Citrus Sinensis ID: 044967

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
MGICVSTASSEIHDQVDNGQENVIFVEGNIVSHGVKKLCSLYSKQGSKGLNQDAGILCQGYGTEDGEFCGVFDGHGKHGHVVSELVRNRLPSLILSQKNALSNSNVKANGEVMMPSIDFYKWQEACVKAFKVMDKEVKLQENLDCFCSGTTAVVVIRQGEDLVIANLGDSRAVLGTVSDNGELKAVQLTTDLKPSLPSEAERIKQCRGRVLALKEEPHIQRVWLPHEDTPGLAMSRAFGDFLLKNHGIIAIPDVSYRRLTSNDQFILLATDGVLDVLSSNQVATIVWEADNKQEAARKVVEAANAAWKKKFPSSKMDDCTVVCLFLQKR
ccccccccccccccccccccccEEEEcccEEEcccEEEEEEEEcccccccccccEEEcccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEccEEEEEEccccEEEEEEEcccccEEEEEcccccccccHHHHHHHHHcccEEEEccccccccEEEcccccccccHHHcccccccccccccEEccEEEEEEccccccEEEEEcccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEcc
cccccccccHHHHcHccccccccccccccEEEccccEEEEEEEccccccccccEEEEEcccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHcHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEEcccccccHHHHHHHHHcccEEEEcccccccEEEEcccccccHHHHHHHHccHHHHHccEEEcccEEEEEEccccEEEEEEccccEEEccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEccc
mgicvstasseihdqvdngqenvifVEGNIVSHGVKKLCSLYSkqgskglnqdagilcqgygtedgefcgvfdghgkhghVVSELVRNRLPSLILsqknalsnsnvkangevmmpsiDFYKWQEACVKAFKVMDKEVKLQenldcfcsgTTAVVVIRQGEDLVIANLgdsravlgtvsdngelKAVQLTtdlkpslpseAERIKQCRGRVlalkeephiqrvwlphedtpglamSRAFGDFLlknhgiiaipdvsyrrltsndQFILLATDGVLDVLSSNQVATIVWEADNKQEAARKVVEAANAAWkkkfpsskmddcTVVCLFLQKR
MGICVSTAsseihdqvdnGQENVIFVEGNIVSHGVKKLCSLYSKQGSKGLNQDAGILCQGYGTEDGEFCGVFDGHGKHGHVVSELVRNRLPSLILSQKNALSNSNVKANGEVMMPSIDFYKWQEACVKAFKVMDKEVKLQENLDCFCSGTTAVVVIRQGEDLVIANLGDSRAVLgtvsdngelkavqlttdlkpslpseaeRIKQCRGRVLAlkeephiqrvwlphEDTPGLAMSRAFGDFLLKNHGIIAIPDVSYRRLTSNDQFILLATDGVLDVLSSNQVATIVWEADNKQEAARKVVEAANAawkkkfpsskmddcTVVCLFLQKR
MGICVSTASSEIHDQVDNGQENVIFVEGNIVSHGVKKLCSLYSKQGSKGLNQDAGILCQGYGTEDGEFCGVFDGHGKHGHVVSELVRNRLPSLILSQKNALSNSNVKANGEVMMPSIDFYKWQEACVKAFKVMDKEVKLQENLDCFCSGTTAVVVIRQGEDLVIANLGDSRAVLGTVSDNGELKAVQLTTDLKPSLPSEAERIKQCRGRVLALKEEPHIQRVWLPHEDTPGLAMSRAFGDFLLKNHGIIAIPDVSYRRLTSNDQFILLATDGVLDVLSSNQVATIVWEADNKQeaarkvveaanaaWKKKFPSSKMDDCTVVCLFLQKR
*******************QENVIFVEGNIVSHGVKKLCSLYSKQGSKGLNQDAGILCQGYGTEDGEFCGVFDGHGKHGHVVSELVRNRLPSLILSQKNAL****VKANGEVMMPSIDFYKWQEACVKAFKVMDKEVKLQENLDCFCSGTTAVVVIRQGEDLVIANLGDSRAVLGTVSDNGELKAVQL**************IKQCRGRVLALKEEPHIQRVWLPHEDTPGLAMSRAFGDFLLKNHGIIAIPDVSYRRLTSNDQFILLATDGVLDVLSSNQVATIVWEADNKQEAARKVVEAANAAWKKKFPSSKMDDCTVVCLFL***
*********************************GVKKLCSLYSKQGSKGLNQDAGILCQGYGTEDGEFCGVFDGHGKHGHVVSELVRNRLPSLILSQKNALS***********MPSIDFYKWQEACVKAFKVMDKEVKLQENLDCFCSGTTAVVVIRQGEDLVIANLGDSRAVLGTVSDNGELKAVQLTTDLKPSLPSEAERIKQCRGRVLALKEEPHIQRVWLPHEDTPGLAMSRAFGDFLLKNHGIIAIPDVSYRRLTSNDQFILLATDGVLDVLSSNQVATIVWEADNKQEAARKVVEAANAAWKKKFPSSKMDDCTVVCLFLQKR
MGICVSTASSEIHDQVDNGQENVIFVEGNIVSHGVKKLCSLYSKQGSKGLNQDAGILCQGYGTEDGEFCGVFDGHGKHGHVVSELVRNRLPSLILSQKNALSNSNVKANGEVMMPSIDFYKWQEACVKAFKVMDKEVKLQENLDCFCSGTTAVVVIRQGEDLVIANLGDSRAVLGTVSDNGELKAVQLTTDLKPSLPSEAERIKQCRGRVLALKEEPHIQRVWLPHEDTPGLAMSRAFGDFLLKNHGIIAIPDVSYRRLTSNDQFILLATDGVLDVLSSNQVATIVWEADNKQEAARKVVEAANAAWKKKFPSSKMDDCTVVCLFLQKR
************************FVEGNIVSHGVKKLCSLYSKQGSKGLNQDAGILCQGYGTEDGEFCGVFDGHGKHGHVVSELVRNRLPSLILSQKNALS***********MPSIDFYKWQEACVKAFKVMDKEVKLQENLDCFCSGTTAVVVIRQGEDLVIANLGDSRAVLGTVSDNGELKAVQLTTDLKPSLPSEAERIKQCRGRVLALKEEPHIQRVWLPHEDTPGLAMSRAFGDFLLKNHGIIAIPDVSYRRLTSNDQFILLATDGVLDVLSSNQVATIVWEADNKQEAARKVVEAANAAWKKKFPSSKMDDCTVVCLFLQK*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGICVSTASSEIHDQVDNGQENVIFVEGNIVSHGVKKLCSLYSKQGSKGLNQDAGILCQGYGTEDGEFCGVFDGHGKHGHVVSELVRNRLPSLILSQKNALSNSNVKANGEVMMPSIDFYKWQEACVKAFKVMDKEVKLQENLDCFCSGTTAVVVIRQGEDLVIANLGDSRAVLGTVSDNGELKAVQLTTDLKPSLPSEAERIKQCRGRVLALKEEPHIQRVWLPHEDTPGLAMSRAFGDFLLKNHGIIAIPDVSYRRLTSNDQFILLATDGVLDVLSSNQVATIVWEADNKQEAARKVVEAANAAWKKKFPSSKMDDCTVVCLFLQKR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query329 2.2.26 [Sep-21-2011]
Q6Z8B9389 Probable protein phosphat yes no 0.984 0.832 0.497 1e-93
Q9XGZ9331 Probable protein phosphat yes no 0.954 0.948 0.538 5e-92
Q9FG61448 Probable protein phosphat no no 0.942 0.691 0.476 1e-88
Q8H4S6427 Probable protein phosphat no no 0.896 0.690 0.506 3e-87
Q9LR65462 Probable protein phosphat no no 0.924 0.658 0.490 5e-87
O82637326 Probable protein phosphat no no 0.945 0.953 0.513 7e-87
Q8RXZ4 504 Probable protein phosphat no no 0.933 0.609 0.464 7e-87
Q6ZKL8 531 Probable protein phosphat no no 0.933 0.578 0.487 7e-87
Q2R637432 Probable protein phosphat no no 0.996 0.759 0.469 4e-86
Q9SA22 491 Probable protein phosphat no no 0.917 0.615 0.484 3e-85
>sp|Q6Z8B9|P2C12_ORYSJ Probable protein phosphatase 2C 12 OS=Oryza sativa subsp. japonica GN=Os02g0224100 PE=2 SV=1 Back     alignment and function desciption
 Score =  343 bits (880), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 179/360 (49%), Positives = 232/360 (64%), Gaps = 36/360 (10%)

Query: 1   MGICVSTASSEIHDQVDNGQENVIFVEG-------NIVSHGVKKLCSLYSKQGSKGLNQD 53
           MGIC   ASSE  + V    E++++V+         + S G +K+ SL+S++G KG NQD
Sbjct: 1   MGIC---ASSEQLEHVHETDESIVYVKDEQGRGGRGVESGGARKVASLFSQRGKKGPNQD 57

Query: 54  AGILCQGYGTEDGEFCGVFDGHGKHGHVVSELVRNRLPSLILSQKNALSN---------- 103
           + ILCQG+G EDG FCGVFDGHG+ G  +S+LVR+ LP +ILS +NAL            
Sbjct: 58  SVILCQGFGMEDGVFCGVFDGHGRCGQFISKLVRDYLPFMILSHRNALLLADAAADDDDD 117

Query: 104 ----------------SNVKANGEVMMPSIDFYKWQEACVKAFKVMDKEVKLQENLDCFC 147
                            N          +    +W++AC  AF  MD E+KLQ NLDC  
Sbjct: 118 AAFSDDAAASSSADSSGNSSPQPSASASAQMLEEWRQACASAFAAMDGELKLQPNLDCAF 177

Query: 148 SGTTAVVVIRQGEDLVIANLGDSRAVLGTVSDNGELKAVQLTTDLKPSLPSEAERIKQCR 207
           SGTTAV  I+QG DL+IANLGDSRAVL T+SD G L+AVQLT D KPS+P EA RIK+  
Sbjct: 178 SGTTAVCAIKQGRDLIIANLGDSRAVLATMSDTGYLQAVQLTVDHKPSVPEEAARIKRSG 237

Query: 208 GRVLALKEEPHIQRVWLPHEDTPGLAMSRAFGDFLLKNHGIIAIPDVSYRRLTSNDQFIL 267
           GRV  LK+EP + RVWLP E++PGLAM+R+ GD  LK HG+I  P+V+ RR+T  D F++
Sbjct: 238 GRVFGLKDEPGVMRVWLPGENSPGLAMARSLGDMRLKRHGVIPAPEVTSRRVTGADLFMV 297

Query: 268 LATDGVLDVLSSNQVATIVWEADNKQEAARKVVEAANAAWKKKFPSSKMDDCTVVCLFLQ 327
           LATDGV DVLS+ +V +IV     KQ A++ VVEAA   W+ KFP+S++DDC+ VCLFL 
Sbjct: 298 LATDGVWDVLSNEEVVSIVCATPRKQHASKAVVEAAVQRWRAKFPTSRVDDCSAVCLFLH 357

Oryza sativa subsp. japonica (taxid: 39947)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6
>sp|Q9XGZ9|P2C72_ARATH Probable protein phosphatase 2C 72 OS=Arabidopsis thaliana GN=At5g26010 PE=2 SV=2 Back     alignment and function description
>sp|Q9FG61|P2C74_ARATH Probable protein phosphatase 2C 74 OS=Arabidopsis thaliana GN=At5g36250 PE=2 SV=1 Back     alignment and function description
>sp|Q8H4S6|P2C64_ORYSJ Probable protein phosphatase 2C 64 OS=Oryza sativa subsp. japonica GN=Os07g0566200 PE=2 SV=2 Back     alignment and function description
>sp|Q9LR65|P2C01_ARATH Probable protein phosphatase 2C 1 OS=Arabidopsis thaliana GN=PPC6-6 PE=1 SV=1 Back     alignment and function description
>sp|O82637|P2C61_ARATH Probable protein phosphatase 2C 61 OS=Arabidopsis thaliana GN=At4g32950 PE=3 SV=1 Back     alignment and function description
>sp|Q8RXZ4|P2C18_ARATH Probable protein phosphatase 2C 18 OS=Arabidopsis thaliana GN=At1g79630 PE=2 SV=1 Back     alignment and function description
>sp|Q6ZKL8|P2C66_ORYSJ Probable protein phosphatase 2C 66 OS=Oryza sativa subsp. japonica GN=Os08g0500300 PE=2 SV=1 Back     alignment and function description
>sp|Q2R637|P2C75_ORYSJ Probable protein phosphatase 2C 75 OS=Oryza sativa subsp. japonica GN=Os11g0417400 PE=2 SV=1 Back     alignment and function description
>sp|Q9SA22|P2C06_ARATH Probable protein phosphatase 2C 6 OS=Arabidopsis thaliana GN=At1g16220 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query329
225429446349 PREDICTED: probable protein phosphatase 0.993 0.936 0.705 1e-134
224088913337 predicted protein [Populus trichocarpa] 0.996 0.973 0.703 1e-130
296081611324 unnamed protein product [Vitis vinifera] 0.951 0.966 0.711 1e-129
224141589332 predicted protein [Populus trichocarpa] 0.987 0.978 0.667 1e-129
255550844345 protein phosphatase-2c, putative [Ricinu 0.993 0.947 0.695 1e-129
147822287 691 hypothetical protein VITISV_021774 [Viti 0.969 0.461 0.696 1e-126
356514577343 PREDICTED: probable protein phosphatase 0.987 0.947 0.630 1e-123
388509506353 unknown [Lotus japonicus] 0.996 0.929 0.665 1e-118
357437517344 hypothetical protein MTR_1g016620 [Medic 0.996 0.953 0.659 1e-114
356562203344 PREDICTED: probable protein phosphatase 0.978 0.936 0.619 1e-107
>gi|225429446|ref|XP_002276954.1| PREDICTED: probable protein phosphatase 2C 72-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 240/340 (70%), Positives = 288/340 (84%), Gaps = 13/340 (3%)

Query: 1   MGICVSTASSEIHDQVDNGQENVIFVEGNIVSHGVKKLCSLYSKQGSKGLNQDAGILCQG 60
           MGIC+ST SSEI D  D G EN++F E +  S G+++L SL+S+ GSKGLNQDA IL QG
Sbjct: 1   MGICISTVSSEIQDSGD-GHENMVFFEDSTASIGIQRLGSLHSQPGSKGLNQDAAILHQG 59

Query: 61  YGTEDGEFCGVFDGHGKHGHVVSELVRNRLPSLILSQKNALSNSNVKANGE--------- 111
           YG EDG FCGVFDGHGK+GH+VS++VRN LPSL+L+QKNAL  +N    GE         
Sbjct: 60  YGMEDGAFCGVFDGHGKNGHIVSKIVRNHLPSLLLNQKNALLKANTAMKGEDLHTQKERR 119

Query: 112 --VMMPSIDFYKWQEACVKAFKVMDKEVKLQENLDCFCSGTTAVVVIRQGEDLVIANLGD 169
             ++MP+  F KWQEACV AFKVMDKE+KLQE+LDC CSGTTAVV+++QG+DLVIANLGD
Sbjct: 120 DGMVMPNKIFRKWQEACVGAFKVMDKEIKLQEDLDCSCSGTTAVVIVKQGDDLVIANLGD 179

Query: 170 SRAVLGTVSDNGELKAVQLTTDLKPSLPSEAERIKQCRGRVLALKEEPHIQRVWLPHEDT 229
           SRAVLGT+++NG + AVQLTTDLKP LP EA+RI++C GRV++LKEEPHIQRVWLP+ED+
Sbjct: 180 SRAVLGTITENG-VTAVQLTTDLKPGLPMEADRIRKCNGRVISLKEEPHIQRVWLPNEDS 238

Query: 230 PGLAMSRAFGDFLLKNHGIIAIPDVSYRRLTSNDQFILLATDGVLDVLSSNQVATIVWEA 289
           PGLAMSRAFGDFLLKNHGIIAIPD+SYRRL SNDQF++LATDGV DVLS++QVA IVW A
Sbjct: 239 PGLAMSRAFGDFLLKNHGIIAIPDISYRRLASNDQFLVLATDGVWDVLSNSQVAGIVWSA 298

Query: 290 DNKQEAARKVVEAANAAWKKKFPSSKMDDCTVVCLFLQKR 329
           ++++EAA+ VV+AA AAWK KFPSSK+DDCTVVCLFLQKR
Sbjct: 299 ESEEEAAKAVVDAATAAWKHKFPSSKVDDCTVVCLFLQKR 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224088913|ref|XP_002308579.1| predicted protein [Populus trichocarpa] gi|118480987|gb|ABK92447.1| unknown [Populus trichocarpa] gi|222854555|gb|EEE92102.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296081611|emb|CBI20616.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224141589|ref|XP_002324150.1| predicted protein [Populus trichocarpa] gi|222865584|gb|EEF02715.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255550844|ref|XP_002516470.1| protein phosphatase-2c, putative [Ricinus communis] gi|223544290|gb|EEF45811.1| protein phosphatase-2c, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147822287|emb|CAN66210.1| hypothetical protein VITISV_021774 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356514577|ref|XP_003525982.1| PREDICTED: probable protein phosphatase 2C 74-like [Glycine max] Back     alignment and taxonomy information
>gi|388509506|gb|AFK42819.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|357437517|ref|XP_003589034.1| hypothetical protein MTR_1g016620 [Medicago truncatula] gi|357478921|ref|XP_003609746.1| hypothetical protein MTR_4g121770 [Medicago truncatula] gi|355478082|gb|AES59285.1| hypothetical protein MTR_1g016620 [Medicago truncatula] gi|355510801|gb|AES91943.1| hypothetical protein MTR_4g121770 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356562203|ref|XP_003549361.1| PREDICTED: probable protein phosphatase 2C 75-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query329
TAIR|locus:2180612331 AT5G26010 [Arabidopsis thalian 0.975 0.969 0.525 4.1e-88
TAIR|locus:2019868 504 AT1G79630 [Arabidopsis thalian 0.671 0.438 0.533 8.3e-81
TAIR|locus:2183612448 PP2C74 "AT5G36250" [Arabidopsi 0.674 0.495 0.519 1.2e-79
TAIR|locus:504955459468 PP2C52 "AT4G03415" [Arabidopsi 0.689 0.485 0.506 4.1e-79
TAIR|locus:2020863462 AT1G03590 [Arabidopsis thalian 0.996 0.709 0.462 4.2e-79
TAIR|locus:2032880 491 AT1G16220 [Arabidopsis thalian 0.656 0.439 0.525 2e-77
TAIR|locus:2123792326 AT4G32950 [Arabidopsis thalian 0.930 0.938 0.5 1e-75
TAIR|locus:2149775382 AT5G01700 [Arabidopsis thalian 0.993 0.856 0.450 4.3e-70
TAIR|locus:2078117358 AT3G05640 [Arabidopsis thalian 0.920 0.846 0.441 2.4e-67
TAIR|locus:2143325373 AT5G27930 [Arabidopsis thalian 0.984 0.868 0.410 3.6e-66
TAIR|locus:2180612 AT5G26010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 880 (314.8 bits), Expect = 4.1e-88, P = 4.1e-88
 Identities = 176/335 (52%), Positives = 238/335 (71%)

Query:     1 MGICVSTASS--EIHDQVDNGQENVI-FVE--GNIVSHGVKKLCSLYSKQGSKGLNQDAG 55
             MG C S  SS  EIH+  ++G  NV+ + E  G      V +L S+ S QG+K LNQD  
Sbjct:     1 MGHCFSLPSSQSEIHEDNEHGDGNVVCYGEEFGLDQDLPVHRLGSVCSIQGTKVLNQDHA 60

Query:    56 ILCQGYGTEDGEFCGVFDGHGKHGHVVSELVRNRLPSLILSQKNALSNSNVKANGEVMMP 115
             +L QGYGT D E CGVFDGHGK+GH+VS++VRNRLPS++L+ K  L+  +     E    
Sbjct:    61 VLYQGYGTRDTELCGVFDGHGKNGHMVSKMVRNRLPSVLLALKEELNQESNVCEEEAS-- 118

Query:   116 SIDFYKWQEACVKAFKVMDKEVKLQENLDCFCSGTTAVVVIRQGEDLVIANLGDSRAVLG 175
                  KW++AC  AF+++D+E+ LQ   +C  SG+T VV I QG+DLVIANLGDSRAVLG
Sbjct:   119 -----KWEKACFTAFRLIDRELNLQV-FNCSFSGSTGVVAITQGDDLVIANLGDSRAVLG 172

Query:   176 TVSDNGELKAVQLTTDLKPSLPSEAERIKQCRGRVLALKEEPHIQRVWLPHEDTPGLAMS 235
             T++++GE+KAVQLT+DL P +PSEAERI+ C+GRV A+K EP  QRVWLP+++ PGLAMS
Sbjct:   173 TMTEDGEIKAVQLTSDLTPDVPSEAERIRMCKGRVFAMKTEPSSQRVWLPNQNIPGLAMS 232

Query:   236 RAFGDFLLKNHGIIAIPDVSYRRLTSNDQFILLATDGVLDVLSSNQVATIVWEADNKQXX 295
             RAFGDF LK+HG+IA+P++S  R+TS DQF++LATDGV D+LS+++V +++W +  KQ  
Sbjct:   233 RAFGDFRLKDHGVIAVPEISQHRITSKDQFLVLATDGVWDMLSNDEVVSLIWSSGKKQAS 292

Query:   296 XXXXXXXXX-XXWKKKFPSSKMDDCTVVCLFLQKR 329
                         WKK+   +K+DD TV+CLFLQ +
Sbjct:   293 AAKMVAEAAEAAWKKRLKYTKVDDITVICLFLQNK 327
GO:0003824 "catalytic activity" evidence=IEA
GO:0004722 "protein serine/threonine phosphatase activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006826 "iron ion transport" evidence=RCA
GO:0010106 "cellular response to iron ion starvation" evidence=RCA
GO:0010167 "response to nitrate" evidence=RCA
GO:0015706 "nitrate transport" evidence=RCA
TAIR|locus:2019868 AT1G79630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183612 PP2C74 "AT5G36250" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955459 PP2C52 "AT4G03415" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020863 AT1G03590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032880 AT1G16220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2123792 AT4G32950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149775 AT5G01700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078117 AT3G05640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143325 AT5G27930 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6Z8B9P2C12_ORYSJ3, ., 1, ., 3, ., 1, 60.49720.98480.8329yesno
Q9XGZ9P2C72_ARATH3, ., 1, ., 3, ., 1, 60.53800.95440.9486yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.3.16LOW CONFIDENCE prediction!
3rd Layer3.1.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00032157001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (354 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query329
cd00143254 cd00143, PP2Cc, Serine/threonine phosphatases, fam 3e-73
smart00332252 smart00332, PP2Cc, Serine/threonine phosphatases, 9e-57
pfam00481252 pfam00481, PP2C, Protein phosphatase 2C 2e-38
COG0631262 COG0631, PTC1, Serine/threonine protein phosphatas 2e-29
PTZ00224 381 PTZ00224, PTZ00224, protein phosphatase 2C; Provis 9e-19
PLN03145365 PLN03145, PLN03145, Protein phosphatase 2c; Provis 8e-16
pfam13672211 pfam13672, PP2C_2, Protein phosphatase 2C 0.004
>gnl|CDD|238083 cd00143, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information 
 Score =  226 bits (578), Expect = 3e-73
 Identities = 102/293 (34%), Positives = 141/293 (48%), Gaps = 46/293 (15%)

Query: 39  CSLYSKQGSKGLNQDAGILCQGYGTEDGEFCGVFDGHGKHGHVVSELVRNRLPSLILSQK 98
             +  K G +  N+DA ++      EDG   GVFDGHG  GH   E     L   +L + 
Sbjct: 3   AGVSDKGGDRKTNEDAVVIKPNLNNEDGGLFGVFDGHG--GHAAGEFASKLLVEELLEEL 60

Query: 99  NALSNSNVKANGEVMMPSIDFYKWQEACVKAFKVMDKEV--KLQENLDCFCSGTTAVVVI 156
                 +                 +EA  KAF   D+E+  + Q+  D   SGTTAVV +
Sbjct: 61  EETLTLS-------------EEDIEEALRKAFLRADEEILEEAQDEPDDARSGTTAVVAL 107

Query: 157 RQGEDLVIANLGDSRAVLGTVSDNGELKAVQLTTDLKPSLPSEAERIKQCRGRVLALKEE 216
            +G  L +AN+GDSRAVL         +AVQLT D KP    E ERI++  GRV   +  
Sbjct: 108 IRGNKLYVANVGDSRAVLCRNG-----EAVQLTKDHKPVNEEERERIEKAGGRVSNGRVP 162

Query: 217 PHIQRVWLPHEDTPGLAMSRAFGDFLLKNHGIIAIPDVSYRRLTSNDQFILLATDGVLDV 276
                          LA++RA GDF LK  G+ A PDV+  +LT +D F++LA+DG+ DV
Sbjct: 163 G-------------VLAVTRALGDFDLK-PGVSAEPDVTVVKLTEDDDFLILASDGLWDV 208

Query: 277 LSSNQVATIVWEADNK---QEAARKVVEAANAAWKKKFPSSKMDDCTVVCLFL 326
           LS+ +   IV     K   QEAA+++V+ A             D+ TVV + L
Sbjct: 209 LSNQEAVDIVRSELAKEDLQEAAQELVDLALRRG-------SHDNITVVVVRL 254

Length = 254
>gnl|CDD|214625 smart00332, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information
>gnl|CDD|215938 pfam00481, PP2C, Protein phosphatase 2C Back     alignment and domain information
>gnl|CDD|223704 COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|240318 PTZ00224, PTZ00224, protein phosphatase 2C; Provisional Back     alignment and domain information
>gnl|CDD|215603 PLN03145, PLN03145, Protein phosphatase 2c; Provisional Back     alignment and domain information
>gnl|CDD|222308 pfam13672, PP2C_2, Protein phosphatase 2C Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 329
PLN03145365 Protein phosphatase 2c; Provisional 100.0
KOG0698330 consensus Serine/threonine protein phosphatase [Si 100.0
PTZ00224 381 protein phosphatase 2C; Provisional 100.0
KOG0697379 consensus Protein phosphatase 1B (formerly 2C) [Si 100.0
PF00481254 PP2C: Protein phosphatase 2C; InterPro: IPR001932 100.0
COG0631262 PTC1 Serine/threonine protein phosphatase [Signal 100.0
PRK14559645 putative protein serine/threonine phosphatase; Pro 100.0
cd00143254 PP2Cc Serine/threonine phosphatases, family 2C, ca 100.0
KOG0700390 consensus Protein phosphatase 2C/pyruvate dehydrog 100.0
smart00332255 PP2Cc Serine/threonine phosphatases, family 2C, ca 100.0
KOG0699542 consensus Serine/threonine protein phosphatase [Si 100.0
KOG1323493 consensus Serine/threonine phosphatase [Signal tra 99.95
KOG1379330 consensus Serine/threonine protein phosphatase [Si 99.94
PF13672212 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 99.88
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 99.83
smart00331193 PP2C_SIG Sigma factor PP2C-like phosphatases. 99.78
TIGR02865764 spore_II_E stage II sporulation protein E. Stage I 99.63
PF07228193 SpoIIE: Stage II sporulation protein E (SpoIIE); I 99.52
COG2208367 RsbU Serine phosphatase RsbU, regulator of sigma s 98.51
>PLN03145 Protein phosphatase 2c; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.6e-48  Score=359.51  Aligned_cols=245  Identities=27%  Similarity=0.429  Sum_probs=207.3

Q ss_pred             EEEEeecCCCCCCccceEeecccC---------CCCceEEEEeeCCCCCcHHHHHHHHHHhHHHHHHHHhhccccccccC
Q 044967           39 CSLYSKQGSKGLNQDAGILCQGYG---------TEDGEFCGVFDGHGKHGHVVSELVRNRLPSLILSQKNALSNSNVKAN  109 (329)
Q Consensus        39 ~~~~s~~G~r~~neD~~~~~~~~~---------~~~~~l~~V~DG~Gg~G~~as~~a~~~l~~~l~~~~~~~~~~~~~~~  109 (329)
                      ++.+|++|.|+.|||++++...+.         ..+..|||||||||  |..+++++++.|++.+.+...          
T Consensus        67 ~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhG--G~~age~as~~l~~~i~~~~~----------  134 (365)
T PLN03145         67 SGAWADIGSRSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHG--GKHAADFACYHLPRFIVEDED----------  134 (365)
T ss_pred             EEEEccccCCCCCCCceEecccccccccccccCCCCceEEEEEeCCC--CHHHHHHHHHHHHHHHHhhhc----------
Confidence            789999999999999998765432         12348999999999  999999999999998865321          


Q ss_pred             ccCCCCCcchHHHHHHHHHHHHHHHHHHHhccC-CCccCCCceEEEEEEeCCEEEEEEcCCceEEEEEEccCCceEEEEc
Q 044967          110 GEVMMPSIDFYKWQEACVKAFKVMDKEVKLQEN-LDCFCSGTTAVVVIRQGEDLVIANLGDSRAVLGTVSDNGELKAVQL  188 (329)
Q Consensus       110 ~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~-~~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g~l~~~~l  188 (329)
                              ....++++|.++|..+++.+..... .....+|||++++++.++++|++||||||+|+++.   |.+  ++|
T Consensus       135 --------~~~~~~~al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~---g~~--~~L  201 (365)
T PLN03145        135 --------FPREIEKVVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRR---GKA--IEM  201 (365)
T ss_pred             --------cchhHHHHHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcC---CeE--EEe
Confidence                    1245778899999999999875432 22346999999999999999999999999999998   855  999


Q ss_pred             CCCCCCCChhHHHHHHHhCCeEEecccCCccceeeecCCCCCceecccccCCCCCccC------CceeccceEEEEcCCC
Q 044967          189 TTDLKPSLPSEAERIKQCRGRVLALKEEPHIQRVWLPHEDTPGLAMSRAFGDFLLKNH------GIIAIPDVSYRRLTSN  262 (329)
Q Consensus       189 t~dh~~~~~~e~~ri~~~~g~i~~~~~~~~~~~~~~~~~~~~~l~~trslGd~~~k~~------~~~~~p~i~~~~l~~~  262 (329)
                      |.||+|..+.|+.||.+.||.+..             .+..+.+++||+|||+.+|..      +++++|++..+++.++
T Consensus       202 T~DH~~~~~~E~~RI~~~Gg~v~~-------------g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~  268 (365)
T PLN03145        202 SRDHKPMCSKERKRIEASGGYVYD-------------GYLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEE  268 (365)
T ss_pred             cCCCCCCCHHHHHHHHHcCCceec-------------ceECCccccccccccccccccccccCCCcceEEEEEEEECCCC
Confidence            999999999999999999998852             222455679999999887653      3789999999999999


Q ss_pred             CeEEEEEcCCCCCCCChHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhhCCCCCCCceEEEEEEeeC
Q 044967          263 DQFILLATDGVLDVLSSNQVATIVWE----ADNKQEAARKVVEAANAAWKKKFPSSKMDDCTVVCLFLQK  328 (329)
Q Consensus       263 d~flll~SDGl~d~l~~~ei~~iv~~----~~~~~~~a~~Lv~~A~~~~~~~~~~g~~DniTvivv~~~~  328 (329)
                      |.|||||||||||+|++++++++++.    ..+++++|+.|++.|+.+       ++.||||||||+|+.
T Consensus       269 D~fLILaSDGLwdvls~ee~v~~i~~~l~~~~~p~~aa~~Lv~~Al~r-------gs~DNITvIVV~l~~  331 (365)
T PLN03145        269 DEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPVMCSKELVDEALKR-------KSGDNLAVVVVCFQS  331 (365)
T ss_pred             CEEEEEeCCccccCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-------CCCCCEEEEEEEeec
Confidence            99999999999999999998777643    458999999999999999       999999999999985

>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PTZ00224 protein phosphatase 2C; Provisional Back     alignment and domain information
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms] Back     alignment and domain information
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PRK14559 putative protein serine/threonine phosphatase; Provisional Back     alignment and domain information
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases Back     alignment and domain information
>TIGR02865 spore_II_E stage II sporulation protein E Back     alignment and domain information
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query329
2i0o_A304 Crystal Structure Of Anopheles Gambiae SerTHR PHOSP 1e-17
3rt0_A340 Crystal Structure Of Pyl10-Hab1 Complex In The Abse 1e-17
3ujg_B350 Crystal Structure Of Snrk2.6 In Complex With Hab1 L 5e-17
3nmt_B341 Crystal Structure Of Pyrabactin Bound Abscisic Acid 5e-17
4ds8_B343 Complex Structure Of Abscisic Acid Receptor Pyl3-(+ 5e-17
3kb3_B321 Crystal Structure Of Abscisic Acid-Bound Pyl2 In Co 5e-17
3qn1_B337 Crystal Structure Of The Pyr1 Abscisic Acid Recepto 5e-17
4da1_A389 Crystal Structure Of Branched-Chain Alpha-Ketoacid 6e-16
2iq1_A274 Crystal Structure Of Human Ppm1k Length = 274 4e-15
3kdj_B316 Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Le 5e-15
3mq3_A467 Crystal Structure Of Native Bovine Pdp1c Length = 4 6e-15
3nmn_B319 Crystal Structure Of Pyrabactin-Bound Abscisic Acid 8e-15
3jrq_A326 Crystal Structure Of (+)-aba-bound Pyl1 In Complex 9e-15
2i44_A324 Crystal Structure Of Serine-Threonine Phosphatase 2 1e-14
2pnq_A467 Crystal Structure Of Pyruvate Dehydrogenase Phospha 2e-14
3nmv_B324 Crystal Structure Of Pyrabactin-Bound Abscisic Acid 3e-14
2p8e_A307 Crystal Structure Of The SerineTHREONINE PHOSPHATAS 2e-12
1a6q_A382 Crystal Structure Of The Protein SerineTHREONINE PH 2e-11
3fxj_A390 Crystal Structure Of Human Protein Phosphatase 1a ( 3e-11
2isn_A364 Crystal Structure Of A Phosphatase From A Pathogeni 7e-06
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE COMPLEXED With Zn2+ Length = 304 Back     alignment and structure 
Iteration: 1

 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 108/233 (46%), Gaps = 28/233 (12%)
Query: 68  FCGVFDGHGKHGHVVSELVRNRLPSLILSQKNALSNSNVKANGEVMMPSIDFYKWQEACV 127
           F  V+DGHG  G  V++     LP+ + + +        KA  E  +   D    QE  +
Sbjct: 53  FFAVYDGHG--GAEVAQYCSLHLPTFLKTVEAYGRKEFEKALKEAFL-GFDATLLQEKVI 109
Query: 128 KAFKVMDKEVKLQENLDCFCSGTTAVVVIRQGEDLVIANLGDSRAVLGTVSDNGELKAVQ 187
           +  KV+  +    +      SG TAVV +  G+DL +AN GDSR V   V  NG  KA++
Sbjct: 110 EELKVLSGDSAGSDAEPGKDSGCTAVVALLHGKDLYVANAGDSRCV---VCRNG--KALE 164
Query: 188 LTTDLKPSLPSEAERIKQCRGRVLALKEEPHIQRVWLPHEDTPGLAMSRAFGDFLLK--- 244
           ++ D KP    E +RI++  GRV             L      GL +SRA GD   K   
Sbjct: 165 MSFDHKPEDTVEYQRIEKAGGRVT------------LDGRVNGGLNLSRAIGDHGYKMNK 212
Query: 245 -----NHGIIAIPDVSYRRLTSNDQFILLATDGVLDVLSSNQVATIVWEADNK 292
                   I A+PD+    +   D+F++LA DG+ + ++S QV   V E  NK
Sbjct: 213 SLPAEEQMISALPDIEKITVGPEDEFMVLACDGIWNFMTSEQVVQFVQERINK 265
>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of Abscisic Acid (Aba) Length = 340 Back     alignment and structure
>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1 Length = 350 Back     alignment and structure
>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid Receptor Pyl2 Mutant A93f In Complex With Type 2c Protein Phosphatase Hab1 Length = 341 Back     alignment and structure
>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+ Length = 343 Back     alignment and structure
>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex With Hab1 Length = 321 Back     alignment and structure
>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In Complex With The Hab1 Type 2c Phosphatase Catalytic Domain Length = 337 Back     alignment and structure
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid Dehydrogenase Phosphatase With Mg (Ii) Ions At The Active Site Length = 389 Back     alignment and structure
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k Length = 274 Back     alignment and structure
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Length = 316 Back     alignment and structure
>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c Length = 467 Back     alignment and structure
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid Receptor Pyl1 In Complex With Type 2c Protein Phosphatase Abi1 Length = 319 Back     alignment and structure
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With Abi1 Length = 326 Back     alignment and structure
>pdb|2I44|A Chain A, Crystal Structure Of Serine-Threonine Phosphatase 2c From Toxoplasma Gondii Length = 324 Back     alignment and structure
>pdb|2PNQ|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1 (Pdp1) Length = 467 Back     alignment and structure
>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid Receptor Pyl2 Mutant A93f In Complex With Type 2c Protein Phosphatase Abi2 Length = 324 Back     alignment and structure
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE Domain Of Human Ppm1b Length = 307 Back     alignment and structure
>pdb|1A6Q|A Chain A, Crystal Structure Of The Protein SerineTHREONINE PHOSPHATASE 2C AT 2 A Resolution Length = 382 Back     alignment and structure
>pdb|3FXJ|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a) Bound With Phosphate At 3 Mm Of Mn2+ Length = 390 Back     alignment and structure
>pdb|2ISN|A Chain A, Crystal Structure Of A Phosphatase From A Pathogenic Strain Toxoplasma Gondii Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query329
2i44_A324 Serine-threonine phosphatase 2C; PSI-2, 8817Z, str 5e-98
2iq1_A274 Protein phosphatase 2C kappa, PPM1K; structural ge 1e-57
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 6e-57
2irm_A358 Mitogen-activated protein kinase kinase kinase 7 i 3e-55
3kdj_B316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 7e-55
2p8e_A307 PPM1B beta isoform variant 6; structural genomics, 2e-54
1a6q_A382 Phosphatase 2C; catalytic mechanism, metalloenzyme 5e-52
2i0o_A304 Ser/Thr phosphatase; beta sandwich, structural gen 3e-51
2pnq_A467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 2e-50
3qn1_B337 Protein phosphatase 2C 16; start domain, BET V dom 6e-49
2j4o_A401 Mitogen-activated protein kinase kinase kinase 7-i 2e-47
3d8k_A377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 2e-39
2isn_A364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 1e-36
2pk0_A250 Serine/threonine protein phosphatase STP1; SI moti 8e-14
2jfr_A234 Ser-Thr phosphatase MSPP; hydrolase, PPM phosphata 1e-13
1txo_A237 Putative bacterial enzyme; serine/threonine protei 2e-12
2j82_A240 TPPHA, protein serine-threonine phosphatase; PP2C 7e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
3rnr_A211 Stage II sporulation E family protein; structural 8e-06
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Length = 324 Back     alignment and structure
 Score =  291 bits (747), Expect = 5e-98
 Identities = 82/305 (26%), Positives = 136/305 (44%), Gaps = 19/305 (6%)

Query: 39  CSLYSKQGSKGLNQDAGILCQGY--GTEDGEFCGVFDGHGKHGHVVSELVRNRLPSLILS 96
            ++++  G +   +D   LC     G +D  F GVFDG    G   SE V++ +   ++S
Sbjct: 24  AAIFTDIGGRKHQEDRFTLCPQLVPGRDDCAFFGVFDGTV--GDFASENVKDLVVPQLIS 81

Query: 97  QKNALSNSNVKAN--GEVMMPSIDFYKWQEACVKAFKVMDKEV-KLQENLDCFCSGTTAV 153
                  + +  +      +         +A    +K  D E+ K+ E L+   + +T+V
Sbjct: 82  SPAWQEVTEMLRSDVPATEVDEKLPQLLDQAVDDMYKNADNELVKMCEQLNKDYASSTSV 141

Query: 154 VVIRQGEDLVIANLGDSRAVLGTVSDNGELKAVQLTTDLKPSLPSEAERIKQCRGRVLAL 213
             +     + + +LGDSR  +G  + NG L    LT D KP +P E  RI +  G V  L
Sbjct: 142 TAVLAKGFVAVGHLGDSRIAMGVETPNG-LNCEFLTVDHKPDMPHEKLRIMRNGGSVEYL 200

Query: 214 KEEPHIQRVWL--------PHEDTPGLAMSRAFGDFLLKNHGIIAIPDVSYRRLTSNDQF 265
               +   +            E    L  SRAFG   LK +G+   PDV   R+T   + 
Sbjct: 201 HNHNNKPFIRGGDFSFRKSRGEQPMQLQYSRAFGGKDLKMYGLSNQPDVRVVRVTPQHRV 260

Query: 266 ILLATDGVLDVLSSNQVATIVWEA-DNKQEAARKVVEAANAAWKKKFPSSKMDDCTVVCL 324
           ++LATDG+ DV+S+ Q   I  +A    +  A+ +VE   A  + +  S+  D+ T + +
Sbjct: 261 MILATDGLWDVMSAAQAVEIAMQARQEGRNPAQALVEMTLAEQQSRNQSA--DNITAMTV 318

Query: 325 FLQKR 329
           F +K 
Sbjct: 319 FFKKT 323
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Length = 274 Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Length = 389 Back     alignment and structure
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae} Length = 358 Back     alignment and structure
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Length = 316 Back     alignment and structure
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Length = 307 Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Length = 382 Back     alignment and structure
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Length = 304 Back     alignment and structure
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Length = 467 Back     alignment and structure
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3ujg_B 3nmt_B* 3rt0_A 3kb3_B* Length = 337 Back     alignment and structure
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Length = 401 Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Length = 377 Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Length = 364 Back     alignment and structure
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae} Length = 250 Back     alignment and structure
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A Length = 234 Back     alignment and structure
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A Length = 237 Back     alignment and structure
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A Length = 240 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3rnr_A Stage II sporulation E family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans} Length = 211 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query329
2i0o_A304 Ser/Thr phosphatase; beta sandwich, structural gen 100.0
2p8e_A307 PPM1B beta isoform variant 6; structural genomics, 100.0
2iq1_A274 Protein phosphatase 2C kappa, PPM1K; structural ge 100.0
3qn1_B337 Protein phosphatase 2C 16; start domain, BET V dom 100.0
1a6q_A382 Phosphatase 2C; catalytic mechanism, metalloenzyme 100.0
3kdj_B316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 100.0
2irm_A358 Mitogen-activated protein kinase kinase kinase 7 i 100.0
2i44_A324 Serine-threonine phosphatase 2C; PSI-2, 8817Z, str 100.0
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 100.0
2isn_A364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 100.0
2j4o_A401 Mitogen-activated protein kinase kinase kinase 7-i 100.0
2pnq_A467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 100.0
3d8k_A377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 100.0
2pk0_A250 Serine/threonine protein phosphatase STP1; SI moti 100.0
1txo_A237 Putative bacterial enzyme; serine/threonine protei 100.0
2j82_A240 TPPHA, protein serine-threonine phosphatase; PP2C 100.0
2jfr_A234 Ser-Thr phosphatase MSPP; hydrolase, PPM phosphata 100.0
3rnr_A211 Stage II sporulation E family protein; structural 100.0
3t91_A242 Stage II sporulation protein E; SPOIIE, phosphatas 99.87
3pu9_A242 Protein serine/threonine phosphatase; PSI-biology, 99.85
3zt9_A193 Serine phosphatase; hydrolase, signal transduction 99.75
3f79_A255 Probable two-component response regulator; adaptor 99.72
3ke6_A 399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 99.34
3eq2_A394 Probable two-component response regulator; adaptor 98.49
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Back     alignment and structure
Probab=100.00  E-value=1.1e-49  Score=362.49  Aligned_cols=274  Identities=27%  Similarity=0.371  Sum_probs=215.9

Q ss_pred             CCcccCCCCCccccccccCCcccccccceEeeCCccceEEEEeecCCCCCCccceEeecccCCCCceEEEEeeCCCCCcH
Q 044967            1 MGICVSTASSEIHDQVDNGQENVIFVEGNIVSHGVKKLCSLYSKQGSKGLNQDAGILCQGYGTEDGEFCGVFDGHGKHGH   80 (329)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~G~r~~neD~~~~~~~~~~~~~~l~~V~DG~Gg~G~   80 (329)
                      ||..|+.|..+.++.+..               +....++++|++|+|..|||++++...+. ++..+|+||||||  |.
T Consensus         2 mg~~l~~p~~~~~~~~~~---------------~~~~~~~~~s~~G~R~~nED~~~~~~~~~-~~~~l~~V~DGhG--G~   63 (304)
T 2i0o_A            2 LGAYLSEPLTTKDSSDES---------------NEFLASGSSSMQGWRISQEDAHNCILNFD-DQCSFFAVYDGHG--GA   63 (304)
T ss_dssp             CGGGTTCCCEEEEEEEEE---------------CSSEEEEEEEEEESSSCCCEEEEEEEEEE-TTEEEEEEEECSS--CS
T ss_pred             cccccCCCcccccccccC---------------CCceEEEEeecCCCCCCccCEEEEEeccC-CCeEEEEEEcCCC--CH
Confidence            898888877553332211               23445889999999999999998865432 4568999999999  88


Q ss_pred             HHHHHHHHHhHHHHHHHHhhccccccccCccCCCCCcchHHHHHHHHHHHHHHHHHHHhcc----------------CCC
Q 044967           81 VVSELVRNRLPSLILSQKNALSNSNVKANGEVMMPSIDFYKWQEACVKAFKVMDKEVKLQE----------------NLD  144 (329)
Q Consensus        81 ~as~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~----------------~~~  144 (329)
                      .+++++++.+.+.+.+....                 ....+.++|.++|..+|+.+....                ...
T Consensus        64 ~~a~~as~~~~~~l~~~~~~-----------------~~~~~~~~l~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  126 (304)
T 2i0o_A           64 EVAQYCSLHLPTFLKTVEAY-----------------GRKEFEKALKEAFLGFDATLLQEKVIEELKVLSGDSAGSDAEP  126 (304)
T ss_dssp             HHHHHHHHHHHHHHHHSHHH-----------------HTTCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHCC-----CCT
T ss_pred             HHHHHHHHHHHHHHHhhhhc-----------------ccccHHHHHHHHHHHHHHHHHhhhhHHHHhhhccccccccccC
Confidence            89999999998888765321                 113467889999999999876421                122


Q ss_pred             ccCCCceEEEEEEeCCEEEEEEcCCceEEEEEEccCCceEEEEcCCCCCCCChhHHHHHHHhCCeEEecccCCccceeee
Q 044967          145 CFCSGTTAVVVIRQGEDLVIANLGDSRAVLGTVSDNGELKAVQLTTDLKPSLPSEAERIKQCRGRVLALKEEPHIQRVWL  224 (329)
Q Consensus       145 ~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g~l~~~~lt~dh~~~~~~e~~ri~~~~g~i~~~~~~~~~~~~~~  224 (329)
                      ...+|||++++++.++++|++||||||+|++|.   |++  ++||.||+|..+.|+.||...+|.+..            
T Consensus       127 ~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~---g~~--~~LT~DH~~~~~~e~~rI~~~gg~v~~------------  189 (304)
T 2i0o_A          127 GKDSGCTAVVALLHGKDLYVANAGDSRCVVCRN---GKA--LEMSFDHKPEDTVEYQRIEKAGGRVTL------------  189 (304)
T ss_dssp             TTSCEEEEEEEEEETTEEEEEEESSCEEEEEET---TEE--EECCCCCCTTSHHHHHHHHHTTCCBCT------------
T ss_pred             CCCCCccEEEEEEECCEEEEEEccCcEEEEEEC---CEE--EEcCCCcCCcCHHHHHHHHhCCCEEEe------------
Confidence            567999999999999999999999999999998   855  999999999999999999999998852            


Q ss_pred             cCCCCCceecccccCCCCCccC--------CceeccceEEEEcCCCCeEEEEEcCCCCCCCChHHHHHHHHh-----cCC
Q 044967          225 PHEDTPGLAMSRAFGDFLLKNH--------GIIAIPDVSYRRLTSNDQFILLATDGVLDVLSSNQVATIVWE-----ADN  291 (329)
Q Consensus       225 ~~~~~~~l~~trslGd~~~k~~--------~~~~~p~i~~~~l~~~d~flll~SDGl~d~l~~~ei~~iv~~-----~~~  291 (329)
                      +.+..+.+.+||+||+..+|..        .+.++|++..+++.++|.|||||||||||+++++++.+++..     ..+
T Consensus       190 ~~rv~g~l~ltRalGd~~~k~~~~l~~~~~~v~~~pdi~~~~l~~~D~fllL~SDGl~d~l~~~ei~~~v~~~~~~~~~~  269 (304)
T 2i0o_A          190 DGRVNGGLNLSRAIGDHGYKMNKSLPAEEQMISALPDIEKITVGPEDEFMVLACDGIWNFMTSEQVVQFVQERINKPGMK  269 (304)
T ss_dssp             TSCBTTSCSCSBCEECGGGCCCTTSCGGGSSSBCCCEEEEEECCTTEEEEEEECHHHHTTCCHHHHHHHHHHHHTSTTCC
T ss_pred             CCeEcCceeccccccCHHHccCccCCccCCeEEeeCeEEEEEcCCCCeEEEEECcCccccCCHHHHHHHHHHHHhhcCCC
Confidence            1222455679999999887752        358899999999999999999999999999999999999986     468


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCCCceEEEEEEee
Q 044967          292 KQEAARKVVEAANAAWKKKFPSSKMDDCTVVCLFLQ  327 (329)
Q Consensus       292 ~~~~a~~Lv~~A~~~~~~~~~~g~~DniTvivv~~~  327 (329)
                      ++.+|+.|++.|+.+|... .+++.||||||||+|+
T Consensus       270 ~~~~a~~L~~~a~~~~~~g-~~g~~DNiTvivv~~~  304 (304)
T 2i0o_A          270 LSKICEELFDHCLAPHTRG-DGTGCDNMTAIIVQFK  304 (304)
T ss_dssp             HHHHHHHHHHHHC-------------CEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHhhhcc-CCCCCCCeEEEEEEeC
Confidence            9999999999999865321 0268999999999985
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Back     alignment and structure
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Back     alignment and structure
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3zvu_B* 3ujg_B 3nmt_B* 4ds8_B* 3rt0_A 3kb3_B* Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Back     alignment and structure
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Back     alignment and structure
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae} Back     alignment and structure
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Back     alignment and structure
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Back     alignment and structure
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Back     alignment and structure
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae} Back     alignment and structure
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A Back     alignment and structure
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A Back     alignment and structure
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A Back     alignment and structure
>3rnr_A Stage II sporulation E family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans} Back     alignment and structure
>3t91_A Stage II sporulation protein E; SPOIIE, phosphatase, manganese binding, PP2C PH domain; HET: GL0 MAN; 2.64A {Bacillus subtilis} PDB: 3t9q_A* Back     alignment and structure
>3pu9_A Protein serine/threonine phosphatase; PSI-biology, MCSG, structural genomics; HET: MSE; 1.55A {Sphaerobacter thermophilus} Back     alignment and structure
>3zt9_A Serine phosphatase; hydrolase, signal transduction, protein protein interaction,; HET: PEG; 1.75A {Moorella thermoacetica} Back     alignment and structure
>3f79_A Probable two-component response regulator; adaptor, signaling protein; 2.80A {Pseudomonas aeruginosa} PDB: 3es2_A Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 329
d1a6qa2295 d.219.1.1 (A:2-296) Protein serine/threonine phosp 2e-32
d1txoa_235 d.219.1.1 (A:) putative serine/threonine phosphata 2e-11
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 295 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: Protein serine/threonine phosphatase 2C, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (300), Expect = 2e-32
 Identities = 72/318 (22%), Positives = 120/318 (37%), Gaps = 60/318 (18%)

Query: 27  EGNIVSHGVKKLCSLYSKQGSKGLNQDAG--ILCQGYGTEDGEFCGVFDGHGKHGHVVSE 84
           +GN + +G+       S QG +   +DA   ++    G E   F  V+DGH   G  V++
Sbjct: 17  QGNGLRYGL------SSMQGWRVEMEDAHTAVIGLPSGLESWSFFAVYDGHA--GSQVAK 68

Query: 85  LVRNRLPSLILSQKNALSNSNVKANGEVMMPSIDFYKWQEACVKAFKVMDKE--VKLQEN 142
                L   I + ++   ++                  +      F  +D+   V  ++ 
Sbjct: 69  YCCEHLLDHITNNQDFKGSAGAP----------SVENVKNGIRTGFLEIDEHMRVMSEKK 118

Query: 143 LDCFCSGTTAVVVIRQGEDLVIANLGDSRAVLGTVSDNGELKAVQLTTDLKPSLPSEAER 202
                SG+TAV V+   +     N GDSR +L              T D KPS P E ER
Sbjct: 119 HGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKV-----HFFTQDHKPSNPLEKER 173

Query: 203 IKQCRGRVLALKEEPHIQRVWLPHEDTPGLAMSRAFGDFLLKNHG--------IIAIPDV 254
           I+   G               +       LA+SRA GDF  K           +   P+V
Sbjct: 174 IQNAGGS-------------VMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEV 220

Query: 255 SYRRLT-SNDQFILLATDGVLDVLSSNQVATIVWEA----DNKQEAARKVVEAANAAWKK 309
                +  +DQFI+LA DG+ DV+ + ++   V       D+ ++   +VV+       +
Sbjct: 221 HDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSR 280

Query: 310 KFPSSKMDDCTVVCLFLQ 327
                  D+ +V+ +   
Sbjct: 281 -------DNMSVILICFP 291
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Length = 235 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query329
d1a6qa2295 Protein serine/threonine phosphatase 2C, catalytic 100.0
d1txoa_235 putative serine/threonine phosphatase pstp/ppp {My 100.0
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: Protein serine/threonine phosphatase 2C, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-51  Score=367.32  Aligned_cols=255  Identities=27%  Similarity=0.371  Sum_probs=218.2

Q ss_pred             ceEEEEeecCCCCCCccceEeecccCC--CCceEEEEeeCCCCCcHHHHHHHHHHhHHHHHHHHhhccccccccCccCCC
Q 044967           37 KLCSLYSKQGSKGLNQDAGILCQGYGT--EDGEFCGVFDGHGKHGHVVSELVRNRLPSLILSQKNALSNSNVKANGEVMM  114 (329)
Q Consensus        37 ~~~~~~s~~G~r~~neD~~~~~~~~~~--~~~~l~~V~DG~Gg~G~~as~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~  114 (329)
                      -.+|++|.+|+|++|||++.+...+..  ++..|||||||||  |..+|+++++.|++.|.+.+......          
T Consensus        21 ~~~g~~s~~G~R~~~ED~~~~~~~~~~~~~~~~lf~V~DGhG--G~~~s~~~~~~l~~~l~~~~~~~~~~----------   88 (295)
T d1a6qa2          21 LRYGLSSMQGWRVEMEDAHTAVIGLPSGLESWSFFAVYDGHA--GSQVAKYCCEHLLDHITNNQDFKGSA----------   88 (295)
T ss_dssp             EEEEEEEEEETSSSCCEEEEEEEEETTTEEEEEEEEEEEEES--CSHHHHHHHHHHHHHHHTSHHHHCSS----------
T ss_pred             eEEEEEeCccCCCcccCeeEEEcccCCCCCceEEEEEEeCCC--ChHHHHHHHHHHHHHHHHhhhhcccc----------
Confidence            358999999999999999988766542  3448999999999  99999999999999998765543111          


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHh--ccCCCccCCCceEEEEEEeCCEEEEEEcCCceEEEEEEccCCceEEEEcCCCC
Q 044967          115 PSIDFYKWQEACVKAFKVMDKEVKL--QENLDCFCSGTTAVVVIRQGEDLVIANLGDSRAVLGTVSDNGELKAVQLTTDL  192 (329)
Q Consensus       115 ~~~~~~~~~~~l~~~~~~~~~~i~~--~~~~~~~~~GtT~~~~~i~~~~l~~anvGDSr~~l~~~~~~g~l~~~~lt~dh  192 (329)
                      .....+.+.++|.++|.++++.+..  ........+|||++++++.++++|++||||||+|++++   |.+  ++||.||
T Consensus        89 ~~~~~~~~~~al~~a~~~~~~~~~~~~~~~~~~~~~GtTa~~~~i~~~~l~vanvGDSR~~l~~~---~~~--~~lT~dH  163 (295)
T d1a6qa2          89 GAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRN---RKV--HFFTQDH  163 (295)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCEECEEEEEECSSEEEEEEESSCEEEEEET---TEE--EEECCCC
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCeEEEEEeeCCEEEEEecCCCeEEEeec---ccc--eeecccc
Confidence            1244568899999999999998863  23345567999999999999999999999999999998   844  9999999


Q ss_pred             CCCChhHHHHHHHhCCeEEecccCCccceeeecCCCCCceecccccCCCCCccCC--------ceeccceEEEEcC-CCC
Q 044967          193 KPSLPSEAERIKQCRGRVLALKEEPHIQRVWLPHEDTPGLAMSRAFGDFLLKNHG--------IIAIPDVSYRRLT-SND  263 (329)
Q Consensus       193 ~~~~~~e~~ri~~~~g~i~~~~~~~~~~~~~~~~~~~~~l~~trslGd~~~k~~~--------~~~~p~i~~~~l~-~~d  263 (329)
                      +|..+.|+.||...||.+.             ..+..+.+++||+|||+.+|..+        ++++|++..+.+. +++
T Consensus       164 ~~~~~~E~~Ri~~~gg~v~-------------~~r~~g~l~~tRa~Gd~~~k~~~~~~~~~~~v~~~Pdi~~~~~~~~~~  230 (295)
T d1a6qa2         164 KPSNPLEKERIQNAGGSVM-------------IQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDD  230 (295)
T ss_dssp             CTTSHHHHHHHHHTTCCEE-------------TTEETTTBSCSBCEECGGGSCCTTCCGGGSSSBCCCEEEEEECCTTTE
T ss_pred             CcccHHHHhhHhhcCCccc-------------ccccCCceeeeeccCcHHhhhccccCcccccccccccceEEEeecccc
Confidence            9999999999999999986             23345678899999999988654        8899999999986 557


Q ss_pred             eEEEEEcCCCCCCCChHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhhCCCCCCCceEEEEEEeeC
Q 044967          264 QFILLATDGVLDVLSSNQVATIVWEA----DNKQEAARKVVEAANAAWKKKFPSSKMDDCTVVCLFLQK  328 (329)
Q Consensus       264 ~flll~SDGl~d~l~~~ei~~iv~~~----~~~~~~a~~Lv~~A~~~~~~~~~~g~~DniTvivv~~~~  328 (329)
                      .|||||||||||+|+++||+++++..    .+++.+|+.|++.|+.+       ++.||||||||+|++
T Consensus       231 ~flvL~SDGl~d~l~~~ei~~~v~~~~~~~~~~~~~a~~Lv~~A~~~-------gs~DNiTvivv~~~~  292 (295)
T d1a6qa2         231 QFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYK-------GSRDNMSVILICFPN  292 (295)
T ss_dssp             EEEEEECHHHHTTSCHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT-------TCCSCEEEEEEECTT
T ss_pred             eeEeeecCcccccCCHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhc-------CCCCCeEEEEEeccC
Confidence            79999999999999999999998753    58999999999999999       999999999999975
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure