Citrus Sinensis ID: 044964

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
Protein Sequence
MASSSFPPTATVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISVVIFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFEERFVGREDKLRTWRIALREAANISGFDSNTV
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEcccccccccccHHHHHHHHHHccccEEEcccccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHcccccccEEEEEEccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEEEEEEccccHcHHHHHHHHHHHHHHHccccEEEcccccccccccHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEEcccHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
masssfpptatvpqvkydvflsfrgedtrdnFTSHLYAALCRKKIETFIdnqlirgedispsLLDAIERSKISVVIFSKGYASSGWCLEELVKILECkdkygqivipvfyhvepsnvrnqtgifgdaFSMFEERFVGREDKLRTWRIALREAanisgfdsntv
Flexible Loop (DISEMBL)
masssfpptatvpqvkYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISVVIFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFEERFVGREDKLRTWRIALreaanisgfdsntv
Low Complexity Region (SEG)
MASSSFPPTATVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISVVIFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFEERFVGREDKLRTWRIALREAANISGFDSNTV
Disordered region (IsUnstruct)
***********VPQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISVVIFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFEERFVGREDKLRTWRIALREAANI********
Disordered Region (DISOPRED)
****************YDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISVVIFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFEER*****DKLRTWRIALREAANISGFDSNT*
Disordered Region (DISEMBL)
**********TVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISVVIFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFEERFVGREDKLRTWRIALREAANISGFDSNTV
Disordered Region (DISPRO)
************PQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISVVIFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFEERFVGREDKLRTWRIALREAANISGF*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSSFPPTATVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISVVIFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFEERFVGREDKLRTWRIALREAANISGFDSNTV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	163	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.865	0.123	0.535	2e-37
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.858	0.107	0.510	1e-33
O82500	1095	Putative disease resistan	no	no	0.852	0.126	0.517	2e-33
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.932	0.429	0.401	2e-26
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.797	0.316	0.458	3e-24
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.883	0.367	0.430	2e-20
Q9SYC9	571	Vesicle-associated protei	no	no	0.963	0.274	0.343	2e-20
Q9FL92	1372	Probable WRKY transcripti	no	no	0.595	0.070	0.333	5e-07
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.723	0.062	0.251	9e-07

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  154 bits (389), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 76/142 (53%), Positives = 98/142 (69%), Gaps = 1/142 (0%)

Query: 17  YDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIR-GEDISPSLLDAIERSKISVV 75
           YDVFLSFRGEDTR  FTSHLY  L  K I+TF D++ +  G  I   L  AIE S+ ++V
Sbjct: 12  YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query: 76  IFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFEERF 135
           +FS+ YA+S WCL ELVKI+ECK ++ Q VIP+FY V+PS+VRNQ   F  AF   E ++
Sbjct: 72  VFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKY 131

Query: 136 VGREDKLRTWRIALREAANISG 157
               + ++ WRIAL EAAN+ G
Sbjct: 132 KDDVEGIQRWRIALNEAANLKG 153

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  142 bits (358), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 74/145 (51%), Positives = 99/145 (68%), Gaps = 5/145 (3%)

Query: 16  KYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISVV 75
           +YDVF SFRGED RD+F SHL   L R K  TFID+++ R   I P LL AI+ S+I++V
Sbjct: 11  RYDVFPSFRGEDVRDSFLSHLLKEL-RGKAITFIDDEIERSRSIGPELLSAIKESRIAIV 69

Query: 76  IFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFEERF 135
           IFSK YASS WCL ELV+I +C     Q+VIP+F+HV+ S V+ QTG FG    +FEE  
Sbjct: 70  IFSKNYASSTWCLNELVEIHKCYTNLNQMVIPIFFHVDASEVKKQTGEFG---KVFEETC 126

Query: 136 VGR-EDKLRTWRIALREAANISGFD 159
             + ED+ ++W+ AL   A ++G+D
Sbjct: 127 KAKSEDEKQSWKQALAAVAVMAGYD 151

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  141 bits (355), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 74/143 (51%), Positives = 96/143 (67%), Gaps = 4/143 (2%)

Query: 16  KYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISVV 75
           +YDVF SFRGED R+NF SHL      K I TF D+ + R   I   L  AI  SKISVV
Sbjct: 10  RYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHELRAAIRESKISVV 69

Query: 76  IFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFEERF 135
           +FS+ YASS WCL+EL++I++CK++ G  V+PVFY V+PS++R QTG FG +F    E  
Sbjct: 70  LFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGKFGMSFL---ETC 126

Query: 136 VGR-EDKLRTWRIALREAANISG 157
            G+ E++   WR AL +AANI G
Sbjct: 127 CGKTEERQHNWRRALTDAANILG 149

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 92/157 (58%), Gaps = 5/157 (3%)

Query: 2   ASSSFPPTATVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISP 61
           ASSS  PT T PQV    F++FRG+D R+ F S L  A+    I  FID   + G D+  
Sbjct: 3   ASSSVRPTPTGPQV----FINFRGKDLRNGFLSFLEPAMREANINVFIDKDEVVGTDLV- 57

Query: 62  SLLDAIERSKISVVIFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQT 121
           +L   I+ S+++VVIFSK Y SS WCL+EL +I +C ++ G   IP+FY + PS+V    
Sbjct: 58  NLFVRIQESRVAVVIFSKDYTSSEWCLDELAEIKDCINQGGLNAIPIFYKLAPSSVLELK 117

Query: 122 GIFGDAFSMFEERFVGREDKLRTWRIALREAANISGF 158
           G FGD F + +E++    ++ + W+ AL     + G 
Sbjct: 118 GGFGDTFRVLKEKYKNDPERTQKWQEALESIPKLKGL 154

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score =  110 bits (276), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 60/131 (45%), Positives = 82/131 (62%), Gaps = 1/131 (0%)

Query: 19  VFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISVVIFS 78
           VF++FRG+D R  F S L  AL ++KI  FID Q  RG+ +  SL D I  SKI++VIFS
Sbjct: 24  VFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQEERGKYLI-SLFDTIGESKIALVIFS 82

Query: 79  KGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFEERFVGR 138
           +GY  S WC++ELVKI E  D+   I+IP+FY ++   V++ TG FGD F    +++   
Sbjct: 83  EGYCESHWCMDELVKIKEYMDQNRLIIIPIFYRLDLDVVKDLTGKFGDNFWDLVDKYQPE 142

Query: 139 EDKLRTWRIAL 149
             KL  W  AL
Sbjct: 143 PKKLHKWTEAL 153

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/151 (43%), Positives = 82/151 (54%), Gaps = 7/151 (4%)

Query: 1   MASSS--FPPTATVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGED 58
           MASSS    PT T PQV    F+ FRG D R +F S L  AL    I  FID     G +
Sbjct: 1   MASSSSVVKPTPTGPQV----FICFRGADVRKHFISFLVPALREANINVFIDENEFLGSE 56

Query: 59  ISPSLLDAIERSKISVVIFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVR 118
           ++ +LL  IE S++++VIFS  +  S  CL EL KI E KD+   IVIP+FY V+PS V+
Sbjct: 57  MA-NLLTRIEESELALVIFSVDFTRSHRCLNELAKIKERKDQGRLIVIPIFYKVKPSAVK 115

Query: 119 NQTGIFGDAFSMFEERFVGREDKLRTWRIAL 149
              G FGD F   E          + W+ AL
Sbjct: 116 FLEGKFGDNFRALERNNRHMLPITQKWKEAL 146

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 90/160 (56%), Gaps = 3/160 (1%)

Query: 2   ASSSFPPTATVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISP 61
           ASS+     T+PQ  Y VF++FRG++ R++F   L  A+  +KI  F D   +RG +++ 
Sbjct: 345 ASSTDDHGITLPQ--YQVFINFRGDELRNSFVGFLVKAMRLEKINVFTDEVELRGTNLN- 401

Query: 62  SLLDAIERSKISVVIFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQT 121
            L   IE S+++V IFS+ Y  S WCL+ELVK+ E  ++   +V+PVFY +  +  +   
Sbjct: 402 YLFRRIEESRVAVAIFSERYTESCWCLDELVKMKEQMEQGKLVVVPVFYRLNATACKRFM 461

Query: 122 GIFGDAFSMFEERFVGREDKLRTWRIALREAANISGFDSN 161
           G FGD     E  +    ++++ W+ AL    +  G  S+
Sbjct: 462 GAFGDNLRNLEWEYRSEPERIQKWKEALSSVFSNIGLTSD 501

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 8/105 (7%)

Query: 26  EDTRDNFTSHLYAALCRKKI-ETFIDNQLIRGEDISPSLLDAIERSKISVVIFSKGYASS 84
           E+ R +F SHL  AL RK + + FID+     + +S      +ER+++SV+I       S
Sbjct: 14  EEVRYSFVSHLSKALQRKGVNDVFIDSD----DSLSNESQSMVERARVSVMILPGNRTVS 69

Query: 85  GWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQTGIFGDAFS 129
              L++LVK+L+C+    Q+V+PV Y V  S     + +    FS
Sbjct: 70  ---LDKLVKVLDCQKNKDQVVVPVLYGVRSSETEWLSALDSKGFS 111

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 71/143 (49%), Gaps = 25/143 (17%)

Query: 17  YDVFLSF-RGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISVV 75
           YDV + + R + + ++F SHL A+LCR+ I  +        E  +   +DA+ + ++ ++
Sbjct: 668 YDVVIRYGRADISNEDFISHLRASLCRRGISVY--------EKFNE--VDALPKCRVLII 717

Query: 76  IFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFEERF 135
           + +  Y  S      L+ ILE +    ++V P+FY + P +    +  +        ERF
Sbjct: 718 VLTSTYVPS-----NLLNILEHQHTEDRVVYPIFYRLSPYDFVCNSKNY--------ERF 764

Query: 136 VGREDKLRTWRIALREAANISGF 158
              +D+ + W+ AL+E   + G+
Sbjct: 765 Y-LQDEPKKWQAALKEITQMPGY 786

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
351722793	299	TIR-NBS-LRR type disease resistance prot	0.993	0.541	0.621	1e-55
224145030	1435	tir-nbs-lrr resistance protein [Populus	0.969	0.110	0.654	2e-53
224145016	1254	tir-nbs-lrr resistance protein [Populus	0.969	0.125	0.654	1e-52
317106744	947	JHS03A10.2 [Jatropha curcas]	0.920	0.158	0.653	6e-52
224127754	1125	tir-nbs-lrr resistance protein [Populus	0.926	0.134	0.668	7e-52
224127917	1470	tir-nbs-lrr resistance protein [Populus	0.969	0.107	0.623	2e-50
255555349	1109	leucine-rich repeat containing protein,	0.920	0.135	0.66	2e-50
224165730	162	predicted protein [Populus trichocarpa]	0.957	0.962	0.648	2e-50
255564962	1091	TMV resistance protein N, putative [Rici	0.957	0.142	0.612	7e-50
255564976	944	TMV resistance protein N, putative [Rici	0.926	0.159	0.642	9e-50

>gi|351722793|ref|NP_001237768.1| TIR-NBS-LRR type disease resistance protein [Glycine max] gi|223452578|gb|ACM89616.1| TIR-NBS-LRR type disease resistance protein [Glycine max]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 102/164 (62%), Positives = 134/164 (81%), Gaps = 2/164 (1%)

Query: 1   MASSSFPP--TATVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGED 58
           MAS   PP  T+  PQ  +DVFLSFRGEDTR  FTSHLYAAL R +++T+IDN+L RG++
Sbjct: 1   MASFVPPPPFTSKTPQQVHDVFLSFRGEDTRYTFTSHLYAALTRLQVKTYIDNELERGDE 60

Query: 59  ISPSLLDAIERSKISVVIFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVR 118
           ISPSLL AI+ +K++V++FS+ YASS WCL+ELVKI+ECK K GQI++PVFYHV+P++VR
Sbjct: 61  ISPSLLRAIDDAKVAVIVFSENYASSRWCLDELVKIMECKRKNGQIIVPVFYHVDPTHVR 120

Query: 119 NQTGIFGDAFSMFEERFVGREDKLRTWRIALREAANISGFDSNT 162
           +QTG +G AF+M E+RFVG  +K++TWR+ L E ANISG+D  T
Sbjct: 121 HQTGSYGHAFAMHEQRFVGNMNKVQTWRLVLGEVANISGWDCLT 164

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145030|ref|XP_002325501.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862376|gb|EEE99882.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 106/162 (65%), Positives = 128/162 (79%), Gaps = 4/162 (2%)

Query: 1   MASSSFPPTATVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDIS 60
           MASSS    A   + KYDVFLSFRG+DTR+NFTSHLY ALCRKKI+TFID++L RG +I+
Sbjct: 1   MASSS----AVAHKWKYDVFLSFRGKDTRNNFTSHLYDALCRKKIKTFIDDRLERGGEIT 56

Query: 61  PSLLDAIERSKISVVIFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQ 120
           P+LL  IE S+ISVVIFSK YASS WC++ELVKILECK+ YGQIV+PVFYHV PS+V  Q
Sbjct: 57  PALLKTIEESRISVVIFSKNYASSPWCVDELVKILECKETYGQIVLPVFYHVNPSDVDEQ 116

Query: 121 TGIFGDAFSMFEERFVGREDKLRTWRIALREAANISGFDSNT 162
           TG FG+AF+  E+ F G+ DK+  WR  L  AA+ISG+DS  
Sbjct: 117 TGSFGNAFAELEKNFKGKMDKVPRWRADLTNAASISGWDSQV 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145016|ref|XP_002325496.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862371|gb|EEE99877.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/162 (65%), Positives = 127/162 (78%), Gaps = 4/162 (2%)

Query: 1   MASSSFPPTATVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDIS 60
           MASSS    +   + KYDVFLSFRGEDTR+NFTSHLY ALCRKKI+TFID+ L RGE+I+
Sbjct: 1   MASSS----SVAHKRKYDVFLSFRGEDTRNNFTSHLYDALCRKKIKTFIDDGLERGEEIT 56

Query: 61  PSLLDAIERSKISVVIFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQ 120
           P+LL  IE S+ISVVIFSK YASS WC++ELVKILECK+  GQIV+PVFYHV+PS+V  Q
Sbjct: 57  PALLKKIEESRISVVIFSKNYASSPWCVDELVKILECKETCGQIVLPVFYHVDPSDVDEQ 116

Query: 121 TGIFGDAFSMFEERFVGREDKLRTWRIALREAANISGFDSNT 162
           TG FG+AFS  E  F G+ DK+  WR  +  AA+ISG+DS  
Sbjct: 117 TGSFGNAFSELENIFKGKMDKVPRWRADMTYAASISGWDSQV 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106744|dbj|BAJ53239.1| JHS03A10.2 [Jatropha curcas]

 Score =  208 bits (529), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 98/150 (65%), Positives = 121/150 (80%)

Query: 14  QVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKIS 73
           Q +YDVFLSFRGEDTRD+FTSHLYAALC KKI+TFIDN L+RG++IS SLL AIE SKIS
Sbjct: 7   QERYDVFLSFRGEDTRDSFTSHLYAALCDKKIQTFIDNNLVRGKEISSSLLKAIEESKIS 66

Query: 74  VVIFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFEE 133
           V I S+ YASS WCLEEL +I++C  K GQIVIPVFY + PS+VRNQTG F DAF+ +E+
Sbjct: 67  VPILSENYASSKWCLEELAEIIKCMKKNGQIVIPVFYRIRPSDVRNQTGSFHDAFARYEK 126

Query: 134 RFVGREDKLRTWRIALREAANISGFDSNTV 163
             +  +DK++ WR AL+E A +SG+DS  +
Sbjct: 127 SLMVNKDKVQRWRAALKEVAGLSGWDSMAI 156

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127754|ref|XP_002329169.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870950|gb|EEF08081.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  208 bits (529), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 101/151 (66%), Positives = 120/151 (79%)

Query: 13  PQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKI 72
           PQ KYDVFLSFRGEDTR  F SHLYAAL RK+I TFID +L RGE+ISPSLL AIE SK+
Sbjct: 11  PQEKYDVFLSFRGEDTRVCFVSHLYAALKRKQISTFIDYKLNRGEEISPSLLKAIEDSKL 70

Query: 73  SVVIFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFE 132
           SVV+FS  YASS WCLEEL KILECK   GQ+VIPVFY V+PS+VRNQTG F DAF+  +
Sbjct: 71  SVVVFSDNYASSKWCLEELAKILECKKVKGQMVIPVFYRVDPSHVRNQTGSFADAFARHD 130

Query: 133 ERFVGREDKLRTWRIALREAANISGFDSNTV 163
           +    + +K+  WR A+REAAN+SG+DS+ +
Sbjct: 131 QLLKEKMEKVLNWRAAMREAANLSGWDSHNI 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127917|ref|XP_002329209.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870990|gb|EEF08121.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 101/162 (62%), Positives = 123/162 (75%), Gaps = 4/162 (2%)

Query: 1   MASSSFPPTATVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDIS 60
           M SSS    A   + KYDVFLSFRG+DTRDNF SHL  ALCRK+I+TFID++L RGE+I+
Sbjct: 1   MVSSS----AVAQKWKYDVFLSFRGKDTRDNFVSHLRDALCRKQIKTFIDDKLERGEEIT 56

Query: 61  PSLLDAIERSKISVVIFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQ 120
            +LL  IE S+ISV+IFS+ YASS WC++ELVKILECK  YGQIV+PVFYHV+PS+V  Q
Sbjct: 57  GALLRTIEESRISVIIFSRNYASSPWCVDELVKILECKKAYGQIVLPVFYHVDPSDVDQQ 116

Query: 121 TGIFGDAFSMFEERFVGREDKLRTWRIALREAANISGFDSNT 162
           TG FG+AF+  E  F  + DK+  WR  L  AANISG+DS  
Sbjct: 117 TGSFGNAFAELERNFKQKMDKVPRWRADLTSAANISGWDSQV 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555349|ref|XP_002518711.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223542092|gb|EEF43636.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/150 (66%), Positives = 118/150 (78%)

Query: 11  TVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERS 70
           T  + KYDVFL+FRGEDTR NFTSHL+ AL +  I TFIDN+L+RGE +SPSLL AIE S
Sbjct: 17  TTCKRKYDVFLNFRGEDTRINFTSHLHDALLKNNILTFIDNELVRGEALSPSLLKAIEES 76

Query: 71  KISVVIFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQTGIFGDAFSM 130
           KISVVI S+ Y  S WCLEELVKILEC    GQ+VIPVFY V+PS+VRNQTG F DAF+ 
Sbjct: 77  KISVVILSENYPYSKWCLEELVKILECMKINGQMVIPVFYKVDPSHVRNQTGSFADAFAR 136

Query: 131 FEERFVGREDKLRTWRIALREAANISGFDS 160
            EE  +  EDK+++WR AL++ ANISG+DS
Sbjct: 137 HEESLLVTEDKVKSWRAALKDVANISGWDS 166

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224165730|ref|XP_002338849.1| predicted protein [Populus trichocarpa] gi|222873666|gb|EEF10797.1| predicted protein [Populus trichocarpa]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 105/162 (64%), Positives = 121/162 (74%), Gaps = 6/162 (3%)

Query: 1   MASSSFPPTATVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDIS 60
           MASSS     T  Q KYDVFLSFRG+DTRDNFTSHLY ALC K+I+TFIDN L RGE+I 
Sbjct: 1   MASSS----TTAQQWKYDVFLSFRGKDTRDNFTSHLYDALCHKQIKTFIDNDLERGEEIE 56

Query: 61  PSLLDAIERSKISVVIFSKGYASSGWCLEELVKILECKDKYGQIVIP--VFYHVEPSNVR 118
           P+LL  IE S+ISVVIFSK YASS WC++ELVKILECK   GQIV+P   FYHV+PS+V 
Sbjct: 57  PTLLRTIEDSRISVVIFSKNYASSPWCVDELVKILECKRTCGQIVLPGFFFYHVDPSDVD 116

Query: 119 NQTGIFGDAFSMFEERFVGREDKLRTWRIALREAANISGFDS 160
            Q G FG+AF+  E  F  + DK  +WR  L  AANISG+DS
Sbjct: 117 EQRGSFGNAFAKLERNFKWKMDKDSSWRADLTNAANISGWDS 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564962|ref|XP_002523474.1| TMV resistance protein N, putative [Ricinus communis] gi|223537302|gb|EEF38933.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  201 bits (512), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 98/160 (61%), Positives = 121/160 (75%), Gaps = 4/160 (2%)

Query: 7   PPTATV---PQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQ-LIRGEDISPS 62
           PPT++    P+  YDVFLSFRG DTR N  SHLYAAL RK + TFID+  L RGE+ISP+
Sbjct: 3   PPTSSSNVPPKTSYDVFLSFRGADTRHNLISHLYAALSRKHVTTFIDDHGLDRGEEISPT 62

Query: 63  LLDAIERSKISVVIFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQTG 122
           LL AIE SKISV+IFS+ YASS WCL+ELVKI+EC     + V+PVFYHV+PS+VR QTG
Sbjct: 63  LLKAIEESKISVIIFSENYASSKWCLDELVKIMECMKTMSRNVLPVFYHVDPSDVRKQTG 122

Query: 123 IFGDAFSMFEERFVGREDKLRTWRIALREAANISGFDSNT 162
            FG AF + +E+F G  D+++ W  AL EAAN+SG+DSN 
Sbjct: 123 SFGQAFGVVKEKFKGSMDRVQRWSTALTEAANLSGWDSNN 162

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564976|ref|XP_002523481.1| TMV resistance protein N, putative [Ricinus communis] gi|223537309|gb|EEF38940.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  201 bits (511), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 97/151 (64%), Positives = 120/151 (79%)

Query: 13  PQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKI 72
           PQ+KYDVF+SFRGEDTRDNFTSHLYAAL +K+I+ F+D++L RGE+IS +L+  IE S +
Sbjct: 12  PQLKYDVFVSFRGEDTRDNFTSHLYAALHQKQIKAFVDDKLSRGEEISAALVKVIEESMV 71

Query: 73  SVVIFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFE 132
           SV+IFS+ YA S WCL+ELVKILECK   GQIV+PVFYHV+PS+V  Q G FG AF   E
Sbjct: 72  SVIIFSENYAFSPWCLDELVKILECKKTVGQIVLPVFYHVDPSDVAEQKGGFGAAFIEHE 131

Query: 133 ERFVGREDKLRTWRIALREAANISGFDSNTV 163
           + F  R DKL+ WR AL EAANISG+ S+ +
Sbjct: 132 KCFKERIDKLQKWRAALTEAANISGWSSSVI 162

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
TAIR|locus:1006230150	313	AT2G20142 [Arabidopsis thalian	0.877	0.456	0.5	1.2e-35
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.889	0.126	0.527	2.8e-34
TAIR|locus:2130319	796	RLM3 "RESISTANCE TO LEPTOSPHAE	0.858	0.175	0.555	1.5e-33
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.950	0.130	0.477	2.5e-32
TAIR|locus:2155189	980	AT5G49140 [Arabidopsis thalian	0.871	0.144	0.533	3.7e-32
TAIR|locus:2153072	1229	AT5G51630 [Arabidopsis thalian	0.865	0.114	0.544	4.4e-32
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.926	0.123	0.471	1.1e-31
TAIR|locus:2146253	1210	AT5G18370 [Arabidopsis thalian	0.957	0.128	0.472	1.5e-31
TAIR|locus:2028681	1161	AT1G31540 [Arabidopsis thalian	0.858	0.120	0.534	2.2e-31
TAIR|locus:2129236	1301	SNC1 "SUPPRESSOR OF NPR1-1, CO	0.858	0.107	0.510	2.7e-31

TAIR|locus:1006230150 AT2G20142 [Arabidopsis thaliana (taxid:3702)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 74/148 (50%), Positives = 107/148 (72%)

Query:    13 PQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKI 72
             P++K+DVF+SFR +DTRDNF SHL   L RK+I+TF+ ++L   E    SL  AIE SKI
Sbjct:     5 PKMKHDVFISFRSKDTRDNFVSHLCGCLRRKRIKTFLYDELPADERYEESL-KAIEVSKI 63

Query:    73 SVVIFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFE 132
             SV++FS+ +  S WCL+E+V IL+CK+K+GQIVIPV YHV+P ++ NQTG FGDAF+   
Sbjct:    64 SVIVFSENFGDSRWCLDEVVAILKCKEKFGQIVIPVLYHVDPLDIENQTGSFGDAFAKRR 123

Query:   133 ERFVGREDKLRTWRIALREAANISGFDS 160
             ++     ++L+ W+ +  EA N+ G+ +
Sbjct:   124 DK----AEQLQEWKDSFTEAINLPGWST 147

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 384 (140.2 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 77/146 (52%), Positives = 99/146 (67%)

Query:    17 YDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIR-GEDISPSLLDAIERSKISVV 75
             YDVFLSFRGEDTR  FTSHLY  L  K I+TF D++ +  G  I   L  AIE S+ ++V
Sbjct:    12 YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query:    76 IFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFEERF 135
             +FS+ YA+S WCL ELVKI+ECK ++ Q VIP+FY V+PS+VRNQ   F  AF   E ++
Sbjct:    72 VFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKY 131

Query:   136 VGREDKLRTWRIALREAANISGFDSN 161
                 + ++ WRIAL EAAN+ G   N
Sbjct:   132 KDDVEGIQRWRIALNEAANLKGSCDN 157

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2130319 RLM3 "RESISTANCE TO LEPTOSPHAERIA MACULANS 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 80/144 (55%), Positives = 100/144 (69%)

Query:    17 YDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISVVI 76
             YDVF +FRGED R +  SHL   L RK I TF DN++ R   I+P LL AIE S+IS+V+
Sbjct:     9 YDVFPNFRGEDVRHSLVSHLRKELDRKFINTFNDNRIERSRKITPELLLAIENSRISLVV 68

Query:    77 FSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFEERFV 136
             FSK YASS WCL+ELVKI EC +K  Q+VIP+FY V+PS+VR QTG FG    +F E   
Sbjct:    69 FSKNYASSTWCLDELVKIQECYEKLDQMVIPIFYKVDPSHVRKQTGEFG---MVFGETCK 125

Query:   137 GR-EDKLRTWRIALREAANISGFD 159
             GR E++ R W  AL E A+++G D
Sbjct:   126 GRTENEKRKWMRALAEVAHLAGED 149

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

GO:0009861 "jasmonic acid and ethylene-dependent systemic resistance" evidence=IMP

GO:2000071 "regulation of defense response by callose deposition" evidence=IMP

GO:0015979 "photosynthesis" evidence=RCA

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 2.5e-32, P = 2.5e-32
 Identities = 76/159 (47%), Positives = 104/159 (65%)

Query:     3 SSSFPPTATVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPS 62
             SSS PP++      + VFLSFRGED R    SH+     R  I  FIDN++ RG  I P 
Sbjct:    26 SSSSPPSSLSQNWLHPVFLSFRGEDVRKGLLSHIQKEFQRNGITPFIDNEMKRGGSIGPE 85

Query:    63 LLDAIERSKISVVIFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQTG 122
             LL AI  SKI++++ S+ Y SS WCL+ELV+I++C+++ GQ V+ VFY V+PS+VR Q G
Sbjct:    86 LLQAIRGSKIAIILLSRNYGSSKWCLDELVEIMKCREELGQTVMTVFYDVDPSDVRKQKG 145

Query:   123 IFGDAFSMFEERFVGR-EDKLRTWRIALREAANISGFDS 160
              FG    +F++  VGR E+ ++ W+ AL  AANI G DS
Sbjct:   146 DFG---KVFKKTCVGRPEEMVQRWKQALTSAANILGEDS 181

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2155189 AT5G49140 [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 79/148 (53%), Positives = 100/148 (67%)

Query:    16 KYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISVV 75
             KYDVF SFRGED R NF SHL      K I TF D+ + R + I   L +A+ +SKI VV
Sbjct:    14 KYDVFPSFRGEDVRGNFLSHLMKEFESKGIVTFKDDLIERSQTIGLELKEAVRQSKIFVV 73

Query:    76 IFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFEERF 135
             IFSK YASS WCL+ELV+IL+CK++  + +IP+FY V PS+VRNQTG FG  F    E  
Sbjct:    74 IFSKNYASSSWCLDELVEILKCKEE--RRLIPIFYKVNPSDVRNQTGKFGRGF---RETC 128

Query:   136 VGREDKLRT-WRIALREAANISGFDSNT 162
              G+ D+ +  W+ AL EAANI+G DS +
Sbjct:   129 EGKNDETQNKWKAALTEAANIAGEDSQS 156

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153072 AT5G51630 [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 4.4e-32, P = 4.4e-32
 Identities = 79/145 (54%), Positives = 96/145 (66%)

Query:    17 YDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISVVI 76
             YDVF SF GED R +F SHL   L RK I TFIDN + R   I+P LL AI  S IS+V+
Sbjct:    11 YDVFPSFSGEDVRKSFLSHLLKKLHRKSINTFIDNNIERSHAIAPDLLSAINNSMISIVV 70

Query:    77 FSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFEERFV 136
             FSK YASS WCL ELV+I +C  +  QIVIP+FY V+PS+VR QT  FG+ F +     V
Sbjct:    71 FSKKYASSTWCLNELVEIHKCYKELTQIVIPIFYEVDPSDVRKQTREFGEFFKV---TCV 127

Query:   137 GR-EDKLRTWRIALREAANISGFDS 160
             G+ ED  + W  AL E A+I+G DS
Sbjct:   128 GKTEDVKQQWIEALEEVASIAGHDS 152

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 1.1e-31, P = 1.1e-31
 Identities = 75/159 (47%), Positives = 110/159 (69%)

Query:     1 MASSSFPPTATVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDIS 60
             M SSS P +A     ++DVFLSFRG DTR+NFT HL  AL  + I++FID++L RG++++
Sbjct:     1 MESSS-PSSA-----EFDVFLSFRGFDTRNNFTGHLQKALRLRGIDSFIDDRLRRGDNLT 54

Query:    61 PSLLDAIERSKISVVIFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQ 120
              +L D IE+SKI++++FS  YA+S WCL ELVKILEC++   Q+V+P+FY V+ S+V  Q
Sbjct:    55 -ALFDRIEKSKIAIIVFSTNYANSAWCLRELVKILECRNSNQQLVVPIFYKVDKSDVEKQ 113

Query:   121 TGIFGDAFSMFEERFVG-REDKLRTWRIALREAANISGF 158
                F   F + E  F G   +++ +W+ AL  A+NI G+
Sbjct:   114 RNSFAVPFKLPELTFPGVTPEEISSWKAALASASNILGY 152

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2146253 AT5G18370 [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 1.5e-31, P = 1.5e-31
 Identities = 77/163 (47%), Positives = 104/163 (63%)

Query:     2 ASSSFPPTATVPQVK---YDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGED 58
             +S S PP+ + P  +   + VF SFRGED R  F SH+      K I  FID+++ RGE 
Sbjct:    43 SSLSSPPSLSSPISRTWTHQVFPSFRGEDVRKGFLSHIQKEFKSKGIVPFIDDEMKRGES 102

Query:    59 ISPSLLDAIERSKISVVIFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVR 118
             I P L  AI  SKI++V+ SK YASS WCL ELV+I+ C+++ GQ V+ VFY V+PS+VR
Sbjct:   103 IGPGLFQAIRESKIAIVLLSKNYASSSWCLNELVEIMNCREEIGQTVMTVFYQVDPSDVR 162

Query:   119 NQTGIFGDAFSMFEERFVGREDKLRT-WRIALREAANISGFDS 160
              QTG FG AF   ++  VG+  +++  W  AL + ANI G DS
Sbjct:   163 KQTGDFGKAF---KKTCVGKTQEVKQRWSRALMDVANILGQDS 202

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2028681 AT1G31540 [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 2.2e-31, P = 2.2e-31
 Identities = 77/144 (53%), Positives = 92/144 (63%)

Query:    17 YDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISVVI 76
             YDVFLSFRGED R  F SH    L RK I  F DN++ R   + P L  AI+ S+I+VV+
Sbjct:    12 YDVFLSFRGEDVRVTFRSHFLKELDRKLITAFRDNEIERSHSLWPDLEQAIKESRIAVVV 71

Query:    77 FSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFEERFV 136
             FSK YASS WCL EL++I+ C DK   IVIPVFYHV+PS VR+Q G FG  F    +R  
Sbjct:    72 FSKNYASSSWCLNELLEIVNCNDK---IVIPVFYHVDPSQVRHQIGDFGKIFENTCKRQT 128

Query:   137 GREDKLRTWRIALREAANISGFDS 160
               E K   W+ AL   AN+ GFDS
Sbjct:   129 DEEVK-NQWKKALTLVANMLGFDS 151

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2129236 SNC1 "SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 2.7e-31, P = 2.7e-31
 Identities = 74/145 (51%), Positives = 99/145 (68%)

Query:    16 KYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISVV 75
             +YDVF SFRGED RD+F SHL   L R K  TFID+++ R   I P LL AI+ S+I++V
Sbjct:    11 RYDVFPSFRGEDVRDSFLSHLLKEL-RGKAITFIDDEIERSRSIGPELLSAIKESRIAIV 69

Query:    76 IFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFEERF 135
             IFSK YASS WCL ELV+I +C     Q+VIP+F+HV+ S V+ QTG FG    +FEE  
Sbjct:    70 IFSKNYASSTWCLNELVEIHKCYTNLNQMVIPIFFHVDASEVKKQTGEFG---KVFEETC 126

Query:   136 VGR-EDKLRTWRIALREAANISGFD 159
               + ED+ ++W+ AL   A ++G+D
Sbjct:   127 KAKSEDEKQSWKQALAAVAVMAGYD 151

GO:0000166 "nucleotide binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=NAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IGI;IMP

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00190624 tir-nbs-lrr resistance protein (1436 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	163
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-46
pfam01582	135	pfam01582, TIR, TIR domain	2e-43
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	9e-42
PLN03194	187	PLN03194, PLN03194, putative disease resistance pr	1e-17
pfam13676	102	pfam13676, TIR_2, TIR domain	4e-11

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  161 bits (409), Expect = 1e-46
 Identities = 78/162 (48%), Positives = 102/162 (62%), Gaps = 6/162 (3%)

Query: 1   MASSSFPPTATVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDIS 60
           MASSS    ++     YDVF SF GED R  F SH    L RK I  F DN++ R + + 
Sbjct: 1   MASSS----SSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLD 56

Query: 61  PSLLDAIERSKISVVIFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQ 120
           P L  AI  S+I+VV+FSK YASS WCL EL++I+ CK++ GQ+VIPVFY ++PS+VR Q
Sbjct: 57  PELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQ 116

Query: 121 TGIFGDAFSMFEERFVGREDKLRTWRIALREAANISGFDSNT 162
           TG FG+AF    +     ED+   W+ AL + ANI G+ S  
Sbjct: 117 TGDFGEAFEKTCQN--KTEDEKIQWKQALTDVANILGYHSQN 156

syringae 6; Provisional. Length = 1153

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score =  140 bits (354), Expect = 2e-43
 Identities = 63/135 (46%), Positives = 91/135 (67%), Gaps = 3/135 (2%)

Query: 19  VFLSFRGEDTRDNFTSHLYAALCRKKIETFIDN-QLIRGEDISPSLLDAIERSKISVVIF 77
           VF+SF G+D RD F SHL   L  K I+  ID+   + GE I  +L +AIE+S+ ++VIF
Sbjct: 1   VFVSFSGKDDRDTFVSHLLKELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIF 60

Query: 78  SKGYASSGWCLEELVKILECKDKYG--QIVIPVFYHVEPSNVRNQTGIFGDAFSMFEERF 135
           S  YASS WCL+ELV+I++C  + G  ++++P+FY V+PS+VR Q+G FG AF    +  
Sbjct: 61  SSNYASSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSDVRPQSGKFGKAFLKTLKWS 120

Query: 136 VGREDKLRTWRIALR 150
             +EDK+R W+ AL 
Sbjct: 121 GDKEDKIRFWKKALY 135

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score =  135 bits (343), Expect = 9e-42
 Identities = 56/142 (39%), Positives = 82/142 (57%), Gaps = 4/142 (2%)

Query: 16  KYDVFLSFRG-EDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISV 74
           +YDVF+S+ G ED R+ F SHL   L    +  FID+    G D+   + +AIE+S+I++
Sbjct: 1   EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAI 59

Query: 75  VIFSKGYASSGWCLEELVKILECKDKYGQI-VIPVFYHVEPSNVRNQTGIFGDAFSMFEE 133
           V+ S  YA S WCL+ELV  LE   + G + VIP+FY V PS+VR Q G F   F     
Sbjct: 60  VVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNYL 119

Query: 134 RFVGREDKLRTWRIALREAANI 155
           ++   ++K + W+ AL    + 
Sbjct: 120 KWPE-DEKEQFWKKALYAVPSK 140

Length = 140

>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional

 Score = 75.2 bits (185), Expect = 1e-17
 Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 19/156 (12%)

Query: 8   PTATVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIR-GEDISPSLLDA 66
           P+++      DVF++ RG DT+    + LY  L R  +  F+DN+ ++ G+ +   +  A
Sbjct: 18  PSSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSA 77

Query: 67  IERSKISVVIFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQTGIFGD 126
           I   K+ V +FS  Y  S +CL EL  I+E K +    VIP+F  V+PS +R        
Sbjct: 78  IRNCKVGVAVFSPRYCESYFCLHELALIMESKKR----VIPIFCDVKPSQLR-------- 125

Query: 127 AFSMFEERFVGREDKLRTWRIALREAANISG--FDS 160
                 +     ++++R +  AL EA    G  FDS
Sbjct: 126 ----VVDNGTCPDEEIRRFNWALEEAKYTVGLTFDS 157

Length = 187

>gnl|CDD|222311 pfam13676, TIR_2, TIR domain

 Score = 56.0 bits (136), Expect = 4e-11
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 19  VFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISVVIFS 78
           VF+S+   D    +   L  AL    I  ++D  +  GED    + +A+  + + +V+ S
Sbjct: 1   VFISYASADRE--WAEWLADALEAAGIRVWLDWDIPPGEDWRDEIEEALRSADVVLVLLS 58

Query: 79  KGYASSGWCLEELVKILECKDKYGQIVIPV 108
             Y +S WC  E    LE     G+ +IPV
Sbjct: 59  PAYLASPWCRAEWGAALER----GKRLIPV 84

This is a family of bacterial Toll-like receptors. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	163
PLN03194	187	putative disease resistance protein; Provisional	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.94
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.94
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.8
KOG3678	832	consensus SARM protein (with sterile alpha and arm	99.17
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	98.76
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	98.19
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	97.31
PF13271	83	DUF4062: Domain of unknown function (DUF4062)	94.33
PF05014	113	Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer	93.05
COG4916	329	Uncharacterized protein containing a TIR (Toll-Int	93.05
COG4271	233	Predicted nucleotide-binding protein containing TI	90.98
PF14258	70	DUF4350: Domain of unknown function (DUF4350)	82.74
cd00860	91	ThrRS_anticodon ThrRS Threonyl-anticodon binding d	80.56

>PLN03194 putative disease resistance protein; Provisional

Probab=100.00  E-value=3.9e-44  Score=273.72  Aligned_cols=137  Identities=34%  Similarity=0.607  Sum_probs=127.2

Q ss_pred             CCCCCCCceeeEEEecccccCchhHHHHHHHHHhcCCceeeecC-cccccccCchhHHHhhhhcceEEEEEecCCcCchh
Q 044964            8 PTATVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDN-QLIRGEDISPSLLDAIERSKISVVIFSKGYASSGW   86 (163)
Q Consensus         8 ~~s~~~~~~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~-~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~~S~w   86 (163)
                      |+|++...+|||||||+++|+|++|+++|+.+|+++||++|+|+ ++++|+.+.+.|.+||++|+++|+||||+|++|.|
T Consensus        18 ~~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~W   97 (187)
T PLN03194         18 PSSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYF   97 (187)
T ss_pred             ccCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchh
Confidence            77788888999999999999999999999999999999999999 99999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhhhhcCceeEeEEeeeCCcccccc-ccchHHHHHHHHHhccCChhHHHHHHHHHHHhhcccccccc
Q 044964           87 CLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQ-TGIFGDAFSMFEERFVGREDKLRTWRIALREAANISGFDSN  161 (163)
Q Consensus        87 c~~El~~~~~~~~~~~~~iiPIf~~v~p~~v~~~-~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~~g~~~~  161 (163)
                      |++||..|+++.    ..||||||+|+|++||+| .+.             .+.+++++||.||++|++++|++++
T Consensus        98 CLdEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~  156 (187)
T PLN03194         98 CLHELALIMESK----KRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFD  156 (187)
T ss_pred             HHHHHHHHHHcC----CEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCC
Confidence            999999999863    489999999999999997 332             2468999999999999999999774

>PLN03210 Resistant to P

Probab=100.00  E-value=2.5e-42  Score=324.39  Aligned_cols=156  Identities=50%  Similarity=0.819  Sum_probs=146.1

Q ss_pred             CCCCCCCCCCCCCCceeeEEEecccccCchhHHHHHHHHHhcCCceeeecCcccccccCchhHHHhhhhcceEEEEEecC
Q 044964            1 MASSSFPPTATVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISVVIFSKG   80 (163)
Q Consensus         1 ~~~~~~~~~s~~~~~~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~IvvlS~~   80 (163)
                      ||+||    |+++.++|||||||||+|+|++|++||+.+|.++||++|.|++++.|+.+.+++.+||++|+++|+|||++
T Consensus         1 ~~~~~----~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~   76 (1153)
T PLN03210          1 MASSS----SSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKN   76 (1153)
T ss_pred             CCCCC----CCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCC
Confidence            56553    44567899999999999999999999999999999999999899999999999999999999999999999


Q ss_pred             CcCchhhHHHHHHHHHhhhhcCceeEeEEeeeCCccccccccchHHHHHHHHHhccCChhHHHHHHHHHHHhhccccccc
Q 044964           81 YASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFEERFVGREDKLRTWRIALREAANISGFDS  160 (163)
Q Consensus        81 y~~S~wc~~El~~~~~~~~~~~~~iiPIf~~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~~g~~~  160 (163)
                      |+.|.||++||.+|++|++++++.|+||||+|+|+|||+|+|.||++|.++++..  +++++++||.||++|++++|+++
T Consensus        77 ya~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~  154 (1153)
T PLN03210         77 YASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHS  154 (1153)
T ss_pred             cccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceec
Confidence            9999999999999999999999999999999999999999999999999988764  47899999999999999999987


Q ss_pred             cC
Q 044964          161 NT  162 (163)
Q Consensus       161 ~~  162 (163)
                      .+
T Consensus       155 ~~  156 (1153)
T PLN03210        155 QN  156 (1153)
T ss_pred             CC
Confidence            53

syringae 6; Provisional

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.94  E-value=3.7e-28  Score=179.23  Aligned_cols=132  Identities=36%  Similarity=0.592  Sum_probs=115.0

Q ss_pred             EEEecccccCchhHHHHHHHHHhcC--CceeeecC-cccccccCchhHHHhhhhcceEEEEEecCCcCchhhHHHHHHHH
Q 044964           19 VFLSFRGEDTRDNFTSHLYAALCRK--KIETFIDN-QLIRGEDISPSLLDAIERSKISVVIFSKGYASSGWCLEELVKIL   95 (163)
Q Consensus        19 VFISys~~D~~~~fv~~L~~~L~~~--gi~vf~d~-~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~~   95 (163)
                      |||||++.+.+..|+.+|..+|+++  |+++|+++ |+.+|..+.++|.++|++|+++|+|||++|+.|+||+.||..|+
T Consensus         1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~   80 (141)
T PF01582_consen    1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL   80 (141)
T ss_dssp             EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred             cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence            8999999333568999999999999  99999999 99999999999999999999999999999999999999999999


Q ss_pred             Hhhhhc--CceeEeEEeeeCCcccc-ccccchHHHHHHHHHhccCC--hhHHHHHHHHHH
Q 044964           96 ECKDKY--GQIVIPVFYHVEPSNVR-NQTGIFGDAFSMFEERFVGR--EDKLRTWRIALR  150 (163)
Q Consensus        96 ~~~~~~--~~~iiPIf~~v~p~~v~-~~~~~f~~~f~~~~~~~~~~--~~~~~~W~~al~  150 (163)
                      ++..+.  ...|+|||+++.+++++ .+++.|+..|.........+  .+....|++++.
T Consensus        81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~  140 (141)
T PF01582_consen   81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY  140 (141)
T ss_dssp             HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred             hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence            987654  48999999999999999 79999999998777665533  568899999875

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.94  E-value=4.2e-26  Score=166.65  Aligned_cols=137  Identities=41%  Similarity=0.668  Sum_probs=114.7

Q ss_pred             eeeEEEeccc-ccCchhHHHHHHHHHhcCCceeeecCcccccccCchhHHHhhhhcceEEEEEecCCcCchhhHHHHHHH
Q 044964           16 KYDVFLSFRG-EDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISVVIFSKGYASSGWCLEELVKI   94 (163)
Q Consensus        16 ~ydVFISys~-~D~~~~fv~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~   94 (163)
                      +|||||||++ .+....|+.+|...|...|+.+|.|+....|.. ..+|.++|++|+++|+|+||+|+.|+||..|+..+
T Consensus         1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~-~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a   79 (140)
T smart00255        1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGD-LEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA   79 (140)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccch-HHHHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence            5999999998 344568999999999999999999974333333 33999999999999999999999999999999999


Q ss_pred             HHhhhh-cCceeEeEEeeeCCccccccccchHHHHHHHHHhccCChhHHHHHHHHHHHhhc
Q 044964           95 LECKDK-YGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFEERFVGREDKLRTWRIALREAAN  154 (163)
Q Consensus        95 ~~~~~~-~~~~iiPIf~~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~  154 (163)
                      .++..+ ...+||||+++..|+++..+.+.++..+...+..+..+..+ +.|+.++..+.+
T Consensus        80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~~  139 (140)
T smart00255       80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVPS  139 (140)
T ss_pred             HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhcc
Confidence            987644 67899999999889899999999999988776666543333 789999988764

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.80  E-value=2.7e-20  Score=129.62  Aligned_cols=87  Identities=36%  Similarity=0.569  Sum_probs=75.6

Q ss_pred             EEEecccccCchhHHHHHHHHHhcCCceeeecCcccccccCchhHHHhhhhcceEEEEEecCCcCchhhHHHHHHHHHhh
Q 044964           19 VFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISVVIFSKGYASSGWCLEELVKILECK   98 (163)
Q Consensus        19 VFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~~~~~   98 (163)
                      |||||++.|.  .++..|...|++.|+++|+|.++.+|+.+.+.|.++|++|+.+|+++||+|.+|+||..|+..+.+  
T Consensus         1 VFIS~~~~D~--~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~--   76 (102)
T PF13676_consen    1 VFISYSSEDR--EFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK--   76 (102)
T ss_dssp             EEEEEEGGGC--CCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC--
T ss_pred             eEEEecCCcH--HHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH--
Confidence            8999999994  699999999999999999999999999999999999999999999999999999999999999943  


Q ss_pred             hhcCceeEeEEee
Q 044964           99 DKYGQIVIPVFYH  111 (163)
Q Consensus        99 ~~~~~~iiPIf~~  111 (163)
                        .+..||||.++
T Consensus        77 --~~~~iipv~~~   87 (102)
T PF13676_consen   77 --RGKPIIPVRLD   87 (102)
T ss_dssp             --TSESEEEEECS
T ss_pred             --CCCEEEEEEEC
Confidence              45589999954

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=99.17  E-value=8e-11  Score=101.38  Aligned_cols=105  Identities=26%  Similarity=0.439  Sum_probs=84.2

Q ss_pred             CCCceeeEEEecccccCchhHHHHHHHHHhcCCceeeecC-cccccccCchhHHHhhhhcceEEEEEecCCc----C---
Q 044964           12 VPQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDN-QLIRGEDISPSLLDAIERSKISVVIFSKGYA----S---   83 (163)
Q Consensus        12 ~~~~~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~-~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~----~---   83 (163)
                      +.+++.||||||++.- ....++-|...|+-+|++||+|- .+..|+ +.+.+.+.|..++.+|+|++||.+    +   
T Consensus       608 ~~skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~n  685 (832)
T KOG3678|consen  608 MLSKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDN  685 (832)
T ss_pred             cccCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhcccc
Confidence            5678899999998764 46799999999999999999998 777776 567999999999999999999975    3   


Q ss_pred             -chhhHHHHHHHHHhhhhcCceeEeEEee---------eCCcccccccc
Q 044964           84 -SGWCLEELVKILECKDKYGQIVIPVFYH---------VEPSNVRNQTG  122 (163)
Q Consensus        84 -S~wc~~El~~~~~~~~~~~~~iiPIf~~---------v~p~~v~~~~~  122 (163)
                       -.|..+||.-+.++.    ..|||||-.         +.|.|++..+.
T Consensus       686 CeDWVHKEl~~Afe~~----KNIiPI~D~aFE~Pt~ed~iPnDirmi~k  730 (832)
T KOG3678|consen  686 CEDWVHKELKCAFEHQ----KNIIPIFDTAFEFPTKEDQIPNDIRMITK  730 (832)
T ss_pred             HHHHHHHHHHHHHHhc----CCeeeeecccccCCCchhcCcHHHHHHHh
Confidence             356666777666654    489999843         56667766554

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=98.76  E-value=1.5e-08  Score=73.72  Aligned_cols=89  Identities=24%  Similarity=0.385  Sum_probs=47.9

Q ss_pred             eeEEEecccccCchhHHHHHHHHHhcC-------Ccee-ee---------cC-cccccccCchhHHHhhhhcceEEEEEe
Q 044964           17 YDVFLSFRGEDTRDNFTSHLYAALCRK-------KIET-FI---------DN-QLIRGEDISPSLLDAIERSKISVVIFS   78 (163)
Q Consensus        17 ydVFISys~~D~~~~fv~~L~~~L~~~-------gi~v-f~---------d~-~~~~G~~~~~~i~~aI~~S~~~IvvlS   78 (163)
                      |.|||||++.|.. ..+..|...+...       .+.. |.         +. +....+.+...|.+.|.+|.++||+++
T Consensus         1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig   79 (130)
T PF08937_consen    1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG   79 (130)
T ss_dssp             ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred             CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence            5799999998842 3777777777662       2211 11         11 222334678899999999999999999


Q ss_pred             cCCcCchhhHHHHHHHHHhhhhcCceeEeEEe
Q 044964           79 KGYASSGWCLEELVKILECKDKYGQIVIPVFY  110 (163)
Q Consensus        79 ~~y~~S~wc~~El~~~~~~~~~~~~~iiPIf~  110 (163)
                      ++...|+|+..|+..+++    .+..||-|.+
T Consensus        80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~~  107 (130)
T PF08937_consen   80 PNTAKSKWVNWEIEYALK----KGKPIIGVYL  107 (130)
T ss_dssp             TT----HHHHHHHHHHTT----T---EEEEET
T ss_pred             CCcccCcHHHHHHHHHHH----CCCCEEEEEC
Confidence            999999999999999876    4557888765

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=98.19  E-value=1e-05  Score=59.75  Aligned_cols=64  Identities=19%  Similarity=0.351  Sum_probs=52.9

Q ss_pred             eEEEecccccCc-hhHHHHHHHHHhcC-CceeeecC-cccc--cccCchhHHHhhhhcceEEEEEecCC
Q 044964           18 DVFLSFRGEDTR-DNFTSHLYAALCRK-KIETFIDN-QLIR--GEDISPSLLDAIERSKISVVIFSKGY   81 (163)
Q Consensus        18 dVFISys~~D~~-~~fv~~L~~~L~~~-gi~vf~d~-~~~~--G~~~~~~i~~aI~~S~~~IvvlS~~y   81 (163)
                      -|||||++.... ...|..|...|++. |+.|.+|. +...  +..+..=+.+.+++++.+|+|+||.+
T Consensus         2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~   70 (150)
T PF08357_consen    2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY   70 (150)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence            499999985432 36799999999999 99999999 7743  66677777888999999999999654

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=97.31  E-value=0.00075  Score=49.05  Aligned_cols=96  Identities=19%  Similarity=0.157  Sum_probs=68.5

Q ss_pred             eEEEecccccCchhHHHHHHHHHhcCCceeeecC-cccccccCchhHHHhhhhcceEEEEEecCCc-------------C
Q 044964           18 DVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDN-QLIRGEDISPSLLDAIERSKISVVIFSKGYA-------------S   83 (163)
Q Consensus        18 dVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~-~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~-------------~   83 (163)
                      .|||.|+ .|.  ..+..+...|+..|+.+..-. ....|..+.+.+.+.+.+++..|++++|+=.             .
T Consensus         1 kVFIvhg-~~~--~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~a   77 (125)
T PF10137_consen    1 KVFIVHG-RDL--AAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPRA   77 (125)
T ss_pred             CEEEEeC-CCH--HHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCcccccccc
Confidence            3899998 553  688899999998888765544 6689999999999999999999999998522             2


Q ss_pred             chhhHHHHHHHHHhhhhcCceeEeEEee--eCCcccc
Q 044964           84 SGWCLEELVKILECKDKYGQIVIPVFYH--VEPSNVR  118 (163)
Q Consensus        84 S~wc~~El~~~~~~~~~~~~~iiPIf~~--v~p~~v~  118 (163)
                      -.....|+..++.+.  +..+++-+.-+  -.|+|+.
T Consensus        78 R~NVifE~G~f~g~L--Gr~rv~~l~~~~v~~PSDl~  112 (125)
T PF10137_consen   78 RQNVIFELGLFIGKL--GRERVFILVKGGVELPSDLS  112 (125)
T ss_pred             ccceeehhhHHHhhc--CcceEEEEEcCCccCCcccC
Confidence            345677888887643  23344444321  2455553

Their exact function has not, as yet, been defined.

>PF13271 DUF4062: Domain of unknown function (DUF4062)

Probab=94.33  E-value=0.16  Score=33.85  Aligned_cols=67  Identities=19%  Similarity=0.180  Sum_probs=48.3

Q ss_pred             eEEEecccccCchhHHHHHHHHHhcCCceeeecCccc-ccccCchhHHHhhhhcceEEEEEecCCcCch
Q 044964           18 DVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLI-RGEDISPSLLDAIERSKISVVIFSKGYASSG   85 (163)
Q Consensus        18 dVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~~~~-~G~~~~~~i~~aI~~S~~~IvvlS~~y~~S~   85 (163)
                      .||||-.-.|.. .--..|...|.+.|+.+..-+.+. .+....+.+.+.|++|+++|.++-..|-..+
T Consensus         1 rVFiSSt~~Dl~-~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~~   68 (83)
T PF13271_consen    1 RVFISSTFRDLK-EERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYGSVP   68 (83)
T ss_pred             CEEEecChhhHH-HHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccCCCC
Confidence            389998777763 455677788877777654433222 2455567889999999999999999997543

>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2

Probab=93.05  E-value=0.73  Score=32.16  Aligned_cols=67  Identities=15%  Similarity=0.056  Sum_probs=49.7

Q ss_pred             hhHHHHHHHHHhcCCceeeecC--ccc---cc----ccCchhHHHhhhhcceEEEEEecCCcCchhhHHHHHHHHHh
Q 044964           30 DNFTSHLYAALCRKKIETFIDN--QLI---RG----EDISPSLLDAIERSKISVVIFSKGYASSGWCLEELVKILEC   97 (163)
Q Consensus        30 ~~fv~~L~~~L~~~gi~vf~d~--~~~---~G----~~~~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~~~~   97 (163)
                      ..+...+.+.|++.|+.++...  +..   .+    ..+.+.-.++|++|+++|+++.+.- .+.-+..|+..|...
T Consensus        13 ~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~~-~d~Gt~~ElG~A~al   88 (113)
T PF05014_consen   13 KARVERLREALEKNGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGFR-PDSGTAFELGYAYAL   88 (113)
T ss_dssp             HHHHHHHHHHHHTTTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSSS---HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCcHHHHHHHHHHC
Confidence            5688999999999999988765  221   12    3344455678999999999998766 567788999998653

4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....

>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]

Probab=93.05  E-value=0.13  Score=41.90  Aligned_cols=101  Identities=17%  Similarity=0.156  Sum_probs=68.6

Q ss_pred             CCCceeeEEEecccccCchhHHHHHHHHHhc--CCceeeecCc----ccccccCchhHHHhh-hhcceEEEEEecCCcCc
Q 044964           12 VPQVKYDVFLSFRGEDTRDNFTSHLYAALCR--KKIETFIDNQ----LIRGEDISPSLLDAI-ERSKISVVIFSKGYASS   84 (163)
Q Consensus        12 ~~~~~ydVFISys~~D~~~~fv~~L~~~L~~--~gi~vf~d~~----~~~G~~~~~~i~~aI-~~S~~~IvvlS~~y~~S   84 (163)
                      ...+.||+=|||.++-  +..|++...+++.  ..+..|+|-+    +-+| ++.+-+...- ..|+..++.+..+|...
T Consensus       173 ~~~~~~DiG~SFaGEA--R~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~-sL~~~L~~~Y~~rC~~~~VF~~~~Y~~K  249 (329)
T COG4916         173 SSEKPVDSGISFAGEA--RNLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPG-SLVSTLDPGYDIRCVVTTVFNTGSYICK  249 (329)
T ss_pred             ccccccceeeEeehhh--hhHHHHHHHhhhcccCCceeeeechhhccccCc-cHHHhcccccCceEEEEEEEeCCceEEe
Confidence            4567899999999875  4799999999994  4566788762    2233 3332333332 36888889999999999


Q ss_pred             hhhHHHHHHHHHhhhhcCceeEeEEe-eeCCccc
Q 044964           85 GWCLEELVKILECKDKYGQIVIPVFY-HVEPSNV  117 (163)
Q Consensus        85 ~wc~~El~~~~~~~~~~~~~iiPIf~-~v~p~~v  117 (163)
                      .||..|...+-+..  .-+.+.||.| ++..+-+
T Consensus       250 ~~c~~E~~~~r~~~--~~d~~~rI~~~~~d~~a~  281 (329)
T COG4916         250 STCHIEGLEGRLNP--ILDTGFRIKYLYADNIAI  281 (329)
T ss_pred             eeeccchhhccccc--cccccceEEEEecCCccc
Confidence            99999987764321  2245677766 3444433

>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]

Probab=90.98  E-value=0.89  Score=35.72  Aligned_cols=104  Identities=18%  Similarity=0.149  Sum_probs=70.1

Q ss_pred             CCCCCCceeeEEEecccccCchhHHHHHHHHHhcC--CceeeecCcccccccCchhHHHhhhhcceEEEEEecCCc----
Q 044964            9 TATVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRK--KIETFIDNQLIRGEDISPSLLDAIERSKISVVIFSKGYA----   82 (163)
Q Consensus         9 ~s~~~~~~ydVFISys~~D~~~~fv~~L~~~L~~~--gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~----   82 (163)
                      .|.|..+  .|||-|++ |   ..+.....+|.+.  -..+|.|.-+..|..+.+.+.+-|.+++..|++.+|+=.    
T Consensus        77 ~t~p~~k--kvFvv~gh-d---~iArael~allrd~~l~~vi~d~~~~~g~~ile~lek~i~~v~FAi~latPDDkgy~~  150 (233)
T COG4271          77 ATMPNLK--KVFVVSGH-D---AIARAELEALLRDWKLEPVILDGLFSEGQTILESLEKYIAEVKFAIVLATPDDKGYRA  150 (233)
T ss_pred             cccCCce--eEEEEecc-H---HHHHHHHHHHhhccccceEEecCcccccHHHHHHHHHHhhhceEEEEEecCccccccc
Confidence            3444444  99999976 4   3777777777643  345677777888999999999999999999999999843    


Q ss_pred             ----------CchhhHHHHHHHHHhhhhcCceeEeEEee----eCCcccccc
Q 044964           83 ----------SSGWCLEELVKILECKDKYGQIVIPVFYH----VEPSNVRNQ  120 (163)
Q Consensus        83 ----------~S~wc~~El~~~~~~~~~~~~~iiPIf~~----v~p~~v~~~  120 (163)
                                .-.....||..++.+.  ++.+|+-+.-+    --|||+...
T Consensus       151 ~~~~~k~~praRqNVifELGm~mgrL--gRkrv~Il~k~~envelPSDi~Gv  200 (233)
T COG4271         151 VHSREKAFPRARQNVIFELGMFMGRL--GRKRVMILMKRDENVELPSDIAGV  200 (233)
T ss_pred             ccchhhccccccccchhhHhhHHhhc--ccceEEEEecccccccCccccCce
Confidence                      1223566777777543  23344433321    257776543

>PF14258 DUF4350: Domain of unknown function (DUF4350)

Probab=82.74  E-value=9.5  Score=24.03  Aligned_cols=61  Identities=18%  Similarity=0.179  Sum_probs=37.4

Q ss_pred             HHHHHHHhcCCceeeecCcccccccCchhHHHhhhhcceEEEEEecCCcCchhhHHHHHHHHHhhhhcCceeE
Q 044964           34 SHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISVVIFSKGYASSGWCLEELVKILECKDKYGQIVI  106 (163)
Q Consensus        34 ~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~~~~~~~~~~~ii  106 (163)
                      ..+++.|++.|+++-...          ...+++....-++++++|.+.-+.  ..++..+.+..+.++..||
T Consensus         8 ~a~~~~L~~~g~~v~~~~----------~~~~~l~~~~~tll~i~~~~~~~~--~~~~~~l~~~v~~G~~lvl   68 (70)
T PF14258_consen    8 YALYQLLEEQGVKVERWR----------KPYEALEADDGTLLVIGPDLRLSE--PEEAEALLEWVEAGNTLVL   68 (70)
T ss_pred             HHHHHHHHHCCCeeEEec----------ccHHHhCCCCCEEEEEeCCCCCCc--hHHHHHHHHHHHcCCEEEE
Confidence            456778888898874322          113344558889999999966554  3455555554455555544

>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain

Probab=80.56  E-value=7.3  Score=25.26  Aligned_cols=61  Identities=11%  Similarity=0.141  Sum_probs=38.8

Q ss_pred             eeEEEecccccCchhHHHHHHHHHhcCCceeeecCcccccccCchhHHHhhhhcceEEEEEecCC
Q 044964           17 YDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISVVIFSKGY   81 (163)
Q Consensus        17 ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y   81 (163)
                      ++|+|...+.+. ...+..+...|++.|+++-+|.   .+.++...+..|-+.---.++++.++-
T Consensus         2 ~~v~ii~~~~~~-~~~a~~~~~~Lr~~g~~v~~d~---~~~~~~~~~~~a~~~g~~~~iiig~~e   62 (91)
T cd00860           2 VQVVVIPVTDEH-LDYAKEVAKKLSDAGIRVEVDL---RNEKLGKKIREAQLQKIPYILVVGDKE   62 (91)
T ss_pred             eEEEEEeeCchH-HHHHHHHHHHHHHCCCEEEEEC---CCCCHHHHHHHHHHcCCCEEEEECcch
Confidence            677777655433 4578899999999999998875   123555555565443333455555443

ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	163
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		2e-34
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		4e-31

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score =  140 bits (354), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/158 (44%), Positives = 109/158 (68%), Gaps = 4/158 (2%)
Query: 3   SSSFPPTATVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETF-IDNQLIRGEDISP 61
           S S  P+ + P V+Y+VFLSFRG DTR+ FT  LY +L R KI TF  D++L++G++I P
Sbjct: 22  SDSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGP 81
Query: 62  SLLDAIERSKISVVIFSKGYASSGWCLEELVKILECKDKYG-QIVIPVFYHVEPSNVRNQ 120
           +LL AI++SKI V I S GYA S WCL EL +I+  +++   +I++P+FY V+PS+VR+Q
Sbjct: 82  NLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQ 141
Query: 121 TGIFGDAFSMFEERFVGREDKLRTWRIALREAANISGF 158
           TG +  AF     +F G+   ++ W+ AL++  ++ G+
Sbjct: 142 TGCYKKAFRKHANKFDGQ--TIQNWKDALKKVGDLKGW 177

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score =  130 bits (327), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 70/146 (47%), Positives = 93/146 (63%), Gaps = 7/146 (4%)
Query: 15  VKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDN-QLIRGEDISPSLLDAIERSKIS 73
            KYDVFLSFRG DTR NF S LY  L R+ I TF D+ +L  G+  SP L   IE S+ +
Sbjct: 7   TKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFA 66
Query: 74  VVIFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFEE 133
           VV+ S+ YA+S WCL+ELV I++ + K    V+P+FY VEP++VR QTG+  + F    +
Sbjct: 67  VVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQF----K 122
Query: 134 RFVGRED--KLRTWRIALREAANISG 157
           +   RED  K+  WR AL   A +SG
Sbjct: 123 KHASREDPEKVLKWRQALTNFAQLSG 148

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	163
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	5e-92
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	5e-92
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	7e-75
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	8e-16
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	8e-08
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	3e-07
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
2js7_A	160	Myeloid differentiation primary response protein M	5e-04

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  264 bits (678), Expect = 5e-92
 Identities = 70/163 (42%), Positives = 106/163 (65%), Gaps = 4/163 (2%)

Query: 1   MASSSFPPTATVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQ-LIRGEDI 59
             S S  P+ + P V+Y+VFLSFRG DTR+ FT  LY +L R KI TF D+  L++G++I
Sbjct: 20  AISDSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEI 79

Query: 60  SPSLLDAIERSKISVVIFSKGYASSGWCLEELVKILECKDKYG-QIVIPVFYHVEPSNVR 118
            P+LL AI++SKI V I S GYA S WCL EL +I+  +++   +I++P+FY V+PS+VR
Sbjct: 80  GPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVR 139

Query: 119 NQTGIFGDAFSMFEERFVGREDKLRTWRIALREAANISGFDSN 161
           +QTG +  AF     +F      ++ W+ AL++  ++ G+   
Sbjct: 140 HQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGWHIG 180

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  264 bits (676), Expect = 5e-92
 Identities = 71/162 (43%), Positives = 94/162 (58%), Gaps = 11/162 (6%)

Query: 1   MASSSFPPTATVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQ-LIRGEDI 59
           M+S            KYDVFLSFRG DTR NF S LY  L R+ I TF D++ L  G+  
Sbjct: 1   MSSH--------TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRF 52

Query: 60  SPSLLDAIERSKISVVIFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRN 119
           SP L   IE S+ +VV+ S+ YA+S WCL+ELV I++ + K    V+P+FY VEP++VR 
Sbjct: 53  SPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRW 112

Query: 120 QTGIFGDAFSMFEERFVGREDKLRTWRIALREAANISGFDSN 161
           QTG+  + F     R     +K+  WR AL   A +SG  S 
Sbjct: 113 QTGVLAEQFKKHASRE--DPEKVLKWRQALTNFAQLSGDCSG 152

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  219 bits (561), Expect = 7e-75
 Identities = 25/149 (16%), Positives = 57/149 (38%), Gaps = 4/149 (2%)

Query: 2   ASSSFPPTATVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQ-LIRGEDIS 60
            +             +D+F+S   ED + +F   L   L     E + D+  L  G+ + 
Sbjct: 6   TAGPTTNADLTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLR 64

Query: 61  PSLLDAIERSKISVVIFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRNQ 120
            S+   +  S+  +V+ S  +    W  +EL  + + +      ++P+++ V    V + 
Sbjct: 65  RSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASF 124

Query: 121 TGIFGDAFSMFEERFVGREDKLRTWRIAL 149
           +    D  +          D++    +A+
Sbjct: 125 SPTMADKLAFNTSTK--SVDEIVADLMAI 151

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 68.9 bits (169), Expect = 8e-16
 Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 9/123 (7%)

Query: 8   PTATVPQVKYDVFLSFRGEDTRDNFTSHLYAAL--CRKKIETFIDNQ-LIRGEDISPSLL 64
           P ++     YDV +    ED        L + L      +  F+  +    G  I   L 
Sbjct: 2   PGSSRWSKDYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELC 59

Query: 65  DAIERSKISVVIFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVE----PSNVRNQ 120
            A+  S   V++ + G+    WC  ++++ L          IP+   +     P  +R  
Sbjct: 60  QALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFM 119

Query: 121 TGI 123
             +
Sbjct: 120 YYV 122

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Length = 159

 Score = 48.2 bits (114), Expect = 8e-08
 Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 14/109 (12%)

Query: 16  KYDVFLSFRGEDTR---------DNFTSHLYAALCRKK--IETFI-DNQLIRGEDISPSL 63
            YD +LS+   D           + F   +   +  K    + FI D  LI        +
Sbjct: 2   DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDV 61

Query: 64  LDAIERSKISVVIFSKGYA-SSGWCLEELVKIL-ECKDKYGQIVIPVFY 110
              +++SK  +++ +  Y    GW + EL   L          VI +  
Sbjct: 62  ARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIEC 110

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178

 Score = 47.2 bits (112), Expect = 3e-07
 Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 16  KYDVFLSFRGEDT---RDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKI 72
           ++  F+S+   D+   ++    +L        I  + ++    G+ IS +++  IE+S  
Sbjct: 35  RFHAFISYSEHDSLWVKNELIPNLEKEDGSILICLY-ESYFDPGKSISENIVSFIEKSYK 93

Query: 73  SVVIFSKGYASSGWCLEEL 91
           S+ + S  +  + WC  E 
Sbjct: 94  SIFVLSPNFVQNEWCHYEF 112

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A Length = 149

 Score = 42.5 bits (100), Expect = 8e-06
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 4/81 (4%)

Query: 14 QVKYDVFLSFRGEDT---RDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERS 70
           + YD F+S+   D     +     L       K+        I G+ I  +++D+IE+S
Sbjct: 3  NIXYDAFVSYSERDAYWVENLMVQELENFNPPFKLX-LHKRDFIHGKWIIDNIIDSIEKS 61

Query: 71 KISVVIFSKGYASSGWCLEEL 91
            +V + S+ +  S W   EL
Sbjct: 62 HKTVFVLSENFVKSEWXKYEL 82

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 1e-04
 Identities = 28/163 (17%), Positives = 53/163 (32%), Gaps = 45/163 (27%)

Query: 14  QVKY-DVFLSFRGEDTRDNFTSHLYAALCRKKIETF---------IDNQLIRGEDISPS- 62
           Q +Y D+   F      D F  +     C K ++           ID+ ++  + +S + 
Sbjct: 15  QYQYKDILSVFE-----DAFVDNFD---C-KDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65

Query: 63  -LLDAIERSKISVV------IFSKGYASSGWCLEELVKILECKDKYGQIVIPVFYHVEPS 115
            L   +   +  +V      +    Y    + +  +    E +       + +       
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINY---KFLMSPIKT--EQRQPSMMTRMYIEQRDRLY 120

Query: 116 NVRNQTGIFGDAFSMFEERFVGRED---KLRTWRIALREAANI 155
           N  NQ         +F +  V R     KLR   + LR A N+
Sbjct: 121 ND-NQ---------VFAKYNVSRLQPYLKLRQALLELRPAKNV 153

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 41/110 (37%)

Query: 5   SFPPTATVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIR--------- 55
             P        KYD +L F    ++D                T++ N L++         
Sbjct: 659 DHPQGTEPDMYKYDAYLCF---SSKD---------------FTWVQNALLKHLDTQYSDQ 700

Query: 56  --------------GEDISPSLLDAIERSKISVVIFSKGYASSGWCLEEL 91
                         GE+   ++ DAI  S+  V + S+ +   GWCLE  
Sbjct: 701 NRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGWCLEAF 750

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A Length = 160

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 7/100 (7%)

Query: 16  KYDVFLSFRGEDTR--DNFTSHLYAALCRKKIETFIDNQ-LIRGEDISPSLLDAIER-SK 71
           ++D F+ +   D +        L     R K+   + ++ ++ G  +     + IE+  +
Sbjct: 16  RFDAFICYCPSDIQFVQEMIRQLEQTNYRLKL--CVSDRDVLPGTCVWSIASELIEKRCR 73

Query: 72  ISVVIFSKGYASSGWCLEELVKIL-ECKDKYGQIVIPVFY 110
             VV+ S  Y  S  C  +    L      + + +IP+ Y
Sbjct: 74  RMVVVVSDDYLQSKECDFQTKFALSLSPGAHQKRLIPIKY 113

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	163
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	100.0
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	100.0
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.96
2js7_A	160	Myeloid differentiation primary response protein M	99.93
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.93
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.93
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.92
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.79
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	98.38
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	97.1
2f62_A	161	Nucleoside 2-deoxyribosyltransferase; SGPP, struct	92.85
2khz_A	165	C-MYC-responsive protein RCL; flexible loop, nucle	92.25
4fyk_A	152	Deoxyribonucleoside 5'-monophosphate N-glycosidas;	84.59

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=100.00  E-value=2.1e-53  Score=329.89  Aligned_cols=160  Identities=44%  Similarity=0.829  Sum_probs=140.1

Q ss_pred             CCCCCC-CCCCCCCCceeeEEEecccccCchhHHHHHHHHHhcCCceeeecC-cccccccCchhHHHhhhhcceEEEEEe
Q 044964            1 MASSSF-PPTATVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDN-QLIRGEDISPSLLDAIERSKISVVIFS   78 (163)
Q Consensus         1 ~~~~~~-~~~s~~~~~~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~-~~~~G~~~~~~i~~aI~~S~~~IvvlS   78 (163)
                      ||++++ +||++++.++||||||||++|+|+.|+.+|+.+|+++||++|+|+ ++++|+.|.++|.+||++|+++|+|||
T Consensus        19 ~~~~~s~~~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S   98 (204)
T 3ozi_A           19 DAISDSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIIS   98 (204)
T ss_dssp             ---------------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEEC
T ss_pred             cccccCCCCcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEE
Confidence            355555 567778899999999999999988999999999999999999998 999999999999999999999999999


Q ss_pred             cCCcCchhhHHHHHHHHHhhhh-cCceeEeEEeeeCCccccccccchHHHHHHHHHhccCChhHHHHHHHHHHHhhcccc
Q 044964           79 KGYASSGWCLEELVKILECKDK-YGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFEERFVGREDKLRTWRIALREAANISG  157 (163)
Q Consensus        79 ~~y~~S~wc~~El~~~~~~~~~-~~~~iiPIf~~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~~g  157 (163)
                      +||+.|+||++||..|++|.++ ++++||||||+|+|++||+|+|.||++|.++.+++  +++++++||.||++|++++|
T Consensus        99 ~nYa~S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG  176 (204)
T 3ozi_A           99 SGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKG  176 (204)
T ss_dssp             TTGGGCHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCB
T ss_pred             cccccCcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhh--CHHHHHHHHHHHHHHhccCc
Confidence            9999999999999999999865 57899999999999999999999999999998877  47899999999999999999


Q ss_pred             ccccC
Q 044964          158 FDSNT  162 (163)
Q Consensus       158 ~~~~~  162 (163)
                      |++.+
T Consensus       177 ~~~~~  181 (204)
T 3ozi_A          177 WHIGK  181 (204)
T ss_dssp             EEECT
T ss_pred             eecCC
Confidence            99864

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=1.3e-51  Score=314.21  Aligned_cols=149  Identities=46%  Similarity=0.783  Sum_probs=126.5

Q ss_pred             CCCCceeeEEEecccccCchhHHHHHHHHHhcCCceeeecC-cccccccCchhHHHhhhhcceEEEEEecCCcCchhhHH
Q 044964           11 TVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDN-QLIRGEDISPSLLDAIERSKISVVIFSKGYASSGWCLE   89 (163)
Q Consensus        11 ~~~~~~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~-~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~   89 (163)
                      ++..++||||||||++|+|++|+++|+.+|+++||++|+|+ ++.+|+.|.++|.+||++|+++|+|||+||++|+||++
T Consensus         3 ss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~   82 (176)
T 3jrn_A            3 SHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLD   82 (176)
T ss_dssp             ----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHH
T ss_pred             CCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHH
Confidence            44678999999999999988999999999999999999998 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhcCceeEeEEeeeCCccccccccchHHHHHHHHHhccCChhHHHHHHHHHHHhhcccccccc
Q 044964           90 ELVKILECKDKYGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFEERFVGREDKLRTWRIALREAANISGFDSN  161 (163)
Q Consensus        90 El~~~~~~~~~~~~~iiPIf~~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~~g~~~~  161 (163)
                      ||..+++|.++++++||||||+|+|++||+|+|.||++|.++.++  .+.+++++||.||++|++++|+++.
T Consensus        83 EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~  152 (176)
T 3jrn_A           83 ELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG  152 (176)
T ss_dssp             HHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred             HHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC
Confidence            999999999888999999999999999999999999999999887  4689999999999999999999873

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=100.00  E-value=4.2e-37  Score=229.54  Aligned_cols=136  Identities=18%  Similarity=0.305  Sum_probs=118.6

Q ss_pred             CCCCceeeEEEecccccCchhHHHHHHHHHhcCCceeeecC-cccccccCchhHHHhhhhcceEEEEEecCCcCchhhHH
Q 044964           11 TVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDN-QLIRGEDISPSLLDAIERSKISVVIFSKGYASSGWCLE   89 (163)
Q Consensus        11 ~~~~~~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~-~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~   89 (163)
                      ..+.++|||||||+++| +..|+.+|+.+|+++|+++|+|+ ++.+|+.|.++|.++|++|+++|+|+||+|++|.||+.
T Consensus        15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~   93 (154)
T 3h16_A           15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK   93 (154)
T ss_dssp             ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred             cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence            45679999999999999 45799999999999999999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhcCceeEeEEeeeCCccccccccchHHHHHHHHHhccCChhHHHHHHHHHHHh
Q 044964           90 ELVKILECKDKYGQIVIPVFYHVEPSNVRNQTGIFGDAFSMFEERFVGREDKLRTWRIALREA  152 (163)
Q Consensus        90 El~~~~~~~~~~~~~iiPIf~~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v  152 (163)
                      ||..++++...++++||||||+++|++|++|.|.|++.|.....     ...+.++-..|.++
T Consensus        94 El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~-----~~~~~~ia~~l~~l  151 (154)
T 3h16_A           94 ELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTS-----TKSVDEIVADLMAI  151 (154)
T ss_dssp             HHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETT-----TSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcC-----cccHHHHHHHHHHH
Confidence            99999998777788999999999999999999999987764322     33455555555554

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.96  E-value=4.2e-31  Score=195.88  Aligned_cols=133  Identities=17%  Similarity=0.275  Sum_probs=93.5

Q ss_pred             CCCCCCCceeeEEEecccccCchhHHHHHHHHHhc--CCceeeecC-cccccccCchhHHHhhhhcceEEEEEecCCcCc
Q 044964            8 PTATVPQVKYDVFLSFRGEDTRDNFTSHLYAALCR--KKIETFIDN-QLIRGEDISPSLLDAIERSKISVVIFSKGYASS   84 (163)
Q Consensus         8 ~~s~~~~~~ydVFISys~~D~~~~fv~~L~~~L~~--~gi~vf~d~-~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~~S   84 (163)
                      |+|...++.|||||||+++|+  .||.+|..+|++  .|+++|+++ |+.||+.+.++|.++|++|+++|+|+||+|++|
T Consensus         2 ~~~~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S   79 (146)
T 3ub2_A            2 PGSSRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQD   79 (146)
T ss_dssp             --CCTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHC
T ss_pred             CCCCCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccC
Confidence            456677889999999999996  589999999998  599999998 999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHhhhhcCceeEeEEeeeCCccccc----cccc----hHHHHHHHHHhccCChhHHHHHHHHH
Q 044964           85 GWCLEELVKILECKDKYGQIVIPVFYHVEPSNVRN----QTGI----FGDAFSMFEERFVGREDKLRTWRIAL  149 (163)
Q Consensus        85 ~wc~~El~~~~~~~~~~~~~iiPIf~~v~p~~v~~----~~~~----f~~~f~~~~~~~~~~~~~~~~W~~al  149 (163)
                      .||+.|+..|+.+...+..+|||||++++++++..    ....    ....|..+       .+.+.+|+.||
T Consensus        80 ~wc~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l-------~~~v~~~~~~~  145 (146)
T 3ub2_A           80 PWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQV-------KEAVMRYLQTL  145 (146)
T ss_dssp             HHHHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHH-------HHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHH-------HHHHHHHHHhc
Confidence            99999999999876333447889999887665543    3221    12333322       46778888775

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.93  E-value=1.3e-26  Score=173.95  Aligned_cols=102  Identities=19%  Similarity=0.286  Sum_probs=91.3

Q ss_pred             CCCCCceeeEEEecccccCchhHHHHHHHHHhcC--CceeeecC-cccccccCchhHHHhhh-hcceEEEEEecCCcCch
Q 044964           10 ATVPQVKYDVFLSFRGEDTRDNFTSHLYAALCRK--KIETFIDN-QLIRGEDISPSLLDAIE-RSKISVVIFSKGYASSG   85 (163)
Q Consensus        10 s~~~~~~ydVFISys~~D~~~~fv~~L~~~L~~~--gi~vf~d~-~~~~G~~~~~~i~~aI~-~S~~~IvvlS~~y~~S~   85 (163)
                      ..+.++.|||||||+++|  ..||.+|..+|++.  |+++|+|+ |+.||+.+.++|.++|+ +|+++|+|+||+|++|.
T Consensus        10 ~~~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~   87 (160)
T 2js7_A           10 LGHMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSK   87 (160)
T ss_dssp             TSCCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSH
T ss_pred             CCCCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCH
Confidence            344568899999999999  47999999999984  69999998 99999999999999999 79999999999999999


Q ss_pred             hhHHHHHHHHHhh-hhcCceeEeEEeeeC
Q 044964           86 WCLEELVKILECK-DKYGQIVIPVFYHVE  113 (163)
Q Consensus        86 wc~~El~~~~~~~-~~~~~~iiPIf~~v~  113 (163)
                      ||+.|+..|+++. .+++.+||||+|+.-
T Consensus        88 wc~~El~~a~~~~~~~~~~~vIpV~~~~~  116 (160)
T 2js7_A           88 ECDFQTKFALSLSPGAHQKRLIPIKYKAM  116 (160)
T ss_dssp             HHHHHHHHHHHHCTTHHHHTEEEEESSCC
T ss_pred             HHHHHHHHHHHHHHccCCCEEEEEEEccc
Confidence            9999999999875 445679999999643

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.93  E-value=2.6e-27  Score=175.76  Aligned_cols=104  Identities=21%  Similarity=0.378  Sum_probs=92.9

Q ss_pred             CCceeeEEEecccccCchhHHHH-HHHHHhcC--CceeeecC-cccccccCchhHHHhhhhcceEEEEEecCCcCchhhH
Q 044964           13 PQVKYDVFLSFRGEDTRDNFTSH-LYAALCRK--KIETFIDN-QLIRGEDISPSLLDAIERSKISVVIFSKGYASSGWCL   88 (163)
Q Consensus        13 ~~~~ydVFISys~~D~~~~fv~~-L~~~L~~~--gi~vf~d~-~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~~S~wc~   88 (163)
                      .++.|||||||+++|.  .||.+ |...|++.  |+++|+|+ |+.||+.+.++|.++|++|+++|+|+||+|++|.||+
T Consensus         2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~   79 (149)
T 1fyx_A            2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK   79 (149)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence            4678999999999995  79986 99999986  99999999 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-hhhhcCceeEeEEee-eCCcccc
Q 044964           89 EELVKILE-CKDKYGQIVIPVFYH-VEPSNVR  118 (163)
Q Consensus        89 ~El~~~~~-~~~~~~~~iiPIf~~-v~p~~v~  118 (163)
                      .|+..|+. +.++++.+||||||+ +.+..+.
T Consensus        80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~p  111 (149)
T 1fyx_A           80 YELDFSHFRLFDENNDAAILILLEPIEKKAIP  111 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred             HHHHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence            99999985 345667899999994 6665554

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.93  E-value=1e-26  Score=177.41  Aligned_cols=108  Identities=18%  Similarity=0.318  Sum_probs=90.1

Q ss_pred             CCCCCceeeEEEecccccCchhHHHH-HHHHHhc--CCceeeecC-cccccccCchhHHHhhhhcceEEEEEecCCcCch
Q 044964           10 ATVPQVKYDVFLSFRGEDTRDNFTSH-LYAALCR--KKIETFIDN-QLIRGEDISPSLLDAIERSKISVVIFSKGYASSG   85 (163)
Q Consensus        10 s~~~~~~ydVFISys~~D~~~~fv~~-L~~~L~~--~gi~vf~d~-~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~~S~   85 (163)
                      ....++.|||||||+++|.  .||.. |...|++  .|+++|+|+ |+.||+.+.++|.++|++|+++|+|+||+|++|.
T Consensus        29 ~~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~  106 (178)
T 2j67_A           29 QLKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNE  106 (178)
T ss_dssp             -CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHT
T ss_pred             ccCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccc
Confidence            3457789999999999995  79975 9999998  899999999 9999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhh-hhcCceeEeEEee-eCCccccc
Q 044964           86 WCLEELVKILECK-DKYGQIVIPVFYH-VEPSNVRN  119 (163)
Q Consensus        86 wc~~El~~~~~~~-~~~~~~iiPIf~~-v~p~~v~~  119 (163)
                      ||+.|+..|+++. ++++++||||||+ +.+.++..
T Consensus       107 wc~~El~~a~~~~~~~~~~~vIpV~~~~i~~~~lp~  142 (178)
T 2j67_A          107 WCHYEFYFAHHNLFHENSDHIILILLEPIPFYCIPT  142 (178)
T ss_dssp             GGGTHHHHTTCC-------CEEEEESSCCCGGGSCT
T ss_pred             hHHHHHHHHHHHHHhcCCCEEEEEEecCCChHHCCh
Confidence            9999999998653 5567799999995 55554443

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.92  E-value=9e-26  Score=169.26  Aligned_cols=100  Identities=21%  Similarity=0.316  Sum_probs=88.4

Q ss_pred             ceeeEEEecccccC---------chhHHHHHHH-HHh-cCCceeeecC-cccccccCchhHHHhhhhcceEEEEEecCCc
Q 044964           15 VKYDVFLSFRGEDT---------RDNFTSHLYA-ALC-RKKIETFIDN-QLIRGEDISPSLLDAIERSKISVVIFSKGYA   82 (163)
Q Consensus        15 ~~ydVFISys~~D~---------~~~fv~~L~~-~L~-~~gi~vf~d~-~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~   82 (163)
                      +.|||||||+++|.         ++.||.+|.. .|+ +.|+++|+|+ |+.||+.+.++|.++|++|+.+|+|+||+|+
T Consensus         1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~   80 (159)
T 1t3g_A            1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV   80 (159)
T ss_dssp             CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred             CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence            47999999999996         3578888665 699 7999999999 9999999999999999999999999999997


Q ss_pred             -CchhhHHHHHHHHHhh-hhcCceeEeEEeeeCC
Q 044964           83 -SSGWCLEELVKILECK-DKYGQIVIPVFYHVEP  114 (163)
Q Consensus        83 -~S~wc~~El~~~~~~~-~~~~~~iiPIf~~v~p  114 (163)
                       .|.||+.|+..|+.+. .+++.+||||++.-.+
T Consensus        81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~  114 (159)
T 1t3g_A           81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR  114 (159)
T ss_dssp             HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred             hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence             9999999999999875 5667899999986333

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.79  E-value=6.1e-20  Score=166.39  Aligned_cols=100  Identities=23%  Similarity=0.399  Sum_probs=90.2

Q ss_pred             CCCCceeeEEEecccccCchhHH-HHHHHHHhc-----CCceeeecC-cccccccCchhHHHhhhhcceEEEEEecCCcC
Q 044964           11 TVPQVKYDVFLSFRGEDTRDNFT-SHLYAALCR-----KKIETFIDN-QLIRGEDISPSLLDAIERSKISVVIFSKGYAS   83 (163)
Q Consensus        11 ~~~~~~ydVFISys~~D~~~~fv-~~L~~~L~~-----~gi~vf~d~-~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~~   83 (163)
                      ....++|||||||+++|.  .|| ..|...|+.     .|+++|+++ |+.||+.+.++|.++|++||++|+|+|++|+.
T Consensus       665 ~~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~  742 (844)
T 3j0a_A          665 EPDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLR  742 (844)
T ss_dssp             SSSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHH
T ss_pred             cccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEecccccc
Confidence            345789999999999995  687 779999985     589999999 99999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHhh-hhcCceeEeEEeee
Q 044964           84 SGWCLEELVKILECK-DKYGQIVIPVFYHV  112 (163)
Q Consensus        84 S~wc~~El~~~~~~~-~~~~~~iiPIf~~v  112 (163)
                      |+||..|+..|+.+. ++++++||||||+-
T Consensus       743 s~wc~~e~~~a~~~~~~~~~~~~i~i~~~~  772 (844)
T 3j0a_A          743 DGWCLEAFSYAQGRCLSDLNSALIMVVVGS  772 (844)
T ss_dssp             HTSTTHHHHHHHSCCCCSSCTTEEEEESSC
T ss_pred             ChHHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence            999999999998764 66778999999963

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=98.38  E-value=5.7e-07  Score=63.10  Aligned_cols=72  Identities=11%  Similarity=0.041  Sum_probs=53.3

Q ss_pred             ceeeEEEecccccCchhHHHHHHHHHhcCCceeeecCcccccccCchhHHHhhhhcceEEEEEecCCcCchhhHHHHHHH
Q 044964           15 VKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISVVIFSKGYASSGWCLEELVKI   94 (163)
Q Consensus        15 ~~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~   94 (163)
                      .+|.+||||+.+| .   ...|...|.+.|+..-            +   +.|+.|.++|++.++...+|+||..|+..|
T Consensus         3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~~~------------~---~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A   63 (111)
T 1eiw_A            3 AEIRLYITEGEVE-D---YRVFLERLEQSGLEWR------------P---ATPEDADAVIVLAGLWGTRRDEILGAVDLA   63 (111)
T ss_dssp             CCEEEEECCCCSH-H---HHHHHHHHHHHCSCEE------------E---CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred             ceEEEEEecccHh-H---HHHHHHHHhCCCCeee------------c---CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence            4799999999888 2   3344444434455321            1   789999999999999999999999999888


Q ss_pred             HHhhhhcCceeEeEE
Q 044964           95 LECKDKYGQIVIPVF  109 (163)
Q Consensus        95 ~~~~~~~~~~iiPIf  109 (163)
                      .+    .+..||-|.
T Consensus        64 ~~----~gkpIigV~   74 (111)
T 1eiw_A           64 RK----SSKPIITVR   74 (111)
T ss_dssp             TT----TTCCEEEEC
T ss_pred             HH----cCCCEEEEE
Confidence            54    445666665

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=97.10  E-value=0.0036  Score=47.26  Aligned_cols=103  Identities=18%  Similarity=0.172  Sum_probs=68.2

Q ss_pred             ccccCchhHHHHHHHHHhcCCceeeecC-ccc-------c-cccCchhHHHhhhhcceEEEEEecCCcCchhhHHHHHHH
Q 044964           24 RGEDTRDNFTSHLYAALCRKKIETFIDN-QLI-------R-GEDISPSLLDAIERSKISVVIFSKGYASSGWCLEELVKI   94 (163)
Q Consensus        24 s~~D~~~~fv~~L~~~L~~~gi~vf~d~-~~~-------~-G~~~~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~   94 (163)
                      ..+|.  .+...|..--.+..+-.|.|- +..       . -..|...+.+.|+.|+.+|+++|++...|.|...|+..+
T Consensus        27 a~~Di--~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A  104 (189)
T 3hyn_A           27 STHDF--VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG  104 (189)
T ss_dssp             GSTTH--HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             ccchH--HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence            44453  466677666666555556665 431       2 234777889999999999999999999999999999998


Q ss_pred             HHhhhhcCceeEeEEeeeC-CccccccccchHHHHHHH
Q 044964           95 LECKDKYGQIVIPVFYHVE-PSNVRNQTGIFGDAFSMF  131 (163)
Q Consensus        95 ~~~~~~~~~~iiPIf~~v~-p~~v~~~~~~f~~~f~~~  131 (163)
                      ++   +.+.+||-|..+-. .+++..-.|.|......+
T Consensus       105 i~---~~~~PII~Vy~~~~~~~~i~~~~g~~~~~~~~~  139 (189)
T 3hyn_A          105 IG---TKGLPVIVIYPDYDKKSDIVDSNGNFKKQIKDL  139 (189)
T ss_dssp             TT---TTCCCEEEEETTCCSGGGTBCTTSCBCHHHHHH
T ss_pred             HH---hcCCcEEEEECCccccchhhhccccchhhHhhc
Confidence            72   34568888775422 334444344444333333

>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*

Probab=92.85  E-value=0.51  Score=34.52  Aligned_cols=83  Identities=11%  Similarity=0.062  Sum_probs=56.3

Q ss_pred             ceeeEEEecc--cccCchhHHHHHHHHHhcCCceeeecCc--ccccccCchhHHHhhhhcceEEEEEec--CCcCchhhH
Q 044964           15 VKYDVFLSFR--GEDTRDNFTSHLYAALCRKKIETFIDNQ--LIRGEDISPSLLDAIERSKISVVIFSK--GYASSGWCL   88 (163)
Q Consensus        15 ~~ydVFISys--~~D~~~~fv~~L~~~L~~~gi~vf~d~~--~~~G~~~~~~i~~aI~~S~~~IvvlS~--~y~~S~wc~   88 (163)
                      ..-.+++.-.  ..+....+..++...|++.|+.++.-.+  ......+.+.-.++|++|+++|++++|  .-..++-+.
T Consensus         9 ~~~~~y~a~~~F~~~e~~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTa   88 (161)
T 2f62_A            9 MRKIYIAGPAVFNPDMGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTA   88 (161)
T ss_dssp             CCEEEEESGGGGSTTTTHHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHH
T ss_pred             hhceEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHH
Confidence            3445555532  2233137889999999999999887432  112233444557899999999999997  444556688


Q ss_pred             HHHHHHHHh
Q 044964           89 EELVKILEC   97 (163)
Q Consensus        89 ~El~~~~~~   97 (163)
                      .|+..+...
T Consensus        89 fEiGyA~Al   97 (161)
T 2f62_A           89 FEVGCAAAL   97 (161)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHC
Confidence            899988653

>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*

Probab=92.25  E-value=1.7  Score=31.60  Aligned_cols=80  Identities=15%  Similarity=0.126  Sum_probs=52.5

Q ss_pred             CceeeEEEecccc-cCc-hhHHHHHHHHHhcCCceeeecCccc-----cccc-------CchhHHHhhhhcceEEEEEec
Q 044964           14 QVKYDVFLSFRGE-DTR-DNFTSHLYAALCRKKIETFIDNQLI-----RGED-------ISPSLLDAIERSKISVVIFSK   79 (163)
Q Consensus        14 ~~~ydVFISys~~-D~~-~~fv~~L~~~L~~~gi~vf~d~~~~-----~G~~-------~~~~i~~aI~~S~~~IvvlS~   79 (163)
                      +++..|||+=.-. +.. .....++.+.|++.| .|+.+....     .|..       +...-.+.|++|+++|++++ 
T Consensus         9 ~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~-   86 (165)
T 2khz_A            9 QAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT-   86 (165)
T ss_dssp             CCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS-
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC-
Confidence            3345699984322 211 225689999999999 886543222     2211       22333578999999999997 


Q ss_pred             CCcCchhhHHHHHHHHHh
Q 044964           80 GYASSGWCLEELVKILEC   97 (163)
Q Consensus        80 ~y~~S~wc~~El~~~~~~   97 (163)
                        ..+.-+..|+..+...
T Consensus        87 --~~d~Gt~~EiGyA~al  102 (165)
T 2khz_A           87 --QPSLGVGYELGRAVAL  102 (165)
T ss_dssp             --SCCHHHHHHHHHHHHT
T ss_pred             --CCCCCHHHHHHHHHHC
Confidence              5577799999998653

>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*

Probab=84.59  E-value=4.4  Score=29.28  Aligned_cols=76  Identities=18%  Similarity=0.219  Sum_probs=50.7

Q ss_pred             eEEEe--cccccCchhHHHHHHHHHhcCCceeeecC-c---c-cccc-------cCchhHHHhhhhcceEEEEEecCCcC
Q 044964           18 DVFLS--FRGEDTRDNFTSHLYAALCRKKIETFIDN-Q---L-IRGE-------DISPSLLDAIERSKISVVIFSKGYAS   83 (163)
Q Consensus        18 dVFIS--ys~~D~~~~fv~~L~~~L~~~gi~vf~d~-~---~-~~G~-------~~~~~i~~aI~~S~~~IvvlS~~y~~   83 (163)
                      .|||+  +++.+....+..++.+.|++.| .|+... .   + ..|+       .+.+.-.++|++|+++|.+++   ..
T Consensus         4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~   79 (152)
T 4fyk_A            4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QP   79 (152)
T ss_dssp             EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CC
Confidence            46665  2332223467799999999999 675432 1   1 1222       245566778999999999998   55


Q ss_pred             chhhHHHHHHHHHh
Q 044964           84 SGWCLEELVKILEC   97 (163)
Q Consensus        84 S~wc~~El~~~~~~   97 (163)
                      |.-...|+..+...
T Consensus        80 d~Gt~~EiG~A~al   93 (152)
T 4fyk_A           80 SLGVGYELGRAVAL   93 (152)
T ss_dssp             CHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHc
Confidence            77788899998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	163
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	5e-21
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	3e-19

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.1 bits (202), Expect = 5e-21
 Identities = 21/108 (19%), Positives = 44/108 (40%), Gaps = 3/108 (2%)

Query: 16  KYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFI-DNQLIRGEDISPSLLDAIERSKISV 74
           ++  F+S+ G D+     + L   L ++ ++  + +   + G+ I  +++  IE+S  S+
Sbjct: 12  QFHAFISYSGHDSF-WVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSI 70

Query: 75  VIFSKGYASSGWCLEELVKILECKDKYGQIV-IPVFYHVEPSNVRNQT 121
            + S  +  S WC  EL          G    I +     P      +
Sbjct: 71  FVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSS 118

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.1 bits (189), Expect = 3e-19
 Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 5/110 (4%)

Query: 15  VKYDVFLSFRGEDT---RDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSK 71
           + YD F+S+   D     +     L       K+        I G+ I  +++D+IE+S 
Sbjct: 4   ICYDAFVSYSERDAYWVENLMVQELENFNPPFKL-CLHKRDFIHGKWIIDNIIDSIEKSH 62

Query: 72  ISVVIFSKGYASSGWCLEELVKIL-ECKDKYGQIVIPVFYHVEPSNVRNQ 120
            +V + S+ +  S WC  EL        D+     I +           Q
Sbjct: 63  KTVFVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQ 112

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	163
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.91
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.9
d2f62a1	152	Nucleoside 2-deoxyribosyltransferase {Trypanosoma	93.46
d1wu7a1	97	Histidyl-tRNA synthetase (HisRS), C-terminal domai	91.27
d1s2da_	167	Purine transdeoxyribosylase {Lactobacillus helveti	86.36

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.4e-25  Score=166.38  Aligned_cols=103  Identities=18%  Similarity=0.398  Sum_probs=92.8

Q ss_pred             CCCCCCCceeeEEEecccccCchhHH-HHHHHHHhcCCceeeecC-cccccccCchhHHHhhhhcceEEEEEecCCcCch
Q 044964            8 PTATVPQVKYDVFLSFRGEDTRDNFT-SHLYAALCRKKIETFIDN-QLIRGEDISPSLLDAIERSKISVVIFSKGYASSG   85 (163)
Q Consensus         8 ~~s~~~~~~ydVFISys~~D~~~~fv-~~L~~~L~~~gi~vf~d~-~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~~S~   85 (163)
                      ..+...+++|||||||+++|.  .|| ..|...|+++|+++|+|+ ++.+|+.+.++|.++|++|+++|+|+||+|+.|.
T Consensus         4 l~~~~~~~~yDvFisys~~D~--~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~   81 (161)
T d1fyva_           4 LEELQRNLQFHAFISYSGHDS--FWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSE   81 (161)
T ss_dssp             STTSSSCCCEEEEEECCGGGH--HHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHT
T ss_pred             hhHcCCCCeeEEEEecChhHH--HHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccCh
Confidence            455677899999999999994  577 569999999999999999 9999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhh-hhcCceeEeEEeee
Q 044964           86 WCLEELVKILECK-DKYGQIVIPVFYHV  112 (163)
Q Consensus        86 wc~~El~~~~~~~-~~~~~~iiPIf~~v  112 (163)
                      ||..|+..++++. +++..++|||+++-
T Consensus        82 w~~~E~~~a~~~~~~~~~~~lIpV~l~~  109 (161)
T d1fyva_          82 WCHYELYFAHHNLFHEGSNSLILILLEP  109 (161)
T ss_dssp             SHHHHHHTTSCCCSCSSCSSEEEEESSC
T ss_pred             HHHHHHHHHHHHHHHcCCCceeEEEEec
Confidence            9999999998764 45667999999863

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.5e-25  Score=162.28  Aligned_cols=105  Identities=22%  Similarity=0.400  Sum_probs=90.6

Q ss_pred             CCCceeeEEEecccccCchhHH-HHHHHHHhc--CCceeeecC-cccccccCchhHHHhhhhcceEEEEEecCCcCchhh
Q 044964           12 VPQVKYDVFLSFRGEDTRDNFT-SHLYAALCR--KKIETFIDN-QLIRGEDISPSLLDAIERSKISVVIFSKGYASSGWC   87 (163)
Q Consensus        12 ~~~~~ydVFISys~~D~~~~fv-~~L~~~L~~--~gi~vf~d~-~~~~G~~~~~~i~~aI~~S~~~IvvlS~~y~~S~wc   87 (163)
                      +.++.|||||||+++|.  .|| ..|...|++  .|+++|+|+ ++.+|+.+.++|.++|++|+++|+|+||+|++|.||
T Consensus         1 ~~~~~YDvFiSys~~D~--~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc   78 (149)
T d1fyxa_           1 SRNICYDAFVSYSERDA--YWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWC   78 (149)
T ss_dssp             CCSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTH
T ss_pred             CCCCEEEEEEECchhhH--HHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccch
Confidence            36789999999999994  576 468999986  499999999 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh-hhcCceeEeEEee-eCCcccc
Q 044964           88 LEELVKILECK-DKYGQIVIPVFYH-VEPSNVR  118 (163)
Q Consensus        88 ~~El~~~~~~~-~~~~~~iiPIf~~-v~p~~v~  118 (163)
                      ..|+..++... ++++.++|||+++ +...++.
T Consensus        79 ~~E~~~a~~~~~~~~~~~iIpV~l~~~~~~~~~  111 (149)
T d1fyxa_          79 KYELDFSHFRLFDENNDAAILILLEPIEKKAIP  111 (149)
T ss_dssp             HHHSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred             HHHHHHHHHHHHHcCCceEEEEEeccCchhhcc
Confidence            99999887543 5677899999996 4444443

>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Trypanosoma brucei [TaxId: 5691]

Probab=93.46  E-value=0.17  Score=35.00  Aligned_cols=71  Identities=13%  Similarity=0.109  Sum_probs=53.4

Q ss_pred             cCchhHHHHHHHHHhcCCceeeecC--cccccccCchhHHHhhhhcceEEEEEec--CCcCchhhHHHHHHHHHh
Q 044964           27 DTRDNFTSHLYAALCRKKIETFIDN--QLIRGEDISPSLLDAIERSKISVVIFSK--GYASSGWCLEELVKILEC   97 (163)
Q Consensus        27 D~~~~fv~~L~~~L~~~gi~vf~d~--~~~~G~~~~~~i~~aI~~S~~~IvvlS~--~y~~S~wc~~El~~~~~~   97 (163)
                      |.+..+..++...|++.|+.++.-.  .......+.+.-.++|++|+++|.+++|  .-..++-+..|+..+...
T Consensus        15 d~~~~~~~~i~~~l~~~g~~~~~P~d~~~~~~~~If~~d~~~i~~~D~VIA~Ld~frg~~~D~GTa~EiG~A~al   89 (152)
T d2f62a1          15 DMGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAAL   89 (152)
T ss_dssp             TTTHHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHCCCEEeccccccchhHHHHHHHHHHHHHhCCEEEEEccccCCCCCCchHHHHHHHHHHC
Confidence            4445688999999999999998643  3333345666777899999999999985  233456688999998754

>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=91.27  E-value=0.27  Score=30.91  Aligned_cols=62  Identities=16%  Similarity=0.152  Sum_probs=44.2

Q ss_pred             ceeeEEEecccccCchhHHHHHHHHHhcCCceeeecCcccccccCchhHHHhhhhcceEEEEEecC
Q 044964           15 VKYDVFLSFRGEDTRDNFTSHLYAALCRKKIETFIDNQLIRGEDISPSLLDAIERSKISVVIFSKG   80 (163)
Q Consensus        15 ~~ydVFISys~~D~~~~fv~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~IvvlS~~   80 (163)
                      ...+|||..-+... ..++..|...|++.|+++-+|.   .+..+...+..|-..---+++|+-++
T Consensus         2 ~~~~V~i~~~g~~~-~~~~~~l~~~Lr~~gi~v~~d~---~~~~l~kq~~~A~~~~~~~~iiiG~~   63 (97)
T d1wu7a1           2 EKKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEI---MERGLSAQLKYASAIGADFAVIFGER   63 (97)
T ss_dssp             SSCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECC---SCCCHHHHHHHHHHTTCSEEEEEEHH
T ss_pred             CCceEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEEC---CCCcHHHHHHHHHhcCCCeEEecCCc
Confidence            35789999877765 4799999999999999999875   23455556666655444455555543

>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Purine transdeoxyribosylase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=86.36  E-value=3  Score=28.51  Aligned_cols=89  Identities=13%  Similarity=0.081  Sum_probs=55.9

Q ss_pred             eeeEEEecccc-cCchhHHHHHHHHHhcCC--ceeeecC-c-c---c-----cc--------ccCchhHHHhhhhcceEE
Q 044964           16 KYDVFLSFRGE-DTRDNFTSHLYAALCRKK--IETFIDN-Q-L---I-----RG--------EDISPSLLDAIERSKISV   74 (163)
Q Consensus        16 ~ydVFISys~~-D~~~~fv~~L~~~L~~~g--i~vf~d~-~-~---~-----~G--------~~~~~~i~~aI~~S~~~I   74 (163)
                      +..|||.=.-- +....++.++.+.|+++|  +.+|.-. + .   .     -+        +.+...-.++|++|+++|
T Consensus         7 ~~kIYLAgP~F~~~~~~~~~~~~~~L~~~~~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~If~~D~~~i~~sD~vI   86 (167)
T d1s2da_           7 TGKIYLGSPFYSDAQRERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGV   86 (167)
T ss_dssp             CEEEEEECCCSSHHHHHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEE
T ss_pred             CceEEEECCCCCHHHHHHHHHHHHHHHhCCCcceEECCcccccccccccccccccccchHHHHHHHHHHHHHHHHCCEEE
Confidence            46677763210 123468899999999987  5666421 1 1   0     01        113334557899999999


Q ss_pred             EEEecCCcCchhhHHHHHHHHHhhhhcCceeEeEE
Q 044964           75 VIFSKGYASSGWCLEELVKILECKDKYGQIVIPVF  109 (163)
Q Consensus        75 vvlS~~y~~S~wc~~El~~~~~~~~~~~~~iiPIf  109 (163)
                      +++...... .-...|+..|...    +..||-+-
T Consensus        87 A~ldg~~~D-~GTa~EiG~A~a~----gKPvi~~~  116 (167)
T d1s2da_          87 FLYDMDQLD-DGSAFEIGFMRAM----HKPVILVP  116 (167)
T ss_dssp             EEEESSSCC-HHHHHHHHHHHHT----TCCEEEEE
T ss_pred             EEeCCCCCC-ccHHHHHHHHHHC----CCeEEEEe
Confidence            999877654 4578899988754    34665543