HCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 377 hcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~ 434 (689)
++. .+++..+|.++.|+|||||++++.++... ....+...+...+|..+.
T Consensus 184 i~~------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~--~~~~~~~~l~~~Gf~~~~ 233 (275)
T 1yb2_A 184 IAD------IPDPWNHVQKIASMMKPGSVATFYLPNFD--QSEKTVLSLSASGMHHLE 233 (275)
T ss_dssp EEC------CSCGGGSHHHHHHTEEEEEEEEEEESSHH--HHHHHHHHSGGGTEEEEE
T ss_pred EEc------CcCHHHHHHHHHHHcCCCCEEEEEeCCHH--HHHHHHHHHHHCCCeEEE
Confidence 973 23556899999999999999999987632 223455666777887654
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=3.1e-10 Score=123.91 Aligned_cols=102 Identities=9% Similarity=-0.023 Sum_probs=71.3
Q ss_pred CCCeEEEECCccchhHHHhh---cCC-eEEEEcCCcccHH--HHHHH----HHHcCC---CcEEecCCCCCCCCCC--CC
Q 044932 308 NIRVVLEIGSADLSFVASLL---AKE-VLTLTVGLKDDLV--DLAQV----ALERGF---PAVVSPLGNRRLPFPS--GV 372 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La---~~~-V~gmDIsp~D~se--amlq~----A~eRGL---~~i~~~~dt~~LPFpD--~S 372 (689)
...+|||||||+|.++..++ ... |+|+|+++..... .+++. +...|+ ...+...|...+||++ .+
T Consensus 173 ~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~~~ 252 (438)
T 3uwp_A 173 DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIAN 252 (438)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHHHT
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccccCC
Confidence 45789999999999877665 333 9999998742221 11111 122354 2345566777888864 48
Q ss_pred cceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 373 FDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 373 FDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
||+|++.. .+ |.++....|.|+.|+|||||+|++.+.
T Consensus 253 aDVVf~Nn-~~-F~pdl~~aL~Ei~RvLKPGGrIVssE~ 289 (438)
T 3uwp_A 253 TSVIFVNN-FA-FGPEVDHQLKERFANMKEGGRIVSSKP 289 (438)
T ss_dssp CSEEEECC-TT-CCHHHHHHHHHHHTTSCTTCEEEESSC
T ss_pred ccEEEEcc-cc-cCchHHHHHHHHHHcCCCCcEEEEeec
Confidence 99999753 33 346778899999999999999999864
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.9e-09 Score=109.30 Aligned_cols=136 Identities=10% Similarity=-0.017 Sum_probs=88.7
Q ss_pred CeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCC--CcEEecCCCCCCCCCCCCcceEEeccccc
Q 044932 310 RVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGF--PAVVSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL--~~i~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
.+|||||||+|.++..++.. .++++|+ |.....+. +.+...++ ...+...+... |++ .+||+|+|..++.
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl~ 244 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVAR-DNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSRIIG 244 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHH-HHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEESCGG
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHH-HHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEchhcc
Confidence 79999999999998887743 5899999 75442221 22222222 23344445444 666 6899999987776
Q ss_pred cccc-cHHHHHHHHHhccCCCcEEEEEcCC-----Cch-----------------hHHHHHHHHHHhcceeEEEeecccc
Q 044932 384 TWHA-HGGKLLLEMNRILRPSGYFILSTKH-----DSI-----------------EEEEALTTLTASICWNILAHKTDEI 440 (689)
Q Consensus 384 ~W~~-d~~~aL~EI~RVLRPGG~fVIsdp~-----~~l-----------------e~~~~ie~La~~l~W~~v~~~~~~~ 440 (689)
+|.. +...+|.++.|+|+|||+++|.+.. ... ....++..+++..+|+.+..... .
T Consensus 245 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~ 323 (334)
T 2ip2_A 245 DLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVDL-P 323 (334)
T ss_dssp GCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEE-T
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEEEEC-C
Confidence 6643 2348999999999999999998632 000 01346788899999987654331 2
Q ss_pred CceeEEEEEe
Q 044932 441 SEMGVKIYQK 450 (689)
Q Consensus 441 g~~~i~IwqK 450 (689)
+...+...+|
T Consensus 324 ~~~~~i~~~~ 333 (334)
T 2ip2_A 324 METRMIVAAR 333 (334)
T ss_dssp TTEEEEEEEE
T ss_pred CCCEEEEEEe
Confidence 3344555554
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.00 E-value=1e-09 Score=107.98 Aligned_cols=112 Identities=15% Similarity=0.176 Sum_probs=79.2
Q ss_pred CCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHH----cCCCc--EEecCCCCCCCCCCCCcceE
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALE----RGFPA--VVSPLGNRRLPFPSGVFDAI 376 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~e----RGL~~--i~~~~dt~~LPFpD~SFDlV 376 (689)
...+|||+|||+|.++..++.. .|+++|+++. +++.|.+ .|+.. .+...|.. .++++++||+|
T Consensus 93 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~-----~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~D~v 166 (255)
T 3mb5_A 93 PGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIRED-----FAKLAWENIKWAGFDDRVTIKLKDIY-EGIEEENVDHV 166 (255)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHH-----HHHHHHHHHHHHTCTTTEEEECSCGG-GCCCCCSEEEE
T ss_pred CCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHH-----HHHHHHHHHHHcCCCCceEEEECchh-hccCCCCcCEE
Confidence 4578999999999998877643 4889998763 4455444 36653 34455544 34888999999
Q ss_pred EeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcc--eeEE
Q 044932 377 HCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASIC--WNIL 433 (689)
Q Consensus 377 hcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~--W~~v 433 (689)
++.. .++..+|.++.|+|+|||++++..+.. .....+...++..+ |..+
T Consensus 167 ~~~~------~~~~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~l~~~g~~f~~~ 217 (255)
T 3mb5_A 167 ILDL------PQPERVVEHAAKALKPGGFFVAYTPCS--NQVMRLHEKLREFKDYFMKP 217 (255)
T ss_dssp EECS------SCGGGGHHHHHHHEEEEEEEEEEESSH--HHHHHHHHHHHHTGGGBSCC
T ss_pred EECC------CCHHHHHHHHHHHcCCCCEEEEEECCH--HHHHHHHHHHHHcCCCcccc
Confidence 9742 245579999999999999999988753 22234556667777 7554
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.6e-09 Score=114.29 Aligned_cols=119 Identities=18% Similarity=0.192 Sum_probs=82.6
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
...+|||||||+|.++..|+.. .++++|+ | .+++.|.++ ....+...|... |+|++ |+|++..++.
T Consensus 203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-----~~~~~a~~~-~~v~~~~~d~~~-~~p~~--D~v~~~~vlh 272 (368)
T 3reo_A 203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-P-----HVIQDAPAF-SGVEHLGGDMFD-GVPKG--DAIFIKWICH 272 (368)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H-----HHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCGG
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-H-----HHHHhhhhc-CCCEEEecCCCC-CCCCC--CEEEEechhh
Confidence 4679999999999999888752 4677776 3 455555433 123344445444 77754 9999988776
Q ss_pred cccc-cHHHHHHHHHhccCCCcEEEEEcCC--C----ch---------------------hHHHHHHHHHHhcceeEEEe
Q 044932 384 TWHA-HGGKLLLEMNRILRPSGYFILSTKH--D----SI---------------------EEEEALTTLTASICWNILAH 435 (689)
Q Consensus 384 ~W~~-d~~~aL~EI~RVLRPGG~fVIsdp~--~----~l---------------------e~~~~ie~La~~l~W~~v~~ 435 (689)
+|.. +...+|++++|+|||||+|+|.+.. . .. ....++..+++..+|+.+..
T Consensus 273 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~ 352 (368)
T 3reo_A 273 DWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKV 352 (368)
T ss_dssp GBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeEE
Confidence 6653 3357899999999999999997632 0 00 01245788899999988754
Q ss_pred e
Q 044932 436 K 436 (689)
Q Consensus 436 ~ 436 (689)
.
T Consensus 353 ~ 353 (368)
T 3reo_A 353 A 353 (368)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=98.97 E-value=2.1e-09 Score=112.72 Aligned_cols=114 Identities=15% Similarity=0.161 Sum_probs=79.5
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCCC--cEEecCCCC
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGFP--AVVSPLGNR 364 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL~--~i~~~~dt~ 364 (689)
..|.+.|.+.+.. . ...+|||||||+|.++..++.. .|+++|+++ +. ..+.+.+...|+. ..+...+..
T Consensus 36 ~~y~~~i~~~l~~-~---~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~-~~a~~~~~~~~l~~~v~~~~~d~~ 109 (348)
T 2y1w_A 36 GTYQRAILQNHTD-F---KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MA-QHAEVLVKSNNLTDRIVVIPGKVE 109 (348)
T ss_dssp HHHHHHHHHTGGG-T---TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HH-HHHHHHHHHTTCTTTEEEEESCTT
T ss_pred HHHHHHHHhcccc-C---CcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HH-HHHHHHHHHcCCCCcEEEEEcchh
Confidence 4566666665542 1 3579999999999998877754 589999985 32 2333334444653 344556667
Q ss_pred CCCCCCCCcceEEecccccccc-ccHHHHHHHHHhccCCCcEEEEEc
Q 044932 365 RLPFPSGVFDAIHCDGCSITWH-AHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 365 ~LPFpD~SFDlVhcs~cli~W~-~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
.++++ ++||+|++.....++. +.....|.++.|+|||||++++..
T Consensus 110 ~~~~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 110 EVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp TCCCS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred hCCCC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 77777 6899999875555543 345678889999999999999654
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-09 Score=105.63 Aligned_cols=128 Identities=10% Similarity=0.088 Sum_probs=83.9
Q ss_pred CCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHH----cCC-CcEEecCCCCC-CCCCCCCcceEEec
Q 044932 309 IRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALE----RGF-PAVVSPLGNRR-LPFPSGVFDAIHCD 379 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~e----RGL-~~i~~~~dt~~-LPFpD~SFDlVhcs 379 (689)
..+|||+|||+|.++..++.. .|+++|+++. |++.|++ .++ ...+...|... +++++++||+|++.
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~-----~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~ 129 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRA-----VSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVD 129 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHH-----HHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEEC
T ss_pred CCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHH-----HHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEEC
Confidence 468999999999998875543 5899998864 4555443 355 33455555544 56777899999986
Q ss_pred cccccccccHHHHHHHHHh--ccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccccCceeEEEEEeCC
Q 044932 380 GCSITWHAHGGKLLLEMNR--ILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEISEMGVKIYQKPE 452 (689)
Q Consensus 380 ~cli~W~~d~~~aL~EI~R--VLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqKp~ 452 (689)
.. ++ ......++.++.+ +|+|||+|++......... . ..-.|..+..+. .+...+.+|++..
T Consensus 130 ~p-~~-~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~~~~~-----~--~~~~~~~~~~~~--~g~~~~~~~~~~~ 193 (202)
T 2fpo_A 130 PP-FR-RGLLEETINLLEDNGWLADEALIYVESEVENGLP-----T--VPANWSLHREKV--AGQVAYRLYQREA 193 (202)
T ss_dssp CS-SS-TTTHHHHHHHHHHTTCEEEEEEEEEEEEGGGCSC-----C--CCTTEEEEEEEE--ETTEEEEEEEECC
T ss_pred CC-CC-CCcHHHHHHHHHhcCccCCCcEEEEEECCCcccc-----c--cCCcceEEeeec--cCCEEEEEEEECC
Confidence 43 22 2355678888865 6999999999876532110 0 113677654432 3566688888743
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.5e-09 Score=113.10 Aligned_cols=120 Identities=12% Similarity=0.099 Sum_probs=80.3
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHH--HcCCC--cEEecCCCCCCCCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVAL--ERGFP--AVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~--eRGL~--~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
...+|||||||+|.++..|+.. .++++|++ .++..+. ..++. ..+...|.. .++| +||+|++.
T Consensus 184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~------~~~~~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v~~~ 254 (348)
T 3lst_A 184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA------EVVARHRLDAPDVAGRWKVVEGDFL-REVP--HADVHVLK 254 (348)
T ss_dssp SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH------HHHTTCCCCCGGGTTSEEEEECCTT-TCCC--CCSEEEEE
T ss_pred CCceEEEECCccCHHHHHHHHHCCCCEEEEecCH------HHhhcccccccCCCCCeEEEecCCC-CCCC--CCcEEEEe
Confidence 4679999999999999888752 35667762 2222110 11222 234444443 4566 89999998
Q ss_pred cccccccccH--HHHHHHHHhccCCCcEEEEEcCC------Cch----------------hHHHHHHHHHHhcceeEEEe
Q 044932 380 GCSITWHAHG--GKLLLEMNRILRPSGYFILSTKH------DSI----------------EEEEALTTLTASICWNILAH 435 (689)
Q Consensus 380 ~cli~W~~d~--~~aL~EI~RVLRPGG~fVIsdp~------~~l----------------e~~~~ie~La~~l~W~~v~~ 435 (689)
.++.+|. +. ..+|.++.|+|||||+|+|.+.. ... ...+++..+++..+|+.+..
T Consensus 255 ~vlh~~~-d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 333 (348)
T 3lst_A 255 RILHNWG-DEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRV 333 (348)
T ss_dssp SCGGGSC-HHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEEE
T ss_pred hhccCCC-HHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEEE
Confidence 7776654 33 68999999999999999998631 000 02356888999999988765
Q ss_pred ec
Q 044932 436 KT 437 (689)
Q Consensus 436 ~~ 437 (689)
..
T Consensus 334 ~~ 335 (348)
T 3lst_A 334 VG 335 (348)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2.9e-09 Score=103.12 Aligned_cols=132 Identities=14% Similarity=0.108 Sum_probs=78.5
Q ss_pred CCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHc---CCCcEEecCCCCC----CCCCCCCcce
Q 044932 308 NIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALER---GFPAVVSPLGNRR----LPFPSGVFDA 375 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eR---GL~~i~~~~dt~~----LPFpD~SFDl 375 (689)
...+|||+|||+|.++..|+. ..|+++|+++. +++.+.++ .-...+...+... .+++ .+||+
T Consensus 73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~-----~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~ 146 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPR-----VLRELVPIVEERRNIVPILGDATKPEEYRALV-PKVDV 146 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHH-----HHHHHHHHHSSCTTEEEEECCTTCGGGGTTTC-CCEEE
T ss_pred CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHH-----HHHHHHHHHhccCCCEEEEccCCCcchhhccc-CCceE
Confidence 356899999999999887763 35899998863 34333322 1123333444443 2233 68999
Q ss_pred EEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCc--------hhHHHHHHHHHHhcceeEEEeeccc-c-CceeE
Q 044932 376 IHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDS--------IEEEEALTTLTASICWNILAHKTDE-I-SEMGV 445 (689)
Q Consensus 376 Vhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~--------le~~~~ie~La~~l~W~~v~~~~~~-~-g~~~i 445 (689)
|++... . ......+|.++.|+|||||+|++...... ......+..+ ... |+.+...... . ...++
T Consensus 147 v~~~~~-~--~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~-f~~~~~~~~~~~~~~~~~ 221 (227)
T 1g8a_A 147 IFEDVA-Q--PTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEY-FEVIERLNLEPYEKDHAL 221 (227)
T ss_dssp EEECCC-S--TTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTT-SEEEEEEECTTTSSSEEE
T ss_pred EEECCC-C--HhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHH-Hhh-ceeeeEeccCcccCCCEE
Confidence 997532 1 12223459999999999999999742211 0112456666 444 8776543321 1 12346
Q ss_pred EEEEe
Q 044932 446 KIYQK 450 (689)
Q Consensus 446 ~IwqK 450 (689)
++++|
T Consensus 222 ~~~~~ 226 (227)
T 1g8a_A 222 FVVRK 226 (227)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 66665
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.7e-09 Score=107.72 Aligned_cols=94 Identities=20% Similarity=0.162 Sum_probs=70.7
Q ss_pred CCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHc-----C--C-CcEEecCCCCCCCCCCCCcc
Q 044932 308 NIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALER-----G--F-PAVVSPLGNRRLPFPSGVFD 374 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eR-----G--L-~~i~~~~dt~~LPFpD~SFD 374 (689)
...+|||+|||+|.++.+|+. ..|+++|+++. +++.|.++ | . ...+...+...+++++++||
T Consensus 99 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~-----~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D 173 (280)
T 1i9g_A 99 PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRAD-----HAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVD 173 (280)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHH-----HHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEE
T ss_pred CCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHH-----HHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCcee
Confidence 356899999999999887764 24899998763 44444433 3 2 23455666677788889999
Q ss_pred eEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 375 AIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 375 lVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+|++.. .++..+|.++.|+|+|||++++..+.
T Consensus 174 ~v~~~~------~~~~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 174 RAVLDM------LAPWEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp EEEEES------SCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred EEEECC------cCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 999732 24558999999999999999999876
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-09 Score=107.31 Aligned_cols=98 Identities=18% Similarity=0.238 Sum_probs=67.7
Q ss_pred CCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc------------CCCc-EEecCCCCC-CC--C
Q 044932 309 IRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER------------GFPA-VVSPLGNRR-LP--F 368 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR------------GL~~-i~~~~dt~~-LP--F 368 (689)
..+|||||||+|.++..|+.. .|+|+|+++. +++.|.++ ++.. .+...|... |+ |
T Consensus 50 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~-----~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~ 124 (246)
T 2vdv_E 50 KVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQ-----VTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFF 124 (246)
T ss_dssp CEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHH-----HHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTS
T ss_pred CCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHH-----HHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhc
Confidence 468999999999998887742 5999999864 44444321 5543 344555554 66 8
Q ss_pred CCCCcceEEecccccccccc--------HHHHHHHHHhccCCCcEEEEEcCC
Q 044932 369 PSGVFDAIHCDGCSITWHAH--------GGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 369 pD~SFDlVhcs~cli~W~~d--------~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
++++||.|+..... +|... ...+|.++.|+|+|||+|++.+..
T Consensus 125 ~~~~~d~v~~~~p~-p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~ 175 (246)
T 2vdv_E 125 EKGQLSKMFFCFPD-PHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDV 175 (246)
T ss_dssp CTTCEEEEEEESCC-CC------CSSCCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cccccCEEEEECCC-cccccchhHHhhccHHHHHHHHHHcCCCCEEEEEecc
Confidence 88999999754211 22111 047999999999999999997654
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.95 E-value=9.8e-10 Score=106.28 Aligned_cols=94 Identities=16% Similarity=0.056 Sum_probs=67.0
Q ss_pred CCCeEEEECCccchhHHHhhc--CCeEEEEcCCcccHHHHHHHHHHcCC---CcEEecCCCCCCCCCCCCcceEEecccc
Q 044932 308 NIRVVLEIGSADLSFVASLLA--KEVLTLTVGLKDDLVDLAQVALERGF---PAVVSPLGNRRLPFPSGVFDAIHCDGCS 382 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~--~~V~gmDIsp~D~seamlq~A~eRGL---~~i~~~~dt~~LPFpD~SFDlVhcs~cl 382 (689)
...+|||+|||+|.++..|+. ..|+++|+++ .+++.|.++.. ...+...+......++++||+|++..++
T Consensus 70 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~-----~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~ 144 (231)
T 1vbf_A 70 KGQKVLEIGTGIGYYTALIAEIVDKVVSVEINE-----KMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATA 144 (231)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCH-----HHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBB
T ss_pred CCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCH-----HHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECCcH
Confidence 356899999999999888875 3589999875 46666666511 3334444544422346899999987654
Q ss_pred ccccccHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 383 ITWHAHGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 383 i~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
.+ . ..++.|+|||||++++..+..
T Consensus 145 ~~-~------~~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 145 PT-L------LCKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp SS-C------CHHHHHTEEEEEEEEEEECSS
T ss_pred HH-H------HHHHHHHcCCCcEEEEEEcCC
Confidence 33 2 248999999999999997753
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.95 E-value=1e-09 Score=104.69 Aligned_cols=93 Identities=19% Similarity=0.090 Sum_probs=68.2
Q ss_pred CCCeEEEECCccchhHHHhhc--CCeEEEEcCCcccHHHHHHHHHHc----CCC-cEEecCCCCCCCCCCCCcceEEecc
Q 044932 308 NIRVVLEIGSADLSFVASLLA--KEVLTLTVGLKDDLVDLAQVALER----GFP-AVVSPLGNRRLPFPSGVFDAIHCDG 380 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~--~~V~gmDIsp~D~seamlq~A~eR----GL~-~i~~~~dt~~LPFpD~SFDlVhcs~ 380 (689)
...+|||+|||+|.++..|+. ..|+++|+++ .+++.|.++ ++. ..+...+....++++++||+|++..
T Consensus 77 ~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~-----~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~ 151 (210)
T 3lbf_A 77 PQSRVLEIGTGSGYQTAILAHLVQHVCSVERIK-----GLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTA 151 (210)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCH-----HHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESS
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCH-----HHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEcc
Confidence 457899999999999888775 3589999886 355555443 554 3344556556666678999999875
Q ss_pred ccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 381 CSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 381 cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+. ++.. .++.++|||||+|++..+.
T Consensus 152 ~~-~~~~------~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 152 AP-PEIP------TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp BC-SSCC------THHHHTEEEEEEEEEEECS
T ss_pred ch-hhhh------HHHHHhcccCcEEEEEEcC
Confidence 44 3232 2789999999999999876
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.8e-09 Score=105.24 Aligned_cols=151 Identities=11% Similarity=0.060 Sum_probs=90.9
Q ss_pred hHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHH----HcCCC---
Q 044932 288 GVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVAL----ERGFP--- 355 (689)
Q Consensus 288 ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~----eRGL~--- 355 (689)
....++..|....+ .....+|||||||+|.++..|+. ..|+++|+++. +++.|+ ..|+.
T Consensus 40 ~~~~~l~~l~~~~~----~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~-----~~~~a~~~~~~~g~~~~~ 110 (221)
T 3dr5_A 40 MTGQLLTTLAATTN----GNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESE-----HQRQAKALFREAGYSPSR 110 (221)
T ss_dssp HHHHHHHHHHHHSC----CTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHH-----HHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHhhC----CCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHH-----HHHHHHHHHHHcCCCcCc
Confidence 33455555554432 11234899999999998887764 24899998874 444443 34665
Q ss_pred cEEecCCCCC-CC-CCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCC--------ch-hHHHHHHHH
Q 044932 356 AVVSPLGNRR-LP-FPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHD--------SI-EEEEALTTL 424 (689)
Q Consensus 356 ~i~~~~dt~~-LP-FpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~--------~l-e~~~~ie~L 424 (689)
..+...++.. ++ +++++||+|++... ..+...+|.++.|+|||||+|++.+... .. .....+.++
T Consensus 111 i~~~~gda~~~l~~~~~~~fD~V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~ 186 (221)
T 3dr5_A 111 VRFLLSRPLDVMSRLANDSYQLVFGQVS----PMDLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDA 186 (221)
T ss_dssp EEEECSCHHHHGGGSCTTCEEEEEECCC----TTTHHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHH
T ss_pred EEEEEcCHHHHHHHhcCCCcCeEEEcCc----HHHHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHH
Confidence 3344444322 32 44789999987532 2345579999999999999999965320 01 111234444
Q ss_pred HHhccee----EEEeeccccCceeEEEEEeCCCch
Q 044932 425 TASICWN----ILAHKTDEISEMGVKIYQKPESND 455 (689)
Q Consensus 425 a~~l~W~----~v~~~~~~~g~~~i~IwqKp~~~~ 455 (689)
.+.+... .+.. . -+.|+.+.+|++.+.
T Consensus 187 ~~~l~~~~~~~~~~l---p-~gdGl~~~~~~~~~~ 217 (221)
T 3dr5_A 187 DEYIRSIEGAHVARL---P-LGAGLTVVTKALEHH 217 (221)
T ss_dssp HHHHTTCTTEEEEEE---S-STTCEEEEEECCCCC
T ss_pred HHHHhhCCCeeEEEe---e-ccchHHHHHHHHHhh
Confidence 4444432 2211 1 134689999988754
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=5.6e-10 Score=121.47 Aligned_cols=93 Identities=19% Similarity=0.189 Sum_probs=69.9
Q ss_pred CCCeEEEECCc------cchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCC------C
Q 044932 308 NIRVVLEIGSA------DLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFP------S 370 (689)
Q Consensus 308 ~~R~VLDVGCG------tGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFp------D 370 (689)
...+||||||| +|..+..++. ..|+++|+++.+. ...-...+...|...+||. +
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf~~~l~~~d 286 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEFLDRIARRY 286 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecccccchhhhhhccc
Confidence 35799999999 6665555442 3699999998631 1222344566777888887 7
Q ss_pred CCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 371 GVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 371 ~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
++||+|+|..+ |+..+...+|.|+.|+|||||+|++.+.
T Consensus 287 ~sFDlVisdgs--H~~~d~~~aL~el~rvLKPGGvlVi~Dl 325 (419)
T 3sso_A 287 GPFDIVIDDGS--HINAHVRTSFAALFPHVRPGGLYVIEDM 325 (419)
T ss_dssp CCEEEEEECSC--CCHHHHHHHHHHHGGGEEEEEEEEEECG
T ss_pred CCccEEEECCc--ccchhHHHHHHHHHHhcCCCeEEEEEec
Confidence 99999998643 3446778999999999999999999864
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.94 E-value=4.3e-09 Score=110.02 Aligned_cols=122 Identities=16% Similarity=0.012 Sum_probs=82.7
Q ss_pred CCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHcCCC-cEEecCCCCCCCCCCCCcceEEeccc
Q 044932 308 NIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALERGFP-AVVSPLGNRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eRGL~-~i~~~~dt~~LPFpD~SFDlVhcs~c 381 (689)
...+|||+|||+|.++..++. ..|+|+|+++... ..+.+.+...|+. ..+...|...+|++..+||+|+|..-
T Consensus 203 ~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i-~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~npP 281 (354)
T 3tma_A 203 PGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRL-GLAREAALASGLSWIRFLRADARHLPRFFPEVDRILANPP 281 (354)
T ss_dssp TTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHH-HHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECCC
T ss_pred CCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHH-HHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEECCC
Confidence 457899999999998766553 5699999987422 1222223334654 45566777888888788999998421
Q ss_pred c-------ccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEee
Q 044932 382 S-------ITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHK 436 (689)
Q Consensus 382 l-------i~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~ 436 (689)
. .++......++.++.|+|||||.+++.++... .+..+.+ .+|+.....
T Consensus 282 yg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~-----~~~~~~~-~g~~~~~~~ 337 (354)
T 3tma_A 282 HGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPA-----LLKRALP-PGFALRHAR 337 (354)
T ss_dssp SCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHH-----HHHHHCC-TTEEEEEEE
T ss_pred CcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHH-----HHHHHhh-cCcEEEEEE
Confidence 1 01111125789999999999999999988632 2445666 888876543
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=6.1e-11 Score=115.70 Aligned_cols=95 Identities=11% Similarity=-0.008 Sum_probs=68.8
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHH----HcCC--CcEEecCCCCCCCCCCCCcceEEecc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVAL----ERGF--PAVVSPLGNRRLPFPSGVFDAIHCDG 380 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~----eRGL--~~i~~~~dt~~LPFpD~SFDlVhcs~ 380 (689)
..+|||+|||+|.++..|+.. .|+++|+++. +++.|. ..++ ...+...|...++ ++++||+|++..
T Consensus 79 ~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~ 152 (241)
T 3gdh_A 79 CDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPV-----KIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSP 152 (241)
T ss_dssp CSEEEETTCTTSHHHHHHHHTTCEEEEEESCHH-----HHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECC
T ss_pred CCEEEECccccCHHHHHHHHcCCEEEEEECCHH-----HHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECC
Confidence 468999999999999888865 5899999874 444443 3465 2345555655555 568999999864
Q ss_pred ccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 381 CSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 381 cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
.. ++..+....+.++.|+|+|||++++..
T Consensus 153 ~~-~~~~~~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 153 PW-GGPDYATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp CC-SSGGGGGSSSBCTTTSCSSCHHHHHHH
T ss_pred Cc-CCcchhhhHHHHHHhhcCCcceeHHHH
Confidence 33 334445557889999999999987764
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=3.3e-09 Score=110.46 Aligned_cols=117 Identities=9% Similarity=0.102 Sum_probs=80.9
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
...+|||||||+|.++..|+.. .++++|+ | .+++.|.+.. ...+...|... ++|+ ||+|++..++.
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-----~~~~~a~~~~-~v~~~~~d~~~-~~p~--~D~v~~~~~lh 257 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-P-----QVVENLSGSN-NLTYVGGDMFT-SIPN--ADAVLLKYILH 257 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H-----HHHTTCCCBT-TEEEEECCTTT-CCCC--CSEEEEESCGG
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-H-----HHHhhcccCC-CcEEEeccccC-CCCC--ccEEEeehhhc
Confidence 3579999999999999888743 4888887 5 4565554321 13344445433 6663 99999987776
Q ss_pred cccccHH--HHHHHHHhccCC---CcEEEEEcCC----C-c---h-----------------hHHHHHHHHHHhcceeEE
Q 044932 384 TWHAHGG--KLLLEMNRILRP---SGYFILSTKH----D-S---I-----------------EEEEALTTLTASICWNIL 433 (689)
Q Consensus 384 ~W~~d~~--~aL~EI~RVLRP---GG~fVIsdp~----~-~---l-----------------e~~~~ie~La~~l~W~~v 433 (689)
+|. +.. .+|+++.|+||| ||+|+|.+.. . . . ....++..+++..+|+.+
T Consensus 258 ~~~-d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 336 (352)
T 1fp2_A 258 NWT-DKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHY 336 (352)
T ss_dssp GSC-HHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEE
T ss_pred cCC-HHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCCee
Confidence 653 444 899999999999 9999998631 1 0 0 012457778888888766
Q ss_pred Ee
Q 044932 434 AH 435 (689)
Q Consensus 434 ~~ 435 (689)
..
T Consensus 337 ~~ 338 (352)
T 1fp2_A 337 KI 338 (352)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.5e-09 Score=101.12 Aligned_cols=92 Identities=13% Similarity=0.157 Sum_probs=63.6
Q ss_pred CCeEEEECCccchhHHHhhc------CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCC---------------
Q 044932 309 IRVVLEIGSADLSFVASLLA------KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLP--------------- 367 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~------~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LP--------------- 367 (689)
..+|||+|||+|.++.+|+. ..|+++|+++... ..+ ..+...+...++
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~---------~~~--v~~~~~d~~~~~~~~~~~~~~i~~~~~ 91 (201)
T 2plw_A 23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDP---------IPN--VYFIQGEIGKDNMNNIKNINYIDNMNN 91 (201)
T ss_dssp TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCC---------CTT--CEEEECCTTTTSSCCC-----------
T ss_pred CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCC---------CCC--ceEEEccccchhhhhhccccccccccc
Confidence 46899999999999887764 2489999998310 012 223344555555
Q ss_pred ----------CCCCCcceEEecccccccc----ccH-------HHHHHHHHhccCCCcEEEEEcCC
Q 044932 368 ----------FPSGVFDAIHCDGCSITWH----AHG-------GKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 368 ----------FpD~SFDlVhcs~cli~W~----~d~-------~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
|++++||+|+|... .+|. .+. ..+|.++.|+|||||.|++....
T Consensus 92 ~~~~~~~~~~~~~~~fD~v~~~~~-~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 156 (201)
T 2plw_A 92 NSVDYKLKEILQDKKIDIILSDAA-VPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL 156 (201)
T ss_dssp CHHHHHHHHHHTTCCEEEEEECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhhHHHHHhhcCCCcccEEEeCCC-cCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence 67789999998643 2332 122 23789999999999999997643
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=7.7e-10 Score=110.08 Aligned_cols=115 Identities=13% Similarity=0.107 Sum_probs=75.9
Q ss_pred CCeEEEECCccchhHHHhhc--------CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCC---CCCCC-CCcceE
Q 044932 309 IRVVLEIGSADLSFVASLLA--------KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRR---LPFPS-GVFDAI 376 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~--------~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~---LPFpD-~SFDlV 376 (689)
..+|||||||+|.+++.|+. ..|+++|+++... +.|....-...+...+... +++.+ .+||+|
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l-----~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I 156 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRC-----QIPASDMENITLHQGDCSDLTTFEHLREMAHPLI 156 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTC-----CCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEE
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHH-----HHHhccCCceEEEECcchhHHHHHhhccCCCCEE
Confidence 36899999999998877654 3599999998633 3333222223344455555 36544 479999
Q ss_pred EeccccccccccHHHHHHHHHh-ccCCCcEEEEEcCCCch--hHHHHHHHHHHhc--ceeE
Q 044932 377 HCDGCSITWHAHGGKLLLEMNR-ILRPSGYFILSTKHDSI--EEEEALTTLTASI--CWNI 432 (689)
Q Consensus 377 hcs~cli~W~~d~~~aL~EI~R-VLRPGG~fVIsdp~~~l--e~~~~ie~La~~l--~W~~ 432 (689)
++... +.+...+|.++.| +|||||+|++.+..... .....+.++++.. +|..
T Consensus 157 ~~d~~----~~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~ 213 (236)
T 2bm8_A 157 FIDNA----HANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSM 213 (236)
T ss_dssp EEESS----CSSHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEE
T ss_pred EECCc----hHhHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEE
Confidence 97543 2366789999998 99999999998642111 1123566666665 4554
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.92 E-value=7.3e-09 Score=100.50 Aligned_cols=97 Identities=15% Similarity=0.165 Sum_probs=64.9
Q ss_pred CCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHH----cCCC--cEEecCCCCC-CCC-----CCC
Q 044932 309 IRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALE----RGFP--AVVSPLGNRR-LPF-----PSG 371 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~e----RGL~--~i~~~~dt~~-LPF-----pD~ 371 (689)
..+|||||||+|.++.+|+.. .|+++|+++. +++.|.+ .++. ..+...++.. +|. ..+
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~-----~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~ 133 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPD-----CAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVD 133 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHH-----HHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCC
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChH-----HHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCC
Confidence 578999999999999888752 4899998864 4455444 3554 3334444322 332 237
Q ss_pred CcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 372 VFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 372 SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+||+|++.....+ ..+...++.++ |+|||||+|++.+..
T Consensus 134 ~fD~V~~d~~~~~-~~~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 134 TLDMVFLDHWKDR-YLPDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp CCSEEEECSCGGG-HHHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred ceEEEEEcCCccc-chHHHHHHHhc-cccCCCeEEEEeCCC
Confidence 9999998643322 23334566677 999999999998653
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.92 E-value=4.6e-10 Score=102.53 Aligned_cols=97 Identities=15% Similarity=0.121 Sum_probs=66.1
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH----cCCCcEEecCCCCC-CC-CC--CCCcceEEe
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE----RGFPAVVSPLGNRR-LP-FP--SGVFDAIHC 378 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e----RGL~~i~~~~dt~~-LP-Fp--D~SFDlVhc 378 (689)
..+|||+|||+|.++..++.. .|+++|+++. +++.|.+ .++...+...+... ++ ++ +.+||+|++
T Consensus 42 ~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~-----~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~ 116 (171)
T 1ws6_A 42 RGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPE-----AVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM 116 (171)
T ss_dssp CCEEEEETCSSCHHHHHHHHTTCEEEEECCCHH-----HHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHH-----HHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEE
Confidence 468999999999998888754 4889998763 4444443 34444454455433 22 11 348999998
Q ss_pred ccccccccccHHHHHHHHH--hccCCCcEEEEEcCCC
Q 044932 379 DGCSITWHAHGGKLLLEMN--RILRPSGYFILSTKHD 413 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI~--RVLRPGG~fVIsdp~~ 413 (689)
..... .+...++..+. |+|+|||++++..+..
T Consensus 117 ~~~~~---~~~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 117 APPYA---MDLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp CCCTT---SCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred CCCCc---hhHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 64321 33446777777 9999999999988753
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.91 E-value=2e-09 Score=117.64 Aligned_cols=102 Identities=9% Similarity=-0.076 Sum_probs=69.2
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHH--HHHHHHHH----cCC--Cc-EEecCCCCCC--CC--CC
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLV--DLAQVALE----RGF--PA-VVSPLGNRRL--PF--PS 370 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~se--amlq~A~e----RGL--~~-i~~~~dt~~L--PF--pD 370 (689)
...+|||||||+|.++..|+.. .|+|+|+++..... .|++.+.+ .|+ .. .+...+.... +| ..
T Consensus 242 ~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~~ 321 (433)
T 1u2z_A 242 KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELI 321 (433)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHG
T ss_pred CCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccccccccccc
Confidence 4579999999999998877652 49999998753322 24444344 352 22 2333333222 23 25
Q ss_pred CCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 371 GVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 371 ~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
++||+|+++..+ +..+...+|.++.|+|||||.|++.++
T Consensus 322 ~~FDvIvvn~~l--~~~d~~~~L~el~r~LKpGG~lVi~d~ 360 (433)
T 1u2z_A 322 PQCDVILVNNFL--FDEDLNKKVEKILQTAKVGCKIISLKS 360 (433)
T ss_dssp GGCSEEEECCTT--CCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred CCCCEEEEeCcc--ccccHHHHHHHHHHhCCCCeEEEEeec
Confidence 799999986433 345677889999999999999999864
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.91 E-value=6e-10 Score=103.51 Aligned_cols=98 Identities=9% Similarity=0.079 Sum_probs=67.3
Q ss_pred CCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHH----cCCC--cEEecCCCCC-CCCCCCCcceEEe
Q 044932 309 IRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALE----RGFP--AVVSPLGNRR-LPFPSGVFDAIHC 378 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~e----RGL~--~i~~~~dt~~-LPFpD~SFDlVhc 378 (689)
..+|||+|||+|.++..++.. .|+++|+++ .+++.|.+ .++. ..+...+... ++..+++||+|++
T Consensus 32 ~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~-----~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~ 106 (177)
T 2esr_A 32 GGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNR-----KAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFL 106 (177)
T ss_dssp SCEEEEETCTTCHHHHHHHHTTCCEEEEECCCH-----HHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEE
T ss_pred CCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCH-----HHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEE
Confidence 468999999999998887754 489999876 45555544 3443 3344445433 4444578999998
Q ss_pred ccccccccccHHHHHHHHH--hccCCCcEEEEEcCCC
Q 044932 379 DGCSITWHAHGGKLLLEMN--RILRPSGYFILSTKHD 413 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI~--RVLRPGG~fVIsdp~~ 413 (689)
.... + ......++..+. |+|+|||+|++.....
T Consensus 107 ~~~~-~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 107 DPPY-A-KETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp CCSS-H-HHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCCC-C-cchHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 6432 1 123456777776 9999999999987653
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=7.3e-10 Score=113.89 Aligned_cols=97 Identities=13% Similarity=0.074 Sum_probs=66.0
Q ss_pred CCCeEEEECCccchhHHHhhcC-CeEEEEcCCcccHHHHHHHHHHcCC-------CcEEe--cCCCCCCCCCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-EVLTLTVGLKDDLVDLAQVALERGF-------PAVVS--PLGNRRLPFPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-~V~gmDIsp~D~seamlq~A~eRGL-------~~i~~--~~dt~~LPFpD~SFDlVh 377 (689)
+..+|||+|||+|.|+.+++.. .|+++|+++ +. ..|.++.+ ...+. ..|...|| +++||+|+
T Consensus 82 ~g~~VLDlGcGtG~~s~~la~~~~V~gVD~s~-m~-----~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vv 153 (276)
T 2wa2_A 82 LKGTVVDLGCGRGSWSYYAASQPNVREVKAYT-LG-----TSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVL 153 (276)
T ss_dssp CCEEEEEESCTTCHHHHHHHTSTTEEEEEEEC-CC-----CTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEE
T ss_pred CCCEEEEeccCCCHHHHHHHHcCCEEEEECch-hh-----hhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEE
Confidence 3578999999999999888774 699999998 32 11222221 23344 55666665 68999999
Q ss_pred eccccc--cccccHH---HHHHHHHhccCCCc--EEEEEcCC
Q 044932 378 CDGCSI--TWHAHGG---KLLLEMNRILRPSG--YFILSTKH 412 (689)
Q Consensus 378 cs~cli--~W~~d~~---~aL~EI~RVLRPGG--~fVIsdp~ 412 (689)
|....+ +|..+.. .+|.++.|+||||| .|++....
T Consensus 154 sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 154 CDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp ECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred ECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 864311 1111111 37999999999999 99987543
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3.2e-09 Score=109.64 Aligned_cols=120 Identities=15% Similarity=0.142 Sum_probs=79.7
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcC---------CCcEEecCCCCCCCC--CCCC
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERG---------FPAVVSPLGNRRLPF--PSGV 372 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRG---------L~~i~~~~dt~~LPF--pD~S 372 (689)
...+|||||||+|.++..++.. .|+++|+++ .+++.|+++- ....+...|...+++ ++++
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~-----~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~ 169 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDG-----EVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNT 169 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCH-----HHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTC
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCH-----HHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCc
Confidence 4579999999999999888754 488999886 4566665532 123344445444433 4789
Q ss_pred cceEEeccccccccccH----HHHHHHHHhccCCCcEEEEEcCCCch--hHHHHHHHHHHhcceeEE
Q 044932 373 FDAIHCDGCSITWHAHG----GKLLLEMNRILRPSGYFILSTKHDSI--EEEEALTTLTASICWNIL 433 (689)
Q Consensus 373 FDlVhcs~cli~W~~d~----~~aL~EI~RVLRPGG~fVIsdp~~~l--e~~~~ie~La~~l~W~~v 433 (689)
||+|++.... ++.... ..+|.++.|+|||||+|++....... .....+.+.++..+|..+
T Consensus 170 fDvIi~d~~~-~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v 235 (304)
T 3bwc_A 170 YDVVIIDTTD-PAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASV 235 (304)
T ss_dssp EEEEEEECC----------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEE
T ss_pred eeEEEECCCC-ccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcE
Confidence 9999985322 322111 57899999999999999998654322 233456667777778654
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.8e-09 Score=101.47 Aligned_cols=94 Identities=22% Similarity=0.133 Sum_probs=63.1
Q ss_pred CCCeEEEECCccchhHHHhhc-------------CCeEEEEcCCcccHHHHHHHHHHcCCCcEEe-cCCCCCCC------
Q 044932 308 NIRVVLEIGSADLSFVASLLA-------------KEVLTLTVGLKDDLVDLAQVALERGFPAVVS-PLGNRRLP------ 367 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-------------~~V~gmDIsp~D~seamlq~A~eRGL~~i~~-~~dt~~LP------ 367 (689)
...+|||+|||+|.++..|+. ..|+++|+++... + .+ ..+. ..+...++
T Consensus 22 ~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~----~-----~~--~~~~~~~d~~~~~~~~~~~ 90 (196)
T 2nyu_A 22 PGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP----L-----EG--ATFLCPADVTDPRTSQRIL 90 (196)
T ss_dssp TTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC----C-----TT--CEEECSCCTTSHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc----C-----CC--CeEEEeccCCCHHHHHHHH
Confidence 357899999999998887764 3489999987310 0 11 2233 33333222
Q ss_pred --CCCCCcceEEeccc---cccccccH-------HHHHHHHHhccCCCcEEEEEcCC
Q 044932 368 --FPSGVFDAIHCDGC---SITWHAHG-------GKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 368 --FpD~SFDlVhcs~c---li~W~~d~-------~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+++++||+|+|..+ ..+|..+. ..+|.++.|+|||||.|++....
T Consensus 91 ~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (196)
T 2nyu_A 91 EVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA 147 (196)
T ss_dssp HHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 45679999998542 12232233 47899999999999999998654
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.2e-09 Score=105.47 Aligned_cols=93 Identities=17% Similarity=0.157 Sum_probs=66.1
Q ss_pred CCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHc----CC------CcEEecCCCCCCCCCCCC
Q 044932 308 NIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALER----GF------PAVVSPLGNRRLPFPSGV 372 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eR----GL------~~i~~~~dt~~LPFpD~S 372 (689)
...+|||+|||+|.++..|+. ..|+++|+++. +++.|.++ ++ ...+...+....++++++
T Consensus 77 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 151 (226)
T 1i1n_A 77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKE-----LVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAP 151 (226)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHH-----HHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCC
T ss_pred CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHH-----HHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCC
Confidence 356899999999998877763 35999998864 44444332 22 233445555555556789
Q ss_pred cceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 373 FDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 373 FDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
||+|++..... .++.++.|+|||||+|++...+
T Consensus 152 fD~i~~~~~~~-------~~~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 152 YDAIHVGAAAP-------VVPQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEEEEECSBBS-------SCCHHHHHTEEEEEEEEEEESC
T ss_pred cCEEEECCchH-------HHHHHHHHhcCCCcEEEEEEec
Confidence 99999875432 3457899999999999998765
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.90 E-value=8.2e-10 Score=112.76 Aligned_cols=97 Identities=15% Similarity=0.134 Sum_probs=65.8
Q ss_pred CCCeEEEECCccchhHHHhhcC-CeEEEEcCCcccHHHHHHHHHHcCC-------CcEEe--cCCCCCCCCCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-EVLTLTVGLKDDLVDLAQVALERGF-------PAVVS--PLGNRRLPFPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-~V~gmDIsp~D~seamlq~A~eRGL-------~~i~~--~~dt~~LPFpD~SFDlVh 377 (689)
...+|||+|||+|.|+.+++.. .|+++|+++ +. ..+.++.+ ...+. ..|...|| +++||+|+
T Consensus 74 ~g~~VLDlGcGtG~~s~~la~~~~V~gvD~s~-m~-----~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~ 145 (265)
T 2oxt_A 74 LTGRVVDLGCGRGGWSYYAASRPHVMDVRAYT-LG-----VGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIM 145 (265)
T ss_dssp CCEEEEEESCTTSHHHHHHHTSTTEEEEEEEC-CC-----CSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEE
T ss_pred CCCEEEEeCcCCCHHHHHHHHcCcEEEEECch-hh-----hhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEE
Confidence 3578999999999999888774 699999998 32 11111111 23344 55666655 78999999
Q ss_pred eccccc--cccccHH---HHHHHHHhccCCCc--EEEEEcCC
Q 044932 378 CDGCSI--TWHAHGG---KLLLEMNRILRPSG--YFILSTKH 412 (689)
Q Consensus 378 cs~cli--~W~~d~~---~aL~EI~RVLRPGG--~fVIsdp~ 412 (689)
|....+ +|..+.. .+|.++.|+||||| .|++....
T Consensus 146 sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 146 CDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp ECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred EeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 864311 1111111 38999999999999 99997644
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=5.1e-09 Score=110.00 Aligned_cols=92 Identities=14% Similarity=0.216 Sum_probs=66.5
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
...+|||||||+|.++..|+.. .++++|+ | .+++.|.+.. ...+...|... |+|+ ||+|++..++.
T Consensus 209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~-----~~~~~a~~~~-~v~~~~~d~~~-~~~~--~D~v~~~~~lh 278 (372)
T 1fp1_D 209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-P-----QVIENAPPLS-GIEHVGGDMFA-SVPQ--GDAMILKAVCH 278 (372)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H-----HHHTTCCCCT-TEEEEECCTTT-CCCC--EEEEEEESSGG
T ss_pred CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-H-----HHHHhhhhcC-CCEEEeCCccc-CCCC--CCEEEEecccc
Confidence 4579999999999999888753 3566676 4 4565554321 13344445544 6774 99999987765
Q ss_pred cccccHH--HHHHHHHhccCCCcEEEEEc
Q 044932 384 TWHAHGG--KLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 384 ~W~~d~~--~aL~EI~RVLRPGG~fVIsd 410 (689)
+| .++. .+|.++.|+|||||+|+|.+
T Consensus 279 ~~-~d~~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 279 NW-SDEKCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp GS-CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cC-CHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 54 4455 89999999999999999985
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.89 E-value=7.1e-09 Score=105.35 Aligned_cols=121 Identities=13% Similarity=0.064 Sum_probs=75.4
Q ss_pred CCeEEEECCccchhHHHhhcC---CeEEEEc-CCcccHHHHHHHHHHc---------CCC------cEEecCCC----CC
Q 044932 309 IRVVLEIGSADLSFVASLLAK---EVLTLTV-GLKDDLVDLAQVALER---------GFP------AVVSPLGN----RR 365 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~V~gmDI-sp~D~seamlq~A~eR---------GL~------~i~~~~dt----~~ 365 (689)
..+|||+|||+|.++..++.. .|+++|+ ++. +++.|.++ ++. ..+..++. ..
T Consensus 80 ~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~-----~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 154 (281)
T 3bzb_A 80 GKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPE-----ILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDS 154 (281)
T ss_dssp TCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHH-----HHHHHHHHHHTTCC----------CCCEEEECCTTSCTHH
T ss_pred CCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHH-----HHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHH
Confidence 468999999999988777653 5899999 663 34443322 221 22221211 11
Q ss_pred CC--CCCCCcceEEeccccccccccHHHHHHHHHhccC---C--CcEEEEEcCCCc---hhHHHHHHHHHHhcc-eeEEE
Q 044932 366 LP--FPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILR---P--SGYFILSTKHDS---IEEEEALTTLTASIC-WNILA 434 (689)
Q Consensus 366 LP--FpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLR---P--GG~fVIsdp~~~---le~~~~ie~La~~l~-W~~v~ 434 (689)
++ +++++||+|+++.++.+ ..+...+|.++.|+|+ | ||.+++...+.. ......+...++..+ |....
T Consensus 155 ~~~~~~~~~fD~Ii~~dvl~~-~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~ 233 (281)
T 3bzb_A 155 LQRCTGLQRFQVVLLADLLSF-HQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEP 233 (281)
T ss_dssp HHHHHSCSSBSEEEEESCCSC-GGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTEEEEE
T ss_pred HHhhccCCCCCEEEEeCcccC-hHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEEEEE
Confidence 11 04689999998766543 5677899999999999 9 998777543321 111123555677778 87654
Q ss_pred e
Q 044932 435 H 435 (689)
Q Consensus 435 ~ 435 (689)
.
T Consensus 234 ~ 234 (281)
T 3bzb_A 234 W 234 (281)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.88 E-value=4e-09 Score=103.68 Aligned_cols=93 Identities=20% Similarity=0.216 Sum_probs=67.4
Q ss_pred CCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHH----cCCC--cEEecCCCCC-CC-CCCCCcceE
Q 044932 309 IRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALE----RGFP--AVVSPLGNRR-LP-FPSGVFDAI 376 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~e----RGL~--~i~~~~dt~~-LP-FpD~SFDlV 376 (689)
..+|||+|||+|.++..|+. ..|+++|+++. +++.|.+ .++. ..+...+... +| +.+++||+|
T Consensus 72 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~-----~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V 146 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFASISDDIHVTTIERNET-----MIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMI 146 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHH-----HHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEE
T ss_pred CCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHH-----HHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEE
Confidence 57899999999999988876 24899999874 4444443 4553 3344455433 44 447899999
Q ss_pred EeccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 377 HCDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 377 hcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
++.. +..+...+|.++.|+|||||+|++..
T Consensus 147 ~~~~----~~~~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 147 FIDA----AKAQSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp EEET----TSSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred EEcC----cHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 9753 23355689999999999999999954
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=3e-08 Score=104.19 Aligned_cols=139 Identities=10% Similarity=0.102 Sum_probs=94.4
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc----CCC-cEEecCCCCCCCCCCCCcceEEe
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER----GFP-AVVSPLGNRRLPFPSGVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR----GL~-~i~~~~dt~~LPFpD~SFDlVhc 378 (689)
..++|||||||+|.++..|+.+ .+++.|+ +.+++.|.++ +.. ..+...|....|++ .+|++++
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl------p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~ 250 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI------PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYIL 250 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC------HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEE
T ss_pred cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC------HHHHHHHHHhhhhcccCceeeecCccccCCCC--CceEEEe
Confidence 4679999999999999888764 2455554 3466666654 111 22334444444555 5799999
Q ss_pred cccccccccc-HHHHHHHHHhccCCCcEEEEEcCC-------Cch----------------hHHHHHHHHHHhcceeEEE
Q 044932 379 DGCSITWHAH-GGKLLLEMNRILRPSGYFILSTKH-------DSI----------------EEEEALTTLTASICWNILA 434 (689)
Q Consensus 379 s~cli~W~~d-~~~aL~EI~RVLRPGG~fVIsdp~-------~~l----------------e~~~~ie~La~~l~W~~v~ 434 (689)
..++.+|.++ -..+|++++++|+|||.++|.+.. ... ....++..+++..||+.+.
T Consensus 251 ~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~ 330 (353)
T 4a6d_A 251 ARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQ 330 (353)
T ss_dssp ESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEE
T ss_pred eeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEE
Confidence 8888777543 357899999999999999998632 000 0134688999999999876
Q ss_pred eeccccCceeEEEEEeCCCch
Q 044932 435 HKTDEISEMGVKIYQKPESND 455 (689)
Q Consensus 435 ~~~~~~g~~~i~IwqKp~~~~ 455 (689)
... +.+...+.+.+|...+.
T Consensus 331 v~~-~~~~~~~i~ArKgt~~~ 350 (353)
T 4a6d_A 331 FKK-TGAIYDAILARKGTHHH 350 (353)
T ss_dssp EEC-CSSSCEEEEEECCCC--
T ss_pred EEE-cCCceEEEEEEecCccc
Confidence 533 34556688999976643
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.86 E-value=6.8e-09 Score=104.26 Aligned_cols=113 Identities=12% Similarity=0.104 Sum_probs=78.2
Q ss_pred CCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHc----CC--CcEEecCCCCCCCCCCCCcceE
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALER----GF--PAVVSPLGNRRLPFPSGVFDAI 376 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eR----GL--~~i~~~~dt~~LPFpD~SFDlV 376 (689)
...+|||+|||+|.++..|+.. .|+++|+++. +++.|.++ ++ ...+...+.... +++++||+|
T Consensus 112 ~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~V 185 (277)
T 1o54_A 112 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREE-----FAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDVDAL 185 (277)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHH-----HHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSEEEE
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHH-----HHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCccCEE
Confidence 3568999999999988777643 4889998763 44444443 54 233444554444 777899999
Q ss_pred EeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEE
Q 044932 377 HCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 377 hcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~ 434 (689)
++.. +++..+|.++.++|+|||+|++..+.. .....+...+...+|..+.
T Consensus 186 ~~~~------~~~~~~l~~~~~~L~pgG~l~~~~~~~--~~~~~~~~~l~~~gf~~~~ 235 (277)
T 1o54_A 186 FLDV------PDPWNYIDKCWEALKGGGRFATVCPTT--NQVQETLKKLQELPFIRIE 235 (277)
T ss_dssp EECC------SCGGGTHHHHHHHEEEEEEEEEEESSH--HHHHHHHHHHHHSSEEEEE
T ss_pred EECC------cCHHHHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHHHHHHCCCceeE
Confidence 9742 245589999999999999999998752 1223355556667887654
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.86 E-value=7.5e-09 Score=104.05 Aligned_cols=115 Identities=13% Similarity=0.109 Sum_probs=76.4
Q ss_pred CCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc-------CCC--cEEecCCCCCC-------CC
Q 044932 309 IRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER-------GFP--AVVSPLGNRRL-------PF 368 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR-------GL~--~i~~~~dt~~L-------PF 368 (689)
..+|||+|||+|.++..|+.+ .|+++|+++ .+++.|.++ ++. ..+...|...+ +|
T Consensus 37 ~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~-----~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~ 111 (260)
T 2ozv_A 37 ACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQ-----EMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGL 111 (260)
T ss_dssp CEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSH-----HHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTC
T ss_pred CCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCH-----HHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhcc
Confidence 468999999999998877643 589999876 466666653 222 23444555554 36
Q ss_pred CCCCcceEEecccccc----------------c-cccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhccee
Q 044932 369 PSGVFDAIHCDGCSIT----------------W-HAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWN 431 (689)
Q Consensus 369 pD~SFDlVhcs~cli~----------------W-~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~ 431 (689)
++++||+|+|..-... . ......+|.++.++|||||+|++..+..... .+..++... |.
T Consensus 112 ~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---~~~~~l~~~-~~ 187 (260)
T 2ozv_A 112 PDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVA---EIIAACGSR-FG 187 (260)
T ss_dssp CTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHH---HHHHHHTTT-EE
T ss_pred CCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHH---HHHHHHHhc-CC
Confidence 7899999998621111 0 1135678999999999999999987765332 244455443 54
Q ss_pred E
Q 044932 432 I 432 (689)
Q Consensus 432 ~ 432 (689)
.
T Consensus 188 ~ 188 (260)
T 2ozv_A 188 G 188 (260)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.86 E-value=2e-09 Score=112.46 Aligned_cols=97 Identities=14% Similarity=0.075 Sum_probs=69.8
Q ss_pred CCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHH----cCCCcEEecCCCCCCCCCCCCcceEEecc
Q 044932 309 IRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALE----RGFPAVVSPLGNRRLPFPSGVFDAIHCDG 380 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~e----RGL~~i~~~~dt~~LPFpD~SFDlVhcs~ 380 (689)
..+|||+|||+|.++..++. ..|+++|+++. +++.|.+ .++...+...+.. .+++++||+|+|..
T Consensus 197 ~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~-----~l~~a~~~~~~~~~~~~~~~~d~~--~~~~~~fD~Iv~~~ 269 (343)
T 2pjd_A 197 KGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAP-----AVEASRATLAANGVEGEVFASNVF--SEVKGRFDMIISNP 269 (343)
T ss_dssp CSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHH-----HHHHHHHHHHHTTCCCEEEECSTT--TTCCSCEEEEEECC
T ss_pred CCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHH-----HHHHHHHHHHHhCCCCEEEEcccc--ccccCCeeEEEECC
Confidence 35899999999999888764 26999999863 4444443 4555555444443 34578999999875
Q ss_pred cccc---c-cccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 381 CSIT---W-HAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 381 cli~---W-~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
.+.+ + ..+...+|.++.|+|||||.|++....
T Consensus 270 ~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 270 PFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp CCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred CcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 4321 1 234578999999999999999998764
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.2e-09 Score=101.07 Aligned_cols=93 Identities=15% Similarity=0.059 Sum_probs=65.9
Q ss_pred CCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHH----cCCC--cEEecCCCCC-CCCCCCCcceE
Q 044932 309 IRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALE----RGFP--AVVSPLGNRR-LPFPSGVFDAI 376 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~e----RGL~--~i~~~~dt~~-LPFpD~SFDlV 376 (689)
..+|||+|||+|.++..|+.. .|+++|+++. +++.|.+ .++. ..+...+... +|..++ ||+|
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~-----~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v 130 (210)
T 3c3p_A 57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRD-----NVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDIL 130 (210)
T ss_dssp CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHH-----HHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEE
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHH-----HHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEE
Confidence 468999999999998888753 5899998864 4444443 3443 2333444433 355556 9999
Q ss_pred EeccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 377 HCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 377 hcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
++... ..+...+|.++.|+|||||+|++.+.
T Consensus 131 ~~~~~----~~~~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 131 FMDCD----VFNGADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp EEETT----TSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred EEcCC----hhhhHHHHHHHHHhcCCCeEEEEECc
Confidence 97532 23567899999999999999999653
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.2e-08 Score=96.45 Aligned_cols=94 Identities=22% Similarity=0.139 Sum_probs=65.3
Q ss_pred CCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHH----cCCCc--EEecCCCCC-CC-CC---CCC
Q 044932 309 IRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALE----RGFPA--VVSPLGNRR-LP-FP---SGV 372 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~e----RGL~~--i~~~~dt~~-LP-Fp---D~S 372 (689)
..+|||||||+|.++.+|+.. .|+++|+++. +++.|.+ .|+.. .+...+... ++ ++ .++
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~-----~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 133 (223)
T 3duw_A 59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEK-----HADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEP 133 (223)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHH-----HHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCC
T ss_pred CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHH-----HHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCC
Confidence 478999999999999888764 4899998864 4444433 36542 344444322 11 11 267
Q ss_pred cceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 373 FDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 373 FDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
||+|++... ......+|.++.|+|||||++++.+.
T Consensus 134 fD~v~~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 134 FDFIFIDAD----KQNNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp CSEEEECSC----GGGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred cCEEEEcCC----cHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 999997532 23456899999999999999998764
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.85 E-value=2.3e-09 Score=105.96 Aligned_cols=98 Identities=12% Similarity=0.085 Sum_probs=64.6
Q ss_pred CCeEEEECCccchhHHHhhcC------CeEEEEcCCcccHHHHHHHHHHc-------CCC--------------------
Q 044932 309 IRVVLEIGSADLSFVASLLAK------EVLTLTVGLKDDLVDLAQVALER-------GFP-------------------- 355 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~------~V~gmDIsp~D~seamlq~A~eR-------GL~-------------------- 355 (689)
..+|||+|||+|.++..++.. .|+++|+++. +++.|.++ ++.
T Consensus 52 ~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~-----~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (250)
T 1o9g_A 52 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPA-----PLELAAKNLALLSPAGLTARELERREQSERFGKPSYLE 126 (250)
T ss_dssp CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHH-----HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHH-----HHHHHHHHHHHhhhccccccchhhhhhhhhcccccchh
Confidence 468999999999988777643 5899999874 44444422 110
Q ss_pred -------cE-------------EecCCCCCCCC------CCCCcceEEecccccc---cc-----ccHHHHHHHHHhccC
Q 044932 356 -------AV-------------VSPLGNRRLPF------PSGVFDAIHCDGCSIT---WH-----AHGGKLLLEMNRILR 401 (689)
Q Consensus 356 -------~i-------------~~~~dt~~LPF------pD~SFDlVhcs~cli~---W~-----~d~~~aL~EI~RVLR 401 (689)
.. +...+... ++ +..+||+|+|....+. |. .....+|.++.|+|+
T Consensus 127 ~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 205 (250)
T 1o9g_A 127 AAQAARRLRERLTAEGGALPCAIRTADVFD-PRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALP 205 (250)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEEECCTTC-GGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSC
T ss_pred hhhhhhhhhhhccccccccccceeeccccc-ccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcC
Confidence 11 44444433 23 4458999998643222 11 223588999999999
Q ss_pred CCcEEEEEcCC
Q 044932 402 PSGYFILSTKH 412 (689)
Q Consensus 402 PGG~fVIsdp~ 412 (689)
|||+|++....
T Consensus 206 pgG~l~~~~~~ 216 (250)
T 1o9g_A 206 AHAVIAVTDRS 216 (250)
T ss_dssp TTCEEEEEESS
T ss_pred CCcEEEEeCcc
Confidence 99999995543
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.85 E-value=3e-09 Score=102.50 Aligned_cols=94 Identities=19% Similarity=0.181 Sum_probs=66.1
Q ss_pred CCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHH----cCCC--cEEecCCCC-CCC-CC----CC
Q 044932 309 IRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALE----RGFP--AVVSPLGNR-RLP-FP----SG 371 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~e----RGL~--~i~~~~dt~-~LP-Fp----D~ 371 (689)
..+|||+|||+|.++..|+.. .|+++|+++. +++.|.+ .|+. ..+...+.. .++ ++ .+
T Consensus 65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~-----~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 139 (225)
T 3tr6_A 65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEK-----STALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAW 139 (225)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHH-----HHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTT
T ss_pred CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHH-----HHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCC
Confidence 468999999999999888754 4899998864 4444443 3554 334444432 222 11 17
Q ss_pred CcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 372 VFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 372 SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
+||+|++.. +..+...+|.++.|+|||||+|++.+.
T Consensus 140 ~fD~v~~~~----~~~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 140 QYDLIYIDA----DKANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp CEEEEEECS----CGGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred CccEEEECC----CHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 999998643 234567899999999999999999864
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=3.5e-09 Score=110.18 Aligned_cols=101 Identities=14% Similarity=0.101 Sum_probs=64.3
Q ss_pred CCCeEEEECCccchhHHHhhcC-CeEEEEc----CCcccHHHHHHHHHHcCCCcE-EecC-CCCCCCCCCCCcceEEecc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-EVLTLTV----GLKDDLVDLAQVALERGFPAV-VSPL-GNRRLPFPSGVFDAIHCDG 380 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-~V~gmDI----sp~D~seamlq~A~eRGL~~i-~~~~-dt~~LPFpD~SFDlVhcs~ 380 (689)
+..+|||||||+|.++..|+.+ .|+++|+ ++..+. .+. +...+.+.+ +... +...+ ++.+||+|+|..
T Consensus 82 ~g~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~--~~~-~~~~~~~~v~~~~~~D~~~l--~~~~fD~V~sd~ 156 (305)
T 2p41_A 82 PEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE--PIP-MSTYGWNLVRLQSGVDVFFI--PPERCDTLLCDI 156 (305)
T ss_dssp CCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC--CCC-CCSTTGGGEEEECSCCTTTS--CCCCCSEEEECC
T ss_pred CCCEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHH--HHH-hhhcCCCCeEEEeccccccC--CcCCCCEEEECC
Confidence 3579999999999999988876 5999999 442110 000 001122222 3333 44444 457999999854
Q ss_pred cc--ccccccHH---HHHHHHHhccCCCcEEEEEcCCC
Q 044932 381 CS--ITWHAHGG---KLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 381 cl--i~W~~d~~---~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
.. .+|..+.. .+|.++.|+|||||.|++.....
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 32 12322222 58999999999999999976544
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.7e-09 Score=107.52 Aligned_cols=118 Identities=8% Similarity=0.006 Sum_probs=79.9
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc----CCCcEEecCCCCCCCCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER----GFPAVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR----GL~~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
...+|||+|||+|.++..++.. .|+++|+++ .|+++|.++ |+...+...+.... .+.++||+|...
T Consensus 49 ~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~-----~~leiar~~~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~ 122 (200)
T 3fzg_A 49 HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDR-----AEIAFLSSIIGKLKTTIKYRFLNKESD-VYKGTYDVVFLL 122 (200)
T ss_dssp CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCH-----HHHHHHHHHHHHSCCSSEEEEECCHHH-HTTSEEEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCH-----HHHHHHHHHHHhcCCCccEEEeccccc-CCCCCcChhhHh
Confidence 3579999999999999888543 589999876 466666543 66533333443222 456899999875
Q ss_pred cccccccccHHHHHHHHHhccCCCcEEEEEcCC-------Cchh-HHHHHHHHHHhcceeE
Q 044932 380 GCSITWHAHGGKLLLEMNRILRPSGYFILSTKH-------DSIE-EEEALTTLTASICWNI 432 (689)
Q Consensus 380 ~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~-------~~le-~~~~ie~La~~l~W~~ 432 (689)
..+|..++...++..+.+.|+|||+||-.... .+.. ....+++.+..-.|.+
T Consensus 123 -k~LHlL~~~~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~~~~~~~~~ 182 (200)
T 3fzg_A 123 -KMLPVLKQQDVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESFTKGWIKIL 182 (200)
T ss_dssp -TCHHHHHHTTCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHHTTTTSCEE
T ss_pred -hHHHhhhhhHHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHhccCcceee
Confidence 45565556667788999999999999988732 1111 1234666666656644
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.5e-08 Score=107.50 Aligned_cols=134 Identities=14% Similarity=0.039 Sum_probs=89.1
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHH----cCC--CcEEecCCCCCCCCCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALE----RGF--PAVVSPLGNRRLPFPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~e----RGL--~~i~~~~dt~~LPFpD~SFDlVh 377 (689)
...+|||+|||+|.++..++.. .|+|+|+++. |++.|++ .|+ ...+...|...+|+++++||+|+
T Consensus 217 ~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~-----~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii 291 (373)
T 3tm4_A 217 DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRK-----HLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAI 291 (373)
T ss_dssp CSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHH-----HHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEE
T ss_pred CCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHH-----HHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEE
Confidence 3578999999999988777642 6999999874 4444443 466 34566778888999889999999
Q ss_pred eccccc------ccccc-HHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccccCceeEEEEEe
Q 044932 378 CDGCSI------TWHAH-GGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEISEMGVKIYQK 450 (689)
Q Consensus 378 cs~cli------~W~~d-~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqK 450 (689)
|..-.- ....+ ...++.++.|+| ||.+++..+.. ..+++++..++|+......-..|.....+||+
T Consensus 292 ~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~~-----~~~~~~~~~~G~~~~~~~~~~nG~l~~~~~~~ 364 (373)
T 3tm4_A 292 SNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTEK-----KAIEEAIAENGFEIIHHRVIGHGGLMVHLYVV 364 (373)
T ss_dssp EECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESCH-----HHHHHHHHHTTEEEEEEEEEEETTEEEEEEEE
T ss_pred ECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECCH-----HHHHHHHHHcCCEEEEEEEEEcCCEEEEEEec
Confidence 852110 00011 156889999999 44444444321 23566788899988765443345566777777
Q ss_pred CCC
Q 044932 451 PES 453 (689)
Q Consensus 451 p~~ 453 (689)
|..
T Consensus 365 ~~~ 367 (373)
T 3tm4_A 365 KLE 367 (373)
T ss_dssp EET
T ss_pred cCc
Confidence 644
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=5.1e-09 Score=110.44 Aligned_cols=118 Identities=16% Similarity=0.144 Sum_probs=82.2
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
...+|||||||+|.++..|+.. .++++|+ | .+++.|.++ ....+...|... |+|.+ |+|++..++.
T Consensus 201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-----~~~~~a~~~-~~v~~~~~D~~~-~~p~~--D~v~~~~vlh 270 (364)
T 3p9c_A 201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-P-----HVISEAPQF-PGVTHVGGDMFK-EVPSG--DTILMKWILH 270 (364)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H-----HHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCGG
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-H-----HHHHhhhhc-CCeEEEeCCcCC-CCCCC--CEEEehHHhc
Confidence 4679999999999999888752 4777786 3 455555433 123344555555 78854 9999988777
Q ss_pred cccc-cHHHHHHHHHhccCCCcEEEEEcCC--C----c-h------h--------------HHHHHHHHHHhcceeEEEe
Q 044932 384 TWHA-HGGKLLLEMNRILRPSGYFILSTKH--D----S-I------E--------------EEEALTTLTASICWNILAH 435 (689)
Q Consensus 384 ~W~~-d~~~aL~EI~RVLRPGG~fVIsdp~--~----~-l------e--------------~~~~ie~La~~l~W~~v~~ 435 (689)
+|.. +...+|++++|+|||||+|+|.+.. . . . . ...++..+++..+|+.+..
T Consensus 271 ~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~ 350 (364)
T 3p9c_A 271 DWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKS 350 (364)
T ss_dssp GSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceEEE
Confidence 7753 3468999999999999999997632 0 0 0 0 1245778888888887654
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.83 E-value=7.6e-09 Score=110.41 Aligned_cols=109 Identities=11% Similarity=0.075 Sum_probs=71.9
Q ss_pred HHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHH----cCCC----cEEecC
Q 044932 294 ESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALE----RGFP----AVVSPL 361 (689)
Q Consensus 294 d~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~e----RGL~----~i~~~~ 361 (689)
..+.+.++. . ...+|||+|||+|.++..++.. .|+++|+++. +++.|.+ .++. ..+...
T Consensus 212 ~~ll~~l~~-~---~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~-----al~~Ar~n~~~ngl~~~~~v~~~~~ 282 (375)
T 4dcm_A 212 RFFMQHLPE-N---LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPM-----AVASSRLNVETNMPEALDRCEFMIN 282 (375)
T ss_dssp HHHHHTCCC-S---CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHH-----HHHHHHHHHHHHCGGGGGGEEEEEC
T ss_pred HHHHHhCcc-c---CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHH-----HHHHHHHHHHHcCCCcCceEEEEec
Confidence 345555542 1 2368999999999998887753 5999999864 4444443 3543 223444
Q ss_pred CCCCCCCCCCCcceEEecccccc--ccc-c-HHHHHHHHHhccCCCcEEEEEcCC
Q 044932 362 GNRRLPFPSGVFDAIHCDGCSIT--WHA-H-GGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 362 dt~~LPFpD~SFDlVhcs~cli~--W~~-d-~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+... ++++++||+|+|...+.+ +.. . ...+|.++.|+|||||+|++....
T Consensus 283 D~~~-~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~ 336 (375)
T 4dcm_A 283 NALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 336 (375)
T ss_dssp STTT-TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred hhhc-cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence 4433 677889999998643221 111 1 236899999999999999998654
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.82 E-value=6.9e-09 Score=99.27 Aligned_cols=93 Identities=19% Similarity=0.150 Sum_probs=64.8
Q ss_pred CCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHc----CCCc-EEecCCCCCCCCC-CCCcceE
Q 044932 308 NIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALER----GFPA-VVSPLGNRRLPFP-SGVFDAI 376 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eR----GL~~-i~~~~dt~~LPFp-D~SFDlV 376 (689)
...+|||+|||+|.++..|+. ..|+++|+++. +++.|.++ ++.. .+...+. ..+++ +++||+|
T Consensus 77 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~-----~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~v 150 (215)
T 2yxe_A 77 PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPE-----LAEKAERTLRKLGYDNVIVIVGDG-TLGYEPLAPYDRI 150 (215)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHH-----HHHHHHHHHHHHTCTTEEEEESCG-GGCCGGGCCEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHH-----HHHHHHHHHHHcCCCCeEEEECCc-ccCCCCCCCeeEE
Confidence 356999999999998877763 45899998763 45555443 4443 3334443 22344 6799999
Q ss_pred EeccccccccccHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 377 HCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 377 hcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
++...+.+ . ..++.|+|||||++++..++.
T Consensus 151 ~~~~~~~~-~------~~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 151 YTTAAGPK-I------PEPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp EESSBBSS-C------CHHHHHTEEEEEEEEEEESSS
T ss_pred EECCchHH-H------HHHHHHHcCCCcEEEEEECCC
Confidence 98765433 2 248999999999999998753
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.1e-08 Score=97.49 Aligned_cols=112 Identities=17% Similarity=0.162 Sum_probs=75.7
Q ss_pred CCCeEEEECCccchhHHHhhc--CCeEEEEcCCcccHHHHHHHHHHc----CC--CcEEecCCCCCCCCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLA--KEVLTLTVGLKDDLVDLAQVALER----GF--PAVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~--~~V~gmDIsp~D~seamlq~A~eR----GL--~~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
...+|||+|||+|.++..++. ..|+++|+++ .+++.|.++ ++ ...+...+.....+++++||+|++.
T Consensus 91 ~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~-----~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 165 (248)
T 2yvl_A 91 KEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVE-----EFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVD 165 (248)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSSEEEEECSCH-----HHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEEC
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCEEEEEecCH-----HHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEEC
Confidence 356899999999998887774 4688999876 355555443 54 2334445544433367899999874
Q ss_pred cccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEE
Q 044932 380 GCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 380 ~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v 433 (689)
. .++..+|.++.++|+|||++++..+... ....+..++... |..+
T Consensus 166 ~------~~~~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~l~~~-f~~~ 210 (248)
T 2yvl_A 166 V------REPWHYLEKVHKSLMEGAPVGFLLPTAN--QVIKLLESIENY-FGNL 210 (248)
T ss_dssp S------SCGGGGHHHHHHHBCTTCEEEEEESSHH--HHHHHHHHSTTT-EEEE
T ss_pred C------cCHHHHHHHHHHHcCCCCEEEEEeCCHH--HHHHHHHHHHhh-CCcc
Confidence 2 2455899999999999999999988631 222344444444 5543
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=5.6e-09 Score=107.70 Aligned_cols=93 Identities=17% Similarity=0.063 Sum_probs=67.0
Q ss_pred CCCeEEEECCccchhHHHhhcC--C---eEEEEcCCcccHHHHHHHHHH----cCCCc-EEecCCCCCCCCCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--E---VLTLTVGLKDDLVDLAQVALE----RGFPA-VVSPLGNRRLPFPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~---V~gmDIsp~D~seamlq~A~e----RGL~~-i~~~~dt~~LPFpD~SFDlVh 377 (689)
...+|||||||+|.++..|+.. . |+++|+++. +++.|.+ .|+.. .+...+...++.++++||+|+
T Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~-----~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv 149 (317)
T 1dl5_A 75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRK-----ICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIF 149 (317)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHH-----HHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEE
T ss_pred CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHH-----HHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEE
Confidence 3579999999999998877642 3 999998863 4555544 36543 344556555555668999999
Q ss_pred eccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+.....+ .. .++.++|||||++++...+
T Consensus 150 ~~~~~~~-~~------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 150 VTVGVDE-VP------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp ECSBBSC-CC------HHHHHHEEEEEEEEEEBCB
T ss_pred EcCCHHH-HH------HHHHHhcCCCcEEEEEECC
Confidence 8754432 22 5789999999999998754
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.82 E-value=7.2e-09 Score=103.45 Aligned_cols=98 Identities=14% Similarity=0.025 Sum_probs=68.4
Q ss_pred CCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHcCCC--cEEecCCCCC-CCCC-----CCCcce
Q 044932 309 IRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALERGFP--AVVSPLGNRR-LPFP-----SGVFDA 375 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eRGL~--~i~~~~dt~~-LPFp-----D~SFDl 375 (689)
.++|||||||+|..+..|+. ..|+++|+++.... ...+.+...|+. ..+...++.. ++.. +++||+
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~-~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTK-HAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCC-CSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHH-HHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 57899999999998888774 25999999986442 223334445654 3344444432 2321 489999
Q ss_pred EEeccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 376 IHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 376 Vhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
|++... ..+...+|.++.|+|||||+|++.+.
T Consensus 140 V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~~ 171 (242)
T 3r3h_A 140 IFIDAD----KTNYLNYYELALKLVTPKGLIAIDNI 171 (242)
T ss_dssp EEEESC----GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred EEEcCC----hHHhHHHHHHHHHhcCCCeEEEEECC
Confidence 987532 34556789999999999999999753
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.81 E-value=4.2e-09 Score=109.03 Aligned_cols=94 Identities=18% Similarity=0.053 Sum_probs=62.5
Q ss_pred CCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHc----C------------CCcEEecCCCCCC
Q 044932 308 NIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALER----G------------FPAVVSPLGNRRL 366 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eR----G------------L~~i~~~~dt~~L 366 (689)
...+|||+|||+|.++..|+. ..|+++|+++. +++.|.++ + ....+...+...+
T Consensus 105 ~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~-----~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~ 179 (336)
T 2b25_A 105 PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKD-----HHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA 179 (336)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHH-----HHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCC
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHH-----HHHHHHHHHHHhhcccccccccccCCceEEEECChHHc
Confidence 357899999999998887764 34899998874 44444432 1 1233445555554
Q ss_pred --CCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 367 --PFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 367 --PFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
++++++||+|++... ++..+|.++.|+|||||+|++..+.
T Consensus 180 ~~~~~~~~fD~V~~~~~------~~~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 180 TEDIKSLTFDAVALDML------NPHVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp C-------EEEEEECSS------STTTTHHHHGGGEEEEEEEEEEESS
T ss_pred ccccCCCCeeEEEECCC------CHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 577889999997532 2235899999999999999988774
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-08 Score=105.42 Aligned_cols=121 Identities=17% Similarity=0.139 Sum_probs=80.0
Q ss_pred CCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHH----cCCC-cEEecCCCCCCCCCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALE----RGFP-AVVSPLGNRRLPFPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~e----RGL~-~i~~~~dt~~LPFpD~SFDlVh 377 (689)
...+|||+|||+|.++..|+. ..|+++|+++. +++.+.+ .|+. ..+...|...++..+++||+|+
T Consensus 118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~-----~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il 192 (315)
T 1ixk_A 118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDEN-----RLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKIL 192 (315)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHH-----HHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHH-----HHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEE
Confidence 356899999999998887774 24899998864 4444433 3664 3455666666665567999999
Q ss_pred ecc-c----ccc--------cccc--------HHHHHHHHHhccCCCcEEEEEcCCCch-hHHHHHHHHHHhcceeEE
Q 044932 378 CDG-C----SIT--------WHAH--------GGKLLLEMNRILRPSGYFILSTKHDSI-EEEEALTTLTASICWNIL 433 (689)
Q Consensus 378 cs~-c----li~--------W~~d--------~~~aL~EI~RVLRPGG~fVIsdp~~~l-e~~~~ie~La~~l~W~~v 433 (689)
+.. | .++ |..+ ...+|.++.|+|||||+|++++-.-.. +....+..+++..+|+.+
T Consensus 193 ~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~~~ 270 (315)
T 1ixk_A 193 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVELL 270 (315)
T ss_dssp EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEEE
T ss_pred EeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCEEe
Confidence 731 1 111 1111 147899999999999999998643222 223446677777776554
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.80 E-value=8.1e-09 Score=113.78 Aligned_cols=113 Identities=15% Similarity=0.161 Sum_probs=75.3
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCCC--cEEecCCCC
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGFP--AVVSPLGNR 364 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL~--~i~~~~dt~ 364 (689)
..|.+.+.+.+.. . ...+|||||||+|.++..++.. .|+++|+++ .. ..+.+.+...|+. ..+...+..
T Consensus 144 ~~~~~~il~~l~~---~-~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l-~~A~~~~~~~gl~~~v~~~~~d~~ 217 (480)
T 3b3j_A 144 GTYQRAILQNHTD---F-KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MA-QHAEVLVKSNNLTDRIVVIPGKVE 217 (480)
T ss_dssp HHHHHHHHHTGGG---T-TTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HH-HHHHHHHHHTTCTTTEEEEESCTT
T ss_pred HHHHHHHHHhhhh---c-CCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HH-HHHHHHHHHcCCCCcEEEEECchh
Confidence 3555555554432 1 3579999999999998877754 589999865 22 2223334444663 344556666
Q ss_pred CCCCCCCCcceEEecccccccc-ccHHHHHHHHHhccCCCcEEEEE
Q 044932 365 RLPFPSGVFDAIHCDGCSITWH-AHGGKLLLEMNRILRPSGYFILS 409 (689)
Q Consensus 365 ~LPFpD~SFDlVhcs~cli~W~-~d~~~aL~EI~RVLRPGG~fVIs 409 (689)
.++++ ++||+|+|.....++. ++....|.++.|+|||||++++.
T Consensus 218 ~~~~~-~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 218 EVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp TCCCS-SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred hCccC-CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 77777 6899999865433433 33456788999999999999864
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.80 E-value=9.4e-09 Score=104.31 Aligned_cols=118 Identities=14% Similarity=0.067 Sum_probs=77.0
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCc-EEecCCCCCCCCCCCCcceEEecccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPA-VVSPLGNRRLPFPSGVFDAIHCDGCS 382 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~-i~~~~dt~~LPFpD~SFDlVhcs~cl 382 (689)
...+|||+|||+|.++..++.. .|+++|+++... ..+.+.+...++.. .+...+...+|+ +++||+|++....
T Consensus 119 ~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av-~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 119 ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAY-HYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYVH 196 (272)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHH-HHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCCS
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECCcc
Confidence 3578999999999999887753 599999987422 12222233346543 344556555555 5799999876422
Q ss_pred ccccccHHHHHHHHHhccCCCcEEEEEcCCCch---hH-HHHHHHHHHhcceeE
Q 044932 383 ITWHAHGGKLLLEMNRILRPSGYFILSTKHDSI---EE-EEALTTLTASICWNI 432 (689)
Q Consensus 383 i~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~l---e~-~~~ie~La~~l~W~~ 432 (689)
....++.++.|+|+|||+++++.....- +. .+.++.+.+.+++..
T Consensus 197 -----~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (272)
T 3a27_A 197 -----KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKL 245 (272)
T ss_dssp -----SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEE
T ss_pred -----cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCCee
Confidence 4457899999999999999998754311 11 233455555555443
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.5e-08 Score=99.54 Aligned_cols=93 Identities=17% Similarity=0.222 Sum_probs=65.0
Q ss_pred CCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHH----cCCCc--EEecCCCCC-C----------
Q 044932 309 IRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALE----RGFPA--VVSPLGNRR-L---------- 366 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~e----RGL~~--i~~~~dt~~-L---------- 366 (689)
..+|||+|||+|.++..|+. ..|+++|+++. +++.|.+ .|+.. .+...+... +
T Consensus 61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~-----~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~ 135 (239)
T 2hnk_A 61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEE-----WTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAP 135 (239)
T ss_dssp CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHH-----HHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCC
T ss_pred cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHH-----HHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccc
Confidence 46899999999998887763 35899998863 4444444 35532 233333211 1
Q ss_pred ----CCCC--CCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 367 ----PFPS--GVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 367 ----PFpD--~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
.|++ ++||+|++... ..+...+|.++.++|||||+|++.+
T Consensus 136 ~~~~~f~~~~~~fD~I~~~~~----~~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 136 SWASDFAFGPSSIDLFFLDAD----KENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp GGGTTTCCSTTCEEEEEECSC----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cccccccCCCCCcCEEEEeCC----HHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 2554 89999998632 2345689999999999999999976
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.78 E-value=1e-08 Score=99.06 Aligned_cols=112 Identities=14% Similarity=0.160 Sum_probs=69.6
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCC--------C---CCCcc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPF--------P---SGVFD 374 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPF--------p---D~SFD 374 (689)
+..+|||+|||+|.++..++.. .|+++|+++... ..++. +...|....+. + .++||
T Consensus 25 ~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~---------~~~v~--~~~~D~~~~~~~~~~~~~~~~~~~~~~D 93 (191)
T 3dou_A 25 KGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEE---------IAGVR--FIRCDIFKETIFDDIDRALREEGIEKVD 93 (191)
T ss_dssp TTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCC---------CTTCE--EEECCTTSSSHHHHHHHHHHHHTCSSEE
T ss_pred CCCEEEEEeecCCHHHHHHHHcCCcEEEEecccccc---------CCCeE--EEEccccCHHHHHHHHHHhhcccCCcce
Confidence 3579999999999999998865 499999998421 01232 33344444331 1 14999
Q ss_pred eEEeccc---ccccccc-------HHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEE
Q 044932 375 AIHCDGC---SITWHAH-------GGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 375 lVhcs~c---li~W~~d-------~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v 433 (689)
+|+|... .-.|..+ ...+|.++.|+|||||.|++..-.... ...+...++. .|..+
T Consensus 94 ~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~--~~~~~~~l~~-~F~~v 159 (191)
T 3dou_A 94 DVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM--TNDFIAIWRK-NFSSY 159 (191)
T ss_dssp EEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH--HHHHHHHHGG-GEEEE
T ss_pred EEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC--HHHHHHHHHH-hcCEE
Confidence 9998531 1111111 246789999999999999987644322 1234444544 35554
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.2e-08 Score=107.68 Aligned_cols=113 Identities=16% Similarity=0.164 Sum_probs=77.6
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCCCc--EEecCCCC
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGFPA--VVSPLGNR 364 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL~~--i~~~~dt~ 364 (689)
..|.+.|.+-...+ ..++|||||||+|.++...+.. .|+++|.++ +...+.+.+...|+.. .+...+.+
T Consensus 69 ~aY~~Ai~~~~~~~----~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~--~~~~a~~~~~~n~~~~~i~~i~~~~~ 142 (376)
T 4hc4_A 69 DAYRLGILRNWAAL----RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA--IWQQAREVVRFNGLEDRVHVLPGPVE 142 (376)
T ss_dssp HHHHHHHHTTHHHH----TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST--THHHHHHHHHHTTCTTTEEEEESCTT
T ss_pred HHHHHHHHhCHHhc----CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH--HHHHHHHHHHHcCCCceEEEEeeeee
Confidence 57777776433222 2478999999999877655543 599999886 2344455666677653 34445667
Q ss_pred CCCCCCCCcceEEec--cccccccccHHHHHHHHHhccCCCcEEEEE
Q 044932 365 RLPFPSGVFDAIHCD--GCSITWHAHGGKLLLEMNRILRPSGYFILS 409 (689)
Q Consensus 365 ~LPFpD~SFDlVhcs--~cli~W~~d~~~aL~EI~RVLRPGG~fVIs 409 (689)
.+.+| ..||+|+|- ...+.+......++...+|.|+|||.++-+
T Consensus 143 ~~~lp-e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 143 TVELP-EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp TCCCS-SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred eecCC-ccccEEEeecccccccccchhhhHHHHHHhhCCCCceECCc
Confidence 77777 789999973 222333345678888999999999998754
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.8e-09 Score=102.08 Aligned_cols=93 Identities=18% Similarity=0.224 Sum_probs=66.1
Q ss_pred CCCeEEEECCccchhHHHhhc--C-------CeEEEEcCCcccHHHHHHHHHHc----C-----C-CcEEecCCCCCCC-
Q 044932 308 NIRVVLEIGSADLSFVASLLA--K-------EVLTLTVGLKDDLVDLAQVALER----G-----F-PAVVSPLGNRRLP- 367 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~--~-------~V~gmDIsp~D~seamlq~A~eR----G-----L-~~i~~~~dt~~LP- 367 (689)
...+|||||||+|.++..|+. . .|+++|+++. +++.|.++ + . ...+...+....+
T Consensus 80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~-----~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 154 (227)
T 2pbf_A 80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKD-----LVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNE 154 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHH-----HHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCH
T ss_pred CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHH-----HHHHHHHHHHHcCccccccCCEEEEECChHhccc
Confidence 357899999999998877764 2 6899998864 44444433 4 2 2334455555554
Q ss_pred ---CCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 368 ---FPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 368 ---FpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+++++||+|++.... + .++.++.++|||||++++..++
T Consensus 155 ~~~~~~~~fD~I~~~~~~-~------~~~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 155 EEKKELGLFDAIHVGASA-S------ELPEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HHHHHHCCEEEEEECSBB-S------SCCHHHHHHEEEEEEEEEEEEE
T ss_pred ccCccCCCcCEEEECCch-H------HHHHHHHHhcCCCcEEEEEEcc
Confidence 556899999987543 3 2468899999999999998764
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.77 E-value=3.5e-09 Score=104.49 Aligned_cols=96 Identities=15% Similarity=0.120 Sum_probs=58.2
Q ss_pred CCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHH----cCCC--cEEecCCCCCC---CCC---CCC
Q 044932 309 IRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALE----RGFP--AVVSPLGNRRL---PFP---SGV 372 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~e----RGL~--~i~~~~dt~~L---PFp---D~S 372 (689)
..+|||+|||+|.++..|+. ..|+++|+++. |++.|.+ .++. ..+...+...+ +++ +++
T Consensus 66 ~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~-----~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 140 (254)
T 2h00_A 66 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDM-----CFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEII 140 (254)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHH-----HHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCC
T ss_pred CCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHH-----HHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCc
Confidence 56899999999998877664 46999999874 4444443 3554 34444454331 455 368
Q ss_pred cceEEecccccccc--------------ccHHHHHHHHHhccCCCcEEEEE
Q 044932 373 FDAIHCDGCSITWH--------------AHGGKLLLEMNRILRPSGYFILS 409 (689)
Q Consensus 373 FDlVhcs~cli~W~--------------~d~~~aL~EI~RVLRPGG~fVIs 409 (689)
||+|+|..-.++.. .....++.++.|+|||||.+++.
T Consensus 141 fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 141 YDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp BSEEEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred ccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 99999863222111 01124567888888888877654
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.7e-08 Score=98.85 Aligned_cols=93 Identities=18% Similarity=0.151 Sum_probs=65.5
Q ss_pred CCCeEEEECCccchhHHHhhc---CCeEEEEcCCcccHHHHHHHHHH----cCCCc-EEecCCCCCCCCCCCC-cceEEe
Q 044932 308 NIRVVLEIGSADLSFVASLLA---KEVLTLTVGLKDDLVDLAQVALE----RGFPA-VVSPLGNRRLPFPSGV-FDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~---~~V~gmDIsp~D~seamlq~A~e----RGL~~-i~~~~dt~~LPFpD~S-FDlVhc 378 (689)
...+|||+|||+|.++..|+. ..|+++|+++. +++.|.+ .|+.. .+...+. .+++++.+ ||+|++
T Consensus 91 ~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~-----~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~Ii~ 164 (235)
T 1jg1_A 91 PGMNILEVGTGSGWNAALISEIVKTDVYTIERIPE-----LVEFAKRNLERAGVKNVHVILGDG-SKGFPPKAPYDVIIV 164 (235)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHH-----HHHHHHHHHHHTTCCSEEEEESCG-GGCCGGGCCEEEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHH-----HHHHHHHHHHHcCCCCcEEEECCc-ccCCCCCCCccEEEE
Confidence 346899999999999887765 46999998863 4444444 35433 3334443 45666554 999998
Q ss_pred ccccccccccHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 379 DGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
.....+ +..++.++|+|||++++..+..
T Consensus 165 ~~~~~~-------~~~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 165 TAGAPK-------IPEPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp CSBBSS-------CCHHHHHTEEEEEEEEEEECSS
T ss_pred CCcHHH-------HHHHHHHhcCCCcEEEEEEecC
Confidence 754432 2348899999999999998753
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.76 E-value=6.7e-09 Score=101.16 Aligned_cols=94 Identities=14% Similarity=0.123 Sum_probs=67.2
Q ss_pred CCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHc----CCC--cEEecCCCCC-CCCC--CCCcce
Q 044932 309 IRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALER----GFP--AVVSPLGNRR-LPFP--SGVFDA 375 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eR----GL~--~i~~~~dt~~-LPFp--D~SFDl 375 (689)
..+|||+|||+|.++..|+. ..|+++|+++ .+++.|.++ |+. ..+...+... +|+. +++||+
T Consensus 55 ~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~-----~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~ 129 (233)
T 2gpy_A 55 PARILEIGTAIGYSAIRMAQALPEATIVSIERDE-----RRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDV 129 (233)
T ss_dssp CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCH-----HHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEE
T ss_pred CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCH-----HHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccE
Confidence 46899999999998887764 3589999876 345555443 553 3344455433 2433 589999
Q ss_pred EEeccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 376 IHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 376 Vhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
|++... ..+...+|.++.++|||||++++.+.
T Consensus 130 I~~~~~----~~~~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 130 LFIDAA----KGQYRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp EEEEGG----GSCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred EEECCC----HHHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 997543 22567899999999999999999853
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.76 E-value=6e-09 Score=101.34 Aligned_cols=92 Identities=15% Similarity=0.239 Sum_probs=64.2
Q ss_pred CCCeEEEECCccchhHHHhhc----------CCeEEEEcCCcccHHHHHHHHHHc----C-----C-CcEEecCCCCCCC
Q 044932 308 NIRVVLEIGSADLSFVASLLA----------KEVLTLTVGLKDDLVDLAQVALER----G-----F-PAVVSPLGNRRLP 367 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~----------~~V~gmDIsp~D~seamlq~A~eR----G-----L-~~i~~~~dt~~LP 367 (689)
...+|||+|||+|.++..|+. ..|+++|+++. +++.|.++ + . ...+...+... +
T Consensus 84 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~-----~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~ 157 (227)
T 1r18_A 84 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAE-----LVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-G 157 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHH-----HHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-C
T ss_pred CCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHH-----HHHHHHHHHHhcCccccCCCceEEEECCccc-C
Confidence 356899999999998877764 26899998864 44444332 2 1 22334444433 5
Q ss_pred CCC-CCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 368 FPS-GVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 368 FpD-~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+++ ++||+|++.....+ ++.++.++|||||++++...+
T Consensus 158 ~~~~~~fD~I~~~~~~~~-------~~~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 158 YPPNAPYNAIHVGAAAPD-------TPTELINQLASGGRLIVPVGP 196 (227)
T ss_dssp CGGGCSEEEEEECSCBSS-------CCHHHHHTEEEEEEEEEEESC
T ss_pred CCcCCCccEEEECCchHH-------HHHHHHHHhcCCCEEEEEEec
Confidence 665 79999998754322 347899999999999998765
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.74 E-value=5.5e-08 Score=98.28 Aligned_cols=130 Identities=18% Similarity=0.113 Sum_probs=86.4
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCc--EEecCCCCCC
Q 044932 293 LESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPA--VVSPLGNRRL 366 (689)
Q Consensus 293 id~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~--i~~~~dt~~L 366 (689)
+..+..+++ ...+|||||||+|.++.+|+.. .|+++|+++... ..+.+.+...|+.. .+...|....
T Consensus 12 L~~i~~~v~------~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al-~~A~~N~~~~gl~~~I~~~~gD~l~~ 84 (230)
T 3lec_A 12 LQKVANYVP------KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPY-QSALKNVSEHGLTSKIDVRLANGLSA 84 (230)
T ss_dssp HHHHHTTSC------TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHH-HHHHHHHHHTTCTTTEEEEECSGGGG
T ss_pred HHHHHHhCC------CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECchhhc
Confidence 455666654 2468999999999999888764 389999987422 12222233346643 3444554444
Q ss_pred CCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEee
Q 044932 367 PFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHK 436 (689)
Q Consensus 367 PFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~ 436 (689)
+.++..||+|+.++..- .-...+|.+..+.|+++|+|+++.... .+.+.+.+...+|..+...
T Consensus 85 ~~~~~~~D~IviaGmGg---~lI~~IL~~~~~~l~~~~~lIlqp~~~----~~~lr~~L~~~Gf~i~~E~ 147 (230)
T 3lec_A 85 FEEADNIDTITICGMGG---RLIADILNNDIDKLQHVKTLVLQPNNR----EDDLRKWLAANDFEIVAED 147 (230)
T ss_dssp CCGGGCCCEEEEEEECH---HHHHHHHHHTGGGGTTCCEEEEEESSC----HHHHHHHHHHTTEEEEEEE
T ss_pred cccccccCEEEEeCCch---HHHHHHHHHHHHHhCcCCEEEEECCCC----hHHHHHHHHHCCCEEEEEE
Confidence 45545799987543210 012368888899999999999998543 3458888999999987654
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.74 E-value=5.9e-08 Score=105.51 Aligned_cols=121 Identities=15% Similarity=0.153 Sum_probs=79.3
Q ss_pred CCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHH----cCCC-cEEecCCCCCCC--CCCCCcce
Q 044932 308 NIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALE----RGFP-AVVSPLGNRRLP--FPSGVFDA 375 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~e----RGL~-~i~~~~dt~~LP--FpD~SFDl 375 (689)
...+|||+|||+|..+..|+. ..|+++|+++. +++.+.+ .|+. ..+...|...++ |++++||+
T Consensus 259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~-----~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~ 333 (450)
T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKM-----RMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADK 333 (450)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHH-----HHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEE
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHH-----HHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCE
Confidence 346899999999998877764 35899998863 4444433 3664 345556666665 77789999
Q ss_pred EEe----cc-ccccccccH----------------HHHHHHHHhccCCCcEEEEEcCCCch-hHHHHHHHHHHhc-ceeE
Q 044932 376 IHC----DG-CSITWHAHG----------------GKLLLEMNRILRPSGYFILSTKHDSI-EEEEALTTLTASI-CWNI 432 (689)
Q Consensus 376 Vhc----s~-cli~W~~d~----------------~~aL~EI~RVLRPGG~fVIsdp~~~l-e~~~~ie~La~~l-~W~~ 432 (689)
|++ +. ..++-.++. ..+|.++.++|||||+|++++-.-.. +....+..+++.. +|+.
T Consensus 334 Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~~~~~~ 413 (450)
T 2yxl_A 334 VLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPEFKL 413 (450)
T ss_dssp EEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCSSCEE
T ss_pred EEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEE
Confidence 995 22 111111111 46899999999999999998754332 2233466666664 5655
Q ss_pred E
Q 044932 433 L 433 (689)
Q Consensus 433 v 433 (689)
.
T Consensus 414 ~ 414 (450)
T 2yxl_A 414 V 414 (450)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.4e-08 Score=106.78 Aligned_cols=120 Identities=16% Similarity=-0.011 Sum_probs=76.6
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH----cCCC---cEEecCCCCCCC-C---CCCCcce
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE----RGFP---AVVSPLGNRRLP-F---PSGVFDA 375 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e----RGL~---~i~~~~dt~~LP-F---pD~SFDl 375 (689)
..+|||+|||+|.++..++.. .|+++|+++. +++.|.+ .++. ..+...|...+. . .+++||+
T Consensus 154 ~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~-----al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~ 228 (332)
T 2igt_A 154 PLKVLNLFGYTGVASLVAAAAGAEVTHVDASKK-----AIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI 228 (332)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEECSCHH-----HHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred CCcEEEcccccCHHHHHHHHcCCEEEEEECCHH-----HHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceE
Confidence 468999999999999888754 5889998764 4544443 3554 344445543321 1 1579999
Q ss_pred EEeccc---------cccccccHHHHHHHHHhccCCCcEEEEEcCCCchh---H-HHHHHHHHHhcceeEE
Q 044932 376 IHCDGC---------SITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIE---E-EEALTTLTASICWNIL 433 (689)
Q Consensus 376 Vhcs~c---------li~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le---~-~~~ie~La~~l~W~~v 433 (689)
|++.-- ..++..+...+|.++.++|+|||+|++........ . ...+.+.+..+++...
T Consensus 229 Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 229 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA 299 (332)
T ss_dssp EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred EEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 998311 11223345688999999999999988876443221 1 2334445556666553
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=5.6e-09 Score=116.67 Aligned_cols=97 Identities=18% Similarity=0.092 Sum_probs=69.8
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHH----HcC-CCcEEecCCCCCC--CCCCCCcceEEe
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVAL----ERG-FPAVVSPLGNRRL--PFPSGVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~----eRG-L~~i~~~~dt~~L--PFpD~SFDlVhc 378 (689)
...+|||||||+|.++..|+.. .|+|+|+++. +++.|+ +.| +...|...+.+.| ++.+++||+|+|
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~-----~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~ 140 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQE-----NINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIG 140 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHH-----HHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEE
T ss_pred CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHH-----HHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEE
Confidence 3568999999999999988865 4999998864 444443 445 4556666666666 577899999999
Q ss_pred ccccccccccHH--HHHHHHHhccCCCcEEEEEc
Q 044932 379 DGCSITWHAHGG--KLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 379 s~cli~W~~d~~--~aL~EI~RVLRPGG~fVIsd 410 (689)
..++.| ..++. ..+..+.+.|+++|..++..
T Consensus 141 ~e~~eh-v~~~~~~~~~~~~~~tl~~~~~~~~~~ 173 (569)
T 4azs_A 141 LSVFHH-IVHLHGIDEVKRLLSRLADVTQAVILE 173 (569)
T ss_dssp ESCHHH-HHHHHCHHHHHHHHHHHHHHSSEEEEE
T ss_pred Ccchhc-CCCHHHHHHHHHHHHHhccccceeeEE
Confidence 876644 55543 34556777788888766653
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.71 E-value=5.7e-08 Score=99.02 Aligned_cols=125 Identities=17% Similarity=0.082 Sum_probs=84.7
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHH----cCCCc--EEecCC
Q 044932 293 LESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALE----RGFPA--VVSPLG 362 (689)
Q Consensus 293 id~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~e----RGL~~--i~~~~d 362 (689)
+..+.++++ ...+|||||||+|.++.+|+.. .|+++|+++. +++.|.+ .|+.. .+...|
T Consensus 12 L~~i~~~v~------~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~-----al~~A~~N~~~~gl~~~I~v~~gD 80 (244)
T 3gnl_A 12 LEKVASYIT------KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDG-----PFQSAQKQVRSSGLTEQIDVRKGN 80 (244)
T ss_dssp HHHHHTTCC------SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHH-----HHHHHHHHHHHTTCTTTEEEEECS
T ss_pred HHHHHHhCC------CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHH-----HHHHHHHHHHHcCCCceEEEEecc
Confidence 455666664 2468999999999999888764 3899999874 4444443 46643 344444
Q ss_pred CCCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEe
Q 044932 363 NRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 363 t~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~ 435 (689)
......++..||+|+.++..- .-...+|.+..+.|+++|+|+++.... ...+.+.+...+|..+..
T Consensus 81 ~l~~~~~~~~~D~IviagmGg---~lI~~IL~~~~~~L~~~~~lIlq~~~~----~~~lr~~L~~~Gf~i~~E 146 (244)
T 3gnl_A 81 GLAVIEKKDAIDTIVIAGMGG---TLIRTILEEGAAKLAGVTKLILQPNIA----AWQLREWSEQNNWLITSE 146 (244)
T ss_dssp GGGGCCGGGCCCEEEEEEECH---HHHHHHHHHTGGGGTTCCEEEEEESSC----HHHHHHHHHHHTEEEEEE
T ss_pred hhhccCccccccEEEEeCCch---HHHHHHHHHHHHHhCCCCEEEEEcCCC----hHHHHHHHHHCCCEEEEE
Confidence 444434434699987543210 012278888999999999999997542 345778888899998654
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=3.2e-08 Score=103.23 Aligned_cols=116 Identities=9% Similarity=0.108 Sum_probs=78.8
Q ss_pred CCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSIT 384 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~ 384 (689)
..+|||||||+|.++..|+.. .++++|+ | .+++.|.+.. ...+...|... |+| +||+|++..++.+
T Consensus 194 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-----~~~~~a~~~~-~v~~~~~d~~~-~~~--~~D~v~~~~vlh~ 263 (358)
T 1zg3_A 194 LESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-P-----QVVGNLTGNE-NLNFVGGDMFK-SIP--SADAVLLKWVLHD 263 (358)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-H-----HHHSSCCCCS-SEEEEECCTTT-CCC--CCSEEEEESCGGG
T ss_pred CCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-H-----HHHhhcccCC-CcEEEeCccCC-CCC--CceEEEEcccccC
Confidence 579999999999998888753 3677786 3 3555443311 12333445444 677 4999999876655
Q ss_pred ccccHH--HHHHHHHhccCC---CcEEEEEcCC-----Cc-----hh----------------HHHHHHHHHHhcceeEE
Q 044932 385 WHAHGG--KLLLEMNRILRP---SGYFILSTKH-----DS-----IE----------------EEEALTTLTASICWNIL 433 (689)
Q Consensus 385 W~~d~~--~aL~EI~RVLRP---GG~fVIsdp~-----~~-----le----------------~~~~ie~La~~l~W~~v 433 (689)
| .+.. .+|.++.|+|+| ||+|+|.+.. .. .. ...++..+++..+|+.+
T Consensus 264 ~-~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 342 (358)
T 1zg3_A 264 W-NDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSY 342 (358)
T ss_dssp S-CHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEE
T ss_pred C-CHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCee
Confidence 4 4544 899999999999 9999997531 10 00 12457778888888776
Q ss_pred Ee
Q 044932 434 AH 435 (689)
Q Consensus 434 ~~ 435 (689)
..
T Consensus 343 ~~ 344 (358)
T 1zg3_A 343 KI 344 (358)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.1e-07 Score=102.50 Aligned_cols=124 Identities=15% Similarity=0.117 Sum_probs=79.8
Q ss_pred CCCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCC--CCCCCcceEEe---
Q 044932 308 NIRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLP--FPSGVFDAIHC--- 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LP--FpD~SFDlVhc--- 378 (689)
...+|||+|||+|.++..|+. ..|+++|+++... ....+.+...|+...+...|...++ |++++||+|++
T Consensus 246 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l-~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 324 (429)
T 1sqg_A 246 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRL-SRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAP 324 (429)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTH-HHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECC
T ss_pred CcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeCC
Confidence 356899999999998887764 3599999998533 2223333444766556666766665 67789999985
Q ss_pred -ccc-cccccccH----------------HHHHHHHHhccCCCcEEEEEcCCCch-hHHHHHHHHHHhc-ceeE
Q 044932 379 -DGC-SITWHAHG----------------GKLLLEMNRILRPSGYFILSTKHDSI-EEEEALTTLTASI-CWNI 432 (689)
Q Consensus 379 -s~c-li~W~~d~----------------~~aL~EI~RVLRPGG~fVIsdp~~~l-e~~~~ie~La~~l-~W~~ 432 (689)
+.. .++-.++. ..+|.++.++|||||++++++-.-.. +....+..+++.. .|+.
T Consensus 325 csg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~~~~~~~ 398 (429)
T 1sqg_A 325 CSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAEL 398 (429)
T ss_dssp CCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTCEE
T ss_pred CCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHhCCCCEE
Confidence 221 11111111 36799999999999999998743222 2223455555543 4544
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=5.6e-08 Score=97.84 Aligned_cols=129 Identities=17% Similarity=0.156 Sum_probs=83.3
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCc--EEecCCCCCC
Q 044932 293 LESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPA--VVSPLGNRRL 366 (689)
Q Consensus 293 id~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~--i~~~~dt~~L 366 (689)
+..+..+++ ...+|||||||+|.++.+|+.. .|+++|+++... ..+.+.+...|+.. .+...|.. -
T Consensus 6 L~~l~~~v~------~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al-~~A~~N~~~~gl~~~i~~~~~d~l-~ 77 (225)
T 3kr9_A 6 LELVASFVS------QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPY-QSAVKNVEAHGLKEKIQVRLANGL-A 77 (225)
T ss_dssp HHHHHTTSC------TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHH-HHHHHHHHHTTCTTTEEEEECSGG-G
T ss_pred HHHHHHhCC------CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCceEEEEECchh-h
Confidence 345556554 2468999999999999888764 389999987422 12223333446653 33333331 1
Q ss_pred CCCCC-CcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEee
Q 044932 367 PFPSG-VFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHK 436 (689)
Q Consensus 367 PFpD~-SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~ 436 (689)
+++.+ .||+|+.++..- .-...+|.+....|+|+|+|+++.... ...+...+...+|..+...
T Consensus 78 ~l~~~~~~D~IviaG~Gg---~~i~~Il~~~~~~L~~~~~lVlq~~~~----~~~vr~~L~~~Gf~i~~e~ 141 (225)
T 3kr9_A 78 AFEETDQVSVITIAGMGG---RLIARILEEGLGKLANVERLILQPNNR----EDDLRIWLQDHGFQIVAES 141 (225)
T ss_dssp GCCGGGCCCEEEEEEECH---HHHHHHHHHTGGGCTTCCEEEEEESSC----HHHHHHHHHHTTEEEEEEE
T ss_pred hcccCcCCCEEEEcCCCh---HHHHHHHHHHHHHhCCCCEEEEECCCC----HHHHHHHHHHCCCEEEEEE
Confidence 34433 699887543210 012378889999999999999977632 2447788899999987653
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.9e-08 Score=99.33 Aligned_cols=93 Identities=13% Similarity=0.120 Sum_probs=65.2
Q ss_pred CCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHH----HcCCC--cEEecCCCCC-CC-C-----CC
Q 044932 309 IRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVAL----ERGFP--AVVSPLGNRR-LP-F-----PS 370 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~----eRGL~--~i~~~~dt~~-LP-F-----pD 370 (689)
.++|||||||+|..+..|+. ..|+++|+++. +++.|+ ..|+. ..+...++.. +| + ++
T Consensus 80 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~-----~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~ 154 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKE-----NYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNH 154 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCH-----HHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGT
T ss_pred cCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHH-----HHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCC
Confidence 46899999999998877763 35999999884 344443 34553 2333344322 33 2 25
Q ss_pred CCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 371 GVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 371 ~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
++||+|++... ..+...+|.++.|+|||||+|++..
T Consensus 155 ~~fD~V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 155 GSYDFIFVDAD----KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp TCBSEEEECSC----STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred CCEEEEEEcCc----hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 89999997532 3356689999999999999999875
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.1e-07 Score=100.70 Aligned_cols=117 Identities=15% Similarity=0.111 Sum_probs=78.2
Q ss_pred CCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHH----cCC-CcEEecCCCCC-CCC-CCCCcceEE
Q 044932 309 IRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALE----RGF-PAVVSPLGNRR-LPF-PSGVFDAIH 377 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~e----RGL-~~i~~~~dt~~-LPF-pD~SFDlVh 377 (689)
..+|||+| |+|.++..++. ..|+++|+++. |++.|.+ .|+ ...+...|... +|. .+++||+|+
T Consensus 173 ~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~-----~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi 246 (373)
T 2qm3_A 173 NKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDER-----LTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFI 246 (373)
T ss_dssp TCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHH-----HHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEE
T ss_pred CCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHH-----HHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEE
Confidence 57999999 99998877763 25899998864 5555544 366 34455666666 774 467999999
Q ss_pred eccccccccccHHHHHHHHHhccCCCc-EEEEEcCC--CchhHHHHHHHHHH-hcceeEE
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSG-YFILSTKH--DSIEEEEALTTLTA-SICWNIL 433 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG-~fVIsdp~--~~le~~~~ie~La~-~l~W~~v 433 (689)
+......+ ....+|.++.|+||||| .++++... .....+..+..++. .+++...
T Consensus 247 ~~~p~~~~--~~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 304 (373)
T 2qm3_A 247 TDPPETLE--AIRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVIT 304 (373)
T ss_dssp ECCCSSHH--HHHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEEE
T ss_pred ECCCCchH--HHHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcchh
Confidence 86422221 24688999999999999 44555443 33322344666666 7777653
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=7.8e-08 Score=99.76 Aligned_cols=98 Identities=19% Similarity=0.218 Sum_probs=66.3
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc------CC---CcEEecCCCCC-CCCCCCCc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER------GF---PAVVSPLGNRR-LPFPSGVF 373 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR------GL---~~i~~~~dt~~-LPFpD~SF 373 (689)
..++|||||||+|.++..++.. .|+++|+++ .+++.|+++ ++ ...+...|+.. ++..+++|
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~-----~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~f 169 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDE-----DVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAF 169 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCH-----HHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCE
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCH-----HHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCc
Confidence 4579999999999999988764 488999886 456665543 21 22334444432 44556899
Q ss_pred ceEEeccccccccc----cHHHHHHHHHhccCCCcEEEEEcC
Q 044932 374 DAIHCDGCSITWHA----HGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 374 DlVhcs~cli~W~~----d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
|+|++... .++.. ....++.++.|+|+|||+|++...
T Consensus 170 D~Ii~d~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 210 (304)
T 2o07_A 170 DVIITDSS-DPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 210 (304)
T ss_dssp EEEEEECC------------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEECCC-CCCCcchhhhHHHHHHHHHhccCCCeEEEEecC
Confidence 99997432 22211 124689999999999999999863
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.6e-08 Score=97.04 Aligned_cols=94 Identities=16% Similarity=0.148 Sum_probs=66.2
Q ss_pred CCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHH----cCCC--cEEecCCC----CCCCCCC--C
Q 044932 309 IRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALE----RGFP--AVVSPLGN----RRLPFPS--G 371 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~e----RGL~--~i~~~~dt----~~LPFpD--~ 371 (689)
.++|||+|||+|.++.+|+.. .|+++|+++. +++.|.+ .|+. ..+...+. ..+++.+ +
T Consensus 73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~-----~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~ 147 (232)
T 3cbg_A 73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPN-----ATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLP 147 (232)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHH-----HHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCC
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHH-----HHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCC
Confidence 468999999999998888753 4899998863 4444443 3553 22333332 2344444 7
Q ss_pred CcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 372 VFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 372 SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
+||+|++... ..+...+|.++.|+|||||+|++.+.
T Consensus 148 ~fD~V~~d~~----~~~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 148 EFDLIFIDAD----KRNYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp CEEEEEECSC----GGGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred CcCEEEECCC----HHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 9999997532 23556899999999999999999753
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2e-08 Score=104.27 Aligned_cols=114 Identities=12% Similarity=0.136 Sum_probs=72.4
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccc--hhHHHhh-----cCCeEEEEcCCcccHHHHHHHHHHc--CCC---cE
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADL--SFVASLL-----AKEVLTLTVGLKDDLVDLAQVALER--GFP---AV 357 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtG--sfaa~La-----~~~V~gmDIsp~D~seamlq~A~eR--GL~---~i 357 (689)
..|+....++++. .. .++.|||||||++ .+...++ +..|+++|.+| .|++.|+++ +.+ ..
T Consensus 63 r~fl~rav~~l~~-~~--g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp-----~mLa~Ar~~l~~~~~~~~~ 134 (277)
T 3giw_A 63 RDWMNRAVAHLAK-EA--GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDP-----IVLTLSQGLLASTPEGRTA 134 (277)
T ss_dssp HHHHHHHHHHHHH-TS--CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCH-----HHHHTTHHHHCCCSSSEEE
T ss_pred HHHHHHHHHHhcc-cc--CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCCh-----HHHHHHHHHhccCCCCcEE
Confidence 3555555555431 11 4789999999973 2222222 34699999886 577777664 211 33
Q ss_pred EecCCCCCCC----CC--CCCcc-----eEEecccccccccc---HHHHHHHHHhccCCCcEEEEEcCC
Q 044932 358 VSPLGNRRLP----FP--SGVFD-----AIHCDGCSITWHAH---GGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 358 ~~~~dt~~LP----Fp--D~SFD-----lVhcs~cli~W~~d---~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+...|...++ .+ +++|| +|++. ..+||..+ +..+|.++.++|+|||+|+++...
T Consensus 135 ~v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~-avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~ 202 (277)
T 3giw_A 135 YVEADMLDPASILDAPELRDTLDLTRPVALTVI-AIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGT 202 (277)
T ss_dssp EEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEE-SCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEEC
T ss_pred EEEecccChhhhhcccccccccCcCCcchHHhh-hhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEecc
Confidence 4455554431 11 35666 35554 45677766 468999999999999999999644
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.67 E-value=1e-07 Score=90.57 Aligned_cols=107 Identities=8% Similarity=-0.014 Sum_probs=69.3
Q ss_pred CCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITW 385 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W 385 (689)
..+|||+|||+|.++..++.. .|+++|+++ .+++.|.++-....+...+...+| ++||+|++...+.++
T Consensus 52 ~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~-----~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~ 123 (200)
T 1ne2_A 52 GRSVIDAGTGNGILACGSYLLGAESVTAFDIDP-----DAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGSV 123 (200)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTBSEEEEEESCH-----HHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC---
T ss_pred CCEEEEEeCCccHHHHHHHHcCCCEEEEEECCH-----HHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchhc
Confidence 568999999999998888754 489999876 577777766323344455555554 799999987544332
Q ss_pred cc-cHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcc
Q 044932 386 HA-HGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASIC 429 (689)
Q Consensus 386 ~~-d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~ 429 (689)
.. ....++.++.|+| |+.+++. .+... ..+..++...+
T Consensus 124 ~~~~~~~~l~~~~~~~--g~~~~~~-~~~~~---~~~~~~~~~~g 162 (200)
T 1ne2_A 124 VKHSDRAFIDKAFETS--MWIYSIG-NAKAR---DFLRREFSARG 162 (200)
T ss_dssp ----CHHHHHHHHHHE--EEEEEEE-EGGGH---HHHHHHHHHHE
T ss_pred cCchhHHHHHHHHHhc--CcEEEEE-cCchH---HHHHHHHHHCC
Confidence 22 2247899999999 5544444 33322 33556666665
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=4.4e-08 Score=94.55 Aligned_cols=97 Identities=14% Similarity=0.089 Sum_probs=64.2
Q ss_pred CCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHcCCC--cEEecCCCCCC-C-CCC----CCcce
Q 044932 309 IRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALERGFP--AVVSPLGNRRL-P-FPS----GVFDA 375 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eRGL~--~i~~~~dt~~L-P-FpD----~SFDl 375 (689)
..+|||+|||+|.++.+|+.. .|+++|+++.... .+.+.+...|+. ..+...+.... + +++ ++||+
T Consensus 70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~-~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~ 148 (229)
T 2avd_A 70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPE-LGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 148 (229)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHH-HHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHH-HHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccE
Confidence 468999999999998888752 5899999884221 122222333552 23333333211 1 211 78999
Q ss_pred EEeccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 376 IHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 376 Vhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
|++... ..+...++.++.|+|||||++++.+
T Consensus 149 v~~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 149 AVVDAD----KENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp EEECSC----STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEECCC----HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 998532 2345689999999999999999965
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.63 E-value=4.3e-08 Score=103.39 Aligned_cols=99 Identities=18% Similarity=0.234 Sum_probs=68.2
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc------CC---CcEEecCCCCC-C-CCCCCC
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER------GF---PAVVSPLGNRR-L-PFPSGV 372 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR------GL---~~i~~~~dt~~-L-PFpD~S 372 (689)
..++|||||||+|.++..|+.. .|+++|+++ .+++.|+++ ++ ...+...|... + .+++++
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~-----~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~ 194 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDK-----MVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGS 194 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCH-----HHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTC
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCH-----HHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCC
Confidence 4579999999999999988864 489999886 456666543 22 23344444332 2 245689
Q ss_pred cceEEeccccccccc-c---HHHHHHHHHhccCCCcEEEEEcCC
Q 044932 373 FDAIHCDGCSITWHA-H---GGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 373 FDlVhcs~cli~W~~-d---~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
||+|++... .++.. . ...++.++.|+|+|||+|++....
T Consensus 195 fDlIi~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 237 (334)
T 1xj5_A 195 YDAVIVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQAES 237 (334)
T ss_dssp EEEEEECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred ccEEEECCC-CccCcchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 999998532 12221 1 258999999999999999997433
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.5e-07 Score=96.34 Aligned_cols=110 Identities=19% Similarity=0.250 Sum_probs=71.1
Q ss_pred CCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHH----cCCC--cEEecCCCCCCCCCCCCc---ceE
Q 044932 309 IRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALE----RGFP--AVVSPLGNRRLPFPSGVF---DAI 376 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~e----RGL~--~i~~~~dt~~LPFpD~SF---DlV 376 (689)
..+|||+|||+|.++..|+.. .|+++|+++. +++.|.+ .|+. ..+...+... +++ ++| |+|
T Consensus 124 ~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~-----al~~A~~n~~~~~l~~~v~~~~~D~~~-~~~-~~f~~~D~I 196 (284)
T 1nv8_A 124 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSK-----AVEIARKNAERHGVSDRFFVRKGEFLE-PFK-EKFASIEMI 196 (284)
T ss_dssp CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHH-----HHHHHHHHHHHTTCTTSEEEEESSTTG-GGG-GGTTTCCEE
T ss_pred CCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHH-----HHHHHHHHHHHcCCCCceEEEECcchh-hcc-cccCCCCEE
Confidence 458999999999998877643 5999999863 4555443 3654 3444444433 333 589 999
Q ss_pred Eecccccc----------cc--------ccHHHHHHHHH-hccCCCcEEEEEcCCCchhHHHHHHHHHHhc
Q 044932 377 HCDGCSIT----------WH--------AHGGKLLLEMN-RILRPSGYFILSTKHDSIEEEEALTTLTASI 428 (689)
Q Consensus 377 hcs~cli~----------W~--------~d~~~aL~EI~-RVLRPGG~fVIsdp~~~le~~~~ie~La~~l 428 (689)
+|.--.+. |. .+...++.++. ++|+|||+|++........ .+..++...
T Consensus 197 vsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q~~---~v~~~~~~~ 264 (284)
T 1nv8_A 197 LSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVE---ELKKIVSDT 264 (284)
T ss_dssp EECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHH---HHTTTSTTC
T ss_pred EEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchHHH---HHHHHHHhC
Confidence 98511110 11 12237899999 9999999999976654322 344555443
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.62 E-value=2e-07 Score=95.12 Aligned_cols=99 Identities=14% Similarity=0.187 Sum_probs=68.7
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc------CC---CcEEecCCCCC-CCCCCCCc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER------GF---PAVVSPLGNRR-LPFPSGVF 373 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR------GL---~~i~~~~dt~~-LPFpD~SF 373 (689)
..++|||||||+|.++..++.. .|+++|++| .+++.|++. ++ ...+...|+.. ++..+++|
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~-----~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~f 149 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDG-----KVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQY 149 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCH-----HHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCH-----HHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCe
Confidence 4679999999999999888764 489999886 456666543 22 12344445432 34456899
Q ss_pred ceEEeccccccccc----cHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 374 DAIHCDGCSITWHA----HGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 374 DlVhcs~cli~W~~----d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
|+|++.... ++.. ....++.++.|+|+|||.|++....
T Consensus 150 D~Ii~d~~~-~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~ 191 (275)
T 1iy9_A 150 DVIMVDSTE-PVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN 191 (275)
T ss_dssp EEEEESCSS-CCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred eEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 999985322 2211 1257999999999999999998644
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.61 E-value=6.9e-08 Score=100.92 Aligned_cols=99 Identities=17% Similarity=0.097 Sum_probs=65.9
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcC------C---CcEEecCCCCC-CCCCCCCc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERG------F---PAVVSPLGNRR-LPFPSGVF 373 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRG------L---~~i~~~~dt~~-LPFpD~SF 373 (689)
..++|||||||+|.++..++.. .|+++|+++ .+++.|+++- + ...+...|+.. ++..+++|
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~-----~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~f 182 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDE-----MVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEF 182 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCH-----HHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCH-----HHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCc
Confidence 3579999999999999888754 488898876 5677776642 1 12334444332 33456899
Q ss_pred ceEEeccccccccccH----HHHHHHHHhccCCCcEEEEEcCC
Q 044932 374 DAIHCDGCSITWHAHG----GKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 374 DlVhcs~cli~W~~d~----~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
|+|++... .++.... ..++.++.|+|+|||+|++....
T Consensus 183 D~Ii~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~ 224 (314)
T 2b2c_A 183 DVIITDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQGES 224 (314)
T ss_dssp EEEEECCC--------------HHHHHHHHEEEEEEEEEECCC
T ss_pred eEEEEcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCC
Confidence 99997532 2222111 57899999999999999998643
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.60 E-value=5e-07 Score=85.82 Aligned_cols=114 Identities=13% Similarity=0.056 Sum_probs=74.3
Q ss_pred CCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHc----CCCcEEecCCCCCCCCCCCCcceEEecc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALER----GFPAVVSPLGNRRLPFPSGVFDAIHCDG 380 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eR----GL~~i~~~~dt~~LPFpD~SFDlVhcs~ 380 (689)
...+|||+|||+|.++..++.. .|+++|+++ .+++.|.++ ++...+...+...+| .+||+|++..
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~-----~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~ 120 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDK-----EAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNP 120 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCH-----HHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECC
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCH-----HHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcC
Confidence 3578999999999999888754 489999876 456666554 444445555655553 5899999864
Q ss_pred cccccc-ccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEE
Q 044932 381 CSITWH-AHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 381 cli~W~-~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v 433 (689)
-...+. .....+|.++.++| ||.+++..++. .....+..++...+|...
T Consensus 121 p~~~~~~~~~~~~l~~~~~~l--~~~~~~~~~~~--~~~~~~~~~l~~~g~~~~ 170 (207)
T 1wy7_A 121 PFGSQRKHADRPFLLKAFEIS--DVVYSIHLAKP--EVRRFIEKFSWEHGFVVT 170 (207)
T ss_dssp CCSSSSTTTTHHHHHHHHHHC--SEEEEEEECCH--HHHHHHHHHHHHTTEEEE
T ss_pred CCccccCCchHHHHHHHHHhc--CcEEEEEeCCc--CCHHHHHHHHHHCCCeEE
Confidence 322222 22357899999999 66555442221 122346667777888664
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=4.1e-08 Score=101.99 Aligned_cols=97 Identities=20% Similarity=0.229 Sum_probs=67.9
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc------C-C---CcEEecCCCCC-CCCCCCC
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER------G-F---PAVVSPLGNRR-LPFPSGV 372 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR------G-L---~~i~~~~dt~~-LPFpD~S 372 (689)
..++|||||||+|.++..++.. .|+++|+++ .+++.|+++ + + ...+...|... ++..+++
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~-----~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~ 151 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDG-----ELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEER 151 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCH-----HHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCC
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCH-----HHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCC
Confidence 4579999999999999988765 489999886 455555543 1 1 22344445433 4445789
Q ss_pred cceEEeccccccc---cc--c--HHHHHHHHHhccCCCcEEEEEc
Q 044932 373 FDAIHCDGCSITW---HA--H--GGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 373 FDlVhcs~cli~W---~~--d--~~~aL~EI~RVLRPGG~fVIsd 410 (689)
||+|++... .++ .. . ...++.++.|+|+|||+|++..
T Consensus 152 fD~Ii~d~~-~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 152 YDVVIIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEEEEEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccEEEECCC-CcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 999998632 243 11 1 2588999999999999999974
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=7.8e-08 Score=99.10 Aligned_cols=99 Identities=20% Similarity=0.183 Sum_probs=66.3
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc------CC---CcEEecCCCCC-CCCCCCCc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER------GF---PAVVSPLGNRR-LPFPSGVF 373 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR------GL---~~i~~~~dt~~-LPFpD~SF 373 (689)
...+|||||||+|.++..++.. .|+++|+++ .+++.|+++ ++ ...+...|... ++..+++|
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~-----~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~f 164 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDG-----LVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEF 164 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCH-----HHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCH-----HHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCc
Confidence 3579999999999999888864 489999886 355555543 11 22333444322 34456899
Q ss_pred ceEEeccccccccc-----cHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 374 DAIHCDGCSITWHA-----HGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 374 DlVhcs~cli~W~~-----d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
|+|++... .+|.. ....++.++.|+|+|||+|++....
T Consensus 165 D~Ii~d~~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 207 (296)
T 1inl_A 165 DVIIIDST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 207 (296)
T ss_dssp EEEEEEC-----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred eEEEEcCC-CcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence 99997421 12211 1257899999999999999998654
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.1e-07 Score=97.31 Aligned_cols=99 Identities=15% Similarity=0.143 Sum_probs=68.4
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcC---------CCcEEecCCCCC-CCCCCCCc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERG---------FPAVVSPLGNRR-LPFPSGVF 373 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRG---------L~~i~~~~dt~~-LPFpD~SF 373 (689)
..++|||||||+|.++..++.. .|+++|+++ .+++.|+++- -...+...|... ++..+++|
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~-----~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~f 152 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDE-----TVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTY 152 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCH-----HHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCH-----HHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCc
Confidence 4579999999999999888754 488999876 5677776641 112333444322 22236899
Q ss_pred ceEEecccccccccc--H--HHHHHHHHhccCCCcEEEEEcCC
Q 044932 374 DAIHCDGCSITWHAH--G--GKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 374 DlVhcs~cli~W~~d--~--~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
|+|++... .++... . ..++.++.|+|+|||+|++....
T Consensus 153 D~Ii~d~~-~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~ 194 (283)
T 2i7c_A 153 DVIIVDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 194 (283)
T ss_dssp EEEEEECC-CTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred eEEEEcCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCC
Confidence 99997432 222211 1 58999999999999999998654
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.59 E-value=8.6e-08 Score=97.59 Aligned_cols=91 Identities=16% Similarity=0.137 Sum_probs=64.3
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcC---------CCcEEecCCCCCCCCCCCCcceE
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERG---------FPAVVSPLGNRRLPFPSGVFDAI 376 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRG---------L~~i~~~~dt~~LPFpD~SFDlV 376 (689)
..++|||||||+|.++..++.. .|+++|+++ .+++.|+++- -...+...|+... . ++||+|
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~-----~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~--~-~~fD~I 143 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADE-----KILDSFISFFPHFHEVKNNKNFTHAKQLLDLD--I-KKYDLI 143 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCH-----HHHGGGTTTSTTHHHHHTCTTEEEESSGGGSC--C-CCEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCH-----HHHHHHHHHHHhhccccCCCeEEEEechHHHH--H-hhCCEE
Confidence 4579999999999998877754 488888875 4666665431 1123344444443 3 799999
Q ss_pred EeccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 377 HCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 377 hcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
++.. .++..++.++.|+|+|||.|++....
T Consensus 144 i~d~------~dp~~~~~~~~~~L~pgG~lv~~~~~ 173 (262)
T 2cmg_A 144 FCLQ------EPDIHRIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_dssp EESS------CCCHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred EECC------CChHHHHHHHHHhcCCCcEEEEEcCC
Confidence 9752 23445899999999999999997543
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=7.3e-08 Score=100.70 Aligned_cols=99 Identities=15% Similarity=0.189 Sum_probs=68.2
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcC------C---CcEEecCCCCC-CCCCCCCc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERG------F---PAVVSPLGNRR-LPFPSGVF 373 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRG------L---~~i~~~~dt~~-LPFpD~SF 373 (689)
...+|||||||+|.++..++.. .|+++|+++ .+++.|+++- + ...+...|... ++..+++|
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~-----~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~f 190 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDE-----TVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTY 190 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCH-----HHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCH-----HHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCc
Confidence 3579999999999999888764 488999876 5677776642 1 12233344322 33346899
Q ss_pred ceEEeccccccccc--c--HHHHHHHHHhccCCCcEEEEEcCC
Q 044932 374 DAIHCDGCSITWHA--H--GGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 374 DlVhcs~cli~W~~--d--~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
|+|++... .++.. . ...++.++.|+|+|||+|++....
T Consensus 191 DvIi~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 232 (321)
T 2pt6_A 191 DVIIVDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 232 (321)
T ss_dssp EEEEEECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred eEEEECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 99997532 12221 1 158899999999999999997644
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.4e-07 Score=98.88 Aligned_cols=122 Identities=12% Similarity=0.044 Sum_probs=76.6
Q ss_pred CCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCCC---cEEecCCCCC-CCC---CCCCcceEEe
Q 044932 309 IRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGFP---AVVSPLGNRR-LPF---PSGVFDAIHC 378 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL~---~i~~~~dt~~-LPF---pD~SFDlVhc 378 (689)
..+|||+|||+|.++..++.. .|+++|+++... ..+.+.+...|+. ..+...|+.. ++. ...+||+|++
T Consensus 213 ~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al-~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~ 291 (385)
T 2b78_A 213 GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSR-ALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII 291 (385)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHH-HHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEE
Confidence 468999999999999888753 599999998533 2222333445664 3444555432 221 2468999997
Q ss_pred cc--------ccccccccHHHHHHHHHhccCCCcEEEEEcCCCchh---HHHHHHHHHHhccee
Q 044932 379 DG--------CSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIE---EEEALTTLTASICWN 431 (689)
Q Consensus 379 s~--------cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le---~~~~ie~La~~l~W~ 431 (689)
.- +..........++.++.++|+|||+|+++..+.... -.+.+...+...++.
T Consensus 292 DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 355 (385)
T 2b78_A 292 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHT 355 (385)
T ss_dssp CCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCE
T ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCc
Confidence 31 111111223456788899999999999998664432 123455556666555
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.57 E-value=3.6e-08 Score=99.84 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=73.5
Q ss_pred CCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHH----cCCC-cEEecCCCCCCCC----CCCCc
Q 044932 308 NIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALE----RGFP-AVVSPLGNRRLPF----PSGVF 373 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~e----RGL~-~i~~~~dt~~LPF----pD~SF 373 (689)
...+|||+|||+|.++..|+. ..|+++|+++. +++.+.+ .|+. ..+...|...++. ++++|
T Consensus 83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~-----~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~f 157 (274)
T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKT-----RTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFF 157 (274)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHH-----HHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCE
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHH-----HHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccC
Confidence 356899999999999877764 35999999864 4444333 3664 3344455555543 35799
Q ss_pred ceEEec-ccc----cc----c--------cccHHHHHHHHHhccCCCcEEEEEcCCCch-hHHHHHHHHHHh
Q 044932 374 DAIHCD-GCS----IT----W--------HAHGGKLLLEMNRILRPSGYFILSTKHDSI-EEEEALTTLTAS 427 (689)
Q Consensus 374 DlVhcs-~cl----i~----W--------~~d~~~aL~EI~RVLRPGG~fVIsdp~~~l-e~~~~ie~La~~ 427 (689)
|+|++. -|. +. | ......+|.++.++|||||+|++++-.-.. +....+..+++.
T Consensus 158 D~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~ 229 (274)
T 3ajd_A 158 DKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQK 229 (274)
T ss_dssp EEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHH
T ss_pred CEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHHh
Confidence 999974 121 10 1 123467899999999999999998753222 222335555543
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.57 E-value=7.9e-08 Score=101.32 Aligned_cols=97 Identities=13% Similarity=0.165 Sum_probs=67.7
Q ss_pred CeEEEECCccchhHHHhhc-C---CeEEEEcCCcccHHHHHHHHHHc-CC----CcEEecCCCCCC--CCCCCCcceEEe
Q 044932 310 RVVLEIGSADLSFVASLLA-K---EVLTLTVGLKDDLVDLAQVALER-GF----PAVVSPLGNRRL--PFPSGVFDAIHC 378 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~-~---~V~gmDIsp~D~seamlq~A~eR-GL----~~i~~~~dt~~L--PFpD~SFDlVhc 378 (689)
.+|||||||+|.++.+|+. . .|+++|+++ .+++.|+++ ++ ...+...|+... .+++++||+|++
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp-----~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~ 165 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDA-----ELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIR 165 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCH-----HHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEE
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCH-----HHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEE
Confidence 4899999999999988875 2 488899876 577888775 22 123444454332 356789999997
Q ss_pred cccc---ccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 379 DGCS---ITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 379 s~cl---i~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
.... .+.+.....+|.++.|+|+|||+|++...
T Consensus 166 D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 166 DVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp CCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 4211 11111225799999999999999998764
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-07 Score=94.11 Aligned_cols=93 Identities=11% Similarity=0.098 Sum_probs=64.9
Q ss_pred CCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHH----HcCCC--cEEecCCCCC-CC-C-----CC
Q 044932 309 IRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVAL----ERGFP--AVVSPLGNRR-LP-F-----PS 370 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~----eRGL~--~i~~~~dt~~-LP-F-----pD 370 (689)
.++|||||||+|..+..|+. ..|+++|+++. +++.|+ +.|+. ..+...++.. ++ + ++
T Consensus 71 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~-----~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~ 145 (237)
T 3c3y_A 71 AKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDRE-----AYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESE 145 (237)
T ss_dssp CCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHH-----HHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCT
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHH-----HHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCC
Confidence 57899999999998877763 35899998874 444443 34664 2333344322 22 2 25
Q ss_pred CCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 371 GVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 371 ~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
++||+|++.. +..+...+|.++.++|||||++++..
T Consensus 146 ~~fD~I~~d~----~~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 146 GSYDFGFVDA----DKPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp TCEEEEEECS----CGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCcCEEEECC----chHHHHHHHHHHHHhcCCCeEEEEec
Confidence 8999999753 23455689999999999999999975
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.54 E-value=5.5e-07 Score=93.86 Aligned_cols=138 Identities=9% Similarity=0.056 Sum_probs=85.5
Q ss_pred CCCeEEEECCccchhHHHhhc---------CCeEEEEcCCcccHHHHHHHHHH----cCCCcEEecCCCCCCCCCCCCcc
Q 044932 308 NIRVVLEIGSADLSFVASLLA---------KEVLTLTVGLKDDLVDLAQVALE----RGFPAVVSPLGNRRLPFPSGVFD 374 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~---------~~V~gmDIsp~D~seamlq~A~e----RGL~~i~~~~dt~~LPFpD~SFD 374 (689)
...+|||+|||+|.|+..++. ..++|+|+++. +++.|.. .|+...+...|+.. ++++..||
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~-----~~~~a~~n~~~~g~~~~i~~~D~l~-~~~~~~fD 203 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDL-----LISLALVGADLQRQKMTLLHQDGLA-NLLVDPVD 203 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHH-----HHHHHHHHHHHHTCCCEEEESCTTS-CCCCCCEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHH-----HHHHHHHHHHhCCCCceEEECCCCC-ccccCCcc
Confidence 346899999999998766542 35899999874 3444433 46655555555543 34568999
Q ss_pred eEEecccccccccc----------------H-HHHHHHHHhccCCCcEEEEEcCCCchh--HHHHHHHHHHhcceeE--E
Q 044932 375 AIHCDGCSITWHAH----------------G-GKLLLEMNRILRPSGYFILSTKHDSIE--EEEALTTLTASICWNI--L 433 (689)
Q Consensus 375 lVhcs~cli~W~~d----------------~-~~aL~EI~RVLRPGG~fVIsdp~~~le--~~~~ie~La~~l~W~~--v 433 (689)
+|++.--.-.|..+ . ..++..+.+.|+|||++++..|...+. ....+.+.+...+|.. +
T Consensus 204 ~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~~~~ii 283 (344)
T 2f8l_A 204 VVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGII 283 (344)
T ss_dssp EEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEE
T ss_pred EEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCeEEEee
Confidence 99986321111110 1 157899999999999999998765432 2345666666666643 2
Q ss_pred EeeccccC----ceeEEEEEeC
Q 044932 434 AHKTDEIS----EMGVKIYQKP 451 (689)
Q Consensus 434 ~~~~~~~g----~~~i~IwqKp 451 (689)
.-..+.+. ...|.+++|.
T Consensus 284 ~lp~~~F~~~~~~~~i~vl~k~ 305 (344)
T 2f8l_A 284 KLPETLFKSEQARKSILILEKA 305 (344)
T ss_dssp ECCGGGSCC-CCCEEEEEEEEC
T ss_pred eCChhhccCCCCceEEEEEECC
Confidence 22222222 2346666664
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=6.8e-08 Score=106.48 Aligned_cols=121 Identities=22% Similarity=0.234 Sum_probs=78.5
Q ss_pred CCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHH----HcCCCcEEecCCCCCCC-CCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVAL----ERGFPAVVSPLGNRRLP-FPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~----eRGL~~i~~~~dt~~LP-FpD~SFDlVh 377 (689)
...+|||+|||+|..+..|+. ..|+++|+++. +++.+. ..|+...+...|...++ +.+++||+|+
T Consensus 101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~-----~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il 175 (464)
T 3m6w_A 101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGK-----RVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVL 175 (464)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHH-----HHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHH-----HHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEE
Confidence 357899999999998877763 24899998864 444433 34776445555655555 3468999999
Q ss_pred e----cccc-c--------ccccc--------HHHHHHHHHhccCCCcEEEEEcCCCch-hHHHHHHHHHHhc-ceeEE
Q 044932 378 C----DGCS-I--------TWHAH--------GGKLLLEMNRILRPSGYFILSTKHDSI-EEEEALTTLTASI-CWNIL 433 (689)
Q Consensus 378 c----s~cl-i--------~W~~d--------~~~aL~EI~RVLRPGG~fVIsdp~~~l-e~~~~ie~La~~l-~W~~v 433 (689)
+ +... + .|..+ ...+|.++.++|||||+|++++-.-.. +....+..+++.. .|+++
T Consensus 176 ~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l~~~~~~~l~ 254 (464)
T 3m6w_A 176 LDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKAHPEFRLE 254 (464)
T ss_dssp EECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTEEEE
T ss_pred ECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHHHHCCCcEEE
Confidence 4 2111 1 11111 156899999999999999998644222 2334566677665 46554
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.51 E-value=3e-07 Score=99.07 Aligned_cols=99 Identities=21% Similarity=0.138 Sum_probs=65.8
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHH----HcCCCcEEecCCCCC-CCCCCCCcceEEeccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVAL----ERGFPAVVSPLGNRR-LPFPSGVFDAIHCDGC 381 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~----eRGL~~i~~~~dt~~-LPFpD~SFDlVhcs~c 381 (689)
..+|||+|||+|.++..++.. .|+++|+++. +++.|. ..|+...+...|... ++...+.||+|++..-
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~-----al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP 289 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKGAYALAVDKDLE-----ALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPP 289 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTCEEEEEESCHH-----HHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCC
T ss_pred CCeEEEcccchhHHHHHHHHcCCeEEEEECCHH-----HHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCC
Confidence 578999999999999888754 4899999874 444443 346665444555433 2222344999997421
Q ss_pred ccc--------ccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 382 SIT--------WHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 382 li~--------W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
.+. ...+...++.++.|+|+|||+|++.+-.
T Consensus 290 ~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 290 TLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 100 1123357888999999999999976544
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=6e-07 Score=93.91 Aligned_cols=93 Identities=10% Similarity=-0.010 Sum_probs=63.9
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCC--cEEecCCCCCCCCCCCCcceEEecccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFP--AVVSPLGNRRLPFPSGVFDAIHCDGCSIT 384 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~--~i~~~~dt~~LPFpD~SFDlVhcs~cli~ 384 (689)
..+|||+|||+|.|+.. +.. .|+++|+++... ..+.+.+...++. ..+...|...++ ++||+|++..-.
T Consensus 196 ~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai-~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~-- 268 (336)
T 2yx1_A 196 NDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAI-ELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPK-- 268 (336)
T ss_dssp TCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTT--
T ss_pred CCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcH--
Confidence 57899999999999988 753 489999987422 1222233334652 344555555443 799999975211
Q ss_pred ccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 385 WHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 385 W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
....++.++.++|+|||++++.+.
T Consensus 269 ---~~~~~l~~~~~~L~~gG~l~~~~~ 292 (336)
T 2yx1_A 269 ---FAHKFIDKALDIVEEGGVIHYYTI 292 (336)
T ss_dssp ---TGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred ---hHHHHHHHHHHHcCCCCEEEEEEe
Confidence 123789999999999999988753
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.4e-07 Score=96.52 Aligned_cols=92 Identities=22% Similarity=0.217 Sum_probs=61.2
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc----CC--CcEEecCCCCCCCCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER----GF--PAVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR----GL--~~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
...+|||+|||+|.++..|+.. .|+++|+++ .|++.|.++ ++ ...+...|...++++ +||+|++.
T Consensus 28 ~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~-----~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~--~fD~vv~n 100 (285)
T 1zq9_A 28 PTDVVLEVGPGTGNMTVKLLEKAKKVVACELDP-----RLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--FFDTCVAN 100 (285)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHSSEEEEEESCH-----HHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--CCSEEEEE
T ss_pred CCCEEEEEcCcccHHHHHHHhhCCEEEEEECCH-----HHHHHHHHHHHhcCCCCceEEEEcceecccch--hhcEEEEe
Confidence 3578999999999999888753 599999886 466666554 22 234455666777776 79999985
Q ss_pred cccccccccHH-HHH--------------HHH--HhccCCCcEEE
Q 044932 380 GCSITWHAHGG-KLL--------------LEM--NRILRPSGYFI 407 (689)
Q Consensus 380 ~cli~W~~d~~-~aL--------------~EI--~RVLRPGG~fV 407 (689)
. -++|..... .+| .|+ +|+|+|||.++
T Consensus 101 l-py~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 101 L-PYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp C-CGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred c-CcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 3 223322111 111 355 47999999874
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.3e-07 Score=96.42 Aligned_cols=97 Identities=20% Similarity=0.235 Sum_probs=65.4
Q ss_pred CCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHc-----CC----------CcEEecCCCCC-CCC
Q 044932 308 NIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALER-----GF----------PAVVSPLGNRR-LPF 368 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eR-----GL----------~~i~~~~dt~~-LPF 368 (689)
...+|||||||+|.++..++.. .|+++|+++ .+++.|+++ ++ ...+...|+.. ++.
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~-----~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~ 149 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDE-----DVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN 149 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCH-----HHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCH-----HHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc
Confidence 3579999999999999888765 489999886 456666554 21 12233344322 223
Q ss_pred CCCCcceEEeccccccccc--c--HHHHHHHHHhccCCCcEEEEEcC
Q 044932 369 PSGVFDAIHCDGCSITWHA--H--GGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 369 pD~SFDlVhcs~cli~W~~--d--~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
+++||+|++.... ++.. . ...++.++.|+|+|||+|++...
T Consensus 150 -~~~fD~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 194 (281)
T 1mjf_A 150 -NRGFDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG 194 (281)
T ss_dssp -CCCEEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -cCCeeEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 5799999975321 2211 1 25789999999999999999753
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=8.8e-07 Score=91.93 Aligned_cols=117 Identities=8% Similarity=0.015 Sum_probs=80.8
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHH----cCCCcEEecCCCCCCCCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALE----RGFPAVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~e----RGL~~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
...+|||||||+|-|+..++.. .|+++||++. |++++.+ .|+...+.+.|...-+ +...||+|++.
T Consensus 132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~-----~le~a~~~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~l 205 (281)
T 3lcv_B 132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDAR-----LVGFVDEALTRLNVPHRTNVADLLEDR-LDEPADVTLLL 205 (281)
T ss_dssp CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHH-----HHHHHHHHHHHTTCCEEEEECCTTTSC-CCSCCSEEEET
T ss_pred CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHH-----HHHHHHHHHHhcCCCceEEEeeecccC-CCCCcchHHHH
Confidence 4679999999999998777543 5999999864 5555444 3787777776654434 45899999876
Q ss_pred ccccccccc--HHHHHHHHHhccCCCcEEEEEcCC-------Cchh-HHHHHHHHHHhcceeE
Q 044932 380 GCSITWHAH--GGKLLLEMNRILRPSGYFILSTKH-------DSIE-EEEALTTLTASICWNI 432 (689)
Q Consensus 380 ~cli~W~~d--~~~aL~EI~RVLRPGG~fVIsdp~-------~~le-~~~~ie~La~~l~W~~ 432 (689)
- .+|..++ .+..+ ++...|+|+|.||-.+.. .+.. ....++..+..-+|..
T Consensus 206 k-ti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~ 266 (281)
T 3lcv_B 206 K-TLPCLETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRI 266 (281)
T ss_dssp T-CHHHHHHHSTTHHH-HHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCCE
T ss_pred H-HHHHhhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCce
Confidence 4 3443322 23445 999999999999988762 1221 2245778888788843
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.44 E-value=3.4e-07 Score=101.00 Aligned_cols=115 Identities=21% Similarity=0.256 Sum_probs=73.9
Q ss_pred CCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHH----cCCCc-EEecCCCCCCCC-CCCCcceEE
Q 044932 309 IRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALE----RGFPA-VVSPLGNRRLPF-PSGVFDAIH 377 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~e----RGL~~-i~~~~dt~~LPF-pD~SFDlVh 377 (689)
..+|||+|||+|..+..|+. ..|+++|+++. +++.+.+ .|+.. .+...|...++. .+++||+|+
T Consensus 118 g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~-----~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il 192 (479)
T 2frx_A 118 PQRVMDVAAAPGSKTTQISARMNNEGAILANEFSAS-----RVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAIL 192 (479)
T ss_dssp CSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHH-----HHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHH-----HHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEE
Confidence 46899999999998877764 24899998864 4444433 36643 345566666653 458999999
Q ss_pred e----ccc-cc--------ccccc--------HHHHHHHHHhccCCCcEEEEEcCCCch-hHHHHHHHHHHhc
Q 044932 378 C----DGC-SI--------TWHAH--------GGKLLLEMNRILRPSGYFILSTKHDSI-EEEEALTTLTASI 428 (689)
Q Consensus 378 c----s~c-li--------~W~~d--------~~~aL~EI~RVLRPGG~fVIsdp~~~l-e~~~~ie~La~~l 428 (689)
| +.. .+ +|... ...+|.++.|+|||||+|++++-.-.. +....+..+++..
T Consensus 193 ~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l~~~ 265 (479)
T 2frx_A 193 LDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETY 265 (479)
T ss_dssp EECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHHHHHS
T ss_pred ECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHHHHHC
Confidence 6 211 11 12111 136789999999999999998743222 2223455555554
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-06 Score=90.93 Aligned_cols=145 Identities=9% Similarity=0.062 Sum_probs=91.8
Q ss_pred eecCCCCcccchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhc---CCeEEEEcCCcccHHHHHHHHHHc
Q 044932 276 LTFPQNQSEFKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA---KEVLTLTVGLKDDLVDLAQVALER 352 (689)
Q Consensus 276 ~~Fpgggt~F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~---~~V~gmDIsp~D~seamlq~A~eR 352 (689)
+.|.-..++|..+...-...|.+++. .+.+|||+|||+|.|+..++. ..|+++|++|... +.+.+-+...
T Consensus 99 ~~~D~~k~~f~~~~~~er~ri~~~~~------~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~-~~~~~N~~~N 171 (278)
T 3k6r_A 99 YKLDVAKIMFSPANVKERVRMAKVAK------PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTF-KFLVENIHLN 171 (278)
T ss_dssp EEEETTTSCCCGGGHHHHHHHHHHCC------TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHH-HHHHHHHHHT
T ss_pred EEEeccceEEcCCcHHHHHHHHHhcC------CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHH-HHHHHHHHHc
Confidence 34444456777776644455555542 357999999999999876653 3599999988422 2233334445
Q ss_pred CCCc--EEecCCCCCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcC--CCch--hHHHHHHHHHH
Q 044932 353 GFPA--VVSPLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK--HDSI--EEEEALTTLTA 426 (689)
Q Consensus 353 GL~~--i~~~~dt~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp--~~~l--e~~~~ie~La~ 426 (689)
|+.. .+...|+..++. .+.||.|++.. .+ ....+|....++|||||++.+-.. .... ...+.++.++.
T Consensus 172 ~v~~~v~~~~~D~~~~~~-~~~~D~Vi~~~--p~---~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~ 245 (278)
T 3k6r_A 172 KVEDRMSAYNMDNRDFPG-ENIADRILMGY--VV---RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITK 245 (278)
T ss_dssp TCTTTEEEECSCTTTCCC-CSCEEEEEECC--CS---SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHH
T ss_pred CCCCcEEEEeCcHHHhcc-ccCCCEEEECC--CC---cHHHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHH
Confidence 6654 344566666654 47899998642 11 233678888899999999876432 1111 12345778888
Q ss_pred hcceeEE
Q 044932 427 SICWNIL 433 (689)
Q Consensus 427 ~l~W~~v 433 (689)
..++...
T Consensus 246 ~~g~~v~ 252 (278)
T 3k6r_A 246 EYGYDVE 252 (278)
T ss_dssp HTTCEEE
T ss_pred HcCCcEE
Confidence 8888763
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=5.2e-07 Score=93.85 Aligned_cols=110 Identities=13% Similarity=0.025 Sum_probs=71.4
Q ss_pred CCCeEEEECC------ccch-hHHHhhc--CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEe
Q 044932 308 NIRVVLEIGS------ADLS-FVASLLA--KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGC------GtGs-faa~La~--~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhc 378 (689)
...+|||+|| |+|+ .++.+.. ..|+++|+++. + .++... ...|...++++ ++||+|+|
T Consensus 63 ~g~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~------v-----~~v~~~-i~gD~~~~~~~-~~fD~Vvs 129 (290)
T 2xyq_A 63 YNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF------V-----SDADST-LIGDCATVHTA-NKWDLIIS 129 (290)
T ss_dssp TTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC------B-----CSSSEE-EESCGGGCCCS-SCEEEEEE
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC------C-----CCCEEE-EECccccCCcc-CcccEEEE
Confidence 3578999999 4565 2333433 35999999984 1 234330 44566677776 78999998
Q ss_pred cccccccc-----------ccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEE
Q 044932 379 DGCSITWH-----------AHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 379 s~cli~W~-----------~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v 433 (689)
... .++. .....+|.++.|+|||||.|++........ ..+..+++..+|..+
T Consensus 130 n~~-~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~--~~l~~~l~~~GF~~v 192 (290)
T 2xyq_A 130 DMY-DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWN--ADLYKLMGHFSWWTA 192 (290)
T ss_dssp CCC-CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCC--HHHHHHHTTEEEEEE
T ss_pred cCC-ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCH--HHHHHHHHHcCCcEE
Confidence 521 1110 012478999999999999999976432211 246677888877654
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.8e-07 Score=105.99 Aligned_cols=115 Identities=16% Similarity=0.079 Sum_probs=75.6
Q ss_pred CCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHH----cCCC---cEEecCCCCC-CCCCCCCcceEE
Q 044932 309 IRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALE----RGFP---AVVSPLGNRR-LPFPSGVFDAIH 377 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~e----RGL~---~i~~~~dt~~-LPFpD~SFDlVh 377 (689)
..+|||+|||+|.|+.+++.. .|+++|+++. +++.|.+ .|+. ..+...|... ++...++||+|+
T Consensus 540 g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~-----al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii 614 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRT-----YLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIF 614 (703)
T ss_dssp TCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHH-----HHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHH-----HHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEE
Confidence 468999999999999877643 3999999874 4444443 4664 3444555433 444568999999
Q ss_pred eccc----------cccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhccee
Q 044932 378 CDGC----------SITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWN 431 (689)
Q Consensus 378 cs~c----------li~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~ 431 (689)
+.-- ......+...++.++.++|+|||+|+++........ -.+.+...+++
T Consensus 615 ~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~---~~~~l~~~g~~ 675 (703)
T 3v97_A 615 IDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRM---DLDGLAKLGLK 675 (703)
T ss_dssp ECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCC---CHHHHHHTTEE
T ss_pred ECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccccc---CHHHHHHcCCc
Confidence 8421 112123445788999999999999999886632211 12345556665
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.42 E-value=4.5e-07 Score=96.56 Aligned_cols=121 Identities=13% Similarity=0.012 Sum_probs=75.4
Q ss_pred CCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCC-C--cEEecCCCCCC-C-C--CCCCcceEEe
Q 044932 309 IRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGF-P--AVVSPLGNRRL-P-F--PSGVFDAIHC 378 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL-~--~i~~~~dt~~L-P-F--pD~SFDlVhc 378 (689)
..+|||+|||+|.|+..++.. .|+++|+++... ..+.+.+...|+ . ..+...|...+ + + ...+||+|++
T Consensus 221 ~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al-~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~ 299 (396)
T 3c0k_A 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEAL-DIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_dssp TCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEE
Confidence 468999999999999888754 489999987422 122222333466 3 34444554332 1 1 1468999998
Q ss_pred ccc--------cccccccHHHHHHHHHhccCCCcEEEEEcCCCchh--H-HHHHHHHHHhcce
Q 044932 379 DGC--------SITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIE--E-EEALTTLTASICW 430 (689)
Q Consensus 379 s~c--------li~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le--~-~~~ie~La~~l~W 430 (689)
.-- ..........++.++.++|+|||+++++..+.... . ...+...+...++
T Consensus 300 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~ 362 (396)
T 3c0k_A 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGR 362 (396)
T ss_dssp CCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCC
Confidence 421 11111344578999999999999999987654332 1 2334445555553
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.41 E-value=1.5e-07 Score=100.10 Aligned_cols=104 Identities=11% Similarity=-0.035 Sum_probs=68.0
Q ss_pred CCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCCC--cEEecCCCCCC-CC---CCCCcceEEec
Q 044932 309 IRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGFP--AVVSPLGNRRL-PF---PSGVFDAIHCD 379 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL~--~i~~~~dt~~L-PF---pD~SFDlVhcs 379 (689)
..+|||+|||+|.++..++.. .|+++|+++... ..+.+.+...|+. ..+...+...+ +. .+.+||+|++.
T Consensus 218 ~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l-~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~d 296 (396)
T 2as0_A 218 GDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAI-ETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 296 (396)
T ss_dssp TCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEEC
Confidence 478999999999999888754 599999987422 1222223334663 33444554332 21 25799999984
Q ss_pred ccc--------ccccccHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 380 GCS--------ITWHAHGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 380 ~cl--------i~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
.-. ..+..+...++.++.++|+|||+++++....
T Consensus 297 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 297 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 211 1111334578899999999999999887553
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.4e-07 Score=100.23 Aligned_cols=120 Identities=14% Similarity=0.057 Sum_probs=73.5
Q ss_pred CCeEEEECCccchhHHHhhc--CCeEEEEcCCcccHHHHHHHHHHcCCC-cEEecCCCCCC-CC---CCCCcceEEeccc
Q 044932 309 IRVVLEIGSADLSFVASLLA--KEVLTLTVGLKDDLVDLAQVALERGFP-AVVSPLGNRRL-PF---PSGVFDAIHCDGC 381 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~--~~V~gmDIsp~D~seamlq~A~eRGL~-~i~~~~dt~~L-PF---pD~SFDlVhcs~c 381 (689)
..+|||+|||+|.++..++. ..|+++|+++... ..+.+.+...|+. ..+...+...+ +. .+.+||+|++.--
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~-~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP 288 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALGFREVVAVDSSAEAL-RRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP 288 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHH-HHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHH-HHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECCC
Confidence 36899999999999887775 3689999987422 1222223334665 33444454332 11 2579999998421
Q ss_pred c--------ccccccHHHHHHHHHhccCCCcEEEEEcCCCchhH---HHHHHHHHHhcc
Q 044932 382 S--------ITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEE---EEALTTLTASIC 429 (689)
Q Consensus 382 l--------i~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~---~~~ie~La~~l~ 429 (689)
. ..+......++.++.++|+|||+|+++........ ...+.+.+...+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g 347 (382)
T 1wxx_A 289 AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAH 347 (382)
T ss_dssp CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 1 11112345788999999999999999976543322 233444444444
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.9e-06 Score=88.39 Aligned_cols=132 Identities=10% Similarity=-0.054 Sum_probs=84.5
Q ss_pred CCCeEEEECCccchhHHHhhc-CCeEEEEcCCcccHHHHHHHHHH----cCCCcEEecCCCCCCCCCCCCcceEEecccc
Q 044932 308 NIRVVLEIGSADLSFVASLLA-KEVLTLTVGLKDDLVDLAQVALE----RGFPAVVSPLGNRRLPFPSGVFDAIHCDGCS 382 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-~~V~gmDIsp~D~seamlq~A~e----RGL~~i~~~~dt~~LPFpD~SFDlVhcs~cl 382 (689)
...+|||||||+|-|+..+.. ..++++||++. |++++.+ .|.+..+.+.|....|++ .+||+|+..-.
T Consensus 105 ~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~-----~i~~ar~~~~~~g~~~~~~v~D~~~~~~~-~~~DvvLllk~- 177 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYERGIASVWGCDIHQG-----LGDVITPFAREKDWDFTFALQDVLCAPPA-EAGDLALIFKL- 177 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHTTCSEEEEEESBHH-----HHHHHHHHHHHTTCEEEEEECCTTTSCCC-CBCSEEEEESC-
T ss_pred CCCeEEEecCCccHHHHHhccCCeEEEEeCCHH-----HHHHHHHHHHhcCCCceEEEeecccCCCC-CCcchHHHHHH-
Confidence 578999999999999987663 46999999874 4444443 376666777777777777 59999987532
Q ss_pred cccc--ccHHHHHHHHHhccCCCcEEEEEcCCC-------chh-HHHHHHHHHHhcceeEEEeeccccCceeEEEEEe
Q 044932 383 ITWH--AHGGKLLLEMNRILRPSGYFILSTKHD-------SIE-EEEALTTLTASICWNILAHKTDEISEMGVKIYQK 450 (689)
Q Consensus 383 i~W~--~d~~~aL~EI~RVLRPGG~fVIsdp~~-------~le-~~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqK 450 (689)
+|.. ...+..+ .+...|+|+|.||-..... +.. ....++..+..-.|.+-. .+++.+-+.+-+|
T Consensus 178 lh~LE~q~~~~~~-~ll~aL~~~~vvVsfPtksl~Gr~~gm~~~Y~~~~e~~~~~~~~~~~~---~~~~nEl~~~i~~ 251 (253)
T 3frh_A 178 LPLLEREQAGSAM-ALLQSLNTPRMAVSFPTRSLGGRGKGMEANYAAWFEGGLPAEFEIEDK---KTIGTELIYLIKK 251 (253)
T ss_dssp HHHHHHHSTTHHH-HHHHHCBCSEEEEEEECC-----------CHHHHHHHHSCTTEEEEEE---EEETTEEEEEEEE
T ss_pred HHHhhhhchhhHH-HHHHHhcCCCEEEEcChHHhcCCCcchhhHHHHHHHHHhhccchhhhh---eecCceEEEEEec
Confidence 3322 2334444 8888999998887776321 111 123466777766665432 2344444444444
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.37 E-value=3.2e-07 Score=100.92 Aligned_cols=125 Identities=24% Similarity=0.245 Sum_probs=78.4
Q ss_pred CCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHcCCCcE-EecCCCCCCC-CCCCCcceEEecc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALERGFPAV-VSPLGNRRLP-FPSGVFDAIHCDG 380 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eRGL~~i-~~~~dt~~LP-FpD~SFDlVhcs~ 380 (689)
...+|||+|||+|..+..|+.. .|+++|+++... ....+.+...|+..+ +...|...++ +.+++||+|++.-
T Consensus 105 ~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl-~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~Da 183 (456)
T 3m4x_A 105 PGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRA-KILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDA 183 (456)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHH-HHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEEC
T ss_pred CCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEECC
Confidence 3578999999999987776632 489999987422 122222333476543 3445555544 3358999998621
Q ss_pred -c---c-c--------cccccH--------HHHHHHHHhccCCCcEEEEEcCCCch-hHHHHHHHHHHhcceeEE
Q 044932 381 -C---S-I--------TWHAHG--------GKLLLEMNRILRPSGYFILSTKHDSI-EEEEALTTLTASICWNIL 433 (689)
Q Consensus 381 -c---l-i--------~W~~d~--------~~aL~EI~RVLRPGG~fVIsdp~~~l-e~~~~ie~La~~l~W~~v 433 (689)
| . + .|..+. ..+|.++.++|||||+|++++-.-.. +....+..+++...|+++
T Consensus 184 PCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~~~~~l~ 258 (456)
T 3m4x_A 184 PCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYPVTIE 258 (456)
T ss_dssp CCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEEE
T ss_pred CCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHhCCCEEE
Confidence 1 1 1 111111 26789999999999999998743222 334557788888776554
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=2.1e-06 Score=90.58 Aligned_cols=114 Identities=17% Similarity=0.084 Sum_probs=73.6
Q ss_pred CCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecc--c
Q 044932 309 IRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDG--C 381 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~--c 381 (689)
..+|||+|||+|.|+..++. ..|+|+|+++... +.| . ...+...|....+ +++.||+|++.- .
T Consensus 40 ~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~-----~~a--~--~~~~~~~D~~~~~-~~~~fD~Ii~NPPy~ 109 (421)
T 2ih2_A 40 GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKAL-----DLP--P--WAEGILADFLLWE-PGEAFDLILGNPPYG 109 (421)
T ss_dssp TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTC-----CCC--T--TEEEEESCGGGCC-CSSCEEEEEECCCCC
T ss_pred CCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHH-----HhC--C--CCcEEeCChhhcC-ccCCCCEEEECcCcc
Confidence 45899999999999887764 3599999998533 223 1 2334444544443 347999999841 1
Q ss_pred cccc-------c-cc------------------HHHHHHHHHhccCCCcEEEEEcCCCchh--HHHHHHHHHHhcceeE
Q 044932 382 SITW-------H-AH------------------GGKLLLEMNRILRPSGYFILSTKHDSIE--EEEALTTLTASICWNI 432 (689)
Q Consensus 382 li~W-------~-~d------------------~~~aL~EI~RVLRPGG~fVIsdp~~~le--~~~~ie~La~~l~W~~ 432 (689)
.... . .+ ...+|..+.++|+|||++++..+...+. ....+.+.+...++..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~~~~ 188 (421)
T 2ih2_A 110 IVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGKTS 188 (421)
T ss_dssp CBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSEEE
T ss_pred CcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhcCCeE
Confidence 0000 0 00 1156888999999999999998875431 2245677766667733
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=7.2e-06 Score=88.72 Aligned_cols=128 Identities=13% Similarity=0.123 Sum_probs=79.1
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHH----HcCCC-cEEecCC
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVAL----ERGFP-AVVSPLG 362 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~----eRGL~-~i~~~~d 362 (689)
...++.+.+.+. +. ...+|||+|||+|.++..|+.. .|+++|+++. +++.|. ..++. ..+...+
T Consensus 272 e~l~~~~~~~l~-~~---~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~-----al~~A~~n~~~~~~~~v~f~~~d 342 (433)
T 1uwv_A 272 QKMVARALEWLD-VQ---PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA-----LVEKGQQNARLNGLQNVTFYHEN 342 (433)
T ss_dssp HHHHHHHHHHHT-CC---TTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHH-----HHHHHHHHHHHTTCCSEEEEECC
T ss_pred HHHHHHHHHhhc-CC---CCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHH-----HHHHHHHHHHHcCCCceEEEECC
Confidence 344455555443 11 3468999999999999998865 5999999874 444443 34654 3344455
Q ss_pred CCC----CCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEE
Q 044932 363 NRR----LPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 363 t~~----LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~ 434 (689)
... +|+++++||+|++.- +...- ..++..+. -++|++.++++..+..+.. .+.. +...+|....
T Consensus 343 ~~~~l~~~~~~~~~fD~Vv~dP---Pr~g~-~~~~~~l~-~~~p~~ivyvsc~p~tlar--d~~~-l~~~Gy~~~~ 410 (433)
T 1uwv_A 343 LEEDVTKQPWAKNGFDKVLLDP---ARAGA-AGVMQQII-KLEPIRIVYVSCNPATLAR--DSEA-LLKAGYTIAR 410 (433)
T ss_dssp TTSCCSSSGGGTTCCSEEEECC---CTTCC-HHHHHHHH-HHCCSEEEEEESCHHHHHH--HHHH-HHHTTCEEEE
T ss_pred HHHHhhhhhhhcCCCCEEEECC---CCccH-HHHHHHHH-hcCCCeEEEEECChHHHHh--hHHH-HHHCCcEEEE
Confidence 443 567788999999742 11111 13444444 3799999999987654432 1333 3344776643
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.30 E-value=5.7e-06 Score=89.62 Aligned_cols=137 Identities=12% Similarity=0.066 Sum_probs=84.0
Q ss_pred CCeEEEECCccchhHHHhh-----------------cCCeEEEEcCCcccHHHHHHHHHH----cCC---CcEEecCCCC
Q 044932 309 IRVVLEIGSADLSFVASLL-----------------AKEVLTLTVGLKDDLVDLAQVALE----RGF---PAVVSPLGNR 364 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La-----------------~~~V~gmDIsp~D~seamlq~A~e----RGL---~~i~~~~dt~ 364 (689)
..+|||.|||+|.|...++ ...++|+|+++. ++..|+. +|+ ...+...|+.
T Consensus 172 ~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~-----~~~lA~~nl~l~g~~~~~~~i~~gD~l 246 (445)
T 2okc_A 172 GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPL-----VVTLASMNLYLHGIGTDRSPIVCEDSL 246 (445)
T ss_dssp TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHH-----HHHHHHHHHHHTTCCSSCCSEEECCTT
T ss_pred CCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHH-----HHHHHHHHHHHhCCCcCCCCEeeCCCC
Confidence 4689999999999876544 246999999874 3444332 465 3345556665
Q ss_pred CCCCCCCCcceEEecc--cccccccc--------------HHHHHHHHHhccCCCcEEEEEcCCCchh---HHHHHHH-H
Q 044932 365 RLPFPSGVFDAIHCDG--CSITWHAH--------------GGKLLLEMNRILRPSGYFILSTKHDSIE---EEEALTT-L 424 (689)
Q Consensus 365 ~LPFpD~SFDlVhcs~--cli~W~~d--------------~~~aL~EI~RVLRPGG~fVIsdp~~~le---~~~~ie~-L 424 (689)
..+.. ..||+|++.- ....+... ...+|..+.++|+|||++++..|...+. ....+.+ +
T Consensus 247 ~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~~L~~~~~~~~iR~~L 325 (445)
T 2okc_A 247 EKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRL 325 (445)
T ss_dssp TSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHH
T ss_pred CCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCcccccCcHHHHHHHHH
Confidence 55554 4899999852 11111110 1368999999999999999998765432 2234554 5
Q ss_pred HHhcceeEEEee-cccc----CceeEEEEEeC
Q 044932 425 TASICWNILAHK-TDEI----SEMGVKIYQKP 451 (689)
Q Consensus 425 a~~l~W~~v~~~-~~~~----g~~~i~IwqKp 451 (689)
++...+..+..- ...+ -...|++++|.
T Consensus 326 ~~~~~l~~ii~lp~~~F~~t~v~t~Il~~~k~ 357 (445)
T 2okc_A 326 LQDFNLHTILRLPTGIFYAQGVKANVLFFSKG 357 (445)
T ss_dssp HHHEEEEEEEECCSSSSSSTTCCEEEEEEEES
T ss_pred HhcCcEEEEEeCCCCCccCCCCCEEEEEEECC
Confidence 666556554322 1112 12346666664
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=4e-06 Score=87.04 Aligned_cols=127 Identities=14% Similarity=0.070 Sum_probs=72.9
Q ss_pred ccchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCcEEe
Q 044932 284 EFKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPAVVS 359 (689)
Q Consensus 284 ~F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~i~~ 359 (689)
.|..++..-+..|.+. ..+. ...+|||+|||+|+|+.+.+.. .|.++++.- |.....+.. ...|...+..
T Consensus 54 ~YrSRaA~KL~ei~ek-~~l~---~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGv-Dl~~~pi~~-~~~g~~ii~~ 127 (277)
T 3evf_A 54 VAVSRGTAKLRWFHER-GYVK---LEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGR-DGHEKPMNV-QSLGWNIITF 127 (277)
T ss_dssp BCSSTHHHHHHHHHHT-TSSC---CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC-TTCCCCCCC-CBTTGGGEEE
T ss_pred CccccHHHHHHHHHHh-CCCC---CCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEec-cCccccccc-CcCCCCeEEE
Confidence 3445554334444443 2233 3468999999999999876654 366777762 211000000 0012222333
Q ss_pred cCCCCCCCCCCCCcceEEecc---ccccccccHH--HHHHHHHhccCCC-cEEEEEcCCCchh
Q 044932 360 PLGNRRLPFPSGVFDAIHCDG---CSITWHAHGG--KLLLEMNRILRPS-GYFILSTKHDSIE 416 (689)
Q Consensus 360 ~~dt~~LPFpD~SFDlVhcs~---cli~W~~d~~--~aL~EI~RVLRPG-G~fVIsdp~~~le 416 (689)
..++.-..|+...||+|+|.. .-++|.+... .+|..+.++|+|| |.|++..-.++-.
T Consensus 128 ~~~~dv~~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~ 190 (277)
T 3evf_A 128 KDKTDIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMP 190 (277)
T ss_dssp ECSCCTTTSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSH
T ss_pred eccceehhcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCc
Confidence 333344567788999999854 2233443322 3468889999999 9999987664333
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=3.1e-06 Score=91.94 Aligned_cols=99 Identities=13% Similarity=0.045 Sum_probs=63.9
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecccccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWH 386 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~ 386 (689)
..+|||+|||+|.|+..|+.. .|+++|+++... ..+.+.+...|+...+...+...++ + .+||+|++..-. .
T Consensus 291 ~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai-~~A~~n~~~ngl~v~~~~~d~~~~~-~-~~fD~Vv~dPPr---~ 364 (425)
T 2jjq_A 291 GEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAI-EMARRNVEINNVDAEFEVASDREVS-V-KGFDTVIVDPPR---A 364 (425)
T ss_dssp SSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHH-HHHHHHHHHHTCCEEEEECCTTTCC-C-TTCSEEEECCCT---T
T ss_pred CCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHH-HHHHHHHHHcCCcEEEEECChHHcC-c-cCCCEEEEcCCc---c
Confidence 468999999999999988864 599999987422 1122223334665445556665553 2 289999974211 1
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEcCCCc
Q 044932 387 AHGGKLLLEMNRILRPSGYFILSTKHDS 414 (689)
Q Consensus 387 ~d~~~aL~EI~RVLRPGG~fVIsdp~~~ 414 (689)
.....++..+ +.|+|||+++++..+..
T Consensus 365 g~~~~~~~~l-~~l~p~givyvsc~p~t 391 (425)
T 2jjq_A 365 GLHPRLVKRL-NREKPGVIVYVSCNPET 391 (425)
T ss_dssp CSCHHHHHHH-HHHCCSEEEEEESCHHH
T ss_pred chHHHHHHHH-HhcCCCcEEEEECChHH
Confidence 1112344444 56999999999986643
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.20 E-value=4e-06 Score=86.44 Aligned_cols=65 Identities=23% Similarity=0.374 Sum_probs=44.5
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH----cCCC-cEEecCCCCCCCCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE----RGFP-AVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e----RGL~-~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
...+|||+|||+|.++..|+.. .|+++|+++. +++.|.+ .++. ..+...|...++++ +||+|+|.
T Consensus 42 ~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~-----~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~--~~D~Vv~n 113 (299)
T 2h1r_A 42 SSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSR-----MISEVKKRCLYEGYNNLEVYEGDAIKTVFP--KFDVCTAN 113 (299)
T ss_dssp TTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHH-----HHHHHHHHHHHTTCCCEEC----CCSSCCC--CCSEEEEE
T ss_pred CcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHH-----HHHHHHHHHHHcCCCceEEEECchhhCCcc--cCCEEEEc
Confidence 3578999999999999999875 5899998863 4555444 3443 23445566666665 89999985
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.16 E-value=2.6e-06 Score=91.57 Aligned_cols=102 Identities=13% Similarity=0.106 Sum_probs=63.1
Q ss_pred CCeEEEECCccchhHHHhh-------------------cCCeEEEEcCCcccHHHHHHHHH----------Hc----CCC
Q 044932 309 IRVVLEIGSADLSFVASLL-------------------AKEVLTLTVGLKDDLVDLAQVAL----------ER----GFP 355 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La-------------------~~~V~gmDIsp~D~seamlq~A~----------eR----GL~ 355 (689)
.-+|+|+|||+|..+..++ +..|..-|+...|...-...... .+ +..
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 4689999999998765542 11366678777665311111110 00 001
Q ss_pred cEEecCCC-CCCCCCCCCcceEEeccccccccc--------------------------------------cHHHHHHHH
Q 044932 356 AVVSPLGN-RRLPFPSGVFDAIHCDGCSITWHA--------------------------------------HGGKLLLEM 396 (689)
Q Consensus 356 ~i~~~~dt-~~LPFpD~SFDlVhcs~cli~W~~--------------------------------------d~~~aL~EI 396 (689)
...++.++ ..-.||++|||+||++.+ +||.. |...+|...
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~a-LHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFS-LHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESC-TTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecce-eeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222 122489999999998754 58975 233468889
Q ss_pred HhccCCCcEEEEEcC
Q 044932 397 NRILRPSGYFILSTK 411 (689)
Q Consensus 397 ~RVLRPGG~fVIsdp 411 (689)
.|.|+|||.++++..
T Consensus 212 a~eL~pGG~mvl~~~ 226 (374)
T 3b5i_A 212 AAEVKRGGAMFLVCL 226 (374)
T ss_dssp HHHEEEEEEEEEEEE
T ss_pred HHHhCCCCEEEEEEe
Confidence 999999999999853
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.14 E-value=1.2e-06 Score=87.58 Aligned_cols=76 Identities=16% Similarity=0.241 Sum_probs=51.1
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcC--C-CcEEecCCCCCC
Q 044932 292 YLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERG--F-PAVVSPLGNRRL 366 (689)
Q Consensus 292 Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRG--L-~~i~~~~dt~~L 366 (689)
+++.|.+.+. +. ...+|||+|||+|.++..|+.. .|+++|+++ .+++.|.++- . ...+...|...+
T Consensus 18 ~~~~i~~~~~-~~---~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~-----~~~~~a~~~~~~~~~v~~~~~D~~~~ 88 (244)
T 1qam_A 18 NIDKIMTNIR-LN---EHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDH-----KLCKTTENKLVDHDNFQVLNKDILQF 88 (244)
T ss_dssp HHHHHHTTCC-CC---TTCEEEEECCTTSHHHHHHHHHSSEEEEECSCH-----HHHHHHHHHTTTCCSEEEECCCGGGC
T ss_pred HHHHHHHhCC-CC---CCCEEEEEeCCchHHHHHHHHcCCeEEEEECCH-----HHHHHHHHhhccCCCeEEEEChHHhC
Confidence 3455555443 11 3578999999999999888764 589999875 5667776642 1 234556777888
Q ss_pred CCCC-CCcceE
Q 044932 367 PFPS-GVFDAI 376 (689)
Q Consensus 367 PFpD-~SFDlV 376 (689)
++++ ..|++|
T Consensus 89 ~~~~~~~~~vv 99 (244)
T 1qam_A 89 KFPKNQSYKIF 99 (244)
T ss_dssp CCCSSCCCEEE
T ss_pred CcccCCCeEEE
Confidence 8874 456433
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.04 E-value=2e-07 Score=92.52 Aligned_cols=97 Identities=14% Similarity=0.076 Sum_probs=61.0
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc--CC-CcEEecCCCCCCCCCC-CCcceEEeccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER--GF-PAVVSPLGNRRLPFPS-GVFDAIHCDGC 381 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR--GL-~~i~~~~dt~~LPFpD-~SFDlVhcs~c 381 (689)
...+|||+|||+|.++..|+.. .|+++|+++.. ++.|.++ +. ...+...|...+++++ ++| .|++..-
T Consensus 29 ~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~-----~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f-~vv~n~P 102 (245)
T 1yub_A 29 ETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHL-----FNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY-KIVGNIP 102 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSS-----SSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE-EEEEECC
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHH-----HHHHHHHhccCCceEEEECChhhcCcccCCCc-EEEEeCC
Confidence 3468999999999998888754 58999998853 3333332 11 2345566778888874 789 5555310
Q ss_pred -----------cccccccHHHHH----HHHHhccCCCcEEEEEcC
Q 044932 382 -----------SITWHAHGGKLL----LEMNRILRPSGYFILSTK 411 (689)
Q Consensus 382 -----------li~W~~d~~~aL----~EI~RVLRPGG~fVIsdp 411 (689)
..| ......+| ..+.|+|+|||.|++...
T Consensus 103 y~~~~~~~~~~~~~-~~~~~~~lm~q~e~a~rll~~~G~l~v~~~ 146 (245)
T 1yub_A 103 YHLSTQIIKKVVFE-SRASDIYLIVEEGFYKRTLDIHRTLGLLLH 146 (245)
T ss_dssp SSSCHHHHHHHHHH-CCCEEEEEEEESSHHHHHHCGGGSHHHHTT
T ss_pred ccccHHHHHHHHhC-CCCCeEEEEeeHHHHHHHhCCCCchhhhhe
Confidence 001 11222334 558899999987765443
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.86 E-value=9.2e-05 Score=78.28 Aligned_cols=94 Identities=11% Similarity=0.083 Sum_probs=58.1
Q ss_pred CeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCc-EEecCCCCCC-C-CCC--------------
Q 044932 310 RVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPA-VVSPLGNRRL-P-FPS-------------- 370 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~-i~~~~dt~~L-P-FpD-------------- 370 (689)
.+|||+|||+|.|+..|+.. .|+++|+++... ..+.+.+...|+.. .+...++..+ + +..
T Consensus 215 ~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai-~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~ 293 (369)
T 3bt7_A 215 GDLLELYCGNGNFSLALARNFDRVLATEIAKPSV-AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS 293 (369)
T ss_dssp SEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHH-HHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGG
T ss_pred CEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHH-HHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccccc
Confidence 57999999999999988864 599999987422 12222333446643 3444444332 1 221
Q ss_pred CCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 371 GVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 371 ~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
.+||+|++.- +. ..+..++.++|+|+|.+++..-
T Consensus 294 ~~fD~Vv~dP---Pr----~g~~~~~~~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 294 YQCETIFVDP---PR----SGLDSETEKMVQAYPRILYISC 327 (369)
T ss_dssp CCEEEEEECC---CT----TCCCHHHHHHHTTSSEEEEEES
T ss_pred CCCCEEEECc---Cc----cccHHHHHHHHhCCCEEEEEEC
Confidence 3899998641 10 0134567777888887777653
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=1.5e-05 Score=86.09 Aligned_cols=102 Identities=17% Similarity=0.143 Sum_probs=61.4
Q ss_pred CCeEEEECCccchhHHHhhcC---------------------CeEEEEcCCcccH------HHHHHHHH-HcC--CCcEE
Q 044932 309 IRVVLEIGSADLSFVASLLAK---------------------EVLTLTVGLKDDL------VDLAQVAL-ERG--FPAVV 358 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---------------------~V~gmDIsp~D~s------eamlq~A~-eRG--L~~i~ 358 (689)
.-+|+|+||++|..+..++.. .|..-|+...|.. +.+.+.+. +.| .+..+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 468999999999876544321 2455566555542 11222222 223 22222
Q ss_pred --ecCCC-CCCCCCCCCcceEEeccccccccccHHHH---------------------------------------HHHH
Q 044932 359 --SPLGN-RRLPFPSGVFDAIHCDGCSITWHAHGGKL---------------------------------------LLEM 396 (689)
Q Consensus 359 --~~~dt-~~LPFpD~SFDlVhcs~cli~W~~d~~~a---------------------------------------L~EI 396 (689)
++.++ ..-.||++|||+||++.+ +||..+.... |.-.
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~a-LHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R 211 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYC-LHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH 211 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESC-TTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecce-eeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 234599999999998754 5897543211 4445
Q ss_pred HhccCCCcEEEEEcC
Q 044932 397 NRILRPSGYFILSTK 411 (689)
Q Consensus 397 ~RVLRPGG~fVIsdp 411 (689)
.|.|+|||.+++...
T Consensus 212 a~eL~pGG~mvl~~~ 226 (384)
T 2efj_A 212 SEELISRGRMLLTFI 226 (384)
T ss_dssp HHHEEEEEEEEEEEE
T ss_pred HHHhccCCeEEEEEe
Confidence 899999999999853
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=97.84 E-value=8.5e-05 Score=79.84 Aligned_cols=101 Identities=9% Similarity=0.075 Sum_probs=66.8
Q ss_pred CCCeEEEECCccchhHHHhh--cC----------------------------------------CeEEEEcCCcccHHHH
Q 044932 308 NIRVVLEIGSADLSFVASLL--AK----------------------------------------EVLTLTVGLKDDLVDL 345 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La--~~----------------------------------------~V~gmDIsp~D~seam 345 (689)
....|||.+||+|.|+...+ .. .|+|+|+++. |
T Consensus 194 ~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~-----a 268 (384)
T 3ldg_A 194 PDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGR-----M 268 (384)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHH-----H
T ss_pred CCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHH-----H
Confidence 45789999999999864332 22 3999999874 4
Q ss_pred HHHHH----HcCCC--cEEecCCCCCCCCCCCCcceEEecc---ccccccccHHHHHHHHHhccCC--CcEEEEEcCCCc
Q 044932 346 AQVAL----ERGFP--AVVSPLGNRRLPFPSGVFDAIHCDG---CSITWHAHGGKLLLEMNRILRP--SGYFILSTKHDS 414 (689)
Q Consensus 346 lq~A~----eRGL~--~i~~~~dt~~LPFpD~SFDlVhcs~---cli~W~~d~~~aL~EI~RVLRP--GG~fVIsdp~~~ 414 (689)
++.|. ..|+. ..+...|...++.+ .+||+|+|.- -.+.-..+...++.++.++||+ ||.+++.++...
T Consensus 269 l~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~~ 347 (384)
T 3ldg_A 269 VEIARKNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTNDTD 347 (384)
T ss_dssp HHHHHHHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEESCTT
T ss_pred HHHHHHHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCHH
Confidence 44444 34664 34556677778776 5999999852 1111012345667777778877 998888877543
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0002 Score=76.67 Aligned_cols=283 Identities=17% Similarity=0.197 Sum_probs=141.9
Q ss_pred CeEEEECCccchhHHHhh-cCCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccccccc-
Q 044932 310 RVVLEIGSADLSFVASLL-AKEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWHA- 387 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La-~~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~~- 387 (689)
.+||+++-+.|.++..|. ...|+.+.= ...+. +....+|+..... .. +..+...||+|+.. ++=..
T Consensus 47 ~~~l~~n~~~g~~~~~~~~~~~~~~~~~----~~~~~-~~l~~~~~~~~~~--~~--~~~~~~~~d~v~~~---~Pk~k~ 114 (381)
T 3dmg_A 47 ERALDLNPGVGWGSLPLEGRMAVERLET----SRAAF-RCLTASGLQARLA--LP--WEAAAGAYDLVVLA---LPAGRG 114 (381)
T ss_dssp SEEEESSCTTSTTTGGGBTTBEEEEEEC----BHHHH-HHHHHTTCCCEEC--CG--GGSCTTCEEEEEEE---CCGGGC
T ss_pred CcEEEecCCCCccccccCCCCceEEEeC----cHHHH-HHHHHcCCCcccc--CC--ccCCcCCCCEEEEE---CCcchh
Confidence 589999999998777776 445666632 11222 2233457765321 11 11234789998742 11001
Q ss_pred --cHHHHHHHHHhccCCCcEEEEEcCCC-chhHHHHHHHHHHhcceeEEEeeccccCceeEEEEEeCCCchhHhhhhCCC
Q 044932 388 --HGGKLLLEMNRILRPSGYFILSTKHD-SIEEEEALTTLTASICWNILAHKTDEISEMGVKIYQKPESNDIYELRRKKN 464 (689)
Q Consensus 388 --d~~~aL~EI~RVLRPGG~fVIsdp~~-~le~~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqKp~~~~cy~~r~~~~ 464 (689)
.....|.++.+.|+|||.+++..... .++ .....+...+.|.....+.. ...+..|++. ...
T Consensus 115 ~~~~~~~l~~~~~~l~~g~~i~~~g~~~~g~~--~~~~~~~~~~~~~~~~~~~~---~~r~~~~~~~----------~~~ 179 (381)
T 3dmg_A 115 TAYVQASLVAAARALRMGGRLYLAGDKNKGFE--RYFKEARALLGYGVVVRREG---PYRVALLEKE----------KEA 179 (381)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEEGGGTHH--HHHHHHHHHHSCEEEEEEET---TEEEEEEECC----------SCC
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEEccHHHHH--HHHHHHHhhhcccccccccc---CcEEEEEEcc----------CCC
Confidence 23578889999999999999887542 222 22334444556654433321 1123333331 011
Q ss_pred CCCCCCCCCCCCccccccccccccCCccccccCCCCCCCCccccccCCCccCchhhhhhhhHHHHHHHHHhhhcccCCCC
Q 044932 465 PPLCKENENPDAAWYVPMKTCLHTIPSSIEQHGTEWPEEWPKRLETYPDWLNDKEKLSSDTRHWKAIVDRSYLTGLGIDW 544 (689)
Q Consensus 465 p~~C~~~~d~d~~Wy~~l~~Ci~~~p~~~~~~~~~~~~~wP~Rl~~~p~rl~~~e~f~~D~~~W~~~v~~~y~~~l~~~~ 544 (689)
| .....|. .....+. +.. -++...|. .-+.......+......+.+ ++. ...
T Consensus 180 p-------~~~~~w~-~~~~~~~---------g~~------~~~~~~pg-vFs~~~~d~~t~~ll~~l~~-~l~---~~~ 231 (381)
T 3dmg_A 180 P-------PLPSLWR-AFSARIL---------GAE------YTFHHLPG-VFSAGKVDPASLLLLEALQE-RLG---PEG 231 (381)
T ss_dssp C-------CCCCCCE-EEEEEET---------TEE------EEEEECTT-CTTTTSCCHHHHHHHHHHHH-HHC---TTT
T ss_pred C-------CCccccc-eeeEEec---------Cce------EEEEeCCC-ceeCCCCCHHHHHHHHHHHH-hhc---ccC
Confidence 1 1123343 2222111 100 01111111 11111122334444444432 211 001
Q ss_pred CCeeEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhh----hhcccc-chhhccccCCCCCCCccchhhcccccc
Q 044932 545 SKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPV----IYDRGL-VGIYHDWCESFGTYPRSYDLLHADHLF 618 (689)
Q Consensus 545 ~~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~v----I~~RGL-ig~yhdwce~f~typrTyDLlHa~~lf 618 (689)
..-..|+|+++|.|.|+.+|..... .|+-++.. ..+.. +-..|+ +-+++.=+..+..-+.+||+|-++..|
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~g~---~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~ 308 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARMGA---EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPF 308 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHTTC---EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCC
T ss_pred CCCCEEEEEeeeCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCch
Confidence 1234799999999999999987653 34433321 22211 111222 222222222222223799999998887
Q ss_pred ccccCC-cCCccceeeeeccccccCcEEEEeCc
Q 044932 619 SRLKSR-CRQPVSIVVEMDRILRPGGWAIVRDK 650 (689)
Q Consensus 619 s~~~~~-c~~~~~illEmDRILRP~G~~iirD~ 650 (689)
...... -.....++-++-|+|+|||.++|--+
T Consensus 309 ~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 309 HVGGAVILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp CTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhcccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 643221 11124578899999999999999643
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.83 E-value=3.3e-05 Score=82.75 Aligned_cols=101 Identities=12% Similarity=0.046 Sum_probs=67.1
Q ss_pred CCCeEEEECCccchhHHHhhc------------------------------------------CCeEEEEcCCcccHHHH
Q 044932 308 NIRVVLEIGSADLSFVASLLA------------------------------------------KEVLTLTVGLKDDLVDL 345 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~------------------------------------------~~V~gmDIsp~D~seam 345 (689)
...+|||.+||+|.|+..++. ..|+|+|+++. +
T Consensus 195 ~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~-----a 269 (385)
T 3ldu_A 195 AGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEE-----S 269 (385)
T ss_dssp TTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHH-----H
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHH-----H
Confidence 457899999999998654431 24899999874 4
Q ss_pred HHHHHH----cCCC--cEEecCCCCCCCCCCCCcceEEecccccc-c--cccHHHHHHHHHhccCC--CcEEEEEcCCCc
Q 044932 346 AQVALE----RGFP--AVVSPLGNRRLPFPSGVFDAIHCDGCSIT-W--HAHGGKLLLEMNRILRP--SGYFILSTKHDS 414 (689)
Q Consensus 346 lq~A~e----RGL~--~i~~~~dt~~LPFpD~SFDlVhcs~cli~-W--~~d~~~aL~EI~RVLRP--GG~fVIsdp~~~ 414 (689)
++.|.+ .|+. ..+...|...++.+ .+||+|+|.--... . ..+...++.++.++||+ ||.+++.++...
T Consensus 270 i~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~~ 348 (385)
T 3ldu_A 270 IDIARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSYED 348 (385)
T ss_dssp HHHHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESCTT
T ss_pred HHHHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECCHH
Confidence 444443 4664 34556677777776 59999998521110 0 12334677788888887 888888777543
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=3.7e-05 Score=79.99 Aligned_cols=67 Identities=15% Similarity=0.053 Sum_probs=49.8
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc--C-CCcEEecCCCCCCCCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER--G-FPAVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR--G-L~~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
...+|||||||+|.++..|+.. .|+++|+++.. ++.+.++ + -...+...|...+++++.+||+|+++
T Consensus 50 ~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~l-----i~~a~~~~~~~~~v~vi~gD~l~~~~~~~~fD~Iv~N 121 (295)
T 3gru_A 50 KDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSL-----EPYANKLKELYNNIEIIWGDALKVDLNKLDFNKVVAN 121 (295)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGG-----HHHHHHHHHHCSSEEEEESCTTTSCGGGSCCSEEEEE
T ss_pred CcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHH-----HHHHHHHhccCCCeEEEECchhhCCcccCCccEEEEe
Confidence 3568999999999999888753 59999999853 3333332 1 23345567778889998899999865
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.78 E-value=6.9e-05 Score=80.65 Aligned_cols=98 Identities=9% Similarity=0.087 Sum_probs=65.4
Q ss_pred CCCeEEEECCccchhHHHhh--cC----------------------------------------CeEEEEcCCcccHHHH
Q 044932 308 NIRVVLEIGSADLSFVASLL--AK----------------------------------------EVLTLTVGLKDDLVDL 345 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La--~~----------------------------------------~V~gmDIsp~D~seam 345 (689)
....|||.+||+|.|+..++ .. .|+++|+++. |
T Consensus 201 ~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~-----a 275 (393)
T 3k0b_A 201 PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDAR-----L 275 (393)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHH-----H
T ss_pred CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHH-----H
Confidence 45789999999999864332 22 3999999874 4
Q ss_pred HHHHHH----cCCC--cEEecCCCCCCCCCCCCcceEEecccccccc------ccHHHHHHHHHhccCC--CcEEEEEcC
Q 044932 346 AQVALE----RGFP--AVVSPLGNRRLPFPSGVFDAIHCDGCSITWH------AHGGKLLLEMNRILRP--SGYFILSTK 411 (689)
Q Consensus 346 lq~A~e----RGL~--~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~------~d~~~aL~EI~RVLRP--GG~fVIsdp 411 (689)
++.|.+ .|+. ..+...|...++++ .+||+|+|.- +|. .+...++.++.++||+ ||.+++.++
T Consensus 276 l~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NP---PYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 351 (393)
T 3k0b_A 276 IEIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANP---PYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTS 351 (393)
T ss_dssp HHHHHHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECC---CCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred HHHHHHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECC---CCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 444443 4664 34556677778776 5999999862 222 1233456667777766 888888777
Q ss_pred CCc
Q 044932 412 HDS 414 (689)
Q Consensus 412 ~~~ 414 (689)
...
T Consensus 352 ~~~ 354 (393)
T 3k0b_A 352 YEL 354 (393)
T ss_dssp CTT
T ss_pred CHH
Confidence 543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00051 Score=73.22 Aligned_cols=96 Identities=13% Similarity=0.042 Sum_probs=57.8
Q ss_pred CeEEEECCccchhHHHhhcCCeEEEEcCCcccHHHHHH-HHHHcCCCcE-EecCCCCCCCCCCCCcceEEecccccc-cc
Q 044932 310 RVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQ-VALERGFPAV-VSPLGNRRLPFPSGVFDAIHCDGCSIT-WH 386 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~~~V~gmDIsp~D~seamlq-~A~eRGL~~i-~~~~dt~~LPFpD~SFDlVhcs~cli~-W~ 386 (689)
.+||.+|.+.|.++..|...+++.+.=+ -.+...++ -+...|+... +...++.. ..+ ..||+|+.. ++ -.
T Consensus 40 ~~~~~~~d~~gal~~~~~~~~~~~~~ds--~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~-~~~~~v~~~---lpk~~ 112 (375)
T 4dcm_A 40 GPVLILNDAFGALSCALAEHKPYSIGDS--YISELATRENLRLNGIDESSVKFLDSTA-DYP-QQPGVVLIK---VPKTL 112 (375)
T ss_dssp SCEEEECCSSSHHHHHTGGGCCEEEESC--HHHHHHHHHHHHHTTCCGGGSEEEETTS-CCC-SSCSEEEEE---CCSCH
T ss_pred CCEEEECCCCCHHHHhhccCCceEEEhH--HHHHHHHHHHHHHcCCCccceEeccccc-ccc-cCCCEEEEE---cCCCH
Confidence 4699999999999988887777766411 12222222 2333466432 21122211 233 689998742 11 01
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 387 AHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 387 ~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
......|..+...|+||+.+++....
T Consensus 113 ~~l~~~L~~l~~~l~~~~~i~~~g~~ 138 (375)
T 4dcm_A 113 ALLEQQLRALRKVVTSDTRIIAGAKA 138 (375)
T ss_dssp HHHHHHHHHHHTTCCTTSEEEEEEEG
T ss_pred HHHHHHHHHHHhhCCCCCEEEEEecc
Confidence 12346788899999999999887653
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00017 Score=75.27 Aligned_cols=119 Identities=12% Similarity=0.017 Sum_probs=67.7
Q ss_pred CCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHcCCCc-EEecCCCCCCCCCC---CCcceEEe
Q 044932 308 NIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALERGFPA-VVSPLGNRRLPFPS---GVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eRGL~~-i~~~~dt~~LPFpD---~SFDlVhc 378 (689)
...+|||+|||+|+.+..|+. ..|+++|+++... ....+.+...|+.. .+...|...++..+ .+||.|++
T Consensus 102 ~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l-~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~ 180 (309)
T 2b9e_A 102 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRL-ASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL 180 (309)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred CCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEEE
Confidence 356899999999998877664 2499999986422 11222223336643 34455555554332 57999996
Q ss_pred ----ccc-------ccccc----c-cH-------HHHHHHHHhccCCCcEEEEEcCCCch-hHHHHHHHHHHhc
Q 044932 379 ----DGC-------SITWH----A-HG-------GKLLLEMNRILRPSGYFILSTKHDSI-EEEEALTTLTASI 428 (689)
Q Consensus 379 ----s~c-------li~W~----~-d~-------~~aL~EI~RVLRPGG~fVIsdp~~~l-e~~~~ie~La~~l 428 (689)
+.. -+.|. . +. ..+|....++|+ ||+++.++-.-.. +....+..+++..
T Consensus 181 D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~Ene~~v~~~l~~~ 253 (309)
T 2b9e_A 181 DPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEENEDVVRDALQQN 253 (309)
T ss_dssp CCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGGTHHHHHHHHTTS
T ss_pred cCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHHhHHHHHHHHHhC
Confidence 211 11221 1 11 235777778887 9999987643222 2233456665543
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.65 E-value=4.7e-05 Score=85.12 Aligned_cols=139 Identities=9% Similarity=0.029 Sum_probs=81.4
Q ss_pred CCeEEEECCccchhHHHhhc----------------------CCeEEEEcCCcccHHHHHHHHHH----cCCC------c
Q 044932 309 IRVVLEIGSADLSFVASLLA----------------------KEVLTLTVGLKDDLVDLAQVALE----RGFP------A 356 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----------------------~~V~gmDIsp~D~seamlq~A~e----RGL~------~ 356 (689)
..+|||.+||+|.|...++. ..++|+|+++. ++..|+. +|+. .
T Consensus 170 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~-----~~~lA~~nl~l~gi~~~~~~~~ 244 (541)
T 2ar0_A 170 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPG-----TRRLALMNCLLHDIEGNLDHGG 244 (541)
T ss_dssp TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHH-----HHHHHHHHHHTTTCCCBGGGTB
T ss_pred CCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHH-----HHHHHHHHHHHhCCCccccccC
Confidence 46899999999998754432 25899999874 4444433 3554 2
Q ss_pred EEecCCCCCCC-CCCCCcceEEecc--cccccc-----------ccHHHHHHHHHhccCCCcEEEEEcCCCchh---HHH
Q 044932 357 VVSPLGNRRLP-FPSGVFDAIHCDG--CSITWH-----------AHGGKLLLEMNRILRPSGYFILSTKHDSIE---EEE 419 (689)
Q Consensus 357 i~~~~dt~~LP-FpD~SFDlVhcs~--cli~W~-----------~d~~~aL~EI~RVLRPGG~fVIsdp~~~le---~~~ 419 (689)
.+...|+...+ ++...||+|++.- ....+. .....+|..+.+.|+|||++++..|...+. ...
T Consensus 245 ~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~L~~~~~~~ 324 (541)
T 2ar0_A 245 AIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGT 324 (541)
T ss_dssp SEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHH
T ss_pred CeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCcceecCcHHH
Confidence 34445553332 4567899999852 111110 012367889999999999999998876442 123
Q ss_pred HHHHH-HHhcceeEEEe-ecccc----CceeEEEEEeCC
Q 044932 420 ALTTL-TASICWNILAH-KTDEI----SEMGVKIYQKPE 452 (689)
Q Consensus 420 ~ie~L-a~~l~W~~v~~-~~~~~----g~~~i~IwqKp~ 452 (689)
.+.+. ++......+.. ....+ -...|++++|..
T Consensus 325 ~iR~~L~~~~~l~~ii~Lp~~~F~~t~v~t~Ilvl~k~~ 363 (541)
T 2ar0_A 325 DIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGT 363 (541)
T ss_dssp HHHHHHHHHEEEEEEEECCSSCSSSCSCCEEEEEEEEBC
T ss_pred HHHHHHhhcCCEEEEEEcCcCcccCCCCcEEEEEEECCC
Confidence 45443 44332232222 22222 123577777753
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.65 E-value=3.1e-05 Score=83.00 Aligned_cols=99 Identities=14% Similarity=0.166 Sum_probs=61.5
Q ss_pred CCeEEEECCccchhHHHhhcC--------------------CeEEEEcCCcccHHHHHHHHHH-----cCCCcEEecCCC
Q 044932 309 IRVVLEIGSADLSFVASLLAK--------------------EVLTLTVGLKDDLVDLAQVALE-----RGFPAVVSPLGN 363 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--------------------~V~gmDIsp~D~seamlq~A~e-----RGL~~i~~~~dt 363 (689)
.-+|+|+||++|..+..++.. .|..-|+...|.. .+-..+. ++.....++.++
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFn--tlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFN--AIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHH--HHHTTTTTSCSCTTCEEEEEEESC
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHH--HHHHhcchhcccCCCEEEEecchh
Confidence 457999999999765433321 2666788776653 2211110 011111222222
Q ss_pred -CCCCCCCCCcceEEeccccccccccH---------------------------------HHHHHHHHhccCCCcEEEEE
Q 044932 364 -RRLPFPSGVFDAIHCDGCSITWHAHG---------------------------------GKLLLEMNRILRPSGYFILS 409 (689)
Q Consensus 364 -~~LPFpD~SFDlVhcs~cli~W~~d~---------------------------------~~aL~EI~RVLRPGG~fVIs 409 (689)
..-.||++|||+||++.+ +||..+. ..+|.-..|.|+|||.+++.
T Consensus 130 Fy~rlfp~~S~d~v~Ss~a-LHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~ 208 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYS-LMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT 208 (359)
T ss_dssp SSSCCSCTTCBSCEEEESC-TTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred hhhccCCCCceEEEEehhh-hhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 334699999999998754 5897431 12377889999999999998
Q ss_pred c
Q 044932 410 T 410 (689)
Q Consensus 410 d 410 (689)
.
T Consensus 209 ~ 209 (359)
T 1m6e_X 209 I 209 (359)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=3.8e-05 Score=82.28 Aligned_cols=96 Identities=17% Similarity=0.068 Sum_probs=60.8
Q ss_pred CCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc---------------CCC-cEEecCCCCCCC-
Q 044932 309 IRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER---------------GFP-AVVSPLGNRRLP- 367 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR---------------GL~-~i~~~~dt~~LP- 367 (689)
..+|||+|||+|.++..++.. .|+++|+++... ..+.+-+... |+. ..+...|...+.
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av-~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAY-ELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHH-HHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 468999999999998776642 489999987422 1111222223 554 333344432221
Q ss_pred CCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 368 FPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 368 FpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
...+.||+|++.- . .....+|..+.+.|||||+++++.
T Consensus 127 ~~~~~fD~I~lDP----~-~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDP----F-GSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECC----S-SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCC----C-CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 1135899998531 1 122478889999999999998874
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00014 Score=73.81 Aligned_cols=64 Identities=14% Similarity=0.201 Sum_probs=45.2
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcC---CCcEEecCCCCCCCCCC----CCcceE
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERG---FPAVVSPLGNRRLPFPS----GVFDAI 376 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRG---L~~i~~~~dt~~LPFpD----~SFDlV 376 (689)
...+|||||||+|.++..|+.. .|+++|+++ .|++.+.++- -...+...|...++|++ ..||+|
T Consensus 29 ~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~-----~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~vv 101 (255)
T 3tqs_A 29 KTDTLVEIGPGRGALTDYLLTECDNLALVEIDR-----DLVAFLQKKYNQQKNITIYQNDALQFDFSSVKTDKPLRVV 101 (255)
T ss_dssp TTCEEEEECCTTTTTHHHHTTTSSEEEEEECCH-----HHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCCSSCEEEE
T ss_pred CcCEEEEEcccccHHHHHHHHhCCEEEEEECCH-----HHHHHHHHHHhhCCCcEEEEcchHhCCHHHhccCCCeEEE
Confidence 3578999999999999999875 599999886 4666666541 23345556777777653 457733
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.52 E-value=5.3e-05 Score=71.22 Aligned_cols=95 Identities=18% Similarity=0.189 Sum_probs=64.3
Q ss_pred EEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhcc----cc---chhhccccCCCCCCCccchhhcccccccc
Q 044932 549 NVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDR----GL---VGIYHDWCESFGTYPRSYDLLHADHLFSR 620 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~R----GL---ig~yhdwce~f~typrTyDLlHa~~lfs~ 620 (689)
.|+|+++|.|.++..|...+- .+|+-++- +..+...-.+ |+ |-+++.=.+.++.-+.+||+|.+.++|..
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 123 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQSD--FSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFF 123 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHSE--EEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGG
T ss_pred EEEEECCCCCHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhh
Confidence 899999999999999987632 23444443 2333322222 33 22233223445545689999999998887
Q ss_pred ccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 621 LKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 621 ~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
+.+ ...+|-++-|+|+|||.++|.+
T Consensus 124 ~~~----~~~~l~~~~~~L~pgG~l~~~~ 148 (219)
T 3dlc_A 124 WED----VATAFREIYRILKSGGKTYIGG 148 (219)
T ss_dssp CSC----HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccC----HHHHHHHHHHhCCCCCEEEEEe
Confidence 633 2557889999999999999974
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00016 Score=74.33 Aligned_cols=64 Identities=22% Similarity=0.259 Sum_probs=46.4
Q ss_pred eEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc--CCCcEEecCCCCCCCCCCC-CcceEEec
Q 044932 311 VVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER--GFPAVVSPLGNRRLPFPSG-VFDAIHCD 379 (689)
Q Consensus 311 ~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR--GL~~i~~~~dt~~LPFpD~-SFDlVhcs 379 (689)
+|||||||+|.++..|+.. .|+++|+++. |++.+.++ +....+...|...+++++. .||.|++.
T Consensus 49 ~VLEIG~G~G~lt~~L~~~~~~V~avEid~~-----~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~~iv~N 117 (271)
T 3fut_A 49 PVFEVGPGLGALTRALLEAGAEVTAIEKDLR-----LRPVLEETLSGLPVRLVFQDALLYPWEEVPQGSLLVAN 117 (271)
T ss_dssp CEEEECCTTSHHHHHHHHTTCCEEEEESCGG-----GHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTEEEEEE
T ss_pred eEEEEeCchHHHHHHHHHcCCEEEEEECCHH-----HHHHHHHhcCCCCEEEEECChhhCChhhccCccEEEec
Confidence 8999999999999988865 5999999874 55555554 2233455567777777643 67887754
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=97.48 E-value=7.6e-05 Score=70.56 Aligned_cols=129 Identities=18% Similarity=0.201 Sum_probs=84.8
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhccccchhhccccCCC---CCCC-ccchhhcccccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDRGLVGIYHDWCESF---GTYP-RSYDLLHADHLFSRLK 622 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~RGLig~yhdwce~f---~typ-rTyDLlHa~~lfs~~~ 622 (689)
..|||+++|.|.++.+|..... +|+-++- +..+...-.++.+.+.+.-.+.+ +..+ .+||+|.+.++|. .
T Consensus 54 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~- 128 (227)
T 3e8s_A 54 ERVLDLGCGEGWLLRALADRGI---EAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-H- 128 (227)
T ss_dssp SEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-S-
T ss_pred CEEEEeCCCCCHHHHHHHHCCC---EEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh-h-
Confidence 6899999999999999988754 3444443 24445555554333332111222 3334 4599999998887 2
Q ss_pred CCcCCccceeeeeccccccCcEEEEeCch--------------------------------hhHHHHHHHHhhcceeEEE
Q 044932 623 SRCRQPVSIVVEMDRILRPGGWAIVRDKV--------------------------------EILDPLEGILRSLHWEIRM 670 (689)
Q Consensus 623 ~~c~~~~~illEmDRILRP~G~~iirD~~--------------------------------~~l~~v~~i~~~lrW~~~~ 670 (689)
.+ ...+|-++-|+|+|||+++|.+.. ..+..+..++..-.+.+.-
T Consensus 129 --~~-~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 205 (227)
T 3e8s_A 129 --QD-IIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVS 205 (227)
T ss_dssp --SC-CHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEE
T ss_pred --hh-HHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEE
Confidence 34 356899999999999999997520 1468888888888888754
Q ss_pred e-ecC------CCceEEEEEe
Q 044932 671 T-YAQ------DKEGILCAQK 684 (689)
Q Consensus 671 ~-~~~------~~E~iL~~~K 684 (689)
. ... ...-+++++|
T Consensus 206 ~~~~~~~~~~~~~~~~~va~k 226 (227)
T 3e8s_A 206 LQEPQHPQSAVPQSLLMVAER 226 (227)
T ss_dssp EECCCCTTCSSCSCEEEEEEE
T ss_pred EecCCCCCCCCceeEEEEeec
Confidence 3 211 1234667776
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00018 Score=80.67 Aligned_cols=137 Identities=14% Similarity=0.044 Sum_probs=81.2
Q ss_pred eEEEECCccchhHHHhh-------------------cCCeEEEEcCCcccHHHHHHHHHH----cCCCcEE--ecCCCCC
Q 044932 311 VVLEIGSADLSFVASLL-------------------AKEVLTLTVGLKDDLVDLAQVALE----RGFPAVV--SPLGNRR 365 (689)
Q Consensus 311 ~VLDVGCGtGsfaa~La-------------------~~~V~gmDIsp~D~seamlq~A~e----RGL~~i~--~~~dt~~ 365 (689)
+|||.+||+|+|...++ ...++|+|+++. ++.+|+. +|+...+ ...|+..
T Consensus 247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~-----~~~lA~~Nl~l~gi~~~i~i~~gDtL~ 321 (544)
T 3khk_A 247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPT-----TWKLAAMNMVIRGIDFNFGKKNADSFL 321 (544)
T ss_dssp EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHH-----HHHHHHHHHHHTTCCCBCCSSSCCTTT
T ss_pred eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHH-----HHHHHHHHHHHhCCCcccceeccchhc
Confidence 89999999999865442 235788888874 3333332 4655433 3445444
Q ss_pred CC-CCCCCcceEEecc--ccccccc--------------------------cHHHHHHHHHhccCCCcEEEEEcCCCchh
Q 044932 366 LP-FPSGVFDAIHCDG--CSITWHA--------------------------HGGKLLLEMNRILRPSGYFILSTKHDSIE 416 (689)
Q Consensus 366 LP-FpD~SFDlVhcs~--cli~W~~--------------------------d~~~aL~EI~RVLRPGG~fVIsdp~~~le 416 (689)
.| +++..||+|++.- ....|.. ..-.+|..+.+.|+|||++++..|...+.
T Consensus 322 ~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~ 401 (544)
T 3khk_A 322 DDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGSMS 401 (544)
T ss_dssp SCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHHHH
T ss_pred CcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecchhhh
Confidence 33 5678999999851 1111210 01257889999999999999998876542
Q ss_pred ----HHHHHHHHHHhccee-EEEe-ecccc----CceeEEEEEeCC
Q 044932 417 ----EEEALTTLTASICWN-ILAH-KTDEI----SEMGVKIYQKPE 452 (689)
Q Consensus 417 ----~~~~ie~La~~l~W~-~v~~-~~~~~----g~~~i~IwqKp~ 452 (689)
....+.+.+-.-++- .+.. ....+ -...|++++|..
T Consensus 402 ~~~~~~~~iRk~Lle~~~l~aII~LP~~lF~~t~i~t~Ilvl~K~k 447 (544)
T 3khk_A 402 SNTNNEGEIRKTLVEQDLVECMVALPGQLFTNTQIPACIWFLTKDK 447 (544)
T ss_dssp CCGGGHHHHHHHHHHTTCEEEEEECCTTBCCSCSSCEEEEEEESCC
T ss_pred cCcchHHHHHHHHHhCCcHhEEEECCCCCCCCCCCCeEEEEEecCC
Confidence 223455554444442 2221 11111 134577777754
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00013 Score=69.49 Aligned_cols=132 Identities=16% Similarity=0.203 Sum_probs=84.2
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhccc--cchhhccccCCCCCCCccchhhccccccccccCC
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDRG--LVGIYHDWCESFGTYPRSYDLLHADHLFSRLKSR 624 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~RG--Lig~yhdwce~f~typrTyDLlHa~~lfs~~~~~ 624 (689)
..|+|+++|.|.++.+|..... +|+-++-. ..+...-.+- -|-+++.=.+.++ ++.+||+|.+.++|....+.
T Consensus 47 ~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~ 122 (220)
T 3hnr_A 47 GNVLEFGVGTGNLTNKLLLAGR---TVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFE-VPTSIDTIVSTYAFHHLTDD 122 (220)
T ss_dssp SEEEEECCTTSHHHHHHHHTTC---EEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCC-CCSCCSEEEEESCGGGSCHH
T ss_pred CeEEEeCCCCCHHHHHHHhCCC---eEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcC-CCCCeEEEEECcchhcCChH
Confidence 4799999999999999987743 34444432 3333322221 1222222222233 33899999999998876443
Q ss_pred cCCccceeeeeccccccCcEEEEeCch----h---------------------------hHHHHHHHHhhcceeEEEeec
Q 044932 625 CRQPVSIVVEMDRILRPGGWAIVRDKV----E---------------------------ILDPLEGILRSLHWEIRMTYA 673 (689)
Q Consensus 625 c~~~~~illEmDRILRP~G~~iirD~~----~---------------------------~l~~v~~i~~~lrW~~~~~~~ 673 (689)
-. ..+|-++-|+|+|||.++|.+.. . ....++.++....+++.....
T Consensus 123 ~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~ 200 (220)
T 3hnr_A 123 EK--NVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTRL 200 (220)
T ss_dssp HH--HHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEEEC
T ss_pred HH--HHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEeec
Confidence 22 23789999999999999998521 1 236677788877887765544
Q ss_pred CCCceEEEEEec
Q 044932 674 QDKEGILCAQKT 685 (689)
Q Consensus 674 ~~~E~iL~~~K~ 685 (689)
.+---++.++|+
T Consensus 201 ~~~~w~~~~~~~ 212 (220)
T 3hnr_A 201 NHFVWVMEATKQ 212 (220)
T ss_dssp SSSEEEEEEEEC
T ss_pred cceEEEEeehhh
Confidence 444567777664
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=4.6e-05 Score=76.04 Aligned_cols=107 Identities=13% Similarity=0.160 Sum_probs=67.6
Q ss_pred hhcccCCCCCCeeEEeecCCcchhHHHHhc-cCCceEEEeccCCC-CCchhhhhc----cccchhhccccCCCCCCCccc
Q 044932 536 YLTGLGIDWSKIRNVMDMKSIYGGFAAALA-QQKIWVMNVVPVHA-PDTLPVIYD----RGLVGIYHDWCESFGTYPRSY 609 (689)
Q Consensus 536 y~~~l~~~~~~iRNvmDMna~~GgFAAal~-~~~vWVMNvvp~~~-~~tL~vI~~----RGLig~yhdwce~f~typrTy 609 (689)
++..+.+..+ ..|+|+++|.|+++..|. ..+. +|+-++- +..+...-. .|+..-.+-.+..+..+|.+|
T Consensus 56 ~~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~f 130 (287)
T 1kpg_A 56 ALGKLGLQPG--MTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV 130 (287)
T ss_dssp HHTTTTCCTT--CEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred HHHHcCCCCc--CEEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCe
Confidence 3444455444 479999999999998887 3343 3444443 233333322 243221111122223356999
Q ss_pred hhhccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 610 DLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 610 DLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
|+|.+.++|...... . ...+|-++-|+|+|||.++|.+
T Consensus 131 D~v~~~~~l~~~~~~-~-~~~~l~~~~~~LkpgG~l~~~~ 168 (287)
T 1kpg_A 131 DRIVSIGAFEHFGHE-R-YDAFFSLAHRLLPADGVMLLHT 168 (287)
T ss_dssp SEEEEESCGGGTCTT-T-HHHHHHHHHHHSCTTCEEEEEE
T ss_pred eEEEEeCchhhcChH-H-HHHHHHHHHHhcCCCCEEEEEE
Confidence 999999999877432 2 2467899999999999999975
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00057 Score=78.73 Aligned_cols=121 Identities=18% Similarity=0.205 Sum_probs=65.1
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhh----ccccch-----hhccccCCCCCCCccchhhccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIY----DRGLVG-----IYHDWCESFGTYPRSYDLLHADHL 617 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~----~RGLig-----~yhdwce~f~typrTyDLlHa~~l 617 (689)
..|+|+.+|.|+|+.++.....- .|+-++.. ..|...- .-|+-+ +-.|..+.++....+||+|-++--
T Consensus 541 ~~VLDlg~GtG~~sl~aa~~ga~--~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP 618 (703)
T 3v97_A 541 KDFLNLFSYTGSATVHAGLGGAR--STTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP 618 (703)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred CcEEEeeechhHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence 36999999999998877654321 13333432 2222221 123321 112322223334578999987653
Q ss_pred -cccccC-------CcCCccceeeeeccccccCcEEEEeCchhhHHHHHHHHhhcceeEEEe
Q 044932 618 -FSRLKS-------RCRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGILRSLHWEIRMT 671 (689)
Q Consensus 618 -fs~~~~-------~c~~~~~illEmDRILRP~G~~iirD~~~~l~~v~~i~~~lrW~~~~~ 671 (689)
|+.-.. .-. ...|+-++=|+|+|||++++.-.......-...+....++....
T Consensus 619 ~f~~~~~~~~~~~~~~~-~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~~~~l~~~g~~~~~i 679 (703)
T 3v97_A 619 TFSNSKRMEDAFDVQRD-HLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLKAQEI 679 (703)
T ss_dssp SBC-------CCBHHHH-HHHHHHHHHHHEEEEEEEEEEECCTTCCCCHHHHHHTTEEEEEC
T ss_pred cccCCccchhHHHHHHH-HHHHHHHHHHhcCCCcEEEEEECCcccccCHHHHHHcCCceeee
Confidence 221110 012 24567788899999999999866532222234445555654443
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00031 Score=66.85 Aligned_cols=119 Identities=14% Similarity=0.063 Sum_probs=78.7
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCCCchhhhhccccchhhccccCCCCCCCccchhhccccccccccCCcCC
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAPDTLPVIYDRGLVGIYHDWCESFGTYPRSYDLLHADHLFSRLKSRCRQ 627 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~~tL~vI~~RGLig~yhdwce~f~typrTyDLlHa~~lfs~~~~~c~~ 627 (689)
..|+|+++|.|.++..|. ..|...-.-|. . + -+.+.-.+.++.-+.+||+|.+..+|. + -.
T Consensus 69 ~~vLDiG~G~G~~~~~l~-~~v~~~D~s~~----~--~-------~~~~~d~~~~~~~~~~fD~v~~~~~l~-~---~~- 129 (215)
T 2zfu_A 69 LVVADFGCGDCRLASSIR-NPVHCFDLASL----D--P-------RVTVCDMAQVPLEDESVDVAVFCLSLM-G---TN- 129 (215)
T ss_dssp SCEEEETCTTCHHHHHCC-SCEEEEESSCS----S--T-------TEEESCTTSCSCCTTCEEEEEEESCCC-S---SC-
T ss_pred CeEEEECCcCCHHHHHhh-ccEEEEeCCCC----C--c-------eEEEeccccCCCCCCCEeEEEEehhcc-c---cC-
Confidence 469999999999999884 33333222221 1 1 111111223454567999999988884 2 23
Q ss_pred ccceeeeeccccccCcEEEEeCchh---hHHHHHHHHhhcceeEEEeecC-CCceEEEEEec
Q 044932 628 PVSIVVEMDRILRPGGWAIVRDKVE---ILDPLEGILRSLHWEIRMTYAQ-DKEGILCAQKT 685 (689)
Q Consensus 628 ~~~illEmDRILRP~G~~iirD~~~---~l~~v~~i~~~lrW~~~~~~~~-~~E~iL~~~K~ 685 (689)
...+|-++-|+|+|||.++|-+-.. ....+..++....++....... ..-.+++++|.
T Consensus 130 ~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k~ 191 (215)
T 2zfu_A 130 IRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDLTNSHFFLFDFQKT 191 (215)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEECCSTTCEEEEEEEC
T ss_pred HHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEec
Confidence 3568899999999999999976443 5677888888888876544322 23467777775
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00011 Score=79.45 Aligned_cols=96 Identities=11% Similarity=0.009 Sum_probs=62.4
Q ss_pred CCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHcCCCc---EEecCCCCCC-C-CCCCCcceEEe
Q 044932 309 IRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALERGFPA---VVSPLGNRRL-P-FPSGVFDAIHC 378 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eRGL~~---i~~~~dt~~L-P-FpD~SFDlVhc 378 (689)
..+|||++||+|.++..++. ..|+++|+++.-. +.+.+-+...|+.. .+...|+..+ . .....||+|++
T Consensus 53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av-~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAI-EIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHH-HHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 46899999999999987765 2489999987421 22222333346653 3444443221 1 11368999987
Q ss_pred ccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 379 DGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
.- + ..+..++..+.+.|+|||+++++.
T Consensus 132 DP----~-g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 132 DP----F-GTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CC----S-SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC----C-cCHHHHHHHHHHHhCCCCEEEEEe
Confidence 53 1 112368888999999999999875
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00033 Score=80.15 Aligned_cols=94 Identities=13% Similarity=0.095 Sum_probs=59.5
Q ss_pred CCeEEEECCccchh---HHHhhc---C--CeEEEEcCCcccHHHHHHHHHHcCCCcE--EecCCCCCCCCCCCCcceEEe
Q 044932 309 IRVVLEIGSADLSF---VASLLA---K--EVLTLTVGLKDDLVDLAQVALERGFPAV--VSPLGNRRLPFPSGVFDAIHC 378 (689)
Q Consensus 309 ~R~VLDVGCGtGsf---aa~La~---~--~V~gmDIsp~D~seamlq~A~eRGL~~i--~~~~dt~~LPFpD~SFDlVhc 378 (689)
..+|||||||+|-+ ++.... . .|+++.-+|. ..-.++...+.+.... +...+++.+-.| ..+|+|++
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~--A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVS 434 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN--AVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVS 434 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH--HHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEEC
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH--HHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEE
Confidence 45799999999975 222222 2 4788887762 2334455555565443 334456666666 68999986
Q ss_pred c---cccccccccHHHHHHHHHhccCCCcEEE
Q 044932 379 D---GCSITWHAHGGKLLLEMNRILRPSGYFI 407 (689)
Q Consensus 379 s---~cli~W~~d~~~aL~EI~RVLRPGG~fV 407 (689)
- .+++. +.....|.-.+|.|||||.++
T Consensus 435 EwMG~fLl~--E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 435 ELLGSFADN--ELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CCCBTTBGG--GCHHHHHHHHGGGEEEEEEEE
T ss_pred EcCcccccc--cCCHHHHHHHHHhcCCCcEEc
Confidence 3 22222 223357777899999999874
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00029 Score=71.42 Aligned_cols=66 Identities=12% Similarity=0.104 Sum_probs=44.8
Q ss_pred CCCeEEEECCccchhHHHhhc-CC--eEEEEcCCcccHHHHHHHHHHcCC---CcEEecCCCCCCCCCCC-----CcceE
Q 044932 308 NIRVVLEIGSADLSFVASLLA-KE--VLTLTVGLKDDLVDLAQVALERGF---PAVVSPLGNRRLPFPSG-----VFDAI 376 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-~~--V~gmDIsp~D~seamlq~A~eRGL---~~i~~~~dt~~LPFpD~-----SFDlV 376 (689)
...+|||||||+|.++. |.. .. |+++|+++ .|++.+.++.- ...+...|...++|++. ..|.|
T Consensus 21 ~~~~VLEIG~G~G~lt~-l~~~~~~~v~avEid~-----~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~v 94 (252)
T 1qyr_A 21 KGQAMVEIGPGLAALTE-PVGERLDQLTVIELDR-----DLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 94 (252)
T ss_dssp TTCCEEEECCTTTTTHH-HHHTTCSCEEEECCCH-----HHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHHHHTSCEEE
T ss_pred CcCEEEEECCCCcHHHH-hhhCCCCeEEEEECCH-----HHHHHHHHHhccCCceEEEECchhhCCHHHhhcccCCceEE
Confidence 34689999999999988 653 35 99999876 57777776521 23455667777777532 23566
Q ss_pred Eec
Q 044932 377 HCD 379 (689)
Q Consensus 377 hcs 379 (689)
+++
T Consensus 95 vsN 97 (252)
T 1qyr_A 95 FGN 97 (252)
T ss_dssp EEE
T ss_pred EEC
Confidence 543
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0017 Score=67.37 Aligned_cols=137 Identities=12% Similarity=-0.004 Sum_probs=81.9
Q ss_pred CCCeEEEECCccchhHHHhh---------cCCeEEEEcCCcc-------------------------cHHHHHHHHHHcC
Q 044932 308 NIRVVLEIGSADLSFVASLL---------AKEVLTLTVGLKD-------------------------DLVDLAQVALERG 353 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La---------~~~V~gmDIsp~D-------------------------~seamlq~A~eRG 353 (689)
....||++|+..|..+..|+ +..|+++|..... ..+...+...+.|
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g 185 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD 185 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence 35689999999997554432 4569999964210 0011222223346
Q ss_pred CC---cEEecCCC-CCCC-CCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhc
Q 044932 354 FP---AVVSPLGN-RRLP-FPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASI 428 (689)
Q Consensus 354 L~---~i~~~~dt-~~LP-FpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l 428 (689)
+. ..+...++ +.|| +++.+||+|+.-... ...-..+|..+.+.|+|||++++.+.........++.++.+..
T Consensus 186 l~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~---y~~~~~~Le~~~p~L~pGGiIv~DD~~~~~G~~~Av~Ef~~~~ 262 (282)
T 2wk1_A 186 LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL---YESTWDTLTNLYPKVSVGGYVIVDDYMMCPPCKDAVDEYRAKF 262 (282)
T ss_dssp CCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS---HHHHHHHHHHHGGGEEEEEEEEESSCTTCHHHHHHHHHHHHHT
T ss_pred CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc---cccHHHHHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 52 22332222 2344 556799999965322 1123467889999999999999988742233446788888888
Q ss_pred ceeEEEeeccccCceeEEEEEeC
Q 044932 429 CWNILAHKTDEISEMGVKIYQKP 451 (689)
Q Consensus 429 ~W~~v~~~~~~~g~~~i~IwqKp 451 (689)
++......-+ .+.+.|+|+
T Consensus 263 ~i~~~i~~~~----~~~v~~rk~ 281 (282)
T 2wk1_A 263 DIADELITID----RDGVYWQRT 281 (282)
T ss_dssp TCCSCCEECS----SSCEEEECC
T ss_pred CCceEEEEec----CEEEEEEeC
Confidence 8765433221 235778875
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00013 Score=71.85 Aligned_cols=96 Identities=16% Similarity=0.159 Sum_probs=64.3
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhccc-cchhhccccCCCCCCCccchhhcccc-ccccccCC
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDRG-LVGIYHDWCESFGTYPRSYDLLHADH-LFSRLKSR 624 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~RG-Lig~yhdwce~f~typrTyDLlHa~~-lfs~~~~~ 624 (689)
..|||+++|.|.|+..|..... +|+-++- +..|...-.+. =|-+.+.=.+.++. +.+||+|.+.+ +|....+.
T Consensus 52 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~~ 127 (263)
T 3pfg_A 52 ASLLDVACGTGMHLRHLADSFG---TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAGQ 127 (263)
T ss_dssp CEEEEETCTTSHHHHHHTTTSS---EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCHH
T ss_pred CcEEEeCCcCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCCH
Confidence 5799999999999999987743 4555543 23333333321 01122222233444 89999999987 88776543
Q ss_pred cCCccceeeeeccccccCcEEEEe
Q 044932 625 CRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 625 c~~~~~illEmDRILRP~G~~iir 648 (689)
-. +..+|-++-|+|+|||.++|.
T Consensus 128 ~~-~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 128 AE-LDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp HH-HHHHHHHHHHTEEEEEEEEEC
T ss_pred HH-HHHHHHHHHHhcCCCcEEEEE
Confidence 34 256788999999999999995
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00022 Score=76.38 Aligned_cols=101 Identities=17% Similarity=0.105 Sum_probs=62.0
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc-CC-------CcEEecCCCCCCC-CCCCCcc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER-GF-------PAVVSPLGNRRLP-FPSGVFD 374 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR-GL-------~~i~~~~dt~~LP-FpD~SFD 374 (689)
.+.+|||++||.|+=+.+|+.. .|+++|+++.-. ..+....+| |+ ...+...|+..++ +..+.||
T Consensus 148 pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~--~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 148 PGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRI--ARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp TTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHH--HHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHH--HHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 4578999999999877666543 488888876311 222222222 32 2334455555543 3457999
Q ss_pred eEEe----ccc---c------ccccccH----------HHHHHHHHhccCCCcEEEEEc
Q 044932 375 AIHC----DGC---S------ITWHAHG----------GKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 375 lVhc----s~c---l------i~W~~d~----------~~aL~EI~RVLRPGG~fVIsd 410 (689)
.|++ +.. . +.|.... ..+|....+.|||||+++.++
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsT 284 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYST 284 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence 9984 321 0 1121111 246778889999999999986
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.28 E-value=6.4e-05 Score=71.52 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=83.2
Q ss_pred eEEeecCCcchhHHHHhccCC--ceEEEeccCCC-CCchhhhhc----ccc--chhhccccCCCCCCCccchhhcccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQK--IWVMNVVPVHA-PDTLPVIYD----RGL--VGIYHDWCESFGTYPRSYDLLHADHLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~--vWVMNvvp~~~-~~tL~vI~~----RGL--ig~yhdwce~f~typrTyDLlHa~~lf 618 (689)
..|+|+++|.|.++.+|.... -. .|+-++. +..+...-. .|+ |-+.+.=.+.++.-+.+||+|.+.++|
T Consensus 39 ~~vLDiG~G~G~~~~~l~~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 116 (219)
T 3dh0_A 39 MTVLDVGTGAGFYLPYLSKMVGEKG--KVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTF 116 (219)
T ss_dssp CEEEESSCTTCTTHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEESCG
T ss_pred CEEEEEecCCCHHHHHHHHHhCCCc--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeehhh
Confidence 479999999999999886531 11 2333332 222222222 222 112221123344456789999999999
Q ss_pred ccccCCcCCccceeeeeccccccCcEEEEeCch-------------hhHHHHHHHHhhcceeEEE-eecCCCceEEEEEe
Q 044932 619 SRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKV-------------EILDPLEGILRSLHWEIRM-TYAQDKEGILCAQK 684 (689)
Q Consensus 619 s~~~~~c~~~~~illEmDRILRP~G~~iirD~~-------------~~l~~v~~i~~~lrW~~~~-~~~~~~E~iL~~~K 684 (689)
....+ ...+|-++-|+|+|||.++|-+-. .....+..++....|+... .+......+++++|
T Consensus 117 ~~~~~----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k 192 (219)
T 3dh0_A 117 HELSE----PLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGKYCFGVYAMI 192 (219)
T ss_dssp GGCSS----HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred hhcCC----HHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeCCceEEEEEEe
Confidence 87743 256789999999999999997521 1367888888888887543 33344456677776
Q ss_pred c
Q 044932 685 T 685 (689)
Q Consensus 685 ~ 685 (689)
.
T Consensus 193 ~ 193 (219)
T 3dh0_A 193 V 193 (219)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00031 Score=66.58 Aligned_cols=115 Identities=17% Similarity=0.213 Sum_probs=75.7
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhc----cccchhhccccCCCCCCCccchhhcccccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYD----RGLVGIYHDWCESFGTYPRSYDLLHADHLFSRLK 622 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~----RGLig~yhdwce~f~typrTyDLlHa~~lfs~~~ 622 (689)
..|+|+++|.|.++.+|...+. .+|+-++. +..+...-. .|+-.+-.-.+..++..+.+||+|.++..+..
T Consensus 62 ~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~-- 137 (205)
T 3grz_A 62 LTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI-- 137 (205)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH--
T ss_pred CEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH--
Confidence 4799999999999999987653 13444443 223322222 24322222223334456799999999877753
Q ss_pred CCcCCccceeeeeccccccCcEEEEeC-chhhHHHHHHHHhhcceeEEEe
Q 044932 623 SRCRQPVSIVVEMDRILRPGGWAIVRD-KVEILDPLEGILRSLHWEIRMT 671 (689)
Q Consensus 623 ~~c~~~~~illEmDRILRP~G~~iirD-~~~~l~~v~~i~~~lrW~~~~~ 671 (689)
+..+|-++-|+|+|||.+++.+ ...-...+..++....++....
T Consensus 138 -----~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~ 182 (205)
T 3grz_A 138 -----LLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLK 182 (205)
T ss_dssp -----HHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEE
T ss_pred -----HHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEe
Confidence 2567889999999999999974 3345677777787777776443
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0002 Score=77.90 Aligned_cols=100 Identities=13% Similarity=-0.045 Sum_probs=59.8
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc------CCC-cEEecCCCCC-CCC-CCCCcceEE
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER------GFP-AVVSPLGNRR-LPF-PSGVFDAIH 377 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR------GL~-~i~~~~dt~~-LPF-pD~SFDlVh 377 (689)
..+|||+|||+|.++.+|+.. .|+++|+++. +++.|.++ |+. ..+...|... |+. ++++||+|+
T Consensus 94 g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~-----~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~ 168 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSKASQGIYIERNDE-----TAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIY 168 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTTCSEEEEEESCHH-----HHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEE
T ss_pred CCEEEEeCCCchHHHHHHHhcCCEEEEEECCHH-----HHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEE
Confidence 478999999999998888765 4999999874 44444432 553 3344455443 232 346899999
Q ss_pred ecc-------ccccccccHHHHHHHHHhccC-CCcEEEEEcCCC
Q 044932 378 CDG-------CSITWHAHGGKLLLEMNRILR-PSGYFILSTKHD 413 (689)
Q Consensus 378 cs~-------cli~W~~d~~~aL~EI~RVLR-PGG~fVIsdp~~ 413 (689)
+.- -.+.-..+...-+.++.++|. .+..++|..+|.
T Consensus 169 lDPPrr~~~~grv~~led~~P~l~~~~~~l~~~~~~~~vK~sP~ 212 (410)
T 3ll7_A 169 VDPARRSGADKRVYAIADCEPDLIPLATELLPFCSSILAKLSPM 212 (410)
T ss_dssp ECCEEC-----CCCCGGGEESCHHHHHHHHGGGSSEEEEEECTT
T ss_pred ECCCCcCCCCceEEehhhcCCCHHHHHHHHHhhCCcEEEEcCCC
Confidence 831 011111122234566666554 345666666553
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0012 Score=66.62 Aligned_cols=70 Identities=21% Similarity=0.285 Sum_probs=48.3
Q ss_pred HHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcC-CCcEEecCCCCCCC
Q 044932 292 YLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERG-FPAVVSPLGNRRLP 367 (689)
Q Consensus 292 Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRG-L~~i~~~~dt~~LP 367 (689)
+++.|.+.+. +. ...+|||+|||+|.++..|+.. .|+++|+++ .+++.+.++. ....+...|...++
T Consensus 19 i~~~iv~~~~-~~---~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~-----~~~~~~~~~~~~~v~~i~~D~~~~~ 89 (249)
T 3ftd_A 19 VLKKIAEELN-IE---EGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDR-----EMVENLKSIGDERLEVINEDASKFP 89 (249)
T ss_dssp HHHHHHHHTT-CC---TTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCH-----HHHHHHTTSCCTTEEEECSCTTTCC
T ss_pred HHHHHHHhcC-CC---CcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCH-----HHHHHHHhccCCCeEEEEcchhhCC
Confidence 3444555443 11 3568999999999999999865 489999875 5777776662 12345566777888
Q ss_pred CCC
Q 044932 368 FPS 370 (689)
Q Consensus 368 FpD 370 (689)
|++
T Consensus 90 ~~~ 92 (249)
T 3ftd_A 90 FCS 92 (249)
T ss_dssp GGG
T ss_pred hhH
Confidence 774
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0002 Score=65.54 Aligned_cols=126 Identities=13% Similarity=0.125 Sum_probs=81.6
Q ss_pred eeEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhcc--ccchhhccccCCCCCCCccchhhccccccccccC
Q 044932 547 IRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDR--GLVGIYHDWCESFGTYPRSYDLLHADHLFSRLKS 623 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~R--GLig~yhdwce~f~typrTyDLlHa~~lfs~~~~ 623 (689)
-..|+|+++|.|.++.+|.... . +|+-++-. ..+...-.+ .+--+..| ++.-+.+||+|.+..+|....+
T Consensus 18 ~~~vLDiG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d----~~~~~~~~D~v~~~~~l~~~~~ 90 (170)
T 3i9f_A 18 KGVIVDYGCGNGFYCKYLLEFA-T--KLYCIDINVIALKEVKEKFDSVITLSDP----KEIPDNSVDFILFANSFHDMDD 90 (170)
T ss_dssp CEEEEEETCTTCTTHHHHHTTE-E--EEEEECSCHHHHHHHHHHCTTSEEESSG----GGSCTTCEEEEEEESCSTTCSC
T ss_pred CCeEEEECCCCCHHHHHHHhhc-C--eEEEEeCCHHHHHHHHHhCCCcEEEeCC----CCCCCCceEEEEEccchhcccC
Confidence 4679999999999999998774 2 55555542 333333333 11111122 4445679999999999887643
Q ss_pred CcCCccceeeeeccccccCcEEEEeCchh-------------hHHHHHHHHhhcceeEEEe-ecCCCceEEEEEec
Q 044932 624 RCRQPVSIVVEMDRILRPGGWAIVRDKVE-------------ILDPLEGILRSLHWEIRMT-YAQDKEGILCAQKT 685 (689)
Q Consensus 624 ~c~~~~~illEmDRILRP~G~~iirD~~~-------------~l~~v~~i~~~lrW~~~~~-~~~~~E~iL~~~K~ 685 (689)
...+|-++-|+|+|||.++|.+-.. ....++.++. .|+..-. +.....-+|++.|+
T Consensus 91 ----~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~~~~~~l~~~~~ 160 (170)
T 3i9f_A 91 ----KQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNPTPYHFGLVLKRK 160 (170)
T ss_dssp ----HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECSSTTEEEEEEEEC
T ss_pred ----HHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCCCCceEEEEEecC
Confidence 2567889999999999999984211 2456677766 6665333 22334456666664
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00032 Score=73.07 Aligned_cols=104 Identities=12% Similarity=0.077 Sum_probs=58.4
Q ss_pred CCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecccc--
Q 044932 309 IRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCS-- 382 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cl-- 382 (689)
..+|||+|||+|+|+.+.+.. .|.++|+... .+...+.. ...+...+....++.-..++...||+|+|...-
T Consensus 91 ~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d-~~~~pi~~-~~~g~~ii~~~~~~dv~~l~~~~~DvVLSDmApns 168 (282)
T 3gcz_A 91 TGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQ-GHEKPIMR-TTLGWNLIRFKDKTDVFNMEVIPGDTLLCDIGESS 168 (282)
T ss_dssp CEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT-TSCCCCCC-CBTTGGGEEEECSCCGGGSCCCCCSEEEECCCCCC
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccC-cccccccc-ccCCCceEEeeCCcchhhcCCCCcCEEEecCccCC
Confidence 468999999999999877643 3677887642 11000000 001111222211212223567899999985321
Q ss_pred -ccccccHH--HHHHHHHhccCCC--cEEEEEcCCCc
Q 044932 383 -ITWHAHGG--KLLLEMNRILRPS--GYFILSTKHDS 414 (689)
Q Consensus 383 -i~W~~d~~--~aL~EI~RVLRPG--G~fVIsdp~~~ 414 (689)
+++.+... .+|.=+.++|+|| |.|++-.-..+
T Consensus 169 G~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~py 205 (282)
T 3gcz_A 169 PSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPY 205 (282)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCC
T ss_pred CChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCC
Confidence 12222211 2344456899999 99999876643
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00036 Score=71.84 Aligned_cols=58 Identities=17% Similarity=0.146 Sum_probs=41.6
Q ss_pred CCCeEEEECCccchhHHHhhc--CC----eEEEEcCCcccHHHHHHHHHHc-CCCcEEecCCCCCCCCCC
Q 044932 308 NIRVVLEIGSADLSFVASLLA--KE----VLTLTVGLKDDLVDLAQVALER-GFPAVVSPLGNRRLPFPS 370 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~--~~----V~gmDIsp~D~seamlq~A~eR-GL~~i~~~~dt~~LPFpD 370 (689)
...+|||||||+|.++..|+. .. |+++|+++ .|++.+.++ .....+...|...++|++
T Consensus 42 ~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~-----~~l~~a~~~~~~~v~~i~~D~~~~~~~~ 106 (279)
T 3uzu_A 42 RGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDR-----DLIGRLEQRFGELLELHAGDALTFDFGS 106 (279)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCH-----HHHHHHHHHHGGGEEEEESCGGGCCGGG
T ss_pred CcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCH-----HHHHHHHHhcCCCcEEEECChhcCChhH
Confidence 357899999999999988875 34 99999986 466666665 112334556677777763
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00024 Score=66.89 Aligned_cols=131 Identities=12% Similarity=0.066 Sum_probs=84.3
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhccc--cchhhccccCCCCCCCccchhhccccccccccCC
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDRG--LVGIYHDWCESFGTYPRSYDLLHADHLFSRLKSR 624 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~RG--Lig~yhdwce~f~typrTyDLlHa~~lfs~~~~~ 624 (689)
..|||+++|.|.|+..|..... +|+-++- +..+...-.+. +-=+..|. +.++.-+.+||+|.+.++|.....
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~~- 117 (203)
T 3h2b_A 43 GVILDVGSGTGRWTGHLASLGH---QIEGLEPATRLVELARQTHPSVTFHHGTI-TDLSDSPKRWAGLLAWYSLIHMGP- 117 (203)
T ss_dssp SCEEEETCTTCHHHHHHHHTTC---CEEEECCCHHHHHHHHHHCTTSEEECCCG-GGGGGSCCCEEEEEEESSSTTCCT-
T ss_pred CeEEEecCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCCCCeEEeCcc-cccccCCCCeEEEEehhhHhcCCH-
Confidence 3599999999999999987743 3444443 23333333331 11111222 334545689999999998887642
Q ss_pred cCCccceeeeeccccccCcEEEEeCch----------------hhHHHHHHHHhhcceeEEEeec--CCCceEEEEEe
Q 044932 625 CRQPVSIVVEMDRILRPGGWAIVRDKV----------------EILDPLEGILRSLHWEIRMTYA--QDKEGILCAQK 684 (689)
Q Consensus 625 c~~~~~illEmDRILRP~G~~iirD~~----------------~~l~~v~~i~~~lrW~~~~~~~--~~~E~iL~~~K 684 (689)
-+ +..+|-++-|+|+|||.++|.+-. .....++.++....|++..... ..+...|+..|
T Consensus 118 ~~-~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~p~~~l~~~~ 194 (203)
T 3h2b_A 118 GE-LPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPRFPHAYLTAEA 194 (203)
T ss_dssp TT-HHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTTSSEEEEEEEE
T ss_pred HH-HHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCCCcchhhhhhh
Confidence 23 256899999999999999997521 2368888999888898755422 22344444443
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=97.15 E-value=5.3e-05 Score=73.56 Aligned_cols=120 Identities=12% Similarity=0.092 Sum_probs=76.1
Q ss_pred CeeEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhcc----ccchhhccccCCCCCCCccchhhcccccccc
Q 044932 546 KIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDR----GLVGIYHDWCESFGTYPRSYDLLHADHLFSR 620 (689)
Q Consensus 546 ~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~R----GLig~yhdwce~f~typrTyDLlHa~~lfs~ 620 (689)
.-..|+|+++|.|.++..|..... -+|+-++- +..|...-.+ .-+-+.+.-.+.++.-+.+||+|.+.++|..
T Consensus 93 ~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 170 (254)
T 1xtp_A 93 GTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIY 170 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCCEEEEECCCcCHHHHHHHHhhc--CEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcchhhh
Confidence 346799999999999998876431 12333332 2233333222 1122222222335545689999999999887
Q ss_pred ccCCcCCccceeeeeccccccCcEEEEeCch----------------hhHHHHHHHHhhcceeEE
Q 044932 621 LKSRCRQPVSIVVEMDRILRPGGWAIVRDKV----------------EILDPLEGILRSLHWEIR 669 (689)
Q Consensus 621 ~~~~c~~~~~illEmDRILRP~G~~iirD~~----------------~~l~~v~~i~~~lrW~~~ 669 (689)
+.+. . +..+|-++-|+|+|||.++|.+.. .....++.++....++..
T Consensus 171 ~~~~-~-~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 233 (254)
T 1xtp_A 171 LTDA-D-FVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVV 233 (254)
T ss_dssp SCHH-H-HHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEE
T ss_pred CCHH-H-HHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEE
Confidence 6431 2 256789999999999999998731 123677777777777654
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00029 Score=64.76 Aligned_cols=118 Identities=12% Similarity=0.112 Sum_probs=74.0
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhccc-cchhhc-cccCCCCCCCccchhhccc-cccccccC
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDRG-LVGIYH-DWCESFGTYPRSYDLLHAD-HLFSRLKS 623 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~RG-Lig~yh-dwce~f~typrTyDLlHa~-~lfs~~~~ 623 (689)
..|+|+++|.|.++..|..... +|+-++.. ..+...-.+. =+-+++ |.. .++.-+.+||+|.+. .++.....
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~-~~~~~~~~~D~i~~~~~~~~~~~~ 123 (195)
T 3cgg_A 48 AKILDAGCGQGRIGGYLSKQGH---DVLGTDLDPILIDYAKQDFPEARWVVGDLS-VDQISETDFDLIVSAGNVMGFLAE 123 (195)
T ss_dssp CEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSEEEECCTT-TSCCCCCCEEEEEECCCCGGGSCH
T ss_pred CeEEEECCCCCHHHHHHHHCCC---cEEEEcCCHHHHHHHHHhCCCCcEEEcccc-cCCCCCCceeEEEECCcHHhhcCh
Confidence 4799999999999999987653 34444432 2222222211 022222 222 233335799999998 56665422
Q ss_pred CcCCccceeeeeccccccCcEEEEeCchh---hHHHHHHHHhhcceeEEEe
Q 044932 624 RCRQPVSIVVEMDRILRPGGWAIVRDKVE---ILDPLEGILRSLHWEIRMT 671 (689)
Q Consensus 624 ~c~~~~~illEmDRILRP~G~~iirD~~~---~l~~v~~i~~~lrW~~~~~ 671 (689)
. . ...+|-++-|+|+|||.++|..... ....+..++....+++.-.
T Consensus 124 ~-~-~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 172 (195)
T 3cgg_A 124 D-G-REPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENA 172 (195)
T ss_dssp H-H-HHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEE
T ss_pred H-H-HHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeee
Confidence 1 2 2467889999999999999964332 4677788887777876543
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00011 Score=69.79 Aligned_cols=100 Identities=15% Similarity=0.240 Sum_probs=68.1
Q ss_pred CCeeEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhcc----ccchhhccccCCCCCCCccchhhccccccc
Q 044932 545 SKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDR----GLVGIYHDWCESFGTYPRSYDLLHADHLFS 619 (689)
Q Consensus 545 ~~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~R----GLig~yhdwce~f~typrTyDLlHa~~lfs 619 (689)
..-..|+|+++|.|.++..|.... .+|+-++-. ..+...-.+ +-|-+++.=.+.++ .+.+||+|.+.++|.
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~ 125 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAEVLY 125 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEESCGG
T ss_pred CCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEccHHH
Confidence 456789999999999999998763 355555542 333322222 22223332233344 478999999999998
Q ss_pred cccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 620 RLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 620 ~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
...+.-. +..+|-++-|+|+|||.++|..
T Consensus 126 ~~~~~~~-~~~~l~~~~~~L~pgG~l~~~~ 154 (216)
T 3ofk_A 126 YLEDMTQ-MRTAIDNMVKMLAPGGHLVFGS 154 (216)
T ss_dssp GSSSHHH-HHHHHHHHHHTEEEEEEEEEEE
T ss_pred hCCCHHH-HHHHHHHHHHHcCCCCEEEEEe
Confidence 7765444 2457899999999999999953
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0012 Score=74.22 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=74.2
Q ss_pred CCCeEEEECCccchhHHHhhc-------CCeEEEEcCCcccHHHHHHHHH----HcCCC---cEEecCCCCCC--C-CCC
Q 044932 308 NIRVVLEIGSADLSFVASLLA-------KEVLTLTVGLKDDLVDLAQVAL----ERGFP---AVVSPLGNRRL--P-FPS 370 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-------~~V~gmDIsp~D~seamlq~A~----eRGL~---~i~~~~dt~~L--P-FpD 370 (689)
...+|||.+||+|+|...++. ..++|+++++. +..+|+ -+|+. ..+...|+... | ++.
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~-----~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~ 295 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTS-----TYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEP 295 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHH-----HHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSC
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHH-----HHHHHHHHHHHcCCCcCccceEecceeccccccccc
Confidence 356899999999998655432 35899999874 333333 24663 23445565544 4 457
Q ss_pred CCcceEEecc-ccccccc---------------------cHHHHHHHHHhccC-CCcEEEEEcCCCchh---HHHHHHHH
Q 044932 371 GVFDAIHCDG-CSITWHA---------------------HGGKLLLEMNRILR-PSGYFILSTKHDSIE---EEEALTTL 424 (689)
Q Consensus 371 ~SFDlVhcs~-cli~W~~---------------------d~~~aL~EI~RVLR-PGG~fVIsdp~~~le---~~~~ie~L 424 (689)
..||+|++.- ....|.. ..-.++..+.+.|+ |||++++..|...+. ....+.+.
T Consensus 296 ~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~ 375 (542)
T 3lkd_A 296 TNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKA 375 (542)
T ss_dssp CCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHHHHHHHH
T ss_pred ccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCCchhHHHHHH
Confidence 8999999751 0011210 01247889999999 999999999887652 12345555
Q ss_pred HHhcce
Q 044932 425 TASICW 430 (689)
Q Consensus 425 a~~l~W 430 (689)
+-.-++
T Consensus 376 Lle~~~ 381 (542)
T 3lkd_A 376 LLEEGA 381 (542)
T ss_dssp HHHTTC
T ss_pred HHhCCc
Confidence 444344
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=97.13 E-value=7.5e-05 Score=71.45 Aligned_cols=93 Identities=20% Similarity=0.355 Sum_probs=61.3
Q ss_pred EEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhccc--cchhhccccCCCCCCCccchhhccccccccccCCc
Q 044932 549 NVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDRG--LVGIYHDWCESFGTYPRSYDLLHADHLFSRLKSRC 625 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~RG--Lig~yhdwce~f~typrTyDLlHa~~lfs~~~~~c 625 (689)
.|+|+++|.|.++..|..... +|+-++.. ..+...-.+- -|-+++.-.+.+ ..+.+||+|++.++|....+.
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~~~- 119 (250)
T 2p7i_A 45 NLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHIDDP- 119 (250)
T ss_dssp CEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCSSH-
T ss_pred cEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhcCH-
Confidence 499999999999999987532 33333322 2222222221 111222222223 357899999999999877542
Q ss_pred CCccceeeeec-cccccCcEEEEeC
Q 044932 626 RQPVSIVVEMD-RILRPGGWAIVRD 649 (689)
Q Consensus 626 ~~~~~illEmD-RILRP~G~~iirD 649 (689)
..+|-|+- |+|+|||+++|.+
T Consensus 120 ---~~~l~~~~~~~LkpgG~l~i~~ 141 (250)
T 2p7i_A 120 ---VALLKRINDDWLAEGGRLFLVC 141 (250)
T ss_dssp ---HHHHHHHHHTTEEEEEEEEEEE
T ss_pred ---HHHHHHHHHHhcCCCCEEEEEc
Confidence 45789999 9999999999975
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00015 Score=72.64 Aligned_cols=95 Identities=19% Similarity=0.272 Sum_probs=64.6
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCCC-Cchhhhh----cccc---chhhccccCCCCCCCccchhhcccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-DTLPVIY----DRGL---VGIYHDWCESFGTYPRSYDLLHADHLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-~tL~vI~----~RGL---ig~yhdwce~f~typrTyDLlHa~~lf 618 (689)
..|+|+++|.|.++..|... +. +|+-++-. ..|...- ..|+ |-+.+.=.+.++.-+.+||+|.+.++|
T Consensus 84 ~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 160 (297)
T 2o57_A 84 AKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAF 160 (297)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCG
T ss_pred CEEEEeCCCCCHHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecchh
Confidence 47999999999999998765 43 34444432 3332222 2343 222222223445446899999999999
Q ss_pred ccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 619 SRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 619 s~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
....+ ...+|-+|-|+|+|||.++|.+
T Consensus 161 ~~~~~----~~~~l~~~~~~LkpgG~l~~~~ 187 (297)
T 2o57_A 161 LHSPD----KLKVFQECARVLKPRGVMAITD 187 (297)
T ss_dssp GGCSC----HHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcCC----HHHHHHHHHHHcCCCeEEEEEE
Confidence 88765 2567999999999999999985
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=7.8e-05 Score=73.74 Aligned_cols=96 Identities=17% Similarity=0.170 Sum_probs=64.8
Q ss_pred eeEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhh----hcccc---chhhccccCCCCCCCccchhhcccccc
Q 044932 547 IRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVI----YDRGL---VGIYHDWCESFGTYPRSYDLLHADHLF 618 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI----~~RGL---ig~yhdwce~f~typrTyDLlHa~~lf 618 (689)
-..|+|+++|.|.++..|...+-. +|+-++- +..+... -..|+ |-+.+.=.+.++.-+.+||+|++.++|
T Consensus 47 ~~~vLDiGcG~G~~~~~la~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~ 124 (267)
T 3kkz_A 47 KSLIADIGCGTGGQTMVLAGHVTG--QVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAI 124 (267)
T ss_dssp TCEEEEETCTTCHHHHHHHTTCSS--EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSCG
T ss_pred CCEEEEeCCCCCHHHHHHHhccCC--EEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCCc
Confidence 357999999999999999876421 2333332 2333222 22333 222222234555556899999999998
Q ss_pred ccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 619 SRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 619 s~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
... + ...+|-++-|+|+|||+++|.+
T Consensus 125 ~~~----~-~~~~l~~~~~~LkpgG~l~~~~ 150 (267)
T 3kkz_A 125 YNI----G-FERGLNEWRKYLKKGGYLAVSE 150 (267)
T ss_dssp GGT----C-HHHHHHHHGGGEEEEEEEEEEE
T ss_pred eec----C-HHHHHHHHHHHcCCCCEEEEEE
Confidence 776 3 3668999999999999999975
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00015 Score=67.48 Aligned_cols=114 Identities=17% Similarity=0.226 Sum_probs=72.5
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhh----cccc--chhh-ccccCCCCCCCccchhhccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIY----DRGL--VGIY-HDWCESFGTYPRSYDLLHADHLFS 619 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~----~RGL--ig~y-hdwce~f~typrTyDLlHa~~lfs 619 (689)
.+|+|+++|.|.++..|..... +|+-++.. ..+...- ..|+ |-+. .|.. .++. +.+||+|.+.++|.
T Consensus 34 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~-~~~~-~~~~D~v~~~~~l~ 108 (199)
T 2xvm_A 34 GKTLDLGCGNGRNSLYLAANGY---DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLN-NLTF-DRQYDFILSTVVLM 108 (199)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGG-GCCC-CCCEEEEEEESCGG
T ss_pred CeEEEEcCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchh-hCCC-CCCceEEEEcchhh
Confidence 4899999999999999987653 34444432 2222221 2232 2222 2333 3444 89999999999887
Q ss_pred cccCCcCCccceeeeeccccccCcEEEEeCch--------------hhHHHHHHHHhhcceeEEE
Q 044932 620 RLKSRCRQPVSIVVEMDRILRPGGWAIVRDKV--------------EILDPLEGILRSLHWEIRM 670 (689)
Q Consensus 620 ~~~~~c~~~~~illEmDRILRP~G~~iirD~~--------------~~l~~v~~i~~~lrW~~~~ 670 (689)
.... -. ...+|-++-|+|+|||.++|-+.. --...++.++.. |+...
T Consensus 109 ~~~~-~~-~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~ 169 (199)
T 2xvm_A 109 FLEA-KT-IPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVK 169 (199)
T ss_dssp GSCG-GG-HHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEE
T ss_pred hCCH-HH-HHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEE
Confidence 6542 22 256889999999999997764311 134567777766 76643
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=4.8e-05 Score=74.15 Aligned_cols=93 Identities=17% Similarity=0.226 Sum_probs=64.2
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhhh----hcccc---chhh-ccccCCCCCCCccchhhccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPVI----YDRGL---VGIY-HDWCESFGTYPRSYDLLHADHL 617 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~vI----~~RGL---ig~y-hdwce~f~typrTyDLlHa~~l 617 (689)
..|+|+++|.|.++..|... +. .|+-++- +..+... -..|+ |-+. .|+ +.++.-+.+||+|++.++
T Consensus 48 ~~vLDiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~ 123 (257)
T 3f4k_A 48 AKIADIGCGTGGQTLFLADYVKG---QITGIDLFPDFIEIFNENAVKANCADRVKGITGSM-DNLPFQNEELDLIWSEGA 123 (257)
T ss_dssp CEEEEETCTTSHHHHHHHHHCCS---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCSSCTTCEEEEEEESC
T ss_pred CeEEEeCCCCCHHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh-hhCCCCCCCEEEEEecCh
Confidence 37999999999999998764 22 3444443 2333322 23343 2222 333 555655689999999999
Q ss_pred cccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 618 FSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 618 fs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
|... + ...+|-++-|+|+|||+++|.+
T Consensus 124 l~~~----~-~~~~l~~~~~~L~pgG~l~~~~ 150 (257)
T 3f4k_A 124 IYNI----G-FERGMNEWSKYLKKGGFIAVSE 150 (257)
T ss_dssp SCCC----C-HHHHHHHHHTTEEEEEEEEEEE
T ss_pred Hhhc----C-HHHHHHHHHHHcCCCcEEEEEE
Confidence 8776 3 3678999999999999999986
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00019 Score=72.93 Aligned_cols=72 Identities=14% Similarity=-0.047 Sum_probs=46.0
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccH--HHHHHHHHHc----CCC--cEEecCCCCC-CC-CCC--CCcc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDL--VDLAQVALER----GFP--AVVSPLGNRR-LP-FPS--GVFD 374 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~s--eamlq~A~eR----GL~--~i~~~~dt~~-LP-FpD--~SFD 374 (689)
..+|||+|||+|.++..|+.. .|+++|+++.... ..+++.|.++ ++. ..+...+... ++ +++ ++||
T Consensus 84 ~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~fD 163 (258)
T 2r6z_A 84 HPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGKPD 163 (258)
T ss_dssp CCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCCCS
T ss_pred cCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCCcc
Confidence 468999999999998888754 5999999872110 1345555432 321 3344445433 23 555 7999
Q ss_pred eEEecc
Q 044932 375 AIHCDG 380 (689)
Q Consensus 375 lVhcs~ 380 (689)
+|++..
T Consensus 164 ~V~~dP 169 (258)
T 2r6z_A 164 IVYLDP 169 (258)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999853
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00013 Score=71.24 Aligned_cols=105 Identities=19% Similarity=0.228 Sum_probs=69.4
Q ss_pred hhcccCCCCCCeeEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhh----cccc--chhhccccCCCCCCCcc
Q 044932 536 YLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIY----DRGL--VGIYHDWCESFGTYPRS 608 (689)
Q Consensus 536 y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~----~RGL--ig~yhdwce~f~typrT 608 (689)
++..+.+.. -..|+|+++|.|.++.+|....- +|+-++.. ..+...- .+|+ |-+.+.=.+.++.-+.+
T Consensus 13 ~~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 87 (239)
T 1xxl_A 13 MIKTAECRA--EHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS 87 (239)
T ss_dssp HHHHHTCCT--TCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred HHHHhCcCC--CCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCc
Confidence 444445543 35799999999999999976532 44444432 3333222 2232 22233333556655689
Q ss_pred chhhccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 609 YDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 609 yDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
||+|.+.+++..+.+ ...+|-+|-|+|+|||+++|-+
T Consensus 88 fD~v~~~~~l~~~~~----~~~~l~~~~~~LkpgG~l~~~~ 124 (239)
T 1xxl_A 88 FDIITCRYAAHHFSD----VRKAVREVARVLKQDGRFLLVD 124 (239)
T ss_dssp EEEEEEESCGGGCSC----HHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEEECCchhhccC----HHHHHHHHHHHcCCCcEEEEEE
Confidence 999999988877643 2567999999999999999964
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.07 E-value=5.2e-05 Score=73.80 Aligned_cols=95 Identities=15% Similarity=0.226 Sum_probs=63.0
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhccccchhhc-cccCCC-CCCCccchhhccccccccccCC
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDRGLVGIYH-DWCESF-GTYPRSYDLLHADHLFSRLKSR 624 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~RGLig~yh-dwce~f-~typrTyDLlHa~~lfs~~~~~ 624 (689)
..|||+++|.|.|+.+|..... +|+-++- +..+...-.+ +-+.+ |..+-+ +.-+.+||+|.+.++|....+.
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~~ 117 (240)
T 3dli_A 43 RRVLDIGCGRGEFLELCKEEGI---ESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPE 117 (240)
T ss_dssp SCEEEETCTTTHHHHHHHHHTC---CEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCGG
T ss_pred CeEEEEeCCCCHHHHHHHhCCC---cEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhCCcH
Confidence 5699999999999999987643 2333333 2334443333 22221 222211 2245899999999999877532
Q ss_pred cCCccceeeeeccccccCcEEEEeC
Q 044932 625 CRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 625 c~~~~~illEmDRILRP~G~~iirD 649 (689)
. +..+|-+|-|+|+|||+++|..
T Consensus 118 -~-~~~~l~~~~~~LkpgG~l~~~~ 140 (240)
T 3dli_A 118 -R-LFELLSLCYSKMKYSSYIVIES 140 (240)
T ss_dssp -G-HHHHHHHHHHHBCTTCCEEEEE
T ss_pred -H-HHHHHHHHHHHcCCCcEEEEEe
Confidence 2 2467999999999999999974
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0001 Score=67.82 Aligned_cols=129 Identities=15% Similarity=0.178 Sum_probs=76.5
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhcc----cc----c-hhhccccCCCCCCCccchhhccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDR----GL----V-GIYHDWCESFGTYPRSYDLLHADHL 617 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~R----GL----i-g~yhdwce~f~typrTyDLlHa~~l 617 (689)
..|+|+++|.|.++.+|..... +|+-++. +..+...-.+ |+ + -+..|+.+.++ +.+||+|.++..
T Consensus 54 ~~vLdiG~G~G~~~~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~ 128 (194)
T 1dus_A 54 DDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--DRKYNKIITNPP 128 (194)
T ss_dssp CEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--TSCEEEEEECCC
T ss_pred CeEEEeCCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc--cCCceEEEECCC
Confidence 4799999999999998887632 3443332 2222222221 32 1 12234445433 679999999877
Q ss_pred cccccCCcCCccceeeeeccccccCcEEEEeCchh-hHHHHHHHHhhcceeEEEeecCCCceEEEEEe
Q 044932 618 FSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVE-ILDPLEGILRSLHWEIRMTYAQDKEGILCAQK 684 (689)
Q Consensus 618 fs~~~~~c~~~~~illEmDRILRP~G~~iirD~~~-~l~~v~~i~~~lrW~~~~~~~~~~E~iL~~~K 684 (689)
|... .-. +..+|-++-|+|+|||.+++-+... ....+...+...-+++.+....+.-.++.++|
T Consensus 129 ~~~~--~~~-~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 129 IRAG--KEV-LHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp STTC--HHH-HHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEETTEEEEEEEC
T ss_pred cccc--hhH-HHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHHhcceEEEecCCcEEEEEEee
Confidence 6531 112 3567889999999999999875443 44445555544434555443333345555554
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00017 Score=73.27 Aligned_cols=106 Identities=10% Similarity=0.103 Sum_probs=66.8
Q ss_pred hcccCCCCCCeeEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhhhhc----cccchhhccccCCCCCCCccch
Q 044932 537 LTGLGIDWSKIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPVIYD----RGLVGIYHDWCESFGTYPRSYD 610 (689)
Q Consensus 537 ~~~l~~~~~~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~vI~~----RGLig~yhdwce~f~typrTyD 610 (689)
+..+.+..+ ..|+|+++|.|+++..|... +. +|+-++- +..+...-. .|+-....-.+..+..+|.+||
T Consensus 83 ~~~~~~~~~--~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD 157 (318)
T 2fk8_A 83 LDKLDLKPG--MTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVD 157 (318)
T ss_dssp HTTSCCCTT--CEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCS
T ss_pred HHhcCCCCc--CEEEEEcccchHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcC
Confidence 334455443 47999999999999988765 43 3444433 233333322 2442211111222333468999
Q ss_pred hhccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 611 LLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 611 LlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
+|.+.++|..... -. ...+|-++-|+|+|||.++|.+
T Consensus 158 ~v~~~~~l~~~~~-~~-~~~~l~~~~~~LkpgG~l~~~~ 194 (318)
T 2fk8_A 158 RIVSIEAFEHFGH-EN-YDDFFKRCFNIMPADGRMTVQS 194 (318)
T ss_dssp EEEEESCGGGTCG-GG-HHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEEeChHHhcCH-HH-HHHHHHHHHHhcCCCcEEEEEE
Confidence 9999999886643 22 2567899999999999999875
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00032 Score=66.96 Aligned_cols=135 Identities=13% Similarity=0.141 Sum_probs=83.7
Q ss_pred eeEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhcc----cc-------chhhc-cccCCCCCCCccchhhc
Q 044932 547 IRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDR----GL-------VGIYH-DWCESFGTYPRSYDLLH 613 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~R----GL-------ig~yh-dwce~f~typrTyDLlH 613 (689)
-..|+|+++|.|.|+.+|.... ...+|+-++-. ..+...-.+ |+ |-+++ |. +.++..+.+||+|-
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 30 AKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSL-VYRDKRFSGYDAAT 107 (219)
T ss_dssp CCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCS-SSCCGGGTTCSEEE
T ss_pred CCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcc-cccccccCCCCEEE
Confidence 3579999999999999998643 11234434332 223222221 21 22222 33 33344457999999
Q ss_pred cccccccccCCcCCccceeeeeccccccCcEEEEeCchhh----------------------HHHH----HHHHhhccee
Q 044932 614 ADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVEI----------------------LDPL----EGILRSLHWE 667 (689)
Q Consensus 614 a~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~~~----------------------l~~v----~~i~~~lrW~ 667 (689)
+..+|....+. . +..+|-++-|+|+|||++++-...+. ...+ +.++....++
T Consensus 108 ~~~~l~~~~~~-~-~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~ 185 (219)
T 3jwg_A 108 VIEVIEHLDEN-R-LQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYS 185 (219)
T ss_dssp EESCGGGCCHH-H-HHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEE
T ss_pred EHHHHHhCCHH-H-HHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcE
Confidence 99999877432 1 14578899999999998887644332 2233 3778777888
Q ss_pred EEEee---c----CCCceEEEEEec
Q 044932 668 IRMTY---A----QDKEGILCAQKT 685 (689)
Q Consensus 668 ~~~~~---~----~~~E~iL~~~K~ 685 (689)
+.... . ...-+|-|++|+
T Consensus 186 v~~~~~g~~~~~~g~~~qi~~~~~~ 210 (219)
T 3jwg_A 186 VRFLQIGEIDDEFGSPTQMGVFTLG 210 (219)
T ss_dssp EEEEEESCCCTTSCCSEEEEEEEEC
T ss_pred EEEEecCCccccCCCCeEEEEEecc
Confidence 77652 1 125689999886
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00047 Score=64.98 Aligned_cols=96 Identities=18% Similarity=0.258 Sum_probs=64.2
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhccccchh---hccccCCCCCCCccchhhccccccccccC
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDRGLVGI---YHDWCESFGTYPRSYDLLHADHLFSRLKS 623 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~RGLig~---yhdwce~f~typrTyDLlHa~~lfs~~~~ 623 (689)
..|+|+++|.|.++.+|..... +|+-++- +..+...-.+|+-.+ ..|..+ + .-+.+||+|.+.++|....+
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~-~-~~~~~~D~v~~~~~l~~~~~ 122 (218)
T 3ou2_A 48 GDVLELASGTGYWTRHLSGLAD---RVTALDGSAEMIAEAGRHGLDNVEFRQQDLFD-W-TPDRQWDAVFFAHWLAHVPD 122 (218)
T ss_dssp SEEEEESCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHGGGCCTTEEEEECCTTS-C-CCSSCEEEEEEESCGGGSCH
T ss_pred CeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHhcCCCCeEEEeccccc-C-CCCCceeEEEEechhhcCCH
Confidence 3899999999999999987643 3444432 234444444443221 122222 2 35689999999998887654
Q ss_pred CcCCccceeeeeccccccCcEEEEeCc
Q 044932 624 RCRQPVSIVVEMDRILRPGGWAIVRDK 650 (689)
Q Consensus 624 ~c~~~~~illEmDRILRP~G~~iirD~ 650 (689)
. . +..+|-++-|+|+|||.++|.+.
T Consensus 123 ~-~-~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 123 D-R-FEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp H-H-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred H-H-HHHHHHHHHHHcCCCeEEEEEeC
Confidence 2 1 14578999999999999998853
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00014 Score=71.64 Aligned_cols=103 Identities=23% Similarity=0.258 Sum_probs=65.3
Q ss_pred cccCCCCCCeeEEeecCCcchhHHHHhccC-CceEEEeccCCCC-Cchhhhh----cccc---chhhccccCCCCCCCcc
Q 044932 538 TGLGIDWSKIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-DTLPVIY----DRGL---VGIYHDWCESFGTYPRS 608 (689)
Q Consensus 538 ~~l~~~~~~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-~tL~vI~----~RGL---ig~yhdwce~f~typrT 608 (689)
..+.+..+ ..|+|+++|.|.++..|... .. +|+-++-. ..+...- ..|+ |-+.+.--+.++.-+.+
T Consensus 55 ~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 129 (273)
T 3bus_A 55 ALLDVRSG--DRVLDVGCGIGKPAVRLATARDV---RVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDAS 129 (273)
T ss_dssp HHSCCCTT--CEEEEESCTTSHHHHHHHHHSCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTC
T ss_pred HhcCCCCC--CEEEEeCCCCCHHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCC
Confidence 33444433 47999999999999988753 32 33333322 2222222 2243 22222212234444589
Q ss_pred chhhccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 609 YDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 609 yDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
||+|.+.++|....+. ..+|-++-|+|+|||.++|.+
T Consensus 130 fD~v~~~~~l~~~~~~----~~~l~~~~~~L~pgG~l~i~~ 166 (273)
T 3bus_A 130 FDAVWALESLHHMPDR----GRALREMARVLRPGGTVAIAD 166 (273)
T ss_dssp EEEEEEESCTTTSSCH----HHHHHHHHTTEEEEEEEEEEE
T ss_pred ccEEEEechhhhCCCH----HHHHHHHHHHcCCCeEEEEEE
Confidence 9999999998876443 457899999999999999976
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00014 Score=73.63 Aligned_cols=93 Identities=19% Similarity=0.108 Sum_probs=62.1
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-CchhhhhccccchhhccccCCCCCCCccchhhccccccccccCCcC
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDRGLVGIYHDWCESFGTYPRSYDLLHADHLFSRLKSRCR 626 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~RGLig~yhdwce~f~typrTyDLlHa~~lfs~~~~~c~ 626 (689)
..|+|.++|.|.++..|....- +|+-++-. .-|...-.+.=|-..+.=.|.++.-+.+||||.+...| +|. +
T Consensus 41 ~~vLDvGcGtG~~~~~l~~~~~---~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~-h~~---~ 113 (257)
T 4hg2_A 41 GDALDCGCGSGQASLGLAEFFE---RVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAM-HWF---D 113 (257)
T ss_dssp SEEEEESCTTTTTHHHHHTTCS---EEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCC-TTC---C
T ss_pred CCEEEEcCCCCHHHHHHHHhCC---EEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeeh-hHh---h
Confidence 3699999999999999987642 34444321 11211111222233333356677778999999998888 443 3
Q ss_pred CccceeeeeccccccCcEEEEe
Q 044932 627 QPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 627 ~~~~illEmDRILRP~G~~iir 648 (689)
....+-|+-|||||||.+++-
T Consensus 114 -~~~~~~e~~rvLkpgG~l~~~ 134 (257)
T 4hg2_A 114 -LDRFWAELRRVARPGAVFAAV 134 (257)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEE
T ss_pred -HHHHHHHHHHHcCCCCEEEEE
Confidence 255789999999999998764
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00014 Score=68.92 Aligned_cols=95 Identities=12% Similarity=0.153 Sum_probs=63.3
Q ss_pred eeEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhccccchhh-ccccCC-CCCCCccchhhccccccccccC
Q 044932 547 IRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDRGLVGIY-HDWCES-FGTYPRSYDLLHADHLFSRLKS 623 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~RGLig~y-hdwce~-f~typrTyDLlHa~~lfs~~~~ 623 (689)
-.+|+|+++|.|.++.+|...+ .+|+-++-. ..+...-.+. .-++ .|..+. .+.-+.+||+|.+.++|....+
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~ 108 (230)
T 3cc8_A 33 WKEVLDIGCSSGALGAAIKENG---TRVSGIEAFPEAAEQAKEKL-DHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFD 108 (230)
T ss_dssp CSEEEEETCTTSHHHHHHHTTT---CEEEEEESSHHHHHHHHTTS-SEEEESCTTTCCCCSCTTCEEEEEEESCGGGSSC
T ss_pred CCcEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhC-CcEEEcchhhcCCCCCCCccCEEEECChhhhcCC
Confidence 4589999999999999998875 244444432 2333332222 1111 233321 2323489999999998877653
Q ss_pred CcCCccceeeeeccccccCcEEEEeC
Q 044932 624 RCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 624 ~c~~~~~illEmDRILRP~G~~iirD 649 (689)
. ..+|-++-|+|+|||.+++..
T Consensus 109 ~----~~~l~~~~~~L~~gG~l~~~~ 130 (230)
T 3cc8_A 109 P----WAVIEKVKPYIKQNGVILASI 130 (230)
T ss_dssp H----HHHHHHTGGGEEEEEEEEEEE
T ss_pred H----HHHHHHHHHHcCCCCEEEEEe
Confidence 2 467899999999999999964
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0037 Score=73.49 Aligned_cols=143 Identities=8% Similarity=-0.002 Sum_probs=79.6
Q ss_pred CCeEEEECCccchhHHHhhcC-------CeEEEEcCCcccHHHHHHHHHH-----cCCCc-EEecCCCCCC-CCCCCCcc
Q 044932 309 IRVVLEIGSADLSFVASLLAK-------EVLTLTVGLKDDLVDLAQVALE-----RGFPA-VVSPLGNRRL-PFPSGVFD 374 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~-------~V~gmDIsp~D~seamlq~A~e-----RGL~~-i~~~~dt~~L-PFpD~SFD 374 (689)
..+|||.|||+|.|+..++.. .++|+|+++.....+....... .++.. .+...+...+ +++...||
T Consensus 322 g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kFD 401 (878)
T 3s1s_A 322 DEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANVS 401 (878)
T ss_dssp TCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTEE
T ss_pred CCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCCC
Confidence 568999999999988776532 4899999985221110111111 23322 2222222221 23467899
Q ss_pred eEEecccccc-ccc--------------------------c-HHHHHHHHHhccCCCcEEEEEcCCCchh----HHHHHH
Q 044932 375 AIHCDGCSIT-WHA--------------------------H-GGKLLLEMNRILRPSGYFILSTKHDSIE----EEEALT 422 (689)
Q Consensus 375 lVhcs~cli~-W~~--------------------------d-~~~aL~EI~RVLRPGG~fVIsdp~~~le----~~~~ie 422 (689)
+|++.-=... +.. + ...++..+.+.|+|||++++..|...+. ....+.
T Consensus 402 VVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg~~~kkLR 481 (878)
T 3s1s_A 402 VVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQGNESKAFR 481 (878)
T ss_dssp EEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCSHHHHHHH
T ss_pred EEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCChHHHHHH
Confidence 9998521100 000 0 1235677899999999999999987663 234455
Q ss_pred HH-HHhcceeEEEeecc--cc----CceeEEEEEeC
Q 044932 423 TL-TASICWNILAHKTD--EI----SEMGVKIYQKP 451 (689)
Q Consensus 423 ~L-a~~l~W~~v~~~~~--~~----g~~~i~IwqKp 451 (689)
+. ++......+..-.. .+ ....|++++|.
T Consensus 482 k~LLe~~~I~aIIdLP~~~~F~~asv~T~ILIlrK~ 517 (878)
T 3s1s_A 482 EFLVGNFGLEHIFLYPREGLFEEVIKDTVVFVGRKG 517 (878)
T ss_dssp HHHTTTTCEEEEEECCBCCSSCSCBCCEEEEEEETT
T ss_pred HHHHhCCCeEEEEECCCccccCCCCCcEEEEEEEcC
Confidence 54 44444444332222 11 12347777775
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=97.01 E-value=7.9e-05 Score=72.59 Aligned_cols=93 Identities=14% Similarity=0.139 Sum_probs=60.9
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhhh----hcccc---chhh-ccccCCCCCCCccchhhccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPVI----YDRGL---VGIY-HDWCESFGTYPRSYDLLHADHL 617 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~vI----~~RGL---ig~y-hdwce~f~typrTyDLlHa~~l 617 (689)
..|+|+++|.|.++.+|... +. +|+-++. +..|... ...|+ |-+. .|+ +.++. +.+||+|.+.++
T Consensus 38 ~~VLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~-~~~~~-~~~fD~V~~~~~ 112 (256)
T 1nkv_A 38 TRILDLGSGSGEMLCTWARDHGI---TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA-AGYVA-NEKCDVAACVGA 112 (256)
T ss_dssp CEEEEETCTTCHHHHHHHHHTCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC-TTCCC-SSCEEEEEEESC
T ss_pred CEEEEECCCCCHHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECCh-HhCCc-CCCCCEEEECCC
Confidence 47999999999999888753 32 2333332 2223222 22343 2222 233 33443 789999999888
Q ss_pred cccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 618 FSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 618 fs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
+-...+ ...+|-||-|+|||||.++|.+
T Consensus 113 ~~~~~~----~~~~l~~~~r~LkpgG~l~~~~ 140 (256)
T 1nkv_A 113 TWIAGG----FAGAEELLAQSLKPGGIMLIGE 140 (256)
T ss_dssp GGGTSS----SHHHHHHHTTSEEEEEEEEEEE
T ss_pred hHhcCC----HHHHHHHHHHHcCCCeEEEEec
Confidence 765543 2567999999999999999975
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0012 Score=69.20 Aligned_cols=105 Identities=16% Similarity=0.141 Sum_probs=57.8
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecccc-
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCS- 382 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cl- 382 (689)
..++|||+||++|+|+.+++.. .|.++|+...+...... ....+...+....+..-.-++...||+|+|...-
T Consensus 81 ~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~--~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~APn 158 (300)
T 3eld_A 81 ITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH--MQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIGES 158 (300)
T ss_dssp CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC--CCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred CCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc--ccccCCceEEeecCceeeecCCCCcCEEeecCcCC
Confidence 4689999999999999999874 36677775421000000 0000111111111112223556899999985321
Q ss_pred --ccccccH--HHHHHHHHhccCCC-cEEEEEcCCCc
Q 044932 383 --ITWHAHG--GKLLLEMNRILRPS-GYFILSTKHDS 414 (689)
Q Consensus 383 --i~W~~d~--~~aL~EI~RVLRPG-G~fVIsdp~~~ 414 (689)
++..+.. ..+|.=+.++|+|| |.|++-.-..+
T Consensus 159 sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~y 195 (300)
T 3eld_A 159 SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPY 195 (300)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecccc
Confidence 1111111 12344446899999 99999865533
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00014 Score=71.56 Aligned_cols=97 Identities=24% Similarity=0.269 Sum_probs=63.6
Q ss_pred CeeEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhh----cccc--chhhccccCCCCCCCccchhhcccccc
Q 044932 546 KIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIY----DRGL--VGIYHDWCESFGTYPRSYDLLHADHLF 618 (689)
Q Consensus 546 ~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~----~RGL--ig~yhdwce~f~typrTyDLlHa~~lf 618 (689)
.-..|+|+++|.|.++.+|....- .|+-++- +.-|...- .+|+ |-..+.=.+.++.-+.+||+|.+..+|
T Consensus 37 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~l 113 (260)
T 1vl5_A 37 GNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAA 113 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCG
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhhh
Confidence 345899999999999999987532 4444443 23332222 2232 112221123355445899999999888
Q ss_pred ccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 619 SRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 619 s~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
..+.+ ...+|-+|-|+|||||+++|.+
T Consensus 114 ~~~~d----~~~~l~~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 114 HHFPN----PASFVSEAYRVLKKGGQLLLVD 140 (260)
T ss_dssp GGCSC----HHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhcCC----HHHHHHHHHHHcCCCCEEEEEE
Confidence 77653 2467899999999999999964
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0001 Score=71.73 Aligned_cols=97 Identities=14% Similarity=0.158 Sum_probs=64.1
Q ss_pred eeEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhhhhccc----cch-hhccccCCCCCCCccchhhccccccc
Q 044932 547 IRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPVIYDRG----LVG-IYHDWCESFGTYPRSYDLLHADHLFS 619 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~vI~~RG----Lig-~yhdwce~f~typrTyDLlHa~~lfs 619 (689)
-..|+|+++|.|.++..|... .. +|+-++- +..+...-.+. -|- +..|.. .++.-+.+||+|++.++|.
T Consensus 56 ~~~vLdiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l~ 131 (266)
T 3ujc_A 56 NSKVLDIGSGLGGGCMYINEKYGA---HTHGIDICSNIVNMANERVSGNNKIIFEANDIL-TKEFPENNFDLIYSRDAIL 131 (266)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHTCCSCTTEEEEECCTT-TCCCCTTCEEEEEEESCGG
T ss_pred CCEEEEECCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHhhcCCCeEEEECccc-cCCCCCCcEEEEeHHHHHH
Confidence 357999999999999999765 32 2333332 23333333332 122 222333 3454578999999999988
Q ss_pred cccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 620 RLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 620 ~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
.... -+ ...+|-++-|+|+|||.++|.+
T Consensus 132 ~~~~-~~-~~~~l~~~~~~L~pgG~l~~~~ 159 (266)
T 3ujc_A 132 ALSL-EN-KNKLFQKCYKWLKPTGTLLITD 159 (266)
T ss_dssp GSCH-HH-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcCh-HH-HHHHHHHHHHHcCCCCEEEEEE
Confidence 7632 22 2467899999999999999985
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00062 Score=65.22 Aligned_cols=114 Identities=14% Similarity=0.180 Sum_probs=69.5
Q ss_pred hHHHHHHHHHhhhcccCCCCCCeeEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhcc----cc-chhhccc
Q 044932 525 TRHWKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDR----GL-VGIYHDW 598 (689)
Q Consensus 525 ~~~W~~~v~~~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~R----GL-ig~yhdw 598 (689)
...|...+.+ ++..... .-..|||+++|.|.++..|..... +|+-++.. ..+...-.+ |+ +-+++.=
T Consensus 20 ~~~~~~~~~~-~l~~~~~---~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d 92 (246)
T 1y8c_A 20 YKKWSDFIIE-KCVENNL---VFDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQD 92 (246)
T ss_dssp HHHHHHHHHH-HHHTTTC---CTTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCC
T ss_pred HHHHHHHHHH-HHHHhCC---CCCeEEEeCCCCCHHHHHHHHCCC---cEEEEECCHHHHHHHHHHHhhcCCCeEEEecc
Confidence 3456666653 3332211 234799999999999999987643 34444432 333222222 21 1112211
Q ss_pred cCCCCCCCccchhhcccc-ccccccCCcCCccceeeeeccccccCcEEEE
Q 044932 599 CESFGTYPRSYDLLHADH-LFSRLKSRCRQPVSIVVEMDRILRPGGWAIV 647 (689)
Q Consensus 599 ce~f~typrTyDLlHa~~-lfs~~~~~c~~~~~illEmDRILRP~G~~ii 647 (689)
.+.++ +|.+||+|.+.+ +|....+.-. +..+|-+|-|+|+|||.+++
T Consensus 93 ~~~~~-~~~~fD~v~~~~~~l~~~~~~~~-~~~~l~~~~~~L~pgG~l~~ 140 (246)
T 1y8c_A 93 ISNLN-INRKFDLITCCLDSTNYIIDSDD-LKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp GGGCC-CSCCEEEEEECTTGGGGCCSHHH-HHHHHHHHHTTEEEEEEEEE
T ss_pred cccCC-ccCCceEEEEcCccccccCCHHH-HHHHHHHHHHhcCCCcEEEE
Confidence 22233 458999999998 8887643334 35688999999999999998
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0013 Score=66.95 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=36.9
Q ss_pred CcceEEecccc---cc--ccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEe
Q 044932 372 VFDAIHCDGCS---IT--WHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 372 SFDlVhcs~cl---i~--W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~ 435 (689)
.||+|+.-... .+ |. ..+|.++.|+|||||+|+.-.... .+...+...+|.+...
T Consensus 173 ~~D~iflD~fsp~~~p~lw~---~~~l~~l~~~L~pGG~l~tysaa~------~vrr~L~~aGF~v~~~ 232 (257)
T 2qy6_A 173 KVDAWFLDGFAPAKNPDMWT---QNLFNAMARLARPGGTLATFTSAG------FVRRGLQEAGFTMQKR 232 (257)
T ss_dssp CEEEEEECSSCTTTCGGGCC---HHHHHHHHHHEEEEEEEEESCCBH------HHHHHHHHHTEEEEEE
T ss_pred eEEEEEECCCCcccChhhcC---HHHHHHHHHHcCCCcEEEEEeCCH------HHHHHHHHCCCEEEeC
Confidence 79999863211 11 22 379999999999999998644322 2555666678987643
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=9e-05 Score=78.52 Aligned_cols=138 Identities=9% Similarity=0.123 Sum_probs=89.1
Q ss_pred hhhHHHHHHHHH---hhhcccCCCCCCeeEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhccccchhhc--
Q 044932 523 SDTRHWKAIVDR---SYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDRGLVGIYH-- 596 (689)
Q Consensus 523 ~D~~~W~~~v~~---~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~RGLig~yh-- 596 (689)
..+..|..+... ..+..+.+.. =..|+|+++|.|.|+.+|..... +|+=++-. +.+...-.+|+-....
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~~~~~--~~~VLDiGcG~G~~~~~l~~~g~---~v~gvD~s~~~~~~a~~~~~~~~~~~~ 157 (416)
T 4e2x_A 83 SGSSVMREHFAMLARDFLATELTGP--DPFIVEIGCNDGIMLRTIQEAGV---RHLGFEPSSGVAAKAREKGIRVRTDFF 157 (416)
T ss_dssp GGCHHHHHHHHHHHHHHHHTTTCSS--SCEEEEETCTTTTTHHHHHHTTC---EEEEECCCHHHHHHHHTTTCCEECSCC
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCC--CCEEEEecCCCCHHHHHHHHcCC---cEEEECCCHHHHHHHHHcCCCcceeee
Confidence 344566666542 2334444433 34799999999999999988754 45555543 4555555564322111
Q ss_pred --cccCCCCCCCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeCch----------h----------hH
Q 044932 597 --DWCESFGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKV----------E----------IL 654 (689)
Q Consensus 597 --dwce~f~typrTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~----------~----------~l 654 (689)
+-.+.++.-+.+||+|.+.++|.... + +..+|-++-|+|+|||.++|.... + ..
T Consensus 158 ~~~~~~~l~~~~~~fD~I~~~~vl~h~~---d-~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~ 233 (416)
T 4e2x_A 158 EKATADDVRRTEGPANVIYAANTLCHIP---Y-VQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSA 233 (416)
T ss_dssp SHHHHHHHHHHHCCEEEEEEESCGGGCT---T-HHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCH
T ss_pred chhhHhhcccCCCCEEEEEECChHHhcC---C-HHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCH
Confidence 11122222358999999999999886 3 366899999999999999997321 0 23
Q ss_pred HHHHHHHhhcceeEE
Q 044932 655 DPLEGILRSLHWEIR 669 (689)
Q Consensus 655 ~~v~~i~~~lrW~~~ 669 (689)
..++.++....+++.
T Consensus 234 ~~l~~ll~~aGf~~~ 248 (416)
T 4e2x_A 234 TSVQGMAQRCGFELV 248 (416)
T ss_dssp HHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHcCCEEE
Confidence 567777777777653
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00016 Score=68.83 Aligned_cols=98 Identities=16% Similarity=0.299 Sum_probs=65.5
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhc----ccc-------chhhccccCCCCCCCccchhhccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYD----RGL-------VGIYHDWCESFGTYPRSYDLLHAD 615 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~----RGL-------ig~yhdwce~f~typrTyDLlHa~ 615 (689)
..|+|+++|.|.++.+|..... +|+-++- +..+...-. .|+ +-+...=.+.++.-+.+||+|.+.
T Consensus 32 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 108 (235)
T 3sm3_A 32 DEILDIGCGSGKISLELASKGY---SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQ 108 (235)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEE
T ss_pred CeEEEECCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEc
Confidence 4699999999999999987743 3444443 222222222 333 222222233455557899999999
Q ss_pred cccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 616 HLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 616 ~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
++|....+.-.. ..+|-++-|+|||||.++|.+
T Consensus 109 ~~l~~~~~~~~~-~~~l~~~~~~L~pgG~l~~~~ 141 (235)
T 3sm3_A 109 AFLTSVPDPKER-SRIIKEVFRVLKPGAYLYLVE 141 (235)
T ss_dssp SCGGGCCCHHHH-HHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhcCCCHHHH-HHHHHHHHHHcCCCeEEEEEE
Confidence 998877654431 367889999999999999974
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00035 Score=68.02 Aligned_cols=122 Identities=12% Similarity=0.104 Sum_probs=73.7
Q ss_pred CeeEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhcc----c------------------------------
Q 044932 546 KIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDR----G------------------------------ 590 (689)
Q Consensus 546 ~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~R----G------------------------------ 590 (689)
.-..|||+++|.|.++..|..... -+|+-++-. ..|...-.+ +
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 346799999999999988876543 245544432 222222111 1
Q ss_pred -cc-hh-hccccCCCCCCC---ccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeCchh------------
Q 044932 591 -LV-GI-YHDWCESFGTYP---RSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVE------------ 652 (689)
Q Consensus 591 -Li-g~-yhdwce~f~typ---rTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~~------------ 652 (689)
-| -+ -.|..+..+..+ .+||+|.+..+|......-..+..+|-+|-|+|+|||++++.+...
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~ 213 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFS 213 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcccc
Confidence 02 11 123333222233 7999999998887433221113567889999999999999976211
Q ss_pred ----hHHHHHHHHhhcceeEE
Q 044932 653 ----ILDPLEGILRSLHWEIR 669 (689)
Q Consensus 653 ----~l~~v~~i~~~lrW~~~ 669 (689)
-...+..++....+.+.
T Consensus 214 ~~~~~~~~~~~~l~~aGf~~~ 234 (265)
T 2i62_A 214 SLPLGWETVRDAVEEAGYTIE 234 (265)
T ss_dssp CCCCCHHHHHHHHHHTTCEEE
T ss_pred ccccCHHHHHHHHHHCCCEEE
Confidence 23377777776667653
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00032 Score=73.09 Aligned_cols=39 Identities=13% Similarity=0.334 Sum_probs=31.6
Q ss_pred CCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc
Q 044932 309 IRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER 352 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR 352 (689)
..+|||+|||+|.++.+++.. .|+++|+++ .|++.|.++
T Consensus 27 g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~-----~al~~A~~~ 69 (301)
T 1m6y_A 27 EKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDS-----EVLRIAEEK 69 (301)
T ss_dssp TCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCH-----HHHHHHHHH
T ss_pred CCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCH-----HHHHHHHHH
Confidence 468999999999998887753 589999876 577777765
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00039 Score=66.62 Aligned_cols=98 Identities=15% Similarity=0.134 Sum_probs=61.4
Q ss_pred eeEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhccc-cchhhccccCCCCCCCccchhhc-cccccccccC
Q 044932 547 IRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDRG-LVGIYHDWCESFGTYPRSYDLLH-ADHLFSRLKS 623 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~RG-Lig~yhdwce~f~typrTyDLlH-a~~lfs~~~~ 623 (689)
-..|+|+++|.|.++..|..... +|+-++. +..+...-.+. =+-+++.=.+.++. +.+||+|. +.++|....+
T Consensus 41 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 41 ASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp CCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCS
T ss_pred CCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCC
Confidence 35799999999999999876532 3444443 23333332221 01122211223443 78999999 4557766544
Q ss_pred CcCCccceeeeeccccccCcEEEEeC
Q 044932 624 RCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 624 ~c~~~~~illEmDRILRP~G~~iirD 649 (689)
.-. +..+|-++-|+|+|||.++|.+
T Consensus 117 ~~~-~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 117 TEE-LGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp HHH-HHHHHHHHHHTEEEEEEEEECC
T ss_pred HHH-HHHHHHHHHHhcCCCeEEEEEe
Confidence 334 2568899999999999999974
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0041 Score=67.18 Aligned_cols=84 Identities=13% Similarity=0.154 Sum_probs=55.5
Q ss_pred CCCeEEEECCccchhHHHhhcCC--eEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAKE--VLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITW 385 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~~--V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W 385 (689)
++.+|||+||.+|+|+..|++++ |+++|..+-+. . ....+ ...+...|+..+..+.+.||+|+|-...
T Consensus 211 ~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~~--~----l~~~~-~V~~~~~d~~~~~~~~~~~D~vvsDm~~--- 280 (375)
T 4auk_A 211 NGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQ--S----LMDTG-QVTWLREDGFKFRPTRSNISWMVCDMVE--- 280 (375)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCCCH--H----HHTTT-CEEEECSCTTTCCCCSSCEEEEEECCSS---
T ss_pred CCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcCh--h----hccCC-CeEEEeCccccccCCCCCcCEEEEcCCC---
Confidence 46899999999999999998775 88898876322 1 11111 2234445555666667889999986432
Q ss_pred cccHHHHHHHHHhccCCC
Q 044932 386 HAHGGKLLLEMNRILRPS 403 (689)
Q Consensus 386 ~~d~~~aL~EI~RVLRPG 403 (689)
++..++.-+.+.|..|
T Consensus 281 --~p~~~~~l~~~wl~~~ 296 (375)
T 4auk_A 281 --KPAKVAALMAQWLVNG 296 (375)
T ss_dssp --CHHHHHHHHHHHHHTT
T ss_pred --ChHHhHHHHHHHHhcc
Confidence 3455666666655554
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00022 Score=68.70 Aligned_cols=115 Identities=15% Similarity=0.161 Sum_probs=76.9
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhcccc---chhhccccCCCCCCCccchhhccccccccccC
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDRGL---VGIYHDWCESFGTYPRSYDLLHADHLFSRLKS 623 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~RGL---ig~yhdwce~f~typrTyDLlHa~~lfs~~~~ 623 (689)
..|+|+++|.|.++.+|..... +|+-++- +..+...-.++. |-+.+.-.+.++.-+.+||+|.+.++|....+
T Consensus 55 ~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 131 (242)
T 3l8d_A 55 AEVLDVGCGDGYGTYKLSRTGY---KAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEE 131 (242)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSSC
T ss_pred CeEEEEcCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhccC
Confidence 3799999999999999988754 3444443 234444444421 11222222345545789999999999887643
Q ss_pred CcCCccceeeeeccccccCcEEEEeCch----------------------hhHHHHHHHHhhcceeEE
Q 044932 624 RCRQPVSIVVEMDRILRPGGWAIVRDKV----------------------EILDPLEGILRSLHWEIR 669 (689)
Q Consensus 624 ~c~~~~~illEmDRILRP~G~~iirD~~----------------------~~l~~v~~i~~~lrW~~~ 669 (689)
...+|-++-|+|+|||.++|.+.. .....++.++....+++.
T Consensus 132 ----~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 195 (242)
T 3l8d_A 132 ----PLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVV 195 (242)
T ss_dssp ----HHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEE
T ss_pred ----HHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEE
Confidence 245789999999999999997511 123467788877778754
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00015 Score=72.25 Aligned_cols=97 Identities=16% Similarity=0.302 Sum_probs=64.6
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhcc----ccchhh-------ccccCCCC---CCCccchhh
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDR----GLVGIY-------HDWCESFG---TYPRSYDLL 612 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~R----GLig~y-------hdwce~f~---typrTyDLl 612 (689)
..|||+++|.|.++..|..... +|+-++-. ..|.....+ +.-+.+ .|+. .++ ..+.+||+|
T Consensus 59 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~fD~V 134 (293)
T 3thr_A 59 HRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWL-TLDKDVPAGDGFDAV 134 (293)
T ss_dssp CEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGG-GHHHHSCCTTCEEEE
T ss_pred CEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChh-hCccccccCCCeEEE
Confidence 5799999999999999988754 56666543 344333222 111111 1111 112 346899999
Q ss_pred ccc-cccccccC----CcCCccceeeeeccccccCcEEEEeC
Q 044932 613 HAD-HLFSRLKS----RCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 613 Ha~-~lfs~~~~----~c~~~~~illEmDRILRP~G~~iirD 649 (689)
++. .+|....+ .-. ...+|-++-|+|+|||+++|..
T Consensus 135 ~~~g~~l~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~ 175 (293)
T 3thr_A 135 ICLGNSFAHLPDSKGDQSE-HRLALKNIASMVRPGGLLVIDH 175 (293)
T ss_dssp EECTTCGGGSCCSSSSSHH-HHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEcChHHhhcCccccCHHH-HHHHHHHHHHHcCCCeEEEEEe
Confidence 998 67776655 233 2567899999999999999874
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00016 Score=71.48 Aligned_cols=95 Identities=19% Similarity=0.306 Sum_probs=62.7
Q ss_pred eEEeecCCcchhHHHHhccC--CceEEEeccCCC-CCchhhhhc----ccc--chhhccccCCCCCCCccchhhcccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ--KIWVMNVVPVHA-PDTLPVIYD----RGL--VGIYHDWCESFGTYPRSYDLLHADHLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~--~vWVMNvvp~~~-~~tL~vI~~----RGL--ig~yhdwce~f~typrTyDLlHa~~lf 618 (689)
..|+|+++|.|.++..|... ..- |+-++. +..+...-. .|+ +-+...=.+.++.-+.+||+|++..+|
T Consensus 39 ~~vLDiG~G~G~~~~~l~~~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 115 (276)
T 3mgg_A 39 AKVLEAGCGIGAQTVILAKNNPDAE---ITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVL 115 (276)
T ss_dssp CEEEETTCTTSHHHHHHHHHCTTSE---EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCG
T ss_pred CeEEEecCCCCHHHHHHHHhCCCCE---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEechh
Confidence 57999999999999998764 222 333332 222322222 232 222222233455557899999999998
Q ss_pred ccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 619 SRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 619 s~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
....+. ..+|-+|-|+|+|||+++|.+
T Consensus 116 ~~~~~~----~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 116 EHLQSP----EEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp GGCSCH----HHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcCCH----HHHHHHHHHHcCCCcEEEEEE
Confidence 876543 457889999999999999975
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0014 Score=59.84 Aligned_cols=112 Identities=14% Similarity=0.141 Sum_probs=70.9
Q ss_pred eeEEeecCCcchhHHHHhccC-CceEEEeccCCCC-Cchhhhh----cccc---chhhccccCCCCCCCccchhhccccc
Q 044932 547 IRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-DTLPVIY----DRGL---VGIYHDWCESFGTYPRSYDLLHADHL 617 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-~tL~vI~----~RGL---ig~yhdwce~f~typrTyDLlHa~~l 617 (689)
-..|+|+++|.|.++..|... +-. .|+-++-. ..+...- ..|+ +-+..|..+.|+..+.+||+|.+.+.
T Consensus 26 ~~~vldiG~G~G~~~~~l~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 103 (178)
T 3hm2_A 26 HETLWDIGGGSGSIAIEWLRSTPQT--TAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGGG 103 (178)
T ss_dssp TEEEEEESTTTTHHHHHHHTTSSSE--EEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEECC-
T ss_pred CCeEEEeCCCCCHHHHHHHHHCCCC--eEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEECCc
Confidence 357999999999999988765 221 23333322 2332222 2233 22223444566655589999998877
Q ss_pred cccccCCcCCccceeeeeccccccCcEEEEeCc-hhhHHHHHHHHhhcceeE
Q 044932 618 FSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDK-VEILDPLEGILRSLHWEI 668 (689)
Q Consensus 618 fs~~~~~c~~~~~illEmDRILRP~G~~iirD~-~~~l~~v~~i~~~lrW~~ 668 (689)
+.. ..+|-++-|+|+|||.+++.+- .+-...+..+.....+++
T Consensus 104 ~~~--------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~ 147 (178)
T 3hm2_A 104 LTA--------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTI 147 (178)
T ss_dssp TTC--------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEE
T ss_pred ccH--------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCee
Confidence 754 2478889999999999999753 445556666666665554
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00026 Score=68.83 Aligned_cols=94 Identities=17% Similarity=0.174 Sum_probs=62.5
Q ss_pred eeEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhcc------ccchhhccccCCCCCCCccchhhccccccc
Q 044932 547 IRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDR------GLVGIYHDWCESFGTYPRSYDLLHADHLFS 619 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~R------GLig~yhdwce~f~typrTyDLlHa~~lfs 619 (689)
-..|+|+++|.|.++..|..... +|+-++-. ..+...-.+ .+--+..|+ +.++.-+.+||+|++..+|.
T Consensus 40 ~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~ 115 (263)
T 2yqz_A 40 EPVFLELGVGTGRIALPLIARGY---RYIALDADAAMLEVFRQKIAGVDRKVQVVQADA-RAIPLPDESVHGVIVVHLWH 115 (263)
T ss_dssp CCEEEEETCTTSTTHHHHHTTTC---EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCT-TSCCSCTTCEEEEEEESCGG
T ss_pred CCEEEEeCCcCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHhhccCCceEEEEccc-ccCCCCCCCeeEEEECCchh
Confidence 35799999999999999987643 34444332 233322222 111122233 44554467999999998887
Q ss_pred cccCCcCCccceeeeeccccccCcEEEEe
Q 044932 620 RLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 620 ~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
...+ ...+|-+|-|+|+|||++++.
T Consensus 116 ~~~~----~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 116 LVPD----WPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GCTT----HHHHHHHHHHHEEEEEEEEEE
T ss_pred hcCC----HHHHHHHHHHHCCCCcEEEEE
Confidence 6653 256789999999999999885
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00019 Score=72.57 Aligned_cols=103 Identities=12% Similarity=0.184 Sum_probs=67.7
Q ss_pred hcccCCCCCCeeEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhhhh----ccccch---hh-ccccCCCCCCC
Q 044932 537 LTGLGIDWSKIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPVIY----DRGLVG---IY-HDWCESFGTYP 606 (689)
Q Consensus 537 ~~~l~~~~~~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~vI~----~RGLig---~y-hdwce~f~typ 606 (689)
+..+.+..+ ..|+|+++|.|+++..|... +. +|+-++- +..+...- ..|+-+ +. .|+. .| +
T Consensus 65 ~~~~~~~~~--~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~---~ 135 (302)
T 3hem_A 65 LDKLNLEPG--MTLLDIGCGWGSTMRHAVAEYDV---NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE-EF---D 135 (302)
T ss_dssp HHTTCCCTT--CEEEEETCTTSHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGG-GC---C
T ss_pred HHHcCCCCc--CEEEEeeccCcHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHH-Hc---C
Confidence 334445443 47999999999999999775 53 3444443 23333322 234321 22 2332 22 8
Q ss_pred ccchhhccccccccccCC------cCCccceeeeeccccccCcEEEEeC
Q 044932 607 RSYDLLHADHLFSRLKSR------CRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 607 rTyDLlHa~~lfs~~~~~------c~~~~~illEmDRILRP~G~~iirD 649 (689)
.+||+|.+.++|....+. -. ...+|-++-|+|+|||.++|.+
T Consensus 136 ~~fD~v~~~~~~~~~~d~~~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~ 183 (302)
T 3hem_A 136 EPVDRIVSLGAFEHFADGAGDAGFER-YDTFFKKFYNLTPDDGRMLLHT 183 (302)
T ss_dssp CCCSEEEEESCGGGTTCCSSCCCTTH-HHHHHHHHHHSSCTTCEEEEEE
T ss_pred CCccEEEEcchHHhcCccccccchhH-HHHHHHHHHHhcCCCcEEEEEE
Confidence 999999999999877443 22 2567899999999999999975
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00039 Score=68.90 Aligned_cols=95 Identities=20% Similarity=0.198 Sum_probs=63.0
Q ss_pred eeEEeecCCcchhHHHHhccCCceEEEeccCCCC-CchhhhhccccchhhccccCCCCCCCccchhhccccccccccCCc
Q 044932 547 IRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDRGLVGIYHDWCESFGTYPRSYDLLHADHLFSRLKSRC 625 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~RGLig~yhdwce~f~typrTyDLlHa~~lfs~~~~~c 625 (689)
-..|||+++|.|.++..|.+... +|+-++-. ..+...-.+.-+-..+.=++.++.-+.+||+||+.++|..+.
T Consensus 35 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--- 108 (261)
T 3ege_A 35 GSVIADIGAGTGGYSVALANQGL---FVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHFS--- 108 (261)
T ss_dssp TCEEEEETCTTSHHHHHHHTTTC---EEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEESCGGGCS---
T ss_pred CCEEEEEcCcccHHHHHHHhCCC---EEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEcchHhhcc---
Confidence 36799999999999999987543 23333321 122211122222233333455665668999999999988773
Q ss_pred CCccceeeeeccccccCcEEEEeC
Q 044932 626 RQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 626 ~~~~~illEmDRILRP~G~~iirD 649 (689)
+ ...+|-++-|+|+ ||+++|-+
T Consensus 109 ~-~~~~l~~~~~~Lk-gG~~~~~~ 130 (261)
T 3ege_A 109 H-LEKSFQEMQRIIR-DGTIVLLT 130 (261)
T ss_dssp S-HHHHHHHHHHHBC-SSCEEEEE
T ss_pred C-HHHHHHHHHHHhC-CcEEEEEE
Confidence 3 2567999999999 99777754
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00057 Score=63.98 Aligned_cols=156 Identities=14% Similarity=0.046 Sum_probs=85.2
Q ss_pred hhhHHHHHHHHHhhhcccCCCCCCeeEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhh----hhcccc--chh
Q 044932 523 SDTRHWKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPV----IYDRGL--VGI 594 (689)
Q Consensus 523 ~D~~~W~~~v~~~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~v----I~~RGL--ig~ 594 (689)
.++..|...+-. ++..+ ..=..|+|+++|.|.++.+|... +-+ +|+-++- +..+.. +...|+ -=+
T Consensus 12 ~~~~~~~~~~~~-~l~~~----~~~~~vLDiG~G~G~~~~~l~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~ 84 (215)
T 4dzr_A 12 PDTEVLVEEAIR-FLKRM----PSGTRVIDVGTGSGCIAVSIALACPGV--SVTAVDLSMDALAVARRNAERFGAVVDWA 84 (215)
T ss_dssp HHHHHHHHHHHH-HHTTC----CTTEEEEEEESSBCHHHHHHHHHCTTE--EEEEEECC-------------------CC
T ss_pred ccHHHHHHHHHH-Hhhhc----CCCCEEEEecCCHhHHHHHHHHhCCCC--eEEEEECCHHHHHHHHHHHHHhCCceEEE
Confidence 456666666643 22211 22357999999999999888764 111 2333322 111111 111121 122
Q ss_pred hccccCCCCC---CCccchhhccccccccccCC-------------cC---------CccceeeeeccccccCcE-EEEe
Q 044932 595 YHDWCESFGT---YPRSYDLLHADHLFSRLKSR-------------CR---------QPVSIVVEMDRILRPGGW-AIVR 648 (689)
Q Consensus 595 yhdwce~f~t---yprTyDLlHa~~lfs~~~~~-------------c~---------~~~~illEmDRILRP~G~-~iir 648 (689)
..|+.+.|+. .+.+||+|-++.-|...... .. ++..++-++-|+|+|||. +++.
T Consensus 85 ~~d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 164 (215)
T 4dzr_A 85 AADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLE 164 (215)
T ss_dssp HHHHHHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEE
T ss_pred EcchHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 3355553332 23799999986544321110 00 014577899999999999 7776
Q ss_pred CchhhHHHHHHHHh--hcceeE-EE-eecCCCceEEEEEec
Q 044932 649 DKVEILDPLEGILR--SLHWEI-RM-TYAQDKEGILCAQKT 685 (689)
Q Consensus 649 D~~~~l~~v~~i~~--~lrW~~-~~-~~~~~~E~iL~~~K~ 685 (689)
-...-...+..++. ...|.. .+ .+..+.+++++++|.
T Consensus 165 ~~~~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~~~ 205 (215)
T 4dzr_A 165 VGHNQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVTRE 205 (215)
T ss_dssp CTTSCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEEEC
T ss_pred ECCccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEEEc
Confidence 55556677777777 555643 22 244556889998874
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0043 Score=61.55 Aligned_cols=93 Identities=13% Similarity=-0.014 Sum_probs=54.2
Q ss_pred CCeEEEECCccchhHHHhh---cCCeEEEEcCCcccHHHHHHHHHHcCC--C--cEEecCCCCC---------------C
Q 044932 309 IRVVLEIGSADLSFVASLL---AKEVLTLTVGLKDDLVDLAQVALERGF--P--AVVSPLGNRR---------------L 366 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La---~~~V~gmDIsp~D~seamlq~A~eRGL--~--~i~~~~dt~~---------------L 366 (689)
.++||++|||.. +..|+ +..|++++.++.-. ..+.+...+.|+ . ..+...++.. +
T Consensus 31 a~~VLEiGtGyS--Tl~lA~~~~g~VvtvE~d~~~~-~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l 107 (202)
T 3cvo_A 31 AEVILEYGSGGS--TVVAAELPGKHVTSVESDRAWA-RMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY 107 (202)
T ss_dssp CSEEEEESCSHH--HHHHHTSTTCEEEEEESCHHHH-HHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred CCEEEEECchHH--HHHHHHcCCCEEEEEeCCHHHH-HHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence 579999999743 33333 34588999877422 222222333465 2 2233333211 2
Q ss_pred C--------C-CCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 367 P--------F-PSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 367 P--------F-pD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
+ + ..++||+|+.-.- .....+....+.|||||++++..
T Consensus 108 ~~~~~~i~~~~~~~~fDlIfIDg~------k~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 108 PDYPLAVWRTEGFRHPDVVLVDGR------FRVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp THHHHGGGGCTTCCCCSEEEECSS------SHHHHHHHHHHHCSSCEEEEETT
T ss_pred HHHhhhhhccccCCCCCEEEEeCC------CchhHHHHHHHhcCCCeEEEEeC
Confidence 2 2 2378999987531 11256666779999999997765
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00018 Score=68.34 Aligned_cols=115 Identities=16% Similarity=0.149 Sum_probs=76.7
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhcc-ccchhhccccCCCCCCCccchhhccccccccccCCc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDR-GLVGIYHDWCESFGTYPRSYDLLHADHLFSRLKSRC 625 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~R-GLig~yhdwce~f~typrTyDLlHa~~lfs~~~~~c 625 (689)
..|||+++|.|.++..|..... +|+-++. +..+...-.+ ++--+..|. +.++ .+.+||+|.+.++|..... -
T Consensus 45 ~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~~~-~ 118 (211)
T 3e23_A 45 AKILELGCGAGYQAEAMLAAGF---DVDATDGSPELAAEASRRLGRPVRTMLF-HQLD-AIDAYDAVWAHACLLHVPR-D 118 (211)
T ss_dssp CEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHTSCCEECCG-GGCC-CCSCEEEEEECSCGGGSCH-H
T ss_pred CcEEEECCCCCHHHHHHHHcCC---eEEEECCCHHHHHHHHHhcCCceEEeee-ccCC-CCCcEEEEEecCchhhcCH-H
Confidence 4799999999999999987753 3444443 2334333333 222222232 3344 6789999999998876542 1
Q ss_pred CCccceeeeeccccccCcEEEEeCch---------------hhHHHHHHHHhhcc-eeEE
Q 044932 626 RQPVSIVVEMDRILRPGGWAIVRDKV---------------EILDPLEGILRSLH-WEIR 669 (689)
Q Consensus 626 ~~~~~illEmDRILRP~G~~iirD~~---------------~~l~~v~~i~~~lr-W~~~ 669 (689)
. +..+|-++-|+|+|||.++|.... --...++.++.... |+..
T Consensus 119 ~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~ 177 (211)
T 3e23_A 119 E-LADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASV 177 (211)
T ss_dssp H-HHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEE
T ss_pred H-HHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEE
Confidence 2 246789999999999999997321 14667778887776 7653
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00021 Score=71.37 Aligned_cols=95 Identities=17% Similarity=0.211 Sum_probs=64.5
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhc----ccc---chhhccccCCCC-CCCccchhhcccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYD----RGL---VGIYHDWCESFG-TYPRSYDLLHADHLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~----RGL---ig~yhdwce~f~-typrTyDLlHa~~lf 618 (689)
..|+|+++|.|.++..|..... +|+-++- +..|...-. .|+ |-+++.=.+.++ ..+.+||+|.+.++|
T Consensus 70 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 146 (285)
T 4htf_A 70 LRVLDAGGGEGQTAIKMAERGH---QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVL 146 (285)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCG
T ss_pred CEEEEeCCcchHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchh
Confidence 4699999999999999987754 3444433 233333222 243 222332233344 456899999999999
Q ss_pred ccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 619 SRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 619 s~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
....+. ..+|-++-|+|+|||.++|.+
T Consensus 147 ~~~~~~----~~~l~~~~~~LkpgG~l~~~~ 173 (285)
T 4htf_A 147 EWVADP----RSVLQTLWSVLRPGGVLSLMF 173 (285)
T ss_dssp GGCSCH----HHHHHHHHHTEEEEEEEEEEE
T ss_pred hcccCH----HHHHHHHHHHcCCCeEEEEEE
Confidence 877432 457899999999999999975
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0018 Score=63.46 Aligned_cols=129 Identities=17% Similarity=0.195 Sum_probs=76.4
Q ss_pred eEEeecCCcchhHHHHhc--cCCceEEEeccCCCC-Cchhhh----hcccc--chhhccccCCCCC---CCccchhhccc
Q 044932 548 RNVMDMKSIYGGFAAALA--QQKIWVMNVVPVHAP-DTLPVI----YDRGL--VGIYHDWCESFGT---YPRSYDLLHAD 615 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~--~~~vWVMNvvp~~~~-~tL~vI----~~RGL--ig~yhdwce~f~t---yprTyDLlHa~ 615 (689)
..|+|+++|.|.++..|. .... .|+-++.. .-+.+. -..|+ |-+++.=.+.++. ++.+||+|.+.
T Consensus 72 ~~vLDiG~G~G~~~~~la~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 72 NTICDVGAGAGFPSLPIKICFPHL---HVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp CEEEEECSSSCTTHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CEEEEecCCCCHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 579999999998887776 3322 23333332 222222 22244 3333322233332 36789999987
Q ss_pred cccccccCCcCCccceeeeeccccccCcEEEEeCc---hhhHHHHHHHHhhcceeEEEe---ecC---CCceEEEEEecc
Q 044932 616 HLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDK---VEILDPLEGILRSLHWEIRMT---YAQ---DKEGILCAQKTM 686 (689)
Q Consensus 616 ~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~---~~~l~~v~~i~~~lrW~~~~~---~~~---~~E~iL~~~K~~ 686 (689)
.+ .. +..++-++-|+|+|||.+++-+. .+-+..+...+....+..... ... ..-.+++++|.=
T Consensus 149 ~~-------~~-~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~k~~ 220 (240)
T 1xdz_A 149 AV-------AR-LSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKIK 220 (240)
T ss_dssp CC-------SC-HHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEECS
T ss_pred cc-------CC-HHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEEEEecC
Confidence 63 23 36688889999999999998753 334556666677777765322 111 223466667654
Q ss_pred C
Q 044932 687 W 687 (689)
Q Consensus 687 w 687 (689)
.
T Consensus 221 ~ 221 (240)
T 1xdz_A 221 N 221 (240)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00022 Score=71.66 Aligned_cols=98 Identities=12% Similarity=0.109 Sum_probs=62.2
Q ss_pred CeeEEeecCCcchhHHHHhccC---CceEEEeccCCC-CCchhhhh----cccc-chhhccccCCCCCCCccchhhcccc
Q 044932 546 KIRNVMDMKSIYGGFAAALAQQ---KIWVMNVVPVHA-PDTLPVIY----DRGL-VGIYHDWCESFGTYPRSYDLLHADH 616 (689)
Q Consensus 546 ~iRNvmDMna~~GgFAAal~~~---~vWVMNvvp~~~-~~tL~vI~----~RGL-ig~yhdwce~f~typrTyDLlHa~~ 616 (689)
.-.+|+|+++|.|.++..|.+. ..- |+-++- +..+...- ..|+ |-+++.=.+.++ +|.+||+||+.+
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~ 97 (284)
T 3gu3_A 22 KPVHIVDYGCGYGYLGLVLMPLLPEGSK---YTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE-LNDKYDIAICHA 97 (284)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSCTTCE---EEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCC-CSSCEEEEEEES
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCE---EEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcC-cCCCeeEEEECC
Confidence 3468999999999999999865 222 222222 11111111 1121 112222233344 488999999999
Q ss_pred ccccccCCcCCccceeeeeccccccCcEEEEeCch
Q 044932 617 LFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKV 651 (689)
Q Consensus 617 lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~ 651 (689)
+|....+. ..+|-++-|+|+|||++++.+..
T Consensus 98 ~l~~~~~~----~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 98 FLLHMTTP----ETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp CGGGCSSH----HHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhhcCCCH----HHHHHHHHHHcCCCCEEEEEecc
Confidence 98876433 45788999999999999987643
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00029 Score=68.72 Aligned_cols=96 Identities=16% Similarity=0.158 Sum_probs=63.7
Q ss_pred eeEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhccc---cchhhccccCCCCCCCccchhhcccccccccc
Q 044932 547 IRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDRG---LVGIYHDWCESFGTYPRSYDLLHADHLFSRLK 622 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~RG---Lig~yhdwce~f~typrTyDLlHa~~lfs~~~ 622 (689)
=..|||+++|.|.++..|.....- +|+-++- +..+...-.+. -|-+...=.+.++.-+.+||+|.+.++|....
T Consensus 45 ~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 122 (253)
T 3g5l_A 45 QKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIA 122 (253)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGCS
T ss_pred CCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhhh
Confidence 357999999999999999876431 3444443 22333332221 11111111234555568999999999988773
Q ss_pred CCcCCccceeeeeccccccCcEEEEe
Q 044932 623 SRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 623 ~~c~~~~~illEmDRILRP~G~~iir 648 (689)
+ +..+|-++-|+|+|||.++|.
T Consensus 123 ~----~~~~l~~~~~~LkpgG~l~~~ 144 (253)
T 3g5l_A 123 S----FDDICKKVYINLKSSGSFIFS 144 (253)
T ss_dssp C----HHHHHHHHHHHEEEEEEEEEE
T ss_pred h----HHHHHHHHHHHcCCCcEEEEE
Confidence 3 256789999999999999996
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00053 Score=68.32 Aligned_cols=95 Identities=13% Similarity=0.196 Sum_probs=62.0
Q ss_pred eeEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhccc-cchhhccccCCCCCCCccchhhccccccccccCC
Q 044932 547 IRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDRG-LVGIYHDWCESFGTYPRSYDLLHADHLFSRLKSR 624 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~RG-Lig~yhdwce~f~typrTyDLlHa~~lfs~~~~~ 624 (689)
-..|+|+++|.|.++.+|..... +|+-++- +..+...-.+. -+-+.+.=.+.++ ++.+||+|++..+|....
T Consensus 58 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~-- 131 (279)
T 3ccf_A 58 GEFILDLGCGTGQLTEKIAQSGA---EVLGTDNAATMIEKARQNYPHLHFDVADARNFR-VDKPLDAVFSNAMLHWVK-- 131 (279)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSCEEECCTTTCC-CSSCEEEEEEESCGGGCS--
T ss_pred CCEEEEecCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHhhCCCCEEEECChhhCC-cCCCcCEEEEcchhhhCc--
Confidence 35799999999999999987443 2333332 22333222221 0111221223355 488999999999887654
Q ss_pred cCCccceeeeeccccccCcEEEEeC
Q 044932 625 CRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 625 c~~~~~illEmDRILRP~G~~iirD 649 (689)
+ ...+|-+|-|+|||||+++|..
T Consensus 132 -d-~~~~l~~~~~~LkpgG~l~~~~ 154 (279)
T 3ccf_A 132 -E-PEAAIASIHQALKSGGRFVAEF 154 (279)
T ss_dssp -C-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred -C-HHHHHHHHHHhcCCCcEEEEEe
Confidence 3 2567899999999999999963
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00042 Score=65.04 Aligned_cols=135 Identities=15% Similarity=0.111 Sum_probs=77.8
Q ss_pred EEeecCCcchhHHHHhccC--CceEEEeccCCCC-Cchhhh----hcccc---chhhccccCCCC-CCCccchhhccccc
Q 044932 549 NVMDMKSIYGGFAAALAQQ--KIWVMNVVPVHAP-DTLPVI----YDRGL---VGIYHDWCESFG-TYPRSYDLLHADHL 617 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~--~vWVMNvvp~~~~-~tL~vI----~~RGL---ig~yhdwce~f~-typrTyDLlHa~~l 617 (689)
.|+|+++|.|.++.+|... +-- +|+-++.. ..+... -..|+ |-+.+.=.+.++ ..+.+||+|-++..
T Consensus 25 ~vLDlGcG~G~~~~~l~~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 102 (197)
T 3eey_A 25 TVVDATCGNGNDTAFLASLVGENG--RVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLG 102 (197)
T ss_dssp EEEESCCTTSHHHHHHHHHHCTTC--EEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEES
T ss_pred EEEEcCCCCCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcCC
Confidence 7999999999999888754 211 34444432 333222 22233 222222222333 45689999998765
Q ss_pred cccccCCc------CCccceeeeeccccccCcEEEEeC------chhhHHHHHHHHhhc---ceeEEEeec----CCCce
Q 044932 618 FSRLKSRC------RQPVSIVVEMDRILRPGGWAIVRD------KVEILDPLEGILRSL---HWEIRMTYA----QDKEG 678 (689)
Q Consensus 618 fs~~~~~c------~~~~~illEmDRILRP~G~~iirD------~~~~l~~v~~i~~~l---rW~~~~~~~----~~~E~ 678 (689)
|-...+.. . ...+|-++-|+|+|||.+++-. ...-...+...+..+ .|.+..... ..+..
T Consensus 103 ~~~~~~~~~~~~~~~-~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~pp~ 181 (197)
T 3eey_A 103 YLPSGDHSISTRPET-TIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQANCPPI 181 (197)
T ss_dssp BCTTSCTTCBCCHHH-HHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETTCCSCCCE
T ss_pred cccCcccccccCccc-HHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEeccCccCCCe
Confidence 51111111 1 1347889999999999999874 122345555666555 487765421 23556
Q ss_pred EEEEEecc
Q 044932 679 ILCAQKTM 686 (689)
Q Consensus 679 iL~~~K~~ 686 (689)
+++.+|..
T Consensus 182 ~~~~~~~~ 189 (197)
T 3eey_A 182 LVCIEKIS 189 (197)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcc
Confidence 77777753
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00066 Score=62.19 Aligned_cols=112 Identities=21% Similarity=0.221 Sum_probs=71.0
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhc----ccc---ch-hhccccCCCCCCCccchhhcccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYD----RGL---VG-IYHDWCESFGTYPRSYDLLHADHLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~----RGL---ig-~yhdwce~f~typrTyDLlHa~~lf 618 (689)
.+|+|+++|.|.++..|.... -+|+-++.. ..+...-. .|+ +- +..|+.+.++.. .+||+|-+++.+
T Consensus 35 ~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~v~~~~~~ 110 (192)
T 1l3i_A 35 DVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI-PDIDIAVVGGSG 110 (192)
T ss_dssp CEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS-CCEEEEEESCCT
T ss_pred CEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccC-CCCCEEEECCch
Confidence 489999999999998887764 234444332 22222211 222 11 122333323322 389999888766
Q ss_pred ccccCCcCCccceeeeeccccccCcEEEEeC-chhhHHHHHHHHhhcceeEEE
Q 044932 619 SRLKSRCRQPVSIVVEMDRILRPGGWAIVRD-KVEILDPLEGILRSLHWEIRM 670 (689)
Q Consensus 619 s~~~~~c~~~~~illEmDRILRP~G~~iirD-~~~~l~~v~~i~~~lrW~~~~ 670 (689)
.. +..+|-++-|+|+|||.+++-+ ....+..+..++....|++..
T Consensus 111 ~~-------~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 156 (192)
T 1l3i_A 111 GE-------LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVNI 156 (192)
T ss_dssp TC-------HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCEE
T ss_pred HH-------HHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCceEE
Confidence 32 2567889999999999998875 456777888888776665443
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00033 Score=66.34 Aligned_cols=93 Identities=20% Similarity=0.263 Sum_probs=61.0
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhccc-cchhhccccCCCCCCCccchhhccccccccccCCc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDRG-LVGIYHDWCESFGTYPRSYDLLHADHLFSRLKSRC 625 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~RG-Lig~yhdwce~f~typrTyDLlHa~~lfs~~~~~c 625 (689)
.+|+|+++|.|.++..| ... +|+-++-. ..+...-.+. -+-+.+.-.+.++.-+.+||+|.+.++|....
T Consensus 38 ~~vLdiG~G~G~~~~~l-~~~----~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--- 109 (211)
T 2gs9_A 38 ESLLEVGAGTGYWLRRL-PYP----QKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVE--- 109 (211)
T ss_dssp SEEEEETCTTCHHHHHC-CCS----EEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCS---
T ss_pred CeEEEECCCCCHhHHhC-CCC----eEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcC---
Confidence 47999999999999998 220 23333322 2333333321 12222222334554567999999999887664
Q ss_pred CCccceeeeeccccccCcEEEEeC
Q 044932 626 RQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 626 ~~~~~illEmDRILRP~G~~iirD 649 (689)
+ ...+|-+|-|+|+|||.++|.+
T Consensus 110 ~-~~~~l~~~~~~L~pgG~l~i~~ 132 (211)
T 2gs9_A 110 D-VERVLLEARRVLRPGGALVVGV 132 (211)
T ss_dssp C-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred C-HHHHHHHHHHHcCCCCEEEEEe
Confidence 3 3568999999999999999974
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00065 Score=68.94 Aligned_cols=134 Identities=15% Similarity=0.059 Sum_probs=83.5
Q ss_pred eEEeecCCcchhHHHHhc--cCCceEEEeccCCC-CCchhhh----hcccc---chhhccccCCCCCCCccchhhccccc
Q 044932 548 RNVMDMKSIYGGFAAALA--QQKIWVMNVVPVHA-PDTLPVI----YDRGL---VGIYHDWCESFGTYPRSYDLLHADHL 617 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~--~~~vWVMNvvp~~~-~~tL~vI----~~RGL---ig~yhdwce~f~typrTyDLlHa~~l 617 (689)
..|+|+++|.|.++.+|. ..+-. +|+-++- +..+... -..|+ |-+++.=.+.++ ++.+||+|.+.++
T Consensus 120 ~~vLDiGcG~G~~~~~la~~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~ 196 (305)
T 3ocj_A 120 CVVASVPCGWMSELLALDYSACPGV--QLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLD-TREGYDLLTSNGL 196 (305)
T ss_dssp CEEEETTCTTCHHHHTSCCTTCTTC--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCC-CCSCEEEEECCSS
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCC--eEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCC-ccCCeEEEEECCh
Confidence 469999999999999984 33322 2333332 2222222 22333 222222222233 4599999999998
Q ss_pred cccccCCcCCccceeeeeccccccCcEEEEeCch---------------------------------------hhHHHHH
Q 044932 618 FSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKV---------------------------------------EILDPLE 658 (689)
Q Consensus 618 fs~~~~~c~~~~~illEmDRILRP~G~~iirD~~---------------------------------------~~l~~v~ 658 (689)
|....+.-.. ..+|-++-|+|+|||.++|.+-. .....+.
T Consensus 197 ~~~~~~~~~~-~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (305)
T 3ocj_A 197 NIYEPDDARV-TELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTR 275 (305)
T ss_dssp GGGCCCHHHH-HHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHH
T ss_pred hhhcCCHHHH-HHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHH
Confidence 8776544331 34788999999999999998711 2367788
Q ss_pred HHHhhcceeEEEee--cCCCceEEEEEec
Q 044932 659 GILRSLHWEIRMTY--AQDKEGILCAQKT 685 (689)
Q Consensus 659 ~i~~~lrW~~~~~~--~~~~E~iL~~~K~ 685 (689)
.++..-.++..-.. ....-..++|+|.
T Consensus 276 ~~l~~aGF~~v~~~~~~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 276 AQLEEAGFTDLRFEDDRARLFPTVIARKP 304 (305)
T ss_dssp HHHHHTTCEEEEEECCTTSSSCEEEEECC
T ss_pred HHHHHCCCEEEEEEcccCceeeEEEEecC
Confidence 88888888764432 2223457888874
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00042 Score=65.40 Aligned_cols=124 Identities=8% Similarity=0.028 Sum_probs=74.1
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhhhh----cccc--chhhc-cccCCCCCCCccchhhcccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPVIY----DRGL--VGIYH-DWCESFGTYPRSYDLLHADHLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~vI~----~RGL--ig~yh-dwce~f~typrTyDLlHa~~lf 618 (689)
..|+|+++|.|.++.+|... +-. +|+-++. +..+...- ..|+ |-+++ |+.+ +. .+.+||+|.+.++
T Consensus 67 ~~vLDiG~G~G~~~~~l~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~-~~~~~D~i~~~~~- 141 (207)
T 1jsx_A 67 ERFIDVGTGPGLPGIPLSIVRPEA--HFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEE-FP-SEPPFDGVISRAF- 141 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCTTS--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTT-SC-CCSCEEEEECSCS-
T ss_pred CeEEEECCCCCHHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhh-CC-ccCCcCEEEEecc-
Confidence 37999999999998888753 221 2333332 12222221 2243 22222 3322 22 2468999987653
Q ss_pred ccccCCcCCccceeeeeccccccCcEEEEeCchhhHHHHHHHHhhcceeEEE----e--ecCCCceEEEEEec
Q 044932 619 SRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGILRSLHWEIRM----T--YAQDKEGILCAQKT 685 (689)
Q Consensus 619 s~~~~~c~~~~~illEmDRILRP~G~~iirD~~~~l~~v~~i~~~lrW~~~~----~--~~~~~E~iL~~~K~ 685 (689)
.. +..++-++-|+|+|||++++-.....-..++.+.. .|+... . +......++++.|+
T Consensus 142 ------~~-~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~k~ 205 (207)
T 1jsx_A 142 ------AS-LNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQVESVVKLQVPALDGERHLVVIKAN 205 (207)
T ss_dssp ------SS-HHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEEEEEEEEEECC--CCEEEEEEEEEC
T ss_pred ------CC-HHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--CCceeeeeeeccCCCCCceEEEEEEec
Confidence 22 35678889999999999999876666677777776 565432 1 12334667777764
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00051 Score=69.95 Aligned_cols=104 Identities=12% Similarity=-0.012 Sum_probs=66.3
Q ss_pred hhcccC-CCCCCeeEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhhh----hccccc---hhhccccCCCCCC
Q 044932 536 YLTGLG-IDWSKIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPVI----YDRGLV---GIYHDWCESFGTY 605 (689)
Q Consensus 536 y~~~l~-~~~~~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~vI----~~RGLi---g~yhdwce~f~ty 605 (689)
++..+. +. .-..|||+++|.|.|+..|... .. .|+-++- +.-+... -..|+- -+++.=.+.++.-
T Consensus 108 l~~~l~~~~--~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 182 (312)
T 3vc1_A 108 LMDHLGQAG--PDDTLVDAGCGRGGSMVMAHRRFGS---RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFD 182 (312)
T ss_dssp HHTTSCCCC--TTCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC
T ss_pred HHHHhccCC--CCCEEEEecCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCC
Confidence 444444 43 3357999999999999998765 32 2333332 2223222 223432 2222222344433
Q ss_pred CccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 606 PRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 606 prTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
+.+||+|.+.++|... + ...+|-++-|+|+|||.++|-+
T Consensus 183 ~~~fD~V~~~~~l~~~-~----~~~~l~~~~~~LkpgG~l~~~~ 221 (312)
T 3vc1_A 183 KGAVTASWNNESTMYV-D----LHDLFSEHSRFLKVGGRYVTIT 221 (312)
T ss_dssp TTCEEEEEEESCGGGS-C----HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCEeEEEECCchhhC-C----HHHHHHHHHHHcCCCcEEEEEE
Confidence 4899999999988876 3 2678999999999999999874
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00062 Score=64.55 Aligned_cols=119 Identities=13% Similarity=0.081 Sum_probs=75.1
Q ss_pred cCCCCCCeeEEeecCCcchhHHHHhccCC-ceEEEeccCCC-CCchhhhhc----ccc--ch-hhccccCCCCCCCccch
Q 044932 540 LGIDWSKIRNVMDMKSIYGGFAAALAQQK-IWVMNVVPVHA-PDTLPVIYD----RGL--VG-IYHDWCESFGTYPRSYD 610 (689)
Q Consensus 540 l~~~~~~iRNvmDMna~~GgFAAal~~~~-vWVMNvvp~~~-~~tL~vI~~----RGL--ig-~yhdwce~f~typrTyD 610 (689)
+.+..+ ..|+|+++|.|.++.+|.... -. +|+-++- +..+...-+ .|+ |- +..|..+.++.. .+||
T Consensus 36 l~~~~~--~~vLDiG~G~G~~~~~la~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~D 110 (204)
T 3e05_A 36 LRLQDD--LVMWDIGAGSASVSIEASNLMPNG--RIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDL-PDPD 110 (204)
T ss_dssp TTCCTT--CEEEEETCTTCHHHHHHHHHCTTS--EEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTS-CCCS
T ss_pred cCCCCC--CEEEEECCCCCHHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcC-CCCC
Confidence 444433 579999999999999887542 11 2333332 223322222 233 11 122333433322 5799
Q ss_pred hhccccccccccCCcCCccceeeeeccccccCcEEEEeC-chhhHHHHHHHHhhcceeEEE
Q 044932 611 LLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD-KVEILDPLEGILRSLHWEIRM 670 (689)
Q Consensus 611 LlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD-~~~~l~~v~~i~~~lrW~~~~ 670 (689)
+|-+++.+. . +..+|-++-|+|+|||.+++.. ..+-...+..++....|++.+
T Consensus 111 ~i~~~~~~~------~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 164 (204)
T 3e05_A 111 RVFIGGSGG------M-LEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGYMVEV 164 (204)
T ss_dssp EEEESCCTT------C-HHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEECCCCc------C-HHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCCceeE
Confidence 998877664 3 3678899999999999999984 446778888888888886544
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.023 Score=59.45 Aligned_cols=114 Identities=18% Similarity=0.201 Sum_probs=70.1
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc------C----CCc
Q 044932 291 HYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER------G----FPA 356 (689)
Q Consensus 291 ~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR------G----L~~ 356 (689)
.|.+.|.. +|.+.. +..++||=||-|.|+.+..++.. .|+.++|+| ..++.|++. + -..
T Consensus 68 ~YhE~l~h-~~l~~~-p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~-----~Vv~~a~~~lp~~~~~~~~dpRv 140 (294)
T 3o4f_A 68 IYHEMMTH-VPLLAH-GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDA-----GVVSFCRQYLPNHNAGSYDDPRF 140 (294)
T ss_dssp HHHHHHHH-HHHHHS-SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCH-----HHHHHHHHHCHHHHTTGGGCTTE
T ss_pred HHHHHHHH-HHHhhC-CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCH-----HHHHHHHhcCccccccccCCCcE
Confidence 55554442 232222 25789999999999999888764 477888876 345555432 1 112
Q ss_pred EEecCCCCC-CCCCCCCcceEEecccccccc----ccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 357 VVSPLGNRR-LPFPSGVFDAIHCDGCSITWH----AHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 357 i~~~~dt~~-LPFpD~SFDlVhcs~cli~W~----~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
.+...|+.. |--..++||+|+.-.. -++. -.-..++..+.|+|+|||.++.....
T Consensus 141 ~v~~~Dg~~~l~~~~~~yDvIi~D~~-dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~s 200 (294)
T 3o4f_A 141 KLVIDDGVNFVNQTSQTFDVIISDCT-DPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGV 200 (294)
T ss_dssp EEEESCTTTTTSCSSCCEEEEEESCC-CCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EEEechHHHHHhhccccCCEEEEeCC-CcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCC
Confidence 233344322 2335689999985311 0111 01237899999999999999997543
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00027 Score=68.80 Aligned_cols=120 Identities=18% Similarity=0.205 Sum_probs=75.7
Q ss_pred eeEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhccc------cchhhccccCCCCCCCccchhhccccccc
Q 044932 547 IRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDRG------LVGIYHDWCESFGTYPRSYDLLHADHLFS 619 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~RG------Lig~yhdwce~f~typrTyDLlHa~~lfs 619 (689)
-..|+|+++|.|.++.+|..... .+|+-++. +..+...-.+. -|-+++.=.+.++.-+.+||+|.+.++|.
T Consensus 80 ~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 80 TSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCEEEEECCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 46899999999999999877631 12333332 12222222111 01122222334454456899999999887
Q ss_pred cccCCcCCccceeeeeccccccCcEEEEeCchh---------------hHHHHHHHHhhcceeEEE
Q 044932 620 RLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVE---------------ILDPLEGILRSLHWEIRM 670 (689)
Q Consensus 620 ~~~~~c~~~~~illEmDRILRP~G~~iirD~~~---------------~l~~v~~i~~~lrW~~~~ 670 (689)
...+.. +..+|-++-|+|+|||.++|.+... ....++.++....++..-
T Consensus 158 ~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 221 (241)
T 2ex4_A 158 HLTDQH--LAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLA 221 (241)
T ss_dssp GSCHHH--HHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEE
T ss_pred hCCHHH--HHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEE
Confidence 664421 1357899999999999999965311 367788888777776543
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0026 Score=73.63 Aligned_cols=115 Identities=14% Similarity=0.063 Sum_probs=63.9
Q ss_pred HHHHHHHHhhcccccC-CCCCCeEEEECCccchhHH------Hhhc-----------CCeEEEEcCCcccHHHHHHHHHH
Q 044932 290 LHYLESIEEMVPDIEW-GKNIRVVLEIGSADLSFVA------SLLA-----------KEVLTLTVGLKDDLVDLAQVALE 351 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~-G~~~R~VLDVGCGtGsfaa------~La~-----------~~V~gmDIsp~D~seamlq~A~e 351 (689)
..|-+.|...+.++.. +....+|||||||+|-+.. .-++ ..|++++-+|. ....++....
T Consensus 390 ~~Y~~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~--A~~~l~~~~~ 467 (745)
T 3ua3_A 390 DVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPN--AIVTLKYMNV 467 (745)
T ss_dssp HHHHHHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChH--HHHHHHHHHh
Confidence 4565555554332211 1124589999999997631 1122 26899988763 1122232223
Q ss_pred cCCCc--EEecCCCCCCCCC-----CCCcceEEeccc--cccccccHHHHHHHHHhccCCCcEEE
Q 044932 352 RGFPA--VVSPLGNRRLPFP-----SGVFDAIHCDGC--SITWHAHGGKLLLEMNRILRPSGYFI 407 (689)
Q Consensus 352 RGL~~--i~~~~dt~~LPFp-----D~SFDlVhcs~c--li~W~~d~~~aL~EI~RVLRPGG~fV 407 (689)
.|+.. .+...+++.+.+| ...+|+|++-.. ... .+--...|.-+.|.|||||.++
T Consensus 468 Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~-nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 468 RTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGD-NELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBG-GGSHHHHHHTTGGGSCTTCEEE
T ss_pred cCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccc-hhccHHHHHHHHHhCCCCcEEE
Confidence 45433 3334455555552 378999997421 111 1222357777889999999765
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.00053 Score=69.13 Aligned_cols=94 Identities=11% Similarity=0.006 Sum_probs=60.1
Q ss_pred CeeEEeecCCcchhHHHHhcc---CCceEEEeccCCC-CCchhhhhcc-----ccch---hhccccCCCCCCC------c
Q 044932 546 KIRNVMDMKSIYGGFAAALAQ---QKIWVMNVVPVHA-PDTLPVIYDR-----GLVG---IYHDWCESFGTYP------R 607 (689)
Q Consensus 546 ~iRNvmDMna~~GgFAAal~~---~~vWVMNvvp~~~-~~tL~vI~~R-----GLig---~yhdwce~f~typ------r 607 (689)
.-..|+|+++|.|.++..|.. ... +|+-++- +..+...-.+ |+.. ..+.=.+.++.-+ .
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 112 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFE---QIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQ 112 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCS---EEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSS
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCC
Confidence 346799999999999999983 332 2343332 2223222222 2111 1221123333222 7
Q ss_pred cchhhccccccccccCCcCCccceeeeeccccccCcEEEE
Q 044932 608 SYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIV 647 (689)
Q Consensus 608 TyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~ii 647 (689)
+||+|++..+|... + ...+|-++-|+|||||.++|
T Consensus 113 ~fD~V~~~~~l~~~----~-~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 113 KIDMITAVECAHWF----D-FEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp CEEEEEEESCGGGS----C-HHHHHHHHHHHEEEEEEEEE
T ss_pred CeeEEeHhhHHHHh----C-HHHHHHHHHHhcCCCcEEEE
Confidence 99999999988766 4 36789999999999999998
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.00049 Score=66.15 Aligned_cols=97 Identities=13% Similarity=0.151 Sum_probs=62.5
Q ss_pred eeEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhcccc---chhhccccCCCCCCCccchhhcccccccccc
Q 044932 547 IRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDRGL---VGIYHDWCESFGTYPRSYDLLHADHLFSRLK 622 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~RGL---ig~yhdwce~f~typrTyDLlHa~~lfs~~~ 622 (689)
-.+|+|+++|.|.++..|...+.- +|+-++- +..+...-.+.- |-+.+.=.+.++.-+.+||+|.+.++|....
T Consensus 44 ~~~vLdiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 121 (243)
T 3bkw_A 44 GLRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVE 121 (243)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCGGGCS
T ss_pred CCEEEEEcCcCCHHHHHHHHCCCC--eEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEeccccccc
Confidence 357999999999999999876431 2333332 122222222210 2222222233554468999999999887664
Q ss_pred CCcCCccceeeeeccccccCcEEEEeC
Q 044932 623 SRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 623 ~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
+ ...+|-++-|+|+|||.++|..
T Consensus 122 ---~-~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 122 ---D-VARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp ---C-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---h-HHHHHHHHHHhcCcCcEEEEEe
Confidence 3 3567889999999999999864
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0015 Score=58.60 Aligned_cols=128 Identities=18% Similarity=0.191 Sum_probs=71.1
Q ss_pred eEEeecCCcchhHHHHhccC-----CceEEEeccCCCCCchhhhhccccchhhccccCCCC--------CCCccchhhcc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-----KIWVMNVVPVHAPDTLPVIYDRGLVGIYHDWCESFG--------TYPRSYDLLHA 614 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-----~vWVMNvvp~~~~~tL~vI~~RGLig~yhdwce~f~--------typrTyDLlHa 614 (689)
.+|+|+++|.|+|+.+|... .|..+-+-| . +.+ ..+--+..|+.+ ++ .-+.+||+|.+
T Consensus 24 ~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~--~---~~~---~~~~~~~~d~~~-~~~~~~~~~~~~~~~~D~i~~ 94 (180)
T 1ej0_A 24 MTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP--M---DPI---VGVDFLQGDFRD-ELVMKALLERVGDSKVQVVMS 94 (180)
T ss_dssp CEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC--C---CCC---TTEEEEESCTTS-HHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc--c---ccc---CcEEEEEccccc-chhhhhhhccCCCCceeEEEE
Confidence 47999999999999988654 233333322 1 111 111111122222 11 22478999999
Q ss_pred ccccccccCC-cC------CccceeeeeccccccCcEEEEeCc-hhhHHHHHHHHhhcceeE-EEee-----cCCCceEE
Q 044932 615 DHLFSRLKSR-CR------QPVSIVVEMDRILRPGGWAIVRDK-VEILDPLEGILRSLHWEI-RMTY-----AQDKEGIL 680 (689)
Q Consensus 615 ~~lfs~~~~~-c~------~~~~illEmDRILRP~G~~iirD~-~~~l~~v~~i~~~lrW~~-~~~~-----~~~~E~iL 680 (689)
+..|...... .. +...+|-++-|+|+|||.+++..- ..-...+...+.. .|.. .+.. ....|.++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 173 (180)
T 1ej0_A 95 DMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKVKVRKPDSSRARSREVYI 173 (180)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH-HEEEEEEECCTTSCTTCCEEEE
T ss_pred CCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHH-hhhhEEeecCCcccccCceEEE
Confidence 8877643321 00 003578889999999999999632 2233344444443 3654 2221 12357888
Q ss_pred EEEec
Q 044932 681 CAQKT 685 (689)
Q Consensus 681 ~~~K~ 685 (689)
+|++.
T Consensus 174 ~~~~~ 178 (180)
T 1ej0_A 174 VATGR 178 (180)
T ss_dssp EEEEE
T ss_pred EEccC
Confidence 88763
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.00074 Score=63.49 Aligned_cols=94 Identities=17% Similarity=0.195 Sum_probs=59.7
Q ss_pred EEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhcc----cc-chhhccccCCCCCCCccchhhcccccccccc
Q 044932 549 NVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDR----GL-VGIYHDWCESFGTYPRSYDLLHADHLFSRLK 622 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~R----GL-ig~yhdwce~f~typrTyDLlHa~~lfs~~~ 622 (689)
.|+|+++|.|.++.+|..... +|+-++.. ..+...-.+ |+ +-+++.=.+.++.-+.+||+|.+. |..+
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~~- 105 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGY---EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCHL- 105 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTC---EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCCC-
T ss_pred CEEEECCCCCHhHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhcC-
Confidence 799999999999999988753 45555542 333332222 32 222222223334335799999874 3332
Q ss_pred CCcCCccceeeeeccccccCcEEEEeC
Q 044932 623 SRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 623 ~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
..-. ...+|-+|-|+|+|||.+++.+
T Consensus 106 ~~~~-~~~~l~~~~~~L~pgG~l~~~~ 131 (202)
T 2kw5_A 106 PSSL-RQQLYPKVYQGLKPGGVFILEG 131 (202)
T ss_dssp CHHH-HHHHHHHHHTTCCSSEEEEEEE
T ss_pred CHHH-HHHHHHHHHHhcCCCcEEEEEE
Confidence 2223 3568899999999999999984
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.00068 Score=63.59 Aligned_cols=119 Identities=14% Similarity=0.128 Sum_probs=69.4
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhcc----ccch-hhccccCCCCCCCccchhhccccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDR----GLVG-IYHDWCESFGTYPRSYDLLHADHLFSRL 621 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~R----GLig-~yhdwce~f~typrTyDLlHa~~lfs~~ 621 (689)
..|+|+++|.|.++..|.....- +|+-++-. ..+...-.+ .-|- +..|. ..++.-+.+||+|-+.++|...
T Consensus 44 ~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~-~~~~~~~~~fD~v~~~~~~~~~ 120 (215)
T 2pxx_A 44 DRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAHVPQLRWETMDV-RKLDFPSASFDVVLEKGTLDAL 120 (215)
T ss_dssp CCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTTCTTCEEEECCT-TSCCSCSSCEEEEEEESHHHHH
T ss_pred CeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhcccCCCcEEEEcch-hcCCCCCCcccEEEECcchhhh
Confidence 46999999999999998765321 23333321 222211111 1111 12232 2234345799999998888654
Q ss_pred cC------------CcCCccceeeeeccccccCcEEEEeCchhhHHHHHHHH--hhcceeEEEe
Q 044932 622 KS------------RCRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGIL--RSLHWEIRMT 671 (689)
Q Consensus 622 ~~------------~c~~~~~illEmDRILRP~G~~iirD~~~~l~~v~~i~--~~lrW~~~~~ 671 (689)
.. ... ...+|-++-|+|+|||.+++.+-..- ...+.++ .+..|.....
T Consensus 121 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~li~~~~~~~-~~~~~~~~~~~~~~~~~~~ 182 (215)
T 2pxx_A 121 LAGERDPWTVSSEGVHT-VDQVLSEVSRVLVPGGRFISMTSAAP-HFRTRHYAQAYYGWSLRHA 182 (215)
T ss_dssp TTTCSCTTSCCHHHHHH-HHHHHHHHHHHEEEEEEEEEEESCCH-HHHHHHHCCGGGCEEEEEE
T ss_pred ccccccccccccchhHH-HHHHHHHHHHhCcCCCEEEEEeCCCc-HHHHHHHhccccCcEEEEE
Confidence 31 112 25689999999999999999864331 1122333 4456876544
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0015 Score=63.84 Aligned_cols=129 Identities=12% Similarity=0.215 Sum_probs=75.2
Q ss_pred eeEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhh----hhcccc---chhh-ccccCCCC-CCCccchhhcccc
Q 044932 547 IRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPV----IYDRGL---VGIY-HDWCESFG-TYPRSYDLLHADH 616 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~v----I~~RGL---ig~y-hdwce~f~-typrTyDLlHa~~ 616 (689)
-++|+|+++|.|.++.+|....- ...|+-++.. ..+.. +-..|+ |-++ .|..+.++ ..+.+||+|..+.
T Consensus 72 ~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~ 150 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA 150 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET
T ss_pred CCEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC
Confidence 45899999999999999987210 1234444432 22222 222233 2222 23344444 4568999998664
Q ss_pred ccccccCCcCCccceeeeeccccccCcEEEEeCc-----------------hhhHHHHHHHH----hhcceeEEEeecCC
Q 044932 617 LFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDK-----------------VEILDPLEGIL----RSLHWEIRMTYAQD 675 (689)
Q Consensus 617 lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~-----------------~~~l~~v~~i~----~~lrW~~~~~~~~~ 675 (689)
-... ...++-++-|+|||||++++.+- ..+...++.+. ..-+|.+.+. .-
T Consensus 151 ~~~~-------~~~~l~~~~~~LkpgG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l--p~ 221 (232)
T 3ntv_A 151 AKAQ-------SKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFL--NI 221 (232)
T ss_dssp TSSS-------HHHHHHHHGGGEEEEEEEEEECTTGGGGGGCGGGGGCHHHHHHHHHHHHHHHHHHTCTTEEEEEE--CS
T ss_pred cHHH-------HHHHHHHHHHhcCCCeEEEEeeCCcCccccCcccccchhhhHHHHHHHHHHHHHhcCCCeEEEEE--Ec
Confidence 3222 24567778899999999999432 11223344333 3446776655 23
Q ss_pred CceEEEEEec
Q 044932 676 KEGILCAQKT 685 (689)
Q Consensus 676 ~E~iL~~~K~ 685 (689)
.+++++++|+
T Consensus 222 ~dG~~i~~k~ 231 (232)
T 3ntv_A 222 DDGLAISIKG 231 (232)
T ss_dssp TTCEEEEEEC
T ss_pred CCceEEEEEC
Confidence 4689999885
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0012 Score=68.56 Aligned_cols=133 Identities=22% Similarity=0.267 Sum_probs=81.0
Q ss_pred CCeeEEeecCCcchhHHHHhccC--CceEEEeccCCCCCchhhh----hccccc----hhhccccCCCCCCCccchhhcc
Q 044932 545 SKIRNVMDMKSIYGGFAAALAQQ--KIWVMNVVPVHAPDTLPVI----YDRGLV----GIYHDWCESFGTYPRSYDLLHA 614 (689)
Q Consensus 545 ~~iRNvmDMna~~GgFAAal~~~--~vWVMNvvp~~~~~tL~vI----~~RGLi----g~yhdwce~f~typrTyDLlHa 614 (689)
..-..|+|+++|.|.++.+|... .+-| +-++-+..+... -..|+- =+-+|..+ .+|..||+|.+
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~---~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~D~v~~ 254 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRG---TLVELAGPAERARRRFADAGLADRVTVAEGDFFK---PLPVTADVVLL 254 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEE---EEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS---CCSCCEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCEE---EEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCC---cCCCCCCEEEE
Confidence 45678999999999999998753 2222 222222222221 123332 12234444 35666999999
Q ss_pred ccccccccCCcCCccceeeeeccccccCcEEEEeCc--h--h-----------------------hHHHHHHHHhhccee
Q 044932 615 DHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDK--V--E-----------------------ILDPLEGILRSLHWE 667 (689)
Q Consensus 615 ~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~--~--~-----------------------~l~~v~~i~~~lrW~ 667 (689)
.++|..+.+.-. ..+|-++-|+|+|||.++|-|. . + ....++.++..-.++
T Consensus 255 ~~vl~~~~~~~~--~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~ 332 (374)
T 1qzz_A 255 SFVLLNWSDEDA--LTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLA 332 (374)
T ss_dssp ESCGGGSCHHHH--HHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEE
T ss_pred eccccCCCHHHH--HHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCc
Confidence 999887654311 2578999999999999988665 2 1 234566666666666
Q ss_pred EE-EeecCCCc-----eEEEEEec
Q 044932 668 IR-MTYAQDKE-----GILCAQKT 685 (689)
Q Consensus 668 ~~-~~~~~~~E-----~iL~~~K~ 685 (689)
.. +....... .++.|+|.
T Consensus 333 ~~~~~~~~~~~~~~~~~~i~~~~~ 356 (374)
T 1qzz_A 333 LASERTSGSTTLPFDFSILEFTAV 356 (374)
T ss_dssp EEEEEEECCSSCSSCEEEEEEEEC
T ss_pred eEEEEECCCCcccCCcEEEEEEEC
Confidence 43 33323334 78888774
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.00048 Score=72.81 Aligned_cols=96 Identities=21% Similarity=0.285 Sum_probs=62.2
Q ss_pred eEEeecCCcchhHHHHhccC--CceEEEeccCCC-CCchhhhhcc---------c-c----chhhccccCCC------CC
Q 044932 548 RNVMDMKSIYGGFAAALAQQ--KIWVMNVVPVHA-PDTLPVIYDR---------G-L----VGIYHDWCESF------GT 604 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~--~vWVMNvvp~~~-~~tL~vI~~R---------G-L----ig~yhdwce~f------~t 604 (689)
..|||+++|.|.++..|... +-+ .|+-++- +..|...-.+ | + |-+.+.-.+.+ +.
T Consensus 85 ~~VLDlGcG~G~~~~~la~~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~ 162 (383)
T 4fsd_A 85 ATVLDLGCGTGRDVYLASKLVGEHG--KVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV 162 (383)
T ss_dssp CEEEEESCTTSHHHHHHHHHHTTTC--EEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred CEEEEecCccCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence 47999999999998888653 221 2333333 2333333332 3 1 22222222222 44
Q ss_pred CCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 605 YPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 605 yprTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
.+.+||+|++..+|....+. ..+|-++-|+|||||+++|.+
T Consensus 163 ~~~~fD~V~~~~~l~~~~d~----~~~l~~~~r~LkpgG~l~i~~ 203 (383)
T 4fsd_A 163 PDSSVDIVISNCVCNLSTNK----LALFKEIHRVLRDGGELYFSD 203 (383)
T ss_dssp CTTCEEEEEEESCGGGCSCH----HHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCEEEEEEccchhcCCCH----HHHHHHHHHHcCCCCEEEEEE
Confidence 56799999999999876542 567999999999999999975
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.00047 Score=66.27 Aligned_cols=111 Identities=19% Similarity=0.210 Sum_probs=72.8
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCCCchhhhhccccchhhccccCCCCCCCccchhhccccccccccCCcCC
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAPDTLPVIYDRGLVGIYHDWCESFGTYPRSYDLLHADHLFSRLKSRCRQ 627 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~~tL~vI~~RGLig~yhdwce~f~typrTyDLlHa~~lfs~~~~~c~~ 627 (689)
..|+|+++|.|.++.+|... ..+-. .+..+...-.+++- +++.-.+.++.-+.+||+|.+.++|....+
T Consensus 49 ~~vLDiG~G~G~~~~~l~~~--~~vD~----s~~~~~~a~~~~~~-~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~---- 117 (219)
T 1vlm_A 49 GRGVEIGVGTGRFAVPLKIK--IGVEP----SERMAEIARKRGVF-VLKGTAENLPLKDESFDFALMVTTICFVDD---- 117 (219)
T ss_dssp SCEEEETCTTSTTHHHHTCC--EEEES----CHHHHHHHHHTTCE-EEECBTTBCCSCTTCEEEEEEESCGGGSSC----
T ss_pred CcEEEeCCCCCHHHHHHHHH--hccCC----CHHHHHHHHhcCCE-EEEcccccCCCCCCCeeEEEEcchHhhccC----
Confidence 46999999999999999876 11111 12333334444322 222222345544579999999998876532
Q ss_pred ccceeeeeccccccCcEEEEeCch------------------------hhHHHHHHHHhhcceeEE
Q 044932 628 PVSIVVEMDRILRPGGWAIVRDKV------------------------EILDPLEGILRSLHWEIR 669 (689)
Q Consensus 628 ~~~illEmDRILRP~G~~iirD~~------------------------~~l~~v~~i~~~lrW~~~ 669 (689)
...+|-++-|+|+|||.++|.+-. -....+..++....++..
T Consensus 118 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~ 183 (219)
T 1vlm_A 118 PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEF 183 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEE
Confidence 256789999999999999997321 134677777777777653
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0019 Score=62.50 Aligned_cols=107 Identities=11% Similarity=0.102 Sum_probs=68.2
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhcc--ccchhhccccCCCCCC-CccchhhccccccccccC
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDR--GLVGIYHDWCESFGTY-PRSYDLLHADHLFSRLKS 623 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~R--GLig~yhdwce~f~ty-prTyDLlHa~~lfs~~~~ 623 (689)
..|+|+++|.|.++..|..... .|+-++-. ..|...-.+ .+-=+..|+.+.++.- +.+||+|.+.
T Consensus 50 ~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~-------- 118 (226)
T 3m33_A 50 TRVLEAGCGHGPDAARFGPQAA---RWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR-------- 118 (226)
T ss_dssp CEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE--------
T ss_pred CeEEEeCCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC--------
Confidence 4699999999999999988743 35544432 334443333 1222234565666644 6899999876
Q ss_pred CcCCccceeeeeccccccCcEEEEeCchhhHHHHHHHHhhccee
Q 044932 624 RCRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGILRSLHWE 667 (689)
Q Consensus 624 ~c~~~~~illEmDRILRP~G~~iirD~~~~l~~v~~i~~~lrW~ 667 (689)
-. ...+|-++-|+|+|||.++.-....-+..+...+....+.
T Consensus 119 -~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~ 160 (226)
T 3m33_A 119 -RG-PTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGWD 160 (226)
T ss_dssp -SC-CSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHHTTCE
T ss_pred -CC-HHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHHCCCe
Confidence 13 3567889999999999999432222344555555554443
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.00043 Score=66.53 Aligned_cols=94 Identities=17% Similarity=0.254 Sum_probs=60.9
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhcc----cc-chhh-ccccCCCCCCCccchhhcccc-ccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDR----GL-VGIY-HDWCESFGTYPRSYDLLHADH-LFS 619 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~R----GL-ig~y-hdwce~f~typrTyDLlHa~~-lfs 619 (689)
..|+|+++|.|.++..|... .+|+-++-. ..|...-.+ |. +-+. .|.. .++ +|.+||+|-+.+ +|.
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~~~~ 108 (243)
T 3d2l_A 35 KRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMR-ELE-LPEPVDAITILCDSLN 108 (243)
T ss_dssp CEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGG-GCC-CSSCEEEEEECTTGGG
T ss_pred CeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChh-hcC-CCCCcCEEEEeCCchh
Confidence 57999999999999999877 245544432 333322222 11 1111 1222 232 468999999875 776
Q ss_pred cccCCcCCccceeeeeccccccCcEEEEe
Q 044932 620 RLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 620 ~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
...+.-. +..+|-++-|+|+|||.+++.
T Consensus 109 ~~~~~~~-~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 109 YLQTEAD-VKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp GCCSHHH-HHHHHHHHHHHEEEEEEEEEE
T ss_pred hcCCHHH-HHHHHHHHHHhcCCCeEEEEE
Confidence 6544444 356788999999999999983
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0025 Score=59.75 Aligned_cols=78 Identities=19% Similarity=0.289 Sum_probs=44.1
Q ss_pred ccchhhccccccccccCC-------cCCccceeeeeccccccCcEEEEeCc-hhhHHHHHHHHhhcceeEEEee-----c
Q 044932 607 RSYDLLHADHLFSRLKSR-------CRQPVSIVVEMDRILRPGGWAIVRDK-VEILDPLEGILRSLHWEIRMTY-----A 673 (689)
Q Consensus 607 rTyDLlHa~~lfs~~~~~-------c~~~~~illEmDRILRP~G~~iirD~-~~~l~~v~~i~~~lrW~~~~~~-----~ 673 (689)
.+||+|-+++.+...... -.+...+|-++-|+|+|||.+++..- .+-+..+...+...-..+.+.. .
T Consensus 105 ~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~~f~~v~~~~~~~~r~ 184 (201)
T 2plw_A 105 KKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGMFQLVHTTKPKASRN 184 (201)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHTTEEEEEECCCC----
T ss_pred CcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHHHHheEEEECCcccCC
Confidence 689999988765431100 00012367789999999999998521 1223334444444322333331 1
Q ss_pred CCCceEEEEEe
Q 044932 674 QDKEGILCAQK 684 (689)
Q Consensus 674 ~~~E~iL~~~K 684 (689)
...|.+|||++
T Consensus 185 ~s~e~y~v~~~ 195 (201)
T 2plw_A 185 ESREIYLVCKN 195 (201)
T ss_dssp -CCEEEEEEEE
T ss_pred cCceEEEEEec
Confidence 34688999976
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0019 Score=62.07 Aligned_cols=121 Identities=12% Similarity=0.102 Sum_probs=73.5
Q ss_pred eEEeecCCc-chhHHHHhccCCceEEEeccCCCC-Cchhh----hhcccc-chhhccccCCCCCC-Cccchhhccccccc
Q 044932 548 RNVMDMKSI-YGGFAAALAQQKIWVMNVVPVHAP-DTLPV----IYDRGL-VGIYHDWCESFGTY-PRSYDLLHADHLFS 619 (689)
Q Consensus 548 RNvmDMna~-~GgFAAal~~~~vWVMNvvp~~~~-~tL~v----I~~RGL-ig~yhdwce~f~ty-prTyDLlHa~~lfs 619 (689)
..|+|+++| .|.++.+|.... --+|+-++-. ..+.. +-..|+ |-+++.=...+..+ +.+||+|-++-.|.
T Consensus 57 ~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~~ 134 (230)
T 3evz_A 57 EVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPYY 134 (230)
T ss_dssp CEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCCC
T ss_pred CEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCCc
Confidence 579999999 999998887652 1134444432 22222 122243 22222111123333 38999999875553
Q ss_pred cccC----------------CcCCccceeeeeccccccCcEEEE--eCchhhHHHHHHHHhhcceeEEEe
Q 044932 620 RLKS----------------RCRQPVSIVVEMDRILRPGGWAIV--RDKVEILDPLEGILRSLHWEIRMT 671 (689)
Q Consensus 620 ~~~~----------------~c~~~~~illEmDRILRP~G~~ii--rD~~~~l~~v~~i~~~lrW~~~~~ 671 (689)
.... ... +..+|-++-|+|+|||.+++ -.....+..+..++....|++...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 203 (230)
T 3evz_A 135 DKPLGRVLTEREAIGGGKYGEEF-SVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDI 203 (230)
T ss_dssp ---------------CCSSSCHH-HHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCccccccChhhhhccCccchHH-HHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEE
Confidence 3211 111 24578889999999999888 345567888888888888987665
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.00074 Score=66.70 Aligned_cols=97 Identities=19% Similarity=0.216 Sum_probs=62.9
Q ss_pred eeEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhccccchhhccccCCCCCCCccchhhccccccccccCCc
Q 044932 547 IRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDRGLVGIYHDWCESFGTYPRSYDLLHADHLFSRLKSRC 625 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~RGLig~yhdwce~f~typrTyDLlHa~~lfs~~~~~c 625 (689)
-..|||+++|.|.++..|..... +|+-++. +..+...-.+..--+.+.=.+.++.-+.+||+|-+.+.+-.+...
T Consensus 55 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~- 130 (260)
T 2avn_A 55 PCRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN- 130 (260)
T ss_dssp CCEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-
T ss_pred CCeEEEeCCCcCHHHHHHHHcCC---eEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc-
Confidence 35799999999999999987753 3444443 233443333332001111123345446799999988755544332
Q ss_pred CCccceeeeeccccccCcEEEEeC
Q 044932 626 RQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 626 ~~~~~illEmDRILRP~G~~iirD 649 (689)
...+|-+|-|+|+|||.++|..
T Consensus 131 --~~~~l~~~~~~LkpgG~l~~~~ 152 (260)
T 2avn_A 131 --KDKAFSEIRRVLVPDGLLIATV 152 (260)
T ss_dssp --HHHHHHHHHHHEEEEEEEEEEE
T ss_pred --HHHHHHHHHHHcCCCeEEEEEe
Confidence 2568999999999999999874
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0038 Score=60.30 Aligned_cols=117 Identities=15% Similarity=0.097 Sum_probs=76.3
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhc----cccch---h-hccccCCCCCCCccchhhcccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYD----RGLVG---I-YHDWCESFGTYPRSYDLLHADHLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~----RGLig---~-yhdwce~f~typrTyDLlHa~~lf 618 (689)
..|+|+++|.|.++..|..... +|+-++- +..+...-. .|+.. + -.|..+ ++ .+.+||+|.+.++|
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~v~~~~~l 142 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPER---FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFT-WR-PTELFDLIFDYVFF 142 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTE---EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTT-CC-CSSCEEEEEEESST
T ss_pred CCEEEeCCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhc-CC-CCCCeeEEEEChhh
Confidence 4899999999999999987653 3444443 223322222 22211 1 223333 22 45689999999988
Q ss_pred ccccCCcCCccceeeeeccccccCcEEEEeCch-----------hhHHHHHHHHhhcceeEEEe
Q 044932 619 SRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKV-----------EILDPLEGILRSLHWEIRMT 671 (689)
Q Consensus 619 s~~~~~c~~~~~illEmDRILRP~G~~iirD~~-----------~~l~~v~~i~~~lrW~~~~~ 671 (689)
.... .-. ...+|-++-|+|+|||.+++-+-. -....++.++....|+....
T Consensus 143 ~~~~-~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 204 (235)
T 3lcc_A 143 CAIE-PEM-RPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSV 204 (235)
T ss_dssp TTSC-GGG-HHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEE
T ss_pred hcCC-HHH-HHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEE
Confidence 8664 223 256789999999999999985321 13578888888888886443
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0014 Score=65.44 Aligned_cols=112 Identities=17% Similarity=0.180 Sum_probs=71.3
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhc----ccc-chhhc-cccCCCCCCCccchhhcccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYD----RGL-VGIYH-DWCESFGTYPRSYDLLHADHLFSR 620 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~----RGL-ig~yh-dwce~f~typrTyDLlHa~~lfs~ 620 (689)
..|+|+++|.|.++.++..... +|+-++- +..+...-+ .|+ +-+++ |+.+.|+ +.+||+|.++.++..
T Consensus 122 ~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~--~~~fD~Vv~n~~~~~ 196 (254)
T 2nxc_A 122 DKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALP--FGPFDLLVANLYAEL 196 (254)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGG--GCCEEEEEEECCHHH
T ss_pred CEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCc--CCCCCEEEECCcHHH
Confidence 4799999999999988876543 4444443 233322222 232 22222 2322221 468999998766542
Q ss_pred ccCCcCCccceeeeeccccccCcEEEEeCc-hhhHHHHHHHHhhcceeEEEe
Q 044932 621 LKSRCRQPVSIVVEMDRILRPGGWAIVRDK-VEILDPLEGILRSLHWEIRMT 671 (689)
Q Consensus 621 ~~~~c~~~~~illEmDRILRP~G~~iirD~-~~~l~~v~~i~~~lrW~~~~~ 671 (689)
+..++-++-|+|+|||.+++.+- ..-...+..++....++..-.
T Consensus 197 -------~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~ 241 (254)
T 2nxc_A 197 -------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEE 241 (254)
T ss_dssp -------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEE
T ss_pred -------HHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEE
Confidence 24678889999999999999753 335677777777777776443
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0013 Score=68.95 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=63.2
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCCCch----hhhhcccc---chhhccccCCCCCCCccchhhcccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAPDTL----PVIYDRGL---VGIYHDWCESFGTYPRSYDLLHADHLFSR 620 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~~tL----~vI~~RGL---ig~yhdwce~f~typrTyDLlHa~~lfs~ 620 (689)
..|||+++|.|.++..|...+.. .|+-++...-+ ..+...|+ |-+.+.-.+.++.-+.+||+|.+..++..
T Consensus 68 ~~VLDvGcG~G~~~~~la~~g~~--~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~ 145 (349)
T 3q7e_A 68 KVVLDVGSGTGILCMFAAKAGAR--KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYC 145 (349)
T ss_dssp CEEEEESCTTSHHHHHHHHTTCS--EEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBT
T ss_pred CEEEEEeccchHHHHHHHHCCCC--EEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccccc
Confidence 46999999999999998876531 23333332222 22333454 33444334444323489999999776554
Q ss_pred ccCCcCCccceeeeeccccccCcEEEEe
Q 044932 621 LKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 621 ~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
+...-. +..+|-+++|+|+|||.+|+.
T Consensus 146 l~~~~~-~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 146 LFYESM-LNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp BTBTCC-HHHHHHHHHHHEEEEEEEESC
T ss_pred ccCchh-HHHHHHHHHHhCCCCCEEccc
Confidence 444344 467888999999999998754
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0018 Score=64.34 Aligned_cols=130 Identities=8% Similarity=0.126 Sum_probs=72.4
Q ss_pred eeEEeecCCcchhHHHHhccC-----CceEEEeccCCCCCchhhhhccccc---hhhc-cccCCCCCC-----Cccchhh
Q 044932 547 IRNVMDMKSIYGGFAAALAQQ-----KIWVMNVVPVHAPDTLPVIYDRGLV---GIYH-DWCESFGTY-----PRSYDLL 612 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~-----~vWVMNvvp~~~~~tL~vI~~RGLi---g~yh-dwce~f~ty-----prTyDLl 612 (689)
-++|+|+++|.|.++.+|... .|.-+-+-|......-..+-..|+- -+.+ |..+.++.+ +.+||+|
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V 140 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI 140 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence 468999999999999888752 2332222222111111223333442 1222 222333333 5789999
Q ss_pred ccccccccccCCcCCccceeeeeccccccCcEEEEeCch------------hhHHHHHHHHh----hcceeEEEeecCCC
Q 044932 613 HADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKV------------EILDPLEGILR----SLHWEIRMTYAQDK 676 (689)
Q Consensus 613 Ha~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~------------~~l~~v~~i~~----~lrW~~~~~~~~~~ 676 (689)
..++....+ ..+|-++=|+|||||++++.|-. .....++.+.. .=++++.+. .-.
T Consensus 141 ~~d~~~~~~-------~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l--p~~ 211 (242)
T 3r3h_A 141 FIDADKTNY-------LNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLL--AIA 211 (242)
T ss_dssp EEESCGGGH-------HHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEE--SSS
T ss_pred EEcCChHHh-------HHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEE--Ecc
Confidence 877642221 23466777999999999997533 11223344333 335555554 235
Q ss_pred ceEEEEEec
Q 044932 677 EGILCAQKT 685 (689)
Q Consensus 677 E~iL~~~K~ 685 (689)
+++++++|+
T Consensus 212 dG~~~~~k~ 220 (242)
T 3r3h_A 212 DGMFLVQPI 220 (242)
T ss_dssp SCEEEEEEC
T ss_pred CceEEEEEc
Confidence 789999875
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.00051 Score=66.81 Aligned_cols=94 Identities=18% Similarity=0.167 Sum_probs=60.7
Q ss_pred eEEeecCCcchhHHHHhccC--CceEEEeccCCC-CCchhhhhccc-cchhhccccCCCCCCCccchhhccccccccccC
Q 044932 548 RNVMDMKSIYGGFAAALAQQ--KIWVMNVVPVHA-PDTLPVIYDRG-LVGIYHDWCESFGTYPRSYDLLHADHLFSRLKS 623 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~--~vWVMNvvp~~~-~~tL~vI~~RG-Lig~yhdwce~f~typrTyDLlHa~~lfs~~~~ 623 (689)
.+|+|+++|.|.++.+|... .. +|+-++- +..+...-.+. -+-+.+.=.+.++ .+.+||+|++..+|....+
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~ 110 (259)
T 2p35_A 35 LNGYDLGCGPGNSTELLTDRYGVN---VITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYANAVFQWVPD 110 (259)
T ss_dssp SSEEEETCTTTHHHHHHHHHHCTT---SEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEESCGGGSTT
T ss_pred CEEEEecCcCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEeCchhhCCC
Confidence 57999999999999988754 22 1222222 22333332221 0111222233445 5789999999998876642
Q ss_pred CcCCccceeeeeccccccCcEEEEeC
Q 044932 624 RCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 624 ~c~~~~~illEmDRILRP~G~~iirD 649 (689)
...+|-+|-|+|+|||+++|..
T Consensus 111 ----~~~~l~~~~~~L~pgG~l~~~~ 132 (259)
T 2p35_A 111 ----HLAVLSQLMDQLESGGVLAVQM 132 (259)
T ss_dssp ----HHHHHHHHGGGEEEEEEEEEEE
T ss_pred ----HHHHHHHHHHhcCCCeEEEEEe
Confidence 3567899999999999999974
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0019 Score=64.75 Aligned_cols=133 Identities=13% Similarity=0.231 Sum_probs=81.7
Q ss_pred eEEeecCCcchhHHHHhcc-CCceEEEeccCCCC-Cchhhhhcc----cc--ch-hhccccCCCCCCCccchhhcccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQ-QKIWVMNVVPVHAP-DTLPVIYDR----GL--VG-IYHDWCESFGTYPRSYDLLHADHLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~-~~vWVMNvvp~~~~-~tL~vI~~R----GL--ig-~yhdwce~f~typrTyDLlHa~~lf 618 (689)
..|+|+++|.|.++.+|.. .+-+ +|+-++-. ..|.+.-.+ |+ |- +..|+.+.++ +.+||+|-++--|
T Consensus 111 ~~vLDlG~GsG~~~~~la~~~~~~--~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~--~~~fD~Iv~npPy 186 (276)
T 2b3t_A 111 CRILDLGTGTGAIALALASERPDC--EIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA--GQQFAMIVSNPPY 186 (276)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTTS--EEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT--TCCEEEEEECCCC
T ss_pred CEEEEecCCccHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcc--cCCccEEEECCCC
Confidence 4699999999999998873 2322 34444432 233322221 32 22 2235555443 5789999987433
Q ss_pred ccc------------cCCc---------CCccceeeeeccccccCcEEEEeCchhhHHHHHHHHhhcceeE-E-EeecCC
Q 044932 619 SRL------------KSRC---------RQPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGILRSLHWEI-R-MTYAQD 675 (689)
Q Consensus 619 s~~------------~~~c---------~~~~~illEmDRILRP~G~~iirD~~~~l~~v~~i~~~lrW~~-~-~~~~~~ 675 (689)
... .... ..+..++-++-|+|+|||++++-....-...++.++....|.. . ..|..+
T Consensus 187 ~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~v~~~~d~~g 266 (276)
T 2b3t_A 187 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDYGD 266 (276)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEECTTS
T ss_pred CCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCcEEEEEecCCC
Confidence 221 1110 0124567788999999999999876666677778777666642 2 335566
Q ss_pred CceEEEEEe
Q 044932 676 KEGILCAQK 684 (689)
Q Consensus 676 ~E~iL~~~K 684 (689)
.+++++++|
T Consensus 267 ~~r~~~~~~ 275 (276)
T 2b3t_A 267 NERVTLGRY 275 (276)
T ss_dssp SEEEEEEEC
T ss_pred CCcEEEEEE
Confidence 789998875
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0019 Score=67.89 Aligned_cols=135 Identities=17% Similarity=0.268 Sum_probs=84.9
Q ss_pred CCCCeeEEeecCCcchhHHHHhccC--CceEEEeccCCCCCchh----hhhccccch----hhccccCCCCCCCccchhh
Q 044932 543 DWSKIRNVMDMKSIYGGFAAALAQQ--KIWVMNVVPVHAPDTLP----VIYDRGLVG----IYHDWCESFGTYPRSYDLL 612 (689)
Q Consensus 543 ~~~~iRNvmDMna~~GgFAAal~~~--~vWVMNvvp~~~~~tL~----vI~~RGLig----~yhdwce~f~typrTyDLl 612 (689)
++.....|+|+++|.|.++.+|.+. .+-+ +-++-|..+. .+.+.|+-+ +-+|..+ .+|..||+|
T Consensus 199 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~---~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~---~~p~~~D~v 272 (369)
T 3gwz_A 199 DFSGAATAVDIGGGRGSLMAAVLDAFPGLRG---TLLERPPVAEEARELLTGRGLADRCEILPGDFFE---TIPDGADVY 272 (369)
T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHHCTTCEE---EEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTT---CCCSSCSEE
T ss_pred CCccCcEEEEeCCCccHHHHHHHHHCCCCeE---EEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCC---CCCCCceEE
Confidence 3456789999999999999999753 2222 2222222222 122234322 2234443 455589999
Q ss_pred ccccccccccCCcCCccceeeeeccccccCcEEEEeCch------------h------------hHHHHHHHHhhcceeE
Q 044932 613 HADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKV------------E------------ILDPLEGILRSLHWEI 668 (689)
Q Consensus 613 Ha~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~------------~------------~l~~v~~i~~~lrW~~ 668 (689)
.+.++|..+.+.-. ..+|-++=|+|+|||.++|-|.. + ....++.++..-.|..
T Consensus 273 ~~~~vlh~~~d~~~--~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 350 (369)
T 3gwz_A 273 LIKHVLHDWDDDDV--VRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRV 350 (369)
T ss_dssp EEESCGGGSCHHHH--HHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEE
T ss_pred EhhhhhccCCHHHH--HHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeE
Confidence 99999977754321 24788999999999999996521 1 1455677777777775
Q ss_pred EEe-e-cCCCceEEEEEec
Q 044932 669 RMT-Y-AQDKEGILCAQKT 685 (689)
Q Consensus 669 ~~~-~-~~~~E~iL~~~K~ 685 (689)
.-. . ......|+.|+|.
T Consensus 351 ~~~~~~~~~~~svie~~~a 369 (369)
T 3gwz_A 351 ERSLPCGAGPVRIVEIRRA 369 (369)
T ss_dssp EEEEECSSSSEEEEEEEEC
T ss_pred EEEEECCCCCcEEEEEEeC
Confidence 433 3 3445678888763
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0021 Score=65.14 Aligned_cols=112 Identities=13% Similarity=0.136 Sum_probs=71.7
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhh----hccccch---hhccccCCCCCCCccchhhccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVI----YDRGLVG---IYHDWCESFGTYPRSYDLLHADHLFS 619 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI----~~RGLig---~yhdwce~f~typrTyDLlHa~~lfs 619 (689)
..|+|+.+|.|+|+..|....-- .|+-++.. ..+... -..|+-. +++.=+..+.. +.+||+|.++..++
T Consensus 127 ~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p~~ 203 (278)
T 2frn_A 127 ELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYVVR 203 (278)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCCSS
T ss_pred CEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCchh
Confidence 46999999999999888653211 24444432 222221 1224432 22222233333 67899997765432
Q ss_pred cccCCcCCccceeeeeccccccCcEEEEeCch-------hhHHHHHHHHhhcceeEEE
Q 044932 620 RLKSRCRQPVSIVVEMDRILRPGGWAIVRDKV-------EILDPLEGILRSLHWEIRM 670 (689)
Q Consensus 620 ~~~~~c~~~~~illEmDRILRP~G~~iirD~~-------~~l~~v~~i~~~lrW~~~~ 670 (689)
. ..++-++-|+|+|||++++-+.. +.+..+...+....|++..
T Consensus 204 ~--------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 204 T--------HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp G--------GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred H--------HHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence 2 34677888999999999996543 5778899999999998876
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.00074 Score=70.79 Aligned_cols=98 Identities=12% Similarity=0.212 Sum_probs=62.9
Q ss_pred CeeEEeecCCcchhHHHHhcc--CCceEEEeccCCCCCchhhh----hccccch----hhccccCCCCCCCccchhhccc
Q 044932 546 KIRNVMDMKSIYGGFAAALAQ--QKIWVMNVVPVHAPDTLPVI----YDRGLVG----IYHDWCESFGTYPRSYDLLHAD 615 (689)
Q Consensus 546 ~iRNvmDMna~~GgFAAal~~--~~vWVMNvvp~~~~~tL~vI----~~RGLig----~yhdwce~f~typrTyDLlHa~ 615 (689)
..+.|+|+++|.|.++.+|.. ..+ .|+-++-|..+... -+.|+-+ +-+|..+.-..+|.+||+|.+.
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~ 255 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEV---EVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMS 255 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTC---EEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCC---EEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEe
Confidence 467899999999999999975 232 12222223333222 2234322 1223222100367899999999
Q ss_pred cccccccCC-cCCccceeeeeccccccCcEEEEeC
Q 044932 616 HLFSRLKSR-CRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 616 ~lfs~~~~~-c~~~~~illEmDRILRP~G~~iirD 649 (689)
.+|..|.+. |. .||-++=|+|+|||.++|-|
T Consensus 256 ~vlh~~~~~~~~---~~l~~~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 256 QFLDCFSEEEVI---SILTRVAQSIGKDSKVYIME 287 (363)
T ss_dssp SCSTTSCHHHHH---HHHHHHHHHCCTTCEEEEEE
T ss_pred chhhhCCHHHHH---HHHHHHHHhcCCCcEEEEEe
Confidence 999877643 33 47889999999999998865
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0075 Score=56.25 Aligned_cols=125 Identities=14% Similarity=0.081 Sum_probs=79.0
Q ss_pred EEeecCCcchhHHHHhccCCceEEEeccCCCC-CchhhhhccccchhhccccCCCCCCCccchhhccccccccccCC---
Q 044932 549 NVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDRGLVGIYHDWCESFGTYPRSYDLLHADHLFSRLKSR--- 624 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~RGLig~yhdwce~f~typrTyDLlHa~~lfs~~~~~--- 624 (689)
.|+|+++|.|.++.+|.... +|+-++-. ..+.. ...+--+..|..+.+ -+.+||+|-++..|-.....
T Consensus 26 ~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~--~~~~~~~~~d~~~~~--~~~~fD~i~~n~~~~~~~~~~~~ 97 (170)
T 3q87_B 26 IVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES--HRGGNLVRADLLCSI--NQESVDVVVFNPPYVPDTDDPII 97 (170)
T ss_dssp EEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT--CSSSCEEECSTTTTB--CGGGCSEEEECCCCBTTCCCTTT
T ss_pred eEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc--ccCCeEEECChhhhc--ccCCCCEEEECCCCccCCccccc
Confidence 79999999999999998875 56665543 22222 122222223333332 23899999998777643322
Q ss_pred ---cCCccceeeeeccccccCcEEEEeC-chhhHHHHHHHHhhcceeEEEe--ecCCCceEEEEE
Q 044932 625 ---CRQPVSIVVEMDRILRPGGWAIVRD-KVEILDPLEGILRSLHWEIRMT--YAQDKEGILCAQ 683 (689)
Q Consensus 625 ---c~~~~~illEmDRILRP~G~~iirD-~~~~l~~v~~i~~~lrW~~~~~--~~~~~E~iL~~~ 683 (689)
... ..++-++=|.| |||.+++-. ...-...+..++....|..... ....-|.+++..
T Consensus 98 ~~~~~~-~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~~~~~e~~~~~~ 160 (170)
T 3q87_B 98 GGGYLG-REVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKVRKILGETVYIIK 160 (170)
T ss_dssp BCCGGG-CHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEEECSSSEEEEEE
T ss_pred cCCcch-HHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEeeccCCceEEEEE
Confidence 111 23455555666 999999865 4456788888888888887544 334556766654
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.00063 Score=65.18 Aligned_cols=126 Identities=16% Similarity=0.176 Sum_probs=72.0
Q ss_pred eEEeecCCcchhHHHHhccC---CceEEEeccCCCC-Cchhh----hhccccch---hh-ccccCCCCCCC-----ccch
Q 044932 548 RNVMDMKSIYGGFAAALAQQ---KIWVMNVVPVHAP-DTLPV----IYDRGLVG---IY-HDWCESFGTYP-----RSYD 610 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~---~vWVMNvvp~~~~-~tL~v----I~~RGLig---~y-hdwce~f~typ-----rTyD 610 (689)
.+|+|+++|.|.++..|... .. .|+-++.. ..+.. +-..|+-. ++ .|..+.++.++ .+||
T Consensus 66 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 66 KKVIDIGTFTGYSAIAMGLALPKDG---TLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred CEEEEeCCcchHHHHHHHHhCCCCC---EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 47999999999999999764 22 23333321 22222 11223321 11 13333333333 7899
Q ss_pred hhccccccccccCCcCCccceeeeeccccccCcEEEEeCchh------------hHHHHHHHH----hhcceeEEEeecC
Q 044932 611 LLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVE------------ILDPLEGIL----RSLHWEIRMTYAQ 674 (689)
Q Consensus 611 LlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~~------------~l~~v~~i~----~~lrW~~~~~~~~ 674 (689)
+|..++-.. . ...++-++=|+|+|||++++.|-.- ....++.+. ..-+|.+.+. .
T Consensus 143 ~v~~~~~~~------~-~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l--p 213 (225)
T 3tr6_A 143 LIYIDADKA------N-TDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMILI--P 213 (225)
T ss_dssp EEEECSCGG------G-HHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEE--C
T ss_pred EEEECCCHH------H-HHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEEEEE--E
Confidence 998665322 1 1345667779999999999986431 122333333 3345766655 2
Q ss_pred CCceEEEEEec
Q 044932 675 DKEGILCAQKT 685 (689)
Q Consensus 675 ~~E~iL~~~K~ 685 (689)
...++++++|+
T Consensus 214 ~~dG~~~~~k~ 224 (225)
T 3tr6_A 214 IGDGLTLARKK 224 (225)
T ss_dssp STTCEEEEEEC
T ss_pred cCCccEEEEEC
Confidence 34689999885
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.00061 Score=64.11 Aligned_cols=97 Identities=12% Similarity=0.126 Sum_probs=59.5
Q ss_pred eEEeecCCcchhH-HHHhccCCceEEEeccCCCC-Cchhhhhc----ccc-chhhccccCCCCCCCccchhhcccccccc
Q 044932 548 RNVMDMKSIYGGF-AAALAQQKIWVMNVVPVHAP-DTLPVIYD----RGL-VGIYHDWCESFGTYPRSYDLLHADHLFSR 620 (689)
Q Consensus 548 RNvmDMna~~GgF-AAal~~~~vWVMNvvp~~~~-~tL~vI~~----RGL-ig~yhdwce~f~typrTyDLlHa~~lfs~ 620 (689)
..|+|+++|.|.+ ++.+..... +|+-++.. ..+...-. .|. +-+.+.=.+.++.-+.+||+|.+.++|..
T Consensus 25 ~~vLDiGcG~G~~~~~~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 101 (209)
T 2p8j_A 25 KTVLDCGAGGDLPPLSIFVEDGY---KTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFH 101 (209)
T ss_dssp SEEEEESCCSSSCTHHHHHHTTC---EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGGG
T ss_pred CEEEEECCCCCHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHHh
Confidence 4799999999998 444444443 34444432 22222221 121 12222222334544689999999888766
Q ss_pred ccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 621 LKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 621 ~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
.. .-. ...+|-++-|+|+|||.+++.+
T Consensus 102 ~~-~~~-~~~~l~~~~~~LkpgG~l~~~~ 128 (209)
T 2p8j_A 102 MR-KND-VKEAIDEIKRVLKPGGLACINF 128 (209)
T ss_dssp SC-HHH-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC-HHH-HHHHHHHHHHHcCCCcEEEEEE
Confidence 52 223 3567899999999999999975
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.00099 Score=66.44 Aligned_cols=115 Identities=17% Similarity=0.243 Sum_probs=72.3
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhh----hcccc-chhh-ccccCCCCCCCccchhhcccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVI----YDRGL-VGIY-HDWCESFGTYPRSYDLLHADHLFSR 620 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI----~~RGL-ig~y-hdwce~f~typrTyDLlHa~~lfs~ 620 (689)
..|+|+++|.|.++..|..... +|+-++-. ..+... -..|+ |-++ .|.. .++. +.+||+|.+..+|..
T Consensus 122 ~~vLD~GcG~G~~~~~l~~~g~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~-~~~fD~i~~~~~~~~ 196 (286)
T 3m70_A 122 CKVLDLGCGQGRNSLYLSLLGY---DVTSWDHNENSIAFLNETKEKENLNISTALYDIN-AANI-QENYDFIVSTVVFMF 196 (286)
T ss_dssp CEEEEESCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGG-GCCC-CSCEEEEEECSSGGG
T ss_pred CcEEEECCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHcCCceEEEEeccc-cccc-cCCccEEEEccchhh
Confidence 4699999999999999987753 45555432 223222 22343 1111 2322 2333 889999999999876
Q ss_pred ccCCcCCccceeeeeccccccCcEEEEeCc--------------hhhHHHHHHHHhhcceeEEEe
Q 044932 621 LKSRCRQPVSIVVEMDRILRPGGWAIVRDK--------------VEILDPLEGILRSLHWEIRMT 671 (689)
Q Consensus 621 ~~~~c~~~~~illEmDRILRP~G~~iirD~--------------~~~l~~v~~i~~~lrW~~~~~ 671 (689)
... -. +..+|-+|-|+|+|||.++|-.. .-....++.+... |++...
T Consensus 197 ~~~-~~-~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ 257 (286)
T 3m70_A 197 LNR-ER-VPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEY 257 (286)
T ss_dssp SCG-GG-HHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEE
T ss_pred CCH-HH-HHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEE
Confidence 532 23 24688899999999999776421 1124466666666 776443
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0006 Score=67.52 Aligned_cols=99 Identities=16% Similarity=0.105 Sum_probs=61.6
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhc----ccc---chhhccccCCCCC-CCccchhhcccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYD----RGL---VGIYHDWCESFGT-YPRSYDLLHADHLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~----RGL---ig~yhdwce~f~t-yprTyDLlHa~~lf 618 (689)
..|||+++|.|.++..|...+.. +|+-++-. ..+...-. .|+ |-+.+.=++.++. -+.+||+|.+.++|
T Consensus 66 ~~vLDiGcG~G~~~~~l~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 143 (298)
T 1ri5_A 66 DSVLDLGCGKGGDLLKYERAGIG--EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF 143 (298)
T ss_dssp CEEEEETCTTTTTHHHHHHHTCS--EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred CeEEEECCCCCHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECchh
Confidence 47999999999999888765421 23333332 22222222 232 2222322333333 46799999998887
Q ss_pred ccc-cCCcCCccceeeeeccccccCcEEEEeC
Q 044932 619 SRL-KSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 619 s~~-~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
... .+.-. ...+|-++-|+|+|||.++|..
T Consensus 144 ~~~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~ 174 (298)
T 1ri5_A 144 HYAFSTSES-LDIAQRNIARHLRPGGYFIMTV 174 (298)
T ss_dssp GGGGSSHHH-HHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhhcCCHHH-HHHHHHHHHHhcCCCCEEEEEE
Confidence 531 22233 3568899999999999999875
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0017 Score=60.30 Aligned_cols=133 Identities=14% Similarity=0.055 Sum_probs=73.0
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhh----hcccc--chhhccccCCCCC-CCccchhhccc-ccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVI----YDRGL--VGIYHDWCESFGT-YPRSYDLLHAD-HLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI----~~RGL--ig~yhdwce~f~t-yprTyDLlHa~-~lf 618 (689)
..|+|+++|.|.++..|..... +|+-++-. .-|... -..|+ |-+.++-.+.+.. .+.+||+|.++ +.+
T Consensus 24 ~~vLDiGcG~G~~~~~la~~~~---~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~ 100 (185)
T 3mti_A 24 SIVVDATMGNGNDTAFLAGLSK---KVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYL 100 (185)
T ss_dssp CEEEESCCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC--
T ss_pred CEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCC
Confidence 3699999999999999987632 34444432 233222 22344 3344444444332 36789999665 333
Q ss_pred cccc-----CCcCCccceeeeeccccccCcEEEEeCc------hhhHHHHHHHHhhcc---eeEEEee---c-CCCceEE
Q 044932 619 SRLK-----SRCRQPVSIVVEMDRILRPGGWAIVRDK------VEILDPLEGILRSLH---WEIRMTY---A-QDKEGIL 680 (689)
Q Consensus 619 s~~~-----~~c~~~~~illEmDRILRP~G~~iirD~------~~~l~~v~~i~~~lr---W~~~~~~---~-~~~E~iL 680 (689)
.... ..-. ...+|-++-|+|+|||.+++-.- .+-...+..++..+. |.+.... . .....++
T Consensus 101 ~~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 179 (185)
T 3mti_A 101 PSADKSVITKPHT-TLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQINTPPFLV 179 (185)
T ss_dssp ---------CHHH-HHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESSCSSCCCEEE
T ss_pred CCcchhcccChhh-HHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhccCCCCCeEE
Confidence 2100 0011 12456788899999999988531 223445555555554 7764431 2 2334555
Q ss_pred EEEe
Q 044932 681 CAQK 684 (689)
Q Consensus 681 ~~~K 684 (689)
+..|
T Consensus 180 ~i~~ 183 (185)
T 3mti_A 180 MLEK 183 (185)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5555
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0016 Score=66.50 Aligned_cols=93 Identities=11% Similarity=-0.082 Sum_probs=51.5
Q ss_pred CeEEEECCccchhHHHhhc--CCeEEEEcCCcccH--HHHHHHHHHc----C-C--CcEEecCCCCC-CCCCCCCcceEE
Q 044932 310 RVVLEIGSADLSFVASLLA--KEVLTLTVGLKDDL--VDLAQVALER----G-F--PAVVSPLGNRR-LPFPSGVFDAIH 377 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~--~~V~gmDIsp~D~s--eamlq~A~eR----G-L--~~i~~~~dt~~-LPFpD~SFDlVh 377 (689)
.+|||+|||+|..+..|+. ..|+++|+++.... ...++.+..+ + + ...+...|... |+....+||+|+
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDvV~ 169 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY 169 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEEE
T ss_pred CEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCEEE
Confidence 6899999999998887774 46999999884211 1122222211 1 1 12233344333 442224799999
Q ss_pred eccccccccccHHHHHHHHHhccCCCc
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSG 404 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG 404 (689)
+.-.. ++ .....++.+..|+||+.+
T Consensus 170 lDP~y-~~-~~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 170 LDPMF-PH-KQKSALVKKEMRVFQSLV 194 (258)
T ss_dssp ECCCC-CC-CCC-----HHHHHHHHHS
T ss_pred EcCCC-CC-cccchHHHHHHHHHHHhh
Confidence 75322 22 222356778888888866
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.00032 Score=67.55 Aligned_cols=96 Identities=17% Similarity=0.223 Sum_probs=60.1
Q ss_pred eEEeecCCcchhHHHHhccC--CceEEEeccCCC-CCchhhhhcc----ccchhhccccCCCCCCCccchhhcccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ--KIWVMNVVPVHA-PDTLPVIYDR----GLVGIYHDWCESFGTYPRSYDLLHADHLFSR 620 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~--~vWVMNvvp~~~-~~tL~vI~~R----GLig~yhdwce~f~typrTyDLlHa~~lfs~ 620 (689)
..|+|+++|.|.++.+|... .. +|+-++- +..+...-.+ |-|-+.+.=.+.++ ++.+||+|.+..+|..
T Consensus 46 ~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~ 121 (234)
T 3dtn_A 46 PDILDLGAGTGLLSAFLMEKYPEA---TFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYD-FEEKYDMVVSALSIHH 121 (234)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCC-CCSCEEEEEEESCGGG
T ss_pred CeEEEecCCCCHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccC-CCCCceEEEEeCcccc
Confidence 67999999999999998764 22 2333332 2222222222 11112221122222 3389999999998887
Q ss_pred ccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 621 LKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 621 ~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
..+.-. ..+|-++-|+|+|||.++|.|
T Consensus 122 ~~~~~~--~~~l~~~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 122 LEDEDK--KELYKRSYSILKESGIFINAD 148 (234)
T ss_dssp SCHHHH--HHHHHHHHHHEEEEEEEEEEE
T ss_pred CCHHHH--HHHHHHHHHhcCCCcEEEEEE
Confidence 642211 247889999999999999976
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0039 Score=61.81 Aligned_cols=120 Identities=17% Similarity=0.171 Sum_probs=77.2
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhh----hhcccc---chhhc-cccCCCCCC-Cccchhhccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPV----IYDRGL---VGIYH-DWCESFGTY-PRSYDLLHADHL 617 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~v----I~~RGL---ig~yh-dwce~f~ty-prTyDLlHa~~l 617 (689)
..|+|+++|.|.++..|....-. +|+-++-. ..+.. +...|+ |-+++ |..+....+ +.+||+|-++--
T Consensus 51 ~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npP 128 (259)
T 3lpm_A 51 GKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPP 128 (259)
T ss_dssp CEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCC
T ss_pred CEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCC
Confidence 47999999999999998876433 45555542 22221 122243 22222 333332223 589999999755
Q ss_pred cccc-----------------cCCcCCccceeeeeccccccCcEEEEeCchhhHHHHHHHHhhcceeEEE
Q 044932 618 FSRL-----------------KSRCRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGILRSLHWEIRM 670 (689)
Q Consensus 618 fs~~-----------------~~~c~~~~~illEmDRILRP~G~~iirD~~~~l~~v~~i~~~lrW~~~~ 670 (689)
|... ...+. +..++-++-|+|+|||.+++--..+-+..+..++....|....
T Consensus 129 y~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~~ 197 (259)
T 3lpm_A 129 YFATPDTSLKNTNEHFRIARHEVMCT-LEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPKR 197 (259)
T ss_dssp C-----------------------HH-HHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEEE
T ss_pred CCCCccccCCCCchHHHhhhccccCC-HHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCceEE
Confidence 4322 11244 3678889999999999999976677888888888888887643
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0023 Score=63.40 Aligned_cols=129 Identities=13% Similarity=0.122 Sum_probs=75.3
Q ss_pred eeEEeecCCcchhHHHHhccC---CceEEEeccCCC-CCchhhhhc----cccch----hhccccCCCCCCCc--cchhh
Q 044932 547 IRNVMDMKSIYGGFAAALAQQ---KIWVMNVVPVHA-PDTLPVIYD----RGLVG----IYHDWCESFGTYPR--SYDLL 612 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~---~vWVMNvvp~~~-~~tL~vI~~----RGLig----~yhdwce~f~typr--TyDLl 612 (689)
-++|+|+++|.|+++.+|... .. .|+-++- +..+...-. .|+-. +..|..+.++..+. +||+|
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARELPADG---QLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred CCEEEEecCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 468999999999999998764 21 2333332 233332222 24321 12344443444444 89999
Q ss_pred ccccccccccCCcCCccceeeeeccccccCcEEEEeCchh------------hHHHHHHHH----hhcceeEEEeec---
Q 044932 613 HADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVE------------ILDPLEGIL----RSLHWEIRMTYA--- 673 (689)
Q Consensus 613 Ha~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~~------------~l~~v~~i~----~~lrW~~~~~~~--- 673 (689)
.+++-... ...+|-++=|+|||||++++.|-.- ....++.+. ..-+|.+.+...
T Consensus 141 ~~d~~~~~-------~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~ 213 (248)
T 3tfw_A 141 FIDADKPN-------NPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATALQTVGT 213 (248)
T ss_dssp EECSCGGG-------HHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEECST
T ss_pred EECCchHH-------HHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEeecCCC
Confidence 87663221 1345667789999999999986431 223333333 444676655421
Q ss_pred CCCceEEEEEec
Q 044932 674 QDKEGILCAQKT 685 (689)
Q Consensus 674 ~~~E~iL~~~K~ 685 (689)
...+++++|+|+
T Consensus 214 ~~~DG~~i~~~~ 225 (248)
T 3tfw_A 214 KGWDGFTLAWVN 225 (248)
T ss_dssp TCSEEEEEEEEC
T ss_pred CCCCeeEEEEEe
Confidence 235789999875
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.00085 Score=64.34 Aligned_cols=128 Identities=15% Similarity=0.127 Sum_probs=72.6
Q ss_pred eEEeecCCcchhHHHHhccC---CceEEEeccCCC-CCchhhh----hccccch---hh-ccccCCCCCCC----ccchh
Q 044932 548 RNVMDMKSIYGGFAAALAQQ---KIWVMNVVPVHA-PDTLPVI----YDRGLVG---IY-HDWCESFGTYP----RSYDL 611 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~---~vWVMNvvp~~~-~~tL~vI----~~RGLig---~y-hdwce~f~typ----rTyDL 611 (689)
.+|+|+++|.|+++.+|... .. .|+-++- +..+... -..|+-. +. .|..+.++.++ .+||+
T Consensus 60 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 60 RNILEIGTLGGYSTIWLARGLSSGG---RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCSSC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred CEEEEecCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 57999999999999998764 22 2444432 2223222 1224321 11 22223222222 57999
Q ss_pred hccccccccccCCcCCccceeeeeccccccCcEEEEeCchh------------hHHHHHHHH----hhcceeEEEee---
Q 044932 612 LHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVE------------ILDPLEGIL----RSLHWEIRMTY--- 672 (689)
Q Consensus 612 lHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~~------------~l~~v~~i~----~~lrW~~~~~~--- 672 (689)
|..++.... ...+|-++-|+|||||++++.+-.- ....++.+. ..-+|.+.+.-
T Consensus 137 v~~d~~~~~-------~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~ 209 (223)
T 3duw_A 137 IFIDADKQN-------NPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATALQTVG 209 (223)
T ss_dssp EEECSCGGG-------HHHHHHHHHHTCCTTCEEEEESCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEEE
T ss_pred EEEcCCcHH-------HHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEeccC
Confidence 987765332 2346777889999999999975332 122333333 34456665542
Q ss_pred cCCCceEEEEEec
Q 044932 673 AQDKEGILCAQKT 685 (689)
Q Consensus 673 ~~~~E~iL~~~K~ 685 (689)
..+.+++++|+++
T Consensus 210 ~~~~dG~~~~~~~ 222 (223)
T 3duw_A 210 SKGYDGFIMAVVK 222 (223)
T ss_dssp TTEEEEEEEEEEC
T ss_pred CCCCCeeEEEEEe
Confidence 2335788988864
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0013 Score=68.26 Aligned_cols=98 Identities=17% Similarity=0.278 Sum_probs=62.6
Q ss_pred CCCCeeEEeecCCcchhHHHHhcc--CCceEEEeccCCCCCchh--hhhccccch----hhccccCCCCCCCccchhhcc
Q 044932 543 DWSKIRNVMDMKSIYGGFAAALAQ--QKIWVMNVVPVHAPDTLP--VIYDRGLVG----IYHDWCESFGTYPRSYDLLHA 614 (689)
Q Consensus 543 ~~~~iRNvmDMna~~GgFAAal~~--~~vWVMNvvp~~~~~tL~--vI~~RGLig----~yhdwce~f~typrTyDLlHa 614 (689)
++.....|+|+++|.|.++.+|.. ..+-+ +-++-+..+. .+-..|+-+ +-+|.. ...| +||+|.+
T Consensus 181 ~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~---~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~---~~~p-~~D~v~~ 253 (348)
T 3lst_A 181 DFPATGTVADVGGGRGGFLLTVLREHPGLQG---VLLDRAEVVARHRLDAPDVAGRWKVVEGDFL---REVP-HADVHVL 253 (348)
T ss_dssp CCCSSEEEEEETCTTSHHHHHHHHHCTTEEE---EEEECHHHHTTCCCCCGGGTTSEEEEECCTT---TCCC-CCSEEEE
T ss_pred CccCCceEEEECCccCHHHHHHHHHCCCCEE---EEecCHHHhhcccccccCCCCCeEEEecCCC---CCCC-CCcEEEE
Confidence 345678999999999999999975 23322 2222121000 011123322 223433 3456 9999999
Q ss_pred ccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 615 DHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 615 ~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
.++|..+.+.-. ..+|-++=|+|+|||.++|-|
T Consensus 254 ~~vlh~~~d~~~--~~~L~~~~~~LkpgG~l~i~e 286 (348)
T 3lst_A 254 KRILHNWGDEDS--VRILTNCRRVMPAHGRVLVID 286 (348)
T ss_dssp ESCGGGSCHHHH--HHHHHHHHHTCCTTCEEEEEE
T ss_pred ehhccCCCHHHH--HHHHHHHHHhcCCCCEEEEEE
Confidence 999988765321 258999999999999999965
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.00095 Score=63.44 Aligned_cols=97 Identities=20% Similarity=0.227 Sum_probs=60.2
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhcc----c--cchhhccccCCCCCCCccchhhcccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDR----G--LVGIYHDWCESFGTYPRSYDLLHADHLFSR 620 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~R----G--Lig~yhdwce~f~typrTyDLlHa~~lfs~ 620 (689)
..|+|+++|.|.++..|....- +|+-++- +..+...-.+ | +--+..|..+ ++.-+.+||+|.+..++..
T Consensus 40 ~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 40 GKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARK-LSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTS-CCSCTTCEEEEEEESCGGG
T ss_pred CeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhc-CCCCCCcEEEEEEcCchHh
Confidence 4799999999999999876643 3444443 2222222221 1 1112223332 3433579999999887443
Q ss_pred ccCCcCCccceeeeeccccccCcEEEEeCc
Q 044932 621 LKSRCRQPVSIVVEMDRILRPGGWAIVRDK 650 (689)
Q Consensus 621 ~~~~c~~~~~illEmDRILRP~G~~iirD~ 650 (689)
+.. -+ ...+|-++-|+|+|||.+++-+.
T Consensus 116 ~~~-~~-~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 116 FEP-LE-LNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp CCH-HH-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCH-HH-HHHHHHHHHHHcCCCcEEEEEec
Confidence 321 12 24578899999999999998754
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=96.08 E-value=0.00099 Score=64.32 Aligned_cols=129 Identities=16% Similarity=0.143 Sum_probs=74.9
Q ss_pred eeEEeecCCcchhHHHHhccC--CceEEEeccCCCC-Cchhhhh----ccccch---h-hccccCCCCCCC-----ccch
Q 044932 547 IRNVMDMKSIYGGFAAALAQQ--KIWVMNVVPVHAP-DTLPVIY----DRGLVG---I-YHDWCESFGTYP-----RSYD 610 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~--~vWVMNvvp~~~~-~tL~vI~----~RGLig---~-yhdwce~f~typ-----rTyD 610 (689)
-++|+|+++|.|.++..|... +-. .|+-++.. ..+.+.- ..|+-. + ..|..+.++.++ .+||
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLLQPGA--RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTC--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCC--EEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 468999999999999988762 111 23333332 2232221 224321 1 224444455555 6999
Q ss_pred hhccccccccccCCcCCccceeeeeccccccCcEEEEeCch-----hhHHHHHHHHhhcceeEEEee-----cCCCceEE
Q 044932 611 LLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKV-----EILDPLEGILRSLHWEIRMTY-----AQDKEGIL 680 (689)
Q Consensus 611 LlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~-----~~l~~v~~i~~~lrW~~~~~~-----~~~~E~iL 680 (689)
+|..++....+.. ...++.++ |+|+|||.+++.|-. +++..++ ..=++.+.+.. ....+++.
T Consensus 137 ~V~~d~~~~~~~~----~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~dG~~ 208 (221)
T 3u81_A 137 MVFLDHWKDRYLP----DTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVR---GSSSFECTHYSSYLEYMKVVDGLE 208 (221)
T ss_dssp EEEECSCGGGHHH----HHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHH---HCTTEEEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCcccchH----HHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHh---hCCCceEEEcccccccCCCCCceE
Confidence 9988876655421 12345567 999999999998643 3444333 33356665542 12246788
Q ss_pred EEEec
Q 044932 681 CAQKT 685 (689)
Q Consensus 681 ~~~K~ 685 (689)
++++.
T Consensus 209 ~~~~~ 213 (221)
T 3u81_A 209 KAIYQ 213 (221)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 87763
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0036 Score=56.94 Aligned_cols=109 Identities=11% Similarity=0.079 Sum_probs=71.8
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhh----cccc--ch-hhccccCCCCCCCccchhhccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIY----DRGL--VG-IYHDWCESFGTYPRSYDLLHADHLFS 619 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~----~RGL--ig-~yhdwce~f~typrTyDLlHa~~lfs 619 (689)
..|+|+++|.|.++.+|..... +|+-++- +..+...- ..|+ +- +..|+.+.|+. .+||+|.+++.
T Consensus 37 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~--~~~D~i~~~~~-- 109 (183)
T 2yxd_A 37 DVVVDVGCGSGGMTVEIAKRCK---FVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDK--LEFNKAFIGGT-- 109 (183)
T ss_dssp CEEEEESCCCSHHHHHHHTTSS---EEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGG--CCCSEEEECSC--
T ss_pred CEEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccC--CCCcEEEECCc--
Confidence 4799999999999999987332 2333332 12222221 1232 11 22344443322 58999998887
Q ss_pred cccCCcCCccceeeeeccccccCcEEEEeC-chhhHHHHHHHHhhcceeEEEe
Q 044932 620 RLKSRCRQPVSIVVEMDRILRPGGWAIVRD-KVEILDPLEGILRSLHWEIRMT 671 (689)
Q Consensus 620 ~~~~~c~~~~~illEmDRILRP~G~~iirD-~~~~l~~v~~i~~~lrW~~~~~ 671 (689)
.. +..+|-++-|+ |||.+++-+ ..+-+.++..+++...|++...
T Consensus 110 -----~~-~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 110 -----KN-IEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDAV 154 (183)
T ss_dssp -----SC-HHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred -----cc-HHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEEE
Confidence 33 36678888888 999999986 6777888888888888888765
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0019 Score=61.93 Aligned_cols=118 Identities=15% Similarity=0.135 Sum_probs=70.2
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCCC-Cchhhhh----cccc--chhh-ccccCCCC--CCCccchhhcccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-DTLPVIY----DRGL--VGIY-HDWCESFG--TYPRSYDLLHADH 616 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-~tL~vI~----~RGL--ig~y-hdwce~f~--typrTyDLlHa~~ 616 (689)
..|+|+++|.|.|+.+|... |-+ +|+-++-. ..+...- ..|+ |-++ .|+.+ ++ .-+.+||+|.++.
T Consensus 43 ~~vLDiGcG~G~~~~~la~~~p~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 43 PIHVEVGSGKGAFVSGMAKQNPDI--NYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSD-LTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTS--EEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSC-GGGTSCTTCCSEEEEES
T ss_pred CeEEEEccCcCHHHHHHHHHCCCC--CEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCCCCCCEEEEEC
Confidence 35999999999999888653 211 34444432 2332221 2233 2222 23322 33 2357899999874
Q ss_pred cccccc-----CCcCCccceeeeeccccccCcEEEEe-CchhhHHHHHHHHhhcceeEE
Q 044932 617 LFSRLK-----SRCRQPVSIVVEMDRILRPGGWAIVR-DKVEILDPLEGILRSLHWEIR 669 (689)
Q Consensus 617 lfs~~~-----~~c~~~~~illEmDRILRP~G~~iir-D~~~~l~~v~~i~~~lrW~~~ 669 (689)
.....+ .+-. ...+|-++-|+|+|||.+++. |..+....+..++....|...
T Consensus 120 ~~~~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~ 177 (214)
T 1yzh_A 120 SDPWPKKRHEKRRLT-YKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLN 177 (214)
T ss_dssp CCCCCSGGGGGGSTT-SHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred CCCccccchhhhccC-CHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeee
Confidence 321111 1112 246888999999999999997 465677777777766667653
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.002 Score=65.99 Aligned_cols=129 Identities=13% Similarity=0.151 Sum_probs=80.3
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCCCCchhhhhc----ccc----chhhccccCCCCCCCccchhhcccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAPDTLPVIYD----RGL----VGIYHDWCESFGTYPRSYDLLHADHLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~~tL~vI~~----RGL----ig~yhdwce~f~typrTyDLlHa~~lf 618 (689)
..|+|+++|.|.++.+|... |-. .++-++-+..+...-. .|+ --+-+|..+ .+|..||+|.+..+|
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~D~v~~~~vl 243 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSA--RGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQ---EVPSNGDIYLLSRII 243 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTC--EEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTT---CCCSSCSEEEEESCG
T ss_pred CEEEEeCCCchHHHHHHHHHCCCC--EEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCC---CCCCCCCEEEEchhc
Confidence 89999999999999998753 211 2222332444433222 232 112344444 367889999999999
Q ss_pred ccccCC-cCCccceeeeeccccccCcEEEEeCch-------------h------------hHHHHHHHHhhcceeEE-Ee
Q 044932 619 SRLKSR-CRQPVSIVVEMDRILRPGGWAIVRDKV-------------E------------ILDPLEGILRSLHWEIR-MT 671 (689)
Q Consensus 619 s~~~~~-c~~~~~illEmDRILRP~G~~iirD~~-------------~------------~l~~v~~i~~~lrW~~~-~~ 671 (689)
..+.+. |. .+|-++-|+|+|||.++|-|.. + ....++.++..-.+... +.
T Consensus 244 ~~~~~~~~~---~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 320 (334)
T 2ip2_A 244 GDLDEAASL---RLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIV 320 (334)
T ss_dssp GGCCHHHHH---HHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred cCCCHHHHH---HHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEEE
Confidence 877542 32 5889999999999999987521 0 13345556655566542 22
Q ss_pred ecCCCceEEEEEe
Q 044932 672 YAQDKEGILCAQK 684 (689)
Q Consensus 672 ~~~~~E~iL~~~K 684 (689)
.......|+.|+|
T Consensus 321 ~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 321 DLPMETRMIVAAR 333 (334)
T ss_dssp EETTTEEEEEEEE
T ss_pred ECCCCCEEEEEEe
Confidence 2233467888876
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.002 Score=66.88 Aligned_cols=97 Identities=14% Similarity=0.124 Sum_probs=60.7
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCCCchh----hhhcccc---chhhccccCCCCCCCccchhhcccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAPDTLP----VIYDRGL---VGIYHDWCESFGTYPRSYDLLHADHLFSR 620 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~~tL~----vI~~RGL---ig~yhdwce~f~typrTyDLlHa~~lfs~ 620 (689)
..|||+++|.|.++..+...+.- .|+-++....+. .+...|+ |-+.+.-.+.++.-+..||+|.+..++..
T Consensus 40 ~~VLDiGcGtG~ls~~la~~g~~--~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~ 117 (328)
T 1g6q_1 40 KIVLDVGCGTGILSMFAAKHGAK--HVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYF 117 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHTCCS--EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTT
T ss_pred CEEEEecCccHHHHHHHHHCCCC--EEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchhh
Confidence 47999999999998888765431 233333322222 2223354 33344333444322389999999866554
Q ss_pred ccCCcCCccceeeeeccccccCcEEEE
Q 044932 621 LKSRCRQPVSIVVEMDRILRPGGWAIV 647 (689)
Q Consensus 621 ~~~~c~~~~~illEmDRILRP~G~~ii 647 (689)
....-. +..+|-+++|+|+|||.+++
T Consensus 118 l~~~~~-~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 118 LLYESM-MDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp BSTTCC-HHHHHHHHHHHEEEEEEEES
T ss_pred cccHHH-HHHHHHHHHhhcCCCeEEEE
Confidence 444334 46788899999999999983
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0026 Score=65.75 Aligned_cols=133 Identities=22% Similarity=0.345 Sum_probs=80.9
Q ss_pred CCeeEEeecCCcchhHHHHhccC--CceEEEeccCCCCCchhhhh----ccccc----hhhccccCCCCCCCccchhhcc
Q 044932 545 SKIRNVMDMKSIYGGFAAALAQQ--KIWVMNVVPVHAPDTLPVIY----DRGLV----GIYHDWCESFGTYPRSYDLLHA 614 (689)
Q Consensus 545 ~~iRNvmDMna~~GgFAAal~~~--~vWVMNvvp~~~~~tL~vI~----~RGLi----g~yhdwce~f~typrTyDLlHa 614 (689)
..-..|+|+++|.|.++.+|... .+- ++-++-+..+...- ..|+- =+-+|+.+ .+|..||+|.+
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~---~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~D~v~~ 255 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVS---ATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFE---PLPRKADAIIL 255 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCE---EEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTS---CCSSCEEEEEE
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCE---EEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCC---CCCCCccEEEE
Confidence 34568999999999999988753 232 22222233333222 22332 12334444 35667999999
Q ss_pred ccccccccCCcCCccceeeeeccccccCcEEEEeCch--------h------------------hHHHHHHHHhhcceeE
Q 044932 615 DHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKV--------E------------------ILDPLEGILRSLHWEI 668 (689)
Q Consensus 615 ~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~--------~------------------~l~~v~~i~~~lrW~~ 668 (689)
.++|..+.+.-. ..+|-++-|+|+|||.++|-|.. . ....++.++..-.++.
T Consensus 256 ~~vl~~~~~~~~--~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 333 (360)
T 1tw3_A 256 SFVLLNWPDHDA--VRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVV 333 (360)
T ss_dssp ESCGGGSCHHHH--HHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEE
T ss_pred cccccCCCHHHH--HHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeE
Confidence 999877654211 24788999999999999987543 0 1345566666666665
Q ss_pred EEe-ecCCC-----ceEEEEEec
Q 044932 669 RMT-YAQDK-----EGILCAQKT 685 (689)
Q Consensus 669 ~~~-~~~~~-----E~iL~~~K~ 685 (689)
.-. ..... ..|+.|+|.
T Consensus 334 ~~~~~~~~~~~~~~~~~i~~~~~ 356 (360)
T 1tw3_A 334 EEVRQLPSPTIPYDLSLLVLAPA 356 (360)
T ss_dssp EEEEEEECSSSSCEEEEEEEEEC
T ss_pred EEEEeCCCCcccCccEEEEEEeC
Confidence 322 22222 567888774
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0026 Score=61.76 Aligned_cols=95 Identities=21% Similarity=0.286 Sum_probs=58.3
Q ss_pred eeEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhc----ccc-chhh-ccccCCCCCCCccchhhcccc-cc
Q 044932 547 IRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYD----RGL-VGIY-HDWCESFGTYPRSYDLLHADH-LF 618 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~----RGL-ig~y-hdwce~f~typrTyDLlHa~~-lf 618 (689)
-..|+|+++|.|.++..|..... +|+-++.. ..|...-. .|+ |-+. .|..+ ++ ++.+||+|.+.. .+
T Consensus 42 ~~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~v~~~~~~~ 116 (252)
T 1wzn_A 42 VRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLE-IA-FKNEFDAVTMFFSTI 116 (252)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGG-CC-CCSCEEEEEECSSGG
T ss_pred CCEEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhh-cc-cCCCccEEEEcCCch
Confidence 35899999999999999987753 45555432 33322221 232 1112 23322 33 468899997642 22
Q ss_pred ccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 619 SRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 619 s~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
... ..-. +..+|-++-|+|+|||.+++.
T Consensus 117 ~~~-~~~~-~~~~l~~~~~~L~pgG~li~~ 144 (252)
T 1wzn_A 117 MYF-DEED-LRKLFSKVAEALKPGGVFITD 144 (252)
T ss_dssp GGS-CHHH-HHHHHHHHHHHEEEEEEEEEE
T ss_pred hcC-CHHH-HHHHHHHHHHHcCCCeEEEEe
Confidence 222 2222 256788999999999999985
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0044 Score=62.05 Aligned_cols=157 Identities=18% Similarity=0.086 Sum_probs=86.2
Q ss_pred hhhHHHHHHHHHhhhcccCCCCCCeeEEeecCCcchhHHHHhccC-CceEEEeccCCCC-Cchh----hhhcccc--chh
Q 044932 523 SDTRHWKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-DTLP----VIYDRGL--VGI 594 (689)
Q Consensus 523 ~D~~~W~~~v~~~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-~tL~----vI~~RGL--ig~ 594 (689)
.....|.+++-.+......+....-..|+|+++|.|.++.+|... +-+ .|+-++.. .-+. .+-.-|| |=+
T Consensus 57 ~~~~~~~~~~~ds~~~l~~~~~~~~~~vLDiG~G~G~~~i~la~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~l~~v~~ 134 (249)
T 3g89_A 57 GEEEVVVKHFLDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIVRPEL--ELVLVDATRKKVAFVERAIEVLGLKGARA 134 (249)
T ss_dssp CHHHHHHHHHHHHHGGGGSSCCCSSCEEEEETCTTTTTHHHHHHHCTTC--EEEEEESCHHHHHHHHHHHHHHTCSSEEE
T ss_pred CHHHHhhceeeechhhhcccccCCCCEEEEEcCCCCHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHhCCCceEE
Confidence 344677776654332111111123457999999999887776532 222 23333322 2221 2222354 333
Q ss_pred hccccCCCC---CCCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeCc---hhhHHHHHHHHhhcceeE
Q 044932 595 YHDWCESFG---TYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDK---VEILDPLEGILRSLHWEI 668 (689)
Q Consensus 595 yhdwce~f~---typrTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~---~~~l~~v~~i~~~lrW~~ 668 (689)
+|.-.+.++ .++.+||+|-+..+ .. +..++-++-|+|+|||.+++-.. .+-+..+...+..+.|..
T Consensus 135 ~~~d~~~~~~~~~~~~~fD~I~s~a~-------~~-~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~ 206 (249)
T 3g89_A 135 LWGRAEVLAREAGHREAYARAVARAV-------AP-LCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRL 206 (249)
T ss_dssp EECCHHHHTTSTTTTTCEEEEEEESS-------CC-HHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEE
T ss_pred EECcHHHhhcccccCCCceEEEECCc-------CC-HHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeE
Confidence 343334333 35689999987654 23 25677789999999998887543 445566666667777775
Q ss_pred EEee---c--CCCc-eEEEEEeccCCC
Q 044932 669 RMTY---A--QDKE-GILCAQKTMWRP 689 (689)
Q Consensus 669 ~~~~---~--~~~E-~iL~~~K~~w~p 689 (689)
.-.. . .+.+ .+++.+|.-.+|
T Consensus 207 ~~~~~~~~p~~~~~R~l~~~~k~~~t~ 233 (249)
T 3g89_A 207 GEVLALQLPLSGEARHLVVLEKTAPTP 233 (249)
T ss_dssp EEEEEEECTTTCCEEEEEEEEECSCCC
T ss_pred EEEEEeeCCCCCCcEEEEEEEeCCCCC
Confidence 3321 1 1223 466667654443
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.028 Score=58.54 Aligned_cols=126 Identities=15% Similarity=0.161 Sum_probs=78.0
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhc--cccc---hh-hcccc-CCCCCCCccchhhccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYD--RGLV---GI-YHDWC-ESFGTYPRSYDLLHADHLFS 619 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~--RGLi---g~-yhdwc-e~f~typrTyDLlHa~~lfs 619 (689)
+.|||+++|+|+|+..|...+. -.|+-++- ++-|-.-.. ..++ .+ ..... +.|+ ..+||++-++-.|.
T Consensus 87 ~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~--~~~fD~v~~d~sf~ 162 (291)
T 3hp7_A 87 MITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFT--EGLPSFASIDVSFI 162 (291)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCT--TCCCSEEEECCSSS
T ss_pred cEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCC--CCCCCEEEEEeeHh
Confidence 5799999999999988876642 12444443 344433111 0111 00 01111 2222 23599999888776
Q ss_pred cccCCcCCccceeeeeccccccCcEEEEe---------Cc-------------hhhHHHHHHHHhhcceeEEEee-c---
Q 044932 620 RLKSRCRQPVSIVVEMDRILRPGGWAIVR---------DK-------------VEILDPLEGILRSLHWEIRMTY-A--- 673 (689)
Q Consensus 620 ~~~~~c~~~~~illEmDRILRP~G~~iir---------D~-------------~~~l~~v~~i~~~lrW~~~~~~-~--- 673 (689)
. +..+|-||-|+|+|||.+++= +. ..++.+|..++....|.+.-.. +
T Consensus 163 s-------l~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi~ 235 (291)
T 3hp7_A 163 S-------LNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPIQ 235 (291)
T ss_dssp C-------GGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSSC
T ss_pred h-------HHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC
Confidence 3 256899999999999998774 11 1377889999989999875442 1
Q ss_pred ---CCCceEEEEEe
Q 044932 674 ---QDKEGILCAQK 684 (689)
Q Consensus 674 ---~~~E~iL~~~K 684 (689)
.+.|=++.++|
T Consensus 236 g~~gn~e~l~~~~~ 249 (291)
T 3hp7_A 236 GGHGNIEFLAHLEK 249 (291)
T ss_dssp CGGGCCCEEEEEEE
T ss_pred CCCcCHHHHHHhhh
Confidence 23466666666
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.013 Score=56.04 Aligned_cols=80 Identities=10% Similarity=0.022 Sum_probs=49.0
Q ss_pred CCeEEEECCccc-hhHHHhhc-C--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCC--CCcceEEecccc
Q 044932 309 IRVVLEIGSADL-SFVASLLA-K--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPS--GVFDAIHCDGCS 382 (689)
Q Consensus 309 ~R~VLDVGCGtG-sfaa~La~-~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD--~SFDlVhcs~cl 382 (689)
..+|||||||.| ..|.+|++ . .|+++|++|.... +..-|.-. |..+ ..||+|.+.+.-
T Consensus 36 ~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~---------------~v~dDiF~-P~~~~Y~~~DLIYsirPP 99 (153)
T 2k4m_A 36 GTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG---------------IVRDDITS-PRMEIYRGAALIYSIRPP 99 (153)
T ss_dssp SSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT---------------EECCCSSS-CCHHHHTTEEEEEEESCC
T ss_pred CCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc---------------eEEccCCC-CcccccCCcCEEEEcCCC
Confidence 358999999999 68999975 4 4899999985321 22222211 3332 389999876532
Q ss_pred ccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 383 ITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 383 i~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
.+....+.++.+-+ |.-++|..
T Consensus 100 ----~El~~~i~~lA~~v--~adliI~p 121 (153)
T 2k4m_A 100 ----AEIHSSLMRVADAV--GARLIIKP 121 (153)
T ss_dssp ----TTTHHHHHHHHHHH--TCEEEEEC
T ss_pred ----HHHHHHHHHHHHHc--CCCEEEEc
Confidence 23345555655543 34455543
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0013 Score=66.73 Aligned_cols=100 Identities=14% Similarity=0.059 Sum_probs=61.1
Q ss_pred eeEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhccc-------------cchhhccccCCCC------CCC
Q 044932 547 IRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDRG-------------LVGIYHDWCESFG------TYP 606 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~RG-------------Lig~yhdwce~f~------typ 606 (689)
-..|+|+++|.|+++..|...+.. +|+-++-. ..|...-.|- -+-..+.=++.++ .-+
T Consensus 35 ~~~VLDlGcG~G~~~~~l~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 35 DITVLDLGCGKGGDLLKWKKGRIN--KLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp CCEEEEETCTTTTTHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCEEEEECCCCcHHHHHHHhcCCC--EEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 457999999999999999865432 34444432 2332222220 0112222233332 234
Q ss_pred ccchhhccccccccc-cCCcCCccceeeeeccccccCcEEEEeC
Q 044932 607 RSYDLLHADHLFSRL-KSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 607 rTyDLlHa~~lfs~~-~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
.+||+|-+..+|... .+.-. ...+|-++-|+|+|||.+++..
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~-~~~~l~~~~~~LkpgG~li~~~ 155 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQ-ADMMLRNACERLSPGGYFIGTT 155 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHH-HHHHHHHHHTTEEEEEEEEEEE
T ss_pred CCEEEEEEecchhhccCCHHH-HHHHHHHHHHHhCCCcEEEEec
Confidence 599999988776433 23223 2467899999999999999874
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0017 Score=66.56 Aligned_cols=132 Identities=17% Similarity=0.245 Sum_probs=82.4
Q ss_pred CCCCeeEEeecCCcchhHHHHhcc--CCceEEEeccCCCCCchhh----hhccccch----hhccccCCCCCCCccchhh
Q 044932 543 DWSKIRNVMDMKSIYGGFAAALAQ--QKIWVMNVVPVHAPDTLPV----IYDRGLVG----IYHDWCESFGTYPRSYDLL 612 (689)
Q Consensus 543 ~~~~iRNvmDMna~~GgFAAal~~--~~vWVMNvvp~~~~~tL~v----I~~RGLig----~yhdwce~f~typrTyDLl 612 (689)
++.....|+|.++|.|.++.+|.+ ..+-+. -++-|..+.. +.+.|+-+ +-+|..++ +|-.||+|
T Consensus 166 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~---~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~p~~~D~v 239 (332)
T 3i53_A 166 DWAALGHVVDVGGGSGGLLSALLTAHEDLSGT---VLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDP---LPAGAGGY 239 (332)
T ss_dssp CCGGGSEEEEETCTTSHHHHHHHHHCTTCEEE---EEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSC---CCCSCSEE
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHCCCCeEE---EecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCC---CCCCCcEE
Confidence 445678999999999999999875 222222 1122323222 22234322 22344444 45589999
Q ss_pred ccccccccccCC-cCCccceeeeeccccccCcEEEEeCch----------h------------hHHHHHHHHhhcceeEE
Q 044932 613 HADHLFSRLKSR-CRQPVSIVVEMDRILRPGGWAIVRDKV----------E------------ILDPLEGILRSLHWEIR 669 (689)
Q Consensus 613 Ha~~lfs~~~~~-c~~~~~illEmDRILRP~G~~iirD~~----------~------------~l~~v~~i~~~lrW~~~ 669 (689)
.+.++|..+.+. |. .+|-++=|+|+|||+++|-|.. + ....++.++..-.++..
T Consensus 240 ~~~~vlh~~~~~~~~---~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 316 (332)
T 3i53_A 240 VLSAVLHDWDDLSAV---AILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVR 316 (332)
T ss_dssp EEESCGGGSCHHHHH---HHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEE
T ss_pred EEehhhccCCHHHHH---HHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEE
Confidence 999999887654 33 4899999999999999997631 0 13456666666666653
Q ss_pred E-eecCCCceEEEEEe
Q 044932 670 M-TYAQDKEGILCAQK 684 (689)
Q Consensus 670 ~-~~~~~~E~iL~~~K 684 (689)
- ..... ..|+.|+|
T Consensus 317 ~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 317 AAHPISY-VSIVEMTA 331 (332)
T ss_dssp EEEECSS-SEEEEEEE
T ss_pred EEEECCC-cEEEEEee
Confidence 2 22233 66777765
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.14 Score=57.22 Aligned_cols=133 Identities=13% Similarity=0.077 Sum_probs=72.5
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCccchhHHHhh-----------------cCCeEEEEcCCcccHHHHHHHHHHcCCC
Q 044932 293 LESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLL-----------------AKEVLTLTVGLKDDLVDLAQVALERGFP 355 (689)
Q Consensus 293 id~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La-----------------~~~V~gmDIsp~D~seamlq~A~eRGL~ 355 (689)
++.|.+++.. . ...+|+|-+||+|+|..... ...++|+++.+....-+...... +|+.
T Consensus 206 v~lmv~l~~p---~-~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~l-hg~~ 280 (530)
T 3ufb_A 206 VRFMVEVMDP---Q-LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLL-HGLE 280 (530)
T ss_dssp HHHHHHHHCC---C-TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHH-HTCS
T ss_pred HHHHHHhhcc---C-CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHh-cCCc
Confidence 4555565531 1 34689999999999864332 23588999887432222222222 3443
Q ss_pred -cEEecCCCCCCCC----CCCCcceEEeccc-ccccc-------------ccH-HHHHHHHHhccC-------CCcEEEE
Q 044932 356 -AVVSPLGNRRLPF----PSGVFDAIHCDGC-SITWH-------------AHG-GKLLLEMNRILR-------PSGYFIL 408 (689)
Q Consensus 356 -~i~~~~dt~~LPF----pD~SFDlVhcs~c-li~W~-------------~d~-~~aL~EI~RVLR-------PGG~fVI 408 (689)
..+...++...|+ +...||+|++.-= ...|. .+. -.++.-+.+.|| |||++.+
T Consensus 281 ~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~av 360 (530)
T 3ufb_A 281 YPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAV 360 (530)
T ss_dssp CCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEE
T ss_pred cccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEE
Confidence 2344445544443 3457999998510 00010 111 134556667675 7999999
Q ss_pred EcCCCchh---HHHHHHHHHHhcce
Q 044932 409 STKHDSIE---EEEALTTLTASICW 430 (689)
Q Consensus 409 sdp~~~le---~~~~ie~La~~l~W 430 (689)
..|+..+. ....+++.+-.-++
T Consensus 361 VlP~g~Lf~~~~~~~iRk~Lle~~~ 385 (530)
T 3ufb_A 361 VVPNGTLFSDGISARIKEELLKNFN 385 (530)
T ss_dssp EEEHHHHHCCTHHHHHHHHHHHHSE
T ss_pred EecchhhhccchHHHHHHHHhhcCE
Confidence 99876552 12335544433344
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.00082 Score=67.73 Aligned_cols=95 Identities=11% Similarity=0.169 Sum_probs=60.2
Q ss_pred EEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhcc----cc-----chhhccccCCCCCCCccchhhccc-cc
Q 044932 549 NVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDR----GL-----VGIYHDWCESFGTYPRSYDLLHAD-HL 617 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~R----GL-----ig~yhdwce~f~typrTyDLlHa~-~l 617 (689)
.|||+++|.|.|+.+|..... +|+-++- +..|...-.+ |+ |-+.+.=.+.++. +.+||+|.+. .+
T Consensus 85 ~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~ 160 (299)
T 3g2m_A 85 PVLELAAGMGRLTFPFLDLGW---EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGS 160 (299)
T ss_dssp CEEEETCTTTTTHHHHHTTTC---CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHH
T ss_pred cEEEEeccCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECCcc
Confidence 699999999999999988753 3444443 2333322222 21 2222222333554 8999998854 44
Q ss_pred cccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 618 FSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 618 fs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
|.. .+.-. +..+|-+|-|+|||||.++|..
T Consensus 161 ~~~-~~~~~-~~~~l~~~~~~L~pgG~l~~~~ 190 (299)
T 3g2m_A 161 INE-LDEAD-RRGLYASVREHLEPGGKFLLSL 190 (299)
T ss_dssp HTT-SCHHH-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccc-CCHHH-HHHHHHHHHHHcCCCcEEEEEe
Confidence 543 33222 2568899999999999999974
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.003 Score=60.22 Aligned_cols=91 Identities=19% Similarity=0.146 Sum_probs=54.8
Q ss_pred eEEeecCCcchhHHHHhccC---CceEEEeccCCCC-Cchhh----hhccccch---hhc-cccCCCCCCCccchhhccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ---KIWVMNVVPVHAP-DTLPV----IYDRGLVG---IYH-DWCESFGTYPRSYDLLHAD 615 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~---~vWVMNvvp~~~~-~tL~v----I~~RGLig---~yh-dwce~f~typrTyDLlHa~ 615 (689)
++|+|+++|.|.++.+|... .. .|+-++-. ..+.+ +-..|+-. +++ |..+.++..+. ||+|.++
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~ 133 (210)
T 3c3p_A 58 QLVVVPGDGLGCASWWFARAISISS---RVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMD 133 (210)
T ss_dssp SEEEEESCGGGHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence 47999999999999988754 21 23333321 22221 12224321 222 33343455567 9999776
Q ss_pred cccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 616 HLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 616 ~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
.- ... ...++-++-|+|+|||.+++.+
T Consensus 134 ~~------~~~-~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 134 CD------VFN-GADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp TT------TSC-HHHHHHHHGGGEEEEEEEEEES
T ss_pred CC------hhh-hHHHHHHHHHhcCCCeEEEEEC
Confidence 32 122 2456778889999999999975
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0019 Score=61.63 Aligned_cols=100 Identities=15% Similarity=0.154 Sum_probs=62.4
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhhhhcc----cc-------chhhc-cccCCCCCCCccchhhc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPVIYDR----GL-------VGIYH-DWCESFGTYPRSYDLLH 613 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~vI~~R----GL-------ig~yh-dwce~f~typrTyDLlH 613 (689)
..|+|+++|.|.|+.+|... +.. +|+-++- +..+.....+ |+ |-+++ |. +.++..+.+||+|-
T Consensus 31 ~~vLDiGcG~G~~~~~l~~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~v~ 107 (217)
T 3jwh_A 31 RRVIDLGCGQGNLLKILLKDSFFE--QITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGAL-TYQDKRFHGYDAAT 107 (217)
T ss_dssp CEEEEETCTTCHHHHHHHHCTTCS--EEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCT-TSCCGGGCSCSEEE
T ss_pred CEEEEeCCCCCHHHHHHHhhCCCC--EEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCc-ccccccCCCcCEEe
Confidence 47999999999999999864 211 2333332 2333322222 22 11111 22 22233346999999
Q ss_pred cccccccccCCcCCccceeeeeccccccCcEEEEeCchh
Q 044932 614 ADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVE 652 (689)
Q Consensus 614 a~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~~ 652 (689)
+..+|....+ -. +..+|-++-|+|+|||++++-+..+
T Consensus 108 ~~~~l~~~~~-~~-~~~~l~~~~~~LkpgG~li~~~~~~ 144 (217)
T 3jwh_A 108 VIEVIEHLDL-SR-LGAFERVLFEFAQPKIVIVTTPNIE 144 (217)
T ss_dssp EESCGGGCCH-HH-HHHHHHHHHTTTCCSEEEEEEEBHH
T ss_pred eHHHHHcCCH-HH-HHHHHHHHHHHcCCCEEEEEccCcc
Confidence 9999987632 22 2457889999999999998876654
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.026 Score=56.03 Aligned_cols=126 Identities=16% Similarity=0.143 Sum_probs=74.6
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhcc-c------cchhhcccc-CCCCCCCccchhhcccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDR-G------LVGIYHDWC-ESFGTYPRSYDLLHADHLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~R-G------Lig~yhdwc-e~f~typrTyDLlHa~~lf 618 (689)
..|||+++|.|+|+..|...... .|+-++- ++-|..-..+ . ...+ ...+ +.++.- -+|.+-.+.+|
T Consensus 39 ~~VLDiGcGtG~~t~~la~~g~~--~V~gvDis~~ml~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~d~~~~D~v~ 113 (232)
T 3opn_A 39 KTCLDIGSSTGGFTDVMLQNGAK--LVYALDVGTNQLAWKIRSDERVVVMEQFNF-RNAVLADFEQG--RPSFTSIDVSF 113 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCS--EEEEECSSCCCCCHHHHTCTTEEEECSCCG-GGCCGGGCCSC--CCSEEEECCSS
T ss_pred CEEEEEccCCCHHHHHHHhcCCC--EEEEEcCCHHHHHHHHHhCccccccccceE-EEeCHhHcCcC--CCCEEEEEEEh
Confidence 46999999999999988876532 3444443 3444331111 1 1111 1112 333320 13555555555
Q ss_pred ccccCCcCCccceeeeeccccccCcEEEEe-------------------Cc---hhhHHHHHHHHhhcceeEEEeec---
Q 044932 619 SRLKSRCRQPVSIVVEMDRILRPGGWAIVR-------------------DK---VEILDPLEGILRSLHWEIRMTYA--- 673 (689)
Q Consensus 619 s~~~~~c~~~~~illEmDRILRP~G~~iir-------------------D~---~~~l~~v~~i~~~lrW~~~~~~~--- 673 (689)
+.. ..+|-|+-|+|+|||.+++- |. ...+..+..++....|.+.-.+.
T Consensus 114 ~~l-------~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~pi 186 (232)
T 3opn_A 114 ISL-------DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPI 186 (232)
T ss_dssp SCG-------GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECSS
T ss_pred hhH-------HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEccC
Confidence 543 45899999999999998874 11 12567788888888888754421
Q ss_pred ----CCCceEEEEEec
Q 044932 674 ----QDKEGILCAQKT 685 (689)
Q Consensus 674 ----~~~E~iL~~~K~ 685 (689)
.+-|-+|.++|.
T Consensus 187 ~g~~gn~e~l~~~~~~ 202 (232)
T 3opn_A 187 KGGAGNVEFLVHLLKD 202 (232)
T ss_dssp CBTTTBCCEEEEEEES
T ss_pred CCCCCCHHHHHHHhhc
Confidence 234678888773
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0012 Score=64.33 Aligned_cols=99 Identities=15% Similarity=0.047 Sum_probs=56.8
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhcc----cc-chhhc-cccCCC-CCCCccchhhccc-ccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDR----GL-VGIYH-DWCESF-GTYPRSYDLLHAD-HLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~R----GL-ig~yh-dwce~f-~typrTyDLlHa~-~lf 618 (689)
..|||+++|.|.++..|.....- +|+-++.. .-|...-.+ |. +-+++ |+.+-. +.-+.+||+|.++ ..+
T Consensus 62 ~~vLDiGcGtG~~~~~l~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~ 139 (236)
T 1zx0_A 62 GRVLEVGFGMAIAASKVQEAPID--EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL 139 (236)
T ss_dssp EEEEEECCTTSHHHHHHHTSCEE--EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred CeEEEEeccCCHHHHHHHhcCCC--eEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCccc
Confidence 46999999999999999775432 44444432 333222222 11 11111 222211 2235799999883 221
Q ss_pred cc-ccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 619 SR-LKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 619 s~-~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
+. ..+.-. ...+|-|+-|+|||||.+++-+
T Consensus 140 ~~~~~~~~~-~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 140 SEETWHTHQ-FNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp BGGGTTTHH-HHHHHHTHHHHEEEEEEEEECC
T ss_pred chhhhhhhh-HHHHHHHHHHhcCCCeEEEEEe
Confidence 11 111112 2356889999999999999865
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0034 Score=66.51 Aligned_cols=97 Identities=22% Similarity=0.225 Sum_probs=62.2
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCCCch----hhhhcccc---chhhccccCCCCCCCccchhhcccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAPDTL----PVIYDRGL---VGIYHDWCESFGTYPRSYDLLHADHLFSR 620 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~~tL----~vI~~RGL---ig~yhdwce~f~typrTyDLlHa~~lfs~ 620 (689)
..|||+++|.|.++..|..... -.|+-++..+-+ ..+-..|+ |-+++.=.+.++ +|..||+|.+..++..
T Consensus 65 ~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~Iv~~~~~~~ 141 (376)
T 3r0q_C 65 KTVLDVGTGSGILAIWSAQAGA--RKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDIS-LPEKVDVIISEWMGYF 141 (376)
T ss_dssp CEEEEESCTTTHHHHHHHHTTC--SEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCC-CSSCEEEEEECCCBTT
T ss_pred CEEEEeccCcCHHHHHHHhcCC--CEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcC-cCCcceEEEEcChhhc
Confidence 5799999999999988876642 123433333222 22333444 334443334443 5699999999665443
Q ss_pred ccCCcCCccceeeeeccccccCcEEEEe
Q 044932 621 LKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 621 ~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
....-. +..++-+++|+|+|||.+|+.
T Consensus 142 l~~e~~-~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 142 LLRESM-FDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp BTTTCT-HHHHHHHHHHHEEEEEEEESS
T ss_pred ccchHH-HHHHHHHHHhhCCCCeEEEEe
Confidence 333233 466888999999999999876
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0016 Score=65.72 Aligned_cols=39 Identities=10% Similarity=0.195 Sum_probs=33.4
Q ss_pred CccchhhccccccccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 606 PRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 606 prTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
+.+||+|++..+|-.+.+. ...|-||-|+|+|||+++|-
T Consensus 133 ~~~fD~V~~~~~l~~~~d~----~~~l~~~~r~LkpgG~l~i~ 171 (292)
T 2aot_A 133 LQKWDFIHMIQMLYYVKDI----PATLKFFHSLLGTNAKMLII 171 (292)
T ss_dssp CCCEEEEEEESCGGGCSCH----HHHHHHHHHTEEEEEEEEEE
T ss_pred CCceeEEEEeeeeeecCCH----HHHHHHHHHHcCCCcEEEEE
Confidence 5899999999999877643 45799999999999999985
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.019 Score=59.45 Aligned_cols=124 Identities=16% Similarity=0.087 Sum_probs=65.3
Q ss_pred ccchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHH-cCCCcEE
Q 044932 284 EFKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALE-RGFPAVV 358 (689)
Q Consensus 284 ~F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~e-RGL~~i~ 358 (689)
.|..++..-+..|.+-. .++ +..+|||+||+.|+|+.+.+.. .|.|..+.. |.+ ...+... .|...+.
T Consensus 53 ~yRSRAayKL~EIdeK~-lik---pg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~-D~~--~~P~~~~~~Gv~~i~ 125 (269)
T 2px2_A 53 HPVSRGTAKLRWLVERR-FVQ---PIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGG-PGH--EEPMLMQSYGWNIVT 125 (269)
T ss_dssp CCSSTHHHHHHHHHHTT-SCC---CCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCS-TTS--CCCCCCCSTTGGGEE
T ss_pred CcccHHHHHHHHHHHcC-CCC---CCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcc-ccc--cCCCcccCCCceEEE
Confidence 35555554455555542 344 3579999999999999988775 234554443 210 0000000 1222222
Q ss_pred -ecC-CCCCCCCCCCCcceEEecc--ccccccccHH---HHHHHHHhccCCCc-EEEEEcCCCchh
Q 044932 359 -SPL-GNRRLPFPSGVFDAIHCDG--CSITWHAHGG---KLLLEMNRILRPSG-YFILSTKHDSIE 416 (689)
Q Consensus 359 -~~~-dt~~LPFpD~SFDlVhcs~--cli~W~~d~~---~aL~EI~RVLRPGG-~fVIsdp~~~le 416 (689)
... |... .+...||+|+|-. +.-++.-|.. .+|.=+.++|+||| .|++-.-..+..
T Consensus 126 ~~~G~Df~~--~~~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg~~~ 189 (269)
T 2px2_A 126 MKSGVDVFY--KPSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMP 189 (269)
T ss_dssp EECSCCGGG--SCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSH
T ss_pred eeccCCccC--CCCCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCCCch
Confidence 112 3333 2346899999842 1111111221 23433448999999 888876555443
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.022 Score=60.05 Aligned_cols=133 Identities=17% Similarity=0.102 Sum_probs=70.4
Q ss_pred cchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHH-HHHHHHHcCCC-cEE
Q 044932 285 FKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVD-LAQVALERGFP-AVV 358 (689)
Q Consensus 285 F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~sea-mlq~A~eRGL~-~i~ 358 (689)
|..++..-+..|.+.. .+. ...+|||+||++|+|+.+.+.. .|.|+|+-.....+. +.+ ..+-. +.+
T Consensus 75 y~SR~~~KL~ei~~~~-~l~---~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~---ql~w~lV~~ 147 (321)
T 3lkz_A 75 PVSRGTAKLRWLVERR-FLE---PVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQ---SYGWNIVTM 147 (321)
T ss_dssp CSSTHHHHHHHHHHTT-SCC---CCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCC---BTTGGGEEE
T ss_pred ccchHHHHHHHHHHhc-CCC---CCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhh---hcCCcceEE
Confidence 4444443344444432 233 3459999999999999866643 388999876421100 000 01111 112
Q ss_pred e-cCCCCCCCCCCCCcceEEeccc---cccccccH--HHHHHHHHhccCCC-cEEEEEcCCCchhHH-HHHHHHHH
Q 044932 359 S-PLGNRRLPFPSGVFDAIHCDGC---SITWHAHG--GKLLLEMNRILRPS-GYFILSTKHDSIEEE-EALTTLTA 426 (689)
Q Consensus 359 ~-~~dt~~LPFpD~SFDlVhcs~c---li~W~~d~--~~aL~EI~RVLRPG-G~fVIsdp~~~le~~-~~ie~La~ 426 (689)
. -.|...|+- ..+|+|+|-.. -.++.+.. ..+|.=+-+.|++| |-|++-.-.+|..+. +.++.+-.
T Consensus 148 ~~~~Dv~~l~~--~~~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~~lq~ 221 (321)
T 3lkz_A 148 KSGVDVFYRPS--ECCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKMELLQR 221 (321)
T ss_dssp ECSCCTTSSCC--CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHHHHHH
T ss_pred EeccCHhhCCC--CCCCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHHHHHHH
Confidence 2 123344432 56999998532 11222111 12444456788999 999998766665443 33444433
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0013 Score=67.78 Aligned_cols=97 Identities=16% Similarity=0.255 Sum_probs=63.7
Q ss_pred eeEEeecCCcchhHHHHhccC--CceEEEeccCCCCCchhh----hhccccch----hhccccCCCCCCCccchhhcccc
Q 044932 547 IRNVMDMKSIYGGFAAALAQQ--KIWVMNVVPVHAPDTLPV----IYDRGLVG----IYHDWCESFGTYPRSYDLLHADH 616 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~--~vWVMNvvp~~~~~tL~v----I~~RGLig----~yhdwce~f~typrTyDLlHa~~ 616 (689)
.+.|+|+++|.|.++.+|... .+-+. -++-|..+.. +-..|+-+ +-+|..+.-++.|..||+|.+.+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~---~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 256 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQ---IWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLND 256 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEE---EEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEES
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEE---EEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEec
Confidence 788999999999999998753 23222 2222333322 22234322 22333332112678899999999
Q ss_pred ccccccCC-cCCccceeeeeccccccCcEEEEeC
Q 044932 617 LFSRLKSR-CRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 617 lfs~~~~~-c~~~~~illEmDRILRP~G~~iirD 649 (689)
+|..+.+. |. .+|-++-|+|+|||.++|-|
T Consensus 257 vlh~~~~~~~~---~~l~~~~~~L~pgG~l~i~e 287 (352)
T 3mcz_A 257 CLHYFDAREAR---EVIGHAAGLVKPGGALLILT 287 (352)
T ss_dssp CGGGSCHHHHH---HHHHHHHHTEEEEEEEEEEE
T ss_pred ccccCCHHHHH---HHHHHHHHHcCCCCEEEEEE
Confidence 99887653 43 58899999999999999975
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0051 Score=63.91 Aligned_cols=97 Identities=15% Similarity=0.322 Sum_probs=61.0
Q ss_pred CCeeEEeecCCcchhHHHHhccC--CceEEEeccCCCCCchhhhhc----cccch----hhccccCCCCCCCccchhhcc
Q 044932 545 SKIRNVMDMKSIYGGFAAALAQQ--KIWVMNVVPVHAPDTLPVIYD----RGLVG----IYHDWCESFGTYPRSYDLLHA 614 (689)
Q Consensus 545 ~~iRNvmDMna~~GgFAAal~~~--~vWVMNvvp~~~~~tL~vI~~----RGLig----~yhdwce~f~typrTyDLlHa 614 (689)
.....|+|+++|.|.++.+|... .+-| +-++-+..+...-. .|+-+ +-+|..+. .+|. +|+|.+
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~---~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~-~D~v~~ 262 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKHFPELDS---TILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKE--SYPE-ADAVLF 262 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHCTTCEE---EEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTS--CCCC-CSEEEE
T ss_pred CCCCEEEEECCcccHHHHHHHHHCCCCeE---EEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccC--CCCC-CCEEEE
Confidence 45678999999999999999753 2222 22222333332222 24422 22333332 2343 499999
Q ss_pred ccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 615 DHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 615 ~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
..+|..+.+.-. ..+|-++-|+|+|||.++|-|
T Consensus 263 ~~vlh~~~d~~~--~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 263 CRILYSANEQLS--TIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp ESCGGGSCHHHH--HHHHHHHHTTCCTTCEEEEEE
T ss_pred echhccCCHHHH--HHHHHHHHHhcCCCCEEEEEe
Confidence 999987765211 357899999999999998865
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0018 Score=62.86 Aligned_cols=93 Identities=15% Similarity=0.207 Sum_probs=58.8
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhh----hhcccc---chhh-ccccCCCCCCCccchhhcccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPV----IYDRGL---VGIY-HDWCESFGTYPRSYDLLHADHLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~v----I~~RGL---ig~y-hdwce~f~typrTyDLlHa~~lf 618 (689)
..|+|+++|.|+++..|.... ..|+-++-. ..+.. +-..|+ |-+. .|+.+ ++ .+.+||+|.++..|
T Consensus 80 ~~vLD~gcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~-~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 80 DVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLL-LA-SFLKADVVFLSPPW 154 (241)
T ss_dssp SEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH-HG-GGCCCSEEEECCCC
T ss_pred CEEEECccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHH-hc-ccCCCCEEEECCCc
Confidence 469999999999999998765 234444432 22221 122233 2122 22222 22 35699999999888
Q ss_pred ccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 619 SRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 619 s~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
...... ...+.++-|+|+|||++++..
T Consensus 155 ~~~~~~----~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 155 GGPDYA----TAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp SSGGGG----GSSSBCTTTSCSSCHHHHHHH
T ss_pred CCcchh----hhHHHHHHhhcCCcceeHHHH
Confidence 764432 235779999999999988774
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0048 Score=59.43 Aligned_cols=109 Identities=10% Similarity=0.036 Sum_probs=67.1
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhh----ccccc---hhhc-cccCCCCCCCccchhhcccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIY----DRGLV---GIYH-DWCESFGTYPRSYDLLHADHLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~----~RGLi---g~yh-dwce~f~typrTyDLlHa~~lf 618 (689)
..|+|+++|.|.++..|..... .|+-++- +..+...- ..|+- -+++ |..+.+... ..||+|-+++.+
T Consensus 57 ~~vLDlGcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~-~~~D~v~~~~~~ 132 (204)
T 3njr_A 57 ELLWDIGGGSGSVSVEWCLAGG---RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADL-PLPEAVFIGGGG 132 (204)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTS-CCCSEEEECSCC
T ss_pred CEEEEecCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccC-CCCCEEEECCcc
Confidence 5699999999999988876532 2443433 22332221 22332 1222 222223333 368888765522
Q ss_pred ccccCCcCCccceeeeeccccccCcEEEEeC-chhhHHHHHHHHhhcceeEE
Q 044932 619 SRLKSRCRQPVSIVVEMDRILRPGGWAIVRD-KVEILDPLEGILRSLHWEIR 669 (689)
Q Consensus 619 s~~~~~c~~~~~illEmDRILRP~G~~iirD-~~~~l~~v~~i~~~lrW~~~ 669 (689)
. .. ++-++-|+|||||.+++.. ..+-+..+..+++...+++.
T Consensus 133 -------~-~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~ 175 (204)
T 3njr_A 133 -------S-QA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLL 175 (204)
T ss_dssp -------C-HH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEE
T ss_pred -------c-HH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEE
Confidence 3 35 7889999999999999975 45677777777777666654
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0072 Score=58.49 Aligned_cols=117 Identities=12% Similarity=0.094 Sum_probs=67.8
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCCC-Cchhh----hhcccc--chhh-ccccCCCC--CCCccchhhcccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-DTLPV----IYDRGL--VGIY-HDWCESFG--TYPRSYDLLHADH 616 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-~tL~v----I~~RGL--ig~y-hdwce~f~--typrTyDLlHa~~ 616 (689)
..|+|+++|.|.|+.+|... |-+ ||+-++-. .-+.. +-..|+ |-+. .|..+ ++ .-+.+||+|++..
T Consensus 40 ~~vLDiGcG~G~~~~~la~~~p~~--~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~-l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 40 PIHIEVGTGKGQFISGMAKQNPDI--NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADT-LTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTS--EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGG-HHHHCCTTSCCEEEEES
T ss_pred ceEEEEecCCCHHHHHHHHHCCCC--CEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCcCCcCEEEEEC
Confidence 35999999999999998753 322 45544432 22222 112243 1112 23322 22 2256889887532
Q ss_pred ccc-----cccCCcCCccceeeeeccccccCcEEEEe-CchhhHHHHHHHHhhcceeE
Q 044932 617 LFS-----RLKSRCRQPVSIVVEMDRILRPGGWAIVR-DKVEILDPLEGILRSLHWEI 668 (689)
Q Consensus 617 lfs-----~~~~~c~~~~~illEmDRILRP~G~~iir-D~~~~l~~v~~i~~~lrW~~ 668 (689)
-.. ....+-. ...+|-++-|+|+|||.++|. |..+....+..++....|..
T Consensus 117 ~~p~~~~~~~~~rl~-~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~ 173 (213)
T 2fca_A 117 SDPWPKKRHEKRRLT-YSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLL 173 (213)
T ss_dssp CCCCCSGGGGGGSTT-SHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEE
T ss_pred CCCCcCccccccccC-cHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCcc
Confidence 111 1112222 256788999999999999987 56667777666665556654
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.011 Score=61.76 Aligned_cols=96 Identities=17% Similarity=0.100 Sum_probs=57.7
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCCCchhh----hhcccc---chhhccccCCCCCCCccchhhcccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAPDTLPV----IYDRGL---VGIYHDWCESFGTYPRSYDLLHADHLFSR 620 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~~tL~v----I~~RGL---ig~yhdwce~f~typrTyDLlHa~~lfs~ 620 (689)
..|||+++|.|.++..|...+.- .|+-++...-+.. +...|+ |-+++.=.+.++.-+.+||+|-+..+...
T Consensus 66 ~~VLDiGcGtG~ls~~la~~g~~--~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~ 143 (340)
T 2fyt_A 66 KVVLDVGCGTGILSMFAAKAGAK--KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYF 143 (340)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCS--EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTT
T ss_pred CEEEEeeccCcHHHHHHHHcCCC--EEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCchhh
Confidence 47999999999999888766421 2333332222221 223343 23333323344322379999998764333
Q ss_pred ccCCcCCccceeeeeccccccCcEEE
Q 044932 621 LKSRCRQPVSIVVEMDRILRPGGWAI 646 (689)
Q Consensus 621 ~~~~c~~~~~illEmDRILRP~G~~i 646 (689)
....-. +..+|-++.|+|+|||.++
T Consensus 144 l~~~~~-~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 144 LLFESM-LDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp BTTTCH-HHHHHHHHHHHEEEEEEEE
T ss_pred ccCHHH-HHHHHHHHHhhcCCCcEEE
Confidence 322223 3568889999999999998
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0017 Score=65.08 Aligned_cols=62 Identities=15% Similarity=0.230 Sum_probs=45.1
Q ss_pred CccchhhccccccccccCCc-CCccceeeeeccccccCcEEEEeCch----------------hhHHHHHHHHhhcceeE
Q 044932 606 PRSYDLLHADHLFSRLKSRC-RQPVSIVVEMDRILRPGGWAIVRDKV----------------EILDPLEGILRSLHWEI 668 (689)
Q Consensus 606 prTyDLlHa~~lfs~~~~~c-~~~~~illEmDRILRP~G~~iirD~~----------------~~l~~v~~i~~~lrW~~ 668 (689)
+.+||+|-+..+|....... + +..+|-||-|+|||||+++|.+.. -....+..++..-.++.
T Consensus 172 ~~~fD~V~~~~~l~~~~~~~~~-~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~ 250 (289)
T 2g72_A 172 PLPADALVSAFCLEAVSPDLAS-FQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKV 250 (289)
T ss_dssp CSSEEEEEEESCHHHHCSSHHH-HHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred CCCCCEEEehhhhhhhcCCHHH-HHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCeE
Confidence 46799999999887644332 3 366899999999999999986311 13567777777666654
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0071 Score=61.47 Aligned_cols=133 Identities=17% Similarity=0.208 Sum_probs=79.0
Q ss_pred CeeEEeecCCcchhHHHHhccC-CceEEEeccCCCCCchhhh----hccccch----hhccccCCCCCCCccchhhcccc
Q 044932 546 KIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAPDTLPVI----YDRGLVG----IYHDWCESFGTYPRSYDLLHADH 616 (689)
Q Consensus 546 ~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~~tL~vI----~~RGLig----~yhdwce~f~typrTyDLlHa~~ 616 (689)
.-..|+|+++|.|.++.+|... |-. .|+-++-+..+... -..|+-+ +-+|..+. .+|..||+|.+.+
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~D~v~~~~ 240 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHNPNA--EIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEV--DYGNDYDLVLLPN 240 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTC--EEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTS--CCCSCEEEEEEES
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCC--eEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccC--CCCCCCcEEEEcc
Confidence 4568999999999999999754 211 23333322222211 1223322 12233321 3566799999999
Q ss_pred ccccccCCcCCccceeeeeccccccCcEEEEeCchh---------------------------hHHHHHHHHhhcceeE-
Q 044932 617 LFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVE---------------------------ILDPLEGILRSLHWEI- 668 (689)
Q Consensus 617 lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~~---------------------------~l~~v~~i~~~lrW~~- 668 (689)
+|..+.+.-. ..+|-++-|+|+|||+++|-|... ....++.++..-.++.
T Consensus 241 ~l~~~~~~~~--~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~ 318 (335)
T 2r3s_A 241 FLHHFDVATC--EQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHS 318 (335)
T ss_dssp CGGGSCHHHH--HHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEE
T ss_pred hhccCCHHHH--HHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCee
Confidence 9887743211 357889999999999888864210 1455666666666654
Q ss_pred EEeecCCCceEEEEEe
Q 044932 669 RMTYAQDKEGILCAQK 684 (689)
Q Consensus 669 ~~~~~~~~E~iL~~~K 684 (689)
++........++++++
T Consensus 319 ~~~~~~~~~~~i~~~~ 334 (335)
T 2r3s_A 319 QLHSLPTTQQQVIVAY 334 (335)
T ss_dssp EEECCTTSSSEEEEEE
T ss_pred eEEECCCCceeEEEec
Confidence 3333333456777765
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=95.21 E-value=0.0096 Score=62.27 Aligned_cols=96 Identities=16% Similarity=0.175 Sum_probs=58.9
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCCCchhh----hhcccc---chhhccccCCCCCCCccchhhcccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAPDTLPV----IYDRGL---VGIYHDWCESFGTYPRSYDLLHADHLFSR 620 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~~tL~v----I~~RGL---ig~yhdwce~f~typrTyDLlHa~~lfs~ 620 (689)
..|||+++|.|.++..+...+.- .|+-++....+.. +-..|| |-+.+.=.+.+ ..|..||+|-+..++..
T Consensus 52 ~~VLDiGcGtG~ls~~la~~g~~--~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~~~~~~D~Ivs~~~~~~ 128 (348)
T 2y1w_A 52 KIVLDVGCGSGILSFFAAQAGAR--KIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEV-SLPEQVDIIISEPMGYM 128 (348)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCS--EEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSCEEEEEECCCBTT
T ss_pred CEEEEcCCCccHHHHHHHhCCCC--EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhC-CCCCceeEEEEeCchhc
Confidence 47999999999999888765431 2333332212211 222244 22333222223 24678999999888776
Q ss_pred ccCCcCCccceeeeeccccccCcEEEEe
Q 044932 621 LKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 621 ~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
+...-. ...+.++-|+|+|||.+++.
T Consensus 129 ~~~~~~--~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 129 LFNERM--LESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp BTTTSH--HHHHHHGGGGEEEEEEEESC
T ss_pred CChHHH--HHHHHHHHhhcCCCeEEEEe
Confidence 543222 34677899999999999854
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=95.16 E-value=0.003 Score=60.74 Aligned_cols=89 Identities=18% Similarity=0.158 Sum_probs=54.4
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhcc----c-cchhhccccCCCCCCCccchhhccccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDR----G-LVGIYHDWCESFGTYPRSYDLLHADHLFSRL 621 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~R----G-Lig~yhdwce~f~typrTyDLlHa~~lfs~~ 621 (689)
..|+|+++|.|.++..|..... +|+-++- +..+...-.+ | +--+..|..+.++ .+.+||+|.+++++...
T Consensus 72 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~~~~~ 147 (231)
T 1vbf_A 72 QKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE-EEKPYDRVVVWATAPTL 147 (231)
T ss_dssp CEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG-GGCCEEEEEESSBBSSC
T ss_pred CEEEEEcCCCCHHHHHHHHHcC---EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccc-cCCCccEEEECCcHHHH
Confidence 3799999999999999976532 3433332 2222222222 1 1112223333222 24689999988777532
Q ss_pred cCCcCCccceeeeeccccccCcEEEEeCc
Q 044932 622 KSRCRQPVSIVVEMDRILRPGGWAIVRDK 650 (689)
Q Consensus 622 ~~~c~~~~~illEmDRILRP~G~~iirD~ 650 (689)
.-++-|+|+|||.+++-..
T Consensus 148 ----------~~~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 148 ----------LCKPYEQLKEGGIMILPIG 166 (231)
T ss_dssp ----------CHHHHHTEEEEEEEEEEEC
T ss_pred ----------HHHHHHHcCCCcEEEEEEc
Confidence 2367899999999998754
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.014 Score=60.51 Aligned_cols=99 Identities=18% Similarity=0.152 Sum_probs=53.8
Q ss_pred eEEeecCCcchhHHHHhccCC-ceEEEeccCCCCCchhhh--hcccc--chhhccccCCCCCCCccchhhcccccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQK-IWVMNVVPVHAPDTLPVI--YDRGL--VGIYHDWCESFGTYPRSYDLLHADHLFSRLK 622 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~-vWVMNvvp~~~~~tL~vI--~~RGL--ig~yhdwce~f~typrTyDLlHa~~lfs~~~ 622 (689)
..|+|++||.|+|+..|.... |.-+-+.+..++..+-.+ -..|. |-+... ...+..-+.+||+|.++..|+...
T Consensus 84 ~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~D~~~l~~~~fD~V~sd~~~~~g~ 162 (305)
T 2p41_A 84 GKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSG-VDVFFIPPERCDTLLCDIGESSPN 162 (305)
T ss_dssp EEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECS-CCTTTSCCCCCSEEEECCCCCCSS
T ss_pred CEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHHhhhcCCCCeEEEec-cccccCCcCCCCEEEECCccccCc
Confidence 579999999999998887762 322222111111111000 00111 111111 122333357899999988775110
Q ss_pred ---CCcCCccceeeeeccccccCcEEEEe
Q 044932 623 ---SRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 623 ---~~c~~~~~illEmDRILRP~G~~iir 648 (689)
+.-.+ ..+|-++-|+|+|||.+++.
T Consensus 163 ~~~d~~~~-l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 163 PTVEAGRT-LRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp HHHHHHHH-HHHHHHHHHHCCTTCEEEEE
T ss_pred chhhHHHH-HHHHHHHHHHhCCCCEEEEE
Confidence 00001 13677889999999999995
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.0032 Score=61.65 Aligned_cols=127 Identities=16% Similarity=0.171 Sum_probs=70.1
Q ss_pred eEEeecCCcchhHHHHhccC-C-ceEEEeccCCC-CCchhhh----hccccch---hh-ccccCCCCCCC-----ccchh
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-K-IWVMNVVPVHA-PDTLPVI----YDRGLVG---IY-HDWCESFGTYP-----RSYDL 611 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~-vWVMNvvp~~~-~~tL~vI----~~RGLig---~y-hdwce~f~typ-----rTyDL 611 (689)
++|+|+++|.|.++.+|... + -. .|+-++. +..+.+. -..|+-. +. .|..+.++.+| .+||+
T Consensus 74 ~~vLdiG~G~G~~~~~la~~~~~~~--~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 74 KQVLEIGVFRGYSALAMALQLPPDG--QIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTC--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CEEEEecCCCCHHHHHHHHhCCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 47999999999999888753 1 11 1232322 1222221 1223321 11 12222222222 68999
Q ss_pred hccccccccccCCcCCccceeeeeccccccCcEEEEeCch------------hhHHHHHHHH----hhcceeEEEeecCC
Q 044932 612 LHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKV------------EILDPLEGIL----RSLHWEIRMTYAQD 675 (689)
Q Consensus 612 lHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~------------~~l~~v~~i~----~~lrW~~~~~~~~~ 675 (689)
|..+.... . ...++-++-|+|||||++++.+.. .....++.+. ..-++.+.+.. -
T Consensus 152 V~~d~~~~------~-~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp--~ 222 (232)
T 3cbg_A 152 IFIDADKR------N-YPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIP--L 222 (232)
T ss_dssp EEECSCGG------G-HHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEEEEC--S
T ss_pred EEECCCHH------H-HHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEEEEE--c
Confidence 98765422 1 234567778999999999997532 1223334433 34466666542 2
Q ss_pred CceEEEEEec
Q 044932 676 KEGILCAQKT 685 (689)
Q Consensus 676 ~E~iL~~~K~ 685 (689)
.+++.+++|.
T Consensus 223 ~dG~~~~~~~ 232 (232)
T 3cbg_A 223 GDGMTLALKK 232 (232)
T ss_dssp BTCEEEEEEC
T ss_pred CCeEEEEEeC
Confidence 4679998874
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.015 Score=54.15 Aligned_cols=78 Identities=18% Similarity=0.162 Sum_probs=40.0
Q ss_pred ccchhhccccccccccCCc-C------CccceeeeeccccccCcEEEEeCc-hhhHHHHHHHHhhcceeEEEee-----c
Q 044932 607 RSYDLLHADHLFSRLKSRC-R------QPVSIVVEMDRILRPGGWAIVRDK-VEILDPLEGILRSLHWEIRMTY-----A 673 (689)
Q Consensus 607 rTyDLlHa~~lfs~~~~~c-~------~~~~illEmDRILRP~G~~iirD~-~~~l~~v~~i~~~lrW~~~~~~-----~ 673 (689)
.+||+|-++..+....... + +...+|-++-|+|||||.+++.+- ..-...+...+...--.+.+.. .
T Consensus 96 ~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~v~~~~~~~~~~ 175 (196)
T 2nyu_A 96 RRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRK 175 (196)
T ss_dssp GCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHHHEEEEEEECCC----
T ss_pred CCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHHHhcceEEECCcccCc
Confidence 5899998876443211100 0 013567889999999999999732 1222333333333212233321 1
Q ss_pred CCCceEEEEEe
Q 044932 674 QDKEGILCAQK 684 (689)
Q Consensus 674 ~~~E~iL~~~K 684 (689)
...|.+|+|..
T Consensus 176 ~~~e~~~v~~g 186 (196)
T 2nyu_A 176 ESSEVYFLATQ 186 (196)
T ss_dssp ----EEEEEEE
T ss_pred cCceEEEEeee
Confidence 23577777764
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.0036 Score=59.28 Aligned_cols=88 Identities=17% Similarity=0.135 Sum_probs=53.3
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhcc----cc--chhh-ccccCCCCCCCccchhhccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDR----GL--VGIY-HDWCESFGTYPRSYDLLHADHLFS 619 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~R----GL--ig~y-hdwce~f~typrTyDLlHa~~lfs 619 (689)
..|+|+++|.|.+++.|..... +|+-++- +..+...-.+ |+ |-+. .|..+.+ .-+.+||+|.+++.+.
T Consensus 79 ~~vLdiG~G~G~~~~~la~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~i~~~~~~~ 154 (210)
T 3lbf_A 79 SRVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGW-QARAPFDAIIVTAAPP 154 (210)
T ss_dssp CEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC-GGGCCEEEEEESSBCS
T ss_pred CEEEEEcCCCCHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCC-ccCCCccEEEEccchh
Confidence 4799999999999999876532 2333332 2222222221 32 1122 2333322 2246899999987765
Q ss_pred cccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 620 RLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 620 ~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
... =++-|+|+|||.+++--
T Consensus 155 ~~~----------~~~~~~L~pgG~lv~~~ 174 (210)
T 3lbf_A 155 EIP----------TALMTQLDEGGILVLPV 174 (210)
T ss_dssp SCC----------THHHHTEEEEEEEEEEE
T ss_pred hhh----------HHHHHhcccCcEEEEEE
Confidence 432 25678999999999863
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.0039 Score=63.51 Aligned_cols=134 Identities=13% Similarity=0.077 Sum_probs=66.6
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCC--CC-Cchhhhhcccc-chhhccccCCCCCCCccchhhcccccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVH--AP-DTLPVIYDRGL-VGIYHDWCESFGTYPRSYDLLHADHLFSRLK 622 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~--~~-~tL~vI~~RGL-ig~yhdwce~f~typrTyDLlHa~~lfs~~~ 622 (689)
..|+|++||.|+|+..|... .|.-+-+-|.. +. +.++ .-..|. |-+.++-+..+..-+.+||+|-++..+....
T Consensus 76 ~~VLDlGcGtG~~s~~la~~~~V~gvD~s~m~~~a~~~~~~-~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~~~~~~~ 154 (265)
T 2oxt_A 76 GRVVDLGCGRGGWSYYAASRPHVMDVRAYTLGVGGHEVPRI-TESYGWNIVKFKSRVDIHTLPVERTDVIMCDVGESSPK 154 (265)
T ss_dssp EEEEEESCTTSHHHHHHHTSTTEEEEEEECCCCSSCCCCCC-CCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCCCSC
T ss_pred CEEEEeCcCCCHHHHHHHHcCcEEEEECchhhhhhhhhhhh-hhccCCCeEEEecccCHhHCCCCCCcEEEEeCcccCCc
Confidence 57999999999998888765 34333343420 00 1000 000010 0011111112112268999998875522100
Q ss_pred ---CCcCCccceeeeeccccccCc--EEEEe----CchhhHHHHHHHHhhcceeEEEee----cCCCceEEEEEe
Q 044932 623 ---SRCRQPVSIVVEMDRILRPGG--WAIVR----DKVEILDPLEGILRSLHWEIRMTY----AQDKEGILCAQK 684 (689)
Q Consensus 623 ---~~c~~~~~illEmDRILRP~G--~~iir----D~~~~l~~v~~i~~~lrW~~~~~~----~~~~E~iL~~~K 684 (689)
+.-..+ .+|-++.|+|+||| .+++. +..+++..++.+...+. .+.+.. ....|.+++|..
T Consensus 155 ~~~d~~~~l-~~L~~~~r~LkpGG~~~fv~kv~~~~~~~~~~~l~~l~~~f~-~v~~~k~~sR~~s~E~y~v~~~ 227 (265)
T 2oxt_A 155 WSVESERTI-KILELLEKWKVKNPSADFVVKVLCPYSVEVMERLSVMQRKWG-GGLVRNPYSRNSTHEMYFTSRA 227 (265)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHHHHHHHHHHC-CEEECCTTSCTTCCCEEEESSC
T ss_pred cchhHHHHH-HHHHHHHHHhccCCCeEEEEEeCCCCChhHHHHHHHHHHHcC-CEEEEEecccCCCccEEEEecC
Confidence 000001 25677899999999 88885 34434444444443322 222221 133577777743
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.0048 Score=63.07 Aligned_cols=103 Identities=10% Similarity=-0.001 Sum_probs=63.6
Q ss_pred ccCCCCCCeeEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhccccc-hhhccccCCC----CCCCccchhh
Q 044932 539 GLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDRGLV-GIYHDWCESF----GTYPRSYDLL 612 (689)
Q Consensus 539 ~l~~~~~~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~RGLi-g~yhdwce~f----~typrTyDLl 612 (689)
.+.+..+ ..|+|+++|.|.++..|....- .|+-++.. .-|.+.-++--- .+-.+|.+.- ...+.+||+|
T Consensus 40 ~l~l~~g--~~VLDlGcGtG~~a~~La~~g~---~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~V 114 (261)
T 3iv6_A 40 LENIVPG--STVAVIGASTRFLIEKALERGA---SVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFV 114 (261)
T ss_dssp TTTCCTT--CEEEEECTTCHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEE
T ss_pred hcCCCCc--CEEEEEeCcchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEE
Confidence 3444433 4799999999999999987642 34444432 333332222100 1223333211 1235789999
Q ss_pred ccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 613 HADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 613 Ha~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
-++.+|..+... . +..+|-+|-|+| |||.+++.-
T Consensus 115 v~~~~l~~~~~~-~-~~~~l~~l~~lL-PGG~l~lS~ 148 (261)
T 3iv6_A 115 LNDRLINRFTTE-E-ARRACLGMLSLV-GSGTVRASV 148 (261)
T ss_dssp EEESCGGGSCHH-H-HHHHHHHHHHHH-TTSEEEEEE
T ss_pred EEhhhhHhCCHH-H-HHHHHHHHHHhC-cCcEEEEEe
Confidence 999888765322 2 245788999999 999999973
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.0027 Score=61.62 Aligned_cols=96 Identities=10% Similarity=0.004 Sum_probs=57.8
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhccc---cchh-hccccCCCC---CCC--ccchhhccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDRG---LVGI-YHDWCESFG---TYP--RSYDLLHADHL 617 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~RG---Lig~-yhdwce~f~---typ--rTyDLlHa~~l 617 (689)
..|+|+++|.|.++..|....- +|+-++-. ..+...-.+- =|-+ -.|..+ ++ .|+ ..||+|.+..+
T Consensus 58 ~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~d~v~~~~~ 133 (245)
T 3ggd_A 58 LPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTAANISYRLLDGLV-PEQAAQIHSEIGDANIYMRTG 133 (245)
T ss_dssp SCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTC-HHHHHHHHHHHCSCEEEEESS
T ss_pred CeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCcccCceEEECcccc-cccccccccccCccEEEEcch
Confidence 4599999999999999876432 34444432 2332222221 0111 112221 11 111 23899999988
Q ss_pred cccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 618 FSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 618 fs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
|..... -. ...+|-++-|+|+|||+++|-+
T Consensus 134 ~~~~~~-~~-~~~~l~~~~~~LkpgG~l~i~~ 163 (245)
T 3ggd_A 134 FHHIPV-EK-RELLGQSLRILLGKQGAMYLIE 163 (245)
T ss_dssp STTSCG-GG-HHHHHHHHHHHHTTTCEEEEEE
T ss_pred hhcCCH-HH-HHHHHHHHHHHcCCCCEEEEEe
Confidence 876642 22 2568999999999999988775
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.0026 Score=64.58 Aligned_cols=45 Identities=20% Similarity=0.281 Sum_probs=34.3
Q ss_pred CCCccchhhcccccccccc---CCcCCccceeeeeccccccCcEEEEeC
Q 044932 604 TYPRSYDLLHADHLFSRLK---SRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 604 typrTyDLlHa~~lfs~~~---~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
..+.+||+|.+.+++.... .... +..+|-+|-|+|+|||++||..
T Consensus 173 ~~~~~fD~I~~~~vl~~ihl~~~~~~-~~~~l~~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 173 AQTPEYDVVLCLSLTKWVHLNWGDEG-LKRMFRRIYRHLRPGGILVLEP 220 (292)
T ss_dssp TCCCCEEEEEEESCHHHHHHHHHHHH-HHHHHHHHHHHEEEEEEEEEEC
T ss_pred ccCCCcCEEEEChHHHHhhhcCCHHH-HHHHHHHHHHHhCCCcEEEEec
Confidence 3578999999988874321 2234 3568999999999999999974
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.007 Score=59.60 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=58.2
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhc----ccc-----chhhccccCCCCCCCccchhhccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYD----RGL-----VGIYHDWCESFGTYPRSYDLLHADHL 617 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~----RGL-----ig~yhdwce~f~typrTyDLlHa~~l 617 (689)
..|||+++|.|.+|..|..... -+|+-++. |.-|...-+ .|+ .|-..+....| -..+||.|..+.+
T Consensus 62 ~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~FD~i~~D~~ 137 (236)
T 3orh_A 62 GRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTL--PDGHFDGILYDTY 137 (236)
T ss_dssp EEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGS--CTTCEEEEEECCC
T ss_pred CeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccc--cccCCceEEEeee
Confidence 4699999999999999987642 23333332 222322211 121 12222223333 3467999977666
Q ss_pred cccccC--CcCCccceeeeeccccccCcEEEEeC
Q 044932 618 FSRLKS--RCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 618 fs~~~~--~c~~~~~illEmDRILRP~G~~iirD 649 (689)
++.+.. .-. ...++-|+=|+|||||.+++-+
T Consensus 138 ~~~~~~~~~~~-~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 138 PLSEETWHTHQ-FNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CCBGGGTTTHH-HHHHHHTHHHHEEEEEEEEECC
T ss_pred ecccchhhhcc-hhhhhhhhhheeCCCCEEEEEe
Confidence 554432 223 3567889999999999998853
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=94.77 E-value=0.0018 Score=62.20 Aligned_cols=117 Identities=13% Similarity=0.094 Sum_probs=69.1
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhcc-cc--------------chhhccccCCCCCCC----c
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDR-GL--------------VGIYHDWCESFGTYP----R 607 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~R-GL--------------ig~yhdwce~f~typ----r 607 (689)
..|||.++|.|.++..|.+... +|+-++-. .-|.....| ++ .+-..=.|-.+..+| .
T Consensus 24 ~~vLD~GCG~G~~~~~la~~g~---~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~ 100 (203)
T 1pjz_A 24 ARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIG 100 (203)
T ss_dssp CEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHH
T ss_pred CEEEEeCCCCcHhHHHHHHCCC---eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCC
Confidence 3699999999999999987653 45555532 333333332 11 000111122222333 6
Q ss_pred cchhhccccccccccCCcCCccceeeeeccccccCcE--EEEeCch----------hhHHHHHHHHhhcceeEEE
Q 044932 608 SYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGW--AIVRDKV----------EILDPLEGILRSLHWEIRM 670 (689)
Q Consensus 608 TyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~--~iirD~~----------~~l~~v~~i~~~lrW~~~~ 670 (689)
+||+|-+.++|.... ... ...++-||-|+|||||. ++.-+-. -..+.++.+... .|++..
T Consensus 101 ~fD~v~~~~~l~~l~-~~~-~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~ 172 (203)
T 1pjz_A 101 HCAAFYDRAAMIALP-ADM-RERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTK 172 (203)
T ss_dssp SEEEEEEESCGGGSC-HHH-HHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEE
T ss_pred CEEEEEECcchhhCC-HHH-HHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEE
Confidence 899999887776543 222 23468899999999997 3332211 135677777776 677643
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.014 Score=57.47 Aligned_cols=98 Identities=14% Similarity=0.107 Sum_probs=56.1
Q ss_pred eEEeecCCcchhHHHHhccC--C-ceEEEeccCCC----CCchhhh----hcccc---chhhc-c-c-cCCCCCCCccch
Q 044932 548 RNVMDMKSIYGGFAAALAQQ--K-IWVMNVVPVHA----PDTLPVI----YDRGL---VGIYH-D-W-CESFGTYPRSYD 610 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~--~-vWVMNvvp~~~----~~tL~vI----~~RGL---ig~yh-d-w-ce~f~typrTyD 610 (689)
..|+|+++|.|.++..|... + .-|.-|=+... |..+... ...|+ |-+.+ | . .+.++..+.+||
T Consensus 45 ~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD 124 (275)
T 3bkx_A 45 EKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFD 124 (275)
T ss_dssp CEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTCCCS
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCCCEE
Confidence 47999999999999988754 2 33322222211 2244332 22233 21222 1 2 123333458999
Q ss_pred hhccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 611 LLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 611 LlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
+|++.++|....+. ..++-.+.++|+|||+++|.+
T Consensus 125 ~v~~~~~l~~~~~~----~~~~~~~~~l~~~gG~l~~~~ 159 (275)
T 3bkx_A 125 RVVLAHSLWYFASA----NALALLFKNMAAVCDHVDVAE 159 (275)
T ss_dssp EEEEESCGGGSSCH----HHHHHHHHHHTTTCSEEEEEE
T ss_pred EEEEccchhhCCCH----HHHHHHHHHHhCCCCEEEEEE
Confidence 99999998765432 233334455666699999964
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=94.74 E-value=0.0047 Score=59.27 Aligned_cols=128 Identities=17% Similarity=0.125 Sum_probs=70.1
Q ss_pred eeEEeecCCcchhHHHHhccC-C-ceEEEeccCCC-CCchhhh----hccccc---hhhc-cccCCCCCCC-----ccch
Q 044932 547 IRNVMDMKSIYGGFAAALAQQ-K-IWVMNVVPVHA-PDTLPVI----YDRGLV---GIYH-DWCESFGTYP-----RSYD 610 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~-~-vWVMNvvp~~~-~~tL~vI----~~RGLi---g~yh-dwce~f~typ-----rTyD 610 (689)
-++|+|+++|.|.++.+|... + -. +|+-++. +..+.+. -..|+- -+.+ |..+.++..+ .+||
T Consensus 70 ~~~vLdiG~G~G~~~~~la~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 70 AKKALDLGTFTGYSALALALALPADG--RVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTC--EEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCC--EEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 358999999999999988763 1 11 2333332 2222221 222431 1111 2222222222 6899
Q ss_pred hhccccccccccCCcCCccceeeeeccccccCcEEEEeCch------------hhHHHHHHH----HhhcceeEEEeecC
Q 044932 611 LLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKV------------EILDPLEGI----LRSLHWEIRMTYAQ 674 (689)
Q Consensus 611 LlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~------------~~l~~v~~i----~~~lrW~~~~~~~~ 674 (689)
+|.++.. ... ...++-++=|+|||||.+++.+.. .....++.+ ...-++.+.+..
T Consensus 148 ~v~~d~~------~~~-~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp-- 218 (229)
T 2avd_A 148 VAVVDAD------KEN-CSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLP-- 218 (229)
T ss_dssp EEEECSC------STT-HHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEEC--
T ss_pred EEEECCC------HHH-HHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEEEEe--
Confidence 9887654 122 134667777999999999996522 123333333 334456665542
Q ss_pred CCceEEEEEec
Q 044932 675 DKEGILCAQKT 685 (689)
Q Consensus 675 ~~E~iL~~~K~ 685 (689)
-.+++++++|.
T Consensus 219 ~~dGl~~~~k~ 229 (229)
T 2avd_A 219 LGDGLTLAFKI 229 (229)
T ss_dssp STTCEEEEEEC
T ss_pred cCCceEEEEEC
Confidence 24689999874
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=94.67 E-value=0.0018 Score=59.76 Aligned_cols=98 Identities=13% Similarity=0.154 Sum_probs=58.9
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhh----hhccccc----hhhccccCCCCCCCccchhhcccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPV----IYDRGLV----GIYHDWCESFGTYPRSYDLLHADHLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~v----I~~RGLi----g~yhdwce~f~typrTyDLlHa~~lf 618 (689)
.+|+|+++|.|.++.+|...+.. +|+-++-. ..+.. +-..|+- =+..|+.+.++..+..||+|.++..|
T Consensus 33 ~~vLDlGcG~G~~~~~l~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~ 110 (177)
T 2esr_A 33 GRVLDLFAGSGGLAIEAVSRGMS--AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY 110 (177)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCC--EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred CeEEEeCCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCCC
Confidence 47999999999999988776532 34444432 22221 1222321 11234444344456789999988776
Q ss_pred ccccCCcCCccceeeee--ccccccCcEEEEeCchh
Q 044932 619 SRLKSRCRQPVSIVVEM--DRILRPGGWAIVRDKVE 652 (689)
Q Consensus 619 s~~~~~c~~~~~illEm--DRILRP~G~~iirD~~~ 652 (689)
.. .. ...++-.+ -|+|+|||.+++.....
T Consensus 111 ~~----~~-~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 111 AK----ET-IVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp HH----HH-HHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred Cc----ch-HHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 32 11 13344444 49999999999975443
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.077 Score=54.61 Aligned_cols=122 Identities=15% Similarity=0.041 Sum_probs=65.4
Q ss_pred cchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCcE-Ee
Q 044932 285 FKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPAV-VS 359 (689)
Q Consensus 285 F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~i-~~ 359 (689)
|..++..-+..|.+.. .+.. ..+|||+||++|+|+.+.+.. .|.++|+-+....+.++ ....|-..+ +.
T Consensus 59 yrSRa~~KL~ei~ek~-~l~~---g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~--~~s~gwn~v~fk 132 (267)
T 3p8z_A 59 AVSRGSAKLQWFVERN-MVIP---EGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVP--MSTYGWNIVKLM 132 (267)
T ss_dssp CSSTHHHHHHHHHHTT-SSCC---CEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCC--CCCTTTTSEEEE
T ss_pred ccchHHHHHHHHHHhc-CCCC---CCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcch--hhhcCcCceEEE
Confidence 3344433344444433 3443 459999999999999866643 48899987742211110 011232322 22
Q ss_pred cC-CCCCCCCCCCCcceEEeccc---cccccccH--HHHHHHHHhccCCCcEEEEEcCCCch
Q 044932 360 PL-GNRRLPFPSGVFDAIHCDGC---SITWHAHG--GKLLLEMNRILRPSGYFILSTKHDSI 415 (689)
Q Consensus 360 ~~-dt~~LPFpD~SFDlVhcs~c---li~W~~d~--~~aL~EI~RVLRPGG~fVIsdp~~~l 415 (689)
.. |...++ ...||.|+|-.. -.++.+.. ..+|.=+.+.|++ |-|++-.-.++.
T Consensus 133 ~gvDv~~~~--~~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~ 191 (267)
T 3p8z_A 133 SGKDVFYLP--PEKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYM 191 (267)
T ss_dssp CSCCGGGCC--CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCS
T ss_pred eccceeecC--CccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCC
Confidence 22 433332 256999999531 12222111 1244455688998 788887655444
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.0068 Score=59.16 Aligned_cols=71 Identities=15% Similarity=0.170 Sum_probs=45.0
Q ss_pred ccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeCc------------hhhHHHHHHH----HhhcceeEEE
Q 044932 607 RSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDK------------VEILDPLEGI----LRSLHWEIRM 670 (689)
Q Consensus 607 rTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~------------~~~l~~v~~i----~~~lrW~~~~ 670 (689)
.+||+|.+++.... ...++-++-|+|||||.+++.+- ......++.+ ...-++.+.+
T Consensus 146 ~~fD~I~~~~~~~~-------~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (239)
T 2hnk_A 146 SSIDLFFLDADKEN-------YPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVYNDSLVDVSL 218 (239)
T ss_dssp TCEEEEEECSCGGG-------HHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred CCcCEEEEeCCHHH-------HHHHHHHHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHHHHHHhhCCCeEEEE
Confidence 68999977643222 13467778899999999999861 1123333333 3445566665
Q ss_pred eecCCCceEEEEEecc
Q 044932 671 TYAQDKEGILCAQKTM 686 (689)
Q Consensus 671 ~~~~~~E~iL~~~K~~ 686 (689)
.- -..++.+++|++
T Consensus 219 ~p--~~~g~~~~~~~~ 232 (239)
T 2hnk_A 219 VP--IADGVSLVRKRL 232 (239)
T ss_dssp EC--STTCEEEEEECC
T ss_pred EE--cCCceEeeeehh
Confidence 42 236799999875
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.015 Score=57.53 Aligned_cols=111 Identities=14% Similarity=0.168 Sum_probs=63.3
Q ss_pred eEEeecCCcchhHHHHhccC-----CceEEEeccCCC-CCchhhhhcccc---ch-hhccccCC--CCCCCc-cchhhcc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-----KIWVMNVVPVHA-PDTLPVIYDRGL---VG-IYHDWCES--FGTYPR-SYDLLHA 614 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-----~vWVMNvvp~~~-~~tL~vI~~RGL---ig-~yhdwce~--f~typr-TyDLlHa 614 (689)
..|+|+++|.|++++.|... +-. .|+-++- +.-+.+. |++ |= +..|..+. ++..+. +||+|+.
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~--~V~gvD~s~~~l~~a--~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~ 158 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMGIDC--QVIGIDRDLSRCQIP--ASDMENITLHQGDCSDLTTFEHLREMAHPLIFI 158 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCC--EEEEEESCCTTCCCC--GGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEE
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcCCCC--EEEEEeCChHHHHHH--hccCCceEEEECcchhHHHHHhhccCCCCEEEE
Confidence 47999999999999988653 211 1333322 1111111 122 11 11233332 222233 6999997
Q ss_pred ccccccccCCcCCccceeeeecc-ccccCcEEEEeCch-----hhHHHHHHHHhhc--ceeEE
Q 044932 615 DHLFSRLKSRCRQPVSIVVEMDR-ILRPGGWAIVRDKV-----EILDPLEGILRSL--HWEIR 669 (689)
Q Consensus 615 ~~lfs~~~~~c~~~~~illEmDR-ILRP~G~~iirD~~-----~~l~~v~~i~~~l--rW~~~ 669 (689)
++.- -. ...+|-++-| +|+|||++++.|.. .--..+..+++.. ++...
T Consensus 159 d~~~------~~-~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~~ 214 (236)
T 2bm8_A 159 DNAH------AN-TFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMD 214 (236)
T ss_dssp ESSC------SS-HHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEEE
T ss_pred CCch------Hh-HHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEEc
Confidence 6541 14 3567889998 99999999997631 1123566666666 56553
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=94.51 E-value=0.0076 Score=57.86 Aligned_cols=128 Identities=14% Similarity=0.156 Sum_probs=67.2
Q ss_pred eEEeecCCcchhHHHHhccCCceE--EEeccCCCCCchhhhhccccchhhccccCCCCC-------CC----ccchhhcc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWV--MNVVPVHAPDTLPVIYDRGLVGIYHDWCESFGT-------YP----RSYDLLHA 614 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWV--MNvvp~~~~~tL~vI~~RGLig~yhdwce~f~t-------yp----rTyDLlHa 614 (689)
.+|+|+++|.|+|+..|....--| +-+.|... + .|+.=+-.|..+. .+ ++ .+||+|-+
T Consensus 27 ~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~---~-----~~v~~~~~D~~~~-~~~~~~~~~~~~~~~~~~D~Vls 97 (191)
T 3dou_A 27 DAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEE---I-----AGVRFIRCDIFKE-TIFDDIDRALREEGIEKVDDVVS 97 (191)
T ss_dssp CEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCC---C-----TTCEEEECCTTSS-SHHHHHHHHHHHHTCSSEEEEEE
T ss_pred CEEEEEeecCCHHHHHHHHcCCcEEEEecccccc---C-----CCeEEEEccccCH-HHHHHHHHHhhcccCCcceEEec
Confidence 579999999999999998764322 22222211 1 1211112232221 11 11 38999988
Q ss_pred ccccccccCC-------cCCccceeeeeccccccCcEEEEeC-chhhHHHHHHHHhhcceeEEEee-----cCCCceEEE
Q 044932 615 DHLFSRLKSR-------CRQPVSIVVEMDRILRPGGWAIVRD-KVEILDPLEGILRSLHWEIRMTY-----AQDKEGILC 681 (689)
Q Consensus 615 ~~lfs~~~~~-------c~~~~~illEmDRILRP~G~~iirD-~~~~l~~v~~i~~~lrW~~~~~~-----~~~~E~iL~ 681 (689)
+.-....... -.+.+.+|-++-|+|||||.+++-- ...-...+..+++..==++.+.. ....|.++|
T Consensus 98 d~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~F~~v~~~kP~asR~~s~E~y~v 177 (191)
T 3dou_A 98 DAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKNFSSYKISKPPASRGSSSEIYIM 177 (191)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGGEEEEEEECC------CCEEEEE
T ss_pred CCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHhcCEEEEECCCCccCCCceEEEE
Confidence 7643211100 0001346777889999999998752 11122344444443312233331 134799999
Q ss_pred EEe
Q 044932 682 AQK 684 (689)
Q Consensus 682 ~~K 684 (689)
|+.
T Consensus 178 ~~~ 180 (191)
T 3dou_A 178 FFG 180 (191)
T ss_dssp EEE
T ss_pred Eee
Confidence 975
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.0095 Score=57.75 Aligned_cols=135 Identities=12% Similarity=0.125 Sum_probs=70.3
Q ss_pred cCCCCCCeeEEeecCCcchhHHHHhccC--CceEEEeccCCCC-C----chhhhhcc-ccchhhccccCC--CCCCCccc
Q 044932 540 LGIDWSKIRNVMDMKSIYGGFAAALAQQ--KIWVMNVVPVHAP-D----TLPVIYDR-GLVGIYHDWCES--FGTYPRSY 609 (689)
Q Consensus 540 l~~~~~~iRNvmDMna~~GgFAAal~~~--~vWVMNvvp~~~~-~----tL~vI~~R-GLig~yhdwce~--f~typrTy 609 (689)
+.+..+ ..|+|+++|.|+|+..|... +-. .|+-++-. . .+...-.+ ++.-+..|..+. ++..+.+|
T Consensus 73 ~~~~~~--~~vLDlG~G~G~~~~~la~~~g~~~--~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~ 148 (233)
T 2ipx_A 73 IHIKPG--AKVLYLGAASGTTVSHVSDIVGPDG--LVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMV 148 (233)
T ss_dssp CCCCTT--CEEEEECCTTSHHHHHHHHHHCTTC--EEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCE
T ss_pred ecCCCC--CEEEEEcccCCHHHHHHHHHhCCCc--EEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcE
Confidence 344433 47999999999999988754 211 12222221 1 11111111 222222333331 23345789
Q ss_pred hhhccccccccccCCcCCccceeeeeccccccCcEEEEeCchh----------hHHHHHHHHhhcceeEEE-ee--cC-C
Q 044932 610 DLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVE----------ILDPLEGILRSLHWEIRM-TY--AQ-D 675 (689)
Q Consensus 610 DLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~~----------~l~~v~~i~~~lrW~~~~-~~--~~-~ 675 (689)
|+|.++.. .......++.++-|+|+|||.++|.=... ++.+-..++....|...- .. .. .
T Consensus 149 D~V~~~~~------~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~ 222 (233)
T 2ipx_A 149 DVIFADVA------QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYER 222 (233)
T ss_dssp EEEEECCC------CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEEECTTTSS
T ss_pred EEEEEcCC------CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEEEecCCccC
Confidence 99988543 12211234667999999999999953221 132324555666676543 21 11 1
Q ss_pred CceEEEEEe
Q 044932 676 KEGILCAQK 684 (689)
Q Consensus 676 ~E~iL~~~K 684 (689)
.--++++++
T Consensus 223 ~~~~v~~~~ 231 (233)
T 2ipx_A 223 DHAVVVGVY 231 (233)
T ss_dssp SEEEEEEEE
T ss_pred CcEEEEEEe
Confidence 234666665
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.0053 Score=62.03 Aligned_cols=97 Identities=9% Similarity=0.137 Sum_probs=55.3
Q ss_pred EEeecCCcchhHHHHhccC---CceEEEeccCCCC-Cchhh----hhccccchhhccccCCCCCCC-ccchhhccccccc
Q 044932 549 NVMDMKSIYGGFAAALAQQ---KIWVMNVVPVHAP-DTLPV----IYDRGLVGIYHDWCESFGTYP-RSYDLLHADHLFS 619 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~---~vWVMNvvp~~~~-~tL~v----I~~RGLig~yhdwce~f~typ-rTyDLlHa~~lfs 619 (689)
.|+|+++|+|.++.+|... +=+ +|+=++-. .-|.. +-..|+..-..=.|.-+..+| ..||+|-+..+|.
T Consensus 73 ~vLDlGcGtG~~~~~la~~~~~~~~--~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~~l~ 150 (261)
T 4gek_A 73 QVYDLGCSLGAATLSVRRNIHHDNC--KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQ 150 (261)
T ss_dssp EEEEETCTTTHHHHHHHHTCCSSSC--EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEESCGG
T ss_pred EEEEEeCCCCHHHHHHHHhcCCCCC--EEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeeeeee
Confidence 6999999999999888643 211 23333321 22221 112233221111122122222 4599998887776
Q ss_pred cccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 620 RLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 620 ~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
.... -. ...+|-+|-|+|+|||.+||.|
T Consensus 151 ~~~~-~~-~~~~l~~i~~~LkpGG~lii~e 178 (261)
T 4gek_A 151 FLEP-SE-RQALLDKIYQGLNPGGALVLSE 178 (261)
T ss_dssp GSCH-HH-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ecCc-hh-HhHHHHHHHHHcCCCcEEEEEe
Confidence 4422 12 1347889999999999999975
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=94.35 E-value=0.0025 Score=57.69 Aligned_cols=95 Identities=11% Similarity=0.111 Sum_probs=55.2
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhh----hcccc-chhh-ccccCCCCCCC---ccchhhccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVI----YDRGL-VGIY-HDWCESFGTYP---RSYDLLHADHL 617 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI----~~RGL-ig~y-hdwce~f~typ---rTyDLlHa~~l 617 (689)
..|+|+++|.|.++.+|.....- |+-++.. ..+... -..|+ +-++ .|+.+.++.++ .+||+|.++..
T Consensus 43 ~~vLD~GcG~G~~~~~l~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 119 (171)
T 1ws6_A 43 GRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP 119 (171)
T ss_dssp CEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CeEEEeCCCcCHHHHHHHHCCCe---EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCC
Confidence 46999999999999988765322 4444432 222211 11232 1111 22222222222 37999999887
Q ss_pred cccccCCcCCccceeeeec--cccccCcEEEEeCch
Q 044932 618 FSRLKSRCRQPVSIVVEMD--RILRPGGWAIVRDKV 651 (689)
Q Consensus 618 fs~~~~~c~~~~~illEmD--RILRP~G~~iirD~~ 651 (689)
|. . . ...++-.+- |+|+|||.+++....
T Consensus 120 ~~--~---~-~~~~~~~~~~~~~L~~gG~~~~~~~~ 149 (171)
T 1ws6_A 120 YA--M---D-LAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp TT--S---C-TTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred Cc--h---h-HHHHHHHHHhhcccCCCcEEEEEeCC
Confidence 76 1 1 134455555 999999999997543
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.0087 Score=58.74 Aligned_cols=128 Identities=11% Similarity=0.089 Sum_probs=72.3
Q ss_pred EEeecCCcchhHHHHhccC---CceEEEeccCCCC-Cchh----hhhccccc----hhh-ccccCCCCCC-Cccchhhcc
Q 044932 549 NVMDMKSIYGGFAAALAQQ---KIWVMNVVPVHAP-DTLP----VIYDRGLV----GIY-HDWCESFGTY-PRSYDLLHA 614 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~---~vWVMNvvp~~~~-~tL~----vI~~RGLi----g~y-hdwce~f~ty-prTyDLlHa 614 (689)
+|+|+++|.|.++.+|... ..- |+-++.. ..+. .+-..|+- -+. -|..+.++.+ +.+||+|-.
T Consensus 59 ~vLdiG~G~G~~~~~la~~~~~~~~---v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~ 135 (221)
T 3dr5_A 59 GAIAITPAAGLVGLYILNGLADNTT---LTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFG 135 (221)
T ss_dssp EEEEESTTHHHHHHHHHHHSCTTSE---EEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEE
T ss_pred CEEEEcCCchHHHHHHHHhCCCCCE---EEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEE
Confidence 7999999999998888652 221 3333321 1221 12222332 111 1222333344 578999976
Q ss_pred ccccccccCCcCCccceeeeeccccccCcEEEEeCch------------hhHHHHHHHHhhcceeEEE--eecCCCceEE
Q 044932 615 DHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKV------------EILDPLEGILRSLHWEIRM--TYAQDKEGIL 680 (689)
Q Consensus 615 ~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~------------~~l~~v~~i~~~lrW~~~~--~~~~~~E~iL 680 (689)
+.-...+ ..++-++-|+|||||++++.|-. .....++.+...+++.-++ .-..-.++++
T Consensus 136 d~~~~~~-------~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~gdGl~ 208 (221)
T 3dr5_A 136 QVSPMDL-------KALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLPLGAGLT 208 (221)
T ss_dssp CCCTTTH-------HHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEESSTTCEE
T ss_pred cCcHHHH-------HHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEeeccchHH
Confidence 6432221 33566777999999999997532 1233556666666665222 1123357899
Q ss_pred EEEecc
Q 044932 681 CAQKTM 686 (689)
Q Consensus 681 ~~~K~~ 686 (689)
+++|.+
T Consensus 209 ~~~~~~ 214 (221)
T 3dr5_A 209 VVTKAL 214 (221)
T ss_dssp EEEECC
T ss_pred HHHHHH
Confidence 999875
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.01 Score=59.71 Aligned_cols=117 Identities=13% Similarity=0.029 Sum_probs=70.3
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhcc-cc-------------------chhhccccCCCCCCC
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDR-GL-------------------VGIYHDWCESFGTYP 606 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~R-GL-------------------ig~yhdwce~f~typ 606 (689)
..|||.++|.|.++..|.+... +|+-++.. .-+.....+ ++ -+-..=.|-.+...|
T Consensus 70 ~~vLD~GCG~G~~~~~La~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~ 146 (252)
T 2gb4_A 70 LRVFFPLCGKAIEMKWFADRGH---TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLP 146 (252)
T ss_dssp CEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGG
T ss_pred CeEEEeCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCC
Confidence 3699999999999999988764 46655543 222222211 11 000011122222222
Q ss_pred ----ccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeC---------ch---hhHHHHHHHHhhcceeEEE
Q 044932 607 ----RSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD---------KV---EILDPLEGILRSLHWEIRM 670 (689)
Q Consensus 607 ----rTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD---------~~---~~l~~v~~i~~~lrW~~~~ 670 (689)
.+||+|-+.++|.... ... ...++-+|-|+|+|||.++|-. .. -..+.+..++.. .|++..
T Consensus 147 ~~~~~~FD~V~~~~~l~~l~-~~~-~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~~ 223 (252)
T 2gb4_A 147 RANIGKFDRIWDRGALVAIN-PGD-HDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQC 223 (252)
T ss_dssp GGCCCCEEEEEESSSTTTSC-GGG-HHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEEE
T ss_pred cccCCCEEEEEEhhhhhhCC-HHH-HHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEEE
Confidence 7899999888887653 223 2457889999999999986321 11 134677777765 377644
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.0034 Score=60.81 Aligned_cols=93 Identities=16% Similarity=0.231 Sum_probs=57.3
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCCC-Cchhhhhcc----cc---chh-hccccCCCCCC--Cccchhhccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-DTLPVIYDR----GL---VGI-YHDWCESFGTY--PRSYDLLHAD 615 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-~tL~vI~~R----GL---ig~-yhdwce~f~ty--prTyDLlHa~ 615 (689)
..|+|+++|.|.++.+|... +- -+|+-++.. ..+...-.+ |+ |-+ ..|..+.++.. +.+||+|-++
T Consensus 56 ~~vLdiG~G~G~~~~~la~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 133 (233)
T 2gpy_A 56 ARILEIGTAIGYSAIRMAQALPE--ATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFID 133 (233)
T ss_dssp SEEEEECCTTSHHHHHHHHHCTT--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred CEEEEecCCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence 47999999999999888753 11 124444432 333322222 43 211 22333322333 5789999877
Q ss_pred cccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 616 HLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 616 ~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
..++ . ...+|-++-|+|+|||.+++.+
T Consensus 134 ~~~~------~-~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 134 AAKG------Q-YRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp GGGS------C-HHHHHHHHGGGEEEEEEEEEET
T ss_pred CCHH------H-HHHHHHHHHHHcCCCeEEEEEc
Confidence 6643 2 2457788889999999999975
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.0064 Score=63.67 Aligned_cols=96 Identities=15% Similarity=0.181 Sum_probs=60.8
Q ss_pred CCeeEEeecCCcchhHHHHhccC--CceEEEeccCCCCCchhhhhc-cccchhhccccCCCCCCCccchhhccccccccc
Q 044932 545 SKIRNVMDMKSIYGGFAAALAQQ--KIWVMNVVPVHAPDTLPVIYD-RGLVGIYHDWCESFGTYPRSYDLLHADHLFSRL 621 (689)
Q Consensus 545 ~~iRNvmDMna~~GgFAAal~~~--~vWVMNvvp~~~~~tL~vI~~-RGLig~yhdwce~f~typrTyDLlHa~~lfs~~ 621 (689)
.....|+|+++|.|.++.+|... .+-+. -++-|..+...-. .++--+-+|..++ +|. ||+|.+.++|..+
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~---~~D~~~~~~~a~~~~~v~~~~~d~~~~---~~~-~D~v~~~~~lh~~ 280 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLIKGI---NFDLPQVIENAPPLSGIEHVGGDMFAS---VPQ-GDAMILKAVCHNW 280 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEE---EEECHHHHTTCCCCTTEEEEECCTTTC---CCC-EEEEEEESSGGGS
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCeEE---EeChHHHHHhhhhcCCCEEEeCCcccC---CCC-CCEEEEecccccC
Confidence 34678999999999999999753 33332 1111111111100 1222223344443 555 9999999999877
Q ss_pred cCCcCCccceeeeeccccccCcEEEEeC
Q 044932 622 KSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 622 ~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
.+.-. ..+|-++=|+|+|||.++|-|
T Consensus 281 ~d~~~--~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 281 SDEKC--IEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp CHHHH--HHHHHHHHHHEEEEEEEEEEE
T ss_pred CHHHH--HHHHHHHHHhcCCCCEEEEEE
Confidence 65321 258999999999999999874
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.24 E-value=0.058 Score=55.17 Aligned_cols=75 Identities=13% Similarity=0.215 Sum_probs=47.4
Q ss_pred CCCCCcceEEecc--c-ccc----------------ccccHHHHHHHHHhccCCCcEEEEEcCCCc-----------hhH
Q 044932 368 FPSGVFDAIHCDG--C-SIT----------------WHAHGGKLLLEMNRILRPSGYFILSTKHDS-----------IEE 417 (689)
Q Consensus 368 FpD~SFDlVhcs~--c-li~----------------W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~-----------le~ 417 (689)
+++++||+|++.- . ... |......++.++.|+|||||.+++...... +..
T Consensus 36 l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~~~~~~~~g~~~~~~~ 115 (297)
T 2zig_A 36 FPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDVAVARRRFGRHLVFPL 115 (297)
T ss_dssp SCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCEEEECC----EEEECH
T ss_pred CCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCCccccccCCccccccc
Confidence 5678999998852 1 000 111224578899999999999988754211 111
Q ss_pred HHHHHHHHHhcceeEEEeeccccCceeEEEEEeCC
Q 044932 418 EEALTTLTASICWNILAHKTDEISEMGVKIYQKPE 452 (689)
Q Consensus 418 ~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqKp~ 452 (689)
...+..+++..+|.... ..||.|+.
T Consensus 116 ~~~l~~~~~~~Gf~~~~----------~iiW~K~~ 140 (297)
T 2zig_A 116 HADIQVRCRKLGFDNLN----------PIIWHKHT 140 (297)
T ss_dssp HHHHHHHHHHTTCEEEE----------EEEEECC-
T ss_pred HHHHHHHHHHcCCeeec----------cEEEeCCC
Confidence 23466778888987653 36899974
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.016 Score=59.72 Aligned_cols=99 Identities=12% Similarity=0.123 Sum_probs=57.6
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhcc----ccc------h-hh-cccc------CCCC--CCC
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDR----GLV------G-IY-HDWC------ESFG--TYP 606 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~R----GLi------g-~y-hdwc------e~f~--typ 606 (689)
..|||+++|.|+.++.+.....+ +|+=++.. .-|.+.-.| |+- . .| +..+ +.++ ..+
T Consensus 50 ~~VLDlGCG~G~~l~~~~~~~~~--~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 50 RKVLAIDFGNGADLEKYFYGEIA--LLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp CEEEETTCTTTTTHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CeEEEEecCCcHhHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 56999999999987776655543 35555543 333322222 210 0 01 1112 2221 235
Q ss_pred ccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 607 RSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 607 rTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
.+||+|-+..+|-..-+.-. ...+|-+|-|+|+|||++|+..
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~-~~~~l~~~~r~LkpGG~~i~~~ 169 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRH-YATVMNNLSELTASGGKVLITT 169 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTT-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCeeEEEECchHHHhCCHHH-HHHHHHHHHHHcCCCCEEEEEe
Confidence 89999987655432111113 2567999999999999999874
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.0045 Score=59.43 Aligned_cols=87 Identities=18% Similarity=0.215 Sum_probs=50.9
Q ss_pred eEEeecCCcchhHHHHhccC--C-ceEEEeccCCC-CCchhhhh----cccc-------ch-hhccccCCCCCCCccchh
Q 044932 548 RNVMDMKSIYGGFAAALAQQ--K-IWVMNVVPVHA-PDTLPVIY----DRGL-------VG-IYHDWCESFGTYPRSYDL 611 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~--~-vWVMNvvp~~~-~~tL~vI~----~RGL-------ig-~yhdwce~f~typrTyDL 611 (689)
..|+|+++|.|++++.|... + . +|+-++- +..+...- ..|+ |- +..|..+.+ .-+.+||+
T Consensus 79 ~~vLDiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~ 154 (226)
T 1i1n_A 79 AKALDVGSGSGILTACFARMVGCTG---KVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY-AEEAPYDA 154 (226)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC-GGGCCEEE
T ss_pred CEEEEEcCCcCHHHHHHHHHhCCCc---EEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCc-ccCCCcCE
Confidence 47999999999999988642 1 1 2333322 12222211 1111 11 122333222 22468999
Q ss_pred hccccccccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 612 LHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 612 lHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
|+++..+. .++-++-|+|+|||.+++-
T Consensus 155 i~~~~~~~----------~~~~~~~~~LkpgG~lv~~ 181 (226)
T 1i1n_A 155 IHVGAAAP----------VVPQALIDQLKPGGRLILP 181 (226)
T ss_dssp EEECSBBS----------SCCHHHHHTEEEEEEEEEE
T ss_pred EEECCchH----------HHHHHHHHhcCCCcEEEEE
Confidence 99877652 3456778999999999986
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=94.12 E-value=0.013 Score=57.69 Aligned_cols=114 Identities=15% Similarity=0.160 Sum_probs=62.1
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCCC-Cchhhhhcc------------ccchh---hccccCCCC--CCCcc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-DTLPVIYDR------------GLVGI---YHDWCESFG--TYPRS 608 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-~tL~vI~~R------------GLig~---yhdwce~f~--typrT 608 (689)
..|+|+++|.|+|+.+|... +- .+|+-++-. .-+...-.+ |+-.+ -.|..+.++ .-+.+
T Consensus 51 ~~vLDiGcG~G~~~~~la~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~ 128 (246)
T 2vdv_E 51 VTIADIGCGFGGLMIDLSPAFPE--DLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ 128 (246)
T ss_dssp EEEEEETCTTSHHHHHHHHHSTT--SEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred CEEEEEcCCCCHHHHHHHHhCCC--CCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence 57999999999999888653 21 134444422 222222111 43221 122222222 12456
Q ss_pred chhhccccccc-cc------cCCcCCccceeeeeccccccCcEEEEe-CchhhHHHHHHHHhhcce
Q 044932 609 YDLLHADHLFS-RL------KSRCRQPVSIVVEMDRILRPGGWAIVR-DKVEILDPLEGILRSLHW 666 (689)
Q Consensus 609 yDLlHa~~lfs-~~------~~~c~~~~~illEmDRILRP~G~~iir-D~~~~l~~v~~i~~~lrW 666 (689)
+|.|... |. .+ +.+-. ...+|-++-|+|+|||.+++. |..++.+.+...+....+
T Consensus 129 ~d~v~~~--~p~p~~k~~~~~~r~~-~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~ 191 (246)
T 2vdv_E 129 LSKMFFC--FPDPHFKQRKHKARII-TNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHPL 191 (246)
T ss_dssp EEEEEEE--SCCCC------CSSCC-CHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHHSTT
T ss_pred cCEEEEE--CCCcccccchhHHhhc-cHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHhCcC
Confidence 6766422 22 11 11111 146888999999999998885 766677767666544433
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=94.09 E-value=0.028 Score=57.37 Aligned_cols=128 Identities=12% Similarity=0.176 Sum_probs=78.2
Q ss_pred EEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhh----hcccc---chh-hccccCCCCCCCccc---hhhcccc
Q 044932 549 NVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVI----YDRGL---VGI-YHDWCESFGTYPRSY---DLLHADH 616 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI----~~RGL---ig~-yhdwce~f~typrTy---DLlHa~~ 616 (689)
.|+|+++|.|.++.+|...+-+ +|+-++- +..|.+. -..|+ |-+ ..||.+.+ +.+| |+|-++-
T Consensus 126 ~vLDlG~GsG~~~~~la~~~~~--~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~---~~~f~~~D~IvsnP 200 (284)
T 1nv8_A 126 TVADIGTGSGAIGVSVAKFSDA--IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF---KEKFASIEMILSNP 200 (284)
T ss_dssp EEEEESCTTSHHHHHHHHHSSC--EEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG---GGGTTTCCEEEECC
T ss_pred EEEEEeCchhHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc---ccccCCCCEEEEcC
Confidence 6999999999999998765333 2443333 2233222 12244 222 23555543 4678 9998762
Q ss_pred cccccc----------------CCcCCccceeeeec-cccccCcEEEEeCchhhHHHHHHHHhhcceeEEEeecCCCceE
Q 044932 617 LFSRLK----------------SRCRQPVSIVVEMD-RILRPGGWAIVRDKVEILDPLEGILRSLHWEIRMTYAQDKEGI 679 (689)
Q Consensus 617 lfs~~~----------------~~c~~~~~illEmD-RILRP~G~~iirD~~~~l~~v~~i~~~lrW~~~~~~~~~~E~i 679 (689)
-+.... ..++- ..++-++= +.|+|||++++-=..+--..|..++... ....|..+.+++
T Consensus 201 Pyi~~~~~l~~~v~~ep~~al~~~~dg-l~~~~~i~~~~l~pgG~l~~e~~~~q~~~v~~~~~~~---~~~~D~~g~~R~ 276 (284)
T 1nv8_A 201 PYVKSSAHLPKDVLFEPPEALFGGEDG-LDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDT---VFLKDSAGKYRF 276 (284)
T ss_dssp CCBCGGGSCTTSCCCSCHHHHBCTTTS-CHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTC---EEEECTTSSEEE
T ss_pred CCCCcccccChhhccCcHHHhcCCCcH-HHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHHhC---CeecccCCCceE
Confidence 222111 11221 24566777 8999999999986666666777777665 333456678899
Q ss_pred EEEEec
Q 044932 680 LCAQKT 685 (689)
Q Consensus 680 L~~~K~ 685 (689)
+++.++
T Consensus 277 ~~~~~k 282 (284)
T 1nv8_A 277 LLLNRR 282 (284)
T ss_dssp EEEECC
T ss_pred EEEEEc
Confidence 988875
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=93.98 E-value=0.034 Score=55.60 Aligned_cols=118 Identities=8% Similarity=0.017 Sum_probs=67.4
Q ss_pred eeEEeecCCcchhHHHHhccC-CceEEEeccCCCC-Cchhh----hhc---ccc---chhhccccCCC-C------CCCc
Q 044932 547 IRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-DTLPV----IYD---RGL---VGIYHDWCESF-G------TYPR 607 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-~tL~v----I~~---RGL---ig~yhdwce~f-~------typr 607 (689)
-.+|+|+++|.|.++..|... +- .+|+-++-. ..+.. +.. .|+ |-+++.=...+ + .-+.
T Consensus 37 ~~~VLDlG~G~G~~~l~la~~~~~--~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 114 (260)
T 2ozv_A 37 ACRIADLGAGAGAAGMAVAARLEK--AEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE 114 (260)
T ss_dssp CEEEEECCSSSSHHHHHHHHHCTT--EEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred CCEEEEeCChHhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence 357999999999998877654 21 123333321 11111 111 233 22232222222 1 1257
Q ss_pred cchhhccccccccc---------------cCCcCCccceeeeeccccccCcEEEEeCchhhHHHHHHHHhhcceeE
Q 044932 608 SYDLLHADHLFSRL---------------KSRCRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGILRSLHWEI 668 (689)
Q Consensus 608 TyDLlHa~~lfs~~---------------~~~c~~~~~illEmDRILRP~G~~iirD~~~~l~~v~~i~~~lrW~~ 668 (689)
+||+|-++--|... ...+. +..++-++-|+|+|||.+++--..+-+..+..+++.. |..
T Consensus 115 ~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~-~~~ 188 (260)
T 2ozv_A 115 HFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGL-FEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGSR-FGG 188 (260)
T ss_dssp CEEEEEECCCC---------------------CC-HHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHTTT-EEE
T ss_pred CcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCC-HHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHHhc-CCc
Confidence 89999998444321 22344 3677888999999999998876666677777777663 653
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.012 Score=58.02 Aligned_cols=129 Identities=12% Similarity=0.124 Sum_probs=70.8
Q ss_pred eeEEeecCCcchhHHHHhccC-C-ceEEEeccCCC-CCchhh----hhccccch---hh-ccccCCCCCC------Cccc
Q 044932 547 IRNVMDMKSIYGGFAAALAQQ-K-IWVMNVVPVHA-PDTLPV----IYDRGLVG---IY-HDWCESFGTY------PRSY 609 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~-~-vWVMNvvp~~~-~~tL~v----I~~RGLig---~y-hdwce~f~ty------prTy 609 (689)
-++|+|+++|.|+++.+|... + -. .|+-++- +..+.+ +-..|+-. +. .|..+.++.+ +.+|
T Consensus 71 ~~~VLeiG~G~G~~~~~la~~~~~~~--~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 71 AKKTIEVGVFTGYSLLLTALSIPDDG--KITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp CCEEEEECCTTSHHHHHHHHHSCTTC--EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 468999999999998887642 1 11 2333332 122221 22234421 11 1333333333 5789
Q ss_pred hhhccccccccccCCcCCccceeeeeccccccCcEEEEeCch-----------------hhHHHHHHHHhh----cceeE
Q 044932 610 DLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKV-----------------EILDPLEGILRS----LHWEI 668 (689)
Q Consensus 610 DLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~-----------------~~l~~v~~i~~~----lrW~~ 668 (689)
|+|-.++--. . ...++-++-|+|||||.+++.+.. .+...++.+.+. =++.+
T Consensus 149 D~I~~d~~~~------~-~~~~l~~~~~~L~pGG~lv~d~~~~~g~~~~~~~~~~~~~r~~~~~i~~~~~~l~~~~~~~~ 221 (237)
T 3c3y_A 149 DFGFVDADKP------N-YIKYHERLMKLVKVGGIVAYDNTLWGGTVAQPESEVPDFMKENREAVIELNKLLAADPRIEI 221 (237)
T ss_dssp EEEEECSCGG------G-HHHHHHHHHHHEEEEEEEEEECTTGGGGGGSCGGGSCGGGHHHHHHHHHHHHHHHHCTTEEE
T ss_pred CEEEECCchH------H-HHHHHHHHHHhcCCCeEEEEecCCcCCccCCCcccchhhHHHHHHHHHHHHHHHhcCCCeEE
Confidence 9998764322 1 234566677999999999998621 012334344433 34444
Q ss_pred EEeecCCCceEEEEEecc
Q 044932 669 RMTYAQDKEGILCAQKTM 686 (689)
Q Consensus 669 ~~~~~~~~E~iL~~~K~~ 686 (689)
.+. ....++++++|.+
T Consensus 222 ~~l--p~~dG~~~~~~~~ 237 (237)
T 3c3y_A 222 VHL--PLGDGITFCRRLY 237 (237)
T ss_dssp EEE--CSTTCEEEEEECC
T ss_pred EEE--EeCCceEEEEEcC
Confidence 443 2246899999864
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.032 Score=55.34 Aligned_cols=113 Identities=15% Similarity=0.154 Sum_probs=63.0
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCCC-Cchhhhh----------cccc--chhh-ccccCCCC--CCCccch
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-DTLPVIY----------DRGL--VGIY-HDWCESFG--TYPRSYD 610 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-~tL~vI~----------~RGL--ig~y-hdwce~f~--typrTyD 610 (689)
..|+|+++|.|.|+.+|... +-+ ||+=++-. .-|...- ..|+ |-+. .|.-+.++ ..+.++|
T Consensus 48 ~~vLDiGcG~G~~~~~la~~~p~~--~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D 125 (235)
T 3ckk_A 48 VEFADIGCGYGGLLVELSPLFPDT--LILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT 125 (235)
T ss_dssp EEEEEETCTTCHHHHHHGGGSTTS--EEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred CeEEEEccCCcHHHHHHHHHCCCC--eEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence 46999999999999999754 322 34433322 1111110 0122 1111 12222222 2367899
Q ss_pred hhccccccccc------cCCcCCccceeeeeccccccCcEEEEe-CchhhHHHHHHHHhhc
Q 044932 611 LLHADHLFSRL------KSRCRQPVSIVVEMDRILRPGGWAIVR-DKVEILDPLEGILRSL 664 (689)
Q Consensus 611 LlHa~~lfs~~------~~~c~~~~~illEmDRILRP~G~~iir-D~~~~l~~v~~i~~~l 664 (689)
+|..... ..| +.|.. ...+|-++-|+|+|||.++|. |..++...+...+...
T Consensus 126 ~v~~~~~-dp~~k~~h~krr~~-~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~ 184 (235)
T 3ckk_A 126 KMFFLFP-DPHFKRTKHKWRII-SPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEH 184 (235)
T ss_dssp EEEEESC-C-----------CC-CHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTS
T ss_pred EEEEeCC-Cchhhhhhhhhhhh-hHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHC
Confidence 8864321 112 22333 256888999999999999886 7777777666666443
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=93.88 E-value=0.014 Score=57.54 Aligned_cols=87 Identities=20% Similarity=0.254 Sum_probs=53.0
Q ss_pred eEEeecCCcchhHHHHhccC--CceEEEeccCCC-CCchhhhhcccc-chhh-ccccCCCCCCCccchhhcccccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ--KIWVMNVVPVHA-PDTLPVIYDRGL-VGIY-HDWCESFGTYPRSYDLLHADHLFSRLK 622 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~--~vWVMNvvp~~~-~~tL~vI~~RGL-ig~y-hdwce~f~typrTyDLlHa~~lfs~~~ 622 (689)
..|+|+++|.|.++..|... .. +|+-++- +.-+...-.++- +-+. .|. +.++.-+.+||+|.+.+.
T Consensus 87 ~~vLdiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~----- 157 (269)
T 1p91_A 87 TAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRYPQVTFCVASS-HRLPFSDTSMDAIIRIYA----- 157 (269)
T ss_dssp CEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHCTTSEEEECCT-TSCSBCTTCEEEEEEESC-----
T ss_pred CEEEEECCCCCHHHHHHHHhCCCC---eEEEEeCCHHHHHHHHHhCCCcEEEEcch-hhCCCCCCceeEEEEeCC-----
Confidence 46999999999999988765 22 2333332 233333333320 1111 122 234444578999987533
Q ss_pred CCcCCccceeeeeccccccCcEEEEeC
Q 044932 623 SRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 623 ~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
...|-|+-|+|||||.+++-+
T Consensus 158 ------~~~l~~~~~~L~pgG~l~~~~ 178 (269)
T 1p91_A 158 ------PCKAEELARVVKPGGWVITAT 178 (269)
T ss_dssp ------CCCHHHHHHHEEEEEEEEEEE
T ss_pred ------hhhHHHHHHhcCCCcEEEEEE
Confidence 125789999999999998874
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.85 E-value=0.0091 Score=62.12 Aligned_cols=129 Identities=15% Similarity=0.127 Sum_probs=71.7
Q ss_pred EEeecCCcchhHHHHhccC-CceEEEeccCCCC-Cchhh----hhccccchhhccccCCCCCCCccchhhcccccccccc
Q 044932 549 NVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-DTLPV----IYDRGLVGIYHDWCESFGTYPRSYDLLHADHLFSRLK 622 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-~tL~v----I~~RGLig~yhdwce~f~typrTyDLlHa~~lfs~~~ 622 (689)
.|+|+++|.|.++.+|... +-+ +|+-++.. .-+.. +...|+-..+ -+...++..+.+||+|-++..|....
T Consensus 199 ~VLDlGcG~G~~~~~la~~~~~~--~v~~vD~s~~~l~~a~~~~~~~~~~~~~-~~~d~~~~~~~~fD~Iv~~~~~~~g~ 275 (343)
T 2pjd_A 199 KVLDVGCGAGVLSVAFARHSPKI--RLTLCDVSAPAVEASRATLAANGVEGEV-FASNVFSEVKGRFDMIISNPPFHDGM 275 (343)
T ss_dssp BCCBTTCTTSHHHHHHHHHCTTC--BCEEEESBHHHHHHHHHHHHHTTCCCEE-EECSTTTTCCSCEEEEEECCCCCSSS
T ss_pred eEEEecCccCHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHhCCCCEE-EEccccccccCCeeEEEECCCcccCc
Confidence 6999999999999888653 211 12222221 11211 1122332212 13344444578999999998886321
Q ss_pred --CCcCCccceeeeeccccccCcEEEEeCch--hhHHHHHHHHhhcceeEEEeecCCCceEEEEEec
Q 044932 623 --SRCRQPVSIVVEMDRILRPGGWAIVRDKV--EILDPLEGILRSLHWEIRMTYAQDKEGILCAQKT 685 (689)
Q Consensus 623 --~~c~~~~~illEmDRILRP~G~~iirD~~--~~l~~v~~i~~~lrW~~~~~~~~~~E~iL~~~K~ 685 (689)
..-. ...+|-++-|+|+|||.++|-... ..-..++.+.. ++.......+=+|+.++|.
T Consensus 276 ~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~f~----~~~~~~~~~gf~v~~~~k~ 337 (343)
T 2pjd_A 276 QTSLDA-AQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETFG----FHEVIAQTGRFKVYRAIMT 337 (343)
T ss_dssp HHHHHH-HHHHHHHHGGGEEEEEEEEEEEETTSSHHHHHHHHHS----CCEEEEECSSEEEEEEEC-
T ss_pred cCCHHH-HHHHHHHHHHhCCCCcEEEEEEcCCCCcHHHHHHhcC----ceEEEeeCCCEEEEEEEeC
Confidence 1112 256799999999999999986432 22233333333 2233323344567777663
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=93.82 E-value=0.0075 Score=60.02 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=43.2
Q ss_pred Cccchhhcccccccccc-CCcCCccceeeeeccccccCcEEEEeCchh----------------hHHHHHHHHhhcceeE
Q 044932 606 PRSYDLLHADHLFSRLK-SRCRQPVSIVVEMDRILRPGGWAIVRDKVE----------------ILDPLEGILRSLHWEI 668 (689)
Q Consensus 606 prTyDLlHa~~lfs~~~-~~c~~~~~illEmDRILRP~G~~iirD~~~----------------~l~~v~~i~~~lrW~~ 668 (689)
..+||+|-+..+|.... +.-+ +..+|-+|-|+|+|||.+++.+... -.+.+..++..-...+
T Consensus 154 ~~~fD~V~~~~~l~~i~~~~~~-~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i 232 (263)
T 2a14_A 154 LPLADCVLTLLAMECACCSLDA-YRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDI 232 (263)
T ss_dssp CCCEEEEEEESCHHHHCSSHHH-HHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred cCCCCEeeehHHHHHhcCCHHH-HHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeeccccCHHHHHHHHHHCCCEE
Confidence 35899999999987642 2233 2457889999999999999995211 2456666665555544
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=0.009 Score=58.53 Aligned_cols=113 Identities=15% Similarity=0.132 Sum_probs=64.0
Q ss_pred eEEeecCCcchhHHHHhccC--CceEEEeccCCCC-Cchh----hhhccccchh---hccccCCCC--CCCccchhhccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ--KIWVMNVVPVHAP-DTLP----VIYDRGLVGI---YHDWCESFG--TYPRSYDLLHAD 615 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~--~vWVMNvvp~~~~-~tL~----vI~~RGLig~---yhdwce~f~--typrTyDLlHa~ 615 (689)
..|+|+++|.|.++.+|... .. +|+-++-. .-+. -+-..|+-.+ -.|-.+-++ .-+.++|+|++.
T Consensus 36 ~~vLDiGcG~G~~~~~lA~~~p~~---~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 36 PVTLEIGFGMGASLVAMAKDRPEQ---DFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CEEEEESCTTCHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CeEEEEeeeChHHHHHHHHHCCCC---eEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 46999999999999998743 22 24433322 2222 1223344221 122222222 236799998865
Q ss_pred cccccccCCcC----CccceeeeeccccccCcEEEEe-CchhhHHHHHHHHhh
Q 044932 616 HLFSRLKSRCR----QPVSIVVEMDRILRPGGWAIVR-DKVEILDPLEGILRS 663 (689)
Q Consensus 616 ~lfs~~~~~c~----~~~~illEmDRILRP~G~~iir-D~~~~l~~v~~i~~~ 663 (689)
....-.+.+.. +...+|-++-|+|+|||.++|. |...+...+..++..
T Consensus 113 ~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~ 165 (218)
T 3dxy_A 113 FPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSS 165 (218)
T ss_dssp SCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHT
T ss_pred CCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 32221111111 0124788999999999999887 556666666666543
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.017 Score=58.31 Aligned_cols=109 Identities=15% Similarity=0.054 Sum_probs=61.7
Q ss_pred eEEeecCCcchhHHHHhccC----CceEEEeccCCCCCchhh----hhcccc--chhhccccCCCCCCCccchhhccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ----KIWVMNVVPVHAPDTLPV----IYDRGL--VGIYHDWCESFGTYPRSYDLLHADHL 617 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~----~vWVMNvvp~~~~~tL~v----I~~RGL--ig~yhdwce~f~typrTyDLlHa~~l 617 (689)
..|+|+.+|.|+|+..|... .|+-+-..| ..+.. +-..|+ +-+++.=.+.++ .+.+||+|-++..
T Consensus 121 ~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~----~av~~a~~n~~~n~l~~~~~~~~d~~~~~-~~~~~D~Vi~d~p 195 (272)
T 3a27_A 121 EVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNP----TAYHYLCENIKLNKLNNVIPILADNRDVE-LKDVADRVIMGYV 195 (272)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCCSEEEEEECCH----HHHHHHHHHHHHTTCSSEEEEESCGGGCC-CTTCEEEEEECCC
T ss_pred CEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCH----HHHHHHHHHHHHcCCCCEEEEECChHHcC-ccCCceEEEECCc
Confidence 47999999999999888653 233222222 11111 111122 112221122232 2678999876654
Q ss_pred cccccCCcCCccceeeeeccccccCcEEEEeCchh------hHHH-HHHHHhhcceeEE
Q 044932 618 FSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVE------ILDP-LEGILRSLHWEIR 669 (689)
Q Consensus 618 fs~~~~~c~~~~~illEmDRILRP~G~~iirD~~~------~l~~-v~~i~~~lrW~~~ 669 (689)
. . ...+|.++=|+|+|||.+++.+... .+.+ ++.+...+.+++.
T Consensus 196 ~-------~-~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (272)
T 3a27_A 196 H-------K-THKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKLI 246 (272)
T ss_dssp S-------S-GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEEE
T ss_pred c-------c-HHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCCeeE
Confidence 3 3 2557888889999999999986532 4444 4444454555544
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=93.64 E-value=0.02 Score=56.37 Aligned_cols=97 Identities=13% Similarity=0.043 Sum_probs=50.9
Q ss_pred eEEeecCCcchhHHHHhcc-CCceEEEeccCCCC-Cch-hh-------hhccccchh--hccccCCCCC-CCccchhhcc
Q 044932 548 RNVMDMKSIYGGFAAALAQ-QKIWVMNVVPVHAP-DTL-PV-------IYDRGLVGI--YHDWCESFGT-YPRSYDLLHA 614 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~-~~vWVMNvvp~~~~-~tL-~v-------I~~RGLig~--yhdwce~f~t-yprTyDLlHa 614 (689)
..|+|+++|.|.|+.+|.. .+-. +|+=++.. ..+ .+ +..+|+-.+ .+.=.+.++. +.-.+|.++.
T Consensus 26 ~~vLDiGCG~G~~~~~la~~~~~~--~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~ 103 (225)
T 3p2e_A 26 RVHIDLGTGDGRNIYKLAINDQNT--FYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISI 103 (225)
T ss_dssp EEEEEETCTTSHHHHHHHHTCTTE--EEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEE
T ss_pred CEEEEEeccCcHHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEE
Confidence 5699999999999999973 2322 34444432 222 11 123454222 1211233321 1134444444
Q ss_pred ccccccc--cCCcCCccceeeeeccccccCcEEEE
Q 044932 615 DHLFSRL--KSRCRQPVSIVVEMDRILRPGGWAIV 647 (689)
Q Consensus 615 ~~lfs~~--~~~c~~~~~illEmDRILRP~G~~ii 647 (689)
...+... ..+-. ...+|-||-|+|||||.++|
T Consensus 104 ~~~~~~~~~~~~~~-~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 104 LFPWGTLLEYVIKP-NRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp ESCCHHHHHHHHTT-CHHHHHHHHTTEEEEEEEEE
T ss_pred eCCCcHHhhhhhcc-hHHHHHHHHHhcCCCcEEEE
Confidence 3221110 00112 13578899999999999999
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=93.63 E-value=0.0075 Score=57.98 Aligned_cols=103 Identities=17% Similarity=0.313 Sum_probs=54.3
Q ss_pred cccCCCCCCeeEEeecCCcchhHHHHhccC-----CceEEEeccCCCCCchhhhhcc-ccchhhccccC--CCCCCCccc
Q 044932 538 TGLGIDWSKIRNVMDMKSIYGGFAAALAQQ-----KIWVMNVVPVHAPDTLPVIYDR-GLVGIYHDWCE--SFGTYPRSY 609 (689)
Q Consensus 538 ~~l~~~~~~iRNvmDMna~~GgFAAal~~~-----~vWVMNvvp~~~~~tL~vI~~R-GLig~yhdwce--~f~typrTy 609 (689)
..+.+..+ ..|+|+++|.|.++..|... .|..+-+.|.........+-.+ ++.-+..|..+ .+...+.+|
T Consensus 67 ~~~~~~~~--~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 144 (227)
T 1g8a_A 67 KNFPIKPG--KSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKV 144 (227)
T ss_dssp CCCCCCTT--CEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCE
T ss_pred HhcCCCCC--CEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCc
Confidence 33344444 37999999999999888643 2333322221000000000011 11112223333 112345689
Q ss_pred hhhccccccccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 610 DLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 610 DLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
|+|-++.. ..-. ...+|-++-|+|+|||++++-
T Consensus 145 D~v~~~~~-----~~~~-~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 145 DVIFEDVA-----QPTQ-AKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp EEEEECCC-----STTH-HHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEECCC-----CHhH-HHHHHHHHHHhcCCCCEEEEE
Confidence 99986543 1111 123488999999999999884
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=93.61 E-value=0.005 Score=64.48 Aligned_cols=142 Identities=11% Similarity=0.024 Sum_probs=75.2
Q ss_pred HHHHHHHhhhcccCCCCCCeeEEeecCCcchhHHHHhcc--CCceEEEeccCCC-CCchhh----hhccccchhhccccC
Q 044932 528 WKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQ--QKIWVMNVVPVHA-PDTLPV----IYDRGLVGIYHDWCE 600 (689)
Q Consensus 528 W~~~v~~~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~--~~vWVMNvvp~~~-~~tL~v----I~~RGLig~yhdwce 600 (689)
|...+..-+ ..+++..+ ..|+|+++|.|+++|.+.. ... .|+-++- +.-|.. +...|+ .-..-.|.
T Consensus 107 ~~~l~~~E~-~la~l~~g--~rVLDIGcG~G~~ta~~lA~~~ga---~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~g 179 (298)
T 3fpf_A 107 YLELLKNEA-ALGRFRRG--ERAVFIGGGPLPLTGILLSHVYGM---RVNVVEIEPDIAELSRKVIEGLGV-DGVNVITG 179 (298)
T ss_dssp HHHHHHHHH-HHTTCCTT--CEEEEECCCSSCHHHHHHHHTTCC---EEEEEESSHHHHHHHHHHHHHHTC-CSEEEEES
T ss_pred HHHHHHHHH-HHcCCCCc--CEEEEECCCccHHHHHHHHHccCC---EEEEEECCHHHHHHHHHHHHhcCC-CCeEEEEC
Confidence 555554322 13455544 5799999999999876532 222 2333332 122221 222354 21111121
Q ss_pred CCCCC-CccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeCchhhHH----HH-HHHHhhcceeEEEeec-
Q 044932 601 SFGTY-PRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVEILD----PL-EGILRSLHWEIRMTYA- 673 (689)
Q Consensus 601 ~f~ty-prTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~~~l~----~v-~~i~~~lrW~~~~~~~- 673 (689)
-+..+ +.+||+|...++. -+ ...++-||=|+|||||.+++++...+-. .+ ..+.. .|+.....+
T Consensus 180 Da~~l~d~~FDvV~~~a~~------~d-~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~~~~~--gf~~~~~~~p 250 (298)
T 3fpf_A 180 DETVIDGLEFDVLMVAALA------EP-KRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDIT--GFRRAGVVLP 250 (298)
T ss_dssp CGGGGGGCCCSEEEECTTC------SC-HHHHHHHHHHHCCTTCEEEEEECCGGGGGSSCCCCTGGGT--TEEEEEEECC
T ss_pred chhhCCCCCcCEEEECCCc------cC-HHHHHHHHHHHcCCCcEEEEEcCcchhhhccccCChhhhh--hhhheeEECC
Confidence 11112 5899999865541 22 3568999999999999999997432110 00 11233 455544322
Q ss_pred -C-CCceEEEEEec
Q 044932 674 -Q-DKEGILCAQKT 685 (689)
Q Consensus 674 -~-~~E~iL~~~K~ 685 (689)
. ....|.+++|.
T Consensus 251 ~~~v~N~vv~a~k~ 264 (298)
T 3fpf_A 251 SGKVNNTSVLVFKC 264 (298)
T ss_dssp CTTCCCEEEEEEEC
T ss_pred CCCcCcEEEEEEcc
Confidence 2 24568888874
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=93.60 E-value=0.007 Score=58.85 Aligned_cols=98 Identities=15% Similarity=0.224 Sum_probs=54.2
Q ss_pred cCCCCCCeeEEeecCCcchhHHHHhccC--CceEEEeccCCCC-Cc----hhhhhcc-ccchhhccccCC--CCCCCccc
Q 044932 540 LGIDWSKIRNVMDMKSIYGGFAAALAQQ--KIWVMNVVPVHAP-DT----LPVIYDR-GLVGIYHDWCES--FGTYPRSY 609 (689)
Q Consensus 540 l~~~~~~iRNvmDMna~~GgFAAal~~~--~vWVMNvvp~~~~-~t----L~vI~~R-GLig~yhdwce~--f~typrTy 609 (689)
+.+..+ ..|||+++|.|.++..|... .-- |+-++-. .- +...-.+ ++.-+..|..+. +..++.+|
T Consensus 53 ~~~~~g--~~VLDlGcGtG~~~~~la~~~~~~~---V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~f 127 (210)
T 1nt2_A 53 LKLRGD--ERVLYLGAASGTTVSHLADIVDEGI---IYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKV 127 (210)
T ss_dssp CCCCSS--CEEEEETCTTSHHHHHHHHHTTTSE---EEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCE
T ss_pred cCCCCC--CEEEEECCcCCHHHHHHHHHcCCCE---EEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccce
Confidence 344444 36999999999998877642 111 3333322 11 1111111 122222343332 12346899
Q ss_pred hhhccccccccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 610 DLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 610 DLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
|+|-++. ... .....+|-|+-|+|+|||.++|-
T Consensus 128 D~V~~~~-----~~~-~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 128 DLIYQDI-----AQK-NQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp EEEEECC-----CST-THHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEEec-----cCh-hHHHHHHHHHHHHhCCCCEEEEE
Confidence 9998762 111 11123478999999999999986
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=93.45 E-value=0.12 Score=53.85 Aligned_cols=66 Identities=14% Similarity=0.186 Sum_probs=42.1
Q ss_pred CCCCCcceEEecc--ccc-----------cccccHHHHHHHHHhccCCCcEEEEEcCCCc--------hhHHHHHHHHHH
Q 044932 368 FPSGVFDAIHCDG--CSI-----------TWHAHGGKLLLEMNRILRPSGYFILSTKHDS--------IEEEEALTTLTA 426 (689)
Q Consensus 368 FpD~SFDlVhcs~--cli-----------~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~--------le~~~~ie~La~ 426 (689)
+++++||+|++.- ... .|.......|.++.|+|+|||.+++...... ......+..+++
T Consensus 29 l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~~~~~~~~~~~i~~~~~ 108 (323)
T 1boo_A 29 FPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVPARSIYNFRVLIRMID 108 (323)
T ss_dssp SCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTEEEECCHHHHHHHHHHH
T ss_pred CCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCCcccccchHHHHHHHHH
Confidence 4578999998751 110 1222356789999999999999999754321 112233445667
Q ss_pred hcceeEE
Q 044932 427 SICWNIL 433 (689)
Q Consensus 427 ~l~W~~v 433 (689)
..+|...
T Consensus 109 ~~Gf~~~ 115 (323)
T 1boo_A 109 EVGFFLA 115 (323)
T ss_dssp TTCCEEE
T ss_pred hCCCEEE
Confidence 7888654
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=93.40 E-value=0.011 Score=61.44 Aligned_cols=92 Identities=15% Similarity=0.246 Sum_probs=60.3
Q ss_pred CeeEEeecCCcchhHHHHhccC--C--ceEEEeccCCCCCchhhhhc-cccchhhccccCCCCCCCccchhhcccccccc
Q 044932 546 KIRNVMDMKSIYGGFAAALAQQ--K--IWVMNVVPVHAPDTLPVIYD-RGLVGIYHDWCESFGTYPRSYDLLHADHLFSR 620 (689)
Q Consensus 546 ~iRNvmDMna~~GgFAAal~~~--~--vWVMNvvp~~~~~tL~vI~~-RGLig~yhdwce~f~typrTyDLlHa~~lfs~ 620 (689)
....|+|+++|.|.++.+|... . +.+.-. | ..+...-. .++-=+-+|..+ .+|. ||+|.+.++|..
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~----~~~~~a~~~~~v~~~~~d~~~---~~p~-~D~v~~~~~lh~ 258 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-P----QVVENLSGSNNLTYVGGDMFT---SIPN-ADAVLLKYILHN 258 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H----HHHTTCCCBTTEEEEECCTTT---CCCC-CSEEEEESCGGG
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-H----HHHhhcccCCCcEEEeccccC---CCCC-ccEEEeehhhcc
Confidence 4578999999999999999753 2 333332 2 11111100 122222344444 3454 999999999988
Q ss_pred ccCC-cCCccceeeeecccccc---CcEEEEeC
Q 044932 621 LKSR-CRQPVSIVVEMDRILRP---GGWAIVRD 649 (689)
Q Consensus 621 ~~~~-c~~~~~illEmDRILRP---~G~~iirD 649 (689)
+.+. |. .+|-++=|+|+| ||.++|-|
T Consensus 259 ~~d~~~~---~~l~~~~~~L~p~~~gG~l~i~e 288 (352)
T 1fp2_A 259 WTDKDCL---RILKKCKEAVTNDGKRGKVTIID 288 (352)
T ss_dssp SCHHHHH---HHHHHHHHHHSGGGCCCEEEEEE
T ss_pred CCHHHHH---HHHHHHHHhCCCCCCCcEEEEEE
Confidence 8653 33 589999999999 99998875
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=93.35 E-value=0.05 Score=55.25 Aligned_cols=134 Identities=16% Similarity=0.103 Sum_probs=70.9
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhcc-----cc-----------chhhc-cccCCCCCCCccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDR-----GL-----------VGIYH-DWCESFGTYPRSY 609 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~R-----GL-----------ig~yh-dwce~f~typrTy 609 (689)
++|+|+++|.|+++..|...++ .+|+-++- +.-+.+.-++ || |-+.+ |-.+-+.. +.+|
T Consensus 77 ~~VLdiG~G~G~~~~~l~~~~~--~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~f 153 (281)
T 1mjf_A 77 KRVLVIGGGDGGTVREVLQHDV--DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGF 153 (281)
T ss_dssp CEEEEEECTTSHHHHHHTTSCC--SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCE
T ss_pred CeEEEEcCCcCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCCe
Confidence 6899999999999999987653 12332222 1111111100 21 11111 11111122 6789
Q ss_pred hhhccccccccccCCcCC-ccceeeeeccccccCcEEEEeC-----chhhHHHHHHHHhhcceeEEEeec-----CCCce
Q 044932 610 DLLHADHLFSRLKSRCRQ-PVSIVVEMDRILRPGGWAIVRD-----KVEILDPLEGILRSLHWEIRMTYA-----QDKEG 678 (689)
Q Consensus 610 DLlHa~~lfs~~~~~c~~-~~~illEmDRILRP~G~~iirD-----~~~~l~~v~~i~~~lrW~~~~~~~-----~~~E~ 678 (689)
|+|-++... .+...-.+ ...++-++-|+|+|||.+++.- ..+.+..+.+.++..--.+..... .+.-.
T Consensus 154 D~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~g~~~ 232 (281)
T 1mjf_A 154 DVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVIGYASPWA 232 (281)
T ss_dssp EEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEECCTTSSSSEE
T ss_pred eEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEEEEEecCCCCceEE
Confidence 999986543 22111010 1346778899999999999972 234455555544444334443211 23456
Q ss_pred EEEEEec
Q 044932 679 ILCAQKT 685 (689)
Q Consensus 679 iL~~~K~ 685 (689)
+++|.|.
T Consensus 233 ~~~as~~ 239 (281)
T 1mjf_A 233 FLVGVKG 239 (281)
T ss_dssp EEEEEES
T ss_pred EEEeeCC
Confidence 8888886
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=93.31 E-value=0.034 Score=72.36 Aligned_cols=99 Identities=13% Similarity=0.107 Sum_probs=41.1
Q ss_pred CCeEEEECCccchhHHHhh----c-----CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCC-CCCCCCcceEEe
Q 044932 309 IRVVLEIGSADLSFVASLL----A-----KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRL-PFPSGVFDAIHC 378 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La----~-----~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~L-PFpD~SFDlVhc 378 (689)
..+||+||.|+|..+..++ . ...+..|+++.....+.-.+.. +......++.... +|...+||+|++
T Consensus 1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~---~di~~~~~d~~~~~~~~~~~ydlvia 1317 (2512)
T 2vz8_A 1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQ---LHVTQGQWDPANPAPGSLGKADLLVC 1317 (2512)
T ss_dssp EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHH---HTEEEECCCSSCCCC-----CCEEEE
T ss_pred CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhh---cccccccccccccccCCCCceeEEEE
Confidence 4589999999997654322 1 1345567776433211111111 1222222333222 456678999998
Q ss_pred ccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 379 DGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
+.++ |-..+....|..++++|||||++++...
T Consensus 1318 ~~vl-~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A 1318 NCAL-ATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp ECC---------------------CCEEEEEEC
T ss_pred cccc-cccccHHHHHHHHHHhcCCCcEEEEEec
Confidence 7544 4355777899999999999999998753
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=93.28 E-value=0.011 Score=56.14 Aligned_cols=89 Identities=19% Similarity=0.160 Sum_probs=51.6
Q ss_pred eEEeecCCcchhHHHHhccCC---ceEEEeccCCC-CCchhhhhcc----cc--chh-hccccCCCCCCCccchhhcccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQK---IWVMNVVPVHA-PDTLPVIYDR----GL--VGI-YHDWCESFGTYPRSYDLLHADH 616 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~---vWVMNvvp~~~-~~tL~vI~~R----GL--ig~-yhdwce~f~typrTyDLlHa~~ 616 (689)
..|+|+++|.|.+++.|...- . +|+-++. +..+...-++ |+ |-+ ..|..+.++ -+.+||+|.+.+
T Consensus 79 ~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~ 154 (215)
T 2yxe_A 79 MKVLEIGTGCGYHAAVTAEIVGEDG---LVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE-PLAPYDRIYTTA 154 (215)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG-GGCCEEEEEESS
T ss_pred CEEEEECCCccHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC-CCCCeeEEEECC
Confidence 479999999999998886531 1 1222222 1222222221 22 111 123322222 146899999887
Q ss_pred ccccccCCcCCccceeeeeccccccCcEEEEeCc
Q 044932 617 LFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDK 650 (689)
Q Consensus 617 lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~ 650 (689)
.+.... -++-|+|+|||.+++--.
T Consensus 155 ~~~~~~----------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 155 AGPKIP----------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp BBSSCC----------HHHHHTEEEEEEEEEEES
T ss_pred chHHHH----------HHHHHHcCCCcEEEEEEC
Confidence 775322 367799999999988743
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=93.27 E-value=0.053 Score=56.74 Aligned_cols=136 Identities=14% Similarity=0.150 Sum_probs=84.5
Q ss_pred CCCCCeeEEeecCCcchhHHHHhccC-C-ceEEEeccCCCCCchhhh---hccccch----hhccccCCCCCCCccchhh
Q 044932 542 IDWSKIRNVMDMKSIYGGFAAALAQQ-K-IWVMNVVPVHAPDTLPVI---YDRGLVG----IYHDWCESFGTYPRSYDLL 612 (689)
Q Consensus 542 ~~~~~iRNvmDMna~~GgFAAal~~~-~-vWVMNvvp~~~~~tL~vI---~~RGLig----~yhdwce~f~typrTyDLl 612 (689)
++++.++.|+|.++|.|.++.+|... | +- ++-.+-|..+... ...++.+ +-||. |...+-.+|++
T Consensus 175 ~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~---~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~---~~~~~~~~D~~ 248 (353)
T 4a6d_A 175 FDLSVFPLMCDLGGGAGALAKECMSLYPGCK---ITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDF---FKDPLPEADLY 248 (353)
T ss_dssp SCGGGCSEEEEETCTTSHHHHHHHHHCSSCE---EEEEECHHHHHHHHHHSCC--CCSEEEEESCT---TTSCCCCCSEE
T ss_pred cCcccCCeEEeeCCCCCHHHHHHHHhCCCce---eEeccCHHHHHHHHHhhhhcccCceeeecCcc---ccCCCCCceEE
Confidence 45667889999999999999999753 2 22 2222223222111 1111111 12332 32334468999
Q ss_pred ccccccccccC-CcCCccceeeeeccccccCcEEEEeCch--------------h------------hHHHHHHHHhhcc
Q 044932 613 HADHLFSRLKS-RCRQPVSIVVEMDRILRPGGWAIVRDKV--------------E------------ILDPLEGILRSLH 665 (689)
Q Consensus 613 Ha~~lfs~~~~-~c~~~~~illEmDRILRP~G~~iirD~~--------------~------------~l~~v~~i~~~lr 665 (689)
....+|-.|.+ .|. .||-++=|.|+|||.++|-|.+ + ...+.+.++..--
T Consensus 249 ~~~~vlh~~~d~~~~---~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AG 325 (353)
T 4a6d_A 249 ILARVLHDWADGKCS---HLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAG 325 (353)
T ss_dssp EEESSGGGSCHHHHH---HHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHT
T ss_pred EeeeecccCCHHHHH---HHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCC
Confidence 99999998876 454 4889999999999999887521 1 1245666776666
Q ss_pred eeE-EEeecCCCceEEEEEecc
Q 044932 666 WEI-RMTYAQDKEGILCAQKTM 686 (689)
Q Consensus 666 W~~-~~~~~~~~E~iL~~~K~~ 686 (689)
|.. ++......-.+++|+|..
T Consensus 326 f~~v~v~~~~~~~~~i~ArKgt 347 (353)
T 4a6d_A 326 FRDFQFKKTGAIYDAILARKGT 347 (353)
T ss_dssp CEEEEEECCSSSCEEEEEECCC
T ss_pred CceEEEEEcCCceEEEEEEecC
Confidence 653 444334456789999975
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=93.19 E-value=0.05 Score=57.18 Aligned_cols=96 Identities=16% Similarity=0.264 Sum_probs=60.2
Q ss_pred CCCeeEEeecCCcchhHHHHhcc--CCceEEEeccCCCCCchhhhhcc-ccchhhccccCCCCCCCccchhhcccccccc
Q 044932 544 WSKIRNVMDMKSIYGGFAAALAQ--QKIWVMNVVPVHAPDTLPVIYDR-GLVGIYHDWCESFGTYPRSYDLLHADHLFSR 620 (689)
Q Consensus 544 ~~~iRNvmDMna~~GgFAAal~~--~~vWVMNvvp~~~~~tL~vI~~R-GLig~yhdwce~f~typrTyDLlHa~~lfs~ 620 (689)
....+.|+|.++|.|.++.+|.. ..+-+.. ++-|..+...-.+ ++-=+-+|.-++ +|.. |+|.+..+|..
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~---~D~~~~~~~a~~~~~v~~~~~d~~~~---~p~~-D~v~~~~vlh~ 273 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAIN---FDLPHVIQDAPAFSGVEHLGGDMFDG---VPKG-DAIFIKWICHD 273 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEE---EECHHHHTTCCCCTTEEEEECCTTTC---CCCC-SEEEEESCGGG
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEE---EehHHHHHhhhhcCCCEEEecCCCCC---CCCC-CEEEEechhhc
Confidence 34578899999999999999975 2332211 1111111111011 111122344443 4544 99999999988
Q ss_pred ccCC-cCCccceeeeeccccccCcEEEEeC
Q 044932 621 LKSR-CRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 621 ~~~~-c~~~~~illEmDRILRP~G~~iirD 649 (689)
|.+. |. .||-++=|.|+|||.++|-|
T Consensus 274 ~~~~~~~---~~l~~~~~~L~pgG~l~i~e 300 (368)
T 3reo_A 274 WSDEHCL---KLLKNCYAALPDHGKVIVAE 300 (368)
T ss_dssp BCHHHHH---HHHHHHHHHSCTTCEEEEEE
T ss_pred CCHHHHH---HHHHHHHHHcCCCCEEEEEE
Confidence 7653 33 47889999999999999865
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=93.19 E-value=0.017 Score=57.55 Aligned_cols=94 Identities=14% Similarity=0.124 Sum_probs=54.0
Q ss_pred eeEEeecCCcchhHHHHhccC-C-ceEEEeccCCC-CCchhh----hhccccc---hhhc-cccCCCCCC------Cccc
Q 044932 547 IRNVMDMKSIYGGFAAALAQQ-K-IWVMNVVPVHA-PDTLPV----IYDRGLV---GIYH-DWCESFGTY------PRSY 609 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~-~-vWVMNvvp~~~-~~tL~v----I~~RGLi---g~yh-dwce~f~ty------prTy 609 (689)
-++|+|+++|.|.++..|... + -. .|+-++. +..+.+ +-..|+- -+.+ |..+.++.+ +.+|
T Consensus 80 ~~~VLeiG~G~G~~~~~la~~~~~~~--~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATALAIPEDG--KILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTTC--EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred cCEEEEeCCCcCHHHHHHHHhCCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 358999999999998887642 1 11 2333332 222221 2223441 1211 222322333 5789
Q ss_pred hhhccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 610 DLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 610 DLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
|+|-+++-.. . ...++-++-|+|||||.+++.+
T Consensus 158 D~V~~d~~~~------~-~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 158 DFIFVDADKD------N-YLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp SEEEECSCST------T-HHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEEcCchH------H-HHHHHHHHHHhCCCCeEEEEec
Confidence 9997764311 1 2345667789999999999975
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=93.16 E-value=0.012 Score=56.30 Aligned_cols=98 Identities=9% Similarity=0.080 Sum_probs=57.0
Q ss_pred EEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhh----cccc----chhhc-cccCCCCCC-Ccc-chhhcccc
Q 044932 549 NVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIY----DRGL----VGIYH-DWCESFGTY-PRS-YDLLHADH 616 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~----~RGL----ig~yh-dwce~f~ty-prT-yDLlHa~~ 616 (689)
.|+|+.+|.|+|+.++..... -.|+-++.. ..+...- ..|+ |-+++ |..+.++.. +.+ ||+|-++.
T Consensus 56 ~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 133 (201)
T 2ift_A 56 ECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP 133 (201)
T ss_dssp EEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred eEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEECC
Confidence 699999999999887554432 134444432 2232221 1233 11121 222222222 568 99998887
Q ss_pred ccccccCCcCCccceeeee--ccccccCcEEEEeCchhh
Q 044932 617 LFSRLKSRCRQPVSIVVEM--DRILRPGGWAIVRDKVEI 653 (689)
Q Consensus 617 lfs~~~~~c~~~~~illEm--DRILRP~G~~iirD~~~~ 653 (689)
.|. .-. ...++-++ -|+|+|||.+++......
T Consensus 134 ~~~----~~~-~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 134 PFH----FNL-AEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp CSS----SCH-HHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred CCC----Ccc-HHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 764 112 24556666 689999999999866554
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=93.12 E-value=0.014 Score=63.97 Aligned_cols=111 Identities=12% Similarity=0.157 Sum_probs=67.5
Q ss_pred eeEEeecCCc------chhHHHHhccC---CceEEEeccCCC-CCchhhhhccccchhhccccCCCCCC------Cccch
Q 044932 547 IRNVMDMKSI------YGGFAAALAQQ---KIWVMNVVPVHA-PDTLPVIYDRGLVGIYHDWCESFGTY------PRSYD 610 (689)
Q Consensus 547 iRNvmDMna~------~GgFAAal~~~---~vWVMNvvp~~~-~~tL~vI~~RGLig~yhdwce~f~ty------prTyD 610 (689)
-.+|||+++| .||.+..|... .. .|+=++- +.. ++...=|=+++-=++.+++- +.+||
T Consensus 217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a---~V~GVDiSp~m---~~~~~rI~fv~GDa~dlpf~~~l~~~d~sFD 290 (419)
T 3sso_A 217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRG---QIYGLDIMDKS---HVDELRIRTIQGDQNDAEFLDRIARRYGPFD 290 (419)
T ss_dssp CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTC---EEEEEESSCCG---GGCBTTEEEEECCTTCHHHHHHHHHHHCCEE
T ss_pred CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCC---EEEEEECCHHH---hhcCCCcEEEEecccccchhhhhhcccCCcc
Confidence 4689999999 78877777542 22 2333332 121 11111111111112222222 47899
Q ss_pred hhccccccccccCCcCCccceeeeeccccccCcEEEEeCc------------------hhhHHHHHHHHhhcceeE
Q 044932 611 LLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDK------------------VEILDPLEGILRSLHWEI 668 (689)
Q Consensus 611 LlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~------------------~~~l~~v~~i~~~lrW~~ 668 (689)
+|.+++.. +. .. ....|-||=|+|||||+++|.|- ..++..++.++..++|..
T Consensus 291 lVisdgsH--~~--~d-~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~tii~~lk~l~D~l~~~~ 361 (419)
T 3sso_A 291 IVIDDGSH--IN--AH-VRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLGLLKSLIDAIQHQE 361 (419)
T ss_dssp EEEECSCC--CH--HH-HHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTSHHHHHHHHHHHHTGGG
T ss_pred EEEECCcc--cc--hh-HHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccCCcchhHHHHHHHHHHHHhcccc
Confidence 99987642 21 23 24578899999999999999752 348999999999998763
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=93.11 E-value=0.053 Score=55.60 Aligned_cols=136 Identities=10% Similarity=0.056 Sum_probs=70.3
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhhhhc------ccc----chhh-ccccCCCCCCCccchhhcc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPVIYD------RGL----VGIY-HDWCESFGTYPRSYDLLHA 614 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~vI~~------RGL----ig~y-hdwce~f~typrTyDLlHa 614 (689)
++|+|+++|.|+++.+|... ++. +|+-++- +.-+.+.-+ .|+ +-+. .|..+.+...+.+||+|-+
T Consensus 92 ~~VLdiG~G~G~~~~~l~~~~~~~--~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 92 KKVLIIGGGDGGTLREVLKHDSVE--KAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp CEEEEEECTTCHHHHHHTTSTTCS--EEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CEEEEEcCCcCHHHHHHHhcCCCC--EEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 68999999999999999876 432 2322222 111211111 111 1111 1222222334688999987
Q ss_pred cccccc-ccCCcC-CccceeeeeccccccCcEEEEeCc-----hhhHHHHHHHHhhcceeEEEee------cCCCceEEE
Q 044932 615 DHLFSR-LKSRCR-QPVSIVVEMDRILRPGGWAIVRDK-----VEILDPLEGILRSLHWEIRMTY------AQDKEGILC 681 (689)
Q Consensus 615 ~~lfs~-~~~~c~-~~~~illEmDRILRP~G~~iirD~-----~~~l~~v~~i~~~lrW~~~~~~------~~~~E~iL~ 681 (689)
+.. .. ....-. ....++-++-|+|+|||.+++.-. .+.+..+.+.++..--.+.... ..+.-.+++
T Consensus 170 d~~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~p~g~~~f~~ 248 (296)
T 1inl_A 170 DST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTF 248 (296)
T ss_dssp EC-----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEEEEE
T ss_pred cCC-CcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceEEEEeecCccCCCceEEEE
Confidence 632 22 111000 013567788999999999999732 2334444443433333444332 123356888
Q ss_pred EEecc
Q 044932 682 AQKTM 686 (689)
Q Consensus 682 ~~K~~ 686 (689)
|.|++
T Consensus 249 as~~~ 253 (296)
T 1inl_A 249 ASKGI 253 (296)
T ss_dssp EESSC
T ss_pred ecCCC
Confidence 88864
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=93.07 E-value=0.021 Score=55.79 Aligned_cols=104 Identities=20% Similarity=0.235 Sum_probs=65.1
Q ss_pred eEEeecCCcchhHHHHhccC---CceEEEeccCCCC-Cchhhhh----ccccch----hhccccCCCCCCCccchhhccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ---KIWVMNVVPVHAP-DTLPVIY----DRGLVG----IYHDWCESFGTYPRSYDLLHAD 615 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~---~vWVMNvvp~~~~-~tL~vI~----~RGLig----~yhdwce~f~typrTyDLlHa~ 615 (689)
..|+|+++|.|+++.+|... ..- |+-++-. ..+...- ..|+-. +..|..+.|+ +.+||+|-++
T Consensus 95 ~~vldiG~G~G~~~~~l~~~~~~~~~---v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~D~v~~~ 169 (255)
T 3mb5_A 95 DFIVEAGVGSGALTLFLANIVGPEGR---VVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIE--EENVDHVILD 169 (255)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTSE---EEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCC--CCSEEEEEEC
T ss_pred CEEEEecCCchHHHHHHHHHhCCCeE---EEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccC--CCCcCEEEEC
Confidence 46999999999999998754 222 3333322 2232222 224322 3345665543 4579998652
Q ss_pred cccccccCCcCCccceeeeeccccccCcEEEEeC-chhhHHHHHHHHhhcc
Q 044932 616 HLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD-KVEILDPLEGILRSLH 665 (689)
Q Consensus 616 ~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD-~~~~l~~v~~i~~~lr 665 (689)
. .. ...+|-++-|+|+|||.+++-. ..+-+.++...+....
T Consensus 170 -----~---~~-~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g 211 (255)
T 3mb5_A 170 -----L---PQ-PERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFK 211 (255)
T ss_dssp -----S---SC-GGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTG
T ss_pred -----C---CC-HHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 1 12 2457889999999999999864 4556666777776655
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=93.06 E-value=0.024 Score=53.99 Aligned_cols=119 Identities=18% Similarity=0.149 Sum_probs=65.7
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCCC-Cchhhh--------hcccc--chhhccccCCCCCCCccchhhccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-DTLPVI--------YDRGL--VGIYHDWCESFGTYPRSYDLLHAD 615 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-~tL~vI--------~~RGL--ig~yhdwce~f~typrTyDLlHa~ 615 (689)
..|+|+++|.|.++..|... |-. +|+-++-. .-|..+ ..+|+ |-+.+.-.+.++..+.+ |.+...
T Consensus 29 ~~vLDiGcG~G~~~~~la~~~p~~--~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~~ 105 (218)
T 3mq2_A 29 DVVLDVGTGDGKHPYKVARQNPSR--LVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHVL 105 (218)
T ss_dssp EEEEEESCTTCHHHHHHHHHCTTE--EEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEEE
T ss_pred CEEEEecCCCCHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEEE
Confidence 46999999999999999764 111 24444432 333322 13443 22222223345544445 666521
Q ss_pred ccccccc--CCcCCccceeeeeccccccCcEEEEeC------------------chh-hHHHHHHHHhhcceeEEE
Q 044932 616 HLFSRLK--SRCRQPVSIVVEMDRILRPGGWAIVRD------------------KVE-ILDPLEGILRSLHWEIRM 670 (689)
Q Consensus 616 ~lfs~~~--~~c~~~~~illEmDRILRP~G~~iirD------------------~~~-~l~~v~~i~~~lrW~~~~ 670 (689)
.-+.... ..-+ ...+|-+|-|+|+|||.++|.- ... +...++.++..-.|.+.-
T Consensus 106 ~~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~ 180 (218)
T 3mq2_A 106 MPWGSLLRGVLGS-SPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLAD 180 (218)
T ss_dssp SCCHHHHHHHHTS-SSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEE
T ss_pred ccchhhhhhhhcc-HHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCcee
Confidence 1111100 0011 1457889999999999999952 112 234477788888887643
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=93.04 E-value=0.23 Score=53.69 Aligned_cols=113 Identities=13% Similarity=0.017 Sum_probs=65.4
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCC---------C--
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGF---------P-- 355 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL---------~-- 355 (689)
..|.+.|... +.+. . +.++||=||-|.|..+..++.. .|+.++|+| ..++.|++.-. +
T Consensus 190 ~~Y~e~l~h~-~l~~-~-~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp-----~VVe~ar~yfp~~~~~~~d~pr~ 261 (381)
T 3c6k_A 190 LAYTRAIMGS-GKED-Y-TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQ-----MVIDGCKKYMRKTCGDVLDNLKG 261 (381)
T ss_dssp HHHHHHHTTT-TCCC-C-TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCH-----HHHHHHHHHCCC----CCSSSEE
T ss_pred HHHHHHHHHH-Hhhc-C-CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCH-----HHHHHHHhhchhhhhhhhccccc
Confidence 3566655432 2222 2 4689999999999998888764 377788876 46677665310 0
Q ss_pred --cEEecCCCCC----CCCCCCCcceEEecccc-----cccccc----HHHHHHHHHhccCCCcEEEEEc
Q 044932 356 --AVVSPLGNRR----LPFPSGVFDAIHCDGCS-----ITWHAH----GGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 356 --~i~~~~dt~~----LPFpD~SFDlVhcs~cl-----i~W~~d----~~~aL~EI~RVLRPGG~fVIsd 410 (689)
..+...|+.. .+=..+.||+|+.-... .+.... -..++..+.|+|+|||.++...
T Consensus 262 ~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 262 DCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp TTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cceeeehHHHHHHHHhhhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 1122222210 00124679999853111 010000 1356778899999999999864
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=93.03 E-value=0.066 Score=54.78 Aligned_cols=40 Identities=23% Similarity=0.124 Sum_probs=29.9
Q ss_pred CCCeEEEECCccchhHHHhh--cCCeEEEEcCCcccHHHHHHHHHHc
Q 044932 308 NIRVVLEIGSADLSFVASLL--AKEVLTLTVGLKDDLVDLAQVALER 352 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La--~~~V~gmDIsp~D~seamlq~A~eR 352 (689)
...+|||++||+|.++.+++ ++.++|+|+++ .+++.|.+|
T Consensus 235 ~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~-----~~~~~a~~r 276 (297)
T 2zig_A 235 VGDVVLDPFAGTGTTLIAAARWGRRALGVELVP-----RYAQLAKER 276 (297)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCEEEEEESCH-----HHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCH-----HHHHHHHHH
Confidence 35689999999999776655 45799999886 355555554
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.02 E-value=0.05 Score=52.47 Aligned_cols=106 Identities=13% Similarity=0.102 Sum_probs=63.7
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhcc----cc---ch-hhccccCCCCCCCccchhhcccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDR----GL---VG-IYHDWCESFGTYPRSYDLLHADHLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~R----GL---ig-~yhdwce~f~typrTyDLlHa~~lf 618 (689)
..|+|+++|.|.++.+|.... .+|+-++- +..+...-++ |+ +- +..|+.+.+ .-+.+||+|-++.
T Consensus 93 ~~vldiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~-- 166 (248)
T 2yvl_A 93 KRVLEFGTGSGALLAVLSEVA---GEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE-VPEGIFHAAFVDV-- 166 (248)
T ss_dssp CEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC-CCTTCBSEEEECS--
T ss_pred CEEEEeCCCccHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc-cCCCcccEEEECC--
Confidence 379999999999998887652 23444443 2333332222 33 11 123344432 0236799886521
Q ss_pred ccccCCcCCccceeeeeccccccCcEEEEeCc-hhhHHHHHHHHhhccee
Q 044932 619 SRLKSRCRQPVSIVVEMDRILRPGGWAIVRDK-VEILDPLEGILRSLHWE 667 (689)
Q Consensus 619 s~~~~~c~~~~~illEmDRILRP~G~~iirD~-~~~l~~v~~i~~~lrW~ 667 (689)
-. ...+|-++-|+|+|||.+++-.. .+-+..+...+... |.
T Consensus 167 ------~~-~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-f~ 208 (248)
T 2yvl_A 167 ------RE-PWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY-FG 208 (248)
T ss_dssp ------SC-GGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT-EE
T ss_pred ------cC-HHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh-CC
Confidence 12 24577888999999999988765 45666666666554 44
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=93.01 E-value=0.006 Score=57.14 Aligned_cols=99 Identities=18% Similarity=0.168 Sum_probs=58.2
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhh----hcccc--chhhc-cccCCCCCC-Cccchhhcccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVI----YDRGL--VGIYH-DWCESFGTY-PRSYDLLHADHLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI----~~RGL--ig~yh-dwce~f~ty-prTyDLlHa~~lf 618 (689)
..|+|+.+|.|.++.++...+.. .|+-++.. ..+... ...|+ +-+++ |+.+....+ +.+||+|-++..|
T Consensus 46 ~~vLDlgcG~G~~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~ 123 (189)
T 3p9n_A 46 LAVLDLYAGSGALGLEALSRGAA--SVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPY 123 (189)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCS--EEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCT
T ss_pred CEEEEeCCCcCHHHHHHHHCCCC--eEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCC
Confidence 46999999999999866655432 23333322 222221 12233 11222 222211112 6799999988766
Q ss_pred ccccCCcCCccceeeeecc--ccccCcEEEEeCch
Q 044932 619 SRLKSRCRQPVSIVVEMDR--ILRPGGWAIVRDKV 651 (689)
Q Consensus 619 s~~~~~c~~~~~illEmDR--ILRP~G~~iirD~~ 651 (689)
.... -. +..++-++-| +|+|||.+++....
T Consensus 124 ~~~~--~~-~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 124 NVDS--AD-VDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp TSCH--HH-HHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred Ccch--hh-HHHHHHHHHhcCccCCCeEEEEEecC
Confidence 5421 22 3567788888 99999999998543
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=92.96 E-value=0.1 Score=52.90 Aligned_cols=139 Identities=10% Similarity=0.122 Sum_probs=73.1
Q ss_pred CeeEEeecCCcchhHHHHhccC-CceEEEeccCCCCCchhhhhc------ccc----chhhc-cccCCCCCCCccchhhc
Q 044932 546 KIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAPDTLPVIYD------RGL----VGIYH-DWCESFGTYPRSYDLLH 613 (689)
Q Consensus 546 ~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~~tL~vI~~------RGL----ig~yh-dwce~f~typrTyDLlH 613 (689)
.-++|+|+++|.|+++..+... ++--+-+|=.+. .-+.+.-+ .++ +-+++ |--+-+...+.+||+|-
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~-~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDG-KVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCH-HHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCH-HHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 3578999999999999998876 432211222221 11111100 011 11111 11111223468999999
Q ss_pred cccccccccCCcC-CccceeeeeccccccCcEEEEeCc-----hhhHHHHHHHHhhcceeEEEee------cCCCceEEE
Q 044932 614 ADHLFSRLKSRCR-QPVSIVVEMDRILRPGGWAIVRDK-----VEILDPLEGILRSLHWEIRMTY------AQDKEGILC 681 (689)
Q Consensus 614 a~~lfs~~~~~c~-~~~~illEmDRILRP~G~~iirD~-----~~~l~~v~~i~~~lrW~~~~~~------~~~~E~iL~ 681 (689)
++... .....-. ....++-++-|+|+|||.+++.-. .+.+..+.+.++..=-.+.... ..+.-.+++
T Consensus 154 ~d~~~-~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~~~~ 232 (275)
T 1iy9_A 154 VDSTE-PVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTI 232 (275)
T ss_dssp ESCSS-CCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEEEE
T ss_pred ECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEEEEecCcccCcceEEEE
Confidence 86543 2211100 013467788999999999999832 3344555444544433444332 122346888
Q ss_pred EEecc
Q 044932 682 AQKTM 686 (689)
Q Consensus 682 ~~K~~ 686 (689)
|.|++
T Consensus 233 ask~~ 237 (275)
T 1iy9_A 233 GSKKY 237 (275)
T ss_dssp EESSC
T ss_pred eeCCC
Confidence 88864
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.93 E-value=0.047 Score=52.98 Aligned_cols=107 Identities=19% Similarity=0.164 Sum_probs=62.3
Q ss_pred eEEeecCCcchhHHHHhccC---CceEEEeccCCC-CCchhhhhcc-----cc--ch-hhccccCCCCCCCccchhhccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ---KIWVMNVVPVHA-PDTLPVIYDR-----GL--VG-IYHDWCESFGTYPRSYDLLHAD 615 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~---~vWVMNvvp~~~-~~tL~vI~~R-----GL--ig-~yhdwce~f~typrTyDLlHa~ 615 (689)
..|+|+++|.|.++.+|... .. +|+-++. +..+...-.+ |. |- +..|..+. +.-+.+||+|-++
T Consensus 98 ~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~-~~~~~~~D~v~~~ 173 (258)
T 2pwy_A 98 MRVLEAGTGSGGLTLFLARAVGEKG---LVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA-ELEEAAYDGVALD 173 (258)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC-CCCTTCEEEEEEE
T ss_pred CEEEEECCCcCHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc-CCCCCCcCEEEEC
Confidence 47999999999999988754 22 2333332 2233222222 31 11 12244433 2223689998763
Q ss_pred cccccccCCcCCccceeeeeccccccCcEEEEeCch-hhHHHHHHHHhhccee
Q 044932 616 HLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKV-EILDPLEGILRSLHWE 667 (689)
Q Consensus 616 ~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~-~~l~~v~~i~~~lrW~ 667 (689)
. -. ...+|-++-|+|+|||.+++-... +-+.++...+....|.
T Consensus 174 -----~---~~-~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~ 217 (258)
T 2pwy_A 174 -----L---ME-PWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFR 217 (258)
T ss_dssp -----S---SC-GGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEE
T ss_pred -----C---cC-HHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence 1 12 245788999999999998887643 3555555555555454
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=92.76 E-value=0.054 Score=56.89 Aligned_cols=95 Identities=16% Similarity=0.246 Sum_probs=60.2
Q ss_pred CCeeEEeecCCcchhHHHHhcc--CCceEEEeccCCCCCchhhhhcc-ccchhhccccCCCCCCCccchhhccccccccc
Q 044932 545 SKIRNVMDMKSIYGGFAAALAQ--QKIWVMNVVPVHAPDTLPVIYDR-GLVGIYHDWCESFGTYPRSYDLLHADHLFSRL 621 (689)
Q Consensus 545 ~~iRNvmDMna~~GgFAAal~~--~~vWVMNvvp~~~~~tL~vI~~R-GLig~yhdwce~f~typrTyDLlHa~~lfs~~ 621 (689)
...+.|+|+++|.|.++.+|.. ..+-+.. ++-|..+...-.+ ++-=+-+|..++ +|.. |+|.+..+|..|
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~---~D~~~~~~~a~~~~~v~~~~~D~~~~---~p~~-D~v~~~~vlh~~ 272 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVN---FDLPHVISEAPQFPGVTHVGGDMFKE---VPSG-DTILMKWILHDW 272 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEE---EECHHHHTTCCCCTTEEEEECCTTTC---CCCC-SEEEEESCGGGS
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEE---ecCHHHHHhhhhcCCeEEEeCCcCCC---CCCC-CEEEehHHhccC
Confidence 4578899999999999999975 2332221 1111111111111 122223444444 4544 999999999888
Q ss_pred cCC-cCCccceeeeeccccccCcEEEEeC
Q 044932 622 KSR-CRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 622 ~~~-c~~~~~illEmDRILRP~G~~iirD 649 (689)
.+. |. .||-++=|.|+|||.++|-|
T Consensus 273 ~d~~~~---~~L~~~~~~L~pgG~l~i~e 298 (364)
T 3p9c_A 273 SDQHCA---TLLKNCYDALPAHGKVVLVQ 298 (364)
T ss_dssp CHHHHH---HHHHHHHHHSCTTCEEEEEE
T ss_pred CHHHHH---HHHHHHHHHcCCCCEEEEEE
Confidence 643 43 47899999999999999865
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=92.62 E-value=0.0076 Score=57.85 Aligned_cols=90 Identities=16% Similarity=0.090 Sum_probs=50.9
Q ss_pred eEEeecCCcchhHHHHhccC------CceEEEeccCCC-CCchhhh----hcccc-------chh-hccccCCCC---CC
Q 044932 548 RNVMDMKSIYGGFAAALAQQ------KIWVMNVVPVHA-PDTLPVI----YDRGL-------VGI-YHDWCESFG---TY 605 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~------~vWVMNvvp~~~-~~tL~vI----~~RGL-------ig~-yhdwce~f~---ty 605 (689)
..|+|+++|.|.+++.|... +-. +|+-++. +..+... ...|+ |-+ ..|..+.+. .-
T Consensus 82 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 159 (227)
T 2pbf_A 82 SRAIDVGSGSGYLTVCMAIKMNVLENKNS--YVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE 159 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHTTTTTCTTC--EEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHhcccCCCCC--EEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCcc
Confidence 47999999999999988753 111 1222222 1222111 11231 111 112222110 12
Q ss_pred CccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 606 PRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 606 prTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
+.+||+|+++..+. .++-++-|+|+|||.+++--
T Consensus 160 ~~~fD~I~~~~~~~----------~~~~~~~~~LkpgG~lv~~~ 193 (227)
T 2pbf_A 160 LGLFDAIHVGASAS----------ELPEILVDLLAENGKLIIPI 193 (227)
T ss_dssp HCCEEEEEECSBBS----------SCCHHHHHHEEEEEEEEEEE
T ss_pred CCCcCEEEECCchH----------HHHHHHHHhcCCCcEEEEEE
Confidence 36799998877664 24567789999999998863
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=92.60 E-value=0.044 Score=55.03 Aligned_cols=138 Identities=15% Similarity=0.108 Sum_probs=69.1
Q ss_pred cCCCCCCeeEEeecCCcchhHHHHhccC-----CceEEEeccCCCCCchhhhhcc-ccchhhccccCCC--CCCCccchh
Q 044932 540 LGIDWSKIRNVMDMKSIYGGFAAALAQQ-----KIWVMNVVPVHAPDTLPVIYDR-GLVGIYHDWCESF--GTYPRSYDL 611 (689)
Q Consensus 540 l~~~~~~iRNvmDMna~~GgFAAal~~~-----~vWVMNvvp~~~~~tL~vI~~R-GLig~yhdwce~f--~typrTyDL 611 (689)
+.++++ -.|||++||.|+|++.|.+. .|.-+-+-|.-...-+.....| .+..+..|-..+. ...+.+||+
T Consensus 72 ~~l~~g--~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~ 149 (232)
T 3id6_C 72 NPIRKG--TKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDV 149 (232)
T ss_dssp CSCCTT--CEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEE
T ss_pred cCCCCC--CEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEE
Confidence 446665 46999999999999887642 2332222110000001111122 2333334433321 123467899
Q ss_pred hccccccccccCCcCCccceee-eeccccccCcEEEEe----------CchhhHHHHHHHHh--hcceeEEEee-c-CCC
Q 044932 612 LHADHLFSRLKSRCRQPVSIVV-EMDRILRPGGWAIVR----------DKVEILDPLEGILR--SLHWEIRMTY-A-QDK 676 (689)
Q Consensus 612 lHa~~lfs~~~~~c~~~~~ill-EmDRILRP~G~~iir----------D~~~~l~~v~~i~~--~lrW~~~~~~-~-~~~ 676 (689)
|.++..+ ... ..+|+ .+.|+|+|||.+++- +..++...+...+. +++..-.+.- . +..
T Consensus 150 I~~d~a~------~~~-~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~p~~~~ 222 (232)
T 3id6_C 150 LYVDIAQ------PDQ-TDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDKD 222 (232)
T ss_dssp EEECCCC------TTH-HHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEECTTTCSS
T ss_pred EEecCCC------hhH-HHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEeccCCCcCc
Confidence 8776443 232 34454 456699999999975 11123333334443 3444333321 1 224
Q ss_pred ceEEEEEecc
Q 044932 677 EGILCAQKTM 686 (689)
Q Consensus 677 E~iL~~~K~~ 686 (689)
.-+++++|.+
T Consensus 223 h~~v~~~~~~ 232 (232)
T 3id6_C 223 HAIVLSKYKG 232 (232)
T ss_dssp CEEEEEEEC-
T ss_pred eEEEEEEeCC
Confidence 5688888763
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=92.29 E-value=0.096 Score=52.33 Aligned_cols=108 Identities=16% Similarity=0.151 Sum_probs=64.0
Q ss_pred eEEeecCCcchhHHHHhccC--CceEEEeccCCC-CCchhhhhcc-----cc--ch-hhccccCCCCCCCccchhhcccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ--KIWVMNVVPVHA-PDTLPVIYDR-----GL--VG-IYHDWCESFGTYPRSYDLLHADH 616 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~--~vWVMNvvp~~~-~~tL~vI~~R-----GL--ig-~yhdwce~f~typrTyDLlHa~~ 616 (689)
..|+|+++|.|+++..|... +-. +|+-++. +..+...-++ |+ |- +..|..+.|+ +.+||+|-++
T Consensus 112 ~~VLD~G~G~G~~~~~la~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~--~~~fD~Vi~~- 186 (275)
T 1yb2_A 112 MDILEVGVGSGNMSSYILYALNGKG--TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS--DQMYDAVIAD- 186 (275)
T ss_dssp CEEEEECCTTSHHHHHHHHHHTTSS--EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC--SCCEEEEEEC-
T ss_pred CEEEEecCCCCHHHHHHHHHcCCCC--EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCc--CCCccEEEEc-
Confidence 47999999999999988754 211 2333332 2233222222 42 11 1234444332 3679998762
Q ss_pred ccccccCCcCCccceeeeeccccccCcEEEEeCchh-hHHHHHHHHhhcceeE
Q 044932 617 LFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVE-ILDPLEGILRSLHWEI 668 (689)
Q Consensus 617 lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~~-~l~~v~~i~~~lrW~~ 668 (689)
.. . ...+|-++-|+|+|||.+++-.... -+..+...+....|..
T Consensus 187 ----~~---~-~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~ 231 (275)
T 1yb2_A 187 ----IP---D-PWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHH 231 (275)
T ss_dssp ----CS---C-GGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEE
T ss_pred ----Cc---C-HHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeE
Confidence 11 2 2457888999999999998876443 5566666666555553
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=92.28 E-value=0.012 Score=56.90 Aligned_cols=87 Identities=16% Similarity=0.152 Sum_probs=50.4
Q ss_pred eEEeecCCcchhHHHHhccC----------CceEEEeccCCCCCchhhhh----cccc-------ch-hhccccCCCCCC
Q 044932 548 RNVMDMKSIYGGFAAALAQQ----------KIWVMNVVPVHAPDTLPVIY----DRGL-------VG-IYHDWCESFGTY 605 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~----------~vWVMNvvp~~~~~tL~vI~----~RGL-------ig-~yhdwce~f~ty 605 (689)
..|+|+++|.|.+++.|... .|...-+-| .-+...- ..|+ |- +..|..+.++.
T Consensus 86 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~----~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~- 160 (227)
T 1r18_A 86 ARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQA----ELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP- 160 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCH----HHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG-
T ss_pred CEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCH----HHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc-
Confidence 37999999999999988652 233222111 1221111 1110 11 12233333221
Q ss_pred CccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 606 PRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 606 prTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
..+||+|++...+. .++-++-|+|+|||.+++--
T Consensus 161 ~~~fD~I~~~~~~~----------~~~~~~~~~LkpgG~lvi~~ 194 (227)
T 1r18_A 161 NAPYNAIHVGAAAP----------DTPTELINQLASGGRLIVPV 194 (227)
T ss_dssp GCSEEEEEECSCBS----------SCCHHHHHTEEEEEEEEEEE
T ss_pred CCCccEEEECCchH----------HHHHHHHHHhcCCCEEEEEE
Confidence 26899999877653 24467789999999999863
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=92.19 E-value=0.011 Score=54.28 Aligned_cols=97 Identities=16% Similarity=0.190 Sum_probs=55.1
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhh----hhcccc---chhh-ccccCCCCCC---Cccchhhccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPV----IYDRGL---VGIY-HDWCESFGTY---PRSYDLLHAD 615 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~v----I~~RGL---ig~y-hdwce~f~ty---prTyDLlHa~ 615 (689)
..|+|+++|.|+|+.++...+.. +|+-++.. ..+.. +-..|+ +-++ .|+.+.++.. +.+||+|-++
T Consensus 46 ~~vLD~GcG~G~~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~ 123 (187)
T 2fhp_A 46 GMALDLYSGSGGLAIEAVSRGMD--KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD 123 (187)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEeCCccCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEEC
Confidence 47999999999998877655422 23333321 22211 112232 2222 2333322211 5789999988
Q ss_pred cccccccCCcCCccceeeee--ccccccCcEEEEeCch
Q 044932 616 HLFSRLKSRCRQPVSIVVEM--DRILRPGGWAIVRDKV 651 (689)
Q Consensus 616 ~lfs~~~~~c~~~~~illEm--DRILRP~G~~iirD~~ 651 (689)
..|... . ...++-.+ -|+|+|||.+++....
T Consensus 124 ~~~~~~----~-~~~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 124 PPYAKQ----E-IVSQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp CCGGGC----C-HHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred CCCCch----h-HHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 776521 1 13334444 8999999999997443
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=92.03 E-value=0.043 Score=56.20 Aligned_cols=91 Identities=19% Similarity=0.181 Sum_probs=51.1
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCC--C---C---Cch--hhhhc--cccchhhccccCCCCCCCccchhhcc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVH--A---P---DTL--PVIYD--RGLVGIYHDWCESFGTYPRSYDLLHA 614 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~--~---~---~tL--~vI~~--RGLig~yhdwce~f~typrTyDLlHa 614 (689)
..|+|+++|.|+|+..|... .|.-+-+-|.. + + +.+ .+.+- .| |. +.|+ +.+||+|-+
T Consensus 84 ~~VLDlGcGtG~~s~~la~~~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~------D~-~~l~--~~~fD~Vvs 154 (276)
T 2wa2_A 84 GTVVDLGCGRGSWSYYAASQPNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKV------DV-TKME--PFQADTVLC 154 (276)
T ss_dssp EEEEEESCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSC------CG-GGCC--CCCCSEEEE
T ss_pred CEEEEeccCCCHHHHHHHHcCCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccC------cH-hhCC--CCCcCEEEE
Confidence 57999999999999888765 33333333320 0 0 000 11111 11 21 2244 689999988
Q ss_pred cccccccc---CCcCCccceeeeeccccccCc--EEEEe
Q 044932 615 DHLFSRLK---SRCRQPVSIVVEMDRILRPGG--WAIVR 648 (689)
Q Consensus 615 ~~lfs~~~---~~c~~~~~illEmDRILRP~G--~~iir 648 (689)
+..+.... +.-.. ..+|-++.|+|+||| .+++.
T Consensus 155 d~~~~~~~~~~d~~~~-l~~L~~~~r~LkpGG~~~~v~~ 192 (276)
T 2wa2_A 155 DIGESNPTAAVEASRT-LTVLNVISRWLEYNQGCGFCVK 192 (276)
T ss_dssp CCCCCCSCHHHHHHHH-HHHHHHHHHHHHHSTTCEEEEE
T ss_pred CCCcCCCchhhhHHHH-HHHHHHHHHHhccCCCcEEEEE
Confidence 75422100 00000 125678899999999 88885
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=91.95 E-value=0.063 Score=49.45 Aligned_cols=59 Identities=25% Similarity=0.383 Sum_probs=41.7
Q ss_pred CCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeCchh----------hHHHHHHHHhhcce
Q 044932 605 YPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVE----------ILDPLEGILRSLHW 666 (689)
Q Consensus 605 yprTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~~----------~l~~v~~i~~~lrW 666 (689)
-+.+||+|.+..+|.... .+ ...+|-|+-|+|||||++++.+... .+..+...+..-.+
T Consensus 60 ~~~~fD~V~~~~~l~~~~--~~-~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 60 KESSFDIILSGLVPGSTT--LH-SAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp CSSCEEEEEECCSTTCCC--CC-CHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred CCCCEeEEEECChhhhcc--cC-HHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence 367999999988776551 23 2568999999999999999964321 15566666654444
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=91.91 E-value=0.02 Score=59.57 Aligned_cols=94 Identities=15% Similarity=0.197 Sum_probs=59.7
Q ss_pred CeeEEeecCCcchhHHHHhccC--CceEEEeccCCCCCchhhhhc-cccchhhccccCCCCCCCccchhhcccccccccc
Q 044932 546 KIRNVMDMKSIYGGFAAALAQQ--KIWVMNVVPVHAPDTLPVIYD-RGLVGIYHDWCESFGTYPRSYDLLHADHLFSRLK 622 (689)
Q Consensus 546 ~iRNvmDMna~~GgFAAal~~~--~vWVMNvvp~~~~~tL~vI~~-RGLig~yhdwce~f~typrTyDLlHa~~lfs~~~ 622 (689)
....|+|+++|.|.++.+|... .+-+..+ +-|..+...-. .++--+-+|..++ +| .||+|.+.++|..+.
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~---D~~~~~~~a~~~~~v~~~~~d~~~~---~~-~~D~v~~~~vlh~~~ 265 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVF---DQPQVVGNLTGNENLNFVGGDMFKS---IP-SADAVLLKWVLHDWN 265 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEE---ECHHHHSSCCCCSSEEEEECCTTTC---CC-CCSEEEEESCGGGSC
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEe---ccHHHHhhcccCCCcEEEeCccCCC---CC-CceEEEEcccccCCC
Confidence 4578999999999999999753 2322211 11111110000 1222223444443 45 499999999998886
Q ss_pred CC-cCCccceeeeecccccc---CcEEEEeC
Q 044932 623 SR-CRQPVSIVVEMDRILRP---GGWAIVRD 649 (689)
Q Consensus 623 ~~-c~~~~~illEmDRILRP---~G~~iirD 649 (689)
+. |. .+|-++-|+|+| ||.++|-|
T Consensus 266 d~~~~---~~l~~~~~~L~p~~~gG~l~i~e 293 (358)
T 1zg3_A 266 DEQSL---KILKNSKEAISHKGKDGKVIIID 293 (358)
T ss_dssp HHHHH---HHHHHHHHHTGGGGGGCEEEEEE
T ss_pred HHHHH---HHHHHHHHhCCCCCCCcEEEEEE
Confidence 53 33 488999999999 99998854
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=91.86 E-value=0.022 Score=55.29 Aligned_cols=89 Identities=18% Similarity=0.236 Sum_probs=48.9
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhc----cccchh---hccccCCCCCCCccchhhccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYD----RGLVGI---YHDWCESFGTYPRSYDLLHADHLFS 619 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~----RGLig~---yhdwce~f~typrTyDLlHa~~lfs 619 (689)
.+|+|+++|.|.+++.|...-- .+|+-++. +..+...-. .|+-.+ ..|....|+. ...||+|.++..+.
T Consensus 93 ~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~~~ 169 (235)
T 1jg1_A 93 MNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPP-KAPYDVIIVTAGAP 169 (235)
T ss_dssp CCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG-GCCEEEEEECSBBS
T ss_pred CEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCC-CCCccEEEECCcHH
Confidence 4799999999999998875310 12232321 122221111 222111 1122222211 12499998876654
Q ss_pred cccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 620 RLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 620 ~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
. +.-++-|+|+|||.++|--
T Consensus 170 ~----------~~~~~~~~L~pgG~lvi~~ 189 (235)
T 1jg1_A 170 K----------IPEPLIEQLKIGGKLIIPV 189 (235)
T ss_dssp S----------CCHHHHHTEEEEEEEEEEE
T ss_pred H----------HHHHHHHhcCCCcEEEEEE
Confidence 3 2336778999999998864
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=91.77 E-value=0.045 Score=56.56 Aligned_cols=99 Identities=19% Similarity=0.212 Sum_probs=54.3
Q ss_pred eEEeecCCcchhHHHHhccC--CceEEEeccCCCC-Cchhhhhcc----cc--chhhccccCCCCCCCccchhhcccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ--KIWVMNVVPVHAP-DTLPVIYDR----GL--VGIYHDWCESFGTYPRSYDLLHADHLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~--~vWVMNvvp~~~~-~tL~vI~~R----GL--ig~yhdwce~f~typrTyDLlHa~~lf 618 (689)
..|+||.||.|+++..|... +-. .|+-++-. .-|..+-.+ |+ |-+.+.=...++.++.+||+|-++--.
T Consensus 120 ~~VLDlg~G~G~~t~~la~~~~~~~--~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~Pc 197 (315)
T 1ixk_A 120 EIVADMAAAPGGKTSYLAQLMRNDG--VIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPC 197 (315)
T ss_dssp CEEEECCSSCSHHHHHHHHHTTTCS--EEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCT
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCC--EEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeCCC
Confidence 36999999999999888742 111 13333322 233333222 43 112221122333356789999875333
Q ss_pred cccc---CCcC---------------CccceeeeeccccccCcEEEEe
Q 044932 619 SRLK---SRCR---------------QPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 619 s~~~---~~c~---------------~~~~illEmDRILRP~G~~iir 648 (689)
|... ..=+ +...+|-++-|+|+|||.+++.
T Consensus 198 sg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~s 245 (315)
T 1ixk_A 198 TGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYS 245 (315)
T ss_dssp TSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 2211 0000 0035778899999999999995
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=91.75 E-value=0.19 Score=52.47 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=31.0
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE 351 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e 351 (689)
..++||.+||.|+.+.+|+.+ .|+|+|.+| .+++.|.+
T Consensus 23 gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp-----~Ai~~A~~ 62 (285)
T 1wg8_A 23 GGVYVDATLGGAGHARGILERGGRVIGLDQDP-----EAVARAKG 62 (285)
T ss_dssp TCEEEETTCTTSHHHHHHHHTTCEEEEEESCH-----HHHHHHHH
T ss_pred CCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCH-----HHHHHHHh
Confidence 468999999999999988875 599999886 46666654
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=91.63 E-value=0.28 Score=50.92 Aligned_cols=88 Identities=18% Similarity=0.176 Sum_probs=52.2
Q ss_pred hccccCCCCCCCccchhhcccccccccc-----C--CcCCccceeeeeccccccCcEEEEeC-chhhHHHHHHHHhhcce
Q 044932 595 YHDWCESFGTYPRSYDLLHADHLFSRLK-----S--RCRQPVSIVVEMDRILRPGGWAIVRD-KVEILDPLEGILRSLHW 666 (689)
Q Consensus 595 yhdwce~f~typrTyDLlHa~~lfs~~~-----~--~c~~~~~illEmDRILRP~G~~iirD-~~~~l~~v~~i~~~lrW 666 (689)
..|+.+ ++ ++.+||+|.++....... + .-.++..+|-++-|+|+|||.+++-. ...-...+..+++...|
T Consensus 112 ~gD~~~-~~-~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF 189 (290)
T 2xyq_A 112 IGDCAT-VH-TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSW 189 (290)
T ss_dssp ESCGGG-CC-CSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEE
T ss_pred ECcccc-CC-ccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCC
Confidence 345544 22 458899999874322110 0 01111357778999999999999854 22233467777777644
Q ss_pred -eEEEee--cCCCceEEEEEe
Q 044932 667 -EIRMTY--AQDKEGILCAQK 684 (689)
Q Consensus 667 -~~~~~~--~~~~E~iL~~~K 684 (689)
.+++.. ....|.+|+|+.
T Consensus 190 ~~v~~~asr~~s~e~~lv~~~ 210 (290)
T 2xyq_A 190 WTAFVTNVNASSSEAFLIGAN 210 (290)
T ss_dssp EEEEEEGGGTTSSCEEEEEEE
T ss_pred cEEEEEEcCCCchheEEecCC
Confidence 455541 233688888875
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=91.56 E-value=0.023 Score=62.69 Aligned_cols=94 Identities=17% Similarity=0.207 Sum_probs=58.5
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCCCch----hhhhcccc---chhhc-cccCCCCCCCccchhhccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAPDTL----PVIYDRGL---VGIYH-DWCESFGTYPRSYDLLHADHLFS 619 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~~tL----~vI~~RGL---ig~yh-dwce~f~typrTyDLlHa~~lfs 619 (689)
..|||+++|.|.++..|...+.. .|+-++...-+ ..+...|| |-+.+ |+-+ + .+|..||+|-+..++.
T Consensus 160 ~~VLDiGcGtG~la~~la~~~~~--~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~-~-~~~~~fD~Ivs~~~~~ 235 (480)
T 3b3j_A 160 KIVLDVGCGSGILSFFAAQAGAR--KIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEE-V-SLPEQVDIIISEPMGY 235 (480)
T ss_dssp CEEEEESCSTTHHHHHHHHTTCS--EEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTT-C-CCSSCEEEEECCCCHH
T ss_pred CEEEEecCcccHHHHHHHHcCCC--EEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhh-C-ccCCCeEEEEEeCchH
Confidence 47999999999999888766531 23333322112 22334455 22222 3322 2 3577899999987765
Q ss_pred cccCCcCCccceeeeeccccccCcEEEE
Q 044932 620 RLKSRCRQPVSIVVEMDRILRPGGWAIV 647 (689)
Q Consensus 620 ~~~~~c~~~~~illEmDRILRP~G~~ii 647 (689)
.+... .+ ..+|.++-|+|+|||.+++
T Consensus 236 ~~~~e-~~-~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 236 MLFNE-RM-LESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp HHTCH-HH-HHHHHHGGGGEEEEEEEES
T ss_pred hcCcH-HH-HHHHHHHHHhcCCCCEEEE
Confidence 44322 22 3466789999999999985
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=91.41 E-value=0.05 Score=55.91 Aligned_cols=137 Identities=15% Similarity=0.166 Sum_probs=71.2
Q ss_pred eeEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhhhhc------ccc----chhh-ccccCCCCC-CCccchhh
Q 044932 547 IRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPVIYD------RGL----VGIY-HDWCESFGT-YPRSYDLL 612 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~vI~~------RGL----ig~y-hdwce~f~t-yprTyDLl 612 (689)
-++|+|+++|.|+++..|... ++- .|+=++- +.-+.+.-+ .++ +-++ .|..+-... -+.+||+|
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~~~--~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 96 PERVLIIGGGDGGVLREVLRHGTVE--HCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp CCEEEEEECTTSHHHHHHHTCTTCC--EEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCeEEEEcCCCCHHHHHHHhCCCCC--EEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 368999999999999999865 332 2222221 111111110 010 1111 122221111 36789999
Q ss_pred ccccccccccCCcCCccceeeeeccccccCcEEEEeCch-----hhHHHHHHHHhhccee-EEEeec------CCCceEE
Q 044932 613 HADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKV-----EILDPLEGILRSLHWE-IRMTYA------QDKEGIL 680 (689)
Q Consensus 613 Ha~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~-----~~l~~v~~i~~~lrW~-~~~~~~------~~~E~iL 680 (689)
-++.........-.....++-++-|+|+|||.+++.... ..+..+.+.++...+. +.+... .+.-.++
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w~f~ 253 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMHVPTYPCGSIGTL 253 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCCEEE
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEeecccccCcceEEE
Confidence 986544322111100135677899999999999996322 3556666666655453 333321 2234588
Q ss_pred EEEec
Q 044932 681 CAQKT 685 (689)
Q Consensus 681 ~~~K~ 685 (689)
+|.|.
T Consensus 254 ~as~~ 258 (304)
T 3bwc_A 254 VCSKK 258 (304)
T ss_dssp EEESS
T ss_pred EEeCC
Confidence 88875
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=91.40 E-value=0.09 Score=49.44 Aligned_cols=114 Identities=11% Similarity=0.087 Sum_probs=68.1
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhh----hcccc-chhhccccCCCCCCCccchhhccccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVI----YDRGL-VGIYHDWCESFGTYPRSYDLLHADHLFSRL 621 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI----~~RGL-ig~yhdwce~f~typrTyDLlHa~~lfs~~ 621 (689)
..|+|+++|.|+|+.+|...+.- +|+-++. +..+... -..|+ +-+. |..+..+|.+||+|-++.-|...
T Consensus 51 ~~vlD~g~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~---~~d~~~~~~~~D~v~~~~p~~~~ 125 (207)
T 1wy7_A 51 KVVADLGAGTGVLSYGALLLGAK--EVICVEVDKEAVDVLIENLGEFKGKFKVF---IGDVSEFNSRVDIVIMNPPFGSQ 125 (207)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHTGGGTTSEEEE---ESCGGGCCCCCSEEEECCCCSSS
T ss_pred CEEEEeeCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHHHHcCCCEEEE---ECchHHcCCCCCEEEEcCCCccc
Confidence 47999999999999998766321 2333332 1222211 12232 1122 22223356799999998887765
Q ss_pred cCCcCCccceeeeeccccccCcEEEEe-CchhhHHHHHHHHhhcceeEEE
Q 044932 622 KSRCRQPVSIVVEMDRILRPGGWAIVR-DKVEILDPLEGILRSLHWEIRM 670 (689)
Q Consensus 622 ~~~c~~~~~illEmDRILRP~G~~iir-D~~~~l~~v~~i~~~lrW~~~~ 670 (689)
..... ..+|-++-|+| ||.+++. ........+..++....|++..
T Consensus 126 ~~~~~--~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 171 (207)
T 1wy7_A 126 RKHAD--RPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFVVTH 171 (207)
T ss_dssp STTTT--HHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEEEEE
T ss_pred cCCch--HHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCeEEE
Confidence 44333 34556666777 5555444 2667778888888777777654
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=91.31 E-value=0.072 Score=55.09 Aligned_cols=137 Identities=15% Similarity=0.117 Sum_probs=71.4
Q ss_pred eeEEeecCCcchhHHHHhccC-CceEEEeccCCCC-Cchhhhhc------cc-c----chhh-ccccCCCCCCCccchhh
Q 044932 547 IRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-DTLPVIYD------RG-L----VGIY-HDWCESFGTYPRSYDLL 612 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-~tL~vI~~------RG-L----ig~y-hdwce~f~typrTyDLl 612 (689)
-++|+|+++|.|+++..|... ++- +|+-++-. .-+.+.-+ .| + |-+. -|..+-+...+.+||+|
T Consensus 78 ~~~VLdiG~G~G~~~~~l~~~~~~~--~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 78 PKRVLIVGGGEGATLREVLKHPTVE--KAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp CCEEEEEECTTSHHHHHHTTSTTCC--EEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCeEEEEcCCcCHHHHHHHhcCCCC--EEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 368999999999999999876 332 22222211 11111100 11 0 1111 11111122247889999
Q ss_pred ccccccccccCCcC---C-ccceeeeeccccccCcEEEEeC------chhhHHHHHHHHhhcceeEEEee----c-CCCc
Q 044932 613 HADHLFSRLKSRCR---Q-PVSIVVEMDRILRPGGWAIVRD------KVEILDPLEGILRSLHWEIRMTY----A-QDKE 677 (689)
Q Consensus 613 Ha~~lfs~~~~~c~---~-~~~illEmDRILRP~G~~iirD------~~~~l~~v~~i~~~lrW~~~~~~----~-~~~E 677 (689)
-++.... ....+. + ...++-++-|+|+|||.+++.- ..+.+..+.+.++..--.+.... . .+.-
T Consensus 156 i~d~~~~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~~~g~~ 234 (314)
T 1uir_A 156 IIDLTDP-VGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNF 234 (314)
T ss_dssp EEECCCC-BSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEEE
T ss_pred EECCCCc-ccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCCceEEEEEecCCCCCeE
Confidence 9875432 200011 0 1456778999999999999872 23445555555544433333321 1 1223
Q ss_pred eEEEEEecc
Q 044932 678 GILCAQKTM 686 (689)
Q Consensus 678 ~iL~~~K~~ 686 (689)
.+++|.|.+
T Consensus 235 ~~~~as~~~ 243 (314)
T 1uir_A 235 GFLLASDAF 243 (314)
T ss_dssp EEEEEESSS
T ss_pred EEEEEECCC
Confidence 578888863
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=91.31 E-value=0.049 Score=55.89 Aligned_cols=98 Identities=18% Similarity=0.112 Sum_probs=55.0
Q ss_pred cCCCCCCeeEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhh----ccccch--h-hccccCCCCCCCccchh
Q 044932 540 LGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIY----DRGLVG--I-YHDWCESFGTYPRSYDL 611 (689)
Q Consensus 540 l~~~~~~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~----~RGLig--~-yhdwce~f~typrTyDL 611 (689)
+.+..+ ..|+|+++|.|+|++.|.....=--+|+-++- +..+...- ..|+-. + ..|..+.+ ..+.+||+
T Consensus 71 l~~~~~--~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~-~~~~~fD~ 147 (317)
T 1dl5_A 71 VGLDKG--MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV-PEFSPYDV 147 (317)
T ss_dssp TTCCTT--CEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC-GGGCCEEE
T ss_pred cCCCCc--CEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcc-ccCCCeEE
Confidence 344444 47999999999999888653100001222221 22222222 224321 1 12332211 12468999
Q ss_pred hccccccccccCCcCCccceeeeeccccccCcEEEEeCc
Q 044932 612 LHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDK 650 (689)
Q Consensus 612 lHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~ 650 (689)
|.+.+.+.... -++-|+|+|||.++|...
T Consensus 148 Iv~~~~~~~~~----------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 148 IFVTVGVDEVP----------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp EEECSBBSCCC----------HHHHHHEEEEEEEEEEBC
T ss_pred EEEcCCHHHHH----------HHHHHhcCCCcEEEEEEC
Confidence 99988775432 356789999999999754
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=91.26 E-value=0.45 Score=50.42 Aligned_cols=104 Identities=13% Similarity=-0.003 Sum_probs=57.4
Q ss_pred CCCeEEEECC------ccchhHHH-hhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEe
Q 044932 308 NIRVVLEIGS------ADLSFVAS-LLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGC------GtGsfaa~-La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhc 378 (689)
...+|||+|| -.|++..+ +... -|+++|+.|... ....+...|...+ ...+.||+|++
T Consensus 109 ~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~s------------da~~~IqGD~~~~-~~~~k~DLVIS 175 (344)
T 3r24_A 109 YNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVS------------DADSTLIGDCATV-HTANKWDLIIS 175 (344)
T ss_dssp TTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBC------------SSSEEEESCGGGE-EESSCEEEEEE
T ss_pred CCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccccc------------CCCeEEEcccccc-ccCCCCCEEEe
Confidence 4689999996 67775433 3333 478889887532 1112233342222 22478999997
Q ss_pred cc----ccccccc-----cHHHHHHH-HHhccCCCcEEEEEcCCCchhHHHHHHHHHH
Q 044932 379 DG----CSITWHA-----HGGKLLLE-MNRILRPSGYFILSTKHDSIEEEEALTTLTA 426 (689)
Q Consensus 379 s~----cli~W~~-----d~~~aL~E-I~RVLRPGG~fVIsdp~~~le~~~~ie~La~ 426 (689)
-. .-+--.+ ....+..+ +.++|+|||.|++-....--. +.+.++.+
T Consensus 176 DMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~--~~L~~lrk 231 (344)
T 3r24_A 176 DMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWN--ADLYKLMG 231 (344)
T ss_dssp CCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCC--HHHHHHHT
T ss_pred cCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCH--HHHHHHHh
Confidence 31 0000011 12233333 456899999999986543322 23555555
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=91.18 E-value=0.046 Score=64.76 Aligned_cols=99 Identities=11% Similarity=0.139 Sum_probs=63.4
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhc----------ccc--chhhccccCCCCCCCccchhhcc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYD----------RGL--VGIYHDWCESFGTYPRSYDLLHA 614 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~----------RGL--ig~yhdwce~f~typrTyDLlHa 614 (689)
..|||+++|.|.|+.+|....-..-+|+-++-. .-|...-. .|+ |-+++.=-+.++..+.+||+|.+
T Consensus 723 ~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlVV~ 802 (950)
T 3htx_A 723 STLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGTC 802 (950)
T ss_dssp SEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEEEE
T ss_pred CEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEEEE
Confidence 469999999999999998764111134444432 22222211 243 33334334456667799999999
Q ss_pred ccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 615 DHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 615 ~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
..+|..+.+.-. ..++-+|-|+|||| ++||..
T Consensus 803 ~eVLeHL~dp~l--~~~L~eI~RvLKPG-~LIIST 834 (950)
T 3htx_A 803 LEVIEHMEEDQA--CEFGEKVLSLFHPK-LLIVST 834 (950)
T ss_dssp ESCGGGSCHHHH--HHHHHHHHHTTCCS-EEEEEE
T ss_pred eCchhhCChHHH--HHHHHHHHHHcCCC-EEEEEe
Confidence 999987654221 24677999999999 777753
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=91.05 E-value=0.13 Score=50.76 Aligned_cols=105 Identities=22% Similarity=0.269 Sum_probs=60.6
Q ss_pred EEeecCCcchhHHHHhccC---CceEEEeccCCC-CCchhhhhcc-----c-cch----hhccccCCCCCCCccchhhcc
Q 044932 549 NVMDMKSIYGGFAAALAQQ---KIWVMNVVPVHA-PDTLPVIYDR-----G-LVG----IYHDWCESFGTYPRSYDLLHA 614 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~---~vWVMNvvp~~~-~~tL~vI~~R-----G-Lig----~yhdwce~f~typrTyDLlHa 614 (689)
.|+|+++|.|.++++|... .. +|+-++- +..+...-.+ | +.. +..|.++. +.-+.+||+|-+
T Consensus 102 ~vLdiG~G~G~~~~~l~~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~-~~~~~~~D~v~~ 177 (280)
T 1i9g_A 102 RVLEAGAGSGALTLSLLRAVGPAG---QVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS-ELPDGSVDRAVL 177 (280)
T ss_dssp EEEEECCTTSHHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC-CCCTTCEEEEEE
T ss_pred EEEEEcccccHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc-CCCCCceeEEEE
Confidence 6999999999999988753 22 2444443 2233222222 3 111 12233332 222578998876
Q ss_pred ccccccccCCcCCccceeeeeccccccCcEEEEeC-chhhHHHHHHHHhh-cce
Q 044932 615 DHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD-KVEILDPLEGILRS-LHW 666 (689)
Q Consensus 615 ~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD-~~~~l~~v~~i~~~-lrW 666 (689)
+.. . ...+|-++-|+|+|||.+++-. ..+-+.++...+.. ..|
T Consensus 178 ~~~--------~-~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f 222 (280)
T 1i9g_A 178 DML--------A-PWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCW 222 (280)
T ss_dssp ESS--------C-GGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSB
T ss_pred CCc--------C-HHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCc
Confidence 321 2 2467889999999999988864 34444454444443 444
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=90.95 E-value=0.038 Score=52.84 Aligned_cols=98 Identities=9% Similarity=0.030 Sum_probs=56.0
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhh----hcccc--chhh-ccccCCCCCCCccchhhccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVI----YDRGL--VGIY-HDWCESFGTYPRSYDLLHADHLFS 619 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI----~~RGL--ig~y-hdwce~f~typrTyDLlHa~~lfs 619 (689)
..|+|+.+|.|.++.++.....- .|+-++.. ..+.+. -..|+ |-++ .|..+.++..+.+||+|=++..|.
T Consensus 56 ~~vLDlgcG~G~~~~~l~~~~~~--~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~ 133 (202)
T 2fpo_A 56 AQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 133 (202)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred CeEEEeCCCcCHHHHHHHhcCCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence 46999999999998875544321 34444432 222222 12232 1122 233332344567899998876654
Q ss_pred cccCCcCCccceeeee--ccccccCcEEEEeCchh
Q 044932 620 RLKSRCRQPVSIVVEM--DRILRPGGWAIVRDKVE 652 (689)
Q Consensus 620 ~~~~~c~~~~~illEm--DRILRP~G~~iirD~~~ 652 (689)
. -. ...++-++ -|+|+|||.+++.....
T Consensus 134 ~----~~-~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 134 R----GL-LEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp T----TT-HHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred C----Cc-HHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 1 11 23445455 45799999999986543
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=90.83 E-value=0.15 Score=50.82 Aligned_cols=107 Identities=20% Similarity=0.171 Sum_probs=64.9
Q ss_pred eEEeecCCcchhHHHHhccC--CceEEEeccCCC-CCchhhhhcc----cc---c-hhhccccCCCCCCCccchhhcccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ--KIWVMNVVPVHA-PDTLPVIYDR----GL---V-GIYHDWCESFGTYPRSYDLLHADH 616 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~--~vWVMNvvp~~~-~~tL~vI~~R----GL---i-g~yhdwce~f~typrTyDLlHa~~ 616 (689)
..|+|+++|.|.++.+|... +-. +|+-++. +..+.+.-.+ |+ + -+..|..+.|+ +.+||+|-++.
T Consensus 114 ~~VLDiG~G~G~~~~~la~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~D~V~~~~ 189 (277)
T 1o54_A 114 DRIIDTGVGSGAMCAVLARAVGSSG--KVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD--EKDVDALFLDV 189 (277)
T ss_dssp CEEEEECCTTSHHHHHHHHHTTTTC--EEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS--CCSEEEEEECC
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCc--EEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHccc--CCccCEEEECC
Confidence 37999999999999888654 111 3444443 2333333222 33 1 12234444432 35799886531
Q ss_pred ccccccCCcCCccceeeeeccccccCcEEEEeCc-hhhHHHHHHHHhhccee
Q 044932 617 LFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDK-VEILDPLEGILRSLHWE 667 (689)
Q Consensus 617 lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~-~~~l~~v~~i~~~lrW~ 667 (689)
.+ ...+|-++-|+|+|||.+++-.. .+-+.++...+....|.
T Consensus 190 -------~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~ 232 (277)
T 1o54_A 190 -------PD--PWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI 232 (277)
T ss_dssp -------SC--GGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred -------cC--HHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence 11 24578889999999999998765 34566666666666665
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=90.23 E-value=0.12 Score=53.31 Aligned_cols=136 Identities=16% Similarity=0.193 Sum_probs=68.7
Q ss_pred eeEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhhhhc------ccc----chhh-ccccCCCCCCCccchhhc
Q 044932 547 IRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPVIYD------RGL----VGIY-HDWCESFGTYPRSYDLLH 613 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~vI~~------RGL----ig~y-hdwce~f~typrTyDLlH 613 (689)
-++|+|+++|.|+++..|... ++- .|+-++- +.-+.+.-. .|+ |-++ -|-.+-++..+.+||+|-
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~~~--~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 96 PRKVLIIGGGDGGVLREVVKHPSVE--SVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTTCC--EEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCEEEEECCCchHHHHHHHHcCCCC--EEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 478999999999999999876 332 2222221 111111110 122 1111 111111233468999998
Q ss_pred cccccccccC-CcCCccceeeeeccccccCcEEEEeCc-----hhhHHHHHHHHhhcceeEEEe------ecCCCceEEE
Q 044932 614 ADHLFSRLKS-RCRQPVSIVVEMDRILRPGGWAIVRDK-----VEILDPLEGILRSLHWEIRMT------YAQDKEGILC 681 (689)
Q Consensus 614 a~~lfs~~~~-~c~~~~~illEmDRILRP~G~~iirD~-----~~~l~~v~~i~~~lrW~~~~~------~~~~~E~iL~ 681 (689)
++........ .-. ...++-++-|+|+|||.+++... .+.+..+.+.++.+-=.++.. +..+.-.+++
T Consensus 174 ~d~~~~~~~~~~l~-~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~~g~~g~~~ 252 (304)
T 2o07_A 174 TDSSDPMGPAESLF-KESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFML 252 (304)
T ss_dssp EECC------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEE
T ss_pred ECCCCCCCcchhhh-HHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHhCCCceeEEEEeccccCcceEEEE
Confidence 8643221100 000 13456788899999999999752 234444544443332233322 1112235788
Q ss_pred EEec
Q 044932 682 AQKT 685 (689)
Q Consensus 682 ~~K~ 685 (689)
|.|.
T Consensus 253 as~~ 256 (304)
T 2o07_A 253 CSKN 256 (304)
T ss_dssp EESS
T ss_pred EeCC
Confidence 8775
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 689 | |||
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.68 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.68 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.66 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.66 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.63 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.62 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.56 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.53 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.53 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.52 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.5 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.49 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.48 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.45 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.43 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.41 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.4 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.39 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.38 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.36 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.35 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.33 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.31 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.3 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.28 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.25 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.24 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.22 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.21 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.2 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.2 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.17 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.16 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.09 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.08 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.08 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.04 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.02 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.02 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.01 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 98.96 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 98.93 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.88 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 98.86 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 98.84 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 98.84 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.73 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.65 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.58 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.56 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.46 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.4 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.36 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.35 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.32 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.27 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.25 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.16 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.0 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 97.97 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 97.95 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 97.94 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 97.94 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 97.84 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 97.82 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 97.78 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 97.75 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 97.72 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.71 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 97.69 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 97.65 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 97.65 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 97.58 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.54 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 97.45 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.39 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 97.36 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.28 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.13 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 97.04 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 97.03 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 97.02 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.01 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.0 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 96.99 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 96.92 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 96.92 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 96.9 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 96.82 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 96.81 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 96.78 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 96.78 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 96.7 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 96.62 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 96.6 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 96.57 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 96.54 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 96.39 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 96.35 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.34 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 96.33 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 96.25 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 96.21 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 96.18 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 96.14 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 96.13 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 96.11 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 96.1 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 96.09 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 96.06 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 96.05 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 96.0 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 95.98 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 95.97 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 95.97 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 95.82 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 95.53 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 95.42 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 95.42 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 95.27 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 95.15 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 95.11 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 95.04 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 95.02 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 94.91 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 94.7 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 94.63 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 94.32 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 93.97 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 93.62 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 93.61 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 93.53 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 93.28 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 92.93 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 92.71 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 92.53 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 92.49 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 92.35 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 92.23 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 91.64 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 91.62 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 90.15 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 90.05 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 90.04 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 89.7 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 89.22 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 88.89 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 88.73 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 88.12 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 87.97 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 87.48 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 87.38 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 87.02 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 86.98 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 85.94 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 84.02 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 82.1 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 80.92 |
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.68 E-value=3.6e-17 Score=156.29 Aligned_cols=98 Identities=28% Similarity=0.459 Sum_probs=84.8
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEecccccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWH 386 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~ 386 (689)
..+|||+|||+|.++..|+.. .|+|+|+++ .|++.|.+++.... ..+++..|||++++||+|+|....++|.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~-----~~l~~a~~~~~~~~-~~~~~~~l~~~~~~fD~ii~~~~~~~~~ 116 (246)
T d2avna1 43 PCRVLDLGGGTGKWSLFLQERGFEVVLVDPSK-----EMLEVAREKGVKNV-VEAKAEDLPFPSGAFEAVLALGDVLSYV 116 (246)
T ss_dssp CCEEEEETCTTCHHHHHHHTTTCEEEEEESCH-----HHHHHHHHHTCSCE-EECCTTSCCSCTTCEEEEEECSSHHHHC
T ss_pred CCEEEEECCCCchhcccccccceEEEEeeccc-----cccccccccccccc-ccccccccccccccccceeeecchhhhh
Confidence 468999999999999999876 489998875 68999999876543 3467789999999999999877777888
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 387 AHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 387 ~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
.++..+|.++.|+|||||+|+++.+.
T Consensus 117 ~d~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 117 ENKDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred hhHHHHHHHHHhhcCcCcEEEEEECC
Confidence 89999999999999999999999865
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.68 E-value=5.4e-17 Score=157.11 Aligned_cols=111 Identities=23% Similarity=0.340 Sum_probs=87.5
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH----cCCC-cEEecCCC
Q 044932 291 HYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE----RGFP-AVVSPLGN 363 (689)
Q Consensus 291 ~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e----RGL~-~i~~~~dt 363 (689)
++.++|.+.++ ++ +..+|||||||+|.++..|+.. .|+|+|+++ .|++.|.+ +++. ..+...++
T Consensus 3 ~~~~~l~~~~~-~~---~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~-----~~l~~A~~~~~~~~~~~~~~~~~d~ 73 (234)
T d1xxla_ 3 HSLGLMIKTAE-CR---AEHRVLDIGAGAGHTALAFSPYVQECIGVDATK-----EMVEVASSFAQEKGVENVRFQQGTA 73 (234)
T ss_dssp HHHHHHHHHHT-CC---TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCH-----HHHHHHHHHHHHHTCCSEEEEECBT
T ss_pred hHHHHHHHHhC-CC---CCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCCh-----hhhhhhhhhhccccccccccccccc
Confidence 45566666554 43 4578999999999999999875 599999886 45555543 4655 34556778
Q ss_pred CCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 364 RRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 364 ~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
+.+||++++||+|+|..+ ++|..++..+|+|+.|+|||||++++.+.
T Consensus 74 ~~~~~~~~~fD~v~~~~~-l~~~~d~~~~l~~~~r~LkpgG~~~~~~~ 120 (234)
T d1xxla_ 74 ESLPFPDDSFDIITCRYA-AHHFSDVRKAVREVARVLKQDGRFLLVDH 120 (234)
T ss_dssp TBCCSCTTCEEEEEEESC-GGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccceeeeece-eecccCHHHHHHHHHHeeCCCcEEEEEEc
Confidence 899999999999999865 46688999999999999999999999754
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.66 E-value=1.2e-16 Score=150.82 Aligned_cols=114 Identities=20% Similarity=0.241 Sum_probs=85.9
Q ss_pred hHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH----cCCCcEEecC
Q 044932 288 GVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE----RGFPAVVSPL 361 (689)
Q Consensus 288 ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e----RGL~~i~~~~ 361 (689)
.+......+.++++ ...+|||||||+|.++..|++. .|+|+|+++ .|++.|++ .+....+...
T Consensus 23 ~~~~~~~~~~~~l~------~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~-----~~i~~ak~~~~~~~~~~~~~~~ 91 (226)
T d1ve3a1 23 RIETLEPLLMKYMK------KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISE-----DMIRKAREYAKSRESNVEFIVG 91 (226)
T ss_dssp HHHHHHHHHHHSCC------SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHHTTCCCEEEEC
T ss_pred HHHHHHHHHHHhcC------CCCEEEEECCCcchhhhhHhhhhcccccccccc-----cchhhhhhhhcccccccccccc
Confidence 33444444545544 2358999999999999988875 589999875 46666554 3555666667
Q ss_pred CCCCCCCCCCCcceEEecccccccc-ccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 362 GNRRLPFPSGVFDAIHCDGCSITWH-AHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 362 dt~~LPFpD~SFDlVhcs~cli~W~-~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
++..+||++++||+|+|..++.++. .+...+|.++.|+|||||+|+|..+.
T Consensus 92 d~~~l~~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 92 DARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp CTTSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccccccccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 8889999999999999987654432 36678999999999999999998764
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.66 E-value=1.3e-16 Score=152.34 Aligned_cols=98 Identities=16% Similarity=0.298 Sum_probs=79.0
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH----cCCCc-EEecCCCCCCCCCCCCcceEEecc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE----RGFPA-VVSPLGNRRLPFPSGVFDAIHCDG 380 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e----RGL~~-i~~~~dt~~LPFpD~SFDlVhcs~ 380 (689)
+..+|||||||+|.++..|+.. .|+|+|+++ .|++.|++ .+.+. .+.+.+.+.+||++++||+|+|..
T Consensus 15 ~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~-----~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~ 89 (231)
T d1vl5a_ 15 GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTE-----DILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRI 89 (231)
T ss_dssp SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCH-----HHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEES
T ss_pred CcCEEEEecccCcHHHHHHHHhCCEEEEEECCH-----HHHhhhhhcccccccccccccccccccccccccccccccccc
Confidence 3579999999999999888865 589999886 45555543 35553 356778889999999999999986
Q ss_pred ccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 381 CSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 381 cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
++ +|..++..+|.|++|+|||||+|+|.+.
T Consensus 90 ~l-~~~~d~~~~l~~~~r~LkpgG~l~i~~~ 119 (231)
T d1vl5a_ 90 AA-HHFPNPASFVSEAYRVLKKGGQLLLVDN 119 (231)
T ss_dssp CG-GGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc-cccCCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 54 6678999999999999999999999753
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.63 E-value=6.7e-16 Score=153.81 Aligned_cols=98 Identities=17% Similarity=0.213 Sum_probs=78.9
Q ss_pred CCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHH----cCCC--cEEecCCCCCCCCCCCCcceEEe
Q 044932 308 NIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALE----RGFP--AVVSPLGNRRLPFPSGVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~e----RGL~--~i~~~~dt~~LPFpD~SFDlVhc 378 (689)
+..+|||||||+|.++.+|+.+ .|+|+|+++. |++.|.+ .|+. ..+...+...+||++++||+|+|
T Consensus 67 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~-----~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~ 141 (282)
T d2o57a1 67 RQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPV-----QNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWS 141 (282)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHH-----HHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEE
T ss_pred CCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccch-----hhhhhhcccccccccccccccccccccccccccccchhhc
Confidence 4579999999999998888753 5899998874 5555444 4664 34566778899999999999998
Q ss_pred ccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 379 DGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
..++.| .+++..+|.|+.|+|||||+|++.++
T Consensus 142 ~~~l~h-~~d~~~~l~~~~~~LkpgG~l~~~~~ 173 (282)
T d2o57a1 142 QDAFLH-SPDKLKVFQECARVLKPRGVMAITDP 173 (282)
T ss_dssp ESCGGG-CSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cchhhh-ccCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 866544 57899999999999999999999864
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.62 E-value=1.2e-15 Score=144.29 Aligned_cols=115 Identities=22% Similarity=0.243 Sum_probs=91.9
Q ss_pred CeEEEECCccchhHHHhhcCCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccccccccH
Q 044932 310 RVVLEIGSADLSFVASLLAKEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWHAHG 389 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~~d~ 389 (689)
.+|||||||+|.++..|. .++|+|+++ .|++.|.++++. +...+...+|+++++||+|+|..++ +|..++
T Consensus 38 ~~vLDiGcG~G~~~~~~~--~~~giD~s~-----~~~~~a~~~~~~--~~~~d~~~l~~~~~~fD~I~~~~~l-~h~~d~ 107 (208)
T d1vlma_ 38 GRGVEIGVGTGRFAVPLK--IKIGVEPSE-----RMAEIARKRGVF--VLKGTAENLPLKDESFDFALMVTTI-CFVDDP 107 (208)
T ss_dssp SCEEEETCTTSTTHHHHT--CCEEEESCH-----HHHHHHHHTTCE--EEECBTTBCCSCTTCEEEEEEESCG-GGSSCH
T ss_pred CeEEEECCCCcccccccc--eEEEEeCCh-----hhcccccccccc--ccccccccccccccccccccccccc-cccccc
Confidence 469999999999988885 468998875 688899988754 4455678899999999999998654 557889
Q ss_pred HHHHHHHHhccCCCcEEEEEcCCCc--h-------------------hHHHHHHHHHHhcceeEEE
Q 044932 390 GKLLLEMNRILRPSGYFILSTKHDS--I-------------------EEEEALTTLTASICWNILA 434 (689)
Q Consensus 390 ~~aL~EI~RVLRPGG~fVIsdp~~~--l-------------------e~~~~ie~La~~l~W~~v~ 434 (689)
..+|.++.|+|+|||++++.++... . ...+.+..+++..+|+.+.
T Consensus 108 ~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~ 173 (208)
T d1vlma_ 108 ERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFK 173 (208)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred ccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEE
Confidence 9999999999999999999976421 0 1235688889999997653
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.56 E-value=4.8e-15 Score=143.02 Aligned_cols=99 Identities=22% Similarity=0.276 Sum_probs=79.7
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH----cCCCcEEecCCCCCCCCCCCCcceEEeccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE----RGFPAVVSPLGNRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e----RGL~~i~~~~dt~~LPFpD~SFDlVhcs~c 381 (689)
..++|||||||+|.++..|+.. .|+|+|+|+ +|+..|.+ +++...+...+++.||++ ++||+|+|...
T Consensus 41 ~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~-----~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~ 114 (251)
T d1wzna1 41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHE-----EMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFS 114 (251)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSS
T ss_pred CCCEEEEeCCCCCccchhhcccceEEEEEeecc-----ccccccccccccccccchheehhhhhcccc-cccchHhhhhh
Confidence 4678999999999999888765 589999886 45555554 466677778888999998 69999999865
Q ss_pred ccccc--ccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 382 SITWH--AHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 382 li~W~--~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
.++|. .+...+|.+++|+|||||+|++..+.
T Consensus 115 ~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 115 TIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp GGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 55544 35678999999999999999998764
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=8.9e-15 Score=146.06 Aligned_cols=106 Identities=22% Similarity=0.282 Sum_probs=82.8
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCC
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRR 365 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~ 365 (689)
+.....|...++. ...+|||||||+|.++..|++. .++|+|+++ .|++.|.++.....+.+.++..
T Consensus 71 ~~~~~~l~~~~~~-----~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~-----~~~~~a~~~~~~~~~~~~d~~~ 140 (268)
T d1p91a_ 71 DAIVAQLRERLDD-----KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSK-----VAIKAAAKRYPQVTFCVASSHR 140 (268)
T ss_dssp HHHHHHHHHHSCT-----TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCH-----HHHHHHHHHCTTSEEEECCTTS
T ss_pred HHHHHHHHHhcCC-----CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchH-----hhhhhhhcccccccceeeehhh
Confidence 3444445554441 4578999999999999888754 477888875 6888888887666677788899
Q ss_pred CCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 366 LPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 366 LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
|||++++||+|+|..... .+.|+.|||||||+|++.+|..
T Consensus 141 l~~~~~sfD~v~~~~~~~--------~~~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 141 LPFSDTSMDAIIRIYAPC--------KAEELARVVKPGGWVITATPGP 180 (268)
T ss_dssp CSBCTTCEEEEEEESCCC--------CHHHHHHHEEEEEEEEEEEECT
T ss_pred ccCCCCCEEEEeecCCHH--------HHHHHHHHhCCCcEEEEEeeCC
Confidence 999999999999864332 2689999999999999998754
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.8e-14 Score=138.57 Aligned_cols=125 Identities=16% Similarity=0.159 Sum_probs=95.1
Q ss_pred CCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHc----CCCc-EEecCCCCCCCCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALER----GFPA-VVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eR----GL~~-i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
...+|||||||+|.++.+|+.. .|+++|+++ .|++.|+++ +... .+...+.+.+++++++||+|+|.
T Consensus 60 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~-----~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~ 134 (222)
T d2ex4a1 60 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITE-----DFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQ 134 (222)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCH-----HHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEE
T ss_pred CCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCH-----HHhhccccccccccccccccccccccccccccccccccccc
Confidence 4578999999999999887643 489999875 678887765 2322 45677888899999999999998
Q ss_pred cccccccccH--HHHHHHHHhccCCCcEEEEEcCCC------------chhHHHHHHHHHHhcceeEEEeecc
Q 044932 380 GCSITWHAHG--GKLLLEMNRILRPSGYFILSTKHD------------SIEEEEALTTLTASICWNILAHKTD 438 (689)
Q Consensus 380 ~cli~W~~d~--~~aL~EI~RVLRPGG~fVIsdp~~------------~le~~~~ie~La~~l~W~~v~~~~~ 438 (689)
.++.| ..++ ..+|.++.|+|||||+|++.++.. .....+.+.++++..+|+++....+
T Consensus 135 ~~l~h-~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~q 206 (222)
T d2ex4a1 135 WVIGH-LTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQ 206 (222)
T ss_dssp SCGGG-SCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEEC
T ss_pred ccccc-chhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEEe
Confidence 76544 4443 579999999999999999986421 1113456889999999988765543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=1.3e-14 Score=141.24 Aligned_cols=108 Identities=10% Similarity=0.130 Sum_probs=81.4
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHH----cCCC--cEEecCCC
Q 044932 293 LESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALE----RGFP--AVVSPLGN 363 (689)
Q Consensus 293 id~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~e----RGL~--~i~~~~dt 363 (689)
++.|...+. +. ++.+|||||||+|.++.+|+.. .|+|+|+++ .|++.|++ .|+. ..+...+.
T Consensus 22 ~~~l~~~~~-l~---pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~-----~~~~~ar~~~~~~gl~~~v~~~~~d~ 92 (245)
T d1nkva_ 22 YATLGRVLR-MK---PGTRILDLGSGSGEMLCTWARDHGITGTGIDMSS-----LFTAQAKRRAEELGVSERVHFIHNDA 92 (245)
T ss_dssp HHHHHHHTC-CC---TTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCH-----HHHHHHHHHHHHTTCTTTEEEEESCC
T ss_pred HHHHHHHcC-CC---CCCEEEEEcCCCCHHHHHHHHhcCCEEEEEeccc-----chhhHHHHHHHHhhccccchhhhhHH
Confidence 455666554 33 3578999999999998887642 488898876 45555544 4665 34556677
Q ss_pred CCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 364 RRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 364 ~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
..+ +++++||+|+|..++. |..++..+|.|++|+|||||+|++.++
T Consensus 93 ~~~-~~~~~fD~v~~~~~~~-~~~d~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 93 AGY-VANEKCDVAACVGATW-IAGGFAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp TTC-CCSSCEEEEEEESCGG-GTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred hhc-cccCceeEEEEEehhh-ccCCHHHHHHHHHHHcCcCcEEEEEec
Confidence 777 5789999999987654 466889999999999999999999864
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.50 E-value=9.6e-14 Score=133.92 Aligned_cols=130 Identities=15% Similarity=0.108 Sum_probs=97.2
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCC-cEEecCCCCCCCCCCCCcceEEeccccccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFP-AVVSPLGNRRLPFPSGVFDAIHCDGCSITW 385 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~-~i~~~~dt~~LPFpD~SFDlVhcs~cli~W 385 (689)
..+|||||||+|.++..|+.. .|+|+|+++ .+++.|+.+... ..+...+...+++ +++||+|+|... ++|
T Consensus 21 ~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~-----~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~v-leh 93 (225)
T d2p7ia1 21 PGNLLELGSFKGDFTSRLQEHFNDITCVEASE-----EAISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTHV-LEH 93 (225)
T ss_dssp SSCEEEESCTTSHHHHHHTTTCSCEEEEESCH-----HHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEESC-GGG
T ss_pred CCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcH-----HHhhhhhccccccccccccccccccc-ccccccccccce-eEe
Confidence 357999999999999999865 599999875 688888876332 2333444556666 489999998754 566
Q ss_pred cccHHHHHHHHH-hccCCCcEEEEEcCCCc------------------------------hhHHHHHHHHHHhcceeEEE
Q 044932 386 HAHGGKLLLEMN-RILRPSGYFILSTKHDS------------------------------IEEEEALTTLTASICWNILA 434 (689)
Q Consensus 386 ~~d~~~aL~EI~-RVLRPGG~fVIsdp~~~------------------------------le~~~~ie~La~~l~W~~v~ 434 (689)
..++..+|.++. |+|||||++++..|... .-....++.++...+++++.
T Consensus 94 ~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~ 173 (225)
T d2p7ia1 94 IDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTY 173 (225)
T ss_dssp CSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEE
T ss_pred cCCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEE
Confidence 789999999998 89999999999875310 00135689999999998765
Q ss_pred eeccccCceeEEEEEeCCCc
Q 044932 435 HKTDEISEMGVKIYQKPESN 454 (689)
Q Consensus 435 ~~~~~~g~~~i~IwqKp~~~ 454 (689)
.. .++-||..+
T Consensus 174 ~~---------~~~~kp~~~ 184 (225)
T d2p7ia1 174 RS---------GIFFKALAN 184 (225)
T ss_dssp EE---------EEEECCSCH
T ss_pred EE---------EEEeccccH
Confidence 32 356788765
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.49 E-value=4.4e-14 Score=141.69 Aligned_cols=113 Identities=14% Similarity=0.127 Sum_probs=86.9
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHc----CCCcEEec
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALER----GFPAVVSP 360 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eR----GL~~i~~~ 360 (689)
+.|+.+|...+..+. ...+|||+|||+|.++..|+.. .|+|+|+++ .|++.|+++ ++...+..
T Consensus 12 ~d~l~~l~~~~~~~~---~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~-----~~l~~a~~~~~~~~~~~~f~~ 83 (281)
T d2gh1a1 12 DDYVSFLVNTVWKIT---KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGE-----TLLAEARELFRLLPYDSEFLE 83 (281)
T ss_dssp HHHHHHHHHTTSCCC---SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCH-----HHHHHHHHHHHSSSSEEEEEE
T ss_pred HHHHHHHHHHHhccC---CcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecch-----hHhhhhhcccccccccccccc
Confidence 456776765443222 4578999999999999888752 489999876 466666554 44455666
Q ss_pred CCCCCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 361 LGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 361 ~dt~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
.+...+|++ ++||+|+|..++ +|..++..+|.++.|+|||||+|++.++.
T Consensus 84 ~d~~~~~~~-~~fD~v~~~~~l-~~~~d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 84 GDATEIELN-DKYDIAICHAFL-LHMTTPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp SCTTTCCCS-SCEEEEEEESCG-GGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ccccccccc-CCceEEEEehhh-hcCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 777889987 589999998655 55789999999999999999999998864
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.48 E-value=5.1e-14 Score=136.62 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=78.0
Q ss_pred CCCeEEEECCccchhHHHhhcCC--eEEEEcCCcccHHHHHHHHHHc----CCCcEEecCCCCCCCCCCCCcceEEeccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAKE--VLTLTVGLKDDLVDLAQVALER----GFPAVVSPLGNRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~~--V~gmDIsp~D~seamlq~A~eR----GL~~i~~~~dt~~LPFpD~SFDlVhcs~c 381 (689)
..++|||||||+|.++..|+..+ |+|+|+|+ +|++.|.++ ++...+...|...++++ ++||+|+|...
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~-----~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~i~~~~~ 110 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQ-----EMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLD 110 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCH-----HHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTT
T ss_pred CCCeEEEEeCcCCHHHHHHHHhCCccEeeccch-----hhhhhccccccccCccceeeccchhhhccc-ccccccceeee
Confidence 45789999999999999998764 88998875 567666554 67777777787788775 79999998655
Q ss_pred ccccc---ccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 382 SITWH---AHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 382 li~W~---~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
.+++. .+...+|.+++|+|+|||.|++....
T Consensus 111 ~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 144 (246)
T d1y8ca_ 111 STNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp GGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred eeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 44443 35667999999999999999987543
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.45 E-value=1.2e-13 Score=132.76 Aligned_cols=99 Identities=14% Similarity=0.046 Sum_probs=72.3
Q ss_pred CCCeEEEECCccchhHHHhhc------CCeEEEEcCCcccHHHHHHHHHHc----CCCcEEecCCCCCCCCCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLA------KEVLTLTVGLKDDLVDLAQVALER----GFPAVVSPLGNRRLPFPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~------~~V~gmDIsp~D~seamlq~A~eR----GL~~i~~~~dt~~LPFpD~SFDlVh 377 (689)
...+|||||||+|.++..|+. ..|+|+|+|+ .|++.|.++ +....+......-++++...||+|+
T Consensus 39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~-----~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~ 113 (225)
T d1im8a_ 39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQ-----PMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVI 113 (225)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCH-----HHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEE
T ss_pred CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCH-----HHHHHHHHHhHhhcccchhhhccchhhccccccceeeE
Confidence 356899999999998877763 2589999875 688888764 3333333223333456667899999
Q ss_pred ecccccccc-ccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 378 CDGCSITWH-AHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 378 cs~cli~W~-~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
|+.++.+.. +++..+|.+|+|+|||||.|++.+.
T Consensus 114 ~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~ 148 (225)
T d1im8a_ 114 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 148 (225)
T ss_dssp EESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EeeeccccChhhHHHHHHHHHHhCCCCceeecccc
Confidence 876553322 4778999999999999999999864
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.43 E-value=2.1e-13 Score=135.30 Aligned_cols=125 Identities=14% Similarity=0.166 Sum_probs=94.8
Q ss_pred CCCeEEEECCccchhHHHhhc---CCeEEEEcCCcccHHHHHHHHHHc--CCCc-EEecCCCCCCCCCCCCcceEEeccc
Q 044932 308 NIRVVLEIGSADLSFVASLLA---KEVLTLTVGLKDDLVDLAQVALER--GFPA-VVSPLGNRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~---~~V~gmDIsp~D~seamlq~A~eR--GL~~-i~~~~dt~~LPFpD~SFDlVhcs~c 381 (689)
...+|||+|||+|.++..|+. ..|+++|+++ .|++.|+++ +.+. .+...+.+.+++++++||+|+|..+
T Consensus 93 ~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~-----~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~v 167 (254)
T d1xtpa_ 93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVK-----HMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWT 167 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCH-----HHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESC
T ss_pred CCCeEEEecccCChhhHHHHhhcCceEEEEcCCH-----HHHHhhhccccccccceeEEccccccccCCCccceEEeecc
Confidence 457899999999999988764 2588998775 688888776 2332 3456677889999999999999887
Q ss_pred cccccccH--HHHHHHHHhccCCCcEEEEEcCCC-------------chhHHHHHHHHHHhcceeEEEeecc
Q 044932 382 SITWHAHG--GKLLLEMNRILRPSGYFILSTKHD-------------SIEEEEALTTLTASICWNILAHKTD 438 (689)
Q Consensus 382 li~W~~d~--~~aL~EI~RVLRPGG~fVIsdp~~-------------~le~~~~ie~La~~l~W~~v~~~~~ 438 (689)
+.| ..++ ..+|.++.|+|+|||+|+|.++.. .......++++++..+|+++....+
T Consensus 168 l~h-l~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~q 238 (254)
T d1xtpa_ 168 AIY-LTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQ 238 (254)
T ss_dssp GGG-SCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEEC
T ss_pred ccc-cchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEee
Confidence 655 4443 578999999999999999986421 1112456889999999988766543
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=3.9e-13 Score=129.91 Aligned_cols=123 Identities=12% Similarity=0.060 Sum_probs=84.9
Q ss_pred CCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHc----CCCc------------------------
Q 044932 308 NIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALER----GFPA------------------------ 356 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eR----GL~~------------------------ 356 (689)
...+|||||||+|.++..++.. .|+|+|+|+. |++.|.++ ....
T Consensus 51 ~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~-----~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (257)
T d2a14a1 51 QGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDR-----NREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEE 125 (257)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHH-----HHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCCEEEEECCCCCHhHHHHhccccCcEEEecCCHH-----HHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHH
Confidence 3568999999999887766643 4899999864 55555443 1110
Q ss_pred --------EE-e--cCCCCCCCCCCCCcceEEecccccccc---ccHHHHHHHHHhccCCCcEEEEEcCCC---------
Q 044932 357 --------VV-S--PLGNRRLPFPSGVFDAIHCDGCSITWH---AHGGKLLLEMNRILRPSGYFILSTKHD--------- 413 (689)
Q Consensus 357 --------i~-~--~~dt~~LPFpD~SFDlVhcs~cli~W~---~d~~~aL~EI~RVLRPGG~fVIsdp~~--------- 413 (689)
.. . ..+....|+++++||+|++..++.+.. .+...+|.++.|+|||||+|++.+...
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~ 205 (257)
T d2a14a1 126 KLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKR 205 (257)
T ss_dssp HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTE
T ss_pred HHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccc
Confidence 00 0 112234578899999999987664432 255689999999999999999987431
Q ss_pred ----chhHHHHHHHHHHhcceeEEEe
Q 044932 414 ----SIEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 414 ----~le~~~~ie~La~~l~W~~v~~ 435 (689)
.....+.+.++++..||+++..
T Consensus 206 ~~~~~~~~~~~~~~~l~~aGf~v~~~ 231 (257)
T d2a14a1 206 EFSCVALEKGEVEQAVLDAGFDIEQL 231 (257)
T ss_dssp EEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred cccccCCCHHHHHHHHHHCCCEEEEE
Confidence 1123456889999999987544
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.40 E-value=2.8e-13 Score=132.75 Aligned_cols=100 Identities=17% Similarity=0.101 Sum_probs=74.7
Q ss_pred CCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHc----CC--CcEEecCCCCCCCC-CCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALER----GF--PAVVSPLGNRRLPF-PSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eR----GL--~~i~~~~dt~~LPF-pD~SFDlVh 377 (689)
...+|||||||+|..+..++.. .|+|+|+|+ .|++.|.+| +. ...+...|+..+++ .+++||+|+
T Consensus 24 ~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~-----~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~ 98 (252)
T d1ri5a_ 24 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAE-----VSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVIS 98 (252)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCH-----HHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEE
T ss_pred CcCEEEEecccCcHHHHHHHHcCCCeEEEecCCH-----HHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEE
Confidence 3578999999999988777643 489999876 577777654 32 23455667666665 468999999
Q ss_pred eccccccccc---cHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 378 CDGCSITWHA---HGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 378 cs~cli~W~~---d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
|..++.+... +...+|.++.|+|||||+|+++.+.
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 99 SQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp EESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence 9865544322 3457999999999999999998875
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.39 E-value=1.5e-13 Score=125.83 Aligned_cols=98 Identities=10% Similarity=-0.083 Sum_probs=70.8
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcC-----------------CCcEEecCCCCCCC-
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERG-----------------FPAVVSPLGNRRLP- 367 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRG-----------------L~~i~~~~dt~~LP- 367 (689)
+..+|||+|||+|.++.+|+.+ .|+|+|+|+ .|++.|.++. ....+...+...++
T Consensus 20 ~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~-----~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 94 (201)
T d1pjza_ 20 PGARVLVPLCGKSQDMSWLSGQGYHVVGAELSE-----AAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA 94 (201)
T ss_dssp TTCEEEETTTCCSHHHHHHHHHCCEEEEEEECH-----HHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH
T ss_pred CCCEEEEecCcCCHHHHHHHHcCCceEeecccH-----HHHHHHHHHhccccchhhhhhhhhccccccceeccccccccc
Confidence 4579999999999999999865 489999875 6888887752 11122233444444
Q ss_pred CCCCCcceEEecccccccc-ccHHHHHHHHHhccCCCcEEEEEc
Q 044932 368 FPSGVFDAIHCDGCSITWH-AHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 368 FpD~SFDlVhcs~cli~W~-~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
++..+||+|++..++.+.. .+...++.++.|+|||||++++..
T Consensus 95 ~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~ 138 (201)
T d1pjza_ 95 RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT 138 (201)
T ss_dssp HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred ccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence 4467899999876554322 235689999999999999988764
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.38 E-value=9.1e-13 Score=132.06 Aligned_cols=133 Identities=14% Similarity=0.125 Sum_probs=92.0
Q ss_pred CCCeEEEECCccchhHHHhhc--CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLA--KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSITW 385 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~--~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W 385 (689)
+..+|||+|||+|.++.+++. ..|+|+|++|... +.+.+.+...++...+...+... ++++++||+|+|....
T Consensus 120 ~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av-~~A~~na~~n~~~~~~~~~d~~~-~~~~~~fD~V~ani~~--- 194 (254)
T d2nxca1 120 PGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVL-PQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYA--- 194 (254)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGH-HHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCH---
T ss_pred ccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHH-HHHHHHHHHcCCceeEEeccccc-cccccccchhhhcccc---
Confidence 357999999999998877664 4599999998644 33344455568777665554322 4667899999985321
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccccCceeEEEEEe
Q 044932 386 HAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEISEMGVKIYQK 450 (689)
Q Consensus 386 ~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqK 450 (689)
.....++.++.|+|||||+|++++... ...+.+.+.++..+|..+....+ +.-..++++|
T Consensus 195 -~~l~~l~~~~~~~LkpGG~lilSgil~--~~~~~v~~~~~~~Gf~~~~~~~~--~~Wv~l~~~r 254 (254)
T d2nxca1 195 -ELHAALAPRYREALVPGGRALLTGILK--DRAPLVREAMAGAGFRPLEEAAE--GEWVLLAYGR 254 (254)
T ss_dssp -HHHHHHHHHHHHHEEEEEEEEEEEEEG--GGHHHHHHHHHHTTCEEEEEEEE--TTEEEEEEEC
T ss_pred -ccHHHHHHHHHHhcCCCcEEEEEecch--hhHHHHHHHHHHCCCEEEEEEEE--CCEEEEEEeC
Confidence 134578899999999999999986432 23345788888999988765432 3333445554
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.36 E-value=8.6e-13 Score=124.54 Aligned_cols=100 Identities=18% Similarity=0.260 Sum_probs=72.5
Q ss_pred CeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcE-EecCCCCCCCCCCCCcceEEecccccccc
Q 044932 310 RVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAV-VSPLGNRRLPFPSGVFDAIHCDGCSITWH 386 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i-~~~~dt~~LPFpD~SFDlVhcs~cli~W~ 386 (689)
.+|||||||+|.++.+|+++ .|+++|+++.... ...+.+.+.++..+ +...+...+++ +++||+|+|..++.+..
T Consensus 32 grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~-~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~ 109 (198)
T d2i6ga1 32 GRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMA-NLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMFLE 109 (198)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGGSC
T ss_pred CcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHH-HHHHHhhhccccchhhhheecccccc-cccccEEEEeeeeecCC
Confidence 48999999999999999876 4889998864221 11222344576643 44556667776 58999999987654432
Q ss_pred -ccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 387 -AHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 387 -~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
.+...+|.++.|+|+|||++++...
T Consensus 110 ~~~~~~~l~~~~~~L~pgG~~~~~~~ 135 (198)
T d2i6ga1 110 AQTIPGLIANMQRCTKPGGYNLIVAA 135 (198)
T ss_dssp TTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 2346899999999999999999753
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.35 E-value=3.6e-12 Score=129.87 Aligned_cols=128 Identities=14% Similarity=0.054 Sum_probs=83.8
Q ss_pred ecCCCCcccchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhc---CCeEEEEcCCcccHHHHHHHHHHcC
Q 044932 277 TFPQNQSEFKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA---KEVLTLTVGLKDDLVDLAQVALERG 353 (689)
Q Consensus 277 ~Fpgggt~F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~---~~V~gmDIsp~D~seamlq~A~eRG 353 (689)
.|+.+..........-++.|.+.+. +. ++.+|||||||.|+++.+++. ..|+|+++|+... ....+.+.+.|
T Consensus 34 ~~~~~~~tL~~Aq~~k~~~~~~~l~-l~---~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~-~~a~~~~~~~~ 108 (291)
T d1kpia_ 34 YFERPDMTLEEAQYAKRKLALDKLN-LE---PGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQY-AHDKAMFDEVD 108 (291)
T ss_dssp CCSSTTCCHHHHHHHHHHHHHHTTC-CC---TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHH-HHHHHHHHHSC
T ss_pred EecCCCCCHHHHHHHHHHHHHHhcC-CC---CCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHH-HHHHHHHHhhc
Confidence 3554443444444444566666554 33 467999999999999988874 3588898876422 11223344457
Q ss_pred CCcEEecCCCCCCCCCCCCcceEEecccccccc--------ccHHHHHHHHHhccCCCcEEEEEc
Q 044932 354 FPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWH--------AHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 354 L~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~--------~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
+...+... ....++++++||.|+|...+.|.. .+...+|++++|+|||||.+++.+
T Consensus 109 l~~~v~~~-~~d~~~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 109 SPRRKEVR-IQGWEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 172 (291)
T ss_dssp CSSCEEEE-ECCGGGCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred cchhhhhh-hhcccccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 66443211 123457789999999876655532 235689999999999999999864
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.33 E-value=5.9e-13 Score=133.08 Aligned_cols=113 Identities=17% Similarity=0.270 Sum_probs=76.4
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHc----CCCc-----EE
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALER----GFPA-----VV 358 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eR----GL~~-----i~ 358 (689)
..|.+.|..+++. . +.++|||+|||+|.++..|+.. .|+|+|+|+ .|++.|.++ +... .+
T Consensus 42 ~~~~~~l~~~l~~-~---~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~-----~ml~~A~~~~~~~~~~~~~~~~~~ 112 (292)
T d1xvaa_ 42 AEYKAWLLGLLRQ-H---GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASD-----KMLKYALKERWNRRKEPAFDKWVI 112 (292)
T ss_dssp HHHHHHHHHHHHH-T---TCCEEEESSCTTSHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHHHHTTTSHHHHTCEE
T ss_pred HHHHHHHHHHhhh-c---CCCEEEEecCCCcHHHHHHHHcCCeeeeccCch-----HHHHHHHHHHHhcccccccceeee
Confidence 3445555555542 1 3578999999999999999876 599999886 566666543 3221 12
Q ss_pred ecCCC----CCCCCCCCCcceEEecccccccc-------ccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 359 SPLGN----RRLPFPSGVFDAIHCDGCSITWH-------AHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 359 ~~~dt----~~LPFpD~SFDlVhcs~cli~W~-------~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
..++. ..+|+. .+||+|+|..+.+++. .+...+|+++.|+|||||+|+|....
T Consensus 113 ~~~~~~~~~~~~~~~-~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 176 (292)
T d1xvaa_ 113 EEANWLTLDKDVPAG-DGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 176 (292)
T ss_dssp EECCGGGHHHHSCCT-TCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred eeccccccccccCCC-CCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence 22221 234444 7899999876544433 23567999999999999999997654
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.31 E-value=4.9e-12 Score=127.79 Aligned_cols=108 Identities=11% Similarity=0.060 Sum_probs=75.2
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhc---CCeEEEEcCCcccHHHHHHHHHH----cCCCcEEe--cC
Q 044932 291 HYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA---KEVLTLTVGLKDDLVDLAQVALE----RGFPAVVS--PL 361 (689)
Q Consensus 291 ~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~---~~V~gmDIsp~D~seamlq~A~e----RGL~~i~~--~~ 361 (689)
.-++.|.+.+. ++ ++.+|||||||+|+++.+++. ..|+|+++++ .|++.|.+ .|+...+. ..
T Consensus 39 ~k~~~~~~~l~-l~---~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~-----~q~~~a~~~~~~~~l~~~~~~~~~ 109 (280)
T d2fk8a1 39 AKVDLNLDKLD-LK---PGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSK-----NQHARCEQVLASIDTNRSRQVLLQ 109 (280)
T ss_dssp HHHHHHHTTSC-CC---TTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCH-----HHHHHHHHHHHTSCCSSCEEEEES
T ss_pred HHHHHHHHHcC-CC---CCCEEEEecCCchHHHHHHHHhCceeEEEecchH-----HHHHHHHHHHHhhccccchhhhhh
Confidence 33455555543 33 467999999999999988774 4589999876 45555544 36654332 22
Q ss_pred CCCCCCCCCCCcceEEecccccccc-ccHHHHHHHHHhccCCCcEEEEEc
Q 044932 362 GNRRLPFPSGVFDAIHCDGCSITWH-AHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 362 dt~~LPFpD~SFDlVhcs~cli~W~-~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
+... + +++||.|++..++.|.. .+...+|+++.|+|||||.++|.+
T Consensus 110 d~~~--~-~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 110 GWED--F-AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp CGGG--C-CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhhh--h-ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 3222 2 47999999887665543 345789999999999999999964
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=1.2e-12 Score=129.47 Aligned_cols=97 Identities=12% Similarity=0.009 Sum_probs=69.6
Q ss_pred CeEEEECCccchhHHHhhcC----------CeEEEEcCCcccHHHHHHHHHHc-----CCCcE---EecCCC------CC
Q 044932 310 RVVLEIGSADLSFVASLLAK----------EVLTLTVGLKDDLVDLAQVALER-----GFPAV---VSPLGN------RR 365 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~~----------~V~gmDIsp~D~seamlq~A~eR-----GL~~i---~~~~dt------~~ 365 (689)
-+|||||||+|.++..|+.. .++++|++ +.|++.|.++ .+... +..... ..
T Consensus 42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s-----~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (280)
T d1jqea_ 42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPS-----AEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRML 116 (280)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCC-----HHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHT
T ss_pred CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCc-----HHHHHHHHHHHhhccccccccccchhhhhhhhcchhc
Confidence 37999999999987766431 24556544 5688887765 22222 222211 13
Q ss_pred CCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 366 LPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 366 LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
.++++++||+|+|..++ +|..++..+|.+++|+|+|||+++|..+.
T Consensus 117 ~~~~~~~fD~I~~~~~l-~~~~d~~~~l~~l~~~LkpgG~l~i~~~~ 162 (280)
T d1jqea_ 117 EKKELQKWDFIHMIQML-YYVKDIPATLKFFHSLLGTNAKMLIIVVS 162 (280)
T ss_dssp TSSSCCCEEEEEEESCG-GGCSCHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ccCCCCceeEEEEccce-ecCCCHHHHHHHHHhhCCCCCEEEEEEec
Confidence 46789999999998765 56789999999999999999999998654
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.28 E-value=1.2e-11 Score=116.96 Aligned_cols=109 Identities=11% Similarity=0.062 Sum_probs=74.6
Q ss_pred HHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH----cCCCc---EEecCCCC
Q 044932 294 ESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE----RGFPA---VVSPLGNR 364 (689)
Q Consensus 294 d~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e----RGL~~---i~~~~dt~ 364 (689)
..|.+.++. . ...+|||+|||+|.++..|+.. .|+++|+++. +++.|.+ .++.. .+...+..
T Consensus 42 ~lLi~~l~~-~---~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~-----~i~~a~~n~~~~~l~~~~i~~~~~d~~ 112 (194)
T d1dusa_ 42 KILVENVVV-D---KDDDILDLGCGYGVIGIALADEVKSTTMADINRR-----AIKLAKENIKLNNLDNYDIRVVHSDLY 112 (194)
T ss_dssp HHHHHHCCC-C---TTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHH-----HHHHHHHHHHHTTCTTSCEEEEECSTT
T ss_pred HHHHHhCCc-C---CCCeEEEEeecCChhHHHHHhhccccceeeeccc-----cchhHHHHHHHhCCccceEEEEEcchh
Confidence 445555542 1 4579999999999999888764 5999999864 4444443 34432 33344443
Q ss_pred CCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 365 RLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 365 ~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
. ++++++||+|+|.............++.++.|+|+|||.+++....
T Consensus 113 ~-~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 159 (194)
T d1dusa_ 113 E-NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp T-TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred h-hhccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEeC
Confidence 3 6778999999986543222222357899999999999999886554
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=1.7e-12 Score=126.13 Aligned_cols=98 Identities=16% Similarity=0.088 Sum_probs=68.8
Q ss_pred CCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcC----CCcEEecCCC--CCCCCCCCCcceEEe
Q 044932 308 NIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERG----FPAVVSPLGN--RRLPFPSGVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRG----L~~i~~~~dt--~~LPFpD~SFDlVhc 378 (689)
.+++|||||||+|.++.+++.. .|+++|++| .+++.|.++. ........+. ...++++++||+|+.
T Consensus 53 ~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~f 127 (229)
T d1zx0a1 53 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECND-----GVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILY 127 (229)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCH-----HHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCH-----HHHHHHHHHhhhcccccccccccccccccccccccccceee
Confidence 3568999999999999988864 488999886 4677776652 2222222222 234678899999874
Q ss_pred c----cccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 379 D----GCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 379 s----~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
- ...+....+...+|.|+.|+|||||+|++..
T Consensus 128 D~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 128 DTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp CCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred cccccccccccccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 2 1122223567889999999999999999864
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=5.6e-12 Score=121.86 Aligned_cols=119 Identities=13% Similarity=-0.029 Sum_probs=81.7
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCC----------------------CcEEecCCC
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGF----------------------PAVVSPLGN 363 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL----------------------~~i~~~~dt 363 (689)
...+|||+|||+|..+.+|++. .|+|+|+|+ .+++.|.++.- ...+.+.|.
T Consensus 45 ~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~-----~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 119 (229)
T d2bzga1 45 SGLRVFFPLCGKAVEMKWFADRGHSVVGVEISE-----LGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSI 119 (229)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTTCEEEEECSCH-----HHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCG
T ss_pred CCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCH-----HHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcch
Confidence 3568999999999999999876 489999876 46766665421 122223343
Q ss_pred CCC-CCCCCCcceEEecccccccc-ccHHHHHHHHHhccCCCcEEEEEcC---------CCchhHHHHHHHHHHhcceeE
Q 044932 364 RRL-PFPSGVFDAIHCDGCSITWH-AHGGKLLLEMNRILRPSGYFILSTK---------HDSIEEEEALTTLTASICWNI 432 (689)
Q Consensus 364 ~~L-PFpD~SFDlVhcs~cli~W~-~d~~~aL~EI~RVLRPGG~fVIsdp---------~~~le~~~~ie~La~~l~W~~ 432 (689)
..+ ++..++||+|+...++.+.. .+...++.++.|+|||||++++... +++.-..+++.++... .|.+
T Consensus 120 ~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~-~~~i 198 (229)
T d2bzga1 120 FDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK-ICNI 198 (229)
T ss_dssp GGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTT-TEEE
T ss_pred hhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcC-CCEE
Confidence 344 46778999999876665543 3557899999999999999887742 1122233457777765 4654
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.22 E-value=3.2e-11 Score=118.44 Aligned_cols=125 Identities=20% Similarity=0.267 Sum_probs=83.4
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCc--EEecCCCCCCCCCCCCcceEEeccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPA--VVSPLGNRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~--i~~~~dt~~LPFpD~SFDlVhcs~c 381 (689)
..++|||||||+|.++..|+.+ .++++|+ |... +...+.+.+.++.. .+...|... +.+ .+||+|++..+
T Consensus 80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~~~~rv~~~~~D~~~-~~~-~~~D~v~~~~v 155 (253)
T d1tw3a2 80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTV-DTARSYLKDEGLSDRVDVVEGDFFE-PLP-RKADAIILSFV 155 (253)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHH-HHHHHHHHHTTCTTTEEEEECCTTS-CCS-SCEEEEEEESC
T ss_pred cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHH-HHHHHHHHHhhcccchhhccccchh-hcc-cchhheeeccc
Confidence 5689999999999999888753 3677786 3222 23333444456543 233344322 334 67999999877
Q ss_pred cccccc-cHHHHHHHHHhccCCCcEEEEEcCCCc-------h----------------hHHHHHHHHHHhcceeEEEee
Q 044932 382 SITWHA-HGGKLLLEMNRILRPSGYFILSTKHDS-------I----------------EEEEALTTLTASICWNILAHK 436 (689)
Q Consensus 382 li~W~~-d~~~aL~EI~RVLRPGG~fVIsdp~~~-------l----------------e~~~~ie~La~~l~W~~v~~~ 436 (689)
+.+|.. +...+|++++|+|||||+|+|.+.... . ...+++..+++..+|+.+...
T Consensus 156 lh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~v~ 234 (253)
T d1tw3a2 156 LLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVR 234 (253)
T ss_dssp GGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred cccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEEEE
Confidence 766643 235789999999999999999864210 0 013567888999999876543
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.21 E-value=4.3e-11 Score=121.45 Aligned_cols=121 Identities=14% Similarity=0.141 Sum_probs=82.4
Q ss_pred cCCCCcccchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhc---CCeEEEEcCCcccHHHHHHHHHH---
Q 044932 278 FPQNQSEFKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA---KEVLTLTVGLKDDLVDLAQVALE--- 351 (689)
Q Consensus 278 Fpgggt~F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~---~~V~gmDIsp~D~seamlq~A~e--- 351 (689)
|+.+..........-++.|.+.+. ++ ++.+|||||||.|+++.+++. ..|+|+++|+. |++.|.+
T Consensus 36 ~~~~~~tL~eAQ~~k~~~~~~~l~-l~---~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~-----Q~~~a~~~~~ 106 (285)
T d1kpga_ 36 FERDDMTLQEAQIAKIDLALGKLG-LQ---PGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKN-----QANHVQQLVA 106 (285)
T ss_dssp CSSTTCCHHHHHHHHHHHHHTTTT-CC---TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHH-----HHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHHcC-CC---CCCEEEEecCcchHHHHHHHhcCCcceEEEeccHH-----HHHHHHHHHH
Confidence 444444444444555666666554 33 458999999999999888774 46899998864 4555444
Q ss_pred -cCCCcE--EecCCCCCCCCCCCCcceEEecccccccc-ccHHHHHHHHHhccCCCcEEEEEc
Q 044932 352 -RGFPAV--VSPLGNRRLPFPSGVFDAIHCDGCSITWH-AHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 352 -RGL~~i--~~~~dt~~LPFpD~SFDlVhcs~cli~W~-~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
.|+... +...|...+ +++||.|++...+.|.. .+...+|.++.|+|||||.+++.+
T Consensus 107 ~~g~~~~v~~~~~d~~~~---~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 107 NSENLRSKRVLLAGWEQF---DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT 166 (285)
T ss_dssp TCCCCSCEEEEESCGGGC---CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhhhhhhhHHHHhhhhcc---cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEE
Confidence 354432 334444444 37899999876655532 456789999999999999999864
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.20 E-value=3.1e-11 Score=118.85 Aligned_cols=124 Identities=11% Similarity=0.068 Sum_probs=83.2
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc----CCCcEEecCCCCCCCCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER----GFPAVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR----GL~~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
++.+|||+|||+|.++..|++. .|+|+|++|. |++.|.++ .....+........+|.+..||++++.
T Consensus 74 pG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~-----~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~ 148 (230)
T d1g8sa_ 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPR-----IMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY 148 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHH-----HHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred CCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHH-----HHHHHHHHHhhhcccceEEEeeccCcccccccceeEEee
Confidence 4579999999999988887752 4999999874 45544443 221222211123345777888877654
Q ss_pred cccccccccHHHHHHHHHhccCCCcEEEEEcCC-------CchhHHHHHHHHHHhcceeEEEeec
Q 044932 380 GCSITWHAHGGKLLLEMNRILRPSGYFILSTKH-------DSIEEEEALTTLTASICWNILAHKT 437 (689)
Q Consensus 380 ~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~-------~~le~~~~ie~La~~l~W~~v~~~~ 437 (689)
+.+++..+...++.++.|+|||||++++.... ......+...+.++..+|+.+...+
T Consensus 149 -~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~id 212 (230)
T d1g8sa_ 149 -EDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVD 212 (230)
T ss_dssp -ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred -ccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEec
Confidence 34455677889999999999999999998532 1112234566777888998875543
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.20 E-value=4.9e-11 Score=115.56 Aligned_cols=100 Identities=14% Similarity=0.219 Sum_probs=74.3
Q ss_pred CeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHcCCCcE-EecCCCCCCC--CCCCCcceEEecccc
Q 044932 310 RVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALERGFPAV-VSPLGNRRLP--FPSGVFDAIHCDGCS 382 (689)
Q Consensus 310 R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eRGL~~i-~~~~dt~~LP--FpD~SFDlVhcs~cl 382 (689)
..|||||||+|.++..|+. ..++|+|+++..+ ....+.+.+.++..+ +...|+..|. |++++||.|++.. -
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i-~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~f-p 108 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVI-VTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF-S 108 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHH-HHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES-C
T ss_pred ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHH-HHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccc-c
Confidence 4799999999999888875 3589999887433 234445566687644 4556666665 8999999998753 3
Q ss_pred ccccccH--------HHHHHHHHhccCCCcEEEEEcC
Q 044932 383 ITWHAHG--------GKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 383 i~W~~d~--------~~aL~EI~RVLRPGG~fVIsdp 411 (689)
.+|.... ..+|.+++|+|||||.|+|.+-
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD 145 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD 145 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEEC
Confidence 4665432 3799999999999999999753
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=4.3e-11 Score=118.51 Aligned_cols=122 Identities=16% Similarity=0.097 Sum_probs=82.5
Q ss_pred CCCeEEEECCccchhHHHhhc---CCeEEEEcCCcccHHHHHHHHHHc--CCCcE-------------------------
Q 044932 308 NIRVVLEIGSADLSFVASLLA---KEVLTLTVGLKDDLVDLAQVALER--GFPAV------------------------- 357 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~---~~V~gmDIsp~D~seamlq~A~eR--GL~~i------------------------- 357 (689)
.+.+|||+|||+|.+...++. ..|+++|+++ .|++.|.++ ..+..
T Consensus 54 ~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~-----~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 128 (263)
T d2g72a1 54 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLE-----VNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKER 128 (263)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCH-----HHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHH
T ss_pred CCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCH-----HHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHH
Confidence 467999999999987654443 2599999886 466655432 10000
Q ss_pred --------EecCCC------CCCCCCCCCcceEEeccccccccc---cHHHHHHHHHhccCCCcEEEEEcCCC-------
Q 044932 358 --------VSPLGN------RRLPFPSGVFDAIHCDGCSITWHA---HGGKLLLEMNRILRPSGYFILSTKHD------- 413 (689)
Q Consensus 358 --------~~~~dt------~~LPFpD~SFDlVhcs~cli~W~~---d~~~aL~EI~RVLRPGG~fVIsdp~~------- 413 (689)
....|. ...+++.++||+|+|..|+.+-+. +...+|.++.|+|||||+|++.+...
T Consensus 129 ~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~ 208 (263)
T d2g72a1 129 QLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAG 208 (263)
T ss_dssp HHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEET
T ss_pred HhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccC
Confidence 001121 223466789999999877644333 45689999999999999999986421
Q ss_pred ------chhHHHHHHHHHHhcceeEEE
Q 044932 414 ------SIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 414 ------~le~~~~ie~La~~l~W~~v~ 434 (689)
+....+.+.++++..|++++.
T Consensus 209 ~~~~~~~~~t~e~v~~~l~~aGf~v~~ 235 (263)
T d2g72a1 209 EARLTVVPVSEEEVREALVRSGYKVRD 235 (263)
T ss_dssp TEEEECCCCCHHHHHHHHHHTTEEEEE
T ss_pred CcccccCCCCHHHHHHHHHHCCCeEEE
Confidence 112446799999999998764
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.16 E-value=1.5e-10 Score=108.83 Aligned_cols=117 Identities=11% Similarity=0.115 Sum_probs=81.2
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCC--cEEecCCCCCCCCCCCCcceEEeccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFP--AVVSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~--~i~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
+..+|||+|||+|.++..|+.. .|+++|+++... ..+.+.+.+.|+. ..+...++..++++..+||+|+|....
T Consensus 33 ~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l-~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~~- 110 (186)
T d1l3ia_ 33 KNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAI-STTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSG- 110 (186)
T ss_dssp TTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHH-HHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCT-
T ss_pred CCCEEEEEECCeEcccccccccceEEEEecCCHHHH-HHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCcc-
Confidence 4679999999999999888865 499999987422 1222223344663 234455666677788999999987533
Q ss_pred cccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhccee
Q 044932 384 TWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWN 431 (689)
Q Consensus 384 ~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~ 431 (689)
.+...++.++.++|||||++++.... .+....+.+.+...+|.
T Consensus 111 ---~~~~~~~~~~~~~LkpgG~lvi~~~~--~e~~~~~~~~l~~~~~~ 153 (186)
T d1l3ia_ 111 ---GELQEILRIIKDKLKPGGRIIVTAIL--LETKFEAMECLRDLGFD 153 (186)
T ss_dssp ---TCHHHHHHHHHHTEEEEEEEEEEECB--HHHHHHHHHHHHHTTCC
T ss_pred ---ccchHHHHHHHHHhCcCCEEEEEeec--cccHHHHHHHHHHcCCC
Confidence 24568999999999999999987653 22223355566666664
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.09 E-value=4.5e-11 Score=115.91 Aligned_cols=101 Identities=16% Similarity=0.098 Sum_probs=65.6
Q ss_pred CCCeEEEECCccchhHHHhhc---C-CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLA---K-EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~---~-~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
++.+|||+|||+|.++.+|++ . .|+|+|++|.++ ....+.|..++ .......+....+.....||.+.+..+.+
T Consensus 56 pg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i-~~a~~~a~~~~-ni~~i~~d~~~~~~~~~~~~~vd~v~~~~ 133 (209)
T d1nt2a_ 56 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPF-EKLLELVRERN-NIIPLLFDASKPWKYSGIVEKVDLIYQDI 133 (209)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHH-HHHHHHHHHCS-SEEEECSCTTCGGGTTTTCCCEEEEEECC
T ss_pred CCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHH-HHHHHHhhccC-CceEEEeeccCccccccccceEEEEEecc
Confidence 457999999999998777764 2 499999998533 22233344443 22233344444444445555554333333
Q ss_pred cccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 384 TWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 384 ~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
+...+...+|.++.|+|||||++++..
T Consensus 134 ~~~~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 134 AQKNQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp CSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cChhhHHHHHHHHHHHhccCCeEEEEE
Confidence 334567789999999999999999975
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.08 E-value=4.6e-10 Score=108.62 Aligned_cols=119 Identities=18% Similarity=0.224 Sum_probs=80.9
Q ss_pred CCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHcCCCcE-EecCCCCCCC--CCCCCcceEEeccc
Q 044932 309 IRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALERGFPAV-VSPLGNRRLP--FPSGVFDAIHCDGC 381 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eRGL~~i-~~~~dt~~LP--FpD~SFDlVhcs~c 381 (689)
...|||||||+|.++..|+. ..++|+|+++..+ ...+..+.+.++..+ +...++..|+ |++.++|.|++..
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v-~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~f- 109 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVL-SYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF- 109 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES-
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHH-HHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccc-
Confidence 35799999999998888874 3589999886422 233444555677643 4455566665 8899999998753
Q ss_pred cccccccH--------HHHHHHHHhccCCCcEEEEEcCC-CchhHHHHHHHHHHhcceeE
Q 044932 382 SITWHAHG--------GKLLLEMNRILRPSGYFILSTKH-DSIEEEEALTTLTASICWNI 432 (689)
Q Consensus 382 li~W~~d~--------~~aL~EI~RVLRPGG~fVIsdp~-~~le~~~~ie~La~~l~W~~ 432 (689)
-.+|.... ..+|.++.|+|||||.|+|.+-. .+.. .+.+.....++..
T Consensus 110 PdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~---~~le~~~~~~~~~ 166 (204)
T d1yzha1 110 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFE---YSLVSFSQYGMKL 166 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHH---HHHHHHHHHTCEE
T ss_pred cccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHH---HHHHHHHHCCccc
Confidence 34665422 47899999999999999987643 3322 2444455555543
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.08 E-value=1.8e-10 Score=114.00 Aligned_cols=125 Identities=14% Similarity=0.241 Sum_probs=83.8
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCcE--EecCCCCCCCCCCCCcceEEeccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPAV--VSPLGNRRLPFPSGVFDAIHCDGC 381 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~i--~~~~dt~~LPFpD~SFDlVhcs~c 381 (689)
..++|||||||+|.++..|+++ .++++|+ |. ..+...+.+.+.++... +...+.. .|+| ..||+|++..+
T Consensus 81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~-~~~~a~~~~~~~~~~~ri~~~~~d~~-~~~p-~~~D~v~~~~v 156 (256)
T d1qzza2 81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AG-PAERARRRFADAGLADRVTVAEGDFF-KPLP-VTADVVLLSFV 156 (256)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HH-HHHHHHHHHHHTTCTTTEEEEECCTT-SCCS-CCEEEEEEESC
T ss_pred cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hH-HHHHHHHHHhhcCCcceeeeeeeecc-cccc-ccchhhhcccc
Confidence 5689999999999999888864 4778886 32 22233333344455432 2233322 2555 56999999888
Q ss_pred cccccc-cHHHHHHHHHhccCCCcEEEEEcCC---Cc-----h----h------------HHHHHHHHHHhcceeEEEee
Q 044932 382 SITWHA-HGGKLLLEMNRILRPSGYFILSTKH---DS-----I----E------------EEEALTTLTASICWNILAHK 436 (689)
Q Consensus 382 li~W~~-d~~~aL~EI~RVLRPGG~fVIsdp~---~~-----l----e------------~~~~ie~La~~l~W~~v~~~ 436 (689)
+.+|.+ +...+|.+++|+|||||+|+|.+.. .. . . ..+++.++++..+|+.+...
T Consensus 157 Lh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~~~~~ 236 (256)
T d1qzza2 157 LLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASER 236 (256)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEE
T ss_pred ccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCceeEEE
Confidence 777653 2357899999999999999998642 00 0 0 12467888999999876543
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.04 E-value=4.3e-10 Score=114.16 Aligned_cols=113 Identities=14% Similarity=0.137 Sum_probs=79.5
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCCCc--EEecCCCC
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGFPA--VVSPLGNR 364 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL~~--i~~~~dt~ 364 (689)
..|.+.|......+ +.++|||||||+|.++..++.. .|+++|.++. ...+.+.+...++.. .+...+..
T Consensus 19 ~~y~~ai~~~~~~~----~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~--~~~a~~~~~~n~~~~~v~~~~~~~~ 92 (316)
T d1oria_ 19 LTYRNSMFHNRHLF----KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI--SDYAVKIVKANKLDHVVTIIKGKVE 92 (316)
T ss_dssp HHHHHHHHTCHHHH----TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT--HHHHHHHHHHTTCTTTEEEEESCTT
T ss_pred HHHHHHHHhccccC----CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH--HhhhhhHHHHhCCccccceEeccHH
Confidence 56777665432211 3578999999999988766653 4999998874 234455566666653 34456778
Q ss_pred CCCCCCCCcceEEecccc--ccccccHHHHHHHHHhccCCCcEEEE
Q 044932 365 RLPFPSGVFDAIHCDGCS--ITWHAHGGKLLLEMNRILRPSGYFIL 408 (689)
Q Consensus 365 ~LPFpD~SFDlVhcs~cl--i~W~~d~~~aL~EI~RVLRPGG~fVI 408 (689)
.++++.++||+|+|.... +.+......++.++.|+|||||.++-
T Consensus 93 ~~~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 93 EVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp TCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred HcccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 899999999999875322 22223567899999999999999864
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.02 E-value=3.3e-10 Score=115.48 Aligned_cols=112 Identities=13% Similarity=0.144 Sum_probs=78.5
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCCCc--EEecCCCC
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGFPA--VVSPLGNR 364 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL~~--i~~~~dt~ 364 (689)
..|.+.|.+.+..+ ...+|||||||+|.++..++.. .|+++|.++. ...+.+.+...++.. .+...+..
T Consensus 24 ~~y~~aI~~~~~~~----~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~--~~~a~~~~~~~~~~~~i~~i~~~~~ 97 (328)
T d1g6q1_ 24 LSYRNAIIQNKDLF----KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSI--IEMAKELVELNGFSDKITLLRGKLE 97 (328)
T ss_dssp HHHHHHHHHHHHHH----TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTH--HHHHHHHHHHTTCTTTEEEEESCTT
T ss_pred HHHHHHHHhccccC----CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHH--HHHHHHHHHHhCccccceEEEeehh
Confidence 46766665543322 3578999999999988777654 4899998862 233445555666543 34456678
Q ss_pred CCCCCCCCcceEEecc--ccccccccHHHHHHHHHhccCCCcEEE
Q 044932 365 RLPFPSGVFDAIHCDG--CSITWHAHGGKLLLEMNRILRPSGYFI 407 (689)
Q Consensus 365 ~LPFpD~SFDlVhcs~--cli~W~~d~~~aL~EI~RVLRPGG~fV 407 (689)
.+++++.+||+|+|.. +.+........++.++.|+|||||.++
T Consensus 98 ~l~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 98 DVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred hccCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 8999999999999853 222323456789999999999999886
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.02 E-value=2.9e-10 Score=114.51 Aligned_cols=113 Identities=20% Similarity=0.209 Sum_probs=80.1
Q ss_pred CCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHc------C-CC-cEEecCCCCCCCCCCCCcc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALER------G-FP-AVVSPLGNRRLPFPSGVFD 374 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eR------G-L~-~i~~~~dt~~LPFpD~SFD 374 (689)
++.+|||+|||+|+++.+|+.. .|+++|+++ .+++.|+++ + .. ..+...|....+|++++||
T Consensus 96 PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~-----~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fD 170 (264)
T d1i9ga_ 96 PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRA-----DHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVD 170 (264)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCH-----HHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEE
T ss_pred CCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCH-----HHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcc
Confidence 4579999999999999888742 489999875 455665542 1 22 2344566677889999999
Q ss_pred eEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeE
Q 044932 375 AIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNI 432 (689)
Q Consensus 375 lVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~ 432 (689)
+|++. .++|..+|.++.|+|||||+|++..|.- -+.+..++.+....+|..
T Consensus 171 aV~ld------lp~P~~~l~~~~~~LkpGG~lv~~~P~i-~Qv~~~~~~l~~~~~f~~ 221 (264)
T d1i9ga_ 171 RAVLD------MLAPWEVLDAVSRLLVAGGVLMVYVATV-TQLSRIVEALRAKQCWTE 221 (264)
T ss_dssp EEEEE------SSCGGGGHHHHHHHEEEEEEEEEEESSH-HHHHHHHHHHHHHSSBCC
T ss_pred eEEEe------cCCHHHHHHHHHhccCCCCEEEEEeCcc-ChHHHHHHHHHHcCCeec
Confidence 99853 2467789999999999999999988752 122233444444556754
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=5e-10 Score=112.99 Aligned_cols=115 Identities=13% Similarity=0.044 Sum_probs=78.3
Q ss_pred hHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCCC--cEEecCC
Q 044932 288 GVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGFP--AVVSPLG 362 (689)
Q Consensus 288 ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL~--~i~~~~d 362 (689)
+...|.+.|.+....+ +..+|||||||+|.++..++.. .|+++|.++.. ..+.+.+.+.+.. ..+...+
T Consensus 19 r~~~y~~ai~~~~~~~----~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~--~~a~~~~~~~~~~~~i~~~~~~ 92 (311)
T d2fyta1 19 RTESYRDFIYQNPHIF----KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEIL--YQAMDIIRLNKLEDTITLIKGK 92 (311)
T ss_dssp HHHHHHHHHHHCGGGT----TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHH--HHHHHHHHHTTCTTTEEEEESC
T ss_pred HHHHHHHHHHhccccC----CcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHH--HHHHHHHHHhCCCccceEEEee
Confidence 3357877776654422 3578999999999988777654 49999998742 2233444455543 3344567
Q ss_pred CCCCCCCCCCcceEEecccccc-cc-ccHHHHHHHHHhccCCCcEEEE
Q 044932 363 NRRLPFPSGVFDAIHCDGCSIT-WH-AHGGKLLLEMNRILRPSGYFIL 408 (689)
Q Consensus 363 t~~LPFpD~SFDlVhcs~cli~-W~-~d~~~aL~EI~RVLRPGG~fVI 408 (689)
...+++++.+||+|+|...... +. .....++...+|+|||||+++-
T Consensus 93 ~~~l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 93 IEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp TTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred HHHhcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 7889999999999998522111 11 2345777788999999999874
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=98.96 E-value=2.3e-10 Score=110.79 Aligned_cols=91 Identities=18% Similarity=0.046 Sum_probs=64.2
Q ss_pred CCCeEEEECCccchhHHHhhc---C--CeEEEEcCCcccHHHHHHHHHH----cCCCcE-EecCCCCCCCCCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLA---K--EVLTLTVGLKDDLVDLAQVALE----RGFPAV-VSPLGNRRLPFPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~---~--~V~gmDIsp~D~seamlq~A~e----RGL~~i-~~~~dt~~LPFpD~SFDlVh 377 (689)
+..+|||||||+|.+++.|+. . .|+++|+++. +++.|.+ .++... +...+....++.+++||+|+
T Consensus 75 ~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~-----~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~ 149 (213)
T d1dl5a1 75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRK-----ICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIF 149 (213)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHH-----HHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEE
T ss_pred ccceEEEecCccchhHHHHHHHhCCCCcEEEeecchh-----hHHHhhhhHhhhcccccccccCchHHccccccchhhhh
Confidence 457999999999998877753 2 4899998764 4444444 355443 33445566677778999999
Q ss_pred eccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
|.... ++. ..++.++|||||++++..
T Consensus 150 ~~~~~-~~~------p~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 150 VTVGV-DEV------PETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp ECSBB-SCC------CHHHHHHEEEEEEEEEEB
T ss_pred hhccH-HHh------HHHHHHhcCCCcEEEEEE
Confidence 87543 322 246788999999998854
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=98.93 E-value=1.1e-09 Score=109.48 Aligned_cols=111 Identities=11% Similarity=0.118 Sum_probs=76.5
Q ss_pred CCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHc-----CCCc-EEecCCCCCCCCCCCCcceE
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALER-----GFPA-VVSPLGNRRLPFPSGVFDAI 376 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eR-----GL~~-i~~~~dt~~LPFpD~SFDlV 376 (689)
++.+|||+|||+|.++.+|+.. .|+++|+++ .+++.|.++ +... .+...|.... +++.+||+|
T Consensus 85 pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e-----~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~fD~V 158 (250)
T d1yb2a1 85 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDE-----DNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMYDAV 158 (250)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCH-----HHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCEEEE
T ss_pred CcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCH-----HHHHHHHHHHHHhcCCCceEEEEeeeecc-cccceeeee
Confidence 4579999999999988877642 488998875 466666653 2222 3344444333 678999999
Q ss_pred EeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeE
Q 044932 377 HCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNI 432 (689)
Q Consensus 377 hcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~ 432 (689)
++. ..++..+|.++.|+|||||+|++..|. .+....+.+.++..+|..
T Consensus 159 ~ld------~p~p~~~l~~~~~~LKpGG~lv~~~P~--i~Qv~~~~~~l~~~gf~~ 206 (250)
T d1yb2a1 159 IAD------IPDPWNHVQKIASMMKPGSVATFYLPN--FDQSEKTVLSLSASGMHH 206 (250)
T ss_dssp EEC------CSCGGGSHHHHHHTEEEEEEEEEEESS--HHHHHHHHHHSGGGTEEE
T ss_pred eec------CCchHHHHHHHHHhcCCCceEEEEeCC--cChHHHHHHHHHHCCCce
Confidence 863 235568999999999999999998775 222233444555567754
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=5.4e-10 Score=114.63 Aligned_cols=101 Identities=10% Similarity=-0.017 Sum_probs=68.0
Q ss_pred CCCeEEEECCccchhHHHhhc---C-CeEEEEcCCcccHH--HHHHHHHHc----CC---CcEEecCCCCCCCCCCCCcc
Q 044932 308 NIRVVLEIGSADLSFVASLLA---K-EVLTLTVGLKDDLV--DLAQVALER----GF---PAVVSPLGNRRLPFPSGVFD 374 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~---~-~V~gmDIsp~D~se--amlq~A~eR----GL---~~i~~~~dt~~LPFpD~SFD 374 (689)
...+|||+|||+|.++..++. . .++|+|+++..... .+++.+..+ |+ ...+...|...+||.+..||
T Consensus 151 ~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~~~ 230 (328)
T d1nw3a_ 151 DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIAN 230 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccccccccCc
Confidence 457999999999998765542 2 48999998753321 122222111 22 23455667778888877775
Q ss_pred --eEEeccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 375 --AIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 375 --lVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
+|++ .+..+ .++...+|.|+.|+|||||.+++..
T Consensus 231 advi~~-~~~~f-~~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 231 TSVIFV-NNFAF-GPEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp CSEEEE-CCTTT-CHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred ceEEEE-cceec-chHHHHHHHHHHHhCCCCcEEEEec
Confidence 4544 33333 4577789999999999999998765
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=98.86 E-value=2.5e-09 Score=107.37 Aligned_cols=113 Identities=13% Similarity=0.103 Sum_probs=76.8
Q ss_pred CCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHH----cCCCcEE-ecCCCCCCCCCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALE----RGFPAVV-SPLGNRRLPFPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~e----RGL~~i~-~~~dt~~LPFpD~SFDlVh 377 (689)
++.+|||+|||+|.++.+|+.. .|+++|+++. +++.|.+ .++...+ .....-..+|+...||.|+
T Consensus 103 pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~-----~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D~V~ 177 (266)
T d1o54a_ 103 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREE-----FAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALF 177 (266)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHH-----HHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHH-----HHHHHHHHHHHhccccCcEEEeccccccccccceeeeE
Confidence 4579999999999988887642 4899998863 4455443 3553222 2222123457778999987
Q ss_pred eccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEE
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v 433 (689)
.. .+++..+|.++.|+|||||+|++..|. .+....+.+.++..+|..+
T Consensus 178 ~d------~p~p~~~l~~~~~~LKpGG~lv~~~P~--~~Qv~~~~~~l~~~gF~~i 225 (266)
T d1o54a_ 178 LD------VPDPWNYIDKCWEALKGGGRFATVCPT--TNQVQETLKKLQELPFIRI 225 (266)
T ss_dssp EC------CSCGGGTHHHHHHHEEEEEEEEEEESS--HHHHHHHHHHHHHSSEEEE
T ss_pred ec------CCCHHHHHHHHHhhcCCCCEEEEEeCc--ccHHHHHHHHHHHCCceeE
Confidence 42 246678999999999999999998874 3332345555666788643
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.84 E-value=9.6e-09 Score=100.86 Aligned_cols=138 Identities=12% Similarity=0.102 Sum_probs=81.6
Q ss_pred CCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHcCC-CcEEecCC-CCCCCCCCCCcceEEecc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALERGF-PAVVSPLG-NRRLPFPSGVFDAIHCDG 380 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eRGL-~~i~~~~d-t~~LPFpD~SFDlVhcs~ 380 (689)
++.+|||+|||+|.++.+|++. .|+++|+++... ......|..++. ..+..... ....++....||+|++.
T Consensus 73 pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l-~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d- 150 (227)
T d1g8aa_ 73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVL-RELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED- 150 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC-
T ss_pred CCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHH-HHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEE-
Confidence 4679999999999999888742 499999987432 122222222332 12222221 12334455789988764
Q ss_pred ccccccccHHHHHHHHHhccCCCcEEEEEcCCCc-------hhHHHHHHHHHHhcceeEEEeecc-ccCce-eEEEEEe
Q 044932 381 CSITWHAHGGKLLLEMNRILRPSGYFILSTKHDS-------IEEEEALTTLTASICWNILAHKTD-EISEM-GVKIYQK 450 (689)
Q Consensus 381 cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~-------le~~~~ie~La~~l~W~~v~~~~~-~~g~~-~i~IwqK 450 (689)
++...+...++.++.|+|||||+++|+..... .....+++.+.+ -+|+.+...+. ..... ++.+.||
T Consensus 151 --~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~-~gf~iie~i~L~p~~~~H~~vv~rK 226 (227)
T d1g8aa_ 151 --VAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELS-EYFEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp --CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHH-TTSEEEEEEECTTTSSSEEEEEEEC
T ss_pred --ccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHH-cCCEEEEEEcCCCCCCceEEEEEEe
Confidence 23345667899999999999999999742211 111233444444 37877644321 12222 4666666
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=1.6e-09 Score=105.82 Aligned_cols=92 Identities=17% Similarity=0.167 Sum_probs=63.5
Q ss_pred CCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHH----cCC------CcEEecCCCCCCCCCCCC
Q 044932 308 NIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALE----RGF------PAVVSPLGNRRLPFPSGV 372 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~e----RGL------~~i~~~~dt~~LPFpD~S 372 (689)
++.+|||||||+|.+++.|+. ..|+++|+++. +++.|.+ .++ ...+...|....+++++.
T Consensus 76 ~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~-----l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~ 150 (224)
T d1i1na_ 76 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKE-----LVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAP 150 (224)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHH-----HHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCC
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHH-----HHHHHHHhccccCcccccccceEEEEeecccccchhhh
Confidence 457999999999988766653 25999998764 4444432 222 122344566677778899
Q ss_pred cceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 373 FDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 373 FDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
||.|++.... +. +..++.+.|||||++++-..
T Consensus 151 fD~I~~~~~~-~~------ip~~l~~~LkpGG~LV~pv~ 182 (224)
T d1i1na_ 151 YDAIHVGAAA-PV------VPQALIDQLKPGGRLILPVG 182 (224)
T ss_dssp EEEEEECSBB-SS------CCHHHHHTEEEEEEEEEEES
T ss_pred hhhhhhhcch-hh------cCHHHHhhcCCCcEEEEEEc
Confidence 9999987543 31 23468899999999998543
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=8.4e-09 Score=106.35 Aligned_cols=114 Identities=19% Similarity=0.157 Sum_probs=68.4
Q ss_pred CCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHc--------------CCC--cEEecCCCCCC
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALER--------------GFP--AVVSPLGNRRL 366 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eR--------------GL~--~i~~~~dt~~L 366 (689)
++.+|||+|||+|+++.+|+.. .|+++|+++ .+++.|+++ +.. ..+...+....
T Consensus 98 pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~-----~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~ 172 (324)
T d2b25a1 98 PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRK-----DHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA 172 (324)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSH-----HHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCC
T ss_pred CCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCH-----HHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhc
Confidence 4579999999999998888742 499999876 345554432 111 12222333222
Q ss_pred --CCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhH-HHHHHHHH-HhcceeEEE
Q 044932 367 --PFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEE-EEALTTLT-ASICWNILA 434 (689)
Q Consensus 367 --PFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~-~~~ie~La-~~l~W~~v~ 434 (689)
.+++.+||.|+.- + ++|..+|.++.|+|||||+|++..|. +.. +..++.|- ..++|..+.
T Consensus 173 ~~~~~~~~fD~V~LD---~---p~P~~~l~~~~~~LKpGG~lv~~~P~--i~Qv~~~~~~l~~~~~~f~~i~ 236 (324)
T d2b25a1 173 TEDIKSLTFDAVALD---M---LNPHVTLPVFYPHLKHGGVCAVYVVN--ITQVIELLDGIRTCELALSCEK 236 (324)
T ss_dssp C-------EEEEEEC---S---SSTTTTHHHHGGGEEEEEEEEEEESS--HHHHHHHHHHHHHHTCCEEEEE
T ss_pred ccccCCCCcceEeec---C---cCHHHHHHHHHHhccCCCEEEEEeCC--HHHHHHHHHHHHHcCCCceeeE
Confidence 3567899999853 1 24557999999999999999998764 222 22233332 245786653
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.65 E-value=1.1e-08 Score=108.70 Aligned_cols=97 Identities=9% Similarity=-0.021 Sum_probs=60.5
Q ss_pred CCCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHc-----------CCC---cEEe-cCCCCCCCC
Q 044932 308 NIRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALER-----------GFP---AVVS-PLGNRRLPF 368 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~eR-----------GL~---~i~~-~~dt~~LPF 368 (689)
+..+|||||||+|.++..++. ..|+|+|+++. |++.|.++ +.. ..+. ..+....++
T Consensus 216 pgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~-----~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~ 290 (406)
T d1u2za_ 216 KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDD-----ASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNR 290 (406)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHH-----HHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHH
T ss_pred CCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHH-----HHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccc
Confidence 457999999999998766653 25999999874 44444332 111 1111 111111121
Q ss_pred CC---CCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 369 PS---GVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 369 pD---~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
.+ ..+|+|++. +. .+.++...+|.|+.|+|||||+|+.+.+
T Consensus 291 ~d~~~~~adVV~in-n~-~f~~~l~~~L~ei~r~LKPGGrIVs~~~ 334 (406)
T d1u2za_ 291 VAELIPQCDVILVN-NF-LFDEDLNKKVEKILQTAKVGCKIISLKS 334 (406)
T ss_dssp HHHHGGGCSEEEEC-CT-TCCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred cccccccceEEEEe-cc-cCchHHHHHHHHHHHhcCCCcEEEEecc
Confidence 11 245667653 33 2356778999999999999999988753
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.58 E-value=2.8e-08 Score=97.43 Aligned_cols=90 Identities=17% Similarity=0.112 Sum_probs=59.4
Q ss_pred CCCeEEEECCccchhHHHhhc--CCeEEEEcCCcccHHHHHHHHHHc--CCC-cEEecCCCCCCCCCCCCcceEEecccc
Q 044932 308 NIRVVLEIGSADLSFVASLLA--KEVLTLTVGLKDDLVDLAQVALER--GFP-AVVSPLGNRRLPFPSGVFDAIHCDGCS 382 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~--~~V~gmDIsp~D~seamlq~A~eR--GL~-~i~~~~dt~~LPFpD~SFDlVhcs~cl 382 (689)
+..+|||||||+|.+++.|+. ..|+++++++ .++..|.++ ... ..+...+........+.||.|++..+.
T Consensus 70 ~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~-----~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~ 144 (224)
T d1vbfa_ 70 KGQKVLEIGTGIGYYTALIAEIVDKVVSVEINE-----KMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATA 144 (224)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCH-----HHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBB
T ss_pred ccceEEEecCCCCHHHHHHHHHhcccccccccH-----HHHHHHHHHHhcccccccccCchhhcchhhhhHHHHHhhcch
Confidence 457999999999999887764 3589999876 345555443 222 233334433322345789999987543
Q ss_pred ccccccHHHHHHHHHhccCCCcEEEEE
Q 044932 383 ITWHAHGGKLLLEMNRILRPSGYFILS 409 (689)
Q Consensus 383 i~W~~d~~~aL~EI~RVLRPGG~fVIs 409 (689)
+. +...+.+.|+|||++++-
T Consensus 145 -~~------ip~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 145 -PT------LLCKPYEQLKEGGIMILP 164 (224)
T ss_dssp -SS------CCHHHHHTEEEEEEEEEE
T ss_pred -hh------hhHHHHHhcCCCCEEEEE
Confidence 31 234566889999999884
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.56 E-value=1.8e-07 Score=94.30 Aligned_cols=131 Identities=11% Similarity=0.077 Sum_probs=82.7
Q ss_pred CCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHH----HcCCCc-EEecCCCCCCCCCCCCcceEEec
Q 044932 309 IRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVAL----ERGFPA-VVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~----eRGL~~-i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
..+|||+|||+|..+..|+. ..|+++|+++. +++.|. ..++.. .+...|. --++++..||+|+|.
T Consensus 109 ~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~-----Al~~A~~Na~~~~~~~v~~~~~d~-~~~~~~~~fDlIvsN 182 (274)
T d2b3ta1 109 PCRILDLGTGTGAIALALASERPDCEIIAVDRMPD-----AVSLAQRNAQHLAIKNIHILQSDW-FSALAGQQFAMIVSN 182 (274)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHH-----HHHHHHHHHHHHTCCSEEEECCST-TGGGTTCCEEEEEEC
T ss_pred ccceeeeehhhhHHHHHHHhhCCcceeeeccchhH-----HHhHHHHHHHHhCcccceeeeccc-ccccCCCceeEEEec
Confidence 46799999999998877763 35999999874 444443 346643 3333332 224667899999985
Q ss_pred ccccc------------ccc------------cHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEe
Q 044932 380 GCSIT------------WHA------------HGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAH 435 (689)
Q Consensus 380 ~cli~------------W~~------------d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~ 435 (689)
--.++ +.+ ....++.+..+.|+|||.+++-...... ..+.+++...+|..+..
T Consensus 183 PPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~---~~v~~~l~~~gf~~i~~ 259 (274)
T d2b3ta1 183 PPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQG---EAVRQAFILAGYHDVET 259 (274)
T ss_dssp CCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCH---HHHHHHHHHTTCTTCCE
T ss_pred chhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHH---HHHHHHHHHCCCCeEEE
Confidence 21111 110 0135778899999999999997554332 34778888889975533
Q ss_pred eccccCceeEEEE
Q 044932 436 KTDEISEMGVKIY 448 (689)
Q Consensus 436 ~~~~~g~~~i~Iw 448 (689)
..+-.|...+.+.
T Consensus 260 ~kDl~g~~R~v~~ 272 (274)
T d2b3ta1 260 CRDYGDNERVTLG 272 (274)
T ss_dssp EECTTSSEEEEEE
T ss_pred EECCCCCceEEEE
Confidence 3333344444443
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.46 E-value=5.3e-07 Score=89.71 Aligned_cols=146 Identities=9% Similarity=0.046 Sum_probs=91.3
Q ss_pred eeecCCCCcccchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhc---CCeEEEEcCCcccHHHHHHHHHH
Q 044932 275 YLTFPQNQSEFKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA---KEVLTLTVGLKDDLVDLAQVALE 351 (689)
Q Consensus 275 ~~~Fpgggt~F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~---~~V~gmDIsp~D~seamlq~A~e 351 (689)
.+.|.-..++|..+.......|...+. .+.+|||+|||+|.|+..++. ..|+++|++|... ..+.+-+..
T Consensus 80 ~~~~d~~~~~f~~~~~~er~ri~~~~~------~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~-~~~~~N~~~ 152 (260)
T d2frna1 80 KYKLDVAKIMFSPANVKERVRMAKVAK------PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTF-KFLVENIHL 152 (260)
T ss_dssp EEEEETTTSCCCGGGHHHHHHHHHHCC------TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHH-HHHHHHHHH
T ss_pred eEEeccccccEecCCHHHHHHHHhhcC------CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHH-HHHHHHHHH
Confidence 344444456777766544445555432 357999999999999876663 3599999988422 222333444
Q ss_pred cCCCc--EEecCCCCCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC--C--chhHHHHHHHHH
Q 044932 352 RGFPA--VVSPLGNRRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH--D--SIEEEEALTTLT 425 (689)
Q Consensus 352 RGL~~--i~~~~dt~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~--~--~le~~~~ie~La 425 (689)
.|+.. .+...|+..++. .+.||.|++.. .+ ....+|.+..++|+|||++.+-.-. . .....+.+.+++
T Consensus 153 n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~--p~---~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~ 226 (260)
T d2frna1 153 NKVEDRMSAYNMDNRDFPG-ENIADRILMGY--VV---RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRIT 226 (260)
T ss_dssp TTCTTTEEEECSCTTTCCC-CSCEEEEEECC--CS---SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHH
T ss_pred hCCCceEEEEEcchHHhcc-CCCCCEEEECC--CC---chHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHH
Confidence 56654 344566666544 47899998642 11 2346788899999999998764321 1 111234467778
Q ss_pred HhcceeEE
Q 044932 426 ASICWNIL 433 (689)
Q Consensus 426 ~~l~W~~v 433 (689)
...++.+.
T Consensus 227 ~~~g~~v~ 234 (260)
T d2frna1 227 KEYGYDVE 234 (260)
T ss_dssp HHTTCEEE
T ss_pred HHcCCceE
Confidence 88888664
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.40 E-value=1.9e-07 Score=95.31 Aligned_cols=126 Identities=12% Similarity=0.042 Sum_probs=76.1
Q ss_pred cccchhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCCCc--E
Q 044932 283 SEFKGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGFPA--V 357 (689)
Q Consensus 283 t~F~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL~~--i 357 (689)
+.|.-........+..++. ...+|||+|||+|.++.+++.. .|+++|+++... +...+.+...|+.. .
T Consensus 126 tG~flDqr~~r~~~~~~~~------~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al-~~a~~N~~~ngl~~~~~ 198 (324)
T d2as0a2 126 TGFFLDQRENRLALEKWVQ------PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAI-ETAKENAKLNGVEDRMK 198 (324)
T ss_dssp SCCCSTTHHHHHHHGGGCC------TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCGGGEE
T ss_pred cCcccchhhHHHHHHhhcC------CCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHH-HHHHHHHHHcCCCccce
Confidence 3444444544555655442 3579999999999999877643 499999987422 12222333456643 2
Q ss_pred EecCCC----CCCCCCCCCcceEEecc-ccccccc-------cHHHHHHHHHhccCCCcEEEEEcCCCch
Q 044932 358 VSPLGN----RRLPFPSGVFDAIHCDG-CSITWHA-------HGGKLLLEMNRILRPSGYFILSTKHDSI 415 (689)
Q Consensus 358 ~~~~dt----~~LPFpD~SFDlVhcs~-cli~W~~-------d~~~aL~EI~RVLRPGG~fVIsdp~~~l 415 (689)
+...|. ..++.....||+|++.- +...-.. +-..++....++|+|||+|+++.-...+
T Consensus 199 ~~~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~ 268 (324)
T d2as0a2 199 FIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHV 268 (324)
T ss_dssp EEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTS
T ss_pred eeechhhhhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccC
Confidence 333332 12344568999999742 1111000 1235778889999999999998755433
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.36 E-value=1.1e-06 Score=86.64 Aligned_cols=117 Identities=14% Similarity=0.195 Sum_probs=77.1
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCc-EEecCCCCCCCCCCCCcceEEecccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPA-VVSPLGNRRLPFPSGVFDAIHCDGCS 382 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~-i~~~~dt~~LPFpD~SFDlVhcs~cl 382 (689)
..++|||||||+|.++..++.+ .++++|+- ..++.+. .... .+...|. --|.| ..|++++..++
T Consensus 81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp------~vi~~~~--~~~ri~~~~gd~-~~~~p--~~D~~~l~~vL 149 (244)
T d1fp1d2 81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDLP------QVIENAP--PLSGIEHVGGDM-FASVP--QGDAMILKAVC 149 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH------HHHTTCC--CCTTEEEEECCT-TTCCC--CEEEEEEESSG
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecch------hhhhccC--CCCCeEEecCCc-ccccc--cceEEEEehhh
Confidence 5789999999999999888754 46777752 2222111 1111 1222232 12455 45999998888
Q ss_pred ccccc-cHHHHHHHHHhccCCCcEEEEEcCC-----C-c--------hh------------HHHHHHHHHHhcceeEEEe
Q 044932 383 ITWHA-HGGKLLLEMNRILRPSGYFILSTKH-----D-S--------IE------------EEEALTTLTASICWNILAH 435 (689)
Q Consensus 383 i~W~~-d~~~aL~EI~RVLRPGG~fVIsdp~-----~-~--------le------------~~~~ie~La~~l~W~~v~~ 435 (689)
++|.+ +-..+|+.+++.|+|||.++|.+.. . . +. ..+++.++++..+|+.+..
T Consensus 150 h~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v~v 229 (244)
T d1fp1d2 150 HNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQV 229 (244)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEE
T ss_pred hhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCceEE
Confidence 77764 3457899999999999999998631 0 0 00 1356788999999987643
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.35 E-value=2.2e-07 Score=90.66 Aligned_cols=91 Identities=15% Similarity=0.201 Sum_probs=59.9
Q ss_pred CCCeEEEECCccchhHHHhhcC----------CeEEEEcCCcccHHHHHHHHHHc---------CC-CcEEecCCCCCCC
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----------EVLTLTVGLKDDLVDLAQVALER---------GF-PAVVSPLGNRRLP 367 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----------~V~gmDIsp~D~seamlq~A~eR---------GL-~~i~~~~dt~~LP 367 (689)
+..+|||||||+|.+++.|+.. .|+++++.+. ++..|.++ ++ ...+...|.....
T Consensus 80 ~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~-----l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~ 154 (223)
T d1r18a_ 80 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAE-----LVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGY 154 (223)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHH-----HHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCC
T ss_pred CCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHH-----HHHHHHHhhhhcchhhcCccEEEEEeccccccc
Confidence 3579999999999988776532 4889988753 44444322 22 2233345555555
Q ss_pred CCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 368 FPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 368 FpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
.+.+.||.|++.... + .+-..+.+.|+|||++++-.
T Consensus 155 ~~~~~fD~Iiv~~a~-~------~~p~~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 155 PPNAPYNAIHVGAAA-P------DTPTELINQLASGGRLIVPV 190 (223)
T ss_dssp GGGCSEEEEEECSCB-S------SCCHHHHHTEEEEEEEEEEE
T ss_pred ccccceeeEEEEeec-h------hchHHHHHhcCCCcEEEEEE
Confidence 566899999987543 3 11235678999999998854
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.32 E-value=5.2e-07 Score=85.51 Aligned_cols=46 Identities=24% Similarity=0.471 Sum_probs=36.4
Q ss_pred CCCCCcceEEecccccccccc-HHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 368 FPSGVFDAIHCDGCSITWHAH-GGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 368 FpD~SFDlVhcs~cli~W~~d-~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
.+.+.||+|+|..+++.+... ...+|..+++.|+|||+|++.....
T Consensus 128 ~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~sE~ 174 (193)
T d1af7a2 128 NVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSEN 174 (193)
T ss_dssp CCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTTCC
T ss_pred CCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEecCcc
Confidence 345889999998877765432 3689999999999999999886543
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.27 E-value=2.3e-07 Score=94.66 Aligned_cols=103 Identities=18% Similarity=0.122 Sum_probs=65.9
Q ss_pred CCeEEEECCccchhHHHhhc--CCeEEEEcCCcccHHHHHHHHHHcCCCcE-EecCCC----CCCCCCCCCcceEEecc-
Q 044932 309 IRVVLEIGSADLSFVASLLA--KEVLTLTVGLKDDLVDLAQVALERGFPAV-VSPLGN----RRLPFPSGVFDAIHCDG- 380 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~--~~V~gmDIsp~D~seamlq~A~eRGL~~i-~~~~dt----~~LPFpD~SFDlVhcs~- 380 (689)
+.+|||++||+|+|+.+++. ..|+++|+++... ..+.+.+...|+... +...+. ..++....+||+|++.-
T Consensus 146 g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al-~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP 224 (318)
T d1wxxa2 146 GERALDVFSYAGGFALHLALGFREVVAVDSSAEAL-RRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP 224 (318)
T ss_dssp EEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHH-HHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHH-HHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcCC
Confidence 47899999999999988763 3599999887422 122223334576532 333443 22344567999999731
Q ss_pred cccc-------ccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 381 CSIT-------WHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 381 cli~-------W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+... -..+...++..+.++|||||.+++++-.
T Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs 263 (318)
T d1wxxa2 225 AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 263 (318)
T ss_dssp CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 1110 0112235788899999999999998654
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.25 E-value=1.3e-06 Score=81.24 Aligned_cols=96 Identities=11% Similarity=0.104 Sum_probs=61.3
Q ss_pred CCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHH----HHcCCCcEEecCCCC----CCCCCCCCcceEEe
Q 044932 309 IRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVA----LERGFPAVVSPLGNR----RLPFPSGVFDAIHC 378 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A----~eRGL~~i~~~~dt~----~LPFpD~SFDlVhc 378 (689)
..+|||+|||+|.++...+.+ .|+++|+++. +++.| ...++...+...+.. .+.....+||+|++
T Consensus 42 g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~-----a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~ 116 (171)
T d1ws6a1 42 RGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPE-----AVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM 116 (171)
T ss_dssp CCEEEEETCSSCHHHHHHHHTTCEEEEECCCHH-----HHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEeccccchhhhhhhhccchhhhcccCHH-----HHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEE
Confidence 468999999999998776654 4778887763 34333 334666554433321 12345678999987
Q ss_pred ccccccccccHHHHHHHH--HhccCCCcEEEEEcCC
Q 044932 379 DGCSITWHAHGGKLLLEM--NRILRPSGYFILSTKH 412 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI--~RVLRPGG~fVIsdp~ 412 (689)
.- ||..+....+.++ ..+|+|||++++..+.
T Consensus 117 DP---PY~~~~~~~l~~l~~~~ll~~~g~ivie~~~ 149 (171)
T d1ws6a1 117 AP---PYAMDLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp CC---CTTSCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred cc---ccccCHHHHHHHHHHcCCcCCCeEEEEEecC
Confidence 42 2333333445544 3589999999987654
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.16 E-value=1.1e-06 Score=85.32 Aligned_cols=95 Identities=16% Similarity=0.032 Sum_probs=60.2
Q ss_pred CCCeEEEECCccchhHHHhh---cCCeEEEEcCCcccHHHHHHHHHHcCCCcE-EecCCCCCCCCCCCCcceEEeccccc
Q 044932 308 NIRVVLEIGSADLSFVASLL---AKEVLTLTVGLKDDLVDLAQVALERGFPAV-VSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La---~~~V~gmDIsp~D~seamlq~A~eRGL~~i-~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
+..+|||||||+|.+++.|+ +..|+++++.+... ..+.+...+.|+... +...|........+.||.|++....
T Consensus 78 ~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~-~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a~- 155 (215)
T d1jg1a_ 78 PGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELV-EFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGA- 155 (215)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHH-HHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBB-
T ss_pred ccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHH-HHHHHHHHHcCCceeEEEECccccCCcccCcceeEEeeccc-
Confidence 35789999999999887655 44599999876321 222233333465543 4445544444456889999986433
Q ss_pred cccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 384 TWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 384 ~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
+.. +. .+...|+|||++++-.
T Consensus 156 ~~i--p~----~l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 156 PKI--PE----PLIEQLKIGGKLIIPV 176 (215)
T ss_dssp SSC--CH----HHHHTEEEEEEEEEEE
T ss_pred ccC--CH----HHHHhcCCCCEEEEEE
Confidence 311 22 2456799999998753
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.00 E-value=3.3e-05 Score=73.44 Aligned_cols=114 Identities=15% Similarity=0.054 Sum_probs=64.0
Q ss_pred CCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHc----CCCcEEecCCCCCCCCCCCCcceEEecc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALER----GFPAVVSPLGNRRLPFPSGVFDAIHCDG 380 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eR----GL~~i~~~~dt~~LPFpD~SFDlVhcs~ 380 (689)
.+.+|||+|||+|.++..++.+ .|+++|+++ .++..|.+. ++...+...+... + +..||+|++.-
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~-----~~~~~a~~N~~~~~~~~~~~~~d~~~--~-~~~fD~Vi~nP 117 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDK-----EAVDVLIENLGEFKGKFKVFIGDVSE--F-NSRVDIVIMNP 117 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCH-----HHHHHHHHHTGGGTTSEEEEESCGGG--C-CCCCSEEEECC
T ss_pred CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcH-----HHHHHHHHHHHHcCCCceEEECchhh--h-CCcCcEEEEcC
Confidence 3578999999999988655543 489999986 355555543 5555555555444 3 46899999752
Q ss_pred ccc--cccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEE
Q 044932 381 CSI--TWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 381 cli--~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~ 434 (689)
-.. .-+.+. ..+ .+.+.+++.++...... ......++.++...+|....
T Consensus 118 P~~~~~~~~d~-~~l---~~~~~~~~~v~~ih~~~-~~~~~~i~~~~~~~g~~i~~ 168 (201)
T d1wy7a1 118 PFGSQRKHADR-PFL---LKAFEISDVVYSIHLAK-PEVRRFIEKFSWEHGFVVTH 168 (201)
T ss_dssp CCSSSSTTTTH-HHH---HHHHHHCSEEEEEEECC-HHHHHHHHHHHHHTTEEEEE
T ss_pred ccccccccccH-HHH---HHHHhhcccchhcccch-HHHHHHHHHHHhhcCceEEE
Confidence 110 001111 122 22333444444332211 11223466778888887643
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=97.97 E-value=1.1e-05 Score=82.31 Aligned_cols=105 Identities=14% Similarity=0.029 Sum_probs=64.2
Q ss_pred CCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCCC---cEEecCCCC----CCCCCCCCcceEEe
Q 044932 309 IRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGFP---AVVSPLGNR----RLPFPSGVFDAIHC 378 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL~---~i~~~~dt~----~LPFpD~SFDlVhc 378 (689)
+++|||+.||+|.|+.+++.. .|+++|+++.... ...+-+...|+. ..+...|.. .+.-....||+|++
T Consensus 145 g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~-~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~ 223 (317)
T d2b78a2 145 GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRA-LSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII 223 (317)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHH-HHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHH-HHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEE
Confidence 579999999999998766532 4999999985221 122223334553 223333331 11123468999997
Q ss_pred cc--------ccccccccHHHHHHHHHhccCCCcEEEEEcCCCc
Q 044932 379 DG--------CSITWHAHGGKLLLEMNRILRPSGYFILSTKHDS 414 (689)
Q Consensus 379 s~--------cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~ 414 (689)
-- ....-..+...++....++|+|||+|+++.-...
T Consensus 224 DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~ 267 (317)
T d2b78a2 224 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN 267 (317)
T ss_dssp CCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred cChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 31 0000011234678888999999999999875433
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.95 E-value=7.6e-06 Score=79.81 Aligned_cols=93 Identities=14% Similarity=0.185 Sum_probs=60.6
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
+.++|||||||+|.++..|+++ .++++|+-+. ++.+... ....+...+. .-|+|. .|+++...++.
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v------i~~~~~~-~r~~~~~~d~-~~~~P~--ad~~~l~~vlh 150 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV------IEDAPSY-PGVEHVGGDM-FVSIPK--ADAVFMKWICH 150 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT------TTTCCCC-TTEEEEECCT-TTCCCC--CSCEECSSSST
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh------hhhcccC-CceEEecccc-cccCCC--cceEEEEEEee
Confidence 4789999999999999888863 4778887442 2221111 1112222222 124553 35555566666
Q ss_pred cccc-cHHHHHHHHHhccCCCcEEEEEc
Q 044932 384 TWHA-HGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 384 ~W~~-d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
.|.. +...+|+.+++.|+|||.++|.+
T Consensus 151 ~~~d~~~~~iL~~~~~al~pgg~~li~d 178 (243)
T d1kyza2 151 DWSDEHCLKFLKNCYEALPDNGKVIVAE 178 (243)
T ss_dssp TSCHHHHHHHHHHHHHHCCSSSCEEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 6653 45689999999999999999975
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.94 E-value=5.6e-06 Score=79.48 Aligned_cols=64 Identities=14% Similarity=0.132 Sum_probs=45.2
Q ss_pred CCCeEEEECCccchhHHHhhc---CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLA---KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~---~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
.+++|||+|||+|.++..++. ..|+++|+++ .+++.|++..-...+...|...+ ++.||+|++.
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~-----~a~~~ar~N~~~~~~~~~D~~~l---~~~fD~Vi~N 114 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDP-----DAIETAKRNCGGVNFMVADVSEI---SGKYDTWIMN 114 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCH-----HHHHHHHHHCTTSEEEECCGGGC---CCCEEEEEEC
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCH-----HHHHHHHHccccccEEEEehhhc---CCcceEEEeC
Confidence 357999999999988755443 3499999876 46777776543344455555554 3789999975
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.94 E-value=2.7e-06 Score=77.29 Aligned_cols=100 Identities=10% Similarity=0.107 Sum_probs=60.5
Q ss_pred CCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcCCCc--EEecCCCCC-CCCCCCCcceEEecccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERGFPA--VVSPLGNRR-LPFPSGVFDAIHCDGCS 382 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRGL~~--i~~~~dt~~-LPFpD~SFDlVhcs~cl 382 (689)
+.+|||+|||+|.++...+.+ .|+++|.++... ....+.+...++.. .+...|+.. ++...+.||+|++.-
T Consensus 15 g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~-~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP-- 91 (152)
T d2esra1 15 GGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQ-AIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP-- 91 (152)
T ss_dssp SCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHH-HHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC--
T ss_pred CCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhh-hhhhhhhhhcccccchhhhcccccccccccccccceeEech--
Confidence 568999999999998755543 589999887421 11112222235443 233444322 345678999998741
Q ss_pred ccccc-cHHHHHHHH--HhccCCCcEEEEEcCC
Q 044932 383 ITWHA-HGGKLLLEM--NRILRPSGYFILSTKH 412 (689)
Q Consensus 383 i~W~~-d~~~aL~EI--~RVLRPGG~fVIsdp~ 412 (689)
|+.. .....|..+ .++|+|||.+++....
T Consensus 92 -Py~~~~~~~~l~~i~~~~~L~~~g~iiiE~~~ 123 (152)
T d2esra1 92 -PYAKETIVATIEALAAKNLLSEQVMVVCETDK 123 (152)
T ss_dssp -SSHHHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred -hhccchHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence 2221 122344433 4789999999997654
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.84 E-value=1.9e-05 Score=80.54 Aligned_cols=100 Identities=18% Similarity=0.057 Sum_probs=62.5
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHH----cCCC---cEEecCCCCC----CCCCCCCcc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALE----RGFP---AVVSPLGNRR----LPFPSGVFD 374 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~e----RGL~---~i~~~~dt~~----LPFpD~SFD 374 (689)
...+|||+.||||.|+.+++.. .|+++|+++ .+++.|.+ .|+. ..+...|... +....+.||
T Consensus 132 ~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~-----~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD 206 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASK-----KAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYD 206 (309)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCH-----HHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBS
T ss_pred CCCeEEEecCCCcHHHHHHHhCCCeEEEEeChH-----HHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCC
Confidence 3579999999999998877754 588888775 34555543 2553 2344444311 112357899
Q ss_pred eEEec-------ccccccc--ccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 375 AIHCD-------GCSITWH--AHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 375 lVhcs-------~cli~W~--~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+|++- .....|. .+...++..+.++|+|||.+++....
T Consensus 207 ~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~ 253 (309)
T d2igta1 207 IILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 253 (309)
T ss_dssp EEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred EEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence 99973 1111232 12344566788899999987776544
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=97.82 E-value=1.5e-06 Score=80.90 Aligned_cols=89 Identities=21% Similarity=0.275 Sum_probs=71.1
Q ss_pred EEeecCCcchhHHHHhccCCceEEEeccCC-CCCchhhhhccccchhhccccCCCCCCCccchhhccccccccccCCcCC
Q 044932 549 NVMDMKSIYGGFAAALAQQKIWVMNVVPVH-APDTLPVIYDRGLVGIYHDWCESFGTYPRSYDLLHADHLFSRLKSRCRQ 627 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~~vWVMNvvp~~-~~~tL~vI~~RGLig~yhdwce~f~typrTyDLlHa~~lfs~~~~~c~~ 627 (689)
.|||+++|+|.|+.+|... +-++ +++.|.+.-.|++ -.++..++.++..+.+||+|++.++|....+
T Consensus 39 ~vLDiGcG~G~~~~~~~~~-------~giD~s~~~~~~a~~~~~-~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d---- 106 (208)
T d1vlma_ 39 RGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKRGV-FVLKGTAENLPLKDESFDFALMVTTICFVDD---- 106 (208)
T ss_dssp CEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHTTC-EEEECBTTBCCSCTTCEEEEEEESCGGGSSC----
T ss_pred eEEEECCCCcccccccceE-------EEEeCChhhccccccccc-ccccccccccccccccccccccccccccccc----
Confidence 4999999999999999642 2233 2466666667763 4677778888888999999999999998753
Q ss_pred ccceeeeeccccccCcEEEEeC
Q 044932 628 PVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 628 ~~~illEmDRILRP~G~~iirD 649 (689)
+..+|-++-|+|+|||.++|.+
T Consensus 107 ~~~~l~~~~~~L~pgG~l~i~~ 128 (208)
T d1vlma_ 107 PERALKEAYRILKKGGYLIVGI 128 (208)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccchhhhhhcCCCCceEEEEe
Confidence 3568999999999999999974
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.78 E-value=1e-05 Score=77.90 Aligned_cols=98 Identities=17% Similarity=0.228 Sum_probs=62.2
Q ss_pred CCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHcCCCc--EEecCCCCC-C-----CCCCCCcc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALERGFPA--VVSPLGNRR-L-----PFPSGVFD 374 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eRGL~~--i~~~~dt~~-L-----PFpD~SFD 374 (689)
..++||++|||+|..+.+|+.. .|+++|+++... +.+.+.....|+.. .+...++.. | .+..+.||
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~-~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D 134 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYA-AITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 134 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHH-HHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHH-HHHHHHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence 3579999999999988877642 489999887422 22222233346543 233333211 2 25667899
Q ss_pred eEEecccccccccc--HHHHHHHHHhccCCCcEEEEEc
Q 044932 375 AIHCDGCSITWHAH--GGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 375 lVhcs~cli~W~~d--~~~aL~EI~RVLRPGG~fVIsd 410 (689)
+|+.-. ++.. ....|.+..|+|||||++++.+
T Consensus 135 ~ifiD~----~~~~~~~~~~l~~~~~lLkpGGvIv~Dd 168 (214)
T d2cl5a1 135 MVFLDH----WKDRYLPDTLLLEKCGLLRKGTVLLADN 168 (214)
T ss_dssp EEEECS----CGGGHHHHHHHHHHTTCEEEEEEEEESC
T ss_pred eeeecc----cccccccHHHHHHHhCccCCCcEEEEeC
Confidence 998752 2222 2245788899999999887765
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.75 E-value=1.2e-05 Score=76.51 Aligned_cols=101 Identities=15% Similarity=0.219 Sum_probs=67.2
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc----CCCcEEecCCCCCC-----CCCCCCcc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER----GFPAVVSPLGNRRL-----PFPSGVFD 374 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR----GL~~i~~~~dt~~L-----PFpD~SFD 374 (689)
...++||++||+|+++.++++. .|+++|.++ .|++.|.++ +....+...+...+ .+..++||
T Consensus 23 ~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~-----~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vd 97 (192)
T d1m6ya2 23 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDS-----EVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVD 97 (192)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCH-----HHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEE
T ss_pred CCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechH-----HHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCcc
Confidence 3569999999999998877753 489999875 578888775 22223332222222 35568999
Q ss_pred eEEecc-cccc---c----cccHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 375 AIHCDG-CSIT---W----HAHGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 375 lVhcs~-cli~---W----~~d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
.|+.-. +..+ . .......|..+.++|+|||.+++..-+.
T Consensus 98 gIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s 144 (192)
T d1m6ya2 98 GILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS 144 (192)
T ss_dssp EEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred eeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence 997531 2111 0 1123578899999999999999887653
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=97.72 E-value=4.2e-05 Score=76.50 Aligned_cols=130 Identities=15% Similarity=0.191 Sum_probs=76.5
Q ss_pred CCeEEEECCccchhHHHhhc---CCeEEEEcCCcccHHHHHHHHHH----cCCCcEE--ecCCC-CCCCCCCCCcceEEe
Q 044932 309 IRVVLEIGSADLSFVASLLA---KEVLTLTVGLKDDLVDLAQVALE----RGFPAVV--SPLGN-RRLPFPSGVFDAIHC 378 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~---~~V~gmDIsp~D~seamlq~A~e----RGL~~i~--~~~dt-~~LPFpD~SFDlVhc 378 (689)
..+|||+|||+|..+..++. ..|+++|+++. +++.|.+ .++...+ ...+. ..++...+.||+|+|
T Consensus 111 ~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~-----Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVs 185 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSK-----AVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILS 185 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHH-----HHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEE
T ss_pred ccEEEEeeeeeehhhhhhhhcccceeeechhhhh-----HHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEE
Confidence 46899999999987665553 35999999873 4444443 3554332 22221 222333478999998
Q ss_pred ccccc------c----cc--------ccHHHHHHH-HHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccc
Q 044932 379 DGCSI------T----WH--------AHGGKLLLE-MNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDE 439 (689)
Q Consensus 379 s~cli------~----W~--------~d~~~aL~E-I~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~ 439 (689)
.-=.+ + |. .|+..++.. +.+.|+|||++++-...... +.+.+++...+|- + +-
T Consensus 186 NPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~Q~---~~v~~l~~~~g~~----k-Dl 257 (271)
T d1nv8a_ 186 NPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQV---EELKKIVSDTVFL----K-DS 257 (271)
T ss_dssp CCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCH---HHHTTTSTTCEEE----E-CT
T ss_pred cccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHHHH---HHHHHHHHhCCEE----e-cc
Confidence 51100 0 11 111122222 56889999999987765443 3367777777772 2 22
Q ss_pred cCceeEEEEEeC
Q 044932 440 ISEMGVKIYQKP 451 (689)
Q Consensus 440 ~g~~~i~IwqKp 451 (689)
.+...+++.+|.
T Consensus 258 ~g~~R~~~~~k~ 269 (271)
T d1nv8a_ 258 AGKYRFLLLNRR 269 (271)
T ss_dssp TSSEEEEEEECC
T ss_pred CCCcEEEEEEEc
Confidence 345567777775
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.71 E-value=0.00016 Score=72.24 Aligned_cols=139 Identities=10% Similarity=0.067 Sum_probs=79.7
Q ss_pred CCCeEEEECCccchhHHHhhc----C-----CeEEEEcCCcccHHHHHHHHH----HcCCCcEEecCCCCCCCCCCCCcc
Q 044932 308 NIRVVLEIGSADLSFVASLLA----K-----EVLTLTVGLKDDLVDLAQVAL----ERGFPAVVSPLGNRRLPFPSGVFD 374 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~----~-----~V~gmDIsp~D~seamlq~A~----eRGL~~i~~~~dt~~LPFpD~SFD 374 (689)
...+|||.|||+|.|..++.. . .++|+|+++. ++..|. ..+........+... ..+...||
T Consensus 117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~-----~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~fD 190 (328)
T d2f8la1 117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDL-----LISLALVGADLQRQKMTLLHQDGLA-NLLVDPVD 190 (328)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHH-----HHHHHHHHHHHHTCCCEEEESCTTS-CCCCCCEE
T ss_pred CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHH-----HHHHHHHHHHHhhhhhhhhcccccc-cccccccc
Confidence 346899999999998876542 2 4889998874 333332 234444443333322 24457999
Q ss_pred eEEecccc-cccc---------------cc-HHHHHHHHHhccCCCcEEEEEcCCCchh--HHHHHHHHHHhcceeE-EE
Q 044932 375 AIHCDGCS-ITWH---------------AH-GGKLLLEMNRILRPSGYFILSTKHDSIE--EEEALTTLTASICWNI-LA 434 (689)
Q Consensus 375 lVhcs~cl-i~W~---------------~d-~~~aL~EI~RVLRPGG~fVIsdp~~~le--~~~~ie~La~~l~W~~-v~ 434 (689)
+|++.-=. ..+. .+ ...++..+.+.|+|||++++..|...+. ....+...+...++-. +.
T Consensus 191 ~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~~i~~ii 270 (328)
T d2f8la1 191 VVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGII 270 (328)
T ss_dssp EEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEE
T ss_pred ccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhCCcEEEEE
Confidence 99985210 0000 01 1235777899999999999988876542 2334555544444432 22
Q ss_pred e-ecccc----CceeEEEEEeCC
Q 044932 435 H-KTDEI----SEMGVKIYQKPE 452 (689)
Q Consensus 435 ~-~~~~~----g~~~i~IwqKp~ 452 (689)
. ....+ -...|++++|..
T Consensus 271 ~lp~~~F~~~~~~t~ilvl~K~~ 293 (328)
T d2f8la1 271 KLPETLFKSEQARKSILILEKAD 293 (328)
T ss_dssp ECCGGGSCC-CCCEEEEEEEECC
T ss_pred ECCccccCCCCCCeEEEEEECCC
Confidence 2 12222 123477777753
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=3e-05 Score=75.13 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=70.5
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHcCCCcE--EecCC
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALERGFPAV--VSPLG 362 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eRGL~~i--~~~~d 362 (689)
..++..|.++. ..++||+||||+|.-+.+++.. .|+++|+++... ..+.+.....|+... +...+
T Consensus 48 g~lL~~L~~~~-------~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~-~~A~~~~~~ag~~~~i~~~~Gd 119 (219)
T d2avda1 48 AQLLANLARLI-------QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPP-ELGRPLWRQAEAEHKIDLRLKP 119 (219)
T ss_dssp HHHHHHHHHHT-------TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHH-HHHHHHHHHTTCTTTEEEEESC
T ss_pred HHHHHHHHHcc-------CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHH-HHHHHHHHhcCccceEEEEEee
Confidence 45555555542 3679999999999888887742 488999988422 222233333455432 22223
Q ss_pred C-CCCC-----CCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 363 N-RRLP-----FPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 363 t-~~LP-----FpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
+ ..++ ..+++||+|+... +...-..++..+.+.|+|||.+++.+.
T Consensus 120 a~e~l~~~~~~~~~~~fD~ifiD~----dk~~y~~~~~~~~~lL~~GGvii~Dn~ 170 (219)
T d2avda1 120 ALETLDELLAAGEAGTFDVAVVDA----DKENCSAYYERCLQLLRPGGILAVLRV 170 (219)
T ss_dssp HHHHHHHHHHTTCTTCEEEEEECS----CSTTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred hhhcchhhhhhcccCCccEEEEeC----CHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 2 1121 3457999998642 233445788899999999999999864
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.65 E-value=2.5e-05 Score=76.51 Aligned_cols=118 Identities=9% Similarity=0.089 Sum_probs=75.6
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccccc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGCSI 383 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~cli 383 (689)
..++|||||||+|.++..++.+ .++++|+. ..++.+... -...+...|.. -|.| .+|++++..+++
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp------~vi~~~~~~-~rv~~~~gD~f-~~~p--~aD~~~l~~vLH 149 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRP------QVVENLSGS-NNLTYVGGDMF-TSIP--NADAVLLKYILH 149 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH------HHHTTCCCB-TTEEEEECCTT-TCCC--CCSEEEEESCGG
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecCH------HHHHhCccc-CceEEEecCcc-cCCC--CCcEEEEEeecc
Confidence 4678999999999998888753 47778862 233322111 11222233322 1344 579999988887
Q ss_pred ccccc-HHHHHHHHHhccCCC---cEEEEEcCC-----Cc--------h------------hHHHHHHHHHHhcceeEEE
Q 044932 384 TWHAH-GGKLLLEMNRILRPS---GYFILSTKH-----DS--------I------------EEEEALTTLTASICWNILA 434 (689)
Q Consensus 384 ~W~~d-~~~aL~EI~RVLRPG---G~fVIsdp~-----~~--------l------------e~~~~ie~La~~l~W~~v~ 434 (689)
+|.++ -..+|+.+++.|+|| |.++|.+.. .. + ...+++.++++..+|+.+.
T Consensus 150 dw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~~~ 229 (244)
T d1fp2a2 150 NWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYK 229 (244)
T ss_dssp GSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEE
T ss_pred cCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCceEE
Confidence 77643 357899999999999 777777521 00 0 0134677888888887654
Q ss_pred e
Q 044932 435 H 435 (689)
Q Consensus 435 ~ 435 (689)
.
T Consensus 230 i 230 (244)
T d1fp2a2 230 I 230 (244)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=4.8e-05 Score=71.03 Aligned_cols=129 Identities=9% Similarity=0.066 Sum_probs=73.9
Q ss_pred CCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHH-HHHcCCCcE-EecCCCC-CCCCCCCCcceEEecccc
Q 044932 309 IRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQV-ALERGFPAV-VSPLGNR-RLPFPSGVFDAIHCDGCS 382 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~-A~eRGL~~i-~~~~dt~-~LPFpD~SFDlVhcs~cl 382 (689)
..+|||++||+|.+|...+.+ .|+.+|.++.-. ..+.. +...++... +...|+. -|......||+|++--
T Consensus 44 ~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~--~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DP-- 119 (183)
T d2fpoa1 44 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVS--QQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDP-- 119 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHH--HHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECC--
T ss_pred hhhhhhhhccccceeeeEEecCcceeEEEEEeechh--hHHHHHHhhccccceeeeeecccccccccccccCEEEEcC--
Confidence 458999999999999866654 488898876421 22222 222233322 2233321 2334568999999742
Q ss_pred ccccc-cHHHHHHHHH--hccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccccCceeEEEEEeC
Q 044932 383 ITWHA-HGGKLLLEMN--RILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEISEMGVKIYQKP 451 (689)
Q Consensus 383 i~W~~-d~~~aL~EI~--RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqKp 451 (689)
||.. ....+|.-+. .+|+|+|.+++....... +..+ .-+|+.+..+. .|...+.+|+|-
T Consensus 120 -PY~~~~~~~~l~~l~~~~~L~~~~iIiiE~~~~~~-----~~~~--~~~~~i~k~k~--yG~t~i~~~~k~ 181 (183)
T d2fpoa1 120 -PFRRGLLEETINLLEDNGWLADEALIYVESEVENG-----LPTV--PANWSLHREKV--AGQVAYRLYQRE 181 (183)
T ss_dssp -SSSTTTHHHHHHHHHHTTCEEEEEEEEEEEEGGGC-----SCCC--CTTEEEEEEEE--ETTEEEEEEEEC
T ss_pred -ccccchHHHHHHHHHHCCCCCCCeEEEEEecCcCC-----cccC--CCCcEEEEEEE--eCcEEEEEEEEc
Confidence 2222 2234444443 479999999986432110 0001 12677765443 466778899884
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=0.00063 Score=66.52 Aligned_cols=135 Identities=10% Similarity=0.081 Sum_probs=76.3
Q ss_pred HHHHHHHhhcccccC-CCCCCeEEEECCccchhHHHhhc----CCeEEEEcCCcccHHHHHHHHHH----cCCCcEEec-
Q 044932 291 HYLESIEEMVPDIEW-GKNIRVVLEIGSADLSFVASLLA----KEVLTLTVGLKDDLVDLAQVALE----RGFPAVVSP- 360 (689)
Q Consensus 291 ~Yid~L~~~Lp~l~~-G~~~R~VLDVGCGtGsfaa~La~----~~V~gmDIsp~D~seamlq~A~e----RGL~~i~~~- 360 (689)
.|+..|..++..... .....+|||||||+|..+..|+. ..++|+|+++. +++.|.+ .++...+..
T Consensus 43 ~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~-----al~~A~~N~~~n~l~~~~~~~ 117 (250)
T d2h00a1 43 NYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDM-----CFNYAKKNVEQNNLSDLIKVV 117 (250)
T ss_dssp HHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHH-----HHHHHHHHHHHTTCTTTEEEE
T ss_pred HHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHH-----HHHHHHHHHHHhCCCcceeee
Confidence 455666655432111 12456899999999987766653 46999999874 4444443 355443221
Q ss_pred -CCC-CC-----CCCCCCCcceEEeccccccc--------------c---------------c-----cHHHHHHHHHhc
Q 044932 361 -LGN-RR-----LPFPSGVFDAIHCDGCSITW--------------H---------------A-----HGGKLLLEMNRI 399 (689)
Q Consensus 361 -~dt-~~-----LPFpD~SFDlVhcs~cli~W--------------~---------------~-----d~~~aL~EI~RV 399 (689)
.+. .. ....++.||+|+|.-=.++- . + ....++.|..+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~ 197 (250)
T d2h00a1 118 KVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQL 197 (250)
T ss_dssp ECCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHH
T ss_pred eeccHHhhhhhhhhcccCceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHH
Confidence 111 11 12346789999985211100 0 0 012346677788
Q ss_pred cCCCcEEEEEcC-CCchhHHHHHHHHHHhcceeEE
Q 044932 400 LRPSGYFILSTK-HDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 400 LRPGG~fVIsdp-~~~le~~~~ie~La~~l~W~~v 433 (689)
++..|++..... ...+. .+..+++..++..+
T Consensus 198 ~~~~g~~t~~ig~~~~l~---~i~~~L~~~g~~~i 229 (250)
T d2h00a1 198 KKRLRWYSCMLGKKCSLA---PLKEELRIQGVPKV 229 (250)
T ss_dssp GGGBSCEEEEESSTTSHH---HHHHHHHHTTCSEE
T ss_pred hhcCcEEEEEecchhhHH---HHHHHHHHcCCCeE
Confidence 888888865433 33332 36677788887654
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.54 E-value=0.0003 Score=65.10 Aligned_cols=143 Identities=15% Similarity=0.068 Sum_probs=78.5
Q ss_pred HHHHhhcccccCCCCCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCC
Q 044932 294 ESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPF 368 (689)
Q Consensus 294 d~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPF 368 (689)
++|..++.. . ...+|||.|||+|.|...+.. ..+.++|+++... ..+ ..+.+...+.... .
T Consensus 9 ~~m~~l~~~-~---~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~-----~~~----~~~~~~~~~~~~~-~ 74 (223)
T d2ih2a1 9 DFMVSLAEA-P---RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKAL-----DLP----PWAEGILADFLLW-E 74 (223)
T ss_dssp HHHHHHCCC-C---TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTC-----CCC----TTEEEEESCGGGC-C
T ss_pred HHHHHhcCC-C---CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHH-----hhc----ccceeeeeehhcc-c
Confidence 445555432 2 356899999999999876653 2489999987522 111 1112222222222 2
Q ss_pred CCCCcceEEecccc--ccccc-------------------------c-HHHHHHHHHhccCCCcEEEEEcCCCchh--HH
Q 044932 369 PSGVFDAIHCDGCS--ITWHA-------------------------H-GGKLLLEMNRILRPSGYFILSTKHDSIE--EE 418 (689)
Q Consensus 369 pD~SFDlVhcs~cl--i~W~~-------------------------d-~~~aL~EI~RVLRPGG~fVIsdp~~~le--~~ 418 (689)
....||+|++.--. ..+.. + ...++....+.|+|||++++..|...+. ..
T Consensus 75 ~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~~ 154 (223)
T d2ih2a1 75 PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDF 154 (223)
T ss_dssp CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGG
T ss_pred cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcch
Confidence 34789999874210 00000 0 1244667889999999999988775542 22
Q ss_pred HHHHHH-HHhcceeEEEeecccc----CceeEEEEEeC
Q 044932 419 EALTTL-TASICWNILAHKTDEI----SEMGVKIYQKP 451 (689)
Q Consensus 419 ~~ie~L-a~~l~W~~v~~~~~~~----g~~~i~IwqKp 451 (689)
..+++. ++..... +....+.+ -...+.+++|.
T Consensus 155 ~~lR~~l~~~~~i~-i~~~~~~F~~~~v~t~i~~~~k~ 191 (223)
T d2ih2a1 155 ALLREFLAREGKTS-VYYLGEVFPQKKVSAVVIRFQKS 191 (223)
T ss_dssp HHHHHHHHHHSEEE-EEEEESCSTTCCCCEEEEEEESS
T ss_pred HHHHHHHHhcCCEE-EEcchhcCCCCCCcEEEEEEEeC
Confidence 334444 4443333 33333322 12447777774
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=97.45 E-value=4.3e-06 Score=82.00 Aligned_cols=100 Identities=19% Similarity=0.281 Sum_probs=66.7
Q ss_pred CCCCCCeeEEeecCCcchhHHHHhccC-CceEEEeccCCC-CCchhh----hhcccc---chhhccccCCCCCCCccchh
Q 044932 541 GIDWSKIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHA-PDTLPV----IYDRGL---VGIYHDWCESFGTYPRSYDL 611 (689)
Q Consensus 541 ~~~~~~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~-~~tL~v----I~~RGL---ig~yhdwce~f~typrTyDL 611 (689)
+++++ ..|||+++|.|+++..|.+. +.- |+-++- +.-+.. .-..|| |-+++.=.+.++.-+.+||+
T Consensus 64 ~l~~~--~~vLDiGcG~G~~~~~la~~~~~~---v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~ 138 (282)
T d2o57a1 64 VLQRQ--AKGLDLGAGYGGAARFLVRKFGVS---IDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDF 138 (282)
T ss_dssp CCCTT--CEEEEETCTTSHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEE
T ss_pred CCCCC--CEEEEeCCCCcHHHhhhhccCCcE---EEEEeccchhhhhhhcccccccccccccccccccccccccccccch
Confidence 44444 47999999999999999764 432 333332 222222 223344 22333223446666799999
Q ss_pred hccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 612 LHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 612 lHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
|.+.++|-...+. ..+|-|+-|+|+|||.++|.|
T Consensus 139 V~~~~~l~h~~d~----~~~l~~~~~~LkpgG~l~~~~ 172 (282)
T d2o57a1 139 IWSQDAFLHSPDK----LKVFQECARVLKPRGVMAITD 172 (282)
T ss_dssp EEEESCGGGCSCH----HHHHHHHHHHEEEEEEEEEEE
T ss_pred hhccchhhhccCH----HHHHHHHHHhcCCCcEEEEEE
Confidence 9999998877543 457899999999999999974
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.39 E-value=0.00014 Score=67.91 Aligned_cols=125 Identities=15% Similarity=0.124 Sum_probs=73.1
Q ss_pred CCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHH----cCCC--cEEecCCCCC-CC---CCCCCcce
Q 044932 309 IRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALE----RGFP--AVVSPLGNRR-LP---FPSGVFDA 375 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~e----RGL~--~i~~~~dt~~-LP---FpD~SFDl 375 (689)
..+|||+.||+|.+|...+.+ .|+.+|.++. +++.+.+ .+.. ..+...|+.+ |. -....||+
T Consensus 42 ~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~-----a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDl 116 (182)
T d2fhpa1 42 GGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFA-----ALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDL 116 (182)
T ss_dssp SCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHH-----HHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEcccccccccceeeecchhHHHHHHHHHH-----HHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcce
Confidence 578999999999999877655 3888998763 3333332 2443 2233344321 11 23568999
Q ss_pred EEeccccccccc-cHHHHHHHHH--hccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccccCceeEEEEEe
Q 044932 376 IHCDGCSITWHA-HGGKLLLEMN--RILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEISEMGVKIYQK 450 (689)
Q Consensus 376 Vhcs~cli~W~~-d~~~aL~EI~--RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~g~~~i~IwqK 450 (689)
|++-- ||.. +....|..+. .+|+|+|++++....... +.... -.|..+..+. .|...+.+|||
T Consensus 117 IflDP---PY~~~~~~~~l~~i~~~~~L~~~giIi~E~~~~~~-----~~~~~--~~~~~~~~k~--YG~t~l~~~rk 182 (182)
T d2fhpa1 117 VLLDP---PYAKQEIVSQLEKMLERQLLTNEAVIVCETDKTVK-----LPETI--GTLKKTRETV--YGITQVTIYRQ 182 (182)
T ss_dssp EEECC---CGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETTCC-----CCSEE--TTEEEEEEEE--ETTEEEEEEEC
T ss_pred EEech---hhhhhHHHHHHHHHHHCCCCCCCEEEEEEcCCCCC-----CccCC--CceEEEEEEe--eCCEEEEEEeC
Confidence 98742 3322 3345666654 479999999886443211 00011 1466554432 35667889987
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=97.36 E-value=1.5e-05 Score=74.65 Aligned_cols=101 Identities=23% Similarity=0.243 Sum_probs=68.0
Q ss_pred cCCCCCCeeEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhh----hhcccc--chhhccccCCCCCCCccchhh
Q 044932 540 LGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPV----IYDRGL--VGIYHDWCESFGTYPRSYDLL 612 (689)
Q Consensus 540 l~~~~~~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~v----I~~RGL--ig~yhdwce~f~typrTyDLl 612 (689)
++++.+. .|+|+++|.|.|+.+|....--| +=++- ++-+.. +...|+ |-.++.=++.++.-+.+||+|
T Consensus 11 ~~l~~~~--rVLDiGcG~G~~~~~l~~~~~~v---~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v 85 (231)
T d1vl5a_ 11 AALKGNE--EVLDVATGGGHVANAFAPFVKKV---VAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIV 85 (231)
T ss_dssp HTCCSCC--EEEEETCTTCHHHHHHGGGSSEE---EEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEE
T ss_pred cCCCCcC--EEEEecccCcHHHHHHHHhCCEE---EEEECCHHHHhhhhhcccccccccccccccccccccccccccccc
Confidence 4555443 69999999999999998764333 22221 122211 223343 334555566677567899999
Q ss_pred ccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 613 HADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 613 Ha~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
++.++|....+. ..+|-|+-|+|+|||+++|-+
T Consensus 86 ~~~~~l~~~~d~----~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 86 TCRIAAHHFPNP----ASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp EEESCGGGCSCH----HHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccccccCCH----HHHHHHHHHhcCCCcEEEEEe
Confidence 999998876543 557999999999999999865
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.28 E-value=0.00033 Score=67.99 Aligned_cols=110 Identities=13% Similarity=0.089 Sum_probs=70.3
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhc-----CCeEEEEcCCcccHHHHHHHHHHcCCCcE--EecCC
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA-----KEVLTLTVGLKDDLVDLAQVALERGFPAV--VSPLG 362 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~-----~~V~gmDIsp~D~seamlq~A~eRGL~~i--~~~~d 362 (689)
..++..|.++. ..++||++|+++|.-+.+|+. ..|+++++++... ..+.+...+.|+... +...+
T Consensus 48 g~~L~~L~~~~-------~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~-~~A~~~~~~~g~~~~i~~~~g~ 119 (227)
T d1susa1 48 GQFLSMLLKLI-------NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENY-ELGLPVIKKAGVDHKIDFREGP 119 (227)
T ss_dssp HHHHHHHHHHH-------TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHH-HHHHHHHHHTTCGGGEEEEESC
T ss_pred HHHHHHHHHhc-------CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhH-HHHHHHHHHhccccceeeeehH
Confidence 35566666543 368999999999987777662 2489999988522 222333334465432 22222
Q ss_pred C-CCCC------CCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 363 N-RRLP------FPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 363 t-~~LP------FpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
+ .-|| ...++||+|+.-. |...-..++..+.+.|+|||.+++...
T Consensus 120 a~~~L~~l~~~~~~~~~fD~iFiDa----~k~~y~~~~e~~~~ll~~gGiii~DNv 171 (227)
T d1susa1 120 ALPVLDEMIKDEKNHGSYDFIFVDA----DKDNYLNYHKRLIDLVKVGGVIGYDNT 171 (227)
T ss_dssp HHHHHHHHHHCGGGTTCBSEEEECS----CSTTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred HHHHHHHHHhccccCCceeEEEecc----chhhhHHHHHHHHhhcCCCcEEEEccC
Confidence 2 1121 1257899998642 344555788889999999999999853
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.13 E-value=0.005 Score=60.20 Aligned_cols=136 Identities=10% Similarity=0.036 Sum_probs=83.4
Q ss_pred CCeEEEECCccchhHHHhh----cCCeEEEEcCCcccHHHHHHHH-HHcCCCcEEe-cCCCCCC----CCCCCCcceEEe
Q 044932 309 IRVVLEIGSADLSFVASLL----AKEVLTLTVGLKDDLVDLAQVA-LERGFPAVVS-PLGNRRL----PFPSGVFDAIHC 378 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La----~~~V~gmDIsp~D~seamlq~A-~eRGL~~i~~-~~dt~~L----PFpD~SFDlVhc 378 (689)
..++||||+|.|--|.-|+ +..++-+|-+.. -.+.++.+ .+-|+..... ....+.+ .+ ..+||+|+|
T Consensus 71 ~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~K--K~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~-~~~~D~v~s 147 (239)
T d1xdza_ 71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNK--RITFLEKLSEALQLENTTFCHDRAETFGQRKDV-RESYDIVTA 147 (239)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHH--HHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTT-TTCEEEEEE
T ss_pred CCeEEeecCCCchHHHHHHHhCCCccceeecchHH--HHHHHHHHHHHhCCCCcEEEeehhhhccccccc-cccceEEEE
Confidence 4689999999996443332 446777776543 12344433 3447765432 1112222 23 268999987
Q ss_pred ccccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccc----cCceeEEEEEeCC
Q 044932 379 DGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDE----ISEMGVKIYQKPE 452 (689)
Q Consensus 379 s~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~----~g~~~i~IwqKp~ 452 (689)
- .+ .....++.-....|++||.+++.-.....++....+.....++++........ .+.-.+++++|..
T Consensus 148 R-Av----a~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~~~v~~~~lp~~~~~r~lv~i~K~~ 220 (239)
T d1xdza_ 148 R-AV----ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKIK 220 (239)
T ss_dssp E-CC----SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEECS
T ss_pred h-hh----hCHHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEEEEEEEEeCCCCCCCEEEEEEEECC
Confidence 4 32 23557888889999999999998766665555556667778888764332221 1233588888854
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=97.04 E-value=7.1e-05 Score=71.45 Aligned_cols=102 Identities=14% Similarity=0.065 Sum_probs=69.1
Q ss_pred cccCCCCCCeeEEeecCCcchhHHHHhcc-CCceEEEeccCCCCCchhh----hhccccch----hhccccCCCCCCCcc
Q 044932 538 TGLGIDWSKIRNVMDMKSIYGGFAAALAQ-QKIWVMNVVPVHAPDTLPV----IYDRGLVG----IYHDWCESFGTYPRS 608 (689)
Q Consensus 538 ~~l~~~~~~iRNvmDMna~~GgFAAal~~-~~vWVMNvvp~~~~~tL~v----I~~RGLig----~yhdwce~f~typrT 608 (689)
..++++++. .|||+++|.|+++..|.. .+..|.=|=+. +.-+.+ .-..||-. +.-|+-+- +.+..
T Consensus 27 ~~~~l~pg~--~VLDiGCG~G~~~~~la~~~~~~v~GvD~s--~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~--~~~~~ 100 (245)
T d1nkva_ 27 RVLRMKPGT--RILDLGSGSGEMLCTWARDHGITGTGIDMS--SLFTAQAKRRAEELGVSERVHFIHNDAAGY--VANEK 100 (245)
T ss_dssp HHTCCCTTC--EEEEETCTTCHHHHHHHHHTCCEEEEEESC--HHHHHHHHHHHHHTTCTTTEEEEESCCTTC--CCSSC
T ss_pred HHcCCCCCC--EEEEEcCCCCHHHHHHHHhcCCEEEEEecc--cchhhHHHHHHHHhhccccchhhhhHHhhc--cccCc
Confidence 345676663 599999999999998865 46776433221 122221 22235421 23344443 36789
Q ss_pred chhhccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 609 YDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 609 yDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
||+|++.++|....+. ..+|-||-|+|||||.++|.+
T Consensus 101 fD~v~~~~~~~~~~d~----~~~l~~~~r~LkPGG~l~i~~ 137 (245)
T d1nkva_ 101 CDVAACVGATWIAGGF----AGAEELLAQSLKPGGIMLIGE 137 (245)
T ss_dssp EEEEEEESCGGGTSSS----HHHHHHHTTSEEEEEEEEEEE
T ss_pred eeEEEEEehhhccCCH----HHHHHHHHHHcCcCcEEEEEe
Confidence 9999999999877654 447899999999999999975
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=97.03 E-value=4.4e-05 Score=73.95 Aligned_cols=103 Identities=26% Similarity=0.459 Sum_probs=70.4
Q ss_pred CCCCCeeEEeecCCcchhHHHHhccC--CceEEEeccCCCCCch----hhhhccccchhhccc-cCCCCCCCccchhhcc
Q 044932 542 IDWSKIRNVMDMKSIYGGFAAALAQQ--KIWVMNVVPVHAPDTL----PVIYDRGLVGIYHDW-CESFGTYPRSYDLLHA 614 (689)
Q Consensus 542 ~~~~~iRNvmDMna~~GgFAAal~~~--~vWVMNvvp~~~~~tL----~vI~~RGLig~yhdw-ce~f~typrTyDLlHa 614 (689)
++++.++.|+|+++|.|.++++|... .+-+. + ++-|..+ ..+.+.|+..-..-. ...|...|..||+|.+
T Consensus 76 ~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~-~--~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~ 152 (253)
T d1tw3a2 76 YDWTNVRHVLDVGGGKGGFAAAIARRAPHVSAT-V--LEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIIL 152 (253)
T ss_dssp SCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEE-E--EECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEE
T ss_pred cCCccCCEEEEeCCCCCHHHHHHHHhcceeEEE-E--ccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheee
Confidence 46678999999999999999999753 33322 1 1223333 234455654322211 2335667889999999
Q ss_pred ccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 615 DHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 615 ~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
.++|-.+.+... ..||-++=|.|+|||.++|-|
T Consensus 153 ~~vlh~~~d~~~--~~~L~~~~~~LkPGG~l~i~e 185 (253)
T d1tw3a2 153 SFVLLNWPDHDA--VRILTRCAEALEPGGRILIHE 185 (253)
T ss_dssp ESCGGGSCHHHH--HHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccCCchhh--HHHHHHHHHhcCCCcEEEEEe
Confidence 999988765432 247889999999999998865
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=97.02 E-value=6e-05 Score=71.33 Aligned_cols=101 Identities=20% Similarity=0.239 Sum_probs=69.7
Q ss_pred cCCCCCCeeEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchh----hhhcccc--chhhccccCCCCCCCccchhh
Q 044932 540 LGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLP----VIYDRGL--VGIYHDWCESFGTYPRSYDLL 612 (689)
Q Consensus 540 l~~~~~~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~----vI~~RGL--ig~yhdwce~f~typrTyDLl 612 (689)
+.++++ -| |+|+++|.|.++..|.... =+|+=++-. +-|. .+-++|+ +-+++.=.+.++.-..+||+|
T Consensus 12 ~~~~~~-~r-ILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 86 (234)
T d1xxla_ 12 AECRAE-HR-VLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDII 86 (234)
T ss_dssp HTCCTT-CE-EEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEE
T ss_pred hCCCCC-CE-EEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhccccccccccccccccccccccccccee
Confidence 345555 34 8999999999999998753 245544432 2221 1223443 444554456677667899999
Q ss_pred ccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 613 HADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 613 Ha~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
.+.++|....+ +..+|=|+-|+|+|||.+++.+
T Consensus 87 ~~~~~l~~~~d----~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 87 TCRYAAHHFSD----VRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp EEESCGGGCSC----HHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeeceeecccC----HHHHHHHHHHeeCCCcEEEEEE
Confidence 99999876543 3568999999999999998864
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.01 E-value=0.0091 Score=59.70 Aligned_cols=131 Identities=15% Similarity=0.099 Sum_probs=79.9
Q ss_pred HHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEE-ecCCC-C
Q 044932 289 VLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAVV-SPLGN-R 364 (689)
Q Consensus 289 a~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~-~~~dt-~ 364 (689)
+...++.+.+++.. . +..+|||+-||+|.|+..|+.. .|+|+++++..+ ..+.+-|...|+.... ...+. .
T Consensus 197 ~e~l~~~v~~~~~~---~-~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai-~~A~~na~~n~i~n~~~~~~~~~~ 271 (358)
T d1uwva2 197 NQKMVARALEWLDV---Q-PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALV-EKGQQNARLNGLQNVTFYHENLEE 271 (358)
T ss_dssp HHHHHHHHHHHHTC---C-TTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHH-HHHHHHHHHTTCCSEEEEECCTTS
T ss_pred hhHHHHHHHHhhcc---C-CCceEEEecccccccchhccccccEEEeccCcHHHH-HHHHHhHHhcccccceeeecchhh
Confidence 34555556665541 1 3578999999999999999875 599999987422 3334444556776542 22222 1
Q ss_pred ---CCCCCCCCcceEEec--cccccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEE
Q 044932 365 ---RLPFPSGVFDAIHCD--GCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 365 ---~LPFpD~SFDlVhcs--~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~ 434 (689)
.++.....||+|+.- +.-.+ .++..+.+ ++|.-.++||.-|..+.. .+..|.+ .+|++..
T Consensus 272 ~~~~~~~~~~~~d~vilDPPR~G~~------~~~~~l~~-~~~~~ivYVSCnp~TlaR--Dl~~l~~-~gy~l~~ 336 (358)
T d1uwva2 272 DVTKQPWAKNGFDKVLLDPARAGAA------GVMQQIIK-LEPIRIVYVSCNPATLAR--DSEALLK-AGYTIAR 336 (358)
T ss_dssp CCSSSGGGTTCCSEEEECCCTTCCH------HHHHHHHH-HCCSEEEEEESCHHHHHH--HHHHHHH-TTCEEEE
T ss_pred hhhhhhhhhccCceEEeCCCCccHH------HHHHHHHH-cCCCEEEEEeCCHHHHHH--HHHHHHH-CCCeEeE
Confidence 223445789999863 22222 46666665 478889999976644322 2444443 4676643
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.00 E-value=0.00038 Score=69.20 Aligned_cols=113 Identities=18% Similarity=0.161 Sum_probs=67.9
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC---CeEEEEcCCcccHHHHHHHHHHcC--------------
Q 044932 291 HYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK---EVLTLTVGLKDDLVDLAQVALERG-------------- 353 (689)
Q Consensus 291 ~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~---~V~gmDIsp~D~seamlq~A~eRG-------------- 353 (689)
.|.+.|... |.+.. ...++||-+|+|.|..+..++.. .|++++++| .+++.|++--
T Consensus 57 ~Yhe~l~~~-~l~~~-~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~-----~Vi~~a~~~f~~~~~~~~~~~~~~ 129 (276)
T d1mjfa_ 57 SYHEPLVHP-AMLAH-PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDE-----DVIMVSKDLIKIDNGLLEAMLNGK 129 (276)
T ss_dssp HHHHHHHHH-HHHHS-SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCH-----HHHHHHHHHTCTTTTHHHHHHTTC
T ss_pred HHHHHhhcc-hhhcC-CCCceEEEecCCchHHHHHHHHhCCceEEEecCCH-----HHHHHHHHhhhhccchhhhhhccC
Confidence 566655431 21111 25789999999999988877765 377788876 4666665421
Q ss_pred -CCcEEecCCCCCCCCCCCCcceEEeccccccccc----cHHHHHHHHHhccCCCcEEEEEcC
Q 044932 354 -FPAVVSPLGNRRLPFPSGVFDAIHCDGCSITWHA----HGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 354 -L~~i~~~~dt~~LPFpD~SFDlVhcs~cli~W~~----d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
-...+...|+...--.+++||+|++-. .-+... .-..++..+.|.|+|||.+++...
T Consensus 130 d~rv~i~~~Da~~~l~~~~~yDvIi~D~-~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~ 191 (276)
T d1mjfa_ 130 HEKAKLTIGDGFEFIKNNRGFDVIIADS-TDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG 191 (276)
T ss_dssp CSSEEEEESCHHHHHHHCCCEEEEEEEC-CCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCceEEEChHHHHHhccCCCCEEEEeC-CCCCCCcccccCHHHHHhhHhhcCCCceEEEecC
Confidence 111233333211001257899998631 111111 124689999999999999998653
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=96.99 E-value=0.0051 Score=58.75 Aligned_cols=112 Identities=14% Similarity=0.100 Sum_probs=67.9
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhh----cCCeEEEEcCCcccHHHHHHH-HHHcCCCcE-EecCCC
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLL----AKEVLTLTVGLKDDLVDLAQV-ALERGFPAV-VSPLGN 363 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La----~~~V~gmDIsp~D~seamlq~-A~eRGL~~i-~~~~dt 363 (689)
.+++|.+. .++.+. ..+|||+|+|.|--|.-|+ +..++.+|-...- ...++. +.+-|+..+ +.....
T Consensus 52 rHi~DSl~-~~~~~~----~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK--~~FL~~~~~~L~L~nv~v~~~R~ 124 (207)
T d1jsxa_ 52 RHILDSIV-VAPYLQ----GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKR--VRFLRQVQHELKLENIEPVQSRV 124 (207)
T ss_dssp HHHHHHHH-HGGGCC----SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHH--HHHHHHHHHHTTCSSEEEEECCT
T ss_pred HHhcchHh-hhhhhc----CCceeeeeccCCceeeehhhhcccceEEEEecchHH--HHHHHHHHHHcCCcceeeeccch
Confidence 45566554 333332 3489999999996443322 3468888865431 123333 444577643 222333
Q ss_pred CCCCCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCCCc
Q 044932 364 RRLPFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKHDS 414 (689)
Q Consensus 364 ~~LPFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~ 414 (689)
+.+. ++.+||+|+| |++- ....++.-....|++||.+++.-....
T Consensus 125 E~~~-~~~~fD~V~s-RA~~----~~~~ll~~~~~~l~~~g~~~~~KG~~~ 169 (207)
T d1jsxa_ 125 EEFP-SEPPFDGVIS-RAFA----SLNDMVSWCHHLPGEQGRFYALKGQMP 169 (207)
T ss_dssp TTSC-CCSCEEEEEC-SCSS----SHHHHHHHHTTSEEEEEEEEEEESSCC
T ss_pred hhhc-cccccceehh-hhhc----CHHHHHHHHHHhcCCCcEEEEECCCCH
Confidence 4443 4578999976 4432 345778888889999999998865543
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=96.92 E-value=0.0001 Score=68.70 Aligned_cols=94 Identities=20% Similarity=0.322 Sum_probs=64.8
Q ss_pred EEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhccccchhhccccCCCCCCCccchhhccc-cccccccCCcC
Q 044932 549 NVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDRGLVGIYHDWCESFGTYPRSYDLLHAD-HLFSRLKSRCR 626 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~RGLig~yhdwce~f~typrTyDLlHa~-~lfs~~~~~c~ 626 (689)
.|+|+++|.|.|+-.|.+.. + .|+=++- +.-|.+.-++|+.-....=.+.++.-+.+||+|-+. +++....+.
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~-~--~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~-- 119 (246)
T d2avna1 45 RVLDLGGGTGKWSLFLQERG-F--EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENK-- 119 (246)
T ss_dssp EEEEETCTTCHHHHHHHTTT-C--EEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCH--
T ss_pred EEEEECCCCchhcccccccc-e--EEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhhhH--
Confidence 48999999999999998764 3 2333332 345666666665322222235577667999998875 566655443
Q ss_pred CccceeeeeccccccCcEEEEeC
Q 044932 627 QPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 627 ~~~~illEmDRILRP~G~~iirD 649 (689)
..+|=|+-|+|+|||.++|..
T Consensus 120 --~~~l~~i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 120 --DKAFSEIRRVLVPDGLLIATV 140 (246)
T ss_dssp --HHHHHHHHHHEEEEEEEEEEE
T ss_pred --HHHHHHHHhhcCcCcEEEEEE
Confidence 346779999999999999974
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.92 E-value=0.0023 Score=63.49 Aligned_cols=125 Identities=15% Similarity=0.139 Sum_probs=75.0
Q ss_pred CCCeEEEECCccchhHHHhh---cC-CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCC--CCCCCCcceEEe---
Q 044932 308 NIRVVLEIGSADLSFVASLL---AK-EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRL--PFPSGVFDAIHC--- 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La---~~-~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~L--PFpD~SFDlVhc--- 378 (689)
...+|||+++|.|+=+.+|+ .. .|++.|+++.-. ..+.+.+...|+.......+.... +.....||.|++
T Consensus 102 ~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~-~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~DaP 180 (284)
T d1sqga2 102 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRL-SRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAP 180 (284)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTH-HHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECC
T ss_pred ccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhh-hhHhhhhhcccccceeeeccccccchhcccccccEEEEecc
Confidence 45799999999998554444 22 489999988633 334444555577765443332221 134578999984
Q ss_pred -ccc--c-----ccc--cccH--------HHHHHHHHhccCCCcEEEEEcCCCc-hhHHHHHHHHHHh-cceeEE
Q 044932 379 -DGC--S-----ITW--HAHG--------GKLLLEMNRILRPSGYFILSTKHDS-IEEEEALTTLTAS-ICWNIL 433 (689)
Q Consensus 379 -s~c--l-----i~W--~~d~--------~~aL~EI~RVLRPGG~fVIsdp~~~-le~~~~ie~La~~-l~W~~v 433 (689)
+.. + +-| .... ..+|....+.|||||+++.++=.-. .+...-++.++++ ..|+.+
T Consensus 181 CSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~~~~~~~~~ 255 (284)
T d1sqga2 181 CSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAELC 255 (284)
T ss_dssp CCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTCEEC
T ss_pred ccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHHhCCCcEEe
Confidence 321 1 112 1111 2567788899999999999874322 2333456666665 455543
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=96.90 E-value=0.00062 Score=68.91 Aligned_cols=113 Identities=18% Similarity=0.173 Sum_probs=68.3
Q ss_pred HHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc------C----CCc
Q 044932 291 HYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER------G----FPA 356 (689)
Q Consensus 291 ~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR------G----L~~ 356 (689)
.|.+.|.. +|.+.. +..++||.||.|.|..+..++.. .|++++++| ..++.|.+. + -..
T Consensus 62 ~Yhe~l~h-~~l~~~-~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~-----~Vi~~a~~~f~~~~~~~~~d~rv 134 (312)
T d1uira_ 62 IYHETLVH-PAMLTH-PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDG-----ELVEVAKRHMPEWHQGAFDDPRA 134 (312)
T ss_dssp HHHHHHHH-HHHHHS-SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCH-----HHHHHHHHHCHHHHTTGGGCTTE
T ss_pred HHHHHHhh-hhhhhC-CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCH-----HHHHHHHhcCcccccCccCCCce
Confidence 45555543 232222 25789999999999988877653 478888876 455555542 1 112
Q ss_pred EEecCCCCC-CCCCCCCcceEEeccccccccc-------cHHHHHHHHHhccCCCcEEEEEcC
Q 044932 357 VVSPLGNRR-LPFPSGVFDAIHCDGCSITWHA-------HGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 357 i~~~~dt~~-LPFpD~SFDlVhcs~cli~W~~-------d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
.+...|+.. |.-.+..||+|++-.. -++.. .-..++..+.|.|+|||.|++...
T Consensus 135 ~i~~~Da~~~l~~~~~~yDvIi~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~ 196 (312)
T d1uira_ 135 VLVIDDARAYLERTEERYDVVIIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (312)
T ss_dssp EEEESCHHHHHHHCCCCEEEEEEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEchHHHHhhhcCCcccEEEEeCC-CcccccchhhhhhhHHHHHHHHHhcCCCceEEEecC
Confidence 233333211 1113578999986321 11111 114688999999999999998653
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.82 E-value=8.8e-05 Score=73.87 Aligned_cols=108 Identities=10% Similarity=0.111 Sum_probs=77.3
Q ss_pred hhcccCCCCCCeeEEeecCCcchhHHHHhccC-CceEEEeccCCCCCch----hhhhccccchhhccccCCCCCCCccch
Q 044932 536 YLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAPDTL----PVIYDRGLVGIYHDWCESFGTYPRSYD 610 (689)
Q Consensus 536 y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~~tL----~vI~~RGLig~yhdwce~f~typrTyD 610 (689)
++..|++++| -.|||+++|.||||..+.+. ++-|.=|... ++.+ ..+.+.||.+..+--+.-+..+|.+||
T Consensus 44 ~~~~l~l~~g--~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls--~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~fD 119 (280)
T d2fk8a1 44 NLDKLDLKPG--MTLLDIGCGWGTTMRRAVERFDVNVIGLTLS--KNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVD 119 (280)
T ss_dssp HHTTSCCCTT--CEEEEESCTTSHHHHHHHHHHCCEEEEEESC--HHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCS
T ss_pred HHHHcCCCCC--CEEEEecCCchHHHHHHHHhCceeEEEecch--HHHHHHHHHHHHhhccccchhhhhhhhhhhccchh
Confidence 4455666654 35999999999999877654 5544322221 2233 346667887776666666777899999
Q ss_pred hhccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 611 LLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 611 LlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
.|-+.++|-+...+ . ...++=++.|+|+|||.++|.+
T Consensus 120 ~i~si~~~eh~~~~-~-~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 120 RIVSIEAFEHFGHE-N-YDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp EEEEESCGGGTCGG-G-HHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhhHhhHHHHhhhh-h-HHHHHHHHHhccCCCceEEEEE
Confidence 99999999887543 3 2457888999999999998864
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=96.81 E-value=7e-05 Score=70.85 Aligned_cols=92 Identities=22% Similarity=0.378 Sum_probs=59.0
Q ss_pred EEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhcccc--chhhccccCCCCCCCccchhhccccccccccCCc
Q 044932 549 NVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDRGL--VGIYHDWCESFGTYPRSYDLLHADHLFSRLKSRC 625 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~RGL--ig~yhdwce~f~typrTyDLlHa~~lfs~~~~~c 625 (689)
+|||+++|.|.|+..|.+.. | .|+=++- ++-+...-.|.- +-..+.=-+.++ .|.+||+|-+.++|....+.
T Consensus 23 ~VLDiGcG~G~~~~~l~~~g-~--~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~-~~~~fD~I~~~~vleh~~d~- 97 (225)
T d2p7ia1 23 NLLELGSFKGDFTSRLQEHF-N--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQ-LPRRYDNIVLTHVLEHIDDP- 97 (225)
T ss_dssp CEEEESCTTSHHHHHHTTTC-S--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCC-CSSCEEEEEEESCGGGCSSH-
T ss_pred cEEEEeCCCcHHHHHHHHcC-C--eEEEEeCcHHHhhhhhcccccccccccccccccc-cccccccccccceeEecCCH-
Confidence 49999999999999998753 1 2333332 223332222210 111222123333 48999999999999876432
Q ss_pred CCccceeeee-ccccccCcEEEEe
Q 044932 626 RQPVSIVVEM-DRILRPGGWAIVR 648 (689)
Q Consensus 626 ~~~~~illEm-DRILRP~G~~iir 648 (689)
..+|.++ +|+|+|||.++|.
T Consensus 98 ---~~~l~~i~~~~Lk~gG~l~i~ 118 (225)
T d2p7ia1 98 ---VALLKRINDDWLAEGGRLFLV 118 (225)
T ss_dssp ---HHHHHHHHHTTEEEEEEEEEE
T ss_pred ---HHHHHHHHHHhcCCCceEEEE
Confidence 4567787 6999999999985
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.78 E-value=0.00016 Score=72.47 Aligned_cols=111 Identities=11% Similarity=0.123 Sum_probs=74.8
Q ss_pred hhhcccCCCCCCeeEEeecCCcchhHHHHhc-cCCceE--EEeccCCCCCchhhhhccccchhhccccCCCCCCCccchh
Q 044932 535 SYLTGLGIDWSKIRNVMDMKSIYGGFAAALA-QQKIWV--MNVVPVHAPDTLPVIYDRGLVGIYHDWCESFGTYPRSYDL 611 (689)
Q Consensus 535 ~y~~~l~~~~~~iRNvmDMna~~GgFAAal~-~~~vWV--MNvvp~~~~~tL~vI~~RGLig~yhdwce~f~typrTyDL 611 (689)
.+...|++++|. -|||+++|.||+|-.+. ..++-| .++.+....-.-..+.+.||.+-..=-+.-+...|-+||-
T Consensus 53 ~~~~~l~l~~G~--~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~fD~ 130 (285)
T d1kpga_ 53 LALGKLGLQPGM--TLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDR 130 (285)
T ss_dssp HHHTTTTCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSE
T ss_pred HHHHHcCCCCCC--EEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccccc
Confidence 456677888773 49999999999987654 345544 3333322211123567778777655445555666889998
Q ss_pred hccccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 612 LHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 612 lHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
|=+-+.|-+..++= ...++-++.|+|+|||.++|.+
T Consensus 131 i~si~~~eh~~~~~--~~~~~~~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 131 IVSIGAFEHFGHER--YDAFFSLAHRLLPADGVMLLHT 166 (285)
T ss_dssp EEEESCGGGTCTTT--HHHHHHHHHHHSCTTCEEEEEE
T ss_pred eeeehhhhhcCchh--HHHHHHHHHhhcCCCCcEEEEE
Confidence 88888887754321 1346888999999999998854
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=96.78 E-value=5e-05 Score=74.18 Aligned_cols=105 Identities=25% Similarity=0.335 Sum_probs=71.0
Q ss_pred CCCCCeeEEeecCCcchhHHHHhccC--C--ceEEEeccCCCCCchhhhhccccchhhcccc-CCCCCCCccchhhcccc
Q 044932 542 IDWSKIRNVMDMKSIYGGFAAALAQQ--K--IWVMNVVPVHAPDTLPVIYDRGLVGIYHDWC-ESFGTYPRSYDLLHADH 616 (689)
Q Consensus 542 ~~~~~iRNvmDMna~~GgFAAal~~~--~--vWVMNvvp~~~~~tL~vI~~RGLig~yhdwc-e~f~typrTyDLlHa~~ 616 (689)
++++.++.|+|+++|.|.++++|.+. . +-++.. |.........+.+.|+.....-.. ..|...|-.||++...+
T Consensus 77 ~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~ 155 (256)
T d1qzza2 77 YDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSF 155 (256)
T ss_dssp SCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEES
T ss_pred CCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhccc
Confidence 46678999999999999999999863 2 233332 311112223455666654221111 23445678899999999
Q ss_pred ccccccC-CcCCccceeeeeccccccCcEEEEeCc
Q 044932 617 LFSRLKS-RCRQPVSIVVEMDRILRPGGWAIVRDK 650 (689)
Q Consensus 617 lfs~~~~-~c~~~~~illEmDRILRP~G~~iirD~ 650 (689)
+|-.|.+ .|. .||-++=|.|+|||.++|-|.
T Consensus 156 vLh~~~d~~~~---~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 156 VLLNWSDEDAL---TILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp CGGGSCHHHHH---HHHHHHHHHEEEEEEEEEEEC
T ss_pred cccccCcHHHH---HHHHHHHhhcCCcceeEEEEe
Confidence 9988865 344 478899999999999888764
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.70 E-value=0.00033 Score=64.97 Aligned_cols=131 Identities=16% Similarity=0.152 Sum_probs=79.0
Q ss_pred CeeEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhh----ccccch-----hhccccCCCCCCCccchhhccc
Q 044932 546 KIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIY----DRGLVG-----IYHDWCESFGTYPRSYDLLHAD 615 (689)
Q Consensus 546 ~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~----~RGLig-----~yhdwce~f~typrTyDLlHa~ 615 (689)
.-.+|+|+++|.|.|+.+|.... . +|.-++- +.-+...- ..|+-. +..|+-+.+ .+.+||+|-++
T Consensus 52 ~~~~VLDiGcG~G~~~~~la~~~-~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~--~~~~fD~Ii~~ 126 (194)
T d1dusa_ 52 KDDDILDLGCGYGVIGIALADEV-K--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV--KDRKYNKIITN 126 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGGS-S--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC--TTSCEEEEEEC
T ss_pred CCCeEEEEeecCChhHHHHHhhc-c--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhh--ccCCceEEEEc
Confidence 45689999999999999987642 2 3443432 22222221 123322 123444433 47899999998
Q ss_pred cccccccCCcCCccceeeeeccccccCcEEEEeCc-hhhHHHHHHHHhhcceeEEEeecCCCceEEEEEe
Q 044932 616 HLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDK-VEILDPLEGILRSLHWEIRMTYAQDKEGILCAQK 684 (689)
Q Consensus 616 ~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~-~~~l~~v~~i~~~lrW~~~~~~~~~~E~iL~~~K 684 (689)
..|....+. +..++=++-|+|+|||.++|--. ..-...+...+..+-+++........=+||.|+|
T Consensus 127 ~p~~~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~~~~~~~~~gf~vl~a~K 193 (194)
T d1dusa_ 127 PPIRAGKEV---LHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp CCSTTCHHH---HHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEETTEEEEEEEC
T ss_pred ccEEecchh---hhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCcEEEEEecCCcEEEEEEE
Confidence 777433221 23467788999999998876422 2233455555666666776654444456888877
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=96.62 E-value=0.0033 Score=61.05 Aligned_cols=111 Identities=13% Similarity=0.115 Sum_probs=60.5
Q ss_pred chhHHHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhh--------cCCeEEEEcCCcccHHHHHHHHHHcCCCcE
Q 044932 286 KGGVLHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLL--------AKEVLTLTVGLKDDLVDLAQVALERGFPAV 357 (689)
Q Consensus 286 ~~ga~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La--------~~~V~gmDIsp~D~seamlq~A~eRGL~~i 357 (689)
+..+-.|-+.|.++ .+.+||++|++.|.-+..++ ...|+++|+.+.... .+...--...
T Consensus 66 p~d~~~~~eli~~~--------KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~-----~~~~~~~~I~ 132 (232)
T d2bm8a1 66 PDTQAVYHDMLWEL--------RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQ-----IPASDMENIT 132 (232)
T ss_dssp HHHHHHHHHHHHHH--------CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCC-----CCGGGCTTEE
T ss_pred HHHHHHHHHHHHHh--------CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhh-----hhhcccccee
Confidence 44555665555443 24689999999996443322 235999999764211 1111111122
Q ss_pred EecCCCCC---C-CCCCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 358 VSPLGNRR---L-PFPSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 358 ~~~~dt~~---L-PFpD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
+...++.. + -+....||+|+.-..+.. .....-.++...|+|||+++|.|..
T Consensus 133 ~i~gDs~~~~~~~~l~~~~~dlIfID~~H~~---~~v~~~~~~~~lLk~GG~iIveD~i 188 (232)
T d2bm8a1 133 LHQGDCSDLTTFEHLREMAHPLIFIDNAHAN---TFNIMKWAVDHLLEEGDYFIIEDMI 188 (232)
T ss_dssp EEECCSSCSGGGGGGSSSCSSEEEEESSCSS---HHHHHHHHHHHTCCTTCEEEECSCH
T ss_pred eeecccccHHHHHHHHhcCCCEEEEcCCcch---HHHHHHHHHhcccCcCCEEEEEcCC
Confidence 22233221 1 134567888876433211 2222222567899999999999874
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=96.60 E-value=0.0014 Score=61.28 Aligned_cols=95 Identities=14% Similarity=0.107 Sum_probs=54.6
Q ss_pred CCCeEEEECCccchhHHHhhcC-----CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCC------CCCCCCCcceE
Q 044932 308 NIRVVLEIGSADLSFVASLLAK-----EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRR------LPFPSGVFDAI 376 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~-----~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~------LPFpD~SFDlV 376 (689)
+..+|||+||+.|+|..++... .|+++|+.|... -.+...+........ .-+....||+|
T Consensus 22 ~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~---------i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlV 92 (180)
T d1ej0a_ 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP---------IVGVDFLQGDFRDELVMKALLERVGDSKVQVV 92 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC---------CTTEEEEESCTTSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEeccCCcceEEEEeeccccceEEEeecccccc---------cCCceEeecccccchhhhhhhhhccCcceeEE
Confidence 4578999999999999877642 388999877321 011111111111000 01234679999
Q ss_pred Eeccc---cccccccH-------HHHHHHHHhccCCCcEEEEEcC
Q 044932 377 HCDGC---SITWHAHG-------GKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 377 hcs~c---li~W~~d~-------~~aL~EI~RVLRPGG~fVIsdp 411 (689)
+|-.+ .-++..|. ..+|.=+.++|||||.|++-.-
T Consensus 93 lSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F 137 (180)
T d1ej0a_ 93 MSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp EECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEe
Confidence 87431 10111111 2345556799999999998753
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.57 E-value=0.00036 Score=67.57 Aligned_cols=105 Identities=11% Similarity=0.182 Sum_probs=61.5
Q ss_pred cccCCCCCCeeEEeecCCcchhHHHHhcc------CCceEEEeccCCCC-Cchhhhhcc-----ccchhhccccCC----
Q 044932 538 TGLGIDWSKIRNVMDMKSIYGGFAAALAQ------QKIWVMNVVPVHAP-DTLPVIYDR-----GLVGIYHDWCES---- 601 (689)
Q Consensus 538 ~~l~~~~~~iRNvmDMna~~GgFAAal~~------~~vWVMNvvp~~~~-~tL~vI~~R-----GLig~yhdwce~---- 601 (689)
..++-....+ +|||+++|.|.|+..|.. .++. ..++=++-. ..|...-.| .+-.+-.+|...
T Consensus 33 ~~l~~~~~~~-~VLDiGcG~G~~~~~ll~~l~~~~~~~~-~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 110 (280)
T d1jqea_ 33 GRIGDTKSEI-KILSIGGGAGEIDLQILSKVQAQYPGVC-INNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSE 110 (280)
T ss_dssp TTTTTTCSEE-EEEEETCTTSHHHHHHHHHHHHHSTTCE-EEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHH
T ss_pred HHhccCCCCC-eEEEEcCCCCHHHHHHHHHhhhhccCCc-eEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhh
Confidence 3343333444 599999999999776643 1222 223333321 222211111 122222233221
Q ss_pred ------CCCCCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 602 ------FGTYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 602 ------f~typrTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
-+.=+.+||+|++.++|-...+ +..+|-+|-|+|+|||+++|-
T Consensus 111 ~~~~~~~~~~~~~fD~I~~~~~l~~~~d----~~~~l~~l~~~LkpgG~l~i~ 159 (280)
T d1jqea_ 111 YQSRMLEKKELQKWDFIHMIQMLYYVKD----IPATLKFFHSLLGTNAKMLII 159 (280)
T ss_dssp HHHHHTTSSSCCCEEEEEEESCGGGCSC----HHHHHHHHHHTEEEEEEEEEE
T ss_pred hcchhcccCCCCceeEEEEccceecCCC----HHHHHHHHHhhCCCCCEEEEE
Confidence 1234789999999999987653 356799999999999988775
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=96.54 E-value=0.0022 Score=59.41 Aligned_cols=126 Identities=17% Similarity=0.211 Sum_probs=71.1
Q ss_pred CCeEEEECCccchhHHHhhcCC---eEEEEcCCcccHHHHHHH-HHHcCCCc---EEecCC---CCCCCCCCCCcceEEe
Q 044932 309 IRVVLEIGSADLSFVASLLAKE---VLTLTVGLKDDLVDLAQV-ALERGFPA---VVSPLG---NRRLPFPSGVFDAIHC 378 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~~---V~gmDIsp~D~seamlq~-A~eRGL~~---i~~~~d---t~~LPFpD~SFDlVhc 378 (689)
..+|||+-||||++|...+.++ |+.+|.+.. +-..++. +..-++.. .+...+ ..........||+|++
T Consensus 44 ~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~--a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl 121 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKT--VANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 121 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHH--HHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred cceEeecccCccceeeeeeeecceeeEEeecccc--hhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence 3589999999999998887664 777887653 1122222 22224322 222222 1233444567999987
Q ss_pred cccccccccc-HHHHHHHHH--hccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEEeeccccCceeEEEEE
Q 044932 379 DGCSITWHAH-GGKLLLEMN--RILRPSGYFILSTKHDSIEEEEALTTLTASICWNILAHKTDEISEMGVKIYQ 449 (689)
Q Consensus 379 s~cli~W~~d-~~~aL~EI~--RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~~~~~~~g~~~i~Iwq 449 (689)
-- |+..+ ...+|.-+. .+|+++|++++-.+.... +...-.|+.+.++. .|...+.+||
T Consensus 122 DP---PY~~~~~~~~l~~l~~~~~L~~~~liiiE~~~~~~--------~~~~~~~~~~k~kk--yG~t~i~~~~ 182 (183)
T d2ifta1 122 DP---PFHFNLAEQAISLLCENNWLKPNALIYVETEKDKP--------LITPENWTLLKEKT--TGIVSYRLYQ 182 (183)
T ss_dssp CC---CSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESSSC--------CCCCTTEEEEEEEE--ETTEEEEEEE
T ss_pred ch---hHhhhhHHHHHHHHHHhCCcCCCcEEEEEecCCCC--------CCCCCCcEEEEEEe--cCCEEEEEec
Confidence 41 22222 234444443 589999999996543211 11112677765443 3556677776
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=96.39 E-value=0.00015 Score=70.57 Aligned_cols=119 Identities=13% Similarity=0.106 Sum_probs=75.4
Q ss_pred CCeeEEeecCCcchhHHHHhccC---CceEEEeccCCCCCchhhh----hccccchhhccccCCCCCCCccchhhccccc
Q 044932 545 SKIRNVMDMKSIYGGFAAALAQQ---KIWVMNVVPVHAPDTLPVI----YDRGLVGIYHDWCESFGTYPRSYDLLHADHL 617 (689)
Q Consensus 545 ~~iRNvmDMna~~GgFAAal~~~---~vWVMNvvp~~~~~tL~vI----~~RGLig~yhdwce~f~typrTyDLlHa~~l 617 (689)
..-.+|||+++|.|.++..|..+ .|......+ .-|... -.+..+=.++.=-+.|+.-+.+||+|.+..+
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~----~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~v 167 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVK----HMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWT 167 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCH----HHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESC
T ss_pred CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCH----HHHHhhhccccccccceeEEccccccccCCCccceEEeecc
Confidence 45668999999999999887643 233222111 222111 1223333333333456655789999999999
Q ss_pred cccccCCcCCccceeeeeccccccCcEEEEeCchh----------------hHHHHHHHHhhcceeEE
Q 044932 618 FSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVE----------------ILDPLEGILRSLHWEIR 669 (689)
Q Consensus 618 fs~~~~~c~~~~~illEmDRILRP~G~~iirD~~~----------------~l~~v~~i~~~lrW~~~ 669 (689)
|-.+.+. . +..+|-++-|+|+|||+++|.|... ....++.+++.-.+++.
T Consensus 168 l~hl~d~-d-~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii 233 (254)
T d1xtpa_ 168 AIYLTDA-D-FVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVV 233 (254)
T ss_dssp GGGSCHH-H-HHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEE
T ss_pred ccccchh-h-hHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEE
Confidence 9876543 2 2457899999999999999986421 14566777765556543
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.35 E-value=0.00027 Score=64.88 Aligned_cols=97 Identities=19% Similarity=0.230 Sum_probs=64.7
Q ss_pred EEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhc----cccchhhc-cccCCCCCCCccchhhcccccccccc
Q 044932 549 NVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYD----RGLVGIYH-DWCESFGTYPRSYDLLHADHLFSRLK 622 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~----RGLig~yh-dwce~f~typrTyDLlHa~~lfs~~~ 622 (689)
.|+|+++|.|.++..|.+... +|+-++-. +-|.+.-+ .|+.-.+. .=-+.++....+||+|.+.++|....
T Consensus 40 ~ILDiGcG~G~~~~~la~~~~---~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~~ 116 (226)
T d1ve3a1 40 KVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFE 116 (226)
T ss_dssp EEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCC
T ss_pred EEEEECCCcchhhhhHhhhhc---ccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhhCC
Confidence 489999999999999987653 34444432 44433332 23222221 11223455569999999999988764
Q ss_pred CCcCCccceeeeeccccccCcEEEEeCc
Q 044932 623 SRCRQPVSIVVEMDRILRPGGWAIVRDK 650 (689)
Q Consensus 623 ~~c~~~~~illEmDRILRP~G~~iirD~ 650 (689)
. .+ +..+|-|+-|+|+|||.++|...
T Consensus 117 ~-~d-~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 117 P-LE-LNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp H-HH-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred h-hH-HHHHHHHHHHHcCcCcEEEEEEc
Confidence 2 23 24578899999999999998753
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.34 E-value=0.014 Score=60.27 Aligned_cols=153 Identities=11% Similarity=0.057 Sum_probs=83.6
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCccchhHHHhhc-----------------CCeEEEEcCCcccHHHHHHHHHHcCCC
Q 044932 293 LESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA-----------------KEVLTLTVGLKDDLVDLAQVALERGFP 355 (689)
Q Consensus 293 id~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~-----------------~~V~gmDIsp~D~seamlq~A~eRGL~ 355 (689)
.++|.+++.. . ...+|||-.||+|+|...+.+ ..+.|+++++....-+.+.... +|+.
T Consensus 151 v~~mv~ll~~---~-~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l-~g~~ 225 (425)
T d2okca1 151 IQAMVDCINP---Q-MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL-HGIG 225 (425)
T ss_dssp HHHHHHHHCC---C-TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH-TTCC
T ss_pred hHhhheeccC---c-ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhh-cCCc
Confidence 4455555431 1 356899999999998755432 2488999987533222222222 3332
Q ss_pred c---EEecCCCCCCCCCCCCcceEEecc--cccccc-------------cc-HHHHHHHHHhccCCCcEEEEEcCCCchh
Q 044932 356 A---VVSPLGNRRLPFPSGVFDAIHCDG--CSITWH-------------AH-GGKLLLEMNRILRPSGYFILSTKHDSIE 416 (689)
Q Consensus 356 ~---i~~~~dt~~LPFpD~SFDlVhcs~--cli~W~-------------~d-~~~aL~EI~RVLRPGG~fVIsdp~~~le 416 (689)
. .+...++.. ..+...||+|++.- ....+. .+ ...++.-+...|+|||++++..|...+.
T Consensus 226 ~~~~~i~~~d~l~-~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~ 304 (425)
T d2okca1 226 TDRSPIVCEDSLE-KEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLF 304 (425)
T ss_dssp SSCCSEEECCTTT-SCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHH
T ss_pred cccceeecCchhh-hhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhh
Confidence 1 122223222 24567899999851 110000 01 1347888999999999999998875542
Q ss_pred ---HHHHHHHHHHhcce-eEEEe-ecccc----CceeEEEEEeC
Q 044932 417 ---EEEALTTLTASICW-NILAH-KTDEI----SEMGVKIYQKP 451 (689)
Q Consensus 417 ---~~~~ie~La~~l~W-~~v~~-~~~~~----g~~~i~IwqKp 451 (689)
....+.+.+-.-++ ..+.. ....+ -...|++++|.
T Consensus 305 ~~~~~~~iR~~Ll~~~~i~aIi~LP~~~F~~t~v~t~Ilil~K~ 348 (425)
T d2okca1 305 EAGAGETIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFSKG 348 (425)
T ss_dssp CSTHHHHHHHHHHHHEEEEEEEECCSSSSSSTTCCEEEEEEEES
T ss_pred hhhhHHHHHHHHHHhcchhHhhcCCcccccCCCCCeEEEEEECC
Confidence 22345555444344 33322 11222 12457888874
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.33 E-value=0.0072 Score=60.71 Aligned_cols=125 Identities=17% Similarity=0.134 Sum_probs=73.9
Q ss_pred CCCeEEEECCccchhHHHh---hcC--CeEEEEcCCcccHHHHHHHHHHcCCCcEE-ecCCCCCCCCCCCCcceEEe---
Q 044932 308 NIRVVLEIGSADLSFVASL---LAK--EVLTLTVGLKDDLVDLAQVALERGFPAVV-SPLGNRRLPFPSGVFDAIHC--- 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~L---a~~--~V~gmDIsp~D~seamlq~A~eRGL~~i~-~~~dt~~LPFpD~SFDlVhc--- 378 (689)
.+.+|||++||.|+=+..+ ... .++++|+++.-. ....+.+...|+..+. ...+...++..+..||.|++
T Consensus 116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~-~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDaP 194 (313)
T d1ixka_ 116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRL-RETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAP 194 (313)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHH-HHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECC
T ss_pred ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHH-HHHHHHHHHHHhhccccccccccccccccccccEEEEccc
Confidence 4578999999999844333 332 378888876321 1222223334666543 34455566666789999985
Q ss_pred -ccc-------cccccccH----------HHHHHHHHhccCCCcEEEEEcCCCch-hHHHHHHHHHHhcceeEE
Q 044932 379 -DGC-------SITWHAHG----------GKLLLEMNRILRPSGYFILSTKHDSI-EEEEALTTLTASICWNIL 433 (689)
Q Consensus 379 -s~c-------li~W~~d~----------~~aL~EI~RVLRPGG~fVIsdp~~~l-e~~~~ie~La~~l~W~~v 433 (689)
+.. .+.|.... ..+|....+.|||||+++.++=.-.. +...-++.+++...++.+
T Consensus 195 CSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~~~~~~~ 268 (313)
T d1ixka_ 195 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVELL 268 (313)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEEE
T ss_pred cccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHHhcCCCEEe
Confidence 321 11222111 24677888999999999998743222 334456777777665543
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=96.25 E-value=0.0076 Score=59.63 Aligned_cols=101 Identities=16% Similarity=0.195 Sum_probs=65.1
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc-----C----CCcEEecCCCCC-CCCCCCCc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER-----G----FPAVVSPLGNRR-LPFPSGVF 373 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR-----G----L~~i~~~~dt~~-LPFpD~SF 373 (689)
..++||-||-|.|..+..++.+ .|+.++++|. .++.|.+- + -...+...|+.. |--.++.|
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~-----Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~y 149 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGK-----VIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQY 149 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHH-----HHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCE
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHH-----HHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCC
Confidence 5689999999999999888764 4788888873 45555432 1 112233334311 11235789
Q ss_pred ceEEecc---ccccccccHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 374 DAIHCDG---CSITWHAHGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 374 DlVhcs~---cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
|+|+.-. ....+.-.-..++..+.|.|+|||.|+......
T Consensus 150 DvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~ 192 (274)
T d1iy9a_ 150 DVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNP 192 (274)
T ss_dssp EEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCT
T ss_pred CEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCc
Confidence 9998531 111111123478999999999999999986543
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=96.21 E-value=0.00048 Score=67.27 Aligned_cols=101 Identities=21% Similarity=0.235 Sum_probs=62.7
Q ss_pred CeeEEeecCCcchhHHHHhccC--CceEEEeccCCC-CCchhhhhcccc-chhhccccCCCCCCCccchhhccccccccc
Q 044932 546 KIRNVMDMKSIYGGFAAALAQQ--KIWVMNVVPVHA-PDTLPVIYDRGL-VGIYHDWCESFGTYPRSYDLLHADHLFSRL 621 (689)
Q Consensus 546 ~iRNvmDMna~~GgFAAal~~~--~vWVMNvvp~~~-~~tL~vI~~RGL-ig~yhdwce~f~typrTyDLlHa~~lfs~~ 621 (689)
.-..|+|+++|.|.|+.+|.+. .+-| +=++- +.-|.....|+- +...+.=.+.++.-+.+||+|.+.+.+.
T Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~---~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~-- 158 (268)
T d1p91a_ 84 KATAVLDIGCGEGYYTHAFADALPEITT---FGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC-- 158 (268)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEE---EEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCC--
T ss_pred CCCEEEEeCCCCcHHHHHHHHHCCCCEE---EEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHH--
Confidence 4567999999999999999764 3333 32332 233333333321 1222223456777889999998654332
Q ss_pred cCCcCCccceeeeeccccccCcEEEEeC-chhhHHHHHHH
Q 044932 622 KSRCRQPVSIVVEMDRILRPGGWAIVRD-KVEILDPLEGI 660 (689)
Q Consensus 622 ~~~c~~~~~illEmDRILRP~G~~iirD-~~~~l~~v~~i 660 (689)
-+-||-|||||||.+++-. ..+.+..++.+
T Consensus 159 ---------~~~e~~rvLkpgG~l~~~~p~~~~l~el~~~ 189 (268)
T d1p91a_ 159 ---------KAEELARVVKPGGWVITATPGPRHLMELKGL 189 (268)
T ss_dssp ---------CHHHHHHHEEEEEEEEEEEECTTTTHHHHTT
T ss_pred ---------HHHHHHHHhCCCcEEEEEeeCCcchHHHHHH
Confidence 2458999999999999974 23344444443
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.18 E-value=0.00041 Score=65.14 Aligned_cols=118 Identities=19% Similarity=0.256 Sum_probs=75.1
Q ss_pred eeEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhh----cccc--chhhccccCCCCCCCccchhhccccccc
Q 044932 547 IRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIY----DRGL--VGIYHDWCESFGTYPRSYDLLHADHLFS 619 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~----~RGL--ig~yhdwce~f~typrTyDLlHa~~lfs 619 (689)
-..|||+++|.|.++..|..+... .|+=++- ++-|...- ..|. +-.++.=.+.|+.-+.+||+|.+.++|.
T Consensus 61 ~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~ 138 (222)
T d2ex4a1 61 TSCALDCGAGIGRITKRLLLPLFR--EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 138 (222)
T ss_dssp CSEEEEETCTTTHHHHHTTTTTCS--EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCEEEEeccCCCHhhHHHHHhcCC--EEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence 456999999999999987654332 2222222 23332221 2222 1112212344666688999999999998
Q ss_pred cccCCcCCccceeeeeccccccCcEEEEeCchh---------------hHHHHHHHHhhcceeE
Q 044932 620 RLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVE---------------ILDPLEGILRSLHWEI 668 (689)
Q Consensus 620 ~~~~~c~~~~~illEmDRILRP~G~~iirD~~~---------------~l~~v~~i~~~lrW~~ 668 (689)
...+. . +..+|-++=|+|+|||.++|.|... ....+++++..--+++
T Consensus 139 h~~~~-~-~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~i 200 (222)
T d2ex4a1 139 HLTDQ-H-LAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSL 200 (222)
T ss_dssp GSCHH-H-HHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCE
T ss_pred cchhh-h-hhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEE
Confidence 77543 2 1357889999999999999974211 3677778877666664
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=96.14 E-value=0.00055 Score=63.12 Aligned_cols=93 Identities=18% Similarity=0.284 Sum_probs=64.1
Q ss_pred EEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhh----hhccccc---hhhccccCCCCCCCccchhhcccccccc
Q 044932 549 NVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPV----IYDRGLV---GIYHDWCESFGTYPRSYDLLHADHLFSR 620 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~v----I~~RGLi---g~yhdwce~f~typrTyDLlHa~~lfs~ 620 (689)
.|+|+++|.|.++..|.++.. .|+-++-. ..|.. +...|+- ....|.++. .++.+||+|.+..+|..
T Consensus 33 rvLDiGcG~G~~~~~la~~g~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~--~~~~~fD~I~~~~~~~~ 107 (198)
T d2i6ga1 33 RTLDLGCGNGRNSLYLAANGY---DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTL--TFDGEYDFILSTVVMMF 107 (198)
T ss_dssp EEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTC--CCCCCEEEEEEESCGGG
T ss_pred cEEEECCCCCHHHHHHHHHhh---hhccccCcHHHHHHHHHHhhhccccchhhhheecccc--cccccccEEEEeeeeec
Confidence 499999999999999998753 23333322 23322 2333442 233444443 36899999999999987
Q ss_pred ccCCcCCccceeeeeccccccCcEEEEe
Q 044932 621 LKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 621 ~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
.... . ...+|=++-|+|+|||.+++.
T Consensus 108 ~~~~-~-~~~~l~~~~~~L~pgG~~~~~ 133 (198)
T d2i6ga1 108 LEAQ-T-IPGLIANMQRCTKPGGYNLIV 133 (198)
T ss_dssp SCTT-H-HHHHHHHHHHTEEEEEEEEEE
T ss_pred CCHH-H-HHHHHHHHHHHcCCCcEEEEE
Confidence 6433 3 256889999999999998886
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=96.13 E-value=0.0055 Score=59.35 Aligned_cols=65 Identities=18% Similarity=0.196 Sum_probs=44.0
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCC---CcEEecCCCCCCCCCCCCcceEE
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGF---PAVVSPLGNRRLPFPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL---~~i~~~~dt~~LPFpD~SFDlVh 377 (689)
...+||+||||+|.++..|++. .|+++++++ .+++.+.++.. ...+...|...++++......|+
T Consensus 21 ~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~-----~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~~~vv 90 (235)
T d1qama_ 21 EHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDH-----KLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSYKIF 90 (235)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSSEEEEECSCH-----HHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCCEEE
T ss_pred CCCeEEEECCCchHHHHHHHhCcCceEEEeecc-----chHHHHHHHhhcccchhhhhhhhhhccccccccceee
Confidence 4679999999999999999864 589998875 45566655532 23455566666666644333343
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=96.11 E-value=0.0078 Score=60.39 Aligned_cols=117 Identities=19% Similarity=0.137 Sum_probs=70.4
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcC---------CCc
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERG---------FPA 356 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRG---------L~~ 356 (689)
..|.+.|.. +|.+.. ...++||=||.|.|..+..++.. .|++++++|. +++.|.+.- -..
T Consensus 73 ~~YhE~l~h-~pl~~~-~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~-----Vi~~a~~~~~~~~~~~~d~rv 145 (295)
T d1inla_ 73 FMYHEMLAH-VPMFLH-PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGL-----VIEAARKYLKQTSCGFDDPRA 145 (295)
T ss_dssp HHHHHHHHH-HHHHHS-SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHH-----HHHHHHHHCHHHHGGGGCTTE
T ss_pred hhhhhhhcc-hhHhhC-CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHH-----HHHHHHHHHHhhcccccCCCc
Confidence 466554442 332212 25789999999999988888764 3788898873 455554421 112
Q ss_pred EEecCCCCC-CCCCCCCcceEEecccccccc-----ccHHHHHHHHHhccCCCcEEEEEcCCCc
Q 044932 357 VVSPLGNRR-LPFPSGVFDAIHCDGCSITWH-----AHGGKLLLEMNRILRPSGYFILSTKHDS 414 (689)
Q Consensus 357 i~~~~dt~~-LPFpD~SFDlVhcs~cli~W~-----~d~~~aL~EI~RVLRPGG~fVIsdp~~~ 414 (689)
.+...|+.. |--.++.||+|++-. .-++. -.-..++..+.|.|+|||.|++......
T Consensus 146 ~v~~~Da~~~l~~~~~~yDvIi~D~-~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~ 208 (295)
T d1inla_ 146 EIVIANGAEYVRKFKNEFDVIIIDS-TDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPF 208 (295)
T ss_dssp EEEESCHHHHGGGCSSCEEEEEEEC-----------CCSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred EEEhhhHHHHHhcCCCCCCEEEEcC-CCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChh
Confidence 233333211 111357899998632 11111 1124789999999999999999876543
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=96.10 E-value=0.00047 Score=67.69 Aligned_cols=96 Identities=14% Similarity=0.114 Sum_probs=61.6
Q ss_pred CCeeEEeecCCcchhHHHHhccC---CceEEEeccCCC-CCchhhh----hccccchh--hccccCCCCCCCccchhhcc
Q 044932 545 SKIRNVMDMKSIYGGFAAALAQQ---KIWVMNVVPVHA-PDTLPVI----YDRGLVGI--YHDWCESFGTYPRSYDLLHA 614 (689)
Q Consensus 545 ~~iRNvmDMna~~GgFAAal~~~---~vWVMNvvp~~~-~~tL~vI----~~RGLig~--yhdwce~f~typrTyDLlHa 614 (689)
.+=+.|+|.++|.|.++..|... ..- |+-++. ++-|... ...|+--. ..|. +.++ ++.+||+|++
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~---v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~-~~~~-~~~~fD~v~~ 100 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSK---YTGIDSGETLLAEARELFRLLPYDSEFLEGDA-TEIE-LNDKYDIAIC 100 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCE---EEEEECCHHHHHHHHHHHHSSSSEEEEEESCT-TTCC-CSSCEEEEEE
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCCCCCE---EEEEecchhHhhhhhccccccccccccccccc-cccc-ccCCceEEEE
Confidence 34467999999999999888652 222 222232 1222211 12232111 1233 3344 5789999999
Q ss_pred ccccccccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 615 DHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 615 ~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
.++|....+. ..+|-+|-|+|+|||++++.|
T Consensus 101 ~~~l~~~~d~----~~~l~~~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 101 HAFLLHMTTP----ETMLQKMIHSVKKGGKIICFE 131 (281)
T ss_dssp ESCGGGCSSH----HHHHHHHHHTEEEEEEEEEEE
T ss_pred ehhhhcCCCH----HHHHHHHHHHcCcCcEEEEEE
Confidence 9999876542 457899999999999999875
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=96.09 E-value=0.00035 Score=66.97 Aligned_cols=99 Identities=18% Similarity=0.140 Sum_probs=62.0
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhcc----cc---chhhccccCCCCC-CCccchhhcccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDR----GL---VGIYHDWCESFGT-YPRSYDLLHADHLF 618 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~R----GL---ig~yhdwce~f~t-yprTyDLlHa~~lf 618 (689)
..|||+++|.|+++..+.+.+.. +|+=++-. ..|.....| +. +-.++.=+...+. ...+||+|.+.+.+
T Consensus 26 ~~VLDlGCG~G~~~~~~~~~~~~--~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~l 103 (252)
T d1ri5a_ 26 DSVLDLGCGKGGDLLKYERAGIG--EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF 103 (252)
T ss_dssp CEEEEETCTTTTTHHHHHHHTCS--EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred CEEEEecccCcHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEccee
Confidence 46999999999999999775543 34444432 444444333 21 1111211222232 35689999988776
Q ss_pred ccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 619 SRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 619 s~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
-..-+.-..+..+|-+|-|+|+|||.+|+.
T Consensus 104 ~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~ 133 (252)
T d1ri5a_ 104 HYAFSTSESLDIAQRNIARHLRPGGYFIMT 133 (252)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred eecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence 655333221356889999999999999875
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.06 E-value=0.0024 Score=60.09 Aligned_cols=65 Identities=11% Similarity=0.083 Sum_probs=46.3
Q ss_pred CCCCccchhhccccccccccCC-cCCccceeeeeccccccCcEEEEeCchh----------------hHHHHHHHHhhcc
Q 044932 603 GTYPRSYDLLHADHLFSRLKSR-CRQPVSIVVEMDRILRPGGWAIVRDKVE----------------ILDPLEGILRSLH 665 (689)
Q Consensus 603 ~typrTyDLlHa~~lfs~~~~~-c~~~~~illEmDRILRP~G~~iirD~~~----------------~l~~v~~i~~~lr 665 (689)
+.-+.+||+|-+..++...... -. +..++=+|-|+|||||++|+.+-.. ..+.|+.++..--
T Consensus 147 ~~~~~~fD~i~~~~~l~~~~~~~~~-~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 225 (257)
T d2a14a1 147 PAVLPLADCVLTLLAMECACCSLDA-YRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAG 225 (257)
T ss_dssp TCCCCCEEEEEEESCHHHHCSSHHH-HHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTT
T ss_pred cccCCcccEEeehhhHHHhcccHHH-HHHHHHHHHhccCCCcEEEEEEecccccceeccccccccCCCHHHHHHHHHHCC
Confidence 3446789999998888765322 23 2456788999999999999975221 3677888887766
Q ss_pred eeE
Q 044932 666 WEI 668 (689)
Q Consensus 666 W~~ 668 (689)
+++
T Consensus 226 f~v 228 (257)
T d2a14a1 226 FDI 228 (257)
T ss_dssp EEE
T ss_pred CEE
Confidence 754
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.05 E-value=0.0069 Score=60.38 Aligned_cols=101 Identities=18% Similarity=0.160 Sum_probs=63.0
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc---------CCCcEEecCCCCC-CCCCCCCc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER---------GFPAVVSPLGNRR-LPFPSGVF 373 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR---------GL~~i~~~~dt~~-LPFpD~SF 373 (689)
..++||-||-|.|..+..++.. .|++++++| ..++.|++. .-...+...|+.. |--..++|
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~-----~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~y 152 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDE-----DVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAF 152 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCH-----HHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCE
T ss_pred CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCH-----HHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCC
Confidence 5789999999999999888864 477788876 455555442 1122233333211 11134789
Q ss_pred ceEEecccc---ccccccHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 374 DAIHCDGCS---ITWHAHGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 374 DlVhcs~cl---i~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
|+|++-... ....-.-..++..+.|.|+|||.|++.....
T Consensus 153 DvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~ 195 (285)
T d2o07a1 153 DVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQ 195 (285)
T ss_dssp EEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECT
T ss_pred CEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccch
Confidence 999864210 0111112367899999999999999986543
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.00 E-value=0.016 Score=57.68 Aligned_cols=116 Identities=18% Similarity=0.167 Sum_probs=70.9
Q ss_pred HHHHHHHHhhcccccCCCCCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHc---------CCCc
Q 044932 290 LHYLESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALER---------GFPA 356 (689)
Q Consensus 290 ~~Yid~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eR---------GL~~ 356 (689)
..|.+.|.. +|.+.. ...++||=||-|.|..+..++.. .|++++++| ..++.|++- .-..
T Consensus 64 ~~Yhe~l~h-~~~~~~-~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~-----~Vi~~~~~~f~~~~~~~~~~r~ 136 (290)
T d1xj5a_ 64 CAYQEMITH-LPLCSI-PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDK-----MVVDVSKQFFPDVAIGYEDPRV 136 (290)
T ss_dssp HHHHHHHHH-HHHTTS-SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCH-----HHHHHHHHHCHHHHGGGGSTTE
T ss_pred hHHHHHHhh-HHHhhC-CCCcceEEecCCchHHHHHHHhcccceeeEEecCCH-----HHHHHHHHhchhhhccccCCCc
Confidence 356554543 232221 25789999999999999888765 378888876 355555442 1112
Q ss_pred EEecCCCC-CC-CCCCCCcceEEecccccccc----ccHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 357 VVSPLGNR-RL-PFPSGVFDAIHCDGCSITWH----AHGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 357 i~~~~dt~-~L-PFpD~SFDlVhcs~cli~W~----~d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
.+...|+. -+ -.+++.||+|+.-.. -++. ---..++..+.|.|+|||.+++.....
T Consensus 137 ~i~~~Da~~~l~~~~~~~yDvIi~D~~-dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~ 198 (290)
T d1xj5a_ 137 NLVIGDGVAFLKNAAEGSYDAVIVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL 198 (290)
T ss_dssp EEEESCHHHHHHTSCTTCEEEEEECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EEEEccHHHHHhhccccCccEEEEcCC-CCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence 23333321 11 134579999986311 1111 112468999999999999999987554
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.98 E-value=0.00071 Score=63.61 Aligned_cols=97 Identities=19% Similarity=0.233 Sum_probs=64.8
Q ss_pred CeeEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhh----hccccchhhccc-cCCCCCCCccchhhccc-ccc
Q 044932 546 KIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVI----YDRGLVGIYHDW-CESFGTYPRSYDLLHAD-HLF 618 (689)
Q Consensus 546 ~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI----~~RGLig~yhdw-ce~f~typrTyDLlHa~-~lf 618 (689)
..+.|+|+++|.|.++..|..... +|+=++-. +-|... -++|+-..++.. -+.|+ +|.+||+|.+. +.|
T Consensus 41 ~~~~iLDiGcGtG~~~~~l~~~~~---~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~-~~~~fD~I~~~~~~~ 116 (251)
T d1wzna1 41 EVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA-FKNEFDAVTMFFSTI 116 (251)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC-CCSCEEEEEECSSGG
T ss_pred CCCEEEEeCCCCCccchhhcccce---EEEEEeeccccccccccccccccccchheehhhhhcc-cccccchHhhhhhhh
Confidence 346899999999999999988753 56655543 333322 234543333311 24443 78999999875 456
Q ss_pred ccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 619 SRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 619 s~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
... +..+ ....|-+|-|+|+|||.+||.
T Consensus 117 ~~~-~~~~-~~~~L~~~~~~LkpgG~lii~ 144 (251)
T d1wzna1 117 MYF-DEED-LRKLFSKVAEALKPGGVFITD 144 (251)
T ss_dssp GGS-CHHH-HHHHHHHHHHHEEEEEEEEEE
T ss_pred hcC-ChHH-HHHHHHHHHHHcCCCcEEEEE
Confidence 554 2334 356789999999999999995
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.97 E-value=0.001 Score=66.58 Aligned_cols=110 Identities=7% Similarity=0.084 Sum_probs=75.5
Q ss_pred hhcccCCCCCCeeEEeecCCcchhHHHHhc-cCCceEEEeccCCCCCch----hhhhccccchhhccccCCCCCCCccch
Q 044932 536 YLTGLGIDWSKIRNVMDMKSIYGGFAAALA-QQKIWVMNVVPVHAPDTL----PVIYDRGLVGIYHDWCESFGTYPRSYD 610 (689)
Q Consensus 536 y~~~l~~~~~~iRNvmDMna~~GgFAAal~-~~~vWVMNvvp~~~~~tL----~vI~~RGLig~yhdwce~f~typrTyD 610 (689)
+...++++.|. .|||+++|.||+|..|. ..++=|.=|... ++.+ ..+...||....+--+.-+.+.+.+||
T Consensus 53 ~~~~l~l~~G~--~VLDiGCG~G~~~~~~a~~~g~~v~git~s--~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~fD 128 (291)
T d1kpia_ 53 ALDKLNLEPGM--TLLDIGCGWGSTMRHAVAEYDVNVIGLTLS--ENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVD 128 (291)
T ss_dssp HHHTTCCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEEEESC--HHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCS
T ss_pred HHHhcCCCCCC--EEEEecCcchHHHHHHHHhcCcceeeccch--HHHHHHHHHHHHhhccchhhhhhhhcccccccccc
Confidence 45567777664 59999999999998775 456543322111 1222 345566887766655566667788999
Q ss_pred hhccccccccccCCcC---C--ccceeeeeccccccCcEEEEeC
Q 044932 611 LLHADHLFSRLKSRCR---Q--PVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 611 LlHa~~lfs~~~~~c~---~--~~~illEmDRILRP~G~~iirD 649 (689)
-|=+-++|-+..+.-. . ...++=++.|+|+|||.++|.+
T Consensus 129 ~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 129 RIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 172 (291)
T ss_dssp EEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred eEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 9988888887654321 0 1457888999999999998863
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=95.97 E-value=0.011 Score=55.26 Aligned_cols=119 Identities=16% Similarity=0.220 Sum_probs=72.5
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcCCCcE---EecCCC--CCC-CCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERGFPAV---VSPLGN--RRL-PFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRGL~~i---~~~~dt--~~L-PFpD~SFDlVhcs 379 (689)
...+++|+.||.|+.+.++++. .|+|+|.+| .++..|..+-.... ...+.. ..+ .+....+|.|+.-
T Consensus 18 ~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~-----~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~D 92 (182)
T d1wg8a2 18 PGGVYVDATLGGAGHARGILERGGRVIGLDQDP-----EAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGILAD 92 (182)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTTCEEEEEESCH-----HHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEEEEE
T ss_pred CCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhh-----hHHHHHhhccccceeEeehHHHHHHHHHHHcCCCccCEEEEE
Confidence 3568999999999999988875 499999876 45666666532221 111110 111 1345689999863
Q ss_pred ccccccc-cc-------HHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEE
Q 044932 380 GCSITWH-AH-------GGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNIL 433 (689)
Q Consensus 380 ~cli~W~-~d-------~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v 433 (689)
.....++ .+ ....|.-...+|+|||.+++..-+.. + ...+..+.+.-.++.+
T Consensus 93 LGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~-E-d~ivk~~~~e~~~k~i 152 (182)
T d1wg8a2 93 LGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSL-E-DRVVKRFLRESGLKVL 152 (182)
T ss_dssp CSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHH-H-HHHHHHHHHHHCSEES
T ss_pred ccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccc-h-hHHHHHHHhhccceec
Confidence 2111111 11 22466777899999999999887643 2 2345566665555443
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=95.82 E-value=0.0011 Score=62.10 Aligned_cols=97 Identities=11% Similarity=0.146 Sum_probs=69.8
Q ss_pred EEeecCCcchhHHHHhcc---CCceEEEeccCCCC-Cchhh----hhccccchhhccccCCCCCCC-ccchhhccccccc
Q 044932 549 NVMDMKSIYGGFAAALAQ---QKIWVMNVVPVHAP-DTLPV----IYDRGLVGIYHDWCESFGTYP-RSYDLLHADHLFS 619 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~---~~vWVMNvvp~~~~-~tL~v----I~~RGLig~yhdwce~f~typ-rTyDLlHa~~lfs 619 (689)
.|+|+++|.|.++.+|.. .+-+ +|+=++-. .-|.. +...++...+|-.|..+..|| ..+|++.+..+|.
T Consensus 42 ~vLDlGCGtG~~~~~l~~~~~~~~~--~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l~ 119 (225)
T d1im8a_ 42 NVYDLGCSRGAATLSARRNINQPNV--KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQ 119 (225)
T ss_dssp EEEEESCTTCHHHHHHHHTCCCSSC--EEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCGG
T ss_pred EEEEeccchhhHHHHHHHhhcCCCC--ceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeecc
Confidence 699999999999887764 2333 35445542 34433 234478888888887776665 6889999988886
Q ss_pred cccCCcCCccceeeeeccccccCcEEEEeC
Q 044932 620 RLKSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 620 ~~~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
.. +.-+ ...+|-+|=|.|+|||.+|+.|
T Consensus 120 ~~-~~~d-~~~~l~~i~~~LkpgG~li~~~ 147 (225)
T d1im8a_ 120 FL-PPED-RIALLTKIYEGLNPNGVLVLSE 147 (225)
T ss_dssp GS-CGGG-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred cc-Chhh-HHHHHHHHHHhCCCCceeeccc
Confidence 54 3334 2568999999999999999975
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=95.53 E-value=0.0059 Score=60.43 Aligned_cols=105 Identities=15% Similarity=0.075 Sum_probs=55.7
Q ss_pred CCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHH-HHHHHHHHcCCCcEEecCCCCCCCCCCCCcceEEeccc--
Q 044932 309 IRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLV-DLAQVALERGFPAVVSPLGNRRLPFPSGVFDAIHCDGC-- 381 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~se-amlq~A~eRGL~~i~~~~dt~~LPFpD~SFDlVhcs~c-- 381 (689)
..+|+|+|||.|+|+.+++.. .|.++++-- +.++ .+.......++.......+... .+...+|+|+|-..
T Consensus 67 ~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~-d~~e~P~~~~~~~~ni~~~~~~~dv~~--l~~~~~D~vlcDm~es 143 (257)
T d2p41a1 67 EGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGG-PGHEEPIPMSTYGWNLVRLQSGVDVFF--IPPERCDTLLCDIGES 143 (257)
T ss_dssp CEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCS-TTSCCCCCCCSTTGGGEEEECSCCTTT--SCCCCCSEEEECCCCC
T ss_pred CCeEEEecCCCChHHHHHHhhcCCCceeEEEecC-ccccCCccccccccccccchhhhhHHh--cCCCcCCEEEeeCCCC
Confidence 357999999999999988865 356666631 1110 0000000001100011111122 34688999998632
Q ss_pred cccccccH---HHHHHHHHhccCCCcEEEEEcCCCchh
Q 044932 382 SITWHAHG---GKLLLEMNRILRPSGYFILSTKHDSIE 416 (689)
Q Consensus 382 li~W~~d~---~~aL~EI~RVLRPGG~fVIsdp~~~le 416 (689)
.-.|.-+. ..+|.=+.+.|+|||.|++-.-.++..
T Consensus 144 s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~ 181 (257)
T d2p41a1 144 SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMS 181 (257)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSH
T ss_pred CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCCh
Confidence 11111111 234555568899999999976555543
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.42 E-value=0.012 Score=59.43 Aligned_cols=100 Identities=17% Similarity=0.073 Sum_probs=61.8
Q ss_pred CCCeEEEECCccchhHHHhhcC----CeEEEEcCCcccHHHHHHHHHHcC---------CCcEEecCCCCC-CCCCCCCc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK----EVLTLTVGLKDDLVDLAQVALERG---------FPAVVSPLGNRR-LPFPSGVF 373 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~----~V~gmDIsp~D~seamlq~A~eRG---------L~~i~~~~dt~~-LPFpD~SF 373 (689)
..++||-||-|.|..+..++.. .|+.++++| ..++.|.+-- -...+...|+.. |--..+.|
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~-----~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~y 180 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDE-----MVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEF 180 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCH-----HHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCE
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccH-----HHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCC
Confidence 5789999999999999888864 377777765 4666666531 011122223211 11135789
Q ss_pred ceEEecccccccc----ccHHHHHHHHHhccCCCcEEEEEcCCC
Q 044932 374 DAIHCDGCSITWH----AHGGKLLLEMNRILRPSGYFILSTKHD 413 (689)
Q Consensus 374 DlVhcs~cli~W~----~d~~~aL~EI~RVLRPGG~fVIsdp~~ 413 (689)
|+|++-.. -+.. -.-..++..+.|.|+|||.|+......
T Consensus 181 DvII~D~~-dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~ 223 (312)
T d2b2ca1 181 DVIITDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQGESV 223 (312)
T ss_dssp EEEEECCC--------------HHHHHHHHEEEEEEEEEECCCT
T ss_pred CEEEEcCC-CCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCCh
Confidence 99986321 1100 112467889999999999999986543
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=95.42 E-value=0.0029 Score=61.84 Aligned_cols=67 Identities=16% Similarity=0.169 Sum_probs=45.7
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCcccHHHHHHHHHHcC--CC-cEEecCCCCCCCCCCCCcceEEec
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLKDDLVDLAQVALERG--FP-AVVSPLGNRRLPFPSGVFDAIHCD 379 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~D~seamlq~A~eRG--L~-~i~~~~dt~~LPFpD~SFDlVhcs 379 (689)
...+||+||||+|.++..|+.. .|+++++++. +++.+.++. .+ ..+...|...++++...++.|++.
T Consensus 29 ~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~-----l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~~~vv~N 100 (245)
T d1yuba_ 29 ETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSH-----LFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRYKIVGN 100 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCS-----SSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEEEEEEE
T ss_pred CCCeEEEECCCccHHHHHHHhhcCceeEeeeccc-----chhhhhhhhhhccchhhhhhhhhccccccceeeeEeee
Confidence 4578999999999999988764 5899998875 333333331 12 234456677777877777766643
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=95.27 E-value=0.0031 Score=59.51 Aligned_cols=114 Identities=15% Similarity=0.194 Sum_probs=70.1
Q ss_pred hHHHHHHHHHhhhcccCCCCCCeeEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhc----cccchhhc--c
Q 044932 525 TRHWKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYD----RGLVGIYH--D 597 (689)
Q Consensus 525 ~~~W~~~v~~~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~----RGLig~yh--d 597 (689)
...|...+.+ ++...+.. -++|||+++|.|.++..|.+... +|+=++.. .-|.+.-. .|+--.++ |
T Consensus 20 y~~~~~~~~~-~~~~~~~~---~~~vLDiGCG~G~~~~~l~~~g~---~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d 92 (246)
T d1y8ca_ 20 YKKWSDFIIE-KCVENNLV---FDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQD 92 (246)
T ss_dssp HHHHHHHHHH-HHHTTTCC---TTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCC
T ss_pred HHHHHHHHHH-HHHHhCCC---CCeEEEEeCcCCHHHHHHHHhCC---ccEeeccchhhhhhccccccccCccceeeccc
Confidence 4557666654 22223333 24699999999999999988763 45555543 33433323 23321222 3
Q ss_pred ccCCCCCCCccchhhccc-cccccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 598 WCESFGTYPRSYDLLHAD-HLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 598 wce~f~typrTyDLlHa~-~lfs~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
+. .|+ .+++||+|=+. +.|....+.-+ +..+|-+|-|.|+|||.+|+.
T Consensus 93 ~~-~~~-~~~~fD~i~~~~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 93 IS-NLN-INRKFDLITCCLDSTNYIIDSDD-LKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp GG-GCC-CSCCEEEEEECTTGGGGCCSHHH-HHHHHHHHHTTEEEEEEEEEE
T ss_pred hh-hhc-ccccccccceeeeeeeccCCHHH-HHHHHHHHHHhCCCCeEEEEE
Confidence 32 243 37899987543 55555544444 355789999999999999974
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=95.15 E-value=0.0022 Score=62.93 Aligned_cols=110 Identities=17% Similarity=0.177 Sum_probs=63.9
Q ss_pred EEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhh----hhccccchhhc--cccCCCCCCCccchhhccccccccc
Q 044932 549 NVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPV----IYDRGLVGIYH--DWCESFGTYPRSYDLLHADHLFSRL 621 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~v----I~~RGLig~yh--dwce~f~typrTyDLlHa~~lfs~~ 621 (689)
.|||+++|.|.++.++..... .|+-++- +.-+.. +...|+-..+. |.-+.+ -..+||+|.|+.++..
T Consensus 123 ~VLDiGcGsG~l~i~aa~~g~---~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~--~~~~fD~V~ani~~~~- 196 (254)
T d2nxca1 123 KVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAAL--PFGPFDLLVANLYAEL- 196 (254)
T ss_dssp EEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHG--GGCCEEEEEEECCHHH-
T ss_pred EEEEcccchhHHHHHHHhcCC---EEEEEECChHHHHHHHHHHHHcCCceeEEeccccccc--cccccchhhhcccccc-
Confidence 699999999999988876542 2333332 122211 11223211111 111222 1358999998755543
Q ss_pred cCCcCCccceeeeeccccccCcEEEEeCc-hhhHHHHHHHHhhcceeEEE
Q 044932 622 KSRCRQPVSIVVEMDRILRPGGWAIVRDK-VEILDPLEGILRSLHWEIRM 670 (689)
Q Consensus 622 ~~~c~~~~~illEmDRILRP~G~~iirD~-~~~l~~v~~i~~~lrW~~~~ 670 (689)
+..++=++-|+|+|||.+|+.+- .+-...|.+.+....|...-
T Consensus 197 ------l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~ 240 (254)
T d2nxca1 197 ------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp ------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEE
T ss_pred ------HHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEE
Confidence 24455678899999999998642 12345666667777776543
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.11 E-value=0.0033 Score=62.77 Aligned_cols=96 Identities=15% Similarity=0.080 Sum_probs=62.5
Q ss_pred EEeecCCcchhHHHHhccCC-ceEEEeccCCC--CCchhhhhccccchh---hccccCCCCCCCccchhhcccccccccc
Q 044932 549 NVMDMKSIYGGFAAALAQQK-IWVMNVVPVHA--PDTLPVIYDRGLVGI---YHDWCESFGTYPRSYDLLHADHLFSRLK 622 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~~-vWVMNvvp~~~--~~tL~vI~~RGLig~---yhdwce~f~typrTyDLlHa~~lfs~~~ 622 (689)
.|||+++|+|.++..+.... --|.-+ -.+. .-....+...|+... .|.-.+.++.-+..+|+|-+.-++....
T Consensus 41 ~VLDlGcGtG~ls~~aa~~Ga~~V~av-d~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~~~ 119 (328)
T d1g6q1_ 41 IVLDVGCGTGILSMFAAKHGAKHVIGV-DMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLL 119 (328)
T ss_dssp EEEEETCTTSHHHHHHHHTCCSEEEEE-ESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBS
T ss_pred EEEEeCCCCCHHHHHHHHhCCCEEEEE-eCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecceeec
Confidence 69999999998876665543 122211 1111 012245566676543 3333445555568999998877776655
Q ss_pred CCcCCccceeeeeccccccCcEEE
Q 044932 623 SRCRQPVSIVVEMDRILRPGGWAI 646 (689)
Q Consensus 623 ~~c~~~~~illEmDRILRP~G~~i 646 (689)
.--. +..++.+++|+|+|||.+|
T Consensus 120 ~e~~-~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 120 YESM-MDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TTCC-HHHHHHHHHHHEEEEEEEE
T ss_pred cchh-HHHHHHHHHhccCCCeEEE
Confidence 5444 4778999999999999987
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.04 E-value=0.0039 Score=61.99 Aligned_cols=98 Identities=15% Similarity=0.098 Sum_probs=61.1
Q ss_pred eEEeecCCcchhHHHHhccCC-ceEEEeccCCCC--Cchhhhhccccch---hhccccCCCCCCCccchhhccccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQK-IWVMNVVPVHAP--DTLPVIYDRGLVG---IYHDWCESFGTYPRSYDLLHADHLFSRL 621 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~-vWVMNvvp~~~~--~tL~vI~~RGLig---~yhdwce~f~typrTyDLlHa~~lfs~~ 621 (689)
.+|||+++|.|.++-.+.... --|. .|-.+.. ...-++-..|+.. +.+.--+.+.+.+..+|+|-+.-+....
T Consensus 35 ~~VLDiGcG~G~ls~~aa~~Ga~~V~-avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~l 113 (316)
T d1oria_ 35 KVVLDVGSGTGILCMFAAKAGARKVI-GIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCL 113 (316)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEE-EEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBTB
T ss_pred CEEEEEecCCcHHHHHHHHhCCCEEE-EEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeeeee
Confidence 459999999998765554432 2222 1221111 1223444556643 3333344556667899999887666655
Q ss_pred cCCcCCccceeeeeccccccCcEEEE
Q 044932 622 KSRCRQPVSIVVEMDRILRPGGWAIV 647 (689)
Q Consensus 622 ~~~c~~~~~illEmDRILRP~G~~ii 647 (689)
.+... +..++-+++|.|+|||.+|-
T Consensus 114 ~~e~~-~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 114 FYESM-LNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp TBTCC-HHHHHHHHHHHEEEEEEEES
T ss_pred ccHHH-HHHHHHHHHhcCCCCeEEEe
Confidence 55555 47788899999999999874
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.02 E-value=0.0028 Score=62.65 Aligned_cols=100 Identities=15% Similarity=0.070 Sum_probs=63.5
Q ss_pred eEEeecCCcchhHHHHhccCC-ceEEEeccCCC-CCchhhhhccccch---hhccccCCCCCCCccchhhcccccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQK-IWVMNVVPVHA-PDTLPVIYDRGLVG---IYHDWCESFGTYPRSYDLLHADHLFSRLK 622 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~-vWVMNvvp~~~-~~tL~vI~~RGLig---~yhdwce~f~typrTyDLlHa~~lfs~~~ 622 (689)
..|||+++|.|.++..+.... --|.-+=+... -..+..+...|+.. +.+.-.+.+..-+..+|+|=+.-+++...
T Consensus 37 ~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~~~ 116 (311)
T d2fyta1 37 KVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLL 116 (311)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBT
T ss_pred CEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeeeeecc
Confidence 359999999999987666543 23322211110 01234555666543 33444455666678999998876666554
Q ss_pred CCcCCccceeeeeccccccCcEEEEe
Q 044932 623 SRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 623 ~~c~~~~~illEmDRILRP~G~~iir 648 (689)
..-. +..++-.++|.|+|||.+|-.
T Consensus 117 ~e~~-~~~~~~a~~~~Lkp~G~iip~ 141 (311)
T d2fyta1 117 FESM-LDSVLYAKNKYLAKGGSVYPD 141 (311)
T ss_dssp TTCH-HHHHHHHHHHHEEEEEEEESC
T ss_pred cccc-cHHHHHHHHhcCCCCcEEecc
Confidence 4433 367788899999999999843
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=94.91 E-value=0.052 Score=57.57 Aligned_cols=156 Identities=10% Similarity=0.070 Sum_probs=81.2
Q ss_pred HHHHHhhcccccCCCCCCeEEEECCccchhHHHhhc----------------------CCeEEEEcCCcccHHHHHHHHH
Q 044932 293 LESIEEMVPDIEWGKNIRVVLEIGSADLSFVASLLA----------------------KEVLTLTVGLKDDLVDLAQVAL 350 (689)
Q Consensus 293 id~L~~~Lp~l~~G~~~R~VLDVGCGtGsfaa~La~----------------------~~V~gmDIsp~D~seamlq~A~ 350 (689)
+++|.+++.. . ...+|+|-.||+|+|...... ..++|+++++....-+.+....
T Consensus 153 v~~mv~ll~~---~-~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l 228 (524)
T d2ar0a1 153 IKTIIHLLKP---Q-PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL 228 (524)
T ss_dssp HHHHHHHHCC---C-TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT
T ss_pred hHhhhhcccC---c-cchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHh
Confidence 4455555431 1 346899999999998654321 2478999887422112222211
Q ss_pred HcCCCcEEecCCCCC----C---CCCCCCcceEEecc--c----------cccccccH-HHHHHHHHhccCCCcEEEEEc
Q 044932 351 ERGFPAVVSPLGNRR----L---PFPSGVFDAIHCDG--C----------SITWHAHG-GKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 351 eRGL~~i~~~~dt~~----L---PFpD~SFDlVhcs~--c----------li~W~~d~-~~aL~EI~RVLRPGG~fVIsd 410 (689)
+|....+...+... + .+....||+|++.- . ......+. -.+|.-+.+.|+|||++++..
T Consensus 229 -~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIl 307 (524)
T d2ar0a1 229 -HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 307 (524)
T ss_dssp -TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -hcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEE
Confidence 23322111111111 1 12346799999851 0 00001112 247788999999999999998
Q ss_pred CCCchh---HHHHHHHH-HHhcceeEEEee-cccc---C-ceeEEEEEeCCC
Q 044932 411 KHDSIE---EEEALTTL-TASICWNILAHK-TDEI---S-EMGVKIYQKPES 453 (689)
Q Consensus 411 p~~~le---~~~~ie~L-a~~l~W~~v~~~-~~~~---g-~~~i~IwqKp~~ 453 (689)
|...+. ....+.+. ++...-..+..- ...+ + ...|++++|...
T Consensus 308 P~~~Lf~~~~~~~iR~~Ll~~~~i~aII~LP~~~F~~t~i~t~Il~l~K~k~ 359 (524)
T d2ar0a1 308 PDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTV 359 (524)
T ss_dssp EHHHHHCCTHHHHHHHHHHHHEEEEEEEECCSSCSSSCSCCEEEEEEEEBCS
T ss_pred ehHHhhhhhhhHHHHHHHHHcCCceEEEECCCCcCCCCCCCeEEEEEECCCC
Confidence 876542 12334444 444333333221 1222 1 345888888543
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.70 E-value=0.0049 Score=58.39 Aligned_cols=139 Identities=10% Similarity=0.079 Sum_probs=76.7
Q ss_pred cCCCCCCeeEEeecCCcchhHHHHhccC--CceEEEeccCCC-CCch----hhhhccccchhhccccCCCCCCCccchhh
Q 044932 540 LGIDWSKIRNVMDMKSIYGGFAAALAQQ--KIWVMNVVPVHA-PDTL----PVIYDRGLVGIYHDWCESFGTYPRSYDLL 612 (689)
Q Consensus 540 l~~~~~~iRNvmDMna~~GgFAAal~~~--~vWVMNvvp~~~-~~tL----~vI~~RGLig~yhdwce~f~typrTyDLl 612 (689)
|.+++|. .|+|++||.|+++..|.+. .-= |+-++- |.-| ...-.|+.|-..+-=+.....|+..+|.
T Consensus 52 l~lkpg~--~VLDlGcG~G~~~~~la~~v~~g~---V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~- 125 (209)
T d1nt2a_ 52 LKLRGDE--RVLYLGAASGTTVSHLADIVDEGI---IYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEK- 125 (209)
T ss_dssp CCCCSSC--EEEEETCTTSHHHHHHHHHTTTSE---EEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCC-
T ss_pred CCCCCCC--EEEEeCCcCCHHHHHHHHhccCCe---EEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccce-
Confidence 5566664 5999999999998888652 111 222222 1212 2233445444433334444556666654
Q ss_pred ccccccccccCCcCCccceeeeeccccccCcEEEEeCc----------hhhHHHHHHH-HhhcceeEEEe-ecCCCceEE
Q 044932 613 HADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDK----------VEILDPLEGI-LRSLHWEIRMT-YAQDKEGIL 680 (689)
Q Consensus 613 Ha~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~----------~~~l~~v~~i-~~~lrW~~~~~-~~~~~E~iL 680 (689)
.+-+|....+... ...+|.|+.|+|+|||.++|-+. ..+...+... ..++...=.+. ..-.++-+|
T Consensus 126 -vd~v~~~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~~gf~i~E~i~L~P~~~~H~~ 203 (209)
T d1nt2a_ 126 -VDLIYQDIAQKNQ-IEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGDFKIVKHGSLMPYHRDHIF 203 (209)
T ss_dssp -EEEEEECCCSTTH-HHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEEECTTTCTTEEE
T ss_pred -EEEEEecccChhh-HHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEEccCCCccCcEE
Confidence 3344554444444 35678999999999999988642 2234333333 34454432222 122346677
Q ss_pred EEEecc
Q 044932 681 CAQKTM 686 (689)
Q Consensus 681 ~~~K~~ 686 (689)
|.-+.|
T Consensus 204 v~~~r~ 209 (209)
T d1nt2a_ 204 IHAYRF 209 (209)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 776654
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.63 E-value=0.0033 Score=61.21 Aligned_cols=97 Identities=18% Similarity=0.327 Sum_probs=61.5
Q ss_pred eeEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhh----hhccccchhhcccc----------CCCCCCCccchh
Q 044932 547 IRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPV----IYDRGLVGIYHDWC----------ESFGTYPRSYDL 611 (689)
Q Consensus 547 iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~v----I~~RGLig~yhdwc----------e~f~typrTyDL 611 (689)
.++|||+++|.|.++..|.+.. + +|+-++-. +-|.+ .-.+++-..++.+. ..+ .+..+||+
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~g-~--~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fd~ 132 (292)
T d1xvaa_ 57 CHRVLDVACGTGVDSIMLVEEG-F--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV-PAGDGFDA 132 (292)
T ss_dssp CCEEEESSCTTSHHHHHHHHTT-C--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS-CCTTCEEE
T ss_pred CCEEEEecCCCcHHHHHHHHcC-C--eeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccccc-CCCCCceE
Confidence 4679999999999999998875 2 56666543 33322 22334433333221 112 24568998
Q ss_pred hccc-cccccccCC----cCCccceeeeeccccccCcEEEEe
Q 044932 612 LHAD-HLFSRLKSR----CRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 612 lHa~-~lfs~~~~~----c~~~~~illEmDRILRP~G~~iir 648 (689)
|-+. ..|....+. -+ +..+|-+|-|+|+|||.+||.
T Consensus 133 v~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 133 VICLGNSFAHLPDSKGDQSE-HRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp EEECSSCGGGSCCTTSSSHH-HHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEecCchhhcCCcccChHH-HHHHHHHHHHHcCcCcEEEEe
Confidence 8764 355544321 12 234789999999999999995
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.32 E-value=0.0029 Score=59.88 Aligned_cols=99 Identities=15% Similarity=0.103 Sum_probs=56.8
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhhcc------ccchhhccccCCCCCCC-ccchhhccccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIYDR------GLVGIYHDWCESFGTYP-RSYDLLHADHLFS 619 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~~R------GLig~yhdwce~f~typ-rTyDLlHa~~lfs 619 (689)
.+|||+++|+|.+|.+|.+.+. -+|+-++- |..|...-.+ ....+.+++..-...+| .+||+|--+.+.+
T Consensus 55 ~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~ 132 (229)
T d1zx0a1 55 GRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL 132 (229)
T ss_dssp EEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred CeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccccc
Confidence 5799999999999999987642 23333332 2233322222 12233445444333344 4677764333333
Q ss_pred cc--cCCcCCccceeeeeccccccCcEEEEeC
Q 044932 620 RL--KSRCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 620 ~~--~~~c~~~~~illEmDRILRP~G~~iirD 649 (689)
.. .+.-. ...++-|+=|+|||||.+++-+
T Consensus 133 ~~~~~~~~~-~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 133 SEETWHTHQ-FNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp BGGGTTTHH-HHHHHHTHHHHEEEEEEEEECC
T ss_pred ccccccccC-HHHHHHHHHHHcCCCcEEEEEe
Confidence 22 22223 2457888999999999998843
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=93.97 E-value=0.014 Score=56.08 Aligned_cols=139 Identities=17% Similarity=0.302 Sum_probs=73.7
Q ss_pred cccCCCCCCeeEEeecCCcchhHHHHhccC-----CceEEEeccCCCCCchhhhhccc-cchhhccccCC--CCCCCccc
Q 044932 538 TGLGIDWSKIRNVMDMKSIYGGFAAALAQQ-----KIWVMNVVPVHAPDTLPVIYDRG-LVGIYHDWCES--FGTYPRSY 609 (689)
Q Consensus 538 ~~l~~~~~~iRNvmDMna~~GgFAAal~~~-----~vWVMNvvp~~~~~tL~vI~~RG-Lig~yhdwce~--f~typrTy 609 (689)
..|++++|. .|||++||.|+|+..|.+. .|+-.-.-|.-........-.|+ ++.+..|-..+ ++...-.+
T Consensus 67 ~~l~i~pG~--~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~v 144 (227)
T d1g8aa_ 67 KNFPIKPGK--SVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKV 144 (227)
T ss_dssp CCCCCCTTC--EEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCE
T ss_pred cccccCCCC--EEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccce
Confidence 445677765 4999999999999999752 24432222211111222333444 33333333221 11222345
Q ss_pred hhhccccccccccCCcCCccceeeeeccccccCcEEEEeC----------chhhHHHHHHHHhhcceeE-EEee--cCC-
Q 044932 610 DLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD----------KVEILDPLEGILRSLHWEI-RMTY--AQD- 675 (689)
Q Consensus 610 DLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD----------~~~~l~~v~~i~~~lrW~~-~~~~--~~~- 675 (689)
|.|+.+ ....-. ...+|-++.|+|+|||.++|-. ...+...++.+... .++. ...+ .-.
T Consensus 145 D~i~~d-----~~~~~~-~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~-gf~iie~i~L~p~~~ 217 (227)
T d1g8aa_ 145 DVIFED-----VAQPTQ-AKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSE-YFEVIERLNLEPYEK 217 (227)
T ss_dssp EEEEEC-----CCSTTH-HHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHT-TSEEEEEEECTTTSS
T ss_pred EEEEEE-----ccccch-HHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHc-CCEEEEEEcCCCCCC
Confidence 655443 211111 2347889999999999999852 23466667776643 3443 2222 111
Q ss_pred CceEEEEEec
Q 044932 676 KEGILCAQKT 685 (689)
Q Consensus 676 ~E~iL~~~K~ 685 (689)
.--+++|+|+
T Consensus 218 ~H~~vv~rK~ 227 (227)
T d1g8aa_ 218 DHALFVVRKT 227 (227)
T ss_dssp SEEEEEEECC
T ss_pred ceEEEEEEeC
Confidence 2356777775
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=93.62 E-value=0.01 Score=56.10 Aligned_cols=115 Identities=10% Similarity=0.065 Sum_probs=69.3
Q ss_pred EEeecCCcchhHHHHhccC-CceEEEeccCCCC-C----chhhhhccccchhhccccCC--CC--CCCccchhhcccccc
Q 044932 549 NVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-D----TLPVIYDRGLVGIYHDWCES--FG--TYPRSYDLLHADHLF 618 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-~----tL~vI~~RGLig~yhdwce~--f~--typrTyDLlHa~~lf 618 (689)
.|+|+++|.|.|++.|... |=+ |++-++-. + .+.-+..+||=.+..-.+.+ |. +-+.++|.|+.....
T Consensus 32 lvLeIGcG~G~~~~~lA~~~p~~--~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~ 109 (204)
T d2fcaa1 32 IHIEVGTGKGQFISGMAKQNPDI--NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD 109 (204)
T ss_dssp EEEEECCTTSHHHHHHHHHCTTS--EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred eEEEEEecCcHHHHHHHHhCCCC--cEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence 5999999999999999653 322 45555432 2 22335566653322211221 11 246778877765544
Q ss_pred cccc----CCcCCccceeeeeccccccCcEEEEe-CchhhHHHHHHHHhhcc
Q 044932 619 SRLK----SRCRQPVSIVVEMDRILRPGGWAIVR-DKVEILDPLEGILRSLH 665 (689)
Q Consensus 619 s~~~----~~c~~~~~illEmDRILRP~G~~iir-D~~~~l~~v~~i~~~lr 665 (689)
-..+ .+.-+-..+|-+|-|+|+|||.++|+ |..++.+.+........
T Consensus 110 P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~ 161 (204)
T d2fcaa1 110 PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYG 161 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCC
Confidence 3222 12322245788999999999999886 77777777766665433
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.61 E-value=0.22 Score=48.97 Aligned_cols=118 Identities=12% Similarity=0.044 Sum_probs=62.1
Q ss_pred CCCeEEEECCccchhHHHhhc----C-CeEEEEcCCcccHHHHHHHHHHcCCCcE-EecCCCCCCCCC---CCCcceEEe
Q 044932 308 NIRVVLEIGSADLSFVASLLA----K-EVLTLTVGLKDDLVDLAQVALERGFPAV-VSPLGNRRLPFP---SGVFDAIHC 378 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~----~-~V~gmDIsp~D~seamlq~A~eRGL~~i-~~~~dt~~LPFp---D~SFDlVhc 378 (689)
.+.+|||++||.|+=+.+|+. . .|+++|+++.-. ..+.+.+.+.|+..+ +...+...++-. ...||.|++
T Consensus 94 ~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~-~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL~ 172 (293)
T d2b9ea1 94 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRL-ASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL 172 (293)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred ccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHH-HHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEee
Confidence 356899999999986555542 2 388999876421 223333444476654 233333333221 257999984
Q ss_pred ----cccc-------cccc--ccH----------HHHHHHHHhccCCCcEEEEEcCCCch-hHHHHHHHHHHh
Q 044932 379 ----DGCS-------ITWH--AHG----------GKLLLEMNRILRPSGYFILSTKHDSI-EEEEALTTLTAS 427 (689)
Q Consensus 379 ----s~cl-------i~W~--~d~----------~~aL~EI~RVLRPGG~fVIsdp~~~l-e~~~~ie~La~~ 427 (689)
+... +.|. ... ..+|.... .|+|||+++.++=.-.. +...-++.+++.
T Consensus 173 DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~ENe~vV~~~L~~ 244 (293)
T d2b9ea1 173 DPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEENEDVVRDALQQ 244 (293)
T ss_dssp CCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGGGTHHHHHHHHTT
T ss_pred cCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChhHhHHHHHHHHHh
Confidence 3210 1121 111 11233333 47999999888744222 333445566654
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=93.53 E-value=0.0085 Score=56.60 Aligned_cols=99 Identities=16% Similarity=0.189 Sum_probs=54.3
Q ss_pred hcccCCCCCCeeEEeecCCcchhHHHHhcc---CC--ceEEEeccCCCCCchhhhhccccchhhccccCCCCCCC--ccc
Q 044932 537 LTGLGIDWSKIRNVMDMKSIYGGFAAALAQ---QK--IWVMNVVPVHAPDTLPVIYDRGLVGIYHDWCESFGTYP--RSY 609 (689)
Q Consensus 537 ~~~l~~~~~~iRNvmDMna~~GgFAAal~~---~~--vWVMNvvp~~~~~tL~vI~~RGLig~yhdwce~f~typ--rTy 609 (689)
+..|+++++. .|||+++|+|.++|.|.. .. |+..-.-|.-....-..+-..|+-.+-.-....+..+| .+|
T Consensus 68 l~~l~l~~g~--~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~f 145 (213)
T d1dl5a1 68 MEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPY 145 (213)
T ss_dssp HHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred HHhhhccccc--eEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccch
Confidence 3456677665 799999999999988853 22 33222211100000011122233222222233334344 579
Q ss_pred hhhccccccccccCCcCCccceeeeeccccccCcEEEE
Q 044932 610 DLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIV 647 (689)
Q Consensus 610 DLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~ii 647 (689)
|.|+..+.+... .-++=|.|+|||.+++
T Consensus 146 D~I~~~~~~~~~----------p~~l~~~LkpGG~lv~ 173 (213)
T d1dl5a1 146 DVIFVTVGVDEV----------PETWFTQLKEGGRVIV 173 (213)
T ss_dssp EEEEECSBBSCC----------CHHHHHHEEEEEEEEE
T ss_pred hhhhhhccHHHh----------HHHHHHhcCCCcEEEE
Confidence 999988765432 2233477999999987
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=93.28 E-value=0.031 Score=52.00 Aligned_cols=72 Identities=8% Similarity=-0.039 Sum_probs=43.8
Q ss_pred CCCCCcceEEecc--c-----------cccccccHHHHHHHHHhccCCCcEEEEEcCCCchhHHHHHHHHHHhcceeEEE
Q 044932 368 FPSGVFDAIHCDG--C-----------SITWHAHGGKLLLEMNRILRPSGYFILSTKHDSIEEEEALTTLTASICWNILA 434 (689)
Q Consensus 368 FpD~SFDlVhcs~--c-----------li~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~le~~~~ie~La~~l~W~~v~ 434 (689)
+|++|+|+|+++- . .-.|.......+.|+.|+|+|||.+++....... ..+...+...+|....
T Consensus 19 lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~~~~---~~~~~~~~~~g~~~~~ 95 (256)
T d1g60a_ 19 VENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFNC---AFICQYLVSKGMIFQN 95 (256)
T ss_dssp SCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHHHH---HHHHHHHHHTTCEEEE
T ss_pred CcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCchhh---hhhhhhhhcccceeee
Confidence 5688999998751 1 0111112346788999999999998876544222 2244455666775432
Q ss_pred eeccccCceeEEEEEeCC
Q 044932 435 HKTDEISEMGVKIYQKPE 452 (689)
Q Consensus 435 ~~~~~~g~~~i~IwqKp~ 452 (689)
..||.|+.
T Consensus 96 ----------~iiW~k~~ 103 (256)
T d1g60a_ 96 ----------WITWDKRD 103 (256)
T ss_dssp ----------EEEECCCC
T ss_pred ----------eeEeeecc
Confidence 35777754
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=92.93 E-value=0.18 Score=44.54 Aligned_cols=92 Identities=14% Similarity=-0.015 Sum_probs=57.6
Q ss_pred CCCeEEEECCc-cchhHHHhh---cCCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCC--------C--CCCCCCc
Q 044932 308 NIRVVLEIGSA-DLSFVASLL---AKEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRR--------L--PFPSGVF 373 (689)
Q Consensus 308 ~~R~VLDVGCG-tGsfaa~La---~~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~--------L--PFpD~SF 373 (689)
...+||=+||| .|.+++.++ ...|+++|.+ +..+++|++.|....+..-.... + .+ ...|
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~-----~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~-g~g~ 99 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARS-----PRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAI-GDLP 99 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHS-SSCC
T ss_pred CCCEEEEEcccccchhhHhhHhhhcccccccchH-----HHHHHHHHHcCCcEEEeccccccccchhhhhhhccc-ccCC
Confidence 34689999998 444554444 3457777765 35788888887655443111100 0 01 2468
Q ss_pred ceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 374 DAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 374 DlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
|+|+-.- .. ...+....++|||||++++...+
T Consensus 100 D~vid~~-g~------~~~~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 100 NVTIDCS-GN------EKCITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp SEEEECS-CC------HHHHHHHHHHSCTTCEEEECSCC
T ss_pred ceeeecC-CC------hHHHHHHHHHHhcCCceEEEecC
Confidence 8887321 11 26788899999999999998644
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.71 E-value=0.0049 Score=59.34 Aligned_cols=125 Identities=13% Similarity=0.182 Sum_probs=72.8
Q ss_pred cccCCCCCCeeEEeecCCcchhHHHHhccC----CceEEEeccCCCCCchhhhhccc-cchhhccccCCCCCCCccchhh
Q 044932 538 TGLGIDWSKIRNVMDMKSIYGGFAAALAQQ----KIWVMNVVPVHAPDTLPVIYDRG-LVGIYHDWCESFGTYPRSYDLL 612 (689)
Q Consensus 538 ~~l~~~~~~iRNvmDMna~~GgFAAal~~~----~vWVMNvvp~~~~~tL~vI~~RG-Lig~yhdwce~f~typrTyDLl 612 (689)
..|.+++|. .|||.+||.|.++..|.+. .|+-+.+-|.-...-......|+ ++.+..|...+....+.++|.+
T Consensus 68 ~~l~ikpG~--~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~ 145 (230)
T d1g8sa_ 68 KVMPIKRDS--KILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVD 145 (230)
T ss_dssp CCCCCCTTC--EEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEE
T ss_pred HhCCCCCCC--EEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeE
Confidence 345566653 4999999999999888752 24544444322111112223333 4455666666554445555543
Q ss_pred ccccccccccCCcCCccceeeeeccccccCcEEEEeC----------chhhHHHHHHHHhhcceeE
Q 044932 613 HADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD----------KVEILDPLEGILRSLHWEI 668 (689)
Q Consensus 613 Ha~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD----------~~~~l~~v~~i~~~lrW~~ 668 (689)
-. |........ ...++.++.|+|+|||.++|-+ ...+..++...++.-..+.
T Consensus 146 ~i---~~~~~~~~~-~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~i 207 (230)
T d1g8sa_ 146 VI---YEDVAQPNQ-AEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKI 207 (230)
T ss_dssp EE---EECCCSTTH-HHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEE
T ss_pred Ee---eccccchHH-HHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEE
Confidence 33 333333334 2557899999999999988863 2235566666665544544
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=92.53 E-value=0.14 Score=47.26 Aligned_cols=95 Identities=15% Similarity=0.051 Sum_probs=59.2
Q ss_pred CCCeEEEECCcc-chhHHHhhc---C-CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCCCC--------CCCCcc
Q 044932 308 NIRVVLEIGSAD-LSFVASLLA---K-EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRLPF--------PSGVFD 374 (689)
Q Consensus 308 ~~R~VLDVGCGt-Gsfaa~La~---~-~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~LPF--------pD~SFD 374 (689)
...+||-+|||. |.+++.++. . .|+++|.++ ..+++|++.|....+. ....++ ....+|
T Consensus 25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~-----~rl~~a~~~Ga~~~~~---~~~~~~~~~i~~~t~g~g~D 96 (195)
T d1kola2 25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP-----ARLAHAKAQGFEIADL---SLDTPLHEQIAALLGEPEVD 96 (195)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH-----HHHHHHHHTTCEEEET---TSSSCHHHHHHHHHSSSCEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccc-----hhhHhhhhccccEEEe---CCCcCHHHHHHHHhCCCCcE
Confidence 357999999998 445544442 2 477787654 5788999888654332 111111 234578
Q ss_pred eEEec-c--cc--cc---ccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 375 AIHCD-G--CS--IT---WHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 375 lVhcs-~--cl--i~---W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
+++-. . +. .+ ........|....+++||||.+++..
T Consensus 97 ~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 97 CAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp EEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred EEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 77632 1 00 00 11123478999999999999999885
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.49 E-value=0.029 Score=50.32 Aligned_cols=93 Identities=15% Similarity=0.099 Sum_probs=57.1
Q ss_pred CCCeEEEECCc-cchhHHHhh---cCCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCC-C-CCCCCCcceEEeccc
Q 044932 308 NIRVVLEIGSA-DLSFVASLL---AKEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRR-L-PFPSGVFDAIHCDGC 381 (689)
Q Consensus 308 ~~R~VLDVGCG-tGsfaa~La---~~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~-L-PFpD~SFDlVhcs~c 381 (689)
...+||-+||| .|.++..++ +..|+++|.++. .++.|++-|....+...+... . .. .+.||+|+..-.
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~-----k~~~a~~lGa~~~i~~~~~~~~~~~~-~~~~d~vi~~~~ 100 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR-----KREDAMKMGADHYIATLEEGDWGEKY-FDTFDLIVVCAS 100 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST-----THHHHHHHTCSEEEEGGGTSCHHHHS-CSCEEEEEECCS
T ss_pred CCCEEEEECCCCcchhHHHHhhhccccccccccchh-----HHHHhhccCCcEEeeccchHHHHHhh-hcccceEEEEec
Confidence 35789999998 555555544 446888887763 567788888665443221100 0 12 357998874311
Q ss_pred cccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 382 SITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 382 li~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
... ...+....++|||||++++...
T Consensus 101 ~~~-----~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 101 SLT-----DIDFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp CST-----TCCTTTGGGGEEEEEEEEECCC
T ss_pred CCc-----cchHHHHHHHhhccceEEEecc
Confidence 111 0234567899999999998753
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=92.35 E-value=0.032 Score=52.55 Aligned_cols=119 Identities=14% Similarity=0.123 Sum_probs=70.0
Q ss_pred eEEeecCCcchhHHHHhccC-CceEEEeccCCCC-----Cchhhhhccccch--hhc-cccCCCCCC-Cccchhhccccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQ-KIWVMNVVPVHAP-----DTLPVIYDRGLVG--IYH-DWCESFGTY-PRSYDLLHADHL 617 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~-~vWVMNvvp~~~~-----~tL~vI~~RGLig--~yh-dwce~f~ty-prTyDLlHa~~l 617 (689)
..|+|+++|.|.|+..|+.. |=. |++-++-. ..+.-+-..||-. ++| |..+-+..+ +.++|.||...-
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~--~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDI--NYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTS--EEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CeEEEEeccCCHHHHHHHHHCCCC--ceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence 36999999999999999642 221 44444432 1223344566532 222 222211122 468888875432
Q ss_pred ccccc-----CCcCCccceeeeeccccccCcEEEEe-CchhhHHHHHHHHhhcceeEE
Q 044932 618 FSRLK-----SRCRQPVSIVVEMDRILRPGGWAIVR-DKVEILDPLEGILRSLHWEIR 669 (689)
Q Consensus 618 fs~~~-----~~c~~~~~illEmDRILRP~G~~iir-D~~~~l~~v~~i~~~lrW~~~ 669 (689)
- .|. +|--+-..+|-++-|+|+|||.++|. |..++...+........|...
T Consensus 111 d-Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~~~ 167 (204)
T d1yzha1 111 D-PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLN 167 (204)
T ss_dssp C-CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred c-cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCCcccc
Confidence 2 221 12222245788899999999999885 777777776666666555543
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=92.23 E-value=0.11 Score=53.23 Aligned_cols=18 Identities=33% Similarity=0.707 Sum_probs=15.1
Q ss_pred CCCCCcceEEecccccccc
Q 044932 368 FPSGVFDAIHCDGCSITWH 386 (689)
Q Consensus 368 FpD~SFDlVhcs~cli~W~ 386 (689)
||++|.+++||+. .+||.
T Consensus 135 fP~~Slh~~~Ss~-alHWL 152 (359)
T d1m6ex_ 135 FPRNTLHFIHSSY-SLMWL 152 (359)
T ss_dssp SCTTCBSCEEEES-CTTBC
T ss_pred CCCCceEEeeehh-hhhhh
Confidence 8999999999874 45785
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.64 E-value=0.14 Score=48.00 Aligned_cols=66 Identities=15% Similarity=0.250 Sum_probs=41.4
Q ss_pred CCCCCcceEEecc---c-------cccccccHHHHHHHHHhccCCCcEEEEEcCCCc------hhHHHHHHHHHHhccee
Q 044932 368 FPSGVFDAIHCDG---C-------SITWHAHGGKLLLEMNRILRPSGYFILSTKHDS------IEEEEALTTLTASICWN 431 (689)
Q Consensus 368 FpD~SFDlVhcs~---c-------li~W~~d~~~aL~EI~RVLRPGG~fVIsdp~~~------le~~~~ie~La~~l~W~ 431 (689)
+||+|+|+|+++- . ...|.......+.|+.|+|+|||.+++...... ......+..+....+|.
T Consensus 19 l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (279)
T d1eg2a_ 19 LPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDLISIISHMRQNSKML 98 (279)
T ss_dssp SCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTBCCHHHHHHHHHHHCCCE
T ss_pred CcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccccccccchhhHHHHHHhccCce
Confidence 6789999998751 1 111222245778999999999999998754321 11223455566666665
Q ss_pred EE
Q 044932 432 IL 433 (689)
Q Consensus 432 ~v 433 (689)
..
T Consensus 99 ~~ 100 (279)
T d1eg2a_ 99 LA 100 (279)
T ss_dssp EE
T ss_pred ee
Confidence 43
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.62 E-value=0.017 Score=54.16 Aligned_cols=117 Identities=11% Similarity=-0.012 Sum_probs=70.3
Q ss_pred EEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhc----------------------ccc-chhh-ccccCCCC
Q 044932 549 NVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYD----------------------RGL-VGIY-HDWCESFG 603 (689)
Q Consensus 549 NvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~----------------------RGL-ig~y-hdwce~f~ 603 (689)
-|||.++|.|-.|..|.+..- +|+=++.. .-+-.... .|. |=.+ .|.-+--+
T Consensus 48 rvLd~GCG~G~~a~~LA~~G~---~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~ 124 (229)
T d2bzga1 48 RVFFPLCGKAVEMKWFADRGH---SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPR 124 (229)
T ss_dssp EEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGG
T ss_pred EEEEeCCCCcHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhccc
Confidence 499999999999999998764 35555543 21111111 000 0000 11111114
Q ss_pred CCCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeCch------------hhHHHHHHHHhhcceeEEEe
Q 044932 604 TYPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKV------------EILDPLEGILRSLHWEIRMT 671 (689)
Q Consensus 604 typrTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~------------~~l~~v~~i~~~lrW~~~~~ 671 (689)
.++.++|+|...++|-.....- ...++-+|-|+|||||.++|-.-. ---+.|+.+... .|++...
T Consensus 125 ~~~~~fd~i~~~~~l~~~~~~~--r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~-~~~i~~l 201 (229)
T d2bzga1 125 TNIGKFDMIWDRGALVAINPGD--RKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK-ICNIRCL 201 (229)
T ss_dssp SCCCCEEEEEESSSTTTSCGGG--HHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTT-TEEEEEE
T ss_pred cccCceeEEEEEEEEEeccchh--hHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcC-CCEEEEE
Confidence 5677899999998887664322 246788999999999986665210 024557777755 4766543
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.15 E-value=0.043 Score=49.87 Aligned_cols=122 Identities=17% Similarity=0.136 Sum_probs=68.6
Q ss_pred hhcccCCCCCCeeEEeecCCcchhHHHHhccCCceEEEeccCCC-CCchhhhh----ccccc---hhhccccCCCCCCCc
Q 044932 536 YLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHA-PDTLPVIY----DRGLV---GIYHDWCESFGTYPR 607 (689)
Q Consensus 536 y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~-~~tL~vI~----~RGLi---g~yhdwce~f~typr 607 (689)
.+..|.+.++. -|+|+++|+|+++.+|...-- .|+-++- ++-+...- ..||- =++|.-...+.+-..
T Consensus 25 il~~l~~~~g~--~VLDiGcGsG~~s~~lA~~~~---~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~ 99 (186)
T d1l3ia_ 25 IMCLAEPGKND--VAVDVGCGTGGVTLELAGRVR---RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIP 99 (186)
T ss_dssp HHHHHCCCTTC--EEEEESCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSC
T ss_pred HHHhcCCCCCC--EEEEEECCeEcccccccccce---EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccC
Confidence 33445666665 499999999999999876421 2333333 23332221 22332 112211111111234
Q ss_pred cchhhccccccccccCCcCCccceeeeeccccccCcEEEEeC-chhhHHHHHHHHhhcceeEE
Q 044932 608 SYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD-KVEILDPLEGILRSLHWEIR 669 (689)
Q Consensus 608 TyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD-~~~~l~~v~~i~~~lrW~~~ 669 (689)
.||+|=..+.. -. +..++-++-+.|||||++++-. ..+-+..+...+....|+..
T Consensus 100 ~~D~v~~~~~~------~~-~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~~~ 155 (186)
T d1l3ia_ 100 DIDIAVVGGSG------GE-LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVN 155 (186)
T ss_dssp CEEEEEESCCT------TC-HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCE
T ss_pred CcCEEEEeCcc------cc-chHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCCeE
Confidence 66666433321 12 2567888899999999998875 34556667777777666544
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=90.05 E-value=0.18 Score=45.24 Aligned_cols=90 Identities=17% Similarity=0.169 Sum_probs=56.4
Q ss_pred CCCeEEEECCcc-chhHHHhhc---C-CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCC---------CCCCCCCCCc
Q 044932 308 NIRVVLEIGSAD-LSFVASLLA---K-EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGN---------RRLPFPSGVF 373 (689)
Q Consensus 308 ~~R~VLDVGCGt-Gsfaa~La~---~-~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt---------~~LPFpD~SF 373 (689)
.+.+||-+|||. |.++..++. . .|+++|.++ ..++.|++.|....+...+. .+++ ....|
T Consensus 28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~-----~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~-~~~g~ 101 (182)
T d1vj0a2 28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP-----NRLKLAEEIGADLTLNRRETSVEERRKAIMDIT-HGRGA 101 (182)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH-----HHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHT-TTSCE
T ss_pred CCCEEEEECCCccchhheeccccccccccccccccc-----ccccccccccceEEEeccccchHHHHHHHHHhh-CCCCc
Confidence 347899999983 555555543 2 477887654 56788888876544322111 1111 12458
Q ss_pred ceEEeccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 374 DAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 374 DlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
|+|+..-.. . ..+....++|+|||.+++..
T Consensus 102 Dvvid~vG~-~------~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 102 DFILEATGD-S------RALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp EEEEECSSC-T------THHHHHHHHEEEEEEEEECC
T ss_pred eEEeecCCc-h------hHHHHHHHHhcCCCEEEEEe
Confidence 998743111 1 46788899999999998874
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=90.04 E-value=0.16 Score=49.26 Aligned_cols=31 Identities=10% Similarity=0.210 Sum_probs=26.8
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCC
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGL 338 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp 338 (689)
....||+||||+|.++..|++. .|+++++++
T Consensus 21 ~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~ 53 (252)
T d1qyra_ 21 KGQAMVEIGPGLAALTEPVGERLDQLTVIELDR 53 (252)
T ss_dssp TTCCEEEECCTTTTTHHHHHTTCSCEEEECCCH
T ss_pred CCCEEEEECCCchHHHHHHHccCCceEEEEecc
Confidence 4578999999999999999875 589999875
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=89.70 E-value=0.037 Score=53.96 Aligned_cols=110 Identities=20% Similarity=0.243 Sum_probs=62.9
Q ss_pred hcccCCCCCCeeEEeecCCcchhHHHHhcc---CCceEEEeccCCCC-Cchhhhhcc----ccch----hhccccCCCCC
Q 044932 537 LTGLGIDWSKIRNVMDMKSIYGGFAAALAQ---QKIWVMNVVPVHAP-DTLPVIYDR----GLVG----IYHDWCESFGT 604 (689)
Q Consensus 537 ~~~l~~~~~~iRNvmDMna~~GgFAAal~~---~~vWVMNvvp~~~~-~tL~vI~~R----GLig----~yhdwce~f~t 604 (689)
+..+++.+|. .|+|.++|.|+++++|.. ..-= |.-++-. .-+.+..++ |..+ ...|.++.+
T Consensus 78 i~~l~i~pG~--rVLEiG~GsG~lt~~la~~v~~~g~---V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~-- 150 (250)
T d1yb2a1 78 IMRCGLRPGM--DILEVGVGSGNMSSYILYALNGKGT---LTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI-- 150 (250)
T ss_dssp ---CCCCTTC--EEEEECCTTSHHHHHHHHHHTTSSE---EEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC--
T ss_pred HHHcCCCCcC--EEEEeeeeCcHHHHHHHHHhCCCcE---EEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccc--
Confidence 3456777774 599999999999888763 2111 2222221 223222221 2211 334677765
Q ss_pred CCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEeCchhhHHHHHHHHhhc
Q 044932 605 YPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVEILDPLEGILRSL 664 (689)
Q Consensus 605 yprTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~~~l~~v~~i~~~l 664 (689)
...+||.|..+ +-. ...+|=++-|+|||||.+++- ...++.+.+++..|
T Consensus 151 ~~~~fD~V~ld-~p~--------p~~~l~~~~~~LKpGG~lv~~--~P~i~Qv~~~~~~l 199 (250)
T d1yb2a1 151 SDQMYDAVIAD-IPD--------PWNHVQKIASMMKPGSVATFY--LPNFDQSEKTVLSL 199 (250)
T ss_dssp CSCCEEEEEEC-CSC--------GGGSHHHHHHTEEEEEEEEEE--ESSHHHHHHHHHHS
T ss_pred ccceeeeeeec-CCc--------hHHHHHHHHHhcCCCceEEEE--eCCcChHHHHHHHH
Confidence 46789988643 111 134678899999999999874 22345555555444
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=89.22 E-value=0.17 Score=51.86 Aligned_cols=93 Identities=15% Similarity=0.043 Sum_probs=58.0
Q ss_pred CCeEEEECCccchhHHHhh-cC---CeEEEEcCCcccHHHHHHHHHH----cCCCcE----------------EecCCCC
Q 044932 309 IRVVLEIGSADLSFVASLL-AK---EVLTLTVGLKDDLVDLAQVALE----RGFPAV----------------VSPLGNR 364 (689)
Q Consensus 309 ~R~VLDVGCGtGsfaa~La-~~---~V~gmDIsp~D~seamlq~A~e----RGL~~i----------------~~~~dt~ 364 (689)
..+|||+.||+|.++.+.+ +. .|++.|+++. .++.+.+ .++... ....|+.
T Consensus 46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~-----A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~ 120 (375)
T d2dula1 46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISED-----AYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDAN 120 (375)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHH-----HHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHH
T ss_pred CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHH-----HHHHHHHHHHhcCccccccccccccccccceeEeehhhhh
Confidence 4689999999999998544 22 4888998873 3333332 233211 1112211
Q ss_pred CCCC-CCCCcceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcC
Q 044932 365 RLPF-PSGVFDAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTK 411 (689)
Q Consensus 365 ~LPF-pD~SFDlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp 411 (689)
.+.. ....||+|..-- + ..+..+|.-..|.++.||++.++.+
T Consensus 121 ~~~~~~~~~fDvIDiDP----f-Gs~~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 121 RLMAERHRYFHFIDLDP----F-GSPMEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp HHHHHSTTCEEEEEECC----S-SCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhhHhhcCcCCcccCCC----C-CCcHHHHHHHHHHhccCCEEEEEec
Confidence 1111 135699997642 1 1334688899999999999999864
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=88.89 E-value=0.19 Score=49.41 Aligned_cols=149 Identities=11% Similarity=0.157 Sum_probs=85.7
Q ss_pred hhhHHHHHHHHHhhhcccCCCCCCeeEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhh----hhcccc---chh
Q 044932 523 SDTRHWKAIVDRSYLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPV----IYDRGL---VGI 594 (689)
Q Consensus 523 ~D~~~W~~~v~~~y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~v----I~~RGL---ig~ 594 (689)
.||+.+-..+-+ +... .....|+|+.+|.|..+.++...+=+ +|+-++-. ..|.+ +-.-|+ +-+
T Consensus 93 peTE~lv~~~~~-~~~~-----~~~~~vld~g~GsG~i~~~la~~~~~--~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i 164 (271)
T d1nv8a_ 93 PETEELVELALE-LIRK-----YGIKTVADIGTGSGAIGVSVAKFSDA--IVFATDVSSKAVEIARKNAERHGVSDRFFV 164 (271)
T ss_dssp TTHHHHHHHHHH-HHHH-----HTCCEEEEESCTTSHHHHHHHHHSSC--EEEEEESCHHHHHHHHHHHHHTTCTTSEEE
T ss_pred hhhhhhhhhhhh-hhcc-----ccccEEEEeeeeeehhhhhhhhcccc--eeeechhhhhHHHHHHHHHHHcCCCceeEE
Confidence 456777776654 3221 12456999999999888877654422 23333321 22211 111233 223
Q ss_pred hc-cccCCCCCCCccchhhcccccc-------cc----------ccCCcCC--ccceeeeeccccccCcEEEEeCchhhH
Q 044932 595 YH-DWCESFGTYPRSYDLLHADHLF-------SR----------LKSRCRQ--PVSIVVEMDRILRPGGWAIVRDKVEIL 654 (689)
Q Consensus 595 yh-dwce~f~typrTyDLlHa~~lf-------s~----------~~~~c~~--~~~illEmDRILRP~G~~iirD~~~~l 654 (689)
++ ||-++++...-.||||=++==. .. ..+.-.+ +..| +-++|+|+|++++-=..+--
T Consensus 165 ~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i---~~~~L~~~G~l~~Eig~~Q~ 241 (271)
T d1nv8a_ 165 RKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREF---FGRYDTSGKIVLMEIGEDQV 241 (271)
T ss_dssp EESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHH---HHHCCCTTCEEEEECCTTCH
T ss_pred eecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHH---HHHhcCCCCEEEEEECHHHH
Confidence 33 5666655455678987655211 10 0011111 1112 35789999999997555556
Q ss_pred HHHHHHHhhcceeEEEeecCCCceEEEEEec
Q 044932 655 DPLEGILRSLHWEIRMTYAQDKEGILCAQKT 685 (689)
Q Consensus 655 ~~v~~i~~~lrW~~~~~~~~~~E~iL~~~K~ 685 (689)
+.|++++....| ..|-.+.+++++++|+
T Consensus 242 ~~v~~l~~~~g~---~kDl~g~~R~~~~~k~ 269 (271)
T d1nv8a_ 242 EELKKIVSDTVF---LKDSAGKYRFLLLNRR 269 (271)
T ss_dssp HHHTTTSTTCEE---EECTTSSEEEEEEECC
T ss_pred HHHHHHHHhCCE---EeccCCCcEEEEEEEc
Confidence 778888877766 4577788999999986
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=88.73 E-value=0.03 Score=54.05 Aligned_cols=91 Identities=18% Similarity=0.298 Sum_probs=63.0
Q ss_pred CCCeeEEeecCCcchhHHHHhccC----CceEEEeccCCCCCchhhhhccc----cchhhccccCCCCCCCccchhhccc
Q 044932 544 WSKIRNVMDMKSIYGGFAAALAQQ----KIWVMNVVPVHAPDTLPVIYDRG----LVGIYHDWCESFGTYPRSYDLLHAD 615 (689)
Q Consensus 544 ~~~iRNvmDMna~~GgFAAal~~~----~vWVMNvvp~~~~~tL~vI~~RG----Lig~yhdwce~f~typrTyDLlHa~ 615 (689)
++.++.|+|.++|.|.++++|.+. .+.|+.. | .+|-..+ +--+-+|. |...| ..|++...
T Consensus 79 f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-----p---~vi~~~~~~~ri~~~~gd~---~~~~p-~~D~~~l~ 146 (244)
T d1fp1d2 79 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-----P---QVIENAPPLSGIEHVGGDM---FASVP-QGDAMILK 146 (244)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-----H---HHHTTCCCCTTEEEEECCT---TTCCC-CEEEEEEE
T ss_pred ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-----h---hhhhccCCCCCeEEecCCc---ccccc-cceEEEEe
Confidence 467999999999999999999742 2344432 2 1222222 11222443 44456 56999999
Q ss_pred cccccccC-CcCCccceeeeeccccccCcEEEEeC
Q 044932 616 HLFSRLKS-RCRQPVSIVVEMDRILRPGGWAIVRD 649 (689)
Q Consensus 616 ~lfs~~~~-~c~~~~~illEmDRILRP~G~~iirD 649 (689)
++|-.|.+ .|. .||-.+=+.|+|||.++|-|
T Consensus 147 ~vLh~~~de~~~---~iL~~~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 147 AVCHNWSDEKCI---EFLSNCHKALSPNGKVIIVE 178 (244)
T ss_dssp SSGGGSCHHHHH---HHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhhCCHHHHH---HHHHHHHHHcCCCcEEEEEE
Confidence 99999875 455 37888889999999999876
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.12 E-value=0.053 Score=51.64 Aligned_cols=128 Identities=20% Similarity=0.165 Sum_probs=74.3
Q ss_pred CCeeEEeecCCcchhHHHHhccC---CceEEEeccCCCC-Cc----hhhhhccccch---hh-ccccCCCCC-----CCc
Q 044932 545 SKIRNVMDMKSIYGGFAAALAQQ---KIWVMNVVPVHAP-DT----LPVIYDRGLVG---IY-HDWCESFGT-----YPR 607 (689)
Q Consensus 545 ~~iRNvmDMna~~GgFAAal~~~---~vWVMNvvp~~~~-~t----L~vI~~RGLig---~y-hdwce~f~t-----ypr 607 (689)
..-+||+++++++|-=|++|..- +-= |+-++.. .. ...+-.-|+-- +. -|-.+.++. .+.
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~---i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~ 134 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPADGR---VVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAG 134 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCE---EEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTT
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCCCce---EEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccC
Confidence 45789999999999777777531 111 2222221 11 12222223211 11 122333322 367
Q ss_pred cchhhccccccccccCCcCCccceeeeeccccccCcEEEEeCchh----------------hHHHHHHHHhhcceeEEEe
Q 044932 608 SYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRDKVE----------------ILDPLEGILRSLHWEIRMT 671 (689)
Q Consensus 608 TyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD~~~----------------~l~~v~~i~~~lrW~~~~~ 671 (689)
+||||..++--+.|. +.+-.+=+.|||||.+|++|-.- +-+-.+.|...-+|.+.+.
T Consensus 135 ~fD~ifiD~dk~~y~-------~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~ll 207 (219)
T d2avda1 135 TFDVAVVDADKENCS-------AYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLL 207 (219)
T ss_dssp CEEEEEECSCSTTHH-------HHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred CccEEEEeCCHHHHH-------HHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 899999887655542 22233348999999999987421 2233455667889998776
Q ss_pred ecCCCceEEEEEe
Q 044932 672 YAQDKEGILCAQK 684 (689)
Q Consensus 672 ~~~~~E~iL~~~K 684 (689)
-- .++|++|+|
T Consensus 208 Pi--gdGl~ia~K 218 (219)
T d2avda1 208 PL--GDGLTLAFK 218 (219)
T ss_dssp CS--TTCEEEEEE
T ss_pred ec--CCeeEEEEe
Confidence 22 357999998
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=87.97 E-value=0.022 Score=50.13 Aligned_cols=106 Identities=10% Similarity=0.014 Sum_probs=59.5
Q ss_pred hhcccCCCCCCeeEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhhhhcc----------ccc----hhhcc--c
Q 044932 536 YLTGLGIDWSKIRNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPVIYDR----------GLV----GIYHD--W 598 (689)
Q Consensus 536 y~~~l~~~~~~iRNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~vI~~R----------GLi----g~yhd--w 598 (689)
|+..|.+.++. =|||+++|.|.+|..|.++..=| +=++-. +-|...-+| +-. +...+ .
T Consensus 12 ~~~~l~~~~~~--rvLd~GCG~G~~a~~la~~G~~V---~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (201)
T d1pjza_ 12 YWSSLNVVPGA--RVLVPLCGKSQDMSWLSGQGYHV---VGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC 86 (201)
T ss_dssp HHHHHCCCTTC--EEEETTTCCSHHHHHHHHHCCEE---EEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred HHHHcCCCCCC--EEEEecCcCCHHHHHHHHcCCce---EeecccHHHHHHHHHHhccccchhhhhhhhhccccccceec
Confidence 34445555543 49999999999999998776322 222211 222211111 100 01100 1
Q ss_pred cCCCCCCC---ccchhhccccccccccCCcCCccceeeeeccccccCcEEEEe
Q 044932 599 CESFGTYP---RSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVR 648 (689)
Q Consensus 599 ce~f~typ---rTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iir 648 (689)
+..+...| ..+|+|...++|..... -. ...++-+|-|.|+|||.+++.
T Consensus 87 ~d~~~l~~~~~~~~D~i~~~~~l~~l~~-~~-~~~~~~~i~~~LkpgG~l~l~ 137 (201)
T d1pjza_ 87 GDFFALTARDIGHCAAFYDRAAMIALPA-DM-RERYVQHLEALMPQACSGLLI 137 (201)
T ss_dssp ECCSSSTHHHHHSEEEEEEESCGGGSCH-HH-HHHHHHHHHHHSCSEEEEEEE
T ss_pred ccccccccccccceeEEEEEeeeEecch-hh-hHHHHHHHHHhcCCCcEEEEE
Confidence 22222222 46899888888765443 12 134677899999999988775
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.48 E-value=0.019 Score=54.41 Aligned_cols=117 Identities=20% Similarity=0.233 Sum_probs=64.6
Q ss_pred CeeEEeecCCcchhHHHHhcc---CCceEE--EeccCCCCCchhhhhccccch---hhc-cccCCCCC-----CCccchh
Q 044932 546 KIRNVMDMKSIYGGFAAALAQ---QKIWVM--NVVPVHAPDTLPVIYDRGLVG---IYH-DWCESFGT-----YPRSYDL 611 (689)
Q Consensus 546 ~iRNvmDMna~~GgFAAal~~---~~vWVM--Nvvp~~~~~tL~vI~~RGLig---~yh-dwce~f~t-----yprTyDL 611 (689)
+-++|+++++++|..|.+|.. ....|. =+-|......-..|-.-||-. +++ |..+.++. ...+||+
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ 135 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 135 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence 467999999999988887754 222322 111111111112233345422 111 22233332 2357899
Q ss_pred hccccccccccCCcCCccceeeeeccccccCcEEEEeC-----chhhHHHHHHHHhhcceeEEE
Q 044932 612 LHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVRD-----KVEILDPLEGILRSLHWEIRM 670 (689)
Q Consensus 612 lHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iirD-----~~~~l~~v~~i~~~lrW~~~~ 670 (689)
|+.+|-.+.+. ....+++.=|+|||||.+|++| ..+++..|+. .=+|.+..
T Consensus 136 ifiD~~~~~~~-----~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~~~~vr~---~~~~~~~~ 191 (214)
T d2cl5a1 136 VFLDHWKDRYL-----PDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRG---SSSFECTH 191 (214)
T ss_dssp EEECSCGGGHH-----HHHHHHHHTTCEEEEEEEEESCCCCCCCHHHHHHHHH---CTTEEEEE
T ss_pred eeecccccccc-----cHHHHHHHhCccCCCcEEEEeCcCCCCChHHHHHHhc---cCceeehh
Confidence 98876544432 1234566779999999998887 3556666654 44666554
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=87.38 E-value=0.4 Score=43.14 Aligned_cols=89 Identities=12% Similarity=0.067 Sum_probs=56.3
Q ss_pred CCeEEEECCcc-chhHHHhhc----CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCC------CCCCCCCCCcceEE
Q 044932 309 IRVVLEIGSAD-LSFVASLLA----KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGN------RRLPFPSGVFDAIH 377 (689)
Q Consensus 309 ~R~VLDVGCGt-Gsfaa~La~----~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt------~~LPFpD~SFDlVh 377 (689)
..+||=+|||. |.++..++. ..|+++|.++ ..++.|++-|....+..-+. ..+ ....-||+|+
T Consensus 28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~-----~r~~~a~~lGa~~~i~~~~~~~~~~v~~~-t~g~G~D~vi 101 (174)
T d1jqba2 28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP-----ICVEAAKFYGATDILNYKNGHIEDQVMKL-TNGKGVDRVI 101 (174)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH-----HHHHHHHHHTCSEEECGGGSCHHHHHHHH-TTTSCEEEEE
T ss_pred CCEEEEEcCCcchhhhhhhhhcccccccccccchh-----hhHHHHHhhCccccccccchhHHHHHHHH-hhccCcceEE
Confidence 45788899986 666655553 2588888653 56788888886544321110 011 1224599887
Q ss_pred eccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
-.-.. . ..+.+..++|||+|.+++..
T Consensus 102 d~~g~-~------~~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 102 MAGGG-S------ETLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp ECSSC-T------THHHHHHHHEEEEEEEEECC
T ss_pred EccCC-H------HHHHHHHHHHhcCCEEEEEe
Confidence 43111 1 46788889999999999975
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.02 E-value=0.54 Score=41.61 Aligned_cols=90 Identities=14% Similarity=0.020 Sum_probs=56.9
Q ss_pred CCCeEEEECC--ccchhHHHhhc---CCeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCC---CCC--CCCCCCcceEE
Q 044932 308 NIRVVLEIGS--ADLSFVASLLA---KEVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGN---RRL--PFPSGVFDAIH 377 (689)
Q Consensus 308 ~~R~VLDVGC--GtGsfaa~La~---~~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt---~~L--PFpD~SFDlVh 377 (689)
+..+||-.|+ |.|.++..++. ..|++++-+ +..++.+++.|...++..-+. +.+ -...+.||+|+
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~-----~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~ 102 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGT-----EEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIII 102 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEE
T ss_pred CCCEEEEEeccccccccccccccccCccccccccc-----ccccccccccCcccccccccccHHHHhhhhhccCCceEEe
Confidence 4578999997 45555555553 356666543 346778888887655421110 000 02346799998
Q ss_pred eccccccccccHHHHHHHHHhccCCCcEEEEEc
Q 044932 378 CDGCSITWHAHGGKLLLEMNRILRPSGYFILST 410 (689)
Q Consensus 378 cs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsd 410 (689)
..- ....+....++|+|+|.+++..
T Consensus 103 d~~--------g~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 103 EML--------ANVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp ESC--------HHHHHHHHHHHEEEEEEEEECC
T ss_pred ecc--------cHHHHHHHHhccCCCCEEEEEe
Confidence 642 1257888899999999999864
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=86.98 E-value=0.58 Score=42.18 Aligned_cols=92 Identities=10% Similarity=-0.030 Sum_probs=58.9
Q ss_pred CCCeEEEECCcc-chhHHHhhc---C-CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCC------CCCCCCcceE
Q 044932 308 NIRVVLEIGSAD-LSFVASLLA---K-EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRL------PFPSGVFDAI 376 (689)
Q Consensus 308 ~~R~VLDVGCGt-Gsfaa~La~---~-~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~L------PFpD~SFDlV 376 (689)
...+||=+|||. |.++..++. . .|+++|.++ ..+++|++-|....+........ -...+-||+|
T Consensus 28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~-----~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~v 102 (174)
T d1e3ia2 28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDING-----EKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYS 102 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG-----GGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEE
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccch-----HHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEE
Confidence 357899999997 555555443 2 477777765 36788888887655431111000 0123568888
Q ss_pred Ee-ccccccccccHHHHHHHHHhccCCC-cEEEEEcCC
Q 044932 377 HC-DGCSITWHAHGGKLLLEMNRILRPS-GYFILSTKH 412 (689)
Q Consensus 377 hc-s~cli~W~~d~~~aL~EI~RVLRPG-G~fVIsdp~ 412 (689)
+- +. . ..++.+..+.|+|| |.+++...+
T Consensus 103 ie~~G--~------~~~~~~a~~~~~~g~G~~v~vG~~ 132 (174)
T d1e3ia2 103 LDCAG--T------AQTLKAAVDCTVLGWGSCTVVGAK 132 (174)
T ss_dssp EESSC--C------HHHHHHHHHTBCTTTCEEEECCCS
T ss_pred EEecc--c------chHHHHHHHHhhcCCeEEEecCCC
Confidence 73 22 1 26899999999996 999987644
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.94 E-value=0.63 Score=45.65 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=26.9
Q ss_pred CCCeEEEECCccchhHHHhhcC--CeEEEEcCCc
Q 044932 308 NIRVVLEIGSADLSFVASLLAK--EVLTLTVGLK 339 (689)
Q Consensus 308 ~~R~VLDVGCGtGsfaa~La~~--~V~gmDIsp~ 339 (689)
...+||+||+|+|.++..|+.. .|+++.+++.
T Consensus 21 ~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~ 54 (278)
T d1zq9a1 21 PTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPR 54 (278)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHH
T ss_pred CCCEEEEECCCchHHHHHHHhcCCcEEEEEEccc
Confidence 4578999999999999999864 5899998763
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.02 E-value=3 Score=36.35 Aligned_cols=91 Identities=12% Similarity=-0.011 Sum_probs=58.4
Q ss_pred CCCeEEEECCccchh-HHHhh---cC-CeEEEEcCCcccHHHHHHHHHHcCCCcEEecCCCCCC---------CCCCCCc
Q 044932 308 NIRVVLEIGSADLSF-VASLL---AK-EVLTLTVGLKDDLVDLAQVALERGFPAVVSPLGNRRL---------PFPSGVF 373 (689)
Q Consensus 308 ~~R~VLDVGCGtGsf-aa~La---~~-~V~gmDIsp~D~seamlq~A~eRGL~~i~~~~dt~~L---------PFpD~SF 373 (689)
...+||=+|||..++ ++.++ .. .|+++|.+ +..+++|++.|....+..... .. .+ ...|
T Consensus 26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~-----~~rl~~a~~~Ga~~~~~~~~~-~~~~~~~~~~~~~-g~g~ 98 (171)
T d1pl8a2 26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLS-----ATRLSKAKEIGADLVLQISKE-SPQEIARKVEGQL-GCKP 98 (171)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC-----HHHHHHHHHTTCSEEEECSSC-CHHHHHHHHHHHH-TSCC
T ss_pred CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCC-----HHHHHHHHHhCCccccccccc-ccccccccccccC-CCCc
Confidence 346899999987654 33333 33 57888865 467888888887654432111 10 01 2468
Q ss_pred ceEEeccccccccccHHHHHHHHHhccCCCcEEEEEcCC
Q 044932 374 DAIHCDGCSITWHAHGGKLLLEMNRILRPSGYFILSTKH 412 (689)
Q Consensus 374 DlVhcs~cli~W~~d~~~aL~EI~RVLRPGG~fVIsdp~ 412 (689)
|+|+..-. . ...+......|||||++++...+
T Consensus 99 Dvvid~~G-~------~~~~~~a~~~~~~gG~iv~~G~~ 130 (171)
T d1pl8a2 99 EVTIECTG-A------EASIQAGIYATRSGGTLVLVGLG 130 (171)
T ss_dssp SEEEECSC-C------HHHHHHHHHHSCTTCEEEECSCC
T ss_pred eEEEeccC-C------chhHHHHHHHhcCCCEEEEEecC
Confidence 98874321 1 26788899999999999998643
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=82.10 E-value=0.079 Score=52.81 Aligned_cols=120 Identities=21% Similarity=0.218 Sum_probs=68.9
Q ss_pred eEEeecCCcchhHHHHhccCCceEEEeccCCCC-Cchhh----hhccccc------hhhccccCCCCCCCccchhhcccc
Q 044932 548 RNVMDMKSIYGGFAAALAQQKIWVMNVVPVHAP-DTLPV----IYDRGLV------GIYHDWCESFGTYPRSYDLLHADH 616 (689)
Q Consensus 548 RNvmDMna~~GgFAAal~~~~vWVMNvvp~~~~-~tL~v----I~~RGLi------g~yhdwce~f~typrTyDLlHa~~ 616 (689)
+.|+|+.||.|||+.+|.... ..|+-++.. ..|.. ...-||- +---+|.+.+.....+||+|-.+-
T Consensus 147 ~rVLDl~~gtG~~s~~~a~g~---~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp 223 (318)
T d1wxxa2 147 ERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 223 (318)
T ss_dssp EEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeeeccCCCCcHHHHHHHhcC---CcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence 579999999999998886432 234444432 22221 1122331 111233444445567899987653
Q ss_pred c-cccccC-----CcCCccceeeeeccccccCcEEEEe------CchhhHHHHHHHHhhcceeEEEe
Q 044932 617 L-FSRLKS-----RCRQPVSIVVEMDRILRPGGWAIVR------DKVEILDPLEGILRSLHWEIRMT 671 (689)
Q Consensus 617 l-fs~~~~-----~c~~~~~illEmDRILRP~G~~iir------D~~~~l~~v~~i~~~lrW~~~~~ 671 (689)
= |+.-+. ... ...|+-.+=++|+|||.+++- +..++...|...+..-+.+.++.
T Consensus 224 P~~~~~~~~~~~~~~~-~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~~~~ 289 (318)
T d1wxxa2 224 PAFAKGKKDVERAYRA-YKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVV 289 (318)
T ss_dssp CCSCCSTTSHHHHHHH-HHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CccccchHHHHHHHHH-HHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCCEEEE
Confidence 2 111110 011 134677778899999999995 33446666666666666666554
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=80.92 E-value=0.084 Score=51.54 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=61.4
Q ss_pred hcccCCCCCCeeEEeecCCcchhHHHHhcc---CCceEEEeccCCCC-Cchhh----hhccccchhh----ccccCCCCC
Q 044932 537 LTGLGIDWSKIRNVMDMKSIYGGFAAALAQ---QKIWVMNVVPVHAP-DTLPV----IYDRGLVGIY----HDWCESFGT 604 (689)
Q Consensus 537 ~~~l~~~~~~iRNvmDMna~~GgFAAal~~---~~vWVMNvvp~~~~-~tL~v----I~~RGLig~y----hdwce~f~t 604 (689)
+..|++.+|. .|||+++|.|+++++|.. ..-= |+-++-. ..+.. +-.-|+.... .|-++.|
T Consensus 96 i~~l~i~pG~--~VLDiG~GsG~lt~~lA~~~~~~G~---V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~-- 168 (266)
T d1o54a_ 96 AMMLDVKEGD--RIIDTGVGSGAMCAVLARAVGSSGK---VFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF-- 168 (266)
T ss_dssp HHHTTCCTTC--EEEEECCTTSHHHHHHHHHTTTTCE---EEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC--
T ss_pred HHhhCCCCCC--EEEECCCCCCHHHHHHHHHhCCCcE---EEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccc--
Confidence 3456677664 599999999999988853 2211 2222221 12211 2222443221 2333333
Q ss_pred CCccchhhccccccccccCCcCCccceeeeeccccccCcEEEEe-CchhhHHHHHHHHhhccee
Q 044932 605 YPRSYDLLHADHLFSRLKSRCRQPVSIVVEMDRILRPGGWAIVR-DKVEILDPLEGILRSLHWE 667 (689)
Q Consensus 605 yprTyDLlHa~~lfs~~~~~c~~~~~illEmDRILRP~G~~iir-D~~~~l~~v~~i~~~lrW~ 667 (689)
....+|.|.. . -.+ ...+|-++-|+|||||.+++= =..+-+.++-..++...|.
T Consensus 169 ~~~~~D~V~~-----d---~p~-p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~ 223 (266)
T d1o54a_ 169 DEKDVDALFL-----D---VPD-PWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI 223 (266)
T ss_dssp SCCSEEEEEE-----C---CSC-GGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred cccceeeeEe-----c---CCC-HHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCce
Confidence 3455665432 2 233 356788999999999998763 2333333443444444563
|