Citrus Sinensis ID: 044980

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
Protein Sequence
TMVNISFCYGKSYVGCKESERGALLKLKRNLKDLSNCLASWNIGDGDCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTKKK
Secondary Structure (PSIPRED)
cEEEEEEccccccccccHHHHHHHHHHHHccccccccccccccccccccccccEEEccccccEEEEEcccccccccEEEcccccccEEccccccccccccEEEcccccccEEEcccHHccccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccEEcccHHHccccccccEEEEEcccccccccHHHHcccccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEHHcccccccHHHHHHHHHHHHccccccccccccccccccccEEEEEEccccccEccEcccccccccEEEEcccccccccccHHHcccccccEEEEccccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEEccccccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccc
Coil and Loop (DISEMBL)
tmvnisfcygksyvgckeseRGALLKLKRNLKDLSNClaswnigdgdcckwVGNFCNNLTGHILElnlenpfgylkysdaedddhyMRSKLVvgnlsnlqyldlswidcrlhVDSLSWLSSLLLLEHIDlgqvhlgkasdcwIYSLRHLFFIVLSYNqfqgkipstlgnltslkqidlshnqfnftspgwlSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKltsidfssvklsQDISQVLDIFSAYGTYALVSLILSHCQISAALgklsslrnldfslnmlngsiplslgqishleyldlsnnkfvtkkk
Flexible Loop (DISEMBL)
tmvnisfcygksyvgckesERGALLKLKRNLKDLSNCLASWNIGDGDCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHleyldlsnnkfvtkkk
Low Complexity Region (SEG)
TMVNISFCYGKSYVGCKESERGALLKLKRNLKDLSNCLASWNIGDGDCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDslswlssllllEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTKKK
Disordered region (IsUnstruct)
**VNISFCYGKSYVGCKESERGALLKLKRNLKDLSNCLASWNIGDGDCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSN********
Disordered Region (DISOPRED)
TMVNIS*CYGKSY**CKESERGALLKLKRNLKDLSNCLASWNIGDGDCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTKKK
Disordered Region (DISEMBL)
TMVNISFCYGKSYVGCKESERGALLKLKRNLKDLSNCLASWNIGDGDCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTKKK
Disordered Region (DISPRO)
TMVNISFCYGKSYVGCKESERGALLKLKRNLKDLSNCLASWNIGDGDCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
TMVNISFCYGKSYVGCKESERGALLKLKRNLKDLSNCLASWNIGDGDCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTKKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	313	2.2.26 [Sep-21-2011]
C0LGT6	1031	LRR receptor-like serine/	no	no	0.884	0.268	0.281	2e-18
Q9C9H7	847	Receptor-like protein 12	no	no	0.779	0.288	0.283	8e-18
Q42371	976	LRR receptor-like serine/	no	no	0.913	0.293	0.294	5e-15
Q6XAT2	967	LRR receptor-like serine/	no	no	0.942	0.305	0.273	6e-14
O82318	960	Probably inactive leucine	no	no	0.677	0.220	0.305	2e-13
C0LGW6	966	LRR receptor-like serine/	no	no	0.910	0.295	0.265	5e-13
Q9S7I6	1151	LRR receptor-like serine/	no	no	0.881	0.239	0.275	6e-13
Q9FL51	872	Probably inactive leucine	no	no	0.881	0.316	0.293	9e-13
Q9M0G7	1013	Leucine-rich repeat recep	no	no	0.891	0.275	0.266	6e-12
Q05091	330	Polygalacturonase inhibit	N/A	no	0.843	0.8	0.278	1e-11

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 135/302 (44%), Gaps = 25/302 (8%)

Query: 18  ESERGALLKLKRNLKD--LSNCLASWNIGDGDCCKWVGNFCNNLTGHILELNLE------ 69
           E++  ALL+ K  + +      LASWN      C W+G  C      ++ LNL       
Sbjct: 29  ETDMQALLEFKSQVSENNKREVLASWN-HSSPFCNWIGVTCGRRRERVISLNLGGFKLTG 87

Query: 70  --NP----FGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSW--IDCRLHVDSLSWLSS 121
             +P      +L+  +  D+         VG L  LQYL++S+  ++ R+     S LS+
Sbjct: 88  VISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIP----SSLSN 143

Query: 122 LLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHN 181
              L  +DL   HLG      + SL  L  + LS N   G  P++LGNLTSL+++D ++N
Sbjct: 144 CSRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYN 203

Query: 182 QFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQ 241
           Q     P  +++L ++  F + L S    F    P +   +  L S+  +    S ++  
Sbjct: 204 QMRGEIPDEVARLTQMVFFQIALNS----FSGGFPPALYNISSLESLSLADNSFSGNLRA 259

Query: 242 VLDIFSAYGTYALVSLILSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYL 301
                       L+        I   L  +SSL   D S N L+GSIPLS G++ +L +L
Sbjct: 260 DFGYLLPNLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWWL 319

Query: 302 DL 303
            +
Sbjct: 320 GI 321

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 91.3 bits (225), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 137/310 (44%), Gaps = 66/310 (21%)

Query: 16  CKESERGALLKLKRNLKDLSNCLASWNIGD---------GDCCKWVGNFCNNLTGHILEL 66
           C++ +R ALL+ +          ASW+I +          DCC W G  CN+ +G ++ L
Sbjct: 34  CRDDQRDALLEFRGEFP----INASWHIMNQWRGPWNKSTDCCLWNGVTCNDKSGQVISL 89

Query: 67  NLENPF--GYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLL 124
           ++ N F   YLK + +               L  LQYL                      
Sbjct: 90  DIPNTFLNNYLKTNSS---------------LFKLQYL---------------------- 112

Query: 125 LEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFN 184
             H+DL   +L       + +L HL  + L +N+F G+IP+++GNL  L+ + L++N   
Sbjct: 113 -RHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLT 171

Query: 185 FTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLD 244
              P  L  L    S L+NL     R    IP S   L +L ++  +S  L  +I   L 
Sbjct: 172 GEIPSSLGNL----SRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIGEIPSSLG 227

Query: 245 IFSAYGTYALVSLILSHCQ----ISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEY 300
             S      LV L+L+H Q    + A++G L  LR + F  N L+G+IP+S   ++ L  
Sbjct: 228 NLS-----NLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIPISFANLTKLSI 282

Query: 301 LDLSNNKFVT 310
             LS+N F +
Sbjct: 283 FVLSSNNFTS 292

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score = 82.0 bits (201), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 151/336 (44%), Gaps = 50/336 (14%)

Query: 2   MVNISFCYGKSYVGCKESERGA-LLKLKRNLKDLSNCLASWNIGDG-DCCKWVGNFCNNL 59
           +V + F +  S V    SE GA LL++K++ KD++N L  W      D C W G  C N+
Sbjct: 7   IVLLGFLFCLSLVATVTSEEGATLLEIKKSFKDVNNVLYDWTTSPSSDYCVWRGVSCENV 66

Query: 60  TGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWL 119
           T +++ LNL         SD   D     +   +G+L +L  +DL     RL       +
Sbjct: 67  TFNVVALNL---------SDLNLDGEISPA---IGDLKSLLSIDLRG--NRLSGQIPDEI 112

Query: 120 SSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLS 179
                L+++DL    L       I  L+ L  ++L  NQ  G IPSTL  + +LK +DL+
Sbjct: 113 GDCSSLQNLDLSFNELSGDIPFSISKLKQLEQLILKNNQLIGPIPSTLSQIPNLKILDLA 172

Query: 180 HNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSI---DFSSVKLS 236
            N+ +   P  L   NE+  +L       +R + L+      LC+LT +   D  +  L+
Sbjct: 173 QNKLSGEIP-RLIYWNEVLQYL------GLRGNNLVGNISPDLCQLTGLWYFDVRNNSLT 225

Query: 237 QDIS---------QVLDI--------------FSAYGTYALVSLILSHCQISAALGKLSS 273
             I          QVLD+              F    T +L    LS  +I + +G + +
Sbjct: 226 GSIPETIGNCTAFQVLDLSYNQLTGEIPFDIGFLQVATLSLQGNQLS-GKIPSVIGLMQA 284

Query: 274 LRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFV 309
           L  LD S N+L+GSIP  LG ++  E L L +NK  
Sbjct: 285 LAVLDLSGNLLSGSIPPILGNLTFTEKLYLHSNKLT 320

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 150/362 (41%), Gaps = 67/362 (18%)

Query: 1   TMVNISFCYGK------SYVGCKESERGALLKLKRNLKDLSNCLASWN-IGDGDCCKWVG 53
           TM  + FC G         V    +E  AL+ +K +  +++N L  W+ + + D C W G
Sbjct: 6   TMKGLFFCLGMVVFMLLGSVSPMNNEGKALMAIKASFSNVANMLLDWDDVHNHDFCSWRG 65

Query: 54  NFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHV 113
            FC+N++ +++ LNL N     + S A            +G+L NLQ +DL     +L  
Sbjct: 66  VFCDNVSLNVVSLNLSNLNLGGEISSA------------LGDLMNLQSIDLQ--GNKLGG 111

Query: 114 DSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSL 173
                + + + L ++D     L       I  L+ L F+ L  NQ  G IP+TL  + +L
Sbjct: 112 QIPDEIGNCVSLAYVDFSTNLLFGDIPFSISKLKQLEFLNLKNNQLTGPIPATLTQIPNL 171

Query: 174 KQIDLSHNQFNFTSPGWLSKLNELSSFL----------LNLVSCM--------VRFHQL- 214
           K +DL+ NQ     P  L   NE+  +L          L+   C         VR + L 
Sbjct: 172 KTLDLARNQLTGEIPRLL-YWNEVLQYLGLRGNMLTGTLSPDMCQLTGLWYFDVRGNNLT 230

Query: 215 --IP------TSF-----------------IRLCKLTSIDFSSVKLSQDISQVLDIFSAY 249
             IP      TSF                 I   ++ ++     KL+  I +V+ +  A 
Sbjct: 231 GTIPESIGNCTSFEILDVSYNQITGVIPYNIGFLQVATLSLQGNKLTGRIPEVIGLMQAL 290

Query: 250 GTYALVSLILSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFV 309
               L    L+   I   LG LS    L    N L G IP  LG +S L YL L++N+ V
Sbjct: 291 AVLDLSDNELT-GPIPPILGNLSFTGKLYLHGNKLTGQIPPELGNMSRLSYLQLNDNELV 349

Query: 310 TK 311
            K
Sbjct: 350 GK 351

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 100/219 (45%), Gaps = 7/219 (3%)

Query: 93  VGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152
           +G  SNL+ LDL       HV    +L +L  LE + L    L       +  +++L +I
Sbjct: 165 IGVFSNLRVLDLGGNVLTGHVPG--YLGNLSRLEFLTLASNQLTGGVPVELGKMKNLKWI 222

Query: 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFH 212
            L YN   G+IP  +G L+SL  +DL +N  +   P  L  L +L    L       +  
Sbjct: 223 YLGYNNLSGEIPYQIGGLSSLNHLDLVYNNLSGPIPPSLGDLKKLEYMFL----YQNKLS 278

Query: 213 QLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKLS 272
             IP S   L  L S+DFS   LS +I +++    +     L S  L+  +I   +  L 
Sbjct: 279 GQIPPSIFSLQNLISLDFSDNSLSGEIPELVAQMQSLEILHLFSNNLT-GKIPEGVTSLP 337

Query: 273 SLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTK 311
            L+ L    N  +G IP +LG+ ++L  LDLS N    K
Sbjct: 338 RLKVLQLWSNRFSGGIPANLGKHNNLTVLDLSTNNLTGK 376

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 145/350 (41%), Gaps = 65/350 (18%)

Query: 19  SERGALLKLKRNLKDLSNCLASWN-IGDGDCCKWVGNFCNNLTGHILELNLENPFGYLKY 77
           +E  AL+ +K +  +L N L  W+ + + D C W G FC+N++  ++ LNL +     + 
Sbjct: 28  NEGKALMAIKGSFSNLVNMLLDWDDVHNSDLCSWRGVFCDNVSYSVVSLNLSSLNLGGEI 87

Query: 78  SDAEDDDHYMRS------KLV------VGNLSNLQYLDLS----WIDCRLHVDSLSWLSS 121
           S A  D   ++S      KL       +GN ++L YLDLS    + D    +  L  L +
Sbjct: 88  SPAIGDLRNLQSIDLQGNKLAGQIPDEIGNCASLVYLDLSENLLYGDIPFSISKLKQLET 147

Query: 122 LLL------------------LEHIDLGQVHLGKASDCWIY------------------- 144
           L L                  L+ +DL   HL       +Y                   
Sbjct: 148 LNLKNNQLTGPVPATLTQIPNLKRLDLAGNHLTGEISRLLYWNEVLQYLGLRGNMLTGTL 207

Query: 145 -----SLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSS 199
                 L  L++  +  N   G IP ++GN TS + +D+S+NQ     P     +  L  
Sbjct: 208 SSDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFQILDISYNQITGEIP---YNIGFLQV 264

Query: 200 FLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLIL 259
             L+L     R    IP     +  L  +D S  +L   I  +L   S  G   L   +L
Sbjct: 265 ATLSLQGN--RLTGRIPEVIGLMQALAVLDLSDNELVGPIPPILGNLSFTGKLYLHGNML 322

Query: 260 SHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFV 309
           +   I + LG +S L  L  + N L G+IP  LG++  L  L+L+NN+ V
Sbjct: 323 T-GPIPSELGNMSRLSYLQLNDNKLVGTIPPELGKLEQLFELNLANNRLV 371

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9S7I6|RPK2_ARATH LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana GN=RPK2 PE=1 SV=1

 Score = 75.1 bits (183), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 136/312 (43%), Gaps = 36/312 (11%)

Query: 18  ESERGALLKLKRNLKDLSNCLASWNIGDGDCCKWVGNFCNNLTGHILELNL--------- 68
           +S++  LL+ K+ + D  + LASW     D C W G  C++ +  ++ LN+         
Sbjct: 44  DSDKSVLLRFKKTVSDPGSILASWVEESEDYCSWFGVSCDS-SSRVMALNISGSGSSEIS 102

Query: 69  ENPF-----------GYLKYSDAEDDDHYMRSKL--VVGNLSNLQYLDLSWIDCRLHVDS 115
            N F           G+    D   +   +   L  V+ +L+ L+ L L +      +  
Sbjct: 103 RNRFTCGDIGKFPLYGFGVRRDCTGNHGALAGNLPSVIMSLTGLRVLSLPFNSFSGEIPV 162

Query: 116 LSWLSSLLLLEHIDL-GQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLK 174
             W   +  LE +DL G +  G   D +   LR+L  + L +N+  G+IP++L NLT L+
Sbjct: 163 GIW--GMEKLEVLDLEGNLMTGSLPDQFT-GLRNLRVMNLGFNRVSGEIPNSLQNLTKLE 219

Query: 175 QIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLC-KLTSIDFSSV 233
            ++L  N+ N T PG++ +   L    LN +         +P      C KL  +D S  
Sbjct: 220 ILNLGGNKLNGTVPGFVGRFRVL-HLPLNWL------QGSLPKDIGDSCGKLEHLDLSGN 272

Query: 234 KLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLG 293
            L+  I + L   +   +  L    L    I    G L  L  LD S N L+G +P+ LG
Sbjct: 273 FLTGRIPESLGKCAGLRSLLLYMNTLEET-IPLEFGSLQKLEVLDVSRNTLSGPLPVELG 331

Query: 294 QISHLEYLDLSN 305
             S L  L LSN
Sbjct: 332 NCSSLSVLVLSN 343

Key regulator of anther development (e.g. lignification pattern), including tapetum degradation during pollen maturation (e.g. germination capacity). Together with RPK1, required for pattern formation along the radial axis (e.g. the apical embryonic domain cell types that generate cotyledon primordia), and the apical-basal axis (e.g. differentiation of the basal pole during early embryogenesis).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL51|Y5694_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 OS=Arabidopsis thaliana GN=At5g06940 PE=3 SV=1

 Score = 74.7 bits (182), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 136/317 (42%), Gaps = 41/317 (12%)

Query: 17  KESERGALLKLKRNLKDLSNCLASW-NIGDGDCCKWVGNFCN---------------NLT 60
           +  E G LL+ K +  D    L+ W N      C W G  C                NL+
Sbjct: 29  ENEELGNLLRFKASFDDPKGSLSGWFNTSSSHHCNWTGITCTRAPTLYVSSINLQSLNLS 88

Query: 61  GHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLS----WIDCRLHVDSL 116
           G I +   + P  YL + D   +       L +     L+ L+LS    W       D +
Sbjct: 89  GEISDSICDLP--YLTHLDLSLNFFNQPIPLQLSRCVTLETLNLSSNLIWGTIP---DQI 143

Query: 117 SWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQI 176
           S  SSL +   ID    H+       +  L +L  + L  N   G +P  +G L+ L  +
Sbjct: 144 SEFSSLKV---IDFSSNHVEGMIPEDLGLLFNLQVLNLGSNLLTGIVPPAIGKLSELVVL 200

Query: 177 DLSHNQFNFTS-PGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKL 235
           DLS N +  +  P +L KL++L   LL+       FH  IPTSF+ L  L ++D S   L
Sbjct: 201 DLSENSYLVSEIPSFLGKLDKLEQLLLHRSG----FHGEIPTSFVGLTSLRTLDLSLNNL 256

Query: 236 SQDISQVLDIFSAYGTYALVSLILSHCQISAAL--GKLSSLRNLDFSL--NMLNGSIPLS 291
           S +I + L          LVSL +S  ++S +   G  S  R ++ SL  N   GS+P S
Sbjct: 257 SGEIPRSL----GPSLKNLVSLDVSQNKLSGSFPSGICSGKRLINLSLHSNFFEGSLPNS 312

Query: 292 LGQISHLEYLDLSNNKF 308
           +G+   LE L + NN F
Sbjct: 313 IGECLSLERLQVQNNGF 329

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0G7|PXL2_ARATH Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 134/349 (38%), Gaps = 70/349 (20%)

Query: 20  ERGALLKLKRNLKDLSNCLASWNIGD-GDCCKWVGNFCNNLTGHILELNLENPFGYLKYS 78
           E   LL +K  L D  N L  W + D  D C W G  CN+  G++ +L+L      +  +
Sbjct: 30  ELSVLLSVKSTLVDPLNFLKDWKLSDTSDHCNWTGVRCNS-NGNVEKLDLAG----MNLT 84

Query: 79  DAEDDDHYMRSKLVVGNLS--NLQYLDLSWIDCRLHVD--SLSWLSSLLLLEHIDLGQVH 134
               D     S LV  N+S    + L    I     +D    S+  SL L  +  LG VH
Sbjct: 85  GKISDSISQLSSLVSFNISCNGFESLLPKSIPPLKSIDISQNSFSGSLFLFSNESLGLVH 144

Query: 135 L---------------GKASDCWIYSLRHLFF---------------------------- 151
           L               G      +  LR  FF                            
Sbjct: 145 LNASGNNLSGNLTEDLGNLVSLEVLDLRGNFFQGSLPSSFKNLQKLRFLGLSGNNLTGEL 204

Query: 152 ------------IVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSS 199
                        +L YN+F+G IP   GN+ SLK +DL+  + +   P  L KL  L +
Sbjct: 205 PSVLGQLPSLETAILGYNEFKGPIPPEFGNINSLKYLDLAIGKLSGEIPSELGKLKSLET 264

Query: 200 FLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLIL 259
            LL        F   IP     +  L  +DFS   L+ +I   +          L+   L
Sbjct: 265 LLL----YENNFTGTIPREIGSITTLKVLDFSDNALTGEIPMEITKLKNLQLLNLMRNKL 320

Query: 260 SHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
           S   I  A+  L+ L+ L+   N L+G +P  LG+ S L++LD+S+N F
Sbjct: 321 SG-SIPPAISSLAQLQVLELWNNTLSGELPSDLGKNSPLQWLDVSSNSF 368

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q05091|PGIP_PYRCO Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 135/298 (45%), Gaps = 34/298 (11%)

Query: 16  CKESERGALLKLKRNLKDLSNCLASWNIGDGDCCKWVGNFCNNLTGHILELNLENPFGYL 75
           C   ++  LL++K+   D    LASW   D DCC W    C++ T  I  L +       
Sbjct: 27  CNPDDKKVLLQIKKAFGD-PYVLASWK-SDTDCCDWYCVTCDSTTNRINSLTI------- 77

Query: 76  KYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHL 135
            ++         +   +VG+L  L+ L+       L       ++ L  L+ + L   +L
Sbjct: 78  -FAGQVSG----QIPALVGDLPYLETLEFHK-QPNLTGPIQPAIAKLKGLKSLRLSWTNL 131

Query: 136 GKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLN 195
             +   ++  L++L F+ LS+N   G IPS+L  L +L  + L  N+     P       
Sbjct: 132 SGSVPDFLSQLKNLTFLDLSFNNLTGAIPSSLSELPNLGALRLDRNKLTGHIP------I 185

Query: 196 ELSSFLLNLVSCMVRFHQL---IPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTY 252
               F+ N+    +  +QL   IPTSF ++   TSID S  KL  D S    IF    T 
Sbjct: 186 SFGQFIGNVPDLYLSHNQLSGNIPTSFAQM-DFTSIDLSRNKLEGDASV---IFGLNKTT 241

Query: 253 ALVSLILSHCQISAALGKL---SSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNK 307
            +V   LS   +   L K+   +SL +LD + N + GSIP+   Q+ + ++L++S N+
Sbjct: 242 QIVD--LSRNLLEFNLSKVEFPTSLTSLDINHNKIYGSIPVEFTQL-NFQFLNVSYNR 296

Inhibitor of fungal polygalacturonase. It is an important factor for plant resistance to phytopathogenic fungi.

Pyrus communis (taxid: 23211)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
209970622	965	HB06p [Malus floribunda]	0.977	0.317	0.321	6e-33
255543977	1075	serine/threonine-protein kinase bri1, pu	0.961	0.28	0.310	8e-32
350284759	980	receptor-like protein [Malus micromalus]	0.888	0.283	0.33	2e-31
14330718	915	HcrVf3 protein [Malus floribunda]	0.913	0.312	0.348	5e-31
350284761	915	receptor-like protein [Malus micromalus]	0.913	0.312	0.345	9e-31
209970631	962	HcrVf4 [Malus floribunda]	0.913	0.297	0.345	1e-30
350284753	915	receptor-like protein [Malus micromalus]	0.913	0.312	0.345	1e-30
350284773	1041	receptor-like protein [Malus x domestica	0.926	0.278	0.305	3e-30
209970603	1038	AM19-5p [Malus floribunda]	0.897	0.270	0.312	3e-30
350284763	982	receptor-like protein [Malus micromalus]	0.884	0.282	0.297	6e-30

>gi|209970622|gb|ACJ03072.1| HB06p [Malus floribunda]

 Score =  147 bits (371), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 119/370 (32%), Positives = 175/370 (47%), Gaps = 64/370 (17%)

Query: 1   TMVNISFCYGKSYVGCKESERGALLKLKRNLKDLSNCLASWNIGDGDCCKWVGNFCNNLT 60
           T  ++  C G   V C+E E+ ALL  K+ L+D SN L+SW I DGDCC W G  C+ LT
Sbjct: 46  TFTDVGLCNGNLRVRCREGEKRALLMFKQGLEDPSNRLSSW-ISDGDCCNWTGVVCDPLT 104

Query: 61  GHILELNLENP------------------------------FGYLKYSD-AEDDDHYMRS 89
           GH+ EL L NP                                +L Y D + ++   M+ 
Sbjct: 105 GHVRELRLTNPNFQRDFHYAIWDSYNSNTWLGGKINPSLLHLKHLNYLDLSYNNFQGMQI 164

Query: 90  KLVVGNLSNLQYLDLSWIDCR---------------------LHVDSLSWLSSLLLLEHI 128
              +G+L  L+YL+LS    R                     L V++L W+SSL  L+++
Sbjct: 165 PSFLGSLKTLRYLNLSEAGFRGLIPPQLGNLTNLHFLSLSDNLKVENLEWISSLFHLKYL 224

Query: 129 DLGQVHLGKASDCWIYSLRHLFFIVLSYN---QFQGKIPSTLGNLTSLKQIDLSHNQFNF 185
           DL  V++ KAS+ W+ ++  L F+V  +    Q     P  + N TSL  +DLS N F+ 
Sbjct: 225 DLSSVNVSKASN-WLQAINKLPFLVELHMVDCQLDHIPPLPIINFTSLSVLDLSENSFDS 283

Query: 186 TSPGWLSKLNELSSFLLNLVSCMVRF--HQLIPT-SFIRLCKLTSIDFSSVKLSQDISQV 242
             P W+  L  L+S  L        F  H   P  S   LC+L  +D S  K + + S +
Sbjct: 284 LMPRWVFSLRNLTSLYLENCGFQGTFSSHPKEPDLSLDNLCELMDLDLSYNKFNGNASDI 343

Query: 243 LDIFSAYGTYALVSLILSHCQISAAL----GKLSSLRNLDFSLNMLNGSIPLSLGQISHL 298
            +  S  G   + SL LS    S  L    G+  +L +L+   N ++G IP+SLG +S L
Sbjct: 344 FESLSVCGPDRIKSLSLSKNNFSGHLTEQVGEFRNLSHLEIYGNSISGPIPISLGNLSCL 403

Query: 299 EYLDLSNNKF 308
           E+L +S+N+F
Sbjct: 404 EFLIISDNRF 413

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543977|ref|XP_002513051.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223548062|gb|EEF49554.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 133/428 (31%), Positives = 185/428 (43%), Gaps = 127/428 (29%)

Query: 7   FCYGKSYVGCKESERGALLKLKRNLKDLSNCLASWNIGDGDCCKWVGNFCNNLTGHILEL 66
           F  G    GC +SER ALL  K +L D SN LA+W +GDGDCC+W G  C+N TGH+LEL
Sbjct: 29  FPVGFCNAGCIQSEREALLNFKLHLSDTSNKLANW-VGDGDCCRWSGVICHNSTGHVLEL 87

Query: 67  NLENP---------------------------------------FGYLKYSDAEDDD-HY 86
           +L  P                                         YL+Y D  +++   
Sbjct: 88  HLGTPSFSEYTGPGSFYSQQAASLSVEYYARTALAGKISPSLLNLKYLRYLDLSNNNFEG 147

Query: 87  MRSKLVVGNLSNLQYLDLS-------------------WIDCR--------------LHV 113
           +R    +G++ +L+YL+LS                   ++D R              +HV
Sbjct: 148 IRIPKFLGSMESLRYLNLSNAGFGGMIPPQLGNLSNLQYLDLRVGDVHGFRARYTFNMHV 207

Query: 114 DSLSW-------------------------LSSLLLLEHIDLGQVHLGKASDCWIYSLR- 147
           ++L W                         ++SL  L  + L +  LG AS     +L  
Sbjct: 208 ENLHWLSSLSSLKFLDLSYVNLYSFDWLNVINSLPSLLQLHLSRCQLGGASFPSTVNLNF 267

Query: 148 -HLFFIVLSYNQFQGKIPSTLGNLT-SLKQIDLSHNQFNFTSPGWLSKLNELSSFLLN-- 203
             L  + LS N FQG IP++L NLT SLK++DL +N FN + P WL     L    LN  
Sbjct: 268 SSLAILDLSVNDFQGPIPNSLQNLTSSLKELDLGYNSFNSSLPNWLYGFTNLEFLSLNSN 327

Query: 204 --------LVSCMVRFHQL-----------IPTSFIRLCKLTSIDFSSVKLSQDISQVLD 244
                   L+  M     L           IPTSF  LC L S+   +V LSQ I+ VL+
Sbjct: 328 RLQGNISSLIGNMTSLITLDLSSNLAISGGIPTSFKHLCNLRSLVLDTVTLSQKINDVLE 387

Query: 245 IFSAYGTYALVSLILSHCQISA----ALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEY 300
           I S   +  L S  +  CQ+S      LG   +L +LD S N ++G IP SL  + +L  
Sbjct: 388 ILSGCISDELESFSMYSCQLSGYLTDDLGHFKNLASLDLSYNSISGPIPKSLRHLCNLRS 447

Query: 301 LDLSNNKF 308
           LDLS N++
Sbjct: 448 LDLSGNRW 455

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284759|gb|AEQ27751.1| receptor-like protein [Malus micromalus]

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 132/400 (33%), Positives = 183/400 (45%), Gaps = 122/400 (30%)

Query: 16  CKESERGALLKLKRNLKDLSNCLASWNIGDG-DCCKWVGNFCNNLTGHILELNLE----- 69
           CKESER ALL  K++LKD +N LASW   +G DCC W    C+++TGHI EL+L      
Sbjct: 37  CKESERRALLMFKQDLKDPANQLASWVAEEGSDCCSWTRVVCDHMTGHIHELHLNGSDSD 96

Query: 70  -----------NP----FGYLKYSDAEDDDHYMRS------------------------- 89
                      NP      +L + D   +D Y                            
Sbjct: 97  LDPDSYFGGKINPSLLSLKHLNFLDLSYNDFYTTRIPSFFGSMTSLTHLNLAYSWFDGII 156

Query: 90  KLVVGNLSNLQYLDLSWI-DCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDC------- 141
              +GNLS+L YL+LS +    L V++L W+S L LL+H+DL  V+LGKASD        
Sbjct: 157 PHKLGNLSSLHYLNLSTLYRSNLKVENLQWISGLSLLKHLDLSNVNLGKASDWLQVTNML 216

Query: 142 -------------------------------------------WIYSLRHLFFIVLSYNQ 158
                                                      W++SL++L  I LS   
Sbjct: 217 PSLVELHMSYCHLHQIPPLPTPNFTSLVVLDLSGNSFNSLMSRWVFSLKNLISIHLSDCG 276

Query: 159 FQGKIPSTLGNLTSLKQIDLSHNQFNFT-SPGWL--SKLNELSSFLLNLVSCMVRFHQL- 214
           FQG IPS   N+TSL++IDLS N  +    P WL   K  ELS          +  +QL 
Sbjct: 277 FQGPIPSISQNITSLREIDLSSNYISLDLIPKWLFNQKFLELS----------LEANQLT 326

Query: 215 --IPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSH----CQISAAL 268
             +P+S   +  L +++    + +  I + L     Y    L SL LSH     +IS+++
Sbjct: 327 GQLPSSIQNMTGLIALNLGWNEFNSTIPEWL-----YSLNNLESLHLSHNALRGEISSSI 381

Query: 269 GKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
           G L SLR+LD S N ++G IP+SLG +S LE LD+S N+F
Sbjct: 382 GNLKSLRHLDLSNNSISGPIPMSLGNLSSLEKLDISVNQF 421

Source: Malus micromalus

Species: Malus micromalus

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14330718|emb|CAC40827.1| HcrVf3 protein [Malus floribunda]

 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 121/347 (34%), Positives = 167/347 (48%), Gaps = 61/347 (17%)

Query: 16  CKESERGALLKLKRNLKDLSNCLASW---NIGDGDCCKWVGNFCNNLTGHILELNLEN-- 70
           CKESER ALL  K++LKD +N LASW      D DCC W G  C++ TGHI EL+L N  
Sbjct: 37  CKESERQALLMFKQDLKDPTNRLASWVAEEDSDSDCCSWTGVVCDHTTGHIHELHLNNTD 96

Query: 71  PFGYLKYSDAE-----------------DDDHYMRSKLV--------------------- 92
           PF  LK S                     ++++  +++                      
Sbjct: 97  PFLDLKSSFGGKINPSLLSLKHLNFLDLSNNYFYPTQIPSFFGSMTSLTHLNLAYSRFGG 156

Query: 93  -----VGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYS-- 145
                +GNLS+L+YL+LS     L V++L W+S L LL+H+DL  V+L KASD W+    
Sbjct: 157 IIPHKLGNLSSLRYLNLSSNSIYLKVENLQWISGLSLLKHLDLSGVNLSKASD-WLQVTN 215

Query: 146 -LRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNL 204
            L  L  +++S  Q     P    N TSL  +DLS N FN   P W+  L  L S  ++L
Sbjct: 216 MLPSLVKLIMSDCQLYQIPPLPTTNFTSLVVLDLSFNNFNSLMPRWVFSLKNLVS--IHL 273

Query: 205 VSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLS-QDISQVLDIFSAYGTYALVSLILSHCQ 263
             C   F   IP+    +  L  ID S    + Q  S++ +  S  G   + SL L +  
Sbjct: 274 SDC--GFQGPIPSISQNITYLREIDLSDNNFTVQRPSEIFESLSRCGPDGIKSLSLRNTN 331

Query: 264 ISA----ALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNN 306
           +S     +L  LSSL  LD S+N  NG+    +GQ+  L YLD+S N
Sbjct: 332 VSGHIPMSLRNLSSLEKLDISVNQFNGTFTEVIGQLKMLTYLDISYN 378

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284761|gb|AEQ27752.1| receptor-like protein [Malus micromalus]

 Score =  140 bits (352), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 167/347 (48%), Gaps = 61/347 (17%)

Query: 16  CKESERGALLKLKRNLKDLSNCLASW---NIGDGDCCKWVGNFCNNLTGHILELNLEN-- 70
           CKESER ALL  K++LKD +N LASW      D DCC W G  C++ TGHI EL+L N  
Sbjct: 37  CKESERQALLMFKQDLKDPTNRLASWVAEEDSDSDCCSWTGVVCDHTTGHIHELHLNNTD 96

Query: 71  PFGYLKYSDAE-----------------DDDHYMRSKLV--------------------- 92
           PF  LK S                     ++++  +++                      
Sbjct: 97  PFLDLKSSFGGKINPSLLSLKHLNFLDLSNNYFYPTQIPSFFGSMTSLTHLNLAYSRFGG 156

Query: 93  -----VGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIY--- 144
                +GNLS+L+YL+LS     L V++L W+S L LL+H+DL  V+L KASD W+    
Sbjct: 157 IIPHKLGNLSSLRYLNLSSNSIYLKVENLQWISGLSLLKHLDLSGVNLSKASD-WLQVTN 215

Query: 145 SLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNL 204
            L  L  +++S  Q     P    N TSL  +DLS N FN   P W+  L  L S  ++L
Sbjct: 216 MLPSLVKLIMSDCQLYQIPPLPTTNFTSLVVLDLSFNNFNSLMPRWVFSLKNLVS--IHL 273

Query: 205 VSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLS-QDISQVLDIFSAYGTYALVSLILSHCQ 263
             C   F   IP+    +  L  ID S    + Q  S++ +  S  G   + SL L +  
Sbjct: 274 SDC--GFQGPIPSISQNITYLREIDLSDNNFTVQRPSEIFESLSRCGPDGIKSLSLRNTN 331

Query: 264 ISA----ALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNN 306
           +S     +LG +SSL  LD S+N  NG+    +GQ+  L  LD+S N
Sbjct: 332 VSGPIPMSLGNMSSLEKLDISVNQFNGTFTEVIGQLKMLTDLDISYN 378

Source: Malus micromalus

Species: Malus micromalus

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970631|gb|ACJ03074.1| HcrVf4 [Malus floribunda]

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 167/347 (48%), Gaps = 61/347 (17%)

Query: 16  CKESERGALLKLKRNLKDLSNCLASW---NIGDGDCCKWVGNFCNNLTGHILELNLEN-- 70
           CKESER ALL  K++LKD +N LASW      D DCC W G  C++ TGHI EL+L N  
Sbjct: 84  CKESERQALLMFKQDLKDPTNRLASWVAEEDSDSDCCSWTGVVCDHTTGHIHELHLNNTD 143

Query: 71  PFGYLKYSDAE-----------------DDDHYMRSKLV--------------------- 92
           PF  LK S                     ++++  +++                      
Sbjct: 144 PFLDLKSSFGGKINPSLLSLKHLNFLDLSNNYFYPTQIPSFFGSMTSLTHLNLAYSRFGG 203

Query: 93  -----VGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYS-- 145
                +GNLS+L+YL+LS     L V++L W+S L LL+H+DL  V+L KASD W+    
Sbjct: 204 IIPHKLGNLSSLRYLNLSSNSIYLKVENLQWISGLSLLKHLDLSGVNLSKASD-WLQVTN 262

Query: 146 -LRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNL 204
            L  L  +++S  Q     P    N TSL  +DLS N FN   P W+  L  L S  ++L
Sbjct: 263 MLPSLVKLIMSDCQLYQIPPLPTTNFTSLVVLDLSFNNFNSLMPRWVFSLKNLVS--IHL 320

Query: 205 VSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLS-QDISQVLDIFSAYGTYALVSLILSHCQ 263
             C   F   IP+    +  L  ID S    + Q  S++ +  S  G   + SL L +  
Sbjct: 321 SDC--GFQGPIPSISQNITYLREIDLSDNNFTVQRPSEIFESLSRCGPDGIKSLSLRNTN 378

Query: 264 ISA----ALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNN 306
           +S     +LG +SSL  LD S+N  NG+    +GQ+  L  LD+S N
Sbjct: 379 VSGPIPMSLGNMSSLEKLDISVNQFNGTFTEVIGQLKMLTDLDISYN 425

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284753|gb|AEQ27748.1| receptor-like protein [Malus micromalus]

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 167/347 (48%), Gaps = 61/347 (17%)

Query: 16  CKESERGALLKLKRNLKDLSNCLASW---NIGDGDCCKWVGNFCNNLTGHILELNLEN-- 70
           CKESER ALL  K++LKD +N LASW      D DCC W G  C++ TGHI EL+L N  
Sbjct: 37  CKESERQALLMFKQDLKDPTNRLASWVAEEDSDSDCCSWTGVVCDHTTGHIHELHLNNTD 96

Query: 71  PFGYLKYSDAE-----------------DDDHYMRSKLV--------------------- 92
           PF  LK S                     ++++  +++                      
Sbjct: 97  PFLDLKSSFGGKINPSLLSLKHLNFLDLSNNYFYPTQIPSFFGSMTSLTHLNLAYSRFGG 156

Query: 93  -----VGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYS-- 145
                +GNLS+L+YL+LS     L V++L W+S L LL+H+DL  V+L KASD W+    
Sbjct: 157 IIPHKLGNLSSLRYLNLSSNSIYLKVENLQWISGLSLLKHLDLSGVNLSKASD-WLQVTN 215

Query: 146 -LRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNL 204
            L  L  +++S  Q     P    N TSL  +DLS N FN   P W+  L  L S  ++L
Sbjct: 216 MLPSLVKLIMSDCQLYQIPPLPTTNFTSLVVLDLSFNNFNSLMPRWVFSLKNLVS--IHL 273

Query: 205 VSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLS-QDISQVLDIFSAYGTYALVSLILSHCQ 263
             C   F   IP+    +  L  ID S    + Q  S++ +  S  G   + SL L +  
Sbjct: 274 SDC--GFQGPIPSISQNITYLREIDLSDNNFTVQRPSEIFESLSRCGPDGIKSLSLRNTN 331

Query: 264 ISA----ALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNN 306
           +S     +LG +SSL  LD S+N  NG+    +GQ+  L  LD+S N
Sbjct: 332 VSGPIPMSLGNMSSLEKLDISVNQFNGTFTEVIGQLKMLTDLDISYN 378

Source: Malus micromalus

Species: Malus micromalus

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284773|gb|AEQ27758.1| receptor-like protein [Malus x domestica]

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 124/406 (30%), Positives = 184/406 (45%), Gaps = 116/406 (28%)

Query: 16  CKESERGALLKLKRNLKDLSNCLASWNIGDG-DCCKWVGNFCNNLTGHILELNLENPFGY 74
           CKESER ALL  K++LKD +N LASW   +G DCC W   FC ++TGHI EL+L N F +
Sbjct: 37  CKESERQALLLFKQDLKDPANQLASWVAEEGSDCCSWTRVFCGHMTGHIQELHL-NGFCF 95

Query: 75  LKYSDAED---------------------------DDHYMRSKLV--------------- 92
             +SD+ D                           ++++ R+++                
Sbjct: 96  HSFSDSFDLDFDSCFSGKINPSLLNLKHLNFLDLSNNNFNRTQIPSFFGSMTSLTHLNLA 155

Query: 93  -----------VGNLSNLQYLDLS--WIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKAS 139
                      +GNLS+L+YL+LS  +    L V++L W+SSL LL+H+DL  V+L KAS
Sbjct: 156 NSEFYGIIPHKLGNLSSLRYLNLSSGFFGPHLKVENLQWISSLSLLKHLDLSSVNLSKAS 215

Query: 140 DC--------------------------------------------------WIYSLRHL 149
           D                                                   W++SL++L
Sbjct: 216 DWLQVTNMLPSLVELIMSDCELYQIPPLPTPNFTSLVVLDLSVNFFNSLMPRWVFSLKNL 275

Query: 150 FFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTS-PGWLSKLNELSSFLLNLVSCM 208
             + LS   FQG IPS   N+TSL++IDLS N  +    P WL    +L+      +S  
Sbjct: 276 VSLRLSACWFQGPIPSISQNITSLREIDLSGNYLSLDPIPKWLFNQKDLA------LSLE 329

Query: 209 VRFHQ-LIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA 267
              H   +P+S   +  L ++D S    +  I + L          L+S  + H +IS++
Sbjct: 330 FNNHTGQLPSSIQNMTGLIALDLSFNDFNSTIPEWL-YSLTNLESLLLSSSVLHGEISSS 388

Query: 268 LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTKKK 313
           +G ++SL NL    N L G IP SLG +  L+ LDLS N F+ ++ 
Sbjct: 389 IGNMTSLVNLHLDGNQLEGKIPNSLGHLCKLKVLDLSENHFMVRRP 434

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970603|gb|ACJ03064.1| AM19-5p [Malus floribunda]

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 127/407 (31%), Positives = 186/407 (45%), Gaps = 126/407 (30%)

Query: 16  CKESERGALLKLKRNLKDLSNCLASWNIG-DGDCCKWVGNFCNNLTGHILELNLE----- 69
           CK+SER ALL  K++LKD +N L+SW    D DCC W G  C+++TGHI EL+L      
Sbjct: 38  CKDSERQALLMFKQDLKDPANRLSSWVAEEDSDCCSWTGVVCDHITGHIHELHLNSSNFD 97

Query: 70  -----------NP----FGYLKYSDAEDDDHYMRSKLV---------------------- 92
                      NP      +L Y D  ++D +  +++                       
Sbjct: 98  WYINSFFGGKINPSLLSLKHLNYLDLSNND-FSSTQIPSFFGSMTSLTHLNLGTSEFDGI 156

Query: 93  ----VGNLSNLQYLDLSWI-DCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDC------ 141
               +GNLS+L+YL+LS +   RL V++L W++ L LL+H+DL  V+L KASD       
Sbjct: 157 IPHNLGNLSSLRYLNLSSLYGPRLKVENLQWIAGLSLLKHLDLSYVNLSKASDWLQVTNM 216

Query: 142 --------------------------------------------WIYSLRHLFFIVLSYN 157
                                                       W++SL++L  + +S  
Sbjct: 217 LPSLVELIMLDCQLDQIAPLPTPNFTSLVVLDLSINFFNSLMPRWVFSLKNLVSLHISDC 276

Query: 158 QFQGKIPSTLGNLTSLKQIDLSHNQFNFTS----PGWLSKLNELSSFLLNLVSCMVRFHQ 213
            FQG IPS   N+TSL++IDLS   FN+ S    P WL        F    +   +  +Q
Sbjct: 277 GFQGPIPSISENITSLREIDLS---FNYISLDLIPKWL--------FNQKFLKLSLEQNQ 325

Query: 214 LI---PTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILS----HCQISA 266
           LI   P+S   +  LT+++    K +  I + L     Y    L SLILS      +IS+
Sbjct: 326 LIGQLPSSIQNMTGLTTLNLEGNKFNSTIPEWL-----YNLNNLESLILSSNAFRGEISS 380

Query: 267 ALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTKKK 313
           ++G ++SL NL    N+L G IP SLG +  L+ LDLS N F  ++ 
Sbjct: 381 SIGNMTSLVNLHLDNNLLEGKIPNSLGHLCKLKVLDLSENHFTVRRP 427

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284763|gb|AEQ27753.1| receptor-like protein [Malus micromalus]

 Score =  137 bits (345), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 120/403 (29%), Positives = 183/403 (45%), Gaps = 126/403 (31%)

Query: 16  CKESERGALLKLKRNLKDLSNCLASWNIG-DGDCCKWVGNFCNNLTGHILELNL------ 68
           CKESER ALL  K++LKD +N LASW    D DCC W G  C++ TGHI EL+L      
Sbjct: 37  CKESERQALLMFKQDLKDPANRLASWVAEEDSDCCSWTGVVCDHTTGHIHELHLNNTDSF 96

Query: 69  ---ENPFG-----------YLKYSDAEDDD-----------------HYMRSKLV----- 92
              E+ FG           +L + D  +++                 H   +  V     
Sbjct: 97  LDFESSFGGKINPSLLSLKHLNFLDLSNNNFNGAQIPSFFGSMTSLKHLNLAYSVFGGVI 156

Query: 93  ---VGNLSNLQYLDLS-WIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDC------- 141
              +GNLS+L+YL+LS +    L V+++ W+S L LL+H+DL  V+L KASD        
Sbjct: 157 PHKLGNLSSLRYLNLSSFYGSNLKVENIQWISGLPLLKHLDLSSVNLSKASDWLQVTNML 216

Query: 142 ---------------------------------------------WIYSLRHLFFIVLSY 156
                                                        W++S+++L ++ L+ 
Sbjct: 217 PSLVELIMSDCQLDQIPHLPTPNFTSLVVLDLSEINYNSLSLMPRWVFSIKNLVYLRLNL 276

Query: 157 NQFQGKIPSTLGNLTSLKQIDLSHNQFNFTS-PGWLSKLNELSSFLLNLVSCMVRFHQL- 214
             FQG IPS   N+TSL++IDL+ N  +    P WL    +L+          + F+ L 
Sbjct: 277 CGFQGPIPSISQNITSLREIDLADNSISLDPIPKWLFNQKDLA--------LSLEFNHLT 328

Query: 215 --IPTSFIRLCKLTSIDFSSVKLSQDISQVL-------DIFSAYGTYALVSLILSHCQIS 265
             +P+S   +  LT+++      +  I + L        +  +Y  +        H +IS
Sbjct: 329 GQLPSSIQNMTGLTALNLEGNDFNSTIPEWLYSLNNLESLLLSYNAF--------HGEIS 380

Query: 266 AALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
           +++G L SLR+ D S N ++G IP+SLG +S LE LD+S N F
Sbjct: 381 SSIGNLKSLRHFDLSSNSISGPIPMSLGNLSSLEKLDISGNHF 423

Source: Malus micromalus

Species: Malus micromalus

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.888	0.269	0.283	2.4e-20
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.878	0.308	0.313	3.6e-19
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.798	0.261	0.311	6.6e-19
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.897	0.274	0.288	1.5e-18
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.817	0.271	0.307	3.6e-18
TAIR|locus:2094613	784	RLP38 "receptor like protein 3	0.859	0.343	0.315	5.7e-18
TAIR|locus:2096339	786	RLP30 "receptor like protein 3	0.875	0.348	0.284	2e-17
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.904	0.289	0.280	2.1e-16
TAIR|locus:2005507	976	ER "ERECTA" [Arabidopsis thali	0.904	0.289	0.275	4.7e-16
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.884	0.281	0.275	3.5e-15

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 2.4e-20, P = 2.4e-20
 Identities = 87/307 (28%), Positives = 137/307 (44%)

Query:    18 ESERGALLKLKRNLKDLSN--CLASWNIGDGDCCKWVGNFCNNLTGHILELNLE------ 69
             E++  ALL+ K  + + +    LASWN      C W+G  C      ++ LNL       
Sbjct:    29 ETDMQALLEFKSQVSENNKREVLASWN-HSSPFCNWIGVTCGRRRERVISLNLGGFKLTG 87

Query:    70 --NP----FGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDXXXXXXXXX 123
               +P      +L+  +  D+         VG L  LQYL++S+      +          
Sbjct:    88 VISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRL 147

Query:   124 XXEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQF 183
                 +DL   HLG      + SL  L  + LS N   G  P++LGNLTSL+++D ++NQ 
Sbjct:   148 ST--VDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQM 205

Query:   184 NFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVL 243
                 P  +++L ++  F + L S    F    P +   +  L S+  +    S ++    
Sbjct:   206 RGEIPDEVARLTQMVFFQIALNS----FSGGFPPALYNISSLESLSLADNSFSGNLRA-- 259

Query:   244 DIFSAYGTYALVSLILSHCQISAALGK----LSSLRNLDFSLNMLNGSIPLSLGQISHLE 299
             D    Y    L  L+L   Q + A+ K    +SSL   D S N L+GSIPLS G++ +L 
Sbjct:   260 DF--GYLLPNLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLW 317

Query:   300 YLDLSNN 306
             +L + NN
Sbjct:   318 WLGIRNN 324

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 3.6e-19, P = 3.6e-19
 Identities = 99/316 (31%), Positives = 142/316 (44%)

Query:    16 CKESERGALLKLKRNLK------DLSNCL---ASWNIGDGDCCKWVGNFCNNLTGHILEL 66
             C   +R ALL+ K          DL   L   A W   + DCC W G  C+  TG ++EL
Sbjct:    26 CLPDQRDALLEFKNEFSIPSPDSDLMLILQTTAKWR-NNTDCCSWGGISCDPKTGVVVEL 84

Query:    67 NLENPF--GYLKYSDAEDDDHYMRS-KLVVGNLS--------NLQYLD-LSWIDCRLHVD 114
             +L N    G L+ + +     +++S  L   +LS        N +YL  L+ + C L  +
Sbjct:    85 DLGNSDLNGRLRSNSSLFRLQHLQSLDLSYNDLSCTLPDSSGNFKYLRVLNLLGCNLFGE 144

Query:   115 XXXXXXXXXXXEHIDLG-QVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSL 173
                          +DL     L       + +L+HL  + L+  +F GKIPS+LGNLT L
Sbjct:   145 IPTSLRSLSYLTDLDLSYNDDLTGEILDSMGNLKHLRVLSLTSCKFTGKIPSSLGNLTYL 204

Query:   174 KQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSV 233
               +DLS N F    P  +  L  L   +LNL  C   F   IPTS   L  LT +D S  
Sbjct:   205 TDLDLSWNYFTGELPDSMGNLKSLR--VLNLHRC--NFFGKIPTSLGSLSNLTDLDISKN 260

Query:   234 KLSQDISQVLDIFSAYGTYALVSLI-LSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSL 292
             +           F++ G  ++ SL  L+  Q+   L  LSSL N+D S N     +P ++
Sbjct:   261 E-----------FTSEGPDSMSSLNRLTDFQLM--LLNLSSLTNVDLSSNQFKAMLPSNM 307

Query:   293 GQISHLEYLDLSNNKF 308
               +S LE  D+S N F
Sbjct:   308 SSLSKLEAFDISGNSF 323

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 6.6e-19, P = 6.6e-19
 Identities = 84/270 (31%), Positives = 126/270 (46%)

Query:    40 SWNIGDGDCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNL 99
             SW   + DCC W G  CN  +G ++EL+L         S      H   S   + NL  L
Sbjct:    75 SWG-NNSDCCNWEGVTCNAKSGEVIELDLS-------CSSLHGRFH---SNSSIRNLHFL 123

Query:   100 QYLDLSWIDCRLHVDXXXXXXXXXXXEHIDLGQVHL-GKASDCWIYSLRHLFFIVLSYNQ 158
               LDLS+ D +  +             ++DL   H  G+  +  I +L  L ++ L  NQ
Sbjct:   124 TTLDLSFNDFKGQITSSIENLSHLT--YLDLSSNHFSGQILNS-IGNLSRLTYLNLFDNQ 180

Query:   159 FQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTS 218
             F G+ PS++ NL+ L  +DLS+N+F    P  +  L+ L++  L+L S   +F   IP+S
Sbjct:   181 FSGQAPSSICNLSHLTFLDLSYNRFFGQFPSSIGGLSHLTT--LSLFSN--KFSGQIPSS 236

Query:   219 FIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKLSSLRNLD 278
                L  LT++D S+   S  I   +   S      L S      +I ++ G L+ L  L 
Sbjct:   237 IGNLSNLTTLDLSNNNFSGQIPSFIGNLSQLTFLGLFSNNFVG-EIPSSFGNLNQLTRLY 295

Query:   279 FSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
                N L+G+ P  L  ++ L  L LSNNKF
Sbjct:   296 VDDNKLSGNFPNVLLNLTGLSLLSLSNNKF 325

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 1.5e-18, P = 1.5e-18
 Identities = 88/305 (28%), Positives = 136/305 (44%)

Query:    17 KESERGALLKLKRNLKDLSNC-LASWNIGDGDCCKWVGNFCN----NLTGHILE-LNLE- 69
             +E+++ ALL+ K  + + S   L SWN      C W G  C      +TG  L  L L  
Sbjct:    37 EETDKQALLEFKSQVSETSRVVLGSWN-DSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTG 95

Query:    70 --NPF-GYLKYSDAED-DDHYMRSKLV--VGNLSNLQYLDLSWIDCRLHVDXXXXXXXXX 123
               +PF G L +  + +  D++    +   VGNL  LQYL++S  +               
Sbjct:    96 VVSPFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMS--NNLFGGVIPVVLSNCS 153

Query:   124 XXEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQF 183
                 +DL   HL +       SL  L  + L  N   GK P++LGNLTSL+ +D  +NQ 
Sbjct:   154 SLSTLDLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQI 213

Query:   184 NFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVL 243
                 PG +++L ++  F + L     +F+ + P     L  L  +  +    S  +    
Sbjct:   214 EGEIPGDIARLKQMIFFRIALN----KFNGVFPPPIYNLSSLIFLSITGNSFSGTLRP-- 267

Query:   244 DIFSAYGTYALVSLILSHCQ--ISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYL 301
             D  S      ++ + ++     I   L  +SSLR LD   N L G IPLS G++ +L  L
Sbjct:   268 DFGSLLPNLQILYMGINSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLL 327

Query:   302 DLSNN 306
              L+NN
Sbjct:   328 GLNNN 332

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 88/286 (30%), Positives = 129/286 (45%)

Query:    40 SWNIGDGDCCKWVGNFCNNLTGHILELNLENPFGY--------------LKYSDAEDDDH 85
             SW   + DCC W G  C+  +G ++EL+L   + Y              L+  D   +D 
Sbjct:    79 SWR-NNSDCCNWEGITCDTKSGEVIELDLSCSWLYGSFHSNSSLFRLQNLRVLDLTQNDL 137

Query:    86 YMRSKLVVGNLSNLQYLDLSWIDCRLHVDXXXXXXXXXXXEHIDLGQVHLGKASDCWIYS 145
                    +GNLS+L  L LS+      +             H+   Q   G+     I +
Sbjct:   138 DGEIPSSIGNLSHLTSLHLSYNQFLGLIPSSIENLSRLTSLHLSSNQFS-GQIPSS-IGN 195

Query:   146 LRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLV 205
             L HL  + LS NQF G+IPS++GNL++L  + L  N F    P  +  L  L+   L+  
Sbjct:   196 LSHLTSLELSSNQFSGQIPSSIGNLSNLTFLSLPSNDFFGQIPSSIGNLARLTYLYLSYN 255

Query:   206 SCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS 265
             +    F   IP+SF  L +L  +   S KLS ++       S      L +L+LSH Q +
Sbjct:   256 N----FVGEIPSSFGNLNQLIVLQVDSNKLSGNVP-----ISLLNLTRLSALLLSHNQFT 306

Query:   266 AAL-GKLSSLRNL-DF--SLNMLNGSIPLSLGQISHLEYLDLSNNK 307
               +   +S L NL DF  S N   G++P SL  I  L  LDLS+N+
Sbjct:   307 GTIPNNISLLSNLMDFEASNNAFTGTLPSSLFNIPPLIRLDLSDNQ 352

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2094613 RLP38 "receptor like protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 5.7e-18, P = 5.7e-18
 Identities = 95/301 (31%), Positives = 136/301 (45%)

Query:    16 CKESERGALLKLKRNLKDLSNCLAS-WNIGDGDCCKWVGNFCNNLTGHILELNLENPFGY 74
             C+  +R ALL+L++     S  L + WN G  DCC W G  C+ + G ++ L L     Y
Sbjct:    38 CRHDQRDALLELQKEFPIPSVILQNPWNKGI-DCCSWGGVTCDAILGEVISLKL-----Y 91

Query:    75 LKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDXXXXXXXXXXXEHIDLGQVH 134
                S A      ++S   +  L +L +LDLS  +C L  +            H+DL   H
Sbjct:    92 F-LSTASTS---LKSSSALFKLQHLTHLDLS--NCNLQGEIPSSIENLSHLTHLDLSTNH 145

Query:   135 LGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGW-LSK 193
             L       I +L  L +I L  N  +G IP++  NLT L  +DL  N  NFT     LS 
Sbjct:   146 LVGEVPASIGNLNQLEYIDLRGNHLRGNIPTSFANLTKLSLLDLHEN--NFTGGDIVLSN 203

Query:   194 LNELSSFLLNLVSCMVR-FHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTY 252
             L  L+  +L+L S   + F     +    L ++   + S V L    + +L I S     
Sbjct:   204 LTSLA--ILDLSSNHFKSFFSADLSGLHNLEQIFGNENSFVGLFP--ASLLKISS----- 254

Query:   253 ALVSLILSHCQISAAL--GKLSS---LRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNK 307
              L  + LS  Q    +  G  SS   L  LD S N   G +P SL ++ +LE LDLS+N 
Sbjct:   255 -LDKIQLSQNQFEGPIDFGNTSSSSRLTMLDISHNNFIGRVPSSLSKLVNLELLDLSHNN 313

Query:   308 F 308
             F
Sbjct:   314 F 314

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2096339 RLP30 "receptor like protein 30" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 86/302 (28%), Positives = 130/302 (43%)

Query:    16 CKESERGALLKLKRNL----KDLSNCLASWNIGDGDCCKWVGNFCNNLTGHILELNLENP 71
             C+  +R ALL+ K          S  L+SWN    DCC W G  C++ +G ++ L+L   
Sbjct:    37 CRHDQRDALLEFKHEFPVSESKPSPSLSSWN-KTSDCCFWEGVTCDDESGEVVSLDLS-- 93

Query:    72 FGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDXXXXXXXXXXXEHIDLG 131
               Y+  +++      ++    +  L  LQ L LS  DC L+ +            H+DL 
Sbjct:    94 --YVLLNNS------LKPTSGLFKLQQLQNLTLS--DCHLYGEVTSSLGNLSRLTHLDLS 143

Query:   132 QVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGW- 190
                L       +  L  L  ++LS N F G IP++  NLT L  +D+S NQF   +  + 
Sbjct:   144 SNQLTGEVLASVSKLNQLRDLLLSENSFSGNIPTSFTNLTKLSSLDISSNQFTLENFSFI 203

Query:   191 LSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYG 250
             L  L  LSS  LN+ S    F   +P+    L  L   D   V+ +  +           
Sbjct:   204 LPNLTSLSS--LNVASN--HFKSTLPSDMSGLHNLKYFD---VRENSFVGTFPTSLFTIP 256

Query:   251 TYALVSLILSHCQISAALGKLSSLRNL-DFSL--NMLNGSIPLSLGQISHLEYLDLSNNK 307
             +  +V L  +        G +SS   L D +L  N  +G IP  + +I  L  LDLS+N 
Sbjct:   257 SLQIVYLEGNQFMGPIKFGNISSSSRLWDLNLADNKFDGPIPEYISEIHSLIVLDLSHNN 316

Query:   308 FV 309
              V
Sbjct:   317 LV 318

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
 Identities = 88/314 (28%), Positives = 139/314 (44%)

Query:    11 KSYVGCKESERGALLKLKRNL----KD--LSNCLASW-NIGDGDCCKWVGNFCNNLTGHI 63
             + Y  C E ER ALL+LK+ +     D  L + L +W N    +CC+W G  CN  +G I
Sbjct:    22 RGYKCCIEKERKALLELKKYMISKTADWGLDSVLPTWTNDTKSNCCRWEGLKCNQTSGRI 81

Query:    64 LELNL-ENPF---GYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDXXXXX 119
             +EL++ +  F     L  S     +  +RS  + G + N ++  L   D    V+     
Sbjct:    82 IELSIGQTNFKESSLLNLSLLHPFEE-LRSLNLSGEIYN-EFNGL--FD---DVEGYESL 134

Query:   120 XXXXXXEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIP-STLGNLTSLKQIDL 178
                   E +DL       +   ++ +   L  + +  N   G +P   L NLT L+ +DL
Sbjct:   135 RRLRNLEILDLSSNSFNNSIFPFLNAATSLTTLFIQSNYIGGPLPIKELKNLTKLELLDL 194

Query:   179 SHNQFNFTSPGW--LSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLS 236
             S + +N + P +  L KL  L     N  S +V   +L       L  L  +  +   L 
Sbjct:   195 SRSGYNGSIPEFTHLEKLKALD-LSANDFSSLVELQELKV-----LTNLEVLGLAWNHLD 248

Query:   237 QDISQVLDIFSAYGTYALVSLILSHC--QISAALGKLSSLRNLDFSLNMLNGSIPLSLGQ 294
               I +  ++F        + L  ++   Q+   LG L+ LR LD S N L+G++P S   
Sbjct:   249 GPIPK--EVFCEMKNLRQLDLRGNYFEGQLPVCLGNLNKLRVLDLSSNQLSGNLPASFNS 306

Query:   295 ISHLEYLDLSNNKF 308
             +  LEYL LS+N F
Sbjct:   307 LESLEYLSLSDNNF 320

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2005507 ER "ERECTA" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 85/309 (27%), Positives = 137/309 (44%)

Query:     2 MVNISFCYGKSYVGCKESERGA-LLKLKRNLKDLSNCLASWNIG-DGDCCKWVGNFCNNL 59
             +V + F +  S V    SE GA LL++K++ KD++N L  W      D C W G  C N+
Sbjct:     7 IVLLGFLFCLSLVATVTSEEGATLLEIKKSFKDVNNVLYDWTTSPSSDYCVWRGVSCENV 66

Query:    60 TGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDXXXXX 119
             T +++ LNL         SD   D     +   +G+L +L  +DL     RL        
Sbjct:    67 TFNVVALNL---------SDLNLDGEISPA---IGDLKSLLSIDLR--GNRLSGQIPDEI 112

Query:   120 XXXXXXEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLS 179
                   +++DL    L       I  L+ L  ++L  NQ  G IPSTL  + +LK +DL+
Sbjct:   113 GDCSSLQNLDLSFNELSGDIPFSISKLKQLEQLILKNNQLIGPIPSTLSQIPNLKILDLA 172

Query:   180 HNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDI 239
              N+ +   P  L   NE+  +L       +R + L+      LC+LT + +  V+ +   
Sbjct:   173 QNKLSGEIPR-LIYWNEVLQYL------GLRGNNLVGNISPDLCQLTGLWYFDVRNNSLT 225

Query:   240 SQVLDIFSAYGTYALVSLILSHC--QISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISH 297
               + +       + ++ L  +    +I   +G L  +  L    N L+G IP  +G +  
Sbjct:   226 GSIPETIGNCTAFQVLDLSYNQLTGEIPFDIGFLQ-VATLSLQGNQLSGKIPSVIGLMQA 284

Query:   298 LEYLDLSNN 306
             L  LDLS N
Sbjct:   285 LAVLDLSGN 293

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0048281 "inflorescence morphogenesis" evidence=IMP

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0010103 "stomatal complex morphogenesis" evidence=RCA;IMP

GO:0001558 "regulation of cell growth" evidence=IGI;IMP

GO:0009965 "leaf morphogenesis" evidence=RCA;IMP

GO:0010148 "transpiration" evidence=IMP

GO:0030155 "regulation of cell adhesion" evidence=IMP

GO:0051302 "regulation of cell division" evidence=IGI;IMP

GO:0009664 "plant-type cell wall organization" evidence=IMP

GO:0008356 "asymmetric cell division" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=RCA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:2000027 "regulation of organ morphogenesis" evidence=IMP

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 3.5e-15, P = 3.5e-15
 Identities = 83/301 (27%), Positives = 128/301 (42%)

Query:    16 CKESERGALLKLKRNLKDLS-NCL--------ASWNIGDGDCCKWVGNFCNNLTGHILEL 66
             C   +  A+L+ K   + L  +C          SW   + DCC W G  C+   G ++EL
Sbjct:    30 CDPDQSDAILEFKNEFETLEESCFDSNIPLKTESWT-NNSDCCYWDGIKCDAKFGDVIEL 88

Query:    67 NLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDXXXXXXXXXXXE 126
             +L   F  L+      +    R    +  L  L  LDLS  D    +             
Sbjct:    89 DLS--FSCLR-GQLNSNSSLFR----LPQLRFLTTLDLSNNDFIGQIPSSLETLSNLTT- 140

Query:   127 HIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFT 186
              +DL + H        I +L HL F+  S+N F G+IPS+LG L+ L   +LS+N F+  
Sbjct:   141 -LDLSRNHFSGRIPSSIGNLSHLIFVDFSHNNFSGQIPSSLGYLSHLTSFNLSYNNFSGR 199

Query:   187 SPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIF 246
              P  +  L+ L++  L+  S    F   +P+S   L  LT +   +      I   L   
Sbjct:   200 VPSSIGNLSYLTTLRLSRNS----FFGELPSSLGSLFHLTDLILDTNHFVGKIPSSLGNL 255

Query:   247 SAYGTYALVSLILSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNN 306
             S   +  L        +I  +LG LS L +   S N + G IP S G ++ L+ L++ +N
Sbjct:   256 SHLTSIDLHKNNFVG-EIPFSLGNLSCLTSFILSDNNIVGEIPSSFGNLNQLDILNVKSN 314

Query:   307 K 307
             K
Sbjct:   315 K 315

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002835001 SubName- Full=Chromosome chr1 scaffold_136, whole genome shotgun sequence; (979 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	313
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-07
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	6e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.001
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 68.0 bits (166), Expect = 1e-12
 Identities = 52/167 (31%), Positives = 78/167 (46%), Gaps = 14/167 (8%)

Query: 146 LRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLV 205
           L  ++F+ +S N  QG+I S   ++ SL+ + L+ N+F    P         S  L NL 
Sbjct: 427 LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-----SKRLENLD 481

Query: 206 SCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSH---- 261
               +F   +P     L +L  +  S  KLS +I   L          LVSL LSH    
Sbjct: 482 LSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELS-----SCKKLVSLDLSHNQLS 536

Query: 262 CQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
            QI A+  ++  L  LD S N L+G IP +LG +  L  +++S+N  
Sbjct: 537 GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 67.6 bits (165), Expect = 2e-12
 Identities = 84/303 (27%), Positives = 124/303 (40%), Gaps = 28/303 (9%)

Query: 24  LLKLKRNLKDLSNCLASWNIGDGDCCKWVGNFCNN--------LTGHILELNLENPFGYL 75
           LL  K ++ D    L++WN    D C W G  CNN        L+G  +   + +    L
Sbjct: 34  LLSFKSSINDPLKYLSNWN-SSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRL 92

Query: 76  KYSDAEDDDHYMRSKLVVGNL----SNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLG 131
            Y    +  +   S  +  ++    S+L+YL+LS  +    +       S+  LE +DL 
Sbjct: 93  PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR----GSIPNLETLDLS 148

Query: 132 QVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWL 191
              L       I S   L  + L  N   GKIP++L NLTSL+ + L+ NQ     P  L
Sbjct: 149 NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL 208

Query: 192 SKLNELSSFLLNLVSCMVRFHQL---IPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSA 248
            ++  L    L        ++ L   IP     L  L  +D     L+  I   L     
Sbjct: 209 GQMKSLKWIYLG-------YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN 261

Query: 249 YGTYALVSLILSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
                L    LS   I  ++  L  L +LD S N L+G IP  + Q+ +LE L L +N F
Sbjct: 262 LQYLFLYQNKLSG-PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF 320

Query: 309 VTK 311
             K
Sbjct: 321 TGK 323

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.5 bits (139), Expect = 3e-09
 Identities = 29/61 (47%), Positives = 38/61 (62%)

Query: 143 IYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLL 202
           I  LRHL  I LS N  +G IP +LG++TSL+ +DLS+N FN + P  L +L  L    L
Sbjct: 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497

Query: 203 N 203
           N
Sbjct: 498 N 498

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 14/165 (8%)

Query: 148 HLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSC 207
           +LF ++L  N  +G+IP +LG   SL+++ L  N F+   P   +KL  L  F L++ + 
Sbjct: 381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL-PLVYF-LDISNN 438

Query: 208 MVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA 267
                  I +    +  L  +  +  K    +        ++G+  L +L LS  Q S A
Sbjct: 439 --NLQGRINSRKWDMPSLQMLSLARNKFFGGLPD------SFGSKRLENLDLSRNQFSGA 490

Query: 268 ----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
               LG LS L  L  S N L+G IP  L     L  LDLS+N+ 
Sbjct: 491 VPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 64/220 (29%), Positives = 103/220 (46%), Gaps = 15/220 (6%)

Query: 93  VGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152
           +G L++L +LDL + +  L     S L +L  L+++ L Q  L       I+SL+ L  +
Sbjct: 232 IGGLTSLNHLDLVYNN--LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL 289

Query: 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFH 212
            LS N   G+IP  +  L +L+ + L  N F    P  L+ L  L   +L L S   +F 
Sbjct: 290 DLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQ--VLQLWSN--KFS 345

Query: 213 QLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILS----HCQISAAL 268
             IP +  +   LT +D S+  L+ +I + L       +  L  LIL       +I  +L
Sbjct: 346 GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL-----CSSGNLFKLILFSNSLEGEIPKSL 400

Query: 269 GKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
           G   SLR +    N  +G +P    ++  + +LD+SNN  
Sbjct: 401 GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNL 440

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 45/139 (32%), Positives = 64/139 (46%), Gaps = 35/139 (25%)

Query: 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQ 213
           LS NQF G +P  LG+L+ L Q+ LS N+ +   P      +ELSS    LVS  +  +Q
Sbjct: 482 LSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP------DELSS-CKKLVSLDLSHNQ 534

Query: 214 L---IPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGK 270
           L   IP SF  +  L+ +D S  +LS +                         I   LG 
Sbjct: 535 LSGQIPASFSEMPVLSQLDLSQNQLSGE-------------------------IPKNLGN 569

Query: 271 LSSLRNLDFSLNMLNGSIP 289
           + SL  ++ S N L+GS+P
Sbjct: 570 VESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.2 bits (120), Expect = 7e-07
 Identities = 22/46 (47%), Positives = 29/46 (63%)

Query: 261 HCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNN 306
              I  +LG ++SL  LD S N  NGSIP SLGQ++ L  L+L+ N
Sbjct: 455 RGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 42.3 bits (100), Expect = 6e-06
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 19 SERGALLKLKRNLKDLSNC-LASWNIGDGDCCKWVGNFCN 57
           +R ALL  K +L    +  L+SWN    D C W G  C+
Sbjct: 3  DDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 21/46 (45%), Positives = 29/46 (63%)

Query: 263 QISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
            I   + KL  L++++ S N + G+IP SLG I+ LE LDLS N F
Sbjct: 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 2/95 (2%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIV 153
           G+LS L  L LS  + +L  +    LSS   L  +DL    L          +  L  + 
Sbjct: 496 GSLSELMQLKLS--ENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD 553

Query: 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSP 188
           LS NQ  G+IP  LGN+ SL Q+++SHN  + + P
Sbjct: 554 LSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 9/83 (10%)

Query: 215 IPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQ----ISAALGK 270
           IP    +L  L SI+ S   +  +I   L   ++     L  L LS+      I  +LG+
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS-----LEVLDLSYNSFNGSIPESLGQ 488

Query: 271 LSSLRNLDFSLNMLNGSIPLSLG 293
           L+SLR L+ + N L+G +P +LG
Sbjct: 489 LTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 18/38 (47%), Positives = 24/38 (63%)

Query: 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWL 191
           LSYN F G IP +LG LTSL+ ++L+ N  +   P  L
Sbjct: 473 LSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 18/59 (30%), Positives = 24/59 (40%)

Query: 125 LEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQF 183
           L+ +DL    L    D     L +L  + LS N      P     L SL+ +DLS N  
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 148 HLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLL 202
           +L  + LS N+           L +LK +DLS N     SP   S L  L S  L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDL 55

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 38.0 bits (88), Expect = 0.004
 Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQ 213
           LS N+ +  +PS L NL +LK +DLS N  +      L KL    S L NL     +   
Sbjct: 147 LSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-----DLPKLLSNLSNLNNLDLSGNKISD 200

Query: 214 LIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQI---SAALGK 270
            +P     L  L  +D S+  + + +S + ++ +      L  L LS+ ++     ++G 
Sbjct: 201 -LPPEIELLSALEELDLSNNSIIELLSSLSNLKN------LSGLELSNNKLEDLPESIGN 253

Query: 271 LSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
           LS+L  LD S N +  S   SLG +++L  LDLS N  
Sbjct: 254 LSNLETLDLSNNQI--SSISSLGSLTNLRELDLSGNSL 289

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	313
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.95
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.88
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.87
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.86
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.85
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.78
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.76
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.74
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.71
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.69
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.67
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.63
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.62
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.6
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.58
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.58
PLN03150	623	hypothetical protein; Provisional	99.57
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.51
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.45
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.23
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.17
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.16
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.15
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.15
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.13
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.07
PLN03150	623	hypothetical protein; Provisional	99.06
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.05
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.97
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.96
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.95
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.94
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.78
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.77
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.77
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.7
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.7
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.69
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.63
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.61
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.49
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.34
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.33
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.3
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.26
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.22
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.16
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.89
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.89
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.81
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.55
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.55
PRK15386	426	type III secretion protein GogB; Provisional	97.5
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.34
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.23
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.05
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.04
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.02
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.87
PRK15386	426	type III secretion protein GogB; Provisional	96.86
KOG4341	483	consensus F-box protein containing LRR [General fu	96.32
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.26
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.22
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.04
KOG4308	478	consensus LRR-containing protein [Function unknown	96.04
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.89
KOG4308	478	consensus LRR-containing protein [Function unknown	95.71
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.0
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.65
KOG4341	483	consensus F-box protein containing LRR [General fu	94.28
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.69
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.51
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.06
smart00370	26	LRR Leucine-rich repeats, outliers.	90.06
KOG1947	482	consensus Leucine rich repeat proteins, some prote	89.98
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	88.75
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.58
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	85.66
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	81.55

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=5.4e-36  Score=299.38  Aligned_cols=281  Identities=29%  Similarity=0.367  Sum_probs=178.2

Q ss_pred             CHHhHHHHHHhhhhcccCCCCCCCCCCCCCCCcccCceEecCCCCCEEEEecCC------------CCCCcceecCCCCc
Q 044980           17 KESERGALLKLKRNLKDLSNCLASWNIGDGDCCKWVGNFCNNLTGHILELNLEN------------PFGYLKYSDAEDDD   84 (313)
Q Consensus        17 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~c~~~~v~c~~~~~~v~~l~l~~------------~l~~L~~L~l~~n~   84 (313)
                      .+.|+.||++||+++.+|..++.+|+. ..+||.|.|+.|++ .++|+.+++++            .+++|+.|++++|.
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~-~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~  104 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWNS-SADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQ  104 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCCC-CCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCc
Confidence            568999999999999888888899986 77899999999975 57899999876            57899999999999


Q ss_pred             cccccccccc-CCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCC
Q 044980           85 HYMRSKLVVG-NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKI  163 (313)
Q Consensus        85 ~~~~~~~~l~-~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~  163 (313)
                      +.+.+|..+. ++++|++|++++|.+   .+.+| ...+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+
T Consensus       105 ~~~~ip~~~~~~l~~L~~L~Ls~n~l---~~~~p-~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~  180 (968)
T PLN00113        105 LSGPIPDDIFTTSSSLRYLNLSNNNF---TGSIP-RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI  180 (968)
T ss_pred             cCCcCChHHhccCCCCCEEECcCCcc---ccccC-ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccC
Confidence            9988888755 888999999998876   22233 123455555555555555555555555555555555555555455


Q ss_pred             CCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccccc----------------------cccccccccccc
Q 044980          164 PSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMV----------------------RFHQLIPTSFIR  221 (313)
Q Consensus       164 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~----------------------~~~~~~~~~~~~  221 (313)
                      |..+.++++|++|++++|.+++.+|..++++++|+.  +++++|..                      .+.+.+|..+++
T Consensus       181 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~--L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  258 (968)
T PLN00113        181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW--IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN  258 (968)
T ss_pred             ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE--EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhC
Confidence            555555555555555555555445555555555555  44444400                      333344444555


Q ss_pred             CCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCC
Q 044980          222 LCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISH  297 (313)
Q Consensus       222 ~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~  297 (313)
                      +++|+.|++++|.+.+.+|..+..+.     +|+.|++++|.+.+.    +..+++|+.|++++|.+.+.+|..+..+++
T Consensus       259 l~~L~~L~L~~n~l~~~~p~~l~~l~-----~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~  333 (968)
T PLN00113        259 LKNLQYLFLYQNKLSGPIPPSIFSLQ-----KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR  333 (968)
T ss_pred             CCCCCEEECcCCeeeccCchhHhhcc-----CcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCC
Confidence            55555555555555544444444444     555555555555443    445555666666666666556655666666


Q ss_pred             CCEeeCCCCcCcc
Q 044980          298 LEYLDLSNNKFVT  310 (313)
Q Consensus       298 L~~L~l~~n~l~~  310 (313)
                      |+.|++++|.++|
T Consensus       334 L~~L~L~~n~l~~  346 (968)
T PLN00113        334 LQVLQLWSNKFSG  346 (968)
T ss_pred             CCEEECcCCCCcC
Confidence            6666666666554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.95  E-value=6.9e-28  Score=241.20  Aligned_cols=229  Identities=30%  Similarity=0.372  Sum_probs=177.7

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCcc
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHL  149 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  149 (313)
                      .+++|+.|++++|.+.+.+|..++++++|++|++++|.+   .+.+| .+.++++|++|++++|.+.+..|..+..+.+|
T Consensus       138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l---~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  214 (968)
T PLN00113        138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL---VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL  214 (968)
T ss_pred             ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc---cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence            456677777777777777777788888888888888875   33444 57778888888888888887777778888888


Q ss_pred             CeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEE
Q 044980          150 FFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSID  229 (313)
Q Consensus       150 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~  229 (313)
                      ++|++++|.+.+.+|..+.++++|++|++++|.+++.+|..++++++|+.  |++++|  .+.+.+|..+.++++|++|+
T Consensus       215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~--L~L~~n--~l~~~~p~~l~~l~~L~~L~  290 (968)
T PLN00113        215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQY--LFLYQN--KLSGPIPPSIFSLQKLISLD  290 (968)
T ss_pred             cEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCE--EECcCC--eeeccCchhHhhccCcCEEE
Confidence            88888888888788888888888888888888888888888888888888  787777  56666777788888888888


Q ss_pred             ccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCC
Q 044980          230 FSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSN  305 (313)
Q Consensus       230 l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~  305 (313)
                      +++|.+.+.+|..+..++     +|+.|++++|.+++.    +..+++|+.|++++|.+.+.+|..+..+++|+.|++++
T Consensus       291 Ls~n~l~~~~p~~~~~l~-----~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~  365 (968)
T PLN00113        291 LSDNSLSGEIPELVIQLQ-----NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST  365 (968)
T ss_pred             CcCCeeccCCChhHcCCC-----CCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCC
Confidence            888888877777777776     778888877777654    56677777777777777777777777777777777777


Q ss_pred             CcCccc
Q 044980          306 NKFVTK  311 (313)
Q Consensus       306 n~l~~~  311 (313)
                      |+++|.
T Consensus       366 n~l~~~  371 (968)
T PLN00113        366 NNLTGE  371 (968)
T ss_pred             CeeEee
Confidence            776653

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.88  E-value=2.8e-24  Score=190.96  Aligned_cols=240  Identities=23%  Similarity=0.251  Sum_probs=179.6

Q ss_pred             CCCEEEEecCC------------CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCE
Q 044980           60 TGHILELNLEN------------PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEH  127 (313)
Q Consensus        60 ~~~v~~l~l~~------------~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~  127 (313)
                      .|+++.+++..            -++.|+.|||+.|.++..-.+.|..-.++++|+|++|.++  .-....|..+..|.+
T Consensus       124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It--~l~~~~F~~lnsL~t  201 (873)
T KOG4194|consen  124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRIT--TLETGHFDSLNSLLT  201 (873)
T ss_pred             ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccc--ccccccccccchhee
Confidence            46788887765            3567888888888877654455666677888888888762  222234556666777


Q ss_pred             EEcCCccCCCCCchhhhhcCccCeeeccCcccC------------------------cCCCCCCCCCCCCCEEEccCCCC
Q 044980          128 IDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQ------------------------GKIPSTLGNLTSLKQIDLSHNQF  183 (313)
Q Consensus       128 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~------------------------~~~~~~~~~l~~L~~L~l~~n~l  183 (313)
                      |.++.|+++...+..|+.+++|+.|+|..|.+.                        ..-...|..+.++++|+|..|++
T Consensus       202 lkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l  281 (873)
T KOG4194|consen  202 LKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL  281 (873)
T ss_pred             eecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh
Confidence            777777777666666666666666666666554                        22223455566777777777777


Q ss_pred             CCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccc
Q 044980          184 NFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQ  263 (313)
Q Consensus       184 ~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~  263 (313)
                      +..-...+.+++.|+.  |++++|  .+..+-++.|...++|+.|+|++|.++...+..+..+.     .|+.|+|++|.
T Consensus       282 ~~vn~g~lfgLt~L~~--L~lS~N--aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~-----~Le~LnLs~Ns  352 (873)
T KOG4194|consen  282 QAVNEGWLFGLTSLEQ--LDLSYN--AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS-----QLEELNLSHNS  352 (873)
T ss_pred             hhhhcccccccchhhh--hccchh--hhheeecchhhhcccceeEeccccccccCChhHHHHHH-----Hhhhhcccccc
Confidence            6555566778888888  888888  77777888898899999999999999988888888888     89999999999


Q ss_pred             cccc----ccCCCCCCEEEccCCccccccCc---cccCCCCCCEeeCCCCcCcc
Q 044980          264 ISAA----LGKLSSLRNLDFSLNMLNGSIPL---SLGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       264 l~~~----~~~~~~L~~L~l~~n~l~~~ip~---~l~~l~~L~~L~l~~n~l~~  310 (313)
                      +...    |..+++|++|||++|.++..|-+   .|.++++|+.|++.+|++..
T Consensus       353 i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~  406 (873)
T KOG4194|consen  353 IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS  406 (873)
T ss_pred             hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeee
Confidence            8755    88899999999999998865533   56779999999999999864

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.87  E-value=1.3e-23  Score=186.63  Aligned_cols=226  Identities=20%  Similarity=0.178  Sum_probs=99.1

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCC----------------------CCCCchhhccCCCCCEE
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRL----------------------HVDSLSWLSSLLLLEHI  128 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~----------------------~~~~~~~~~~l~~L~~L  128 (313)
                      ++++|+.+++..|.++ .+|...+...+|+.|+|.+|.++.                      .....+.|..-.++++|
T Consensus       100 nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L  178 (873)
T KOG4194|consen  100 NLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKL  178 (873)
T ss_pred             cCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEE
Confidence            5666666666666655 244433333445555555555411                      11112233333445555


Q ss_pred             EcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccc
Q 044980          129 DLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCM  208 (313)
Q Consensus       129 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~  208 (313)
                      ++++|+|+......|..+.+|.+|.|+.|.++..-+..|.++++|+.|+|..|++.-.--..|.++++|+.  +.+..| 
T Consensus       179 ~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~n--lklqrN-  255 (873)
T KOG4194|consen  179 NLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQN--LKLQRN-  255 (873)
T ss_pred             eeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhh--hhhhhc-
Confidence            55555554444444445555555555555555222233444555555555555543211123444444444  444444 


Q ss_pred             cccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCcc
Q 044980          209 VRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNML  284 (313)
Q Consensus       209 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l  284 (313)
                       .+..+-...|..+.++++|+|+.|++...-...+..+.     +|+.|++|+|.|...    +.-.++|++|+|++|+|
T Consensus       256 -~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt-----~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i  329 (873)
T KOG4194|consen  256 -DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT-----SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI  329 (873)
T ss_pred             -CcccccCcceeeecccceeecccchhhhhhcccccccc-----hhhhhccchhhhheeecchhhhcccceeEecccccc
Confidence             33333333344444444444444444433333333333     444444444444332    33334444444444444


Q ss_pred             ccccCccccCCCCCCEeeCCCC
Q 044980          285 NGSIPLSLGQISHLEYLDLSNN  306 (313)
Q Consensus       285 ~~~ip~~l~~l~~L~~L~l~~n  306 (313)
                      +.--+.+|..+..|++|+|++|
T Consensus       330 ~~l~~~sf~~L~~Le~LnLs~N  351 (873)
T KOG4194|consen  330 TRLDEGSFRVLSQLEELNLSHN  351 (873)
T ss_pred             ccCChhHHHHHHHhhhhccccc
Confidence            4333333333333333333333

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.86  E-value=1.6e-23  Score=187.81  Aligned_cols=224  Identities=25%  Similarity=0.293  Sum_probs=175.5

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCcc
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHL  149 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  149 (313)
                      .+.+|+.|.+++|++.. +.-.+..++.|+.+++..|++  ....+| .+..+..|++||+++|++... |..+....++
T Consensus        53 ~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R~N~L--KnsGiP~diF~l~dLt~lDLShNqL~Ev-P~~LE~AKn~  128 (1255)
T KOG0444|consen   53 RLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVIVRDNNL--KNSGIPTDIFRLKDLTILDLSHNQLREV-PTNLEYAKNS  128 (1255)
T ss_pred             HHhhhhhhhhhhhhhHh-hhhhhccchhhHHHhhhcccc--ccCCCCchhcccccceeeecchhhhhhc-chhhhhhcCc
Confidence            56677778888877653 233466777888888888876  333444 677888888888888888754 6667777888


Q ss_pred             CeeeccCcccCcCCCCC-CCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccccc-------------------
Q 044980          150 FFIVLSYNQFQGKIPST-LGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMV-------------------  209 (313)
Q Consensus       150 ~~L~L~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~-------------------  209 (313)
                      -+|+|++|+|. .+|.. +-+++.|-+|||++|++. .+|..+..+..|+.  |.+++|..                   
T Consensus       129 iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~Lqt--L~Ls~NPL~hfQLrQLPsmtsL~vLhm  204 (1255)
T KOG0444|consen  129 IVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQT--LKLSNNPLNHFQLRQLPSMTSLSVLHM  204 (1255)
T ss_pred             EEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhh--hhcCCChhhHHHHhcCccchhhhhhhc
Confidence            88888888887 55544 457788888888888876 56666777777777  77777610                   


Q ss_pred             ----ccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc---ccCCCCCCEEEccCC
Q 044980          210 ----RFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA---LGKLSSLRNLDFSLN  282 (313)
Q Consensus       210 ----~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~~~L~~L~l~~n  282 (313)
                          +....+|.++..+.+|..++++.|++. .+|+.+..++     +|+.|+||+|+|+..   ...-.+|+.|++|.|
T Consensus       205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~-----~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN  278 (1255)
T KOG0444|consen  205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLR-----NLRRLNLSGNKITELNMTEGEWENLETLNLSRN  278 (1255)
T ss_pred             ccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhh-----hhheeccCcCceeeeeccHHHHhhhhhhccccc
Confidence                001128888999999999999999998 6789999999     999999999999877   556678999999999


Q ss_pred             ccccccCccccCCCCCCEeeCCCCcCc
Q 044980          283 MLNGSIPLSLGQISHLEYLDLSNNKFV  309 (313)
Q Consensus       283 ~l~~~ip~~l~~l~~L~~L~l~~n~l~  309 (313)
                      +++ .+|..++.+++|+.|.+.+|+++
T Consensus       279 QLt-~LP~avcKL~kL~kLy~n~NkL~  304 (1255)
T KOG0444|consen  279 QLT-VLPDAVCKLTKLTKLYANNNKLT  304 (1255)
T ss_pred             hhc-cchHHHhhhHHHHHHHhccCccc
Confidence            999 89999999999999999999886

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.85  E-value=9.3e-23  Score=174.05  Aligned_cols=222  Identities=26%  Similarity=0.339  Sum_probs=148.1

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF  150 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  150 (313)
                      +++.|+.+|+..|-++ .+|+.++.+..|..|++++|++    ..+|.|.+|..|++++++.|.+.-...+..+.+.++.
T Consensus       181 ~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki----~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~  255 (565)
T KOG0472|consen  181 AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKI----RFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLL  255 (565)
T ss_pred             HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccc----ccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccce
Confidence            4566777777666554 4677777788888888888876    3344555555555555555555433222333555555


Q ss_pred             eeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccc-----------------------
Q 044980          151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSC-----------------------  207 (313)
Q Consensus       151 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n-----------------------  207 (313)
                      +|++..|++. +.|..+.-+.+|+.||+++|.++ ..|..++++ .|+.  +-+.+|                       
T Consensus       256 vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~--L~leGNPlrTiRr~ii~~gT~~vLKyLrs  330 (565)
T KOG0472|consen  256 VLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKF--LALEGNPLRTIRREIISKGTQEVLKYLRS  330 (565)
T ss_pred             eeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeee--hhhcCCchHHHHHHHHcccHHHHHHHHHH
Confidence            5555555555 45555555555555555555555 344445555 4444  444444                       


Q ss_pred             --------------------------------------------------------------------------------
Q 044980          208 --------------------------------------------------------------------------------  207 (313)
Q Consensus       208 --------------------------------------------------------------------------------  207 (313)
                                                                                                      
T Consensus       331 ~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~l  410 (565)
T KOG0472|consen  331 KIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVEL  410 (565)
T ss_pred             hhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHH
Confidence                                                                                            


Q ss_pred             ---------ccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc-----------
Q 044980          208 ---------MVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA-----------  267 (313)
Q Consensus       208 ---------~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~-----------  267 (313)
                               .....+.+|..+..+++|+.|++++|-+. .+|..++.+.     .|+.++++.|+|...           
T Consensus       411 kelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv-----~Lq~LnlS~NrFr~lP~~~y~lq~lE  484 (565)
T KOG0472|consen  411 KELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLV-----RLQTLNLSFNRFRMLPECLYELQTLE  484 (565)
T ss_pred             HHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhh-----hhheecccccccccchHHHhhHHHHH
Confidence                     01111226677788888999999888876 4677777777     899999999876532           


Q ss_pred             ----------------ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCc
Q 044980          268 ----------------LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFV  309 (313)
Q Consensus       268 ----------------~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~  309 (313)
                                      +.++.+|..||+.+|.+. .||..++++.+|++|++++|.|.
T Consensus       485 tllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  485 TLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence                            566788999999999999 99999999999999999999987

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.78  E-value=6.2e-21  Score=171.27  Aligned_cols=219  Identities=23%  Similarity=0.309  Sum_probs=113.2

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch--hhccCCCCCEEEcCCccCCCCCchhhhhcCc
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS--WLSSLLLLEHIDLGQVHLGKASDCWIYSLRH  148 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  148 (313)
                      ++..|+.||+++|++. .+|..+.+-+++.+|+|++|+|    ..+|  -+-++..|-.||+++|++....| .+..+.+
T Consensus       101 ~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~I----etIPn~lfinLtDLLfLDLS~NrLe~LPP-Q~RRL~~  174 (1255)
T KOG0444|consen  101 RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNI----ETIPNSLFINLTDLLFLDLSNNRLEMLPP-QIRRLSM  174 (1255)
T ss_pred             ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCcc----ccCCchHHHhhHhHhhhccccchhhhcCH-HHHHHhh
Confidence            5667777777777765 3666666667777777777775    2333  35566666666667666655433 3556666


Q ss_pred             cCeeeccCcccCc-------------------------CCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccc
Q 044980          149 LFFIVLSYNQFQG-------------------------KIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLN  203 (313)
Q Consensus       149 L~~L~L~~n~~~~-------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~  203 (313)
                      |++|.|++|++..                         .+|.++..+.+|..+|++.|.+. .+|..+.++++|+.  |+
T Consensus       175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~Lrr--LN  251 (1255)
T KOG0444|consen  175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRR--LN  251 (1255)
T ss_pred             hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhhe--ec
Confidence            6666666665431                         24444444445555555555544 44444555555555  55


Q ss_pred             ccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc-----ccCCCCCCEEE
Q 044980          204 LVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA-----LGKLSSLRNLD  278 (313)
Q Consensus       204 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~-----~~~~~~L~~L~  278 (313)
                      +++|  .+.. +....+.+.+|++|+++.|+++ .+|..+..++     +|+.|.+..|+++-.     ++.+.+|+++.
T Consensus       252 LS~N--~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~-----kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~  322 (1255)
T KOG0444|consen  252 LSGN--KITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLT-----KLTKLYANNNKLTFEGIPSGIGKLIQLEVFH  322 (1255)
T ss_pred             cCcC--ceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhH-----HHHHHHhccCcccccCCccchhhhhhhHHHH
Confidence            5554  2211 1112222333444444444443 2344444444     444444444443211     44444455555


Q ss_pred             ccCCccccccCccccCCCCCCEeeCCCCcC
Q 044980          279 FSLNMLNGSIPLSLGQISHLEYLDLSNNKF  308 (313)
Q Consensus       279 l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l  308 (313)
                      .++|.+. -+|+.++.+..|+.|.|++|++
T Consensus       323 aanN~LE-lVPEglcRC~kL~kL~L~~NrL  351 (1255)
T KOG0444|consen  323 AANNKLE-LVPEGLCRCVKLQKLKLDHNRL  351 (1255)
T ss_pred             hhccccc-cCchhhhhhHHHHHhcccccce
Confidence            5555544 5555555555555555555544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.76  E-value=3.3e-21  Score=164.65  Aligned_cols=223  Identities=24%  Similarity=0.299  Sum_probs=146.5

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF  150 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  150 (313)
                      ++..++++++.+|++. ..|++++.+..++.++.++|++   ....+.+..+..|..+++++|.+.... ..+..+-.|+
T Consensus        66 nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~l---s~lp~~i~s~~~l~~l~~s~n~~~el~-~~i~~~~~l~  140 (565)
T KOG0472|consen   66 NLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKL---SELPEQIGSLISLVKLDCSSNELKELP-DSIGRLLDLE  140 (565)
T ss_pred             cccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchH---hhccHHHhhhhhhhhhhccccceeecC-chHHHHhhhh
Confidence            6778888888888876 4677788888888888888885   333346777788888888888877653 3467777788


Q ss_pred             eeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEc
Q 044980          151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDF  230 (313)
Q Consensus       151 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l  230 (313)
                      .++..+|+++ ..|+.+.++.++..+++.+|++....|..+. ++.|++  ++...|   +-+.+|+.++.+.+|+.|++
T Consensus       141 dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~--ld~~~N---~L~tlP~~lg~l~~L~~LyL  213 (565)
T KOG0472|consen  141 DLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKH--LDCNSN---LLETLPPELGGLESLELLYL  213 (565)
T ss_pred             hhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHh--cccchh---hhhcCChhhcchhhhHHHHh
Confidence            8888888887 6777777777777888888877744444443 777777  766665   44457777777777777777


Q ss_pred             cCCCCCCCcchhhhhhc----------------cc---cccCccEEEccccccccc---ccCCCCCCEEEccCCcccccc
Q 044980          231 SSVKLSQDISQVLDIFS----------------AY---GTYALVSLILSHCQISAA---LGKLSSLRNLDFSLNMLNGSI  288 (313)
Q Consensus       231 ~~n~l~~~~~~~l~~~~----------------~~---~~~~L~~L~Ls~n~l~~~---~~~~~~L~~L~l~~n~l~~~i  288 (313)
                      ..|++.. +| .|..+.                +.   +.+++..||+..|++...   +.-+.+|+.||+++|.|+ .+
T Consensus       214 ~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is-~L  290 (565)
T KOG0472|consen  214 RRNKIRF-LP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDIS-SL  290 (565)
T ss_pred             hhccccc-CC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccc-cC
Confidence            7777763 33 222222                00   111455555555555444   444455555566666555 45


Q ss_pred             CccccCCCCCCEeeCCCCcCc
Q 044980          289 PLSLGQISHLEYLDLSNNKFV  309 (313)
Q Consensus       289 p~~l~~l~~L~~L~l~~n~l~  309 (313)
                      |.+++++ +|+.|-+.||.+.
T Consensus       291 p~sLgnl-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  291 PYSLGNL-HLKFLALEGNPLR  310 (565)
T ss_pred             Ccccccc-eeeehhhcCCchH
Confidence            5555555 5555555555543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=3e-17  Score=156.94  Aligned_cols=113  Identities=15%  Similarity=0.133  Sum_probs=57.3

Q ss_pred             cceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeee
Q 044980           75 LKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIV  153 (313)
Q Consensus        75 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  153 (313)
                      |+.|++++|.++. +|..+.  ++|++|++++|.+.    .+| .+  ...|+.|++++|.+.. +|..+.  .+|++|+
T Consensus       201 L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt----sLP~~l--~~~L~~L~Ls~N~L~~-LP~~l~--s~L~~L~  268 (754)
T PRK15370        201 ITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT----SIPATL--PDTIQEMELSINRITE-LPERLP--SALQSLD  268 (754)
T ss_pred             CcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc----cCChhh--hccccEEECcCCccCc-CChhHh--CCCCEEE
Confidence            4555555555542 333332  35566666655541    222 11  1356666666666653 333222  3567777


Q ss_pred             ccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccc
Q 044980          154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSC  207 (313)
Q Consensus       154 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n  207 (313)
                      +++|+++ .+|..+.  ++|+.|++++|.+++ +|..+.  ..|+.  |++++|
T Consensus       269 Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~--L~Ls~N  314 (754)
T PRK15370        269 LFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITH--LNVQSN  314 (754)
T ss_pred             CcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHH--HHhcCC
Confidence            7777766 4555443  467777777777663 333221  23444  455554

>PLN03210 Resistant to P

Probab=99.74  E-value=6.1e-17  Score=163.82  Aligned_cols=219  Identities=21%  Similarity=0.186  Sum_probs=132.5

Q ss_pred             CCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCe
Q 044980           72 FGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFF  151 (313)
Q Consensus        72 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  151 (313)
                      ..+|+.|++.++.+. .++..+..+++|++|+|+++..   ...+|.+..+++|++|++++|.....+|..+..+++|+.
T Consensus       610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~---l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~  685 (1153)
T PLN03210        610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKN---LKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLED  685 (1153)
T ss_pred             ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCC---cCcCCccccCCcccEEEecCCCCccccchhhhccCCCCE
Confidence            456777777777665 3566667778888888876652   345566777788888888877665666777777888888


Q ss_pred             eeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhh-------------------cCc-----------------
Q 044980          152 IVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLS-------------------KLN-----------------  195 (313)
Q Consensus       152 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-------------------~l~-----------------  195 (313)
                      |++++|.....+|..+ ++++|+.|++++|...+.+|....                   .++                 
T Consensus       686 L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~  764 (1153)
T PLN03210        686 LDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWE  764 (1153)
T ss_pred             EeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccc
Confidence            8888765444666544 566666666666643333322110                   111                 


Q ss_pred             --------------ccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccc
Q 044980          196 --------------ELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSH  261 (313)
Q Consensus       196 --------------~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~  261 (313)
                                    +|+.  |++++|  .....+|..++++++|+.|++++|...+.+|..+ .++     +|+.|++++
T Consensus       765 ~~~~l~~~~~~~~~sL~~--L~Ls~n--~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~-----sL~~L~Ls~  834 (1153)
T PLN03210        765 RVQPLTPLMTMLSPSLTR--LFLSDI--PSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLE-----SLESLDLSG  834 (1153)
T ss_pred             cccccchhhhhccccchh--eeCCCC--CCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Ccc-----ccCEEECCC
Confidence                          2333  333333  2223356667777777777777665444455433 233     566666666


Q ss_pred             cccccc-ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCC
Q 044980          262 CQISAA-LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNN  306 (313)
Q Consensus       262 n~l~~~-~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n  306 (313)
                      |..-.. .....+|+.|++++|.+. .+|.++..+++|+.|++++|
T Consensus       835 c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C  879 (1153)
T PLN03210        835 CSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC  879 (1153)
T ss_pred             CCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence            543222 122346777777777776 67777777777777777663

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.71  E-value=8.7e-17  Score=153.16  Aligned_cols=203  Identities=19%  Similarity=0.133  Sum_probs=123.5

Q ss_pred             CCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCe
Q 044980           72 FGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFF  151 (313)
Q Consensus        72 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  151 (313)
                      .++|+.|++++|.++. +|..   .+.|++|++++|.+.    .+|.  -...|+.|++++|.++.. |.   ..++|++
T Consensus       241 p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~----~Lp~--lp~~L~~L~Ls~N~Lt~L-P~---~p~~L~~  306 (788)
T PRK15387        241 PPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLT----HLPA--LPSGLCKLWIFGNQLTSL-PV---LPPGLQE  306 (788)
T ss_pred             CCCCcEEEecCCccCc-ccCc---ccccceeeccCCchh----hhhh--chhhcCEEECcCCccccc-cc---cccccce
Confidence            4566667776666653 3421   234555555555531    1111  012344455555544432 11   2234555


Q ss_pred             eeccCcccCcCCCCCCC-----------------CCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccc
Q 044980          152 IVLSYNQFQGKIPSTLG-----------------NLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQL  214 (313)
Q Consensus       152 L~L~~n~~~~~~~~~~~-----------------~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~  214 (313)
                      |++++|++++ +|....                 ...+|++|++++|++++ +|..   ..+|+.  |++++|  .+.. 
T Consensus       307 LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~--L~Ls~N--~L~~-  376 (788)
T PRK15387        307 LSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-LPTL---PSELYK--LWAYNN--RLTS-  376 (788)
T ss_pred             eECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccCC-CCCC---Ccccce--ehhhcc--cccc-
Confidence            5555555542 222110                 01357777777777763 4432   245566  666666  3332 


Q ss_pred             cccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEcccccccccccCCCCCCEEEccCCccccccCccccC
Q 044980          215 IPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQ  294 (313)
Q Consensus       215 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~L~~L~l~~n~l~~~ip~~l~~  294 (313)
                      +|..   ..+|+.|++++|.+.+ +|..   ..     +|+.|++++|++++......+|+.|++++|+++ .+|..+..
T Consensus       377 LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s-----~L~~LdLS~N~LssIP~l~~~L~~L~Ls~NqLt-~LP~sl~~  443 (788)
T PRK15387        377 LPAL---PSGLKELIVSGNRLTS-LPVL---PS-----ELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIH  443 (788)
T ss_pred             Cccc---ccccceEEecCCcccC-CCCc---cc-----CCCEEEccCCcCCCCCcchhhhhhhhhccCccc-ccChHHhh
Confidence            4542   2468889999998885 4432   23     789999999998876333457899999999999 89999999


Q ss_pred             CCCCCEeeCCCCcCccc
Q 044980          295 ISHLEYLDLSNNKFVTK  311 (313)
Q Consensus       295 l~~L~~L~l~~n~l~~~  311 (313)
                      +++|+.|++++|+|+|.
T Consensus       444 L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        444 LSSETTVNLEGNPLSER  460 (788)
T ss_pred             ccCCCeEECCCCCCCch
Confidence            99999999999999975

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=4.8e-18  Score=149.44  Aligned_cols=210  Identities=24%  Similarity=0.232  Sum_probs=88.4

Q ss_pred             cccCCCCCcEeeccCCCCCCCCCCchhhccCC---CCCEEEcCCccCCCCC----chhhhhc-CccCeeeccCcccCcC-
Q 044980           92 VVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLL---LLEHIDLGQVHLGKAS----DCWIYSL-RHLFFIVLSYNQFQGK-  162 (313)
Q Consensus        92 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~---~L~~L~l~~n~l~~~~----~~~~~~l-~~L~~L~L~~n~~~~~-  162 (313)
                      .+.++++|++|++++|.+.  ....+.+..+.   +|++|++++|.+.+..    ...+..+ ++|++|++++|.+++. 
T Consensus        76 ~l~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  153 (319)
T cd00116          76 GLTKGCGLQELDLSDNALG--PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS  153 (319)
T ss_pred             HHHhcCceeEEEccCCCCC--hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence            3444555555555555531  11111222222   2555555555554211    1122333 4455555555555421 


Q ss_pred             ---CCCCCCCCCCCCEEEccCCCCCCC----CchhhhcCccccccccccccccccccc----ccccccccCCCcCEEEcc
Q 044980          163 ---IPSTLGNLTSLKQIDLSHNQFNFT----SPGWLSKLNELSSFLLNLVSCMVRFHQ----LIPTSFIRLCKLTSIDFS  231 (313)
Q Consensus       163 ---~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~~~L~l~~n~~~~~~----~~~~~~~~~~~L~~L~l~  231 (313)
                         ++..+..+++|++|++++|.+++.    ++..+...++|+.  +++++|  .+..    .+...+..+++|++|+++
T Consensus       154 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~--L~L~~n--~i~~~~~~~l~~~~~~~~~L~~L~ls  229 (319)
T cd00116         154 CEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEV--LDLNNN--GLTDEGASALAETLASLKSLEVLNLG  229 (319)
T ss_pred             HHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCE--EeccCC--ccChHHHHHHHHHhcccCCCCEEecC
Confidence               122333444555555555555422    1122333345555  555544  2211    122333444555555555


Q ss_pred             CCCCCCCcchhhhhhccccccCccEEEccccccccc--------ccCCCCCCEEEccCCccccc----cCccccCC-CCC
Q 044980          232 SVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--------LGKLSSLRNLDFSLNMLNGS----IPLSLGQI-SHL  298 (313)
Q Consensus       232 ~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--------~~~~~~L~~L~l~~n~l~~~----ip~~l~~l-~~L  298 (313)
                      +|.+.+.....+........+.|+.|++++|.+++.        +..+++|+++++++|.+...    +...+... +.+
T Consensus       230 ~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~  309 (319)
T cd00116         230 DNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNEL  309 (319)
T ss_pred             CCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCch
Confidence            555544222222211000111455555555555421        33334555555555555532    22223333 455


Q ss_pred             CEeeCCCCc
Q 044980          299 EYLDLSNNK  307 (313)
Q Consensus       299 ~~L~l~~n~  307 (313)
                      +++++.+|.
T Consensus       310 ~~~~~~~~~  318 (319)
T cd00116         310 ESLWVKDDS  318 (319)
T ss_pred             hhcccCCCC
Confidence            555555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=5.7e-18  Score=149.00  Aligned_cols=236  Identities=22%  Similarity=0.183  Sum_probs=172.0

Q ss_pred             CCCCcceecCCCCccccc----ccccccCCCCCcEeeccCCCCCCCCCC---c-hhhccCCCCCEEEcCCccCCCCCchh
Q 044980           71 PFGYLKYSDAEDDDHYMR----SKLVVGNLSNLQYLDLSWIDCRLHVDS---L-SWLSSLLLLEHIDLGQVHLGKASDCW  142 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~L~~n~~~~~~~~---~-~~~~~l~~L~~L~l~~n~l~~~~~~~  142 (313)
                      .+.+|+.++++++.++..    ++..+...+.|++++++++.+......   + ..+..+++|+.|++++|.+.+..+..
T Consensus        21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  100 (319)
T cd00116          21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV  100 (319)
T ss_pred             HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence            345588888888887543    555567788899999999875210111   1 24677889999999999998766666


Q ss_pred             hhhcCc---cCeeeccCcccCc----CCCCCCCCC-CCCCEEEccCCCCCCC----CchhhhcCcccccccccccccccc
Q 044980          143 IYSLRH---LFFIVLSYNQFQG----KIPSTLGNL-TSLKQIDLSHNQFNFT----SPGWLSKLNELSSFLLNLVSCMVR  210 (313)
Q Consensus       143 ~~~l~~---L~~L~L~~n~~~~----~~~~~~~~l-~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~~~L~l~~n~~~  210 (313)
                      +..+.+   |++|++++|.+.+    .+...+..+ ++|+.|++++|.+++.    ++..+..++.|++  +++++|  .
T Consensus       101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~--L~l~~n--~  176 (319)
T cd00116         101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKE--LNLANN--G  176 (319)
T ss_pred             HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCE--EECcCC--C
Confidence            766666   9999999999873    223345566 8999999999999843    3345666788999  888888  4


Q ss_pred             ccc----ccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc----c-----cCCCCCCEE
Q 044980          211 FHQ----LIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----L-----GKLSSLRNL  277 (313)
Q Consensus       211 ~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~-----~~~~~L~~L  277 (313)
                      +.+    .++..+..+++|++|++++|.+.+.....+.... ..+++|+.|++++|.+++.    +     ...+.|++|
T Consensus       177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~-~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L  255 (319)
T cd00116         177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL-ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTL  255 (319)
T ss_pred             CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh-cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEE
Confidence            442    2444556667999999999999865443332221 1223899999999999864    1     124799999


Q ss_pred             EccCCcccc----ccCccccCCCCCCEeeCCCCcCccc
Q 044980          278 DFSLNMLNG----SIPLSLGQISHLEYLDLSNNKFVTK  311 (313)
Q Consensus       278 ~l~~n~l~~----~ip~~l~~l~~L~~L~l~~n~l~~~  311 (313)
                      ++++|.+++    .+...+..+++|+++++++|.++.+
T Consensus       256 ~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         256 SLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             EccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            999999972    3445566678999999999999753

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=99.69  E-value=5.9e-16  Score=156.72  Aligned_cols=215  Identities=22%  Similarity=0.241  Sum_probs=141.0

Q ss_pred             CCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCee
Q 044980           73 GYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI  152 (313)
Q Consensus        73 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  152 (313)
                      ++|+.|++++|.....+|..++++++|+.|++++|..   ...+|...++++|+.|++++|.....+|.   ...+|++|
T Consensus       657 ~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~---L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L  730 (1153)
T PLN03210        657 TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN---LEILPTGINLKSLYRLNLSGCSRLKSFPD---ISTNISWL  730 (1153)
T ss_pred             CcccEEEecCCCCccccchhhhccCCCCEEeCCCCCC---cCccCCcCCCCCCCEEeCCCCCCcccccc---ccCCcCee
Confidence            4444455544444444455555555555555554431   12233222445555555555533332222   23345666


Q ss_pred             eccCcccCcCCCCCC------------------------------CCCCCCCEEEccCCCCCCCCchhhhcCcccccccc
Q 044980          153 VLSYNQFQGKIPSTL------------------------------GNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLL  202 (313)
Q Consensus       153 ~L~~n~~~~~~~~~~------------------------------~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L  202 (313)
                      ++++|.+. .+|..+                              ...++|+.|++++|...+.+|..++++++|+.  |
T Consensus       731 ~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~--L  807 (1153)
T PLN03210        731 DLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEH--L  807 (1153)
T ss_pred             ecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCE--E
Confidence            66666654 344321                              11246888889888877789999999999999  9


Q ss_pred             cccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc---ccCCCCCCEEEc
Q 044980          203 NLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA---LGKLSSLRNLDF  279 (313)
Q Consensus       203 ~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~~~L~~L~l  279 (313)
                      ++++|  .....+|..+ ++++|+.|++++|.....+|..   ..     +|+.|+|++|.++..   +..+++|+.|++
T Consensus       808 ~Ls~C--~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~-----nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L  876 (1153)
T PLN03210        808 EIENC--INLETLPTGI-NLESLESLDLSGCSRLRTFPDI---ST-----NISDLNLSRTGIEEVPWWIEKFSNLSFLDM  876 (1153)
T ss_pred             ECCCC--CCcCeeCCCC-CccccCEEECCCCCcccccccc---cc-----ccCEeECCCCCCccChHHHhcCCCCCEEEC
Confidence            98887  3333467665 6889999999998765555542   23     799999999998765   788999999999


Q ss_pred             cCCccccccCccccCCCCCCEeeCCCCc
Q 044980          280 SLNMLNGSIPLSLGQISHLEYLDLSNNK  307 (313)
Q Consensus       280 ~~n~l~~~ip~~l~~l~~L~~L~l~~n~  307 (313)
                      ++|.-...+|..+..+++|+.+++++|.
T Consensus       877 ~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        877 NGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCCcCccCcccccccCCCeeecCCCc
Confidence            9965333788888899999999999884

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.67  E-value=5.5e-18  Score=144.74  Aligned_cols=227  Identities=19%  Similarity=0.173  Sum_probs=144.8

Q ss_pred             CcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcC-CccCCCCCchhhhhcCccCee
Q 044980           74 YLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLG-QVHLGKASDCWIYSLRHLFFI  152 (313)
Q Consensus        74 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L  152 (313)
                      .-..+.|..|.|+..-+.+|+.++.||+|||++|.|  ......+|.+++.|..|-+. +|+|+......|..+..|+.|
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~I--s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNI--SFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccch--hhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            344556666777765555677777777777777775  11112256666665554443 366665544455555555555


Q ss_pred             eccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccc-------------------------
Q 044980          153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSC-------------------------  207 (313)
Q Consensus       153 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n-------------------------  207 (313)
                      .+.-|++.-.....|..++++..|.+.+|.+...--..+..+..++.  +.+..|                         
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~t--lhlA~np~icdCnL~wla~~~a~~~ietsga  223 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKT--LHLAQNPFICDCNLPWLADDLAMNPIETSGA  223 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccch--HhhhcCccccccccchhhhHHhhchhhcccc
Confidence            55555555333444444555555555554443111112333333333  222221                         


Q ss_pred             ----------------------------------ccccccccc-cccccCCCcCEEEccCCCCCCCcchhhhhhcccccc
Q 044980          208 ----------------------------------MVRFHQLIP-TSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTY  252 (313)
Q Consensus       208 ----------------------------------~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~  252 (313)
                                                        ........| ..|..+++|+.|++++|.+++.-+..|..+.     
T Consensus       224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a-----  298 (498)
T KOG4237|consen  224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA-----  298 (498)
T ss_pred             eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh-----
Confidence                                              000111122 2368889999999999999988888888888     


Q ss_pred             CccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCc
Q 044980          253 ALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFV  309 (313)
Q Consensus       253 ~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~  309 (313)
                      .++.|.|..|++...    |.++..|+.|+|.+|+|+-.-|..|..+..|..|++-.|.+.
T Consensus       299 ~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  299 ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            899999999998654    888999999999999999888888999999999999988774

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=1.6e-18  Score=132.34  Aligned_cols=159  Identities=21%  Similarity=0.286  Sum_probs=114.3

Q ss_pred             ccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCC
Q 044980           93 VGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTS  172 (313)
Q Consensus        93 l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~  172 (313)
                      +.++.+++.|-|++|++   ....|.+..+.+|+.|++++|++... |.++..+++|+.|+++-|.+. .+|..|+.++.
T Consensus        29 Lf~~s~ITrLtLSHNKl---~~vppnia~l~nlevln~~nnqie~l-p~~issl~klr~lnvgmnrl~-~lprgfgs~p~  103 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKL---TVVPPNIAELKNLEVLNLSNNQIEEL-PTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA  103 (264)
T ss_pred             ccchhhhhhhhcccCce---eecCCcHHHhhhhhhhhcccchhhhc-Chhhhhchhhhheecchhhhh-cCccccCCCch
Confidence            44567777788888885   33345677778888888888887654 556778888888888888777 77888888888


Q ss_pred             CCEEEccCCCCC-CCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccc
Q 044980          173 LKQIDLSHNQFN-FTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGT  251 (313)
Q Consensus       173 L~~L~l~~n~l~-~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~  251 (313)
                      |+.||+.+|.+. ..+|..|..+..|+-  ++++.|   -...+|..++++++|+.|.+..|.+- .+|..++.+.    
T Consensus       104 levldltynnl~e~~lpgnff~m~tlra--lyl~dn---dfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt----  173 (264)
T KOG0617|consen  104 LEVLDLTYNNLNENSLPGNFFYMTTLRA--LYLGDN---DFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLT----  173 (264)
T ss_pred             hhhhhccccccccccCCcchhHHHHHHH--HHhcCC---CcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHH----
Confidence            888888888775 346666767777777  777776   23347777777778888887777766 4567777777    


Q ss_pred             cCccEEEccccccccc
Q 044980          252 YALVSLILSHCQISAA  267 (313)
Q Consensus       252 ~~L~~L~Ls~n~l~~~  267 (313)
                       .|+.|.+.+|+++-.
T Consensus       174 -~lrelhiqgnrl~vl  188 (264)
T KOG0617|consen  174 -RLRELHIQGNRLTVL  188 (264)
T ss_pred             -HHHHHhcccceeeec
Confidence             677777777776543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.63  E-value=4.7e-16  Score=148.79  Aligned_cols=205  Identities=19%  Similarity=0.226  Sum_probs=155.3

Q ss_pred             CCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980           72 FGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF  150 (313)
Q Consensus        72 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  150 (313)
                      .++|+.|++++|.++. +|..+.  ..|+.|+|++|.+.    .+| .+.  ..|+.|++++|.+.. +|..+  ..+|+
T Consensus       219 ~~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~----~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l--~~sL~  286 (754)
T PRK15370        219 QGNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT----ELPERLP--SALQSLDLFHNKISC-LPENL--PEELR  286 (754)
T ss_pred             ccCCCEEECCCCcccc-CChhhh--ccccEEECcCCccC----cCChhHh--CCCCEEECcCCccCc-ccccc--CCCCc
Confidence            3579999999999884 666553  47999999999962    344 232  579999999999985 45433  24799


Q ss_pred             eeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEc
Q 044980          151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDF  230 (313)
Q Consensus       151 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l  230 (313)
                      +|++++|.++ .+|..+.  ++|+.|++++|.++. +|..+  .++|+.  |.+++|  .+.. +|..+.  ++|+.|++
T Consensus       287 ~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~--L~Ls~N--~Lt~-LP~~l~--~sL~~L~L  353 (754)
T PRK15370        287 YLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKT--LEAGEN--ALTS-LPASLP--PELQVLDV  353 (754)
T ss_pred             EEECCCCccc-cCcccch--hhHHHHHhcCCcccc-CCccc--ccccee--ccccCC--cccc-CChhhc--CcccEEEC
Confidence            9999999998 5666543  479999999999984 55433  367888  888888  4544 565553  68999999


Q ss_pred             cCCCCCCCcchhhhhhccccccCccEEEcccccccccccCC-CCCCEEEccCCccccccCcccc----CCCCCCEeeCCC
Q 044980          231 SSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKL-SSLRNLDFSLNMLNGSIPLSLG----QISHLEYLDLSN  305 (313)
Q Consensus       231 ~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~L~~L~l~~n~l~~~ip~~l~----~l~~L~~L~l~~  305 (313)
                      ++|.+.. +|..+.  +     +|+.|++++|.++.....+ ..|+.|++++|++. .+|..+.    ..+.+..+++.+
T Consensus       354 s~N~L~~-LP~~lp--~-----~L~~LdLs~N~Lt~LP~~l~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~  424 (754)
T PRK15370        354 SKNQITV-LPETLP--P-----TITTLDVSRNALTNLPENLPAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEY  424 (754)
T ss_pred             CCCCCCc-CChhhc--C-----CcCEEECCCCcCCCCCHhHHHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeC
Confidence            9999984 565442  3     8999999999998762222 46999999999998 6776543    357889999999


Q ss_pred             CcCcc
Q 044980          306 NKFVT  310 (313)
Q Consensus       306 n~l~~  310 (313)
                      |.++.
T Consensus       425 Npls~  429 (754)
T PRK15370        425 NPFSE  429 (754)
T ss_pred             CCccH
Confidence            99863

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.62  E-value=7.6e-17  Score=150.72  Aligned_cols=216  Identities=26%  Similarity=0.328  Sum_probs=153.9

Q ss_pred             CCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCe
Q 044980           73 GYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFF  151 (313)
Q Consensus        73 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  151 (313)
                      +.++.|+.++|.++...+..  .-.+|++++++.|.+    ..+| ++..+.+|+.++..+|.++ ..|..+....+|+.
T Consensus       219 ~~l~~L~a~~n~l~~~~~~p--~p~nl~~~dis~n~l----~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~  291 (1081)
T KOG0618|consen  219 PSLTALYADHNPLTTLDVHP--VPLNLQYLDISHNNL----SNLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVS  291 (1081)
T ss_pred             cchheeeeccCcceeecccc--ccccceeeecchhhh----hcchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHH
Confidence            55666666666665332221  225788888888885    3333 7788888888888888884 44666777788888


Q ss_pred             eeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhh-h-------------------------cCccccccccccc
Q 044980          152 IVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWL-S-------------------------KLNELSSFLLNLV  205 (313)
Q Consensus       152 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~-~-------------------------~l~~L~~~~L~l~  205 (313)
                      |.+..|.+. .+|.....++.|++|+|..|.+. ..|..+ .                         .++.|+.  |.+.
T Consensus       292 l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~--Lyla  367 (1081)
T KOG0618|consen  292 LSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQE--LYLA  367 (1081)
T ss_pred             HHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHH--HHHh
Confidence            888888887 67777788899999999999886 344321 1                         1235556  6666


Q ss_pred             ccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc------------------
Q 044980          206 SCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA------------------  267 (313)
Q Consensus       206 ~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~------------------  267 (313)
                      +|  .+...+...+.++.+|++|+|++|++.......+..++     .|+.|+||||+++..                  
T Consensus       368 nN--~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle-----~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN  440 (1081)
T KOG0618|consen  368 NN--HLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLE-----ELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN  440 (1081)
T ss_pred             cC--cccccchhhhccccceeeeeecccccccCCHHHHhchH-----HhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC
Confidence            66  66666777788889999999999999876666778888     899999999987643                  


Q ss_pred             -------ccCCCCCCEEEccCCcccc-ccCccccCCCCCCEeeCCCCc
Q 044980          268 -------LGKLSSLRNLDFSLNMLNG-SIPLSLGQISHLEYLDLSNNK  307 (313)
Q Consensus       268 -------~~~~~~L~~L~l~~n~l~~-~ip~~l~~l~~L~~L~l~~n~  307 (313)
                             +..++.|+.+|++.|+++. .+|.. ...++|++||++||.
T Consensus       441 ~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~-~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  441 QLLSFPELAQLPQLKVLDLSCNNLSEVTLPEA-LPSPNLKYLDLSGNT  487 (1081)
T ss_pred             ceeechhhhhcCcceEEecccchhhhhhhhhh-CCCcccceeeccCCc
Confidence                   5566778888888888773 22222 222788888888875

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.60  E-value=4.1e-17  Score=152.44  Aligned_cols=223  Identities=24%  Similarity=0.238  Sum_probs=159.7

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCC-------------------CCCch-hhccCCCCCEEEc
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLH-------------------VDSLS-WLSSLLLLEHIDL  130 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~-------------------~~~~~-~~~~l~~L~~L~l  130 (313)
                      .-.+|+++++++|++.+ +|+.++.+.+|+.+...+|.+...                   ..-+| ...+++.|++|++
T Consensus       239 ~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL  317 (1081)
T KOG0618|consen  239 VPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDL  317 (1081)
T ss_pred             ccccceeeecchhhhhc-chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeee
Confidence            34567777777777664 455566666777776666655110                   01122 3445788899999


Q ss_pred             CCccCCCCCchhhhhc-------------------------CccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCC
Q 044980          131 GQVHLGKASDCWIYSL-------------------------RHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNF  185 (313)
Q Consensus       131 ~~n~l~~~~~~~~~~l-------------------------~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (313)
                      ..|.+....+..+..+                         ..|+.|++.+|.++...-+.+.+++.|+.|+|++|++..
T Consensus       318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~  397 (1081)
T KOG0618|consen  318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS  397 (1081)
T ss_pred             hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence            9888865433222211                         127888999999987766778899999999999999985


Q ss_pred             CCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccc
Q 044980          186 TSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS  265 (313)
Q Consensus       186 ~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~  265 (313)
                      .....+.++..|++  |++++|  .+. .+|..+.++..|++|...+|.+.. +| .+..++     .|+.+|+|.|+++
T Consensus       398 fpas~~~kle~Lee--L~LSGN--kL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP-e~~~l~-----qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  398 FPASKLRKLEELEE--LNLSGN--KLT-TLPDTVANLGRLHTLRAHSNQLLS-FP-ELAQLP-----QLKVLDLSCNNLS  465 (1081)
T ss_pred             CCHHHHhchHHhHH--Hhcccc--hhh-hhhHHHHhhhhhHHHhhcCCceee-ch-hhhhcC-----cceEEecccchhh
Confidence            44457888999999  999999  444 378999999999999999999984 45 678888     9999999999998


Q ss_pred             cc---ccCC-CCCCEEEccCCccccccCccccCCCCCCEeeCCCC
Q 044980          266 AA---LGKL-SSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNN  306 (313)
Q Consensus       266 ~~---~~~~-~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n  306 (313)
                      ..   .... ++|++||+++|.-..---..|..+.++...++.-|
T Consensus       466 ~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  466 EVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             hhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            76   2223 79999999999733233334445556665555554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.58  E-value=2.1e-14  Score=136.99  Aligned_cols=201  Identities=21%  Similarity=0.170  Sum_probs=117.7

Q ss_pred             CCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCee
Q 044980           73 GYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI  152 (313)
Q Consensus        73 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  152 (313)
                      ++|+.|++..|+++. +|.   ..+.|++|++++|++.    .+|.+  .++|+.|++++|.+... |.   ...+|+.|
T Consensus       222 ~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt----sLP~l--p~sL~~L~Ls~N~L~~L-p~---lp~~L~~L  287 (788)
T PRK15387        222 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT----SLPVL--PPGLLELSIFSNPLTHL-PA---LPSGLCKL  287 (788)
T ss_pred             cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC----cccCc--ccccceeeccCCchhhh-hh---chhhcCEE
Confidence            357778888887774 453   2467888888888762    23321  35778888888877643 22   23458888


Q ss_pred             eccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccC
Q 044980          153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSS  232 (313)
Q Consensus       153 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~  232 (313)
                      ++++|+++ .+|..   .++|+.|++++|.+.+ +|..   ...|+.  |.+++|  .+.. +|..   ..+|+.|++++
T Consensus       288 ~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~--L~Ls~N--~L~~-LP~l---p~~Lq~LdLS~  351 (788)
T PRK15387        288 WIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCK--LWAYNN--QLTS-LPTL---PSGLQELSVSD  351 (788)
T ss_pred             ECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccc--cccccC--cccc-cccc---ccccceEecCC
Confidence            88888887 55642   4679999999999885 4432   234556  666666  3332 3421   13677777777


Q ss_pred             CCCCCCcchhhhh-------------hccccccCccEEEcccccccccccCCCCCCEEEccCCccccccCccccCCCCCC
Q 044980          233 VKLSQDISQVLDI-------------FSAYGTYALVSLILSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLE  299 (313)
Q Consensus       233 n~l~~~~~~~l~~-------------~~~~~~~~L~~L~Ls~n~l~~~~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~  299 (313)
                      |++.+ +|.....             ++. ...+|+.|++++|++++.-...++|+.|++++|+++ .+|..   ..+|+
T Consensus       352 N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~-l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~Ls-sIP~l---~~~L~  425 (788)
T PRK15387        352 NQLAS-LPTLPSELYKLWAYNNRLTSLPA-LPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT-SLPML---PSGLL  425 (788)
T ss_pred             CccCC-CCCCCcccceehhhccccccCcc-cccccceEEecCCcccCCCCcccCCCEEEccCCcCC-CCCcc---hhhhh
Confidence            77764 2321100             000 011455566666655543222345666666666665 35542   23456


Q ss_pred             EeeCCCCcCc
Q 044980          300 YLDLSNNKFV  309 (313)
Q Consensus       300 ~L~l~~n~l~  309 (313)
                      .|++++|+|+
T Consensus       426 ~L~Ls~NqLt  435 (788)
T PRK15387        426 SLSVYRNQLT  435 (788)
T ss_pred             hhhhccCccc
Confidence            6666666664

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.58  E-value=1.2e-16  Score=122.11  Aligned_cols=165  Identities=21%  Similarity=0.254  Sum_probs=128.0

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF  150 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  150 (313)
                      ++.+++.|.+++|.++. +|+.+..+.+|+.|++++|++   ....+.++.+++|+.|+++.|++.. .|..|+.++.|+
T Consensus        31 ~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqi---e~lp~~issl~klr~lnvgmnrl~~-lprgfgs~p~le  105 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQI---EELPTSISSLPKLRILNVGMNRLNI-LPRGFGSFPALE  105 (264)
T ss_pred             chhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchh---hhcChhhhhchhhhheecchhhhhc-CccccCCCchhh
Confidence            56778888888888874 677788888888888888885   3333478888888888888888764 466688888888


Q ss_pred             eeeccCcccC-cCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEE
Q 044980          151 FIVLSYNQFQ-GKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSID  229 (313)
Q Consensus       151 ~L~L~~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~  229 (313)
                      +|++.+|.+. ..+|..|..+..|+-|++++|.+. .+|..++++++||.  +.+..|  .+. .+|..++.+++|++|.
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqi--l~lrdn--dll-~lpkeig~lt~lrelh  179 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQI--LSLRDN--DLL-SLPKEIGDLTRLRELH  179 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeE--EeeccC--chh-hCcHHHHHHHHHHHHh
Confidence            8888888876 457888888888888888888887 67778888888888  777776  222 2788888888888888


Q ss_pred             ccCCCCCCCcchhhhhhc
Q 044980          230 FSSVKLSQDISQVLDIFS  247 (313)
Q Consensus       230 l~~n~l~~~~~~~l~~~~  247 (313)
                      +++|.++ .+|+.++.+.
T Consensus       180 iqgnrl~-vlppel~~l~  196 (264)
T KOG0617|consen  180 IQGNRLT-VLPPELANLD  196 (264)
T ss_pred             cccceee-ecChhhhhhh
Confidence            8888887 4555555544

>PLN03150 hypothetical protein; Provisional

Probab=99.57  E-value=3.8e-14  Score=134.71  Aligned_cols=155  Identities=21%  Similarity=0.222  Sum_probs=120.1

Q ss_pred             cCCCHHhHHHHHHhhhhcccCCCCCCCCCCCCCCCc-----ccCceEecCCCCCEEEEecCCCCCCcceecCCCCccccc
Q 044980           14 VGCKESERGALLKLKRNLKDLSNCLASWNIGDGDCC-----KWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMR   88 (313)
Q Consensus        14 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~c-----~~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~   88 (313)
                      ..+.+.|..||+.+|.++.++..  .+|.  + ++|     .|.|+.|......        ....++.|+|++|.+.|.
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~--g-~~C~p~~~~w~Gv~C~~~~~~--------~~~~v~~L~L~~n~L~g~  433 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPLR--FGWN--G-DPCVPQQHPWSGADCQFDSTK--------GKWFIDGLGLDNQGLRGF  433 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCccc--CCCC--C-CCCCCcccccccceeeccCCC--------CceEEEEEECCCCCcccc
Confidence            34567899999999999876532  4785  3 344     7999999521110        001244556667999999


Q ss_pred             ccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCC
Q 044980           89 SKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTL  167 (313)
Q Consensus        89 ~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~  167 (313)
                      +|..++++++|+.|+|++|.+   .+.+| .+..+++|+.|++++|.+++.+|..+..+++|++|++++|.++|.+|..+
T Consensus       434 ip~~i~~L~~L~~L~Ls~N~l---~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l  510 (623)
T PLN03150        434 IPNDISKLRHLQSINLSGNSI---RGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL  510 (623)
T ss_pred             CCHHHhCCCCCCEEECCCCcc---cCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHH
Confidence            999999999999999999985   45666 68889999999999999999899889999999999999999999999877


Q ss_pred             CCC-CCCCEEEccCCCCC
Q 044980          168 GNL-TSLKQIDLSHNQFN  184 (313)
Q Consensus       168 ~~l-~~L~~L~l~~n~l~  184 (313)
                      ... .++..+++.+|...
T Consensus       511 ~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        511 GGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             hhccccCceEEecCCccc
Confidence            653 46678888888644

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.51  E-value=1.2e-15  Score=130.55  Aligned_cols=205  Identities=20%  Similarity=0.203  Sum_probs=149.5

Q ss_pred             ccccccCCCCCcEeeccCCCCCCCCCCch--hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccC-cccCcCCCC
Q 044980           89 SKLVVGNLSNLQYLDLSWIDCRLHVDSLS--WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSY-NQFQGKIPS  165 (313)
Q Consensus        89 ~~~~l~~l~~L~~L~L~~n~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~  165 (313)
                      +|..+.  +.-.++.|..|+|    ..+|  +|+.+++|+.+|+++|.|+...|++|..+.+|..|.+.+ |+|+..-..
T Consensus        61 VP~~LP--~~tveirLdqN~I----~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~  134 (498)
T KOG4237|consen   61 VPANLP--PETVEIRLDQNQI----SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG  134 (498)
T ss_pred             CcccCC--CcceEEEeccCCc----ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence            454432  3457899999997    3444  799999999999999999999999999999977776666 999955556


Q ss_pred             CCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccccccccccccc-ccccCCCcCEEEccCCCCCC-------
Q 044980          166 TLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPT-SFIRLCKLTSIDFSSVKLSQ-------  237 (313)
Q Consensus       166 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~-------  237 (313)
                      .|.++..++.|.++-|++.-...+.|..++++..  |.+..|  .+. .++. .+..+.+++.+.+..|.+-.       
T Consensus       135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~l--LslyDn--~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl  209 (498)
T KOG4237|consen  135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSL--LSLYDN--KIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWL  209 (498)
T ss_pred             HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcch--hcccch--hhh-hhccccccchhccchHhhhcCccccccccchh
Confidence            7889999999999999999777788999999998  887777  222 2343 56677777777776665211       


Q ss_pred             -----Ccc--------------------------------------------------hhhhhhccccccCccEEEcccc
Q 044980          238 -----DIS--------------------------------------------------QVLDIFSAYGTYALVSLILSHC  262 (313)
Q Consensus       238 -----~~~--------------------------------------------------~~l~~~~~~~~~~L~~L~Ls~n  262 (313)
                           ..|                                                  ..|..+     ++|+.|+|++|
T Consensus       210 a~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L-----~~L~~lnlsnN  284 (498)
T KOG4237|consen  210 ADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL-----PNLRKLNLSNN  284 (498)
T ss_pred             hhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhc-----ccceEeccCCC
Confidence                 000                                                  112222     26777777777


Q ss_pred             ccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCc
Q 044980          263 QISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFV  309 (313)
Q Consensus       263 ~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~  309 (313)
                      ++++.    |.....+++|.|..|++.-.-...|.++..|+.|+|.+|+|+
T Consensus       285 ~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it  335 (498)
T KOG4237|consen  285 KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT  335 (498)
T ss_pred             ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence            77665    667777777777777776444446667777777888888776

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.45  E-value=1.4e-14  Score=122.35  Aligned_cols=232  Identities=16%  Similarity=0.162  Sum_probs=168.6

Q ss_pred             CCCCcceecCCCCccccc----ccccccCCCCCcEeeccCCCCCCCCCCch--------hhccCCCCCEEEcCCccCCCC
Q 044980           71 PFGYLKYSDAEDDDHYMR----SKLVVGNLSNLQYLDLSWIDCRLHVDSLS--------WLSSLLLLEHIDLGQVHLGKA  138 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~L~~n~~~~~~~~~~--------~~~~l~~L~~L~l~~n~l~~~  138 (313)
                      .+..++.+++++|.+...    +...+.+.+.|++.++++-.-......+|        ++.++++|++++||+|.+...
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK  107 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence            456677888888988755    34456677899999988654211122222        356678999999999999766


Q ss_pred             Cchh----hhhcCccCeeeccCcccCcC-------------CCCCCCCCCCCCEEEccCCCCCCC----CchhhhcCccc
Q 044980          139 SDCW----IYSLRHLFFIVLSYNQFQGK-------------IPSTLGNLTSLKQIDLSHNQFNFT----SPGWLSKLNEL  197 (313)
Q Consensus       139 ~~~~----~~~l~~L~~L~L~~n~~~~~-------------~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L  197 (313)
                      .+..    +..+..|++|+|.+|.+.-.             ......+-++|+.+...+|++...    +...+...+.|
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l  187 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL  187 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence            6543    45666799999999987611             123345668899999999998533    23456777899


Q ss_pred             cccccccccccccccc--ccccccccCCCcCEEEccCCCCCCCcc----hhhhhhccccccCccEEEccccccccc----
Q 044980          198 SSFLLNLVSCMVRFHQ--LIPTSFIRLCKLTSIDFSSVKLSQDIS----QVLDIFSAYGTYALVSLILSHCQISAA----  267 (313)
Q Consensus       198 ~~~~L~l~~n~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~l~~~~~~~~~~L~~L~Ls~n~l~~~----  267 (313)
                      +.  +.+..|-....+  .+...+..+++|++||+.+|.++....    ..+..|+     +|+.++++.|.+...    
T Consensus       188 ee--vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~-----~L~El~l~dcll~~~Ga~a  260 (382)
T KOG1909|consen  188 EE--VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP-----HLRELNLGDCLLENEGAIA  260 (382)
T ss_pred             ce--EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc-----hheeecccccccccccHHH
Confidence            99  888887222222  355678889999999999999986443    4455566     899999999998755    


Q ss_pred             -----ccCCCCCCEEEccCCcccc----ccCccccCCCCCCEeeCCCCcCc
Q 044980          268 -----LGKLSSLRNLDFSLNMLNG----SIPLSLGQISHLEYLDLSNNKFV  309 (313)
Q Consensus       268 -----~~~~~~L~~L~l~~n~l~~----~ip~~l~~l~~L~~L~l~~n~l~  309 (313)
                           -...++|++|.+.+|.++.    .+...+...+.|+.|+|++|++.
T Consensus       261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence                 3347899999999999984    22334456889999999999983

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.23  E-value=6.3e-13  Score=118.95  Aligned_cols=191  Identities=24%  Similarity=0.313  Sum_probs=141.3

Q ss_pred             CCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCC
Q 044980           96 LSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLK  174 (313)
Q Consensus        96 l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~  174 (313)
                      +..-...|++.|.+    ..+| .++.+..|+.+.+.+|.+.. +|..++.+..|.+++++.|+++ .+|..++.++ |+
T Consensus        74 ltdt~~aDlsrNR~----~elp~~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lk  146 (722)
T KOG0532|consen   74 LTDTVFADLSRNRF----SELPEEACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LK  146 (722)
T ss_pred             ccchhhhhcccccc----ccCchHHHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ce
Confidence            44445677888875    3344 46666778888888887764 4666888888999999999888 7788787777 88


Q ss_pred             EEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCc
Q 044980          175 QIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYAL  254 (313)
Q Consensus       175 ~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L  254 (313)
                      .|.+++|+++ .+|..++....|..  ++.+.|  .+. .+|..++++.+|+.|.+..|.+.. +|+.+..++      |
T Consensus       147 vli~sNNkl~-~lp~~ig~~~tl~~--ld~s~n--ei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~Lp------L  213 (722)
T KOG0532|consen  147 VLIVSNNKLT-SLPEEIGLLPTLAH--LDVSKN--EIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSLP------L  213 (722)
T ss_pred             eEEEecCccc-cCCcccccchhHHH--hhhhhh--hhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCCc------e
Confidence            8888998887 67777887777777  888887  332 377788888889988888888875 456666665      8


Q ss_pred             cEEEccccccccc---ccCCCCCCEEEccCCccccccCccccCCCC---CCEeeCCCCc
Q 044980          255 VSLILSHCQISAA---LGKLSSLRNLDFSLNMLNGSIPLSLGQISH---LEYLDLSNNK  307 (313)
Q Consensus       255 ~~L~Ls~n~l~~~---~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~---L~~L~l~~n~  307 (313)
                      ..||+|.|+++..   |..+.+|++|-|.+|.+. .-|..++-.-.   .++|+...++
T Consensus       214 i~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  214 IRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             eeeecccCceeecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            8888888887766   788888888888888887 55555543322   3456655553

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.17  E-value=9e-12  Score=105.54  Aligned_cols=188  Identities=19%  Similarity=0.169  Sum_probs=112.5

Q ss_pred             ccCCCCCcEeeccCCCCCCCCCCch----hhccCCCCCEEEcCCccCCCCCchh-------------hhhcCccCeeecc
Q 044980           93 VGNLSNLQYLDLSWIDCRLHVDSLS----WLSSLLLLEHIDLGQVHLGKASDCW-------------IYSLRHLFFIVLS  155 (313)
Q Consensus        93 l~~l~~L~~L~L~~n~~~~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~-------------~~~l~~L~~L~L~  155 (313)
                      +..+++|++|+||+|.+  -...++    -+.++..|++|++.+|.+....-..             .+.-++|+++...
T Consensus        88 L~~~~~L~~ldLSDNA~--G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~  165 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAF--GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG  165 (382)
T ss_pred             HhcCCceeEeecccccc--CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence            34455677777777765  222222    2455666777777776664322111             1122346777777


Q ss_pred             CcccCcC----CCCCCCCCCCCCEEEccCCCCCCC----CchhhhcCcccccccccccccccccc--cccccccccCCCc
Q 044980          156 YNQFQGK----IPSTLGNLTSLKQIDLSHNQFNFT----SPGWLSKLNELSSFLLNLVSCMVRFH--QLIPTSFIRLCKL  225 (313)
Q Consensus       156 ~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~~~L~l~~n~~~~~--~~~~~~~~~~~~L  225 (313)
                      +|.+...    +...|...+.|+.+.+..|.+...    +...+..+++|+.  |++..|.....  ..+...+..+++|
T Consensus       166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~Lev--Ldl~DNtft~egs~~LakaL~s~~~L  243 (382)
T KOG1909|consen  166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEV--LDLRDNTFTLEGSVALAKALSSWPHL  243 (382)
T ss_pred             ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCccee--eecccchhhhHHHHHHHHHhcccchh
Confidence            7665421    123344556677777777766422    1234556677777  66666611111  1244555667788


Q ss_pred             CEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc--------ccCCCCCCEEEccCCcc
Q 044980          226 TSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--------LGKLSSLRNLDFSLNML  284 (313)
Q Consensus       226 ~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--------~~~~~~L~~L~l~~n~l  284 (313)
                      +.|++++|.+.......+...-....++|+.+.+.+|.++..        ....+.|+.|+|++|.+
T Consensus       244 ~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  244 RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             eeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            888888888887666655554444456888888888888755        55577888889988888

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.16  E-value=6e-11  Score=107.57  Aligned_cols=174  Identities=30%  Similarity=0.402  Sum_probs=84.8

Q ss_pred             CCCCCcEeeccCCCCCCCCCCch-hhccCC-CCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCC
Q 044980           95 NLSNLQYLDLSWIDCRLHVDSLS-WLSSLL-LLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTS  172 (313)
Q Consensus        95 ~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~  172 (313)
                      .++.++.|++.+|.+    ..++ ...... +|+.|++++|.+... |..+..+++|+.|++++|++. .+|......+.
T Consensus       114 ~~~~l~~L~l~~n~i----~~i~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~  187 (394)
T COG4886         114 ELTNLTSLDLDNNNI----TDIPPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSN  187 (394)
T ss_pred             cccceeEEecCCccc----ccCccccccchhhcccccccccchhhh-hhhhhccccccccccCCchhh-hhhhhhhhhhh
Confidence            345555666655553    2222 222232 566666666655443 122555556666666666655 44444435555


Q ss_pred             CCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhcccccc
Q 044980          173 LKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTY  252 (313)
Q Consensus       173 L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~  252 (313)
                      |+.|++++|.+. .+|........|++  +.+++|  . ....+..+.++.++..+.+.+|++... +..+..++     
T Consensus       188 L~~L~ls~N~i~-~l~~~~~~~~~L~~--l~~~~N--~-~~~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~-----  255 (394)
T COG4886         188 LNNLDLSGNKIS-DLPPEIELLSALEE--LDLSNN--S-IIELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLS-----  255 (394)
T ss_pred             hhheeccCCccc-cCchhhhhhhhhhh--hhhcCC--c-ceecchhhhhcccccccccCCceeeec-cchhcccc-----
Confidence            666666666655 34443334444555  555554  1 111344444555555555555554421 23333333     


Q ss_pred             CccEEEccccccccc--ccCCCCCCEEEccCCcccc
Q 044980          253 ALVSLILSHCQISAA--LGKLSSLRNLDFSLNMLNG  286 (313)
Q Consensus       253 ~L~~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~~  286 (313)
                      .++.|++++|.++..  ++...+++.|++++|.+..
T Consensus       256 ~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         256 NLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             ccceeccccccccccccccccCccCEEeccCccccc
Confidence            455555555555444  4445555555555555553

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.15  E-value=6.6e-11  Score=107.33  Aligned_cols=191  Identities=32%  Similarity=0.436  Sum_probs=140.2

Q ss_pred             EeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcC-ccCeeeccCcccCcCCCCCCCCCCCCCEEEcc
Q 044980          101 YLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLR-HLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLS  179 (313)
Q Consensus       101 ~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~  179 (313)
                      .+.+..+.+   ......+..++.++.+++.+|.++...+ ...... +|+.|++++|++. .+|..+..+++|+.|+++
T Consensus        97 ~l~~~~~~~---~~~~~~~~~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~  171 (394)
T COG4886          97 SLDLNLNRL---RSNISELLELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLS  171 (394)
T ss_pred             eeecccccc---ccCchhhhcccceeEEecCCcccccCcc-ccccchhhcccccccccchh-hhhhhhhccccccccccC
Confidence            466666653   2334445666788899999888876544 344553 8999999999888 666667888999999999


Q ss_pred             CCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEc
Q 044980          180 HNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLIL  259 (313)
Q Consensus       180 ~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L  259 (313)
                      +|.+. .+|...+..+.|+.  +.+++|  .+. .+|........|+++.+++|.+. ..+..+..+.     .+..+.+
T Consensus       172 ~N~l~-~l~~~~~~~~~L~~--L~ls~N--~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~-----~l~~l~l  239 (394)
T COG4886         172 FNDLS-DLPKLLSNLSNLNN--LDLSGN--KIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLK-----NLSGLEL  239 (394)
T ss_pred             Cchhh-hhhhhhhhhhhhhh--eeccCC--ccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcc-----ccccccc
Confidence            99987 45555557788888  888887  332 36665556667889999888533 2345566666     7888888


Q ss_pred             ccccccc--c-ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCcc
Q 044980          260 SHCQISA--A-LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       260 s~n~l~~--~-~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~  310 (313)
                      .+|++..  . +..+++++.|++++|.++ .++. +..+.++++|++++|.++.
T Consensus       240 ~~n~~~~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         240 SNNKLEDLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             CCceeeeccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccc
Confidence            8888765  2 777888999999999988 5665 7888889999999887764

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=1.2e-11  Score=107.59  Aligned_cols=203  Identities=21%  Similarity=0.164  Sum_probs=131.7

Q ss_pred             cCCCCCcEeeccCCCCCCCCCCch---hhccCCCCCEEEcCCccCCCCC--chhhhhcCccCeeeccCcccCcCCCCC-C
Q 044980           94 GNLSNLQYLDLSWIDCRLHVDSLS---WLSSLLLLEHIDLGQVHLGKAS--DCWIYSLRHLFFIVLSYNQFQGKIPST-L  167 (313)
Q Consensus        94 ~~l~~L~~L~L~~n~~~~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~-~  167 (313)
                      .++..|+++.|.++..    +..+   ....|++++.||++.|-+..-.  ......+++|+.|+++.|.+..-.... -
T Consensus       118 sn~kkL~~IsLdn~~V----~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~  193 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRV----EDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT  193 (505)
T ss_pred             hhHHhhhheeecCccc----cccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch
Confidence            3567888888887774    2222   3556888888888888765422  234567888888888888876222211 1


Q ss_pred             CCCCCCCEEEccCCCCCCC-CchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCc-chhhhh
Q 044980          168 GNLTSLKQIDLSHNQFNFT-SPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDI-SQVLDI  245 (313)
Q Consensus       168 ~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~  245 (313)
                      ..++.|+.|.++.|.++.. +-..+..+++|..  |.+.+|...+  .-......+..|+.|+|++|++-... ....+.
T Consensus       194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~--L~L~~N~~~~--~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~  269 (505)
T KOG3207|consen  194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEV--LYLEANEIIL--IKATSTKILQTLQELDLSNNNLIDFDQGYKVGT  269 (505)
T ss_pred             hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHH--hhhhcccccc--eecchhhhhhHHhhccccCCccccccccccccc
Confidence            2467788888888888632 2233456788888  8888873111  11222334567888888888876432 233455


Q ss_pred             hccccccCccEEEccccccccc----------ccCCCCCCEEEccCCccccccCc--cccCCCCCCEeeCCCCcCcc
Q 044980          246 FSAYGTYALVSLILSHCQISAA----------LGKLSSLRNLDFSLNMLNGSIPL--SLGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       246 ~~~~~~~~L~~L~Ls~n~l~~~----------~~~~~~L~~L~l~~n~l~~~ip~--~l~~l~~L~~L~l~~n~l~~  310 (313)
                      ++     .|..|+++.+.+++.          ...+++|+.|+++.|++. ..+.  .+..+++|+.|.+..|.++-
T Consensus       270 l~-----~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  270 LP-----GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             cc-----chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhcccccccc
Confidence            55     788888888887655          345778888999888885 3332  34456677777777777653

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.13  E-value=3e-12  Score=114.68  Aligned_cols=192  Identities=21%  Similarity=0.283  Sum_probs=152.0

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCcc
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHL  149 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  149 (313)
                      .+..-...|++.|.+. .+|..+..+..|+.+.|..|.+    ..+| .++++..|+++|++.|+++.. |..++.++ |
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~----r~ip~~i~~L~~lt~l~ls~NqlS~l-p~~lC~lp-L  145 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCI----RTIPEAICNLEALTFLDLSSNQLSHL-PDGLCDLP-L  145 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccc----eecchhhhhhhHHHHhhhccchhhcC-ChhhhcCc-c
Confidence            3445567788888887 5788888888999999998886    3333 688899999999999999765 44455554 8


Q ss_pred             CeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEE
Q 044980          150 FFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSID  229 (313)
Q Consensus       150 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~  229 (313)
                      ++|.+++|+++ .+|..++.+..|..||.+.|.+. .+|..++.+.+|+.  +.+..|  .+.. +|..+..+ .|..||
T Consensus       146 kvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~--l~vrRn--~l~~-lp~El~~L-pLi~lD  217 (722)
T KOG0532|consen  146 KVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRD--LNVRRN--HLED-LPEELCSL-PLIRLD  217 (722)
T ss_pred             eeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHH--HHHhhh--hhhh-CCHHHhCC-ceeeee
Confidence            99999999998 88988998899999999999987 57778899999988  888887  3333 67777755 599999


Q ss_pred             ccCCCCCCCcchhhhhhccccccCccEEEccccccccc------ccCCCCCCEEEccCCc
Q 044980          230 FSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA------LGKLSSLRNLDFSLNM  283 (313)
Q Consensus       230 l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~------~~~~~~L~~L~l~~n~  283 (313)
                      ++.|++. .+|..|..+.     .|+.|-|.+|.+.+.      -+...-.++|+..-++
T Consensus       218 fScNkis-~iPv~fr~m~-----~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  218 FSCNKIS-YLPVDFRKMR-----HLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             cccCcee-ecchhhhhhh-----hheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence            9999998 6788899998     999999999999876      2222334566666664

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=9.1e-12  Score=108.36  Aligned_cols=211  Identities=21%  Similarity=0.136  Sum_probs=131.1

Q ss_pred             CCCCcceecCCCCccccccc-ccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchh-hhhcCc
Q 044980           71 PFGYLKYSDAEDDDHYMRSK-LVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCW-IYSLRH  148 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~  148 (313)
                      +++.|+.+.+.......... .....|++++.|||+.|-+............+++|+.|+++.|++....... -..++.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            66777777777766543221 2456788888888888865222111223456888888888888876443321 235666


Q ss_pred             cCeeeccCcccCc-CCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccc-cccccccCCCcC
Q 044980          149 LFFIVLSYNQFQG-KIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQL-IPTSFIRLCKLT  226 (313)
Q Consensus       149 L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~-~~~~~~~~~~L~  226 (313)
                      |+.|.++.|.++. .+......+|+|+.|++..|............+..|++  |++++|  .+... .-...+.++.|+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~--LdLs~N--~li~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE--LDLSNN--NLIDFDQGYKVGTLPGLN  274 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh--ccccCC--cccccccccccccccchh
Confidence            8888888888772 22233456788888888888532233333445677888  888887  22221 123457778888


Q ss_pred             EEEccCCCCCCC-cchhhhhhccccccCccEEEccccccccc-----ccCCCCCCEEEccCCccc
Q 044980          227 SIDFSSVKLSQD-ISQVLDIFSAYGTYALVSLILSHCQISAA-----LGKLSSLRNLDFSLNMLN  285 (313)
Q Consensus       227 ~L~l~~n~l~~~-~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~-----~~~~~~L~~L~l~~n~l~  285 (313)
                      .|+++.+.+... .|+.=.......+++|+.|+++.|++.++     +..+++|+.|.+..|.+.
T Consensus       275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            888888887642 12210000111234889999999988766     445667777787777776

>PLN03150 hypothetical protein; Provisional

Probab=99.06  E-value=4.4e-10  Score=107.19  Aligned_cols=107  Identities=23%  Similarity=0.277  Sum_probs=79.2

Q ss_pred             cCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEE
Q 044980          149 LFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSI  228 (313)
Q Consensus       149 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L  228 (313)
                      ++.|+|++|.+.|.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.  |++++|  .+.+.+|+.++++++|+.|
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~--LdLs~N--~lsg~iP~~l~~L~~L~~L  495 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEV--LDLSYN--SFNGSIPESLGQLTSLRIL  495 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE--EECCCC--CCCCCCchHHhcCCCCCEE
Confidence            667777777777777777777777888888888777777777777777777  777777  6667777777777788888


Q ss_pred             EccCCCCCCCcchhhhhhccccccCccEEEccccc
Q 044980          229 DFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQ  263 (313)
Q Consensus       229 ~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~  263 (313)
                      ++++|.+.+.+|..+.....    ++..+++.+|.
T Consensus       496 ~Ls~N~l~g~iP~~l~~~~~----~~~~l~~~~N~  526 (623)
T PLN03150        496 NLNGNSLSGRVPAALGGRLL----HRASFNFTDNA  526 (623)
T ss_pred             ECcCCcccccCChHHhhccc----cCceEEecCCc
Confidence            88888887777776654320    45566776665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.05  E-value=2.9e-10  Score=89.95  Aligned_cols=123  Identities=23%  Similarity=0.166  Sum_probs=44.3

Q ss_pred             CCCCcceecCCCCccccccccccc-CCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCcc
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVG-NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHL  149 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  149 (313)
                      +..+++.|++.+|.++..  +.++ .+.+|+.|++++|.+    ..++.+..++.|++|++++|.++...+.....+++|
T Consensus        17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I----~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L   90 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQI----TKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNL   90 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS------S--TT----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred             cccccccccccccccccc--cchhhhhcCCCEEECCCCCC----ccccCccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence            445678888888888742  2355 477899999999986    345557778899999999999987644323468889


Q ss_pred             CeeeccCcccCcCC-CCCCCCCCCCCEEEccCCCCCCCCc---hhhhcCccccc
Q 044980          150 FFIVLSYNQFQGKI-PSTLGNLTSLKQIDLSHNQFNFTSP---GWLSKLNELSS  199 (313)
Q Consensus       150 ~~L~L~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p---~~~~~l~~L~~  199 (313)
                      ++|++++|++...- -..+..+++|+.|++.+|.++...-   ..+..+++|+.
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~  144 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKV  144 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SE
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhe
Confidence            99999999887321 1345678889999999988763311   13444555555

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.97  E-value=5.1e-10  Score=88.57  Aligned_cols=64  Identities=27%  Similarity=0.339  Sum_probs=11.5

Q ss_pred             hhhccCCCCCEEEcCCccCCCCCchhhh-hcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCC
Q 044980          117 SWLSSLLLLEHIDLGQVHLGKASDCWIY-SLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFN  184 (313)
Q Consensus       117 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (313)
                      +.+.+..++++|++++|.++..-  .+. .+.+|+.|++++|.++ .++ .+..++.|++|++++|+++
T Consensus        13 ~~~~n~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~   77 (175)
T PF14580_consen   13 AQYNNPVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS   77 (175)
T ss_dssp             -------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---
T ss_pred             ccccccccccccccccccccccc--chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC
Confidence            33444555666666666665421  132 3455666666666666 232 3455666666666666665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.96  E-value=2e-10  Score=95.90  Aligned_cols=123  Identities=24%  Similarity=0.274  Sum_probs=67.9

Q ss_pred             ccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCE
Q 044980          148 HLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTS  227 (313)
Q Consensus       148 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~  227 (313)
                      .|++++|++|.++ .+.++..-.|.++.|+++.|.+...  +.+..+.+|+.  |++++|  .+.. +-.+-.++.+++.
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~--LDLS~N--~Ls~-~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQL--LDLSGN--LLAE-CVGWHLKLGNIKT  356 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceE--eecccc--hhHh-hhhhHhhhcCEee
Confidence            3666666666666 5555555566666666666665522  12455555555  555555  1111 1222233445666


Q ss_pred             EEccCCCCCCCcchhhhhhccccccCccEEEccccccccc-----ccCCCCCCEEEccCCccc
Q 044980          228 IDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA-----LGKLSSLRNLDFSLNMLN  285 (313)
Q Consensus       228 L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~-----~~~~~~L~~L~l~~n~l~  285 (313)
                      |.++.|.+...  ..+..+-     +|..||+++|+|...     ++++|.|+.+.+.+|.+.
T Consensus       357 L~La~N~iE~L--SGL~KLY-----SLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  357 LKLAQNKIETL--SGLRKLY-----SLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             eehhhhhHhhh--hhhHhhh-----hheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            66666665432  2244444     566666666666543     666666666666666666

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.95  E-value=1.6e-10  Score=96.38  Aligned_cols=131  Identities=25%  Similarity=0.261  Sum_probs=102.8

Q ss_pred             CCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhcc
Q 044980          169 NLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSA  248 (313)
Q Consensus       169 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~  248 (313)
                      ....|+++|+++|.++ .+..++.-.+.++.  |++++|  ++..  .+.++.+.+|+.||+++|.++.. ...-..+- 
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~--L~lS~N--~i~~--v~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLG-  352 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRR--LILSQN--RIRT--VQNLAELPQLQLLDLSGNLLAEC-VGWHLKLG-  352 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeE--Eecccc--ceee--ehhhhhcccceEeecccchhHhh-hhhHhhhc-
Confidence            3456899999999987 56667777889999  999998  5443  34477889999999999998743 22223344 


Q ss_pred             ccccCccEEEccccccccc--ccCCCCCCEEEccCCcccc-ccCccccCCCCCCEeeCCCCcCcccc
Q 044980          249 YGTYALVSLILSHCQISAA--LGKLSSLRNLDFSLNMLNG-SIPLSLGQISHLEYLDLSNNKFVTKK  312 (313)
Q Consensus       249 ~~~~~L~~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~~-~ip~~l~~l~~L~~L~l~~n~l~~~~  312 (313)
                          +++.|.|++|.+.+.  +..+=+|..||+++|+|.. .--..++++|-|+.+.+.+|.+.+.+
T Consensus       353 ----NIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  353 ----NIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             ----CEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence                789999999998776  7778889999999999873 22336789999999999999998754

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.94  E-value=1.8e-10  Score=94.77  Aligned_cols=232  Identities=19%  Similarity=0.181  Sum_probs=159.3

Q ss_pred             CCCcceecCCCCccccccc----ccccCCCCCcEeeccCCCCCCCCCC--------chhhccCCCCCEEEcCCccCCCCC
Q 044980           72 FGYLKYSDAEDDDHYMRSK----LVVGNLSNLQYLDLSWIDCRLHVDS--------LSWLSSLLLLEHIDLGQVHLGKAS  139 (313)
Q Consensus        72 l~~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~L~~n~~~~~~~~--------~~~~~~l~~L~~L~l~~n~l~~~~  139 (313)
                      +..++.+++++|.+.....    ..+.+-.+|+..+++.-........        .+++.+|++|+.++++.|.+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            4566777778888876533    3455567888888876442111111        345788999999999999998766


Q ss_pred             ch----hhhhcCccCeeeccCcccCcC----CC---------CCCCCCCCCCEEEccCCCCC-CCCc---hhhhcCcccc
Q 044980          140 DC----WIYSLRHLFFIVLSYNQFQGK----IP---------STLGNLTSLKQIDLSHNQFN-FTSP---GWLSKLNELS  198 (313)
Q Consensus       140 ~~----~~~~l~~L~~L~L~~n~~~~~----~~---------~~~~~l~~L~~L~l~~n~l~-~~~p---~~~~~l~~L~  198 (313)
                      |.    .+..-..|++|.+++|.+.-.    +.         +...+-|.|+.+....|++. |+..   ..+....+|+
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk  188 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK  188 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence            65    345556699999999987521    11         22345688999999999985 2211   2344456888


Q ss_pred             cccccccccccc---cccccccccccCCCcCEEEccCCCCCCCcc----hhhhhhccccccCccEEEccccccccc----
Q 044980          199 SFLLNLVSCMVR---FHQLIPTSFIRLCKLTSIDFSSVKLSQDIS----QVLDIFSAYGTYALVSLILSHCQISAA----  267 (313)
Q Consensus       199 ~~~L~l~~n~~~---~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~l~~~~~~~~~~L~~L~Ls~n~l~~~----  267 (313)
                      .  +.+..|-.+   +..++...+..+.+|++|++++|.++....    ..+..|+     .|+.|.+..|-++..    
T Consensus       189 ~--vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~-----~lrEL~lnDClls~~G~~~  261 (388)
T COG5238         189 E--VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN-----LLRELRLNDCLLSNEGVKS  261 (388)
T ss_pred             e--EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc-----hhhhccccchhhccccHHH
Confidence            8  888777211   111233445677899999999999986443    3455566     789999999988754    


Q ss_pred             ----c--cCCCCCCEEEccCCccccccCccc-------cCCCCCCEeeCCCCcCcc
Q 044980          268 ----L--GKLSSLRNLDFSLNMLNGSIPLSL-------GQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       268 ----~--~~~~~L~~L~l~~n~l~~~ip~~l-------~~l~~L~~L~l~~n~l~~  310 (313)
                          +  ...++|..|-..+|.+.+.+...+       ..+|-|..|.+.+|++..
T Consensus       262 v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         262 VLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             HHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence                2  346789999999999876444321       346788889999998864

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.78  E-value=8.7e-10  Score=100.48  Aligned_cols=124  Identities=30%  Similarity=0.234  Sum_probs=83.5

Q ss_pred             CCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchh-hccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980           72 FGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSW-LSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF  150 (313)
Q Consensus        72 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  150 (313)
                      +..++.+++..|.+.- +-..+..+..|..|++.+|.+    ..+.. +..+++|++|++++|.|+...+  +..+..|+
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i----~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~  143 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKI----EKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLK  143 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccch----hhcccchhhhhcchheeccccccccccc--hhhccchh
Confidence            4556666666666653 222356677888888888875    33444 6677888888888888876543  66677788


Q ss_pred             eeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCc-hhhhcCccccccccccccc
Q 044980          151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSP-GWLSKLNELSSFLLNLVSC  207 (313)
Q Consensus       151 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~~~L~l~~n  207 (313)
                      .|++++|.+. .+ ..+..+++|+.+++++|++...-+ . ...+..++.  +.+.+|
T Consensus       144 ~L~l~~N~i~-~~-~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~--l~l~~n  196 (414)
T KOG0531|consen  144 ELNLSGNLIS-DI-SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEE--LDLGGN  196 (414)
T ss_pred             hheeccCcch-hc-cCCccchhhhcccCCcchhhhhhhhh-hhhccchHH--HhccCC
Confidence            8888888877 22 234457788888888888774433 1 456667777  777766

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.77  E-value=4.6e-09  Score=68.43  Aligned_cols=60  Identities=30%  Similarity=0.375  Sum_probs=40.3

Q ss_pred             CCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCC
Q 044980          124 LLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQF  183 (313)
Q Consensus       124 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (313)
                      +|++|++++|.+....+.++..+++|++|++++|.++...+..|.++++|++|++++|++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            566666666666655555666777777777777777655556667777777777777653

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.77  E-value=7.2e-09  Score=67.51  Aligned_cols=56  Identities=38%  Similarity=0.536  Sum_probs=46.8

Q ss_pred             CccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcC
Q 044980          253 ALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF  308 (313)
Q Consensus       253 ~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l  308 (313)
                      +|+.|++++|+++..    |..+++|++|++++|.+....|..|..+++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            678888888887654    77888999999999999866667888999999999999875

...

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.70  E-value=2.5e-08  Score=59.75  Aligned_cols=40  Identities=43%  Similarity=0.853  Sum_probs=30.6

Q ss_pred             HHhHHHHHHhhhhcc-cCCCCCCCCCCCC-CCCcccCceEec
Q 044980           18 ESERGALLKLKRNLK-DLSNCLASWNIGD-GDCCKWVGNFCN   57 (313)
Q Consensus        18 ~~~~~~l~~~~~~~~-~~~~~~~~w~~~~-~~~c~~~~v~c~   57 (313)
                      +.|++||++||.++. +|...+.+|+... .++|+|.||.|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            579999999999998 5778889999732 799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.70  E-value=3.2e-08  Score=97.02  Aligned_cols=108  Identities=21%  Similarity=0.209  Sum_probs=69.7

Q ss_pred             CCCCcceecCCCCc--ccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcC
Q 044980           71 PFGYLKYSDAEDDD--HYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLR  147 (313)
Q Consensus        71 ~l~~L~~L~l~~n~--~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  147 (313)
                      ..++|++|-+..|.  +.......|..++.|++|||++|.   ..+.+| .++++-+|++|+++++.+. .+|..+.++.
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~---~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk  618 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS---SLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLK  618 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC---ccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHH
Confidence            44556666666664  222222335667777777777765   344555 5777777777777777776 3466677777


Q ss_pred             ccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCC
Q 044980          148 HLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQ  182 (313)
Q Consensus       148 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~  182 (313)
                      +|.+|++..+.....+|.....+.+|++|.+..-.
T Consensus       619 ~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  619 KLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hhheeccccccccccccchhhhcccccEEEeeccc
Confidence            77777777776554555555667777777776654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.69  E-value=3e-09  Score=88.76  Aligned_cols=207  Identities=18%  Similarity=0.198  Sum_probs=123.1

Q ss_pred             CCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccC-cCCCCCCCCCCCC
Q 044980           95 NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQ-GKIPSTLGNLTSL  173 (313)
Q Consensus        95 ~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~~l~~L  173 (313)
                      .+++++++||.+|.++-+......+.+++.|++|+++.|.+...+...+..+.+|++|.|.+..+. ......+..+|.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            467889999999987333222224667899999999999887665443345567888888887765 2344556678888


Q ss_pred             CEEEccCCCCCCC-Cc-hhhhcC-cccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcc-hhhhhhccc
Q 044980          174 KQIDLSHNQFNFT-SP-GWLSKL-NELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDIS-QVLDIFSAY  249 (313)
Q Consensus       174 ~~L~l~~n~l~~~-~p-~~~~~l-~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~~  249 (313)
                      +.|+++.|.+.-. +. .....+ +.+..  +....|.......+-.--.-++++..+.+..|.+..... +....++  
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~t--lh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p--  224 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLT--LHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFP--  224 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhh--hhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCC--
Confidence            8888888843210 00 000001 12223  333333110000000111123456667777776543221 1223333  


Q ss_pred             cccCccEEEccccccccc-----ccCCCCCCEEEccCCccccccCc------cccCCCCCCEeeCCCCcCcc
Q 044980          250 GTYALVSLILSHCQISAA-----LGKLSSLRNLDFSLNMLNGSIPL------SLGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       250 ~~~~L~~L~Ls~n~l~~~-----~~~~~~L~~L~l~~n~l~~~ip~------~l~~l~~L~~L~l~~n~l~~  310 (313)
                         .+..|+|+.+++.++     +..++.|+.|.+++|.+.+.+..      .++.+++++.|+=+  +++.
T Consensus       225 ---~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs--kIss  291 (418)
T KOG2982|consen  225 ---SLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS--KISS  291 (418)
T ss_pred             ---cchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc--ccch
Confidence               677888999998877     78889999999999988753332      34667888887755  5543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.63  E-value=1.9e-08  Score=98.63  Aligned_cols=153  Identities=23%  Similarity=0.181  Sum_probs=106.2

Q ss_pred             CCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCee
Q 044980           73 GYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI  152 (313)
Q Consensus        73 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  152 (313)
                      ...+...+.+|.+.. ++.. ..++.|++|-+..|..-........|..++.|.+||+++|.-.+..|..++.+-+|++|
T Consensus       523 ~~~rr~s~~~~~~~~-~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEH-IAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             hheeEEEEeccchhh-ccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            345555555555542 2222 24567889988888510012222247789999999999988778889999999999999


Q ss_pred             eccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEc
Q 044980          153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDF  230 (313)
Q Consensus       153 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l  230 (313)
                      +++++.+. .+|..+.++++|.+|++..+.....+|.....+.+|++  +.+...........-..+.++.+|+.+..
T Consensus       601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~--L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV--LRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccE--EEeeccccccchhhHHhhhcccchhhhee
Confidence            99999998 89999999999999999998876666777777899999  44433211222333344455555555554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.61  E-value=6.2e-09  Score=94.90  Aligned_cols=218  Identities=28%  Similarity=0.279  Sum_probs=140.5

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF  150 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  150 (313)
                      .+++|+.+++..|.+..... .+..+++|++|++++|.+    ..+..+..++.|+.|++++|.+....  .+..+..|+
T Consensus        93 ~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I----~~i~~l~~l~~L~~L~l~~N~i~~~~--~~~~l~~L~  165 (414)
T KOG0531|consen   93 KLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKI----TKLEGLSTLTLLKELNLSGNLISDIS--GLESLKSLK  165 (414)
T ss_pred             cccceeeeeccccchhhccc-chhhhhcchheecccccc----ccccchhhccchhhheeccCcchhcc--CCccchhhh
Confidence            67889999999999886432 266789999999999997    44555777888999999999987642  255688899


Q ss_pred             eeeccCcccCcCCCCC-CCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCC--CcCE
Q 044980          151 FIVLSYNQFQGKIPST-LGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLC--KLTS  227 (313)
Q Consensus       151 ~L~L~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~--~L~~  227 (313)
                      .+++++|.+...-+ . ...+.+++.+++.+|.+...-  .+..+..+..  +.+..|  .+...-  .+..+.  +|+.
T Consensus       166 ~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~--~~l~~n--~i~~~~--~l~~~~~~~L~~  236 (414)
T KOG0531|consen  166 LLDLSYNRIVDIEN-DELSELISLEELDLGGNSIREIE--GLDLLKKLVL--LSLLDN--KISKLE--GLNELVMLHLRE  236 (414)
T ss_pred             cccCCcchhhhhhh-hhhhhccchHHHhccCCchhccc--chHHHHHHHH--hhcccc--cceecc--CcccchhHHHHH
Confidence            99999999984333 2 467888999999999876322  1222233333  344444  211111  111112  3778


Q ss_pred             EEccCCCCCCCcchhhhhhccccccCccEEEccccccccc--ccCCCCCCEEEccCCcccc---ccCcc-ccCCCCCCEe
Q 044980          228 IDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--LGKLSSLRNLDFSLNMLNG---SIPLS-LGQISHLEYL  301 (313)
Q Consensus       228 L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~~---~ip~~-l~~l~~L~~L  301 (313)
                      +++++|.+... +..+..+.     .+..+++..|++...  +.....+..+....|.+..   ..... ....+.++.+
T Consensus       237 l~l~~n~i~~~-~~~~~~~~-----~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (414)
T KOG0531|consen  237 LYLSGNRISRS-PEGLENLK-----NLPVLDLSSNRISNLEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL  310 (414)
T ss_pred             HhcccCccccc-cccccccc-----cccccchhhccccccccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence            88888877643 13333444     677778877777665  5555666666666666552   11111 3445566777


Q ss_pred             eCCCCcCcc
Q 044980          302 DLSNNKFVT  310 (313)
Q Consensus       302 ~l~~n~l~~  310 (313)
                      .+.+|.+..
T Consensus       311 ~~~~~~~~~  319 (414)
T KOG0531|consen  311 TLELNPIRK  319 (414)
T ss_pred             ccccCcccc
Confidence            777666543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.49  E-value=1.1e-07  Score=79.52  Aligned_cols=209  Identities=16%  Similarity=0.122  Sum_probs=127.6

Q ss_pred             CCCCcEeeccCCCCCCCCCCchhhc-cCCCCCEEEcCCccCCC--CCchhhhhcCccCeeeccCcccCcCCCCCCCCCCC
Q 044980           96 LSNLQYLDLSWIDCRLHVDSLSWLS-SLLLLEHIDLGQVHLGK--ASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTS  172 (313)
Q Consensus        96 l~~L~~L~L~~n~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~  172 (313)
                      ...+..|.+.++.+. ..+.+..++ .++.++.+|+.+|.++.  .+...+.+++.|++|+++.|++...+...-....+
T Consensus        44 ~ra~ellvln~~~id-~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n  122 (418)
T KOG2982|consen   44 LRALELLVLNGSIID-NEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN  122 (418)
T ss_pred             ccchhhheecCCCCC-cchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence            334445555555542 123333343 57899999999999974  33345678999999999999987443322235678


Q ss_pred             CCEEEccCCCCC-CCCchhhhcCccccccccccccccccccccccc--ccccC-CCcCEEEccCCCCCCCcchhhhhhcc
Q 044980          173 LKQIDLSHNQFN-FTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPT--SFIRL-CKLTSIDFSSVKLSQDISQVLDIFSA  248 (313)
Q Consensus       173 L~~L~l~~n~l~-~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~--~~~~~-~~L~~L~l~~n~l~~~~~~~l~~~~~  248 (313)
                      |+.|.|++..+. ......+..++.+++  ++++.|  +++....+  ..... +.++++.+..|......  ....+ .
T Consensus       123 l~~lVLNgT~L~w~~~~s~l~~lP~vte--lHmS~N--~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~--~~~~l-~  195 (418)
T KOG2982|consen  123 LRVLVLNGTGLSWTQSTSSLDDLPKVTE--LHMSDN--SLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWL--NKNKL-S  195 (418)
T ss_pred             eEEEEEcCCCCChhhhhhhhhcchhhhh--hhhccc--hhhhhccccccccccchhhhhhhcCCcHHHHHH--HHHhH-H
Confidence            999999998874 233345667888888  888887  22221110  01111 12333333322211000  00000 0


Q ss_pred             ccccCccEEEccccccccc-----ccCCCCCCEEEccCCcccc-ccCccccCCCCCCEeeCCCCcCcccc
Q 044980          249 YGTYALVSLILSHCQISAA-----LGKLSSLRNLDFSLNMLNG-SIPLSLGQISHLEYLDLSNNKFVTKK  312 (313)
Q Consensus       249 ~~~~~L~~L~Ls~n~l~~~-----~~~~~~L~~L~l~~n~l~~-~ip~~l~~l~~L~~L~l~~n~l~~~~  312 (313)
                      .-++++..+.+..|.+...     ...++.+..|+|+.|+|.. .--+.+.+++.|..|.+++|.+...+
T Consensus       196 r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  196 RIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             hhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence            1133778888888876554     5667778889999998873 12235678899999999999887654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.34  E-value=1.7e-08  Score=93.56  Aligned_cols=128  Identities=26%  Similarity=0.187  Sum_probs=83.8

Q ss_pred             CCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccc
Q 044980          124 LLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLN  203 (313)
Q Consensus       124 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~  203 (313)
                      .|.+.+.++|.+.. ...++.-++.|+.|+|+.|+++.. . .+..+++|++||+++|.+. .+|..-..-..|+.  |.
T Consensus       165 ~L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~--L~  238 (1096)
T KOG1859|consen  165 KLATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQL--LN  238 (1096)
T ss_pred             hHhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhh-H-HHHhcccccccccccchhc-cccccchhhhhhee--ee
Confidence            45566666776643 244566677788888888888733 2 6677888888888888876 45542222234777  77


Q ss_pred             ccccccccccccccccccCCCcCEEEccCCCCCCCc-chhhhhhccccccCccEEEcccccccc
Q 044980          204 LVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDI-SQVLDIFSAYGTYALVSLILSHCQISA  266 (313)
Q Consensus       204 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~~~~~~L~~L~Ls~n~l~~  266 (313)
                      +.+|  .++.  -..+.++.+|+.||+++|-+.+.- -..+..+.     .|+.|+|.||.+-.
T Consensus       239 lrnN--~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs-----~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  239 LRNN--ALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLS-----SLIVLWLEGNPLCC  293 (1096)
T ss_pred             eccc--HHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHH-----HHHHHhhcCCcccc
Confidence            7777  2222  124567788888888888876531 12345555     68888888887653

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.33  E-value=1.1e-08  Score=94.71  Aligned_cols=175  Identities=28%  Similarity=0.302  Sum_probs=119.0

Q ss_pred             hhccCCCCCEEEcCCccCCCCCchhhhhcCc-cCeeeccCcccC----------cCCCCCCCCCCCCCEEEccCCCCCCC
Q 044980          118 WLSSLLLLEHIDLGQVHLGKASDCWIYSLRH-LFFIVLSYNQFQ----------GKIPSTLGNLTSLKQIDLSHNQFNFT  186 (313)
Q Consensus       118 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~~~----------~~~~~~~~~l~~L~~L~l~~n~l~~~  186 (313)
                      .+..++.|+.|.+.++.+...  ..+..+.. |++|... |.+.          |.+...+. -..|...+.+.|.+. .
T Consensus       104 ~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~L~-~  178 (1096)
T KOG1859|consen  104 SIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSPV-WNKLATASFSYNRLV-L  178 (1096)
T ss_pred             eeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccchh-hhhHhhhhcchhhHH-h
Confidence            466778899999999887641  12333332 6665433 3221          12222221 134778888888887 4


Q ss_pred             CchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEcccccccc
Q 044980          187 SPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA  266 (313)
Q Consensus       187 ~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~  266 (313)
                      +..++.-++.++.  |++++|  .+...  +.+..+++|++||+++|.+... |. +..   ..+ +|+.|.+++|.++.
T Consensus       179 mD~SLqll~ale~--LnLshN--k~~~v--~~Lr~l~~LkhLDlsyN~L~~v-p~-l~~---~gc-~L~~L~lrnN~l~t  246 (1096)
T KOG1859|consen  179 MDESLQLLPALES--LNLSHN--KFTKV--DNLRRLPKLKHLDLSYNCLRHV-PQ-LSM---VGC-KLQLLNLRNNALTT  246 (1096)
T ss_pred             HHHHHHHHHHhhh--hccchh--hhhhh--HHHHhcccccccccccchhccc-cc-cch---hhh-hheeeeecccHHHh
Confidence            5567777888999  999998  43332  3677788999999999998743 32 111   112 69999999999988


Q ss_pred             c--ccCCCCCCEEEccCCccccc-cCccccCCCCCCEeeCCCCcCc
Q 044980          267 A--LGKLSSLRNLDFSLNMLNGS-IPLSLGQISHLEYLDLSNNKFV  309 (313)
Q Consensus       267 ~--~~~~~~L~~L~l~~n~l~~~-ip~~l~~l~~L~~L~l~~n~l~  309 (313)
                      .  +.++++|+.||+++|-+.+- --..+..+..|+.|+|.||.+-
T Consensus       247 L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  247 LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            7  88899999999999988751 1112456778899999999874

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=9.8e-09  Score=85.75  Aligned_cols=176  Identities=23%  Similarity=0.214  Sum_probs=103.3

Q ss_pred             CCCEEEcCCccCCCC-CchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCC-CCCC-CchhhhcCcccccc
Q 044980          124 LLEHIDLGQVHLGKA-SDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQ-FNFT-SPGWLSKLNELSSF  200 (313)
Q Consensus       124 ~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~p~~~~~l~~L~~~  200 (313)
                      .|+++|++...++.. ....+..+.+|+.|.+.++++...+...+..-.+|+.++++.+. ++.. ..-.+.+++.|++ 
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~-  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE-  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh-
Confidence            477777777766532 12235666777777777777776666666667777777777765 3322 1124566777777 


Q ss_pred             ccccccccccccccccc-cccc-CCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccc-cccc----ccCCCC
Q 044980          201 LLNLVSCMVRFHQLIPT-SFIR-LCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQ-ISAA----LGKLSS  273 (313)
Q Consensus       201 ~L~l~~n~~~~~~~~~~-~~~~-~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~-l~~~----~~~~~~  273 (313)
                       |+++.|  .+....-. .+.. -.+|+.|+++++.-.-. -..+..+. ..++.|..||||.|. ++..    +.+++.
T Consensus       265 -LNlsWc--~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~-~sh~~tL~-~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~  339 (419)
T KOG2120|consen  265 -LNLSWC--FLFTEKVTVAVAHISETLTQLNLSGYRRNLQ-KSHLSTLV-RRCPNLVHLDLSDSVMLKNDCFQEFFKFNY  339 (419)
T ss_pred             -cCchHh--hccchhhhHHHhhhchhhhhhhhhhhHhhhh-hhHHHHHH-HhCCceeeeccccccccCchHHHHHHhcch
Confidence             777766  21111100 0111 13566777766542210 01111111 123488888888775 3333    777888


Q ss_pred             CCEEEccCCccccccCc---cccCCCCCCEeeCCCCc
Q 044980          274 LRNLDFSLNMLNGSIPL---SLGQISHLEYLDLSNNK  307 (313)
Q Consensus       274 L~~L~l~~n~l~~~ip~---~l~~l~~L~~L~l~~n~  307 (313)
                      |++|.++.|...  +|.   .+...|.|.+||+.++-
T Consensus       340 L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  340 LQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             heeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence            899988888642  444   45667889999988763

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=3.4e-08  Score=82.60  Aligned_cols=177  Identities=26%  Similarity=0.209  Sum_probs=118.6

Q ss_pred             CCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcc-cCc-CCCCCCCCCCCC
Q 044980           97 SNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQ-FQG-KIPSTLGNLTSL  173 (313)
Q Consensus        97 ~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-~~~-~~~~~~~~l~~L  173 (313)
                      +.|++|||++..+  ....+. -++.|.+|+.+.+.++++.+.+...++.-.+|+.++++.+. ++. .....+.+++.|
T Consensus       185 sRlq~lDLS~s~i--t~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  185 SRLQHLDLSNSVI--TVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL  262 (419)
T ss_pred             hhhHHhhcchhhe--eHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence            4688889887765  222222 46778899999999999988887778888889999998763 331 112335678889


Q ss_pred             CEEEccCCCCCCCCchh-hhc-Ccccccccccccccccccccc-cccccccCCCcCEEEccCCC-CCCCcchhhhhhccc
Q 044980          174 KQIDLSHNQFNFTSPGW-LSK-LNELSSFLLNLVSCMVRFHQL-IPTSFIRLCKLTSIDFSSVK-LSQDISQVLDIFSAY  249 (313)
Q Consensus       174 ~~L~l~~n~l~~~~p~~-~~~-l~~L~~~~L~l~~n~~~~~~~-~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~~  249 (313)
                      ..|+++-|.+....-.. +.. -++|..  |+++++-..+... +.--...++++.+||+++|. +.......+..++  
T Consensus       263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~--LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~--  338 (419)
T KOG2120|consen  263 DELNLSWCFLFTEKVTVAVAHISETLTQ--LNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN--  338 (419)
T ss_pred             hhcCchHhhccchhhhHHHhhhchhhhh--hhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc--
Confidence            99999988875433221 111 256667  7777762222111 12223557789999998775 4444445566666  


Q ss_pred             cccCccEEEccccccccc-----ccCCCCCCEEEccCC
Q 044980          250 GTYALVSLILSHCQISAA-----LGKLSSLRNLDFSLN  282 (313)
Q Consensus       250 ~~~~L~~L~Ls~n~l~~~-----~~~~~~L~~L~l~~n  282 (313)
                         .|++|.++.|..-..     +...+.|.+||+-++
T Consensus       339 ---~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  339 ---YLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             ---hheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence               899999999874333     778889999998764

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.22  E-value=1.3e-06  Score=52.44  Aligned_cols=38  Identities=37%  Similarity=0.577  Sum_probs=29.1

Q ss_pred             CCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCcc
Q 044980          272 SSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       272 ~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~  310 (313)
                      ++|++|++++|+|+ .+|..+.++++|+.|++++|+++.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            46888888888888 677778888888888888888763

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.16  E-value=1.6e-06  Score=71.92  Aligned_cols=213  Identities=16%  Similarity=0.148  Sum_probs=122.3

Q ss_pred             ccCCCCCcEeeccCCCCCCCCCCchh----hccCCCCCEEEcCCccCC---CCCch-------hhhhcCccCeeeccCcc
Q 044980           93 VGNLSNLQYLDLSWIDCRLHVDSLSW----LSSLLLLEHIDLGQVHLG---KASDC-------WIYSLRHLFFIVLSYNQ  158 (313)
Q Consensus        93 l~~l~~L~~L~L~~n~~~~~~~~~~~----~~~l~~L~~L~l~~n~l~---~~~~~-------~~~~l~~L~~L~L~~n~  158 (313)
                      +.-+..+++++|++|-+  ......+    +.+-.+|+..+++.-...   ..+++       .+..+++|+..+|+.|-
T Consensus        26 l~~~d~~~evdLSGNti--gtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA  103 (388)
T COG5238          26 LEMMDELVEVDLSGNTI--GTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA  103 (388)
T ss_pred             HHhhcceeEEeccCCcc--cHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence            44478899999999986  2222223    445678888888764332   22222       24567889999999999


Q ss_pred             cCcCCCCC----CCCCCCCCEEEccCCCCCCCCchhhh-------------cCccccccccccccccccccc----cccc
Q 044980          159 FQGKIPST----LGNLTSLKQIDLSHNQFNFTSPGWLS-------------KLNELSSFLLNLVSCMVRFHQ----LIPT  217 (313)
Q Consensus       159 ~~~~~~~~----~~~l~~L~~L~l~~n~l~~~~p~~~~-------------~l~~L~~~~L~l~~n~~~~~~----~~~~  217 (313)
                      |....|+.    +..-+.|++|.|++|.+...--.-++             +-+.|+.  +....|  ++..    ....
T Consensus       104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~--vicgrN--Rlengs~~~~a~  179 (388)
T COG5238         104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEV--VICGRN--RLENGSKELSAA  179 (388)
T ss_pred             cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceE--EEeccc--hhccCcHHHHHH
Confidence            88766653    35667899999999987522111111             2244444  444443  1111    0111


Q ss_pred             ccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc--------ccCCCCCCEEEccCCccccccC
Q 044980          218 SFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--------LGKLSSLRNLDFSLNMLNGSIP  289 (313)
Q Consensus       218 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--------~~~~~~L~~L~l~~n~l~~~ip  289 (313)
                      .+.....|+++.+..|.|.-.....+.......+.+|+.|||+.|-++-.        +...+.|++|.+..|.++....
T Consensus       180 ~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~  259 (388)
T COG5238         180 LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGV  259 (388)
T ss_pred             HHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccH
Confidence            23333567777777777664333333222222233677777777776533        4445557777777777664333


Q ss_pred             cccc------CCCCCCEeeCCCCcCccc
Q 044980          290 LSLG------QISHLEYLDLSNNKFVTK  311 (313)
Q Consensus       290 ~~l~------~l~~L~~L~l~~n~l~~~  311 (313)
                      .++-      ..|+|..|-..+|...|.
T Consensus       260 ~~v~~~f~e~~~p~l~~L~~~Yne~~~~  287 (388)
T COG5238         260 KSVLRRFNEKFVPNLMPLPGDYNERRGG  287 (388)
T ss_pred             HHHHHHhhhhcCCCccccccchhhhcCc
Confidence            3221      246677777777766653

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.89  E-value=6.2e-07  Score=66.75  Aligned_cols=103  Identities=14%  Similarity=0.143  Sum_probs=57.8

Q ss_pred             cceecCCCCcccccccc---cccCCCCCcEeeccCCCCCCCCCCch-hhc-cCCCCCEEEcCCccCCCCCchhhhhcCcc
Q 044980           75 LKYSDAEDDDHYMRSKL---VVGNLSNLQYLDLSWIDCRLHVDSLS-WLS-SLLLLEHIDLGQVHLGKASDCWIYSLRHL  149 (313)
Q Consensus        75 L~~L~l~~n~~~~~~~~---~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  149 (313)
                      +..++++++.+.. +++   .+....+|+..+|++|.+    ..+| .|. +++.++++++.+|.++.. |..+..++.|
T Consensus        29 ~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~f----k~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aL  102 (177)
T KOG4579|consen   29 LHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGF----KKFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPAL  102 (177)
T ss_pred             hhhcccccchhhH-HHHHHHHHhCCceEEEEecccchh----hhCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHh
Confidence            4455555555431 222   233445666667776664    3333 232 345666666666666654 4446666666


Q ss_pred             CeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCC
Q 044980          150 FFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFN  184 (313)
Q Consensus       150 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (313)
                      +.|+++.|++. ..|..+..+.++..|+..+|.+.
T Consensus       103 r~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  103 RSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             hhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            66666666666 55555555666666666666554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.89  E-value=6.3e-07  Score=66.72  Aligned_cols=81  Identities=27%  Similarity=0.334  Sum_probs=37.3

Q ss_pred             cCeeeccCcccCcCCCCC---CCCCCCCCEEEccCCCCCCCCchhh-hcCcccccccccccccccccccccccccccCCC
Q 044980          149 LFFIVLSYNQFQGKIPST---LGNLTSLKQIDLSHNQFNFTSPGWL-SKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCK  224 (313)
Q Consensus       149 L~~L~L~~n~~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~  224 (313)
                      +..++|+.|++. .++..   +.....|+..++++|.+.. +|..| ...+.++.  +++++|  .+. .+|..+..++.
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~--lNl~~n--eis-dvPeE~Aam~a  101 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATT--LNLANN--EIS-DVPEELAAMPA  101 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhh--hhcchh--hhh-hchHHHhhhHH
Confidence            455666666554 22322   2233445556666666653 33322 22334444  444444  222 14444444445


Q ss_pred             cCEEEccCCCCC
Q 044980          225 LTSIDFSSVKLS  236 (313)
Q Consensus       225 L~~L~l~~n~l~  236 (313)
                      |+.|+++.|.+.
T Consensus       102 Lr~lNl~~N~l~  113 (177)
T KOG4579|consen  102 LRSLNLRFNPLN  113 (177)
T ss_pred             hhhcccccCccc
Confidence            555555554444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.81  E-value=1.6e-05  Score=47.61  Aligned_cols=36  Identities=36%  Similarity=0.529  Sum_probs=19.1

Q ss_pred             ccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCC
Q 044980          148 HLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFN  184 (313)
Q Consensus       148 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (313)
                      +|++|++++|+++ .+|..+.++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 44444555666666666666554

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.55  E-value=0.00014  Score=57.92  Aligned_cols=82  Identities=21%  Similarity=0.207  Sum_probs=50.0

Q ss_pred             CCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCc--CCCCCCCCCCCCCE
Q 044980           98 NLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQG--KIPSTLGNLTSLKQ  175 (313)
Q Consensus        98 ~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~  175 (313)
                      ....+||++|.+    ..++.|..++.|.+|.+.+|+|+..-|.--..+++|..|.+.+|.+..  .+ ..+..+|+|++
T Consensus        43 ~~d~iDLtdNdl----~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~  117 (233)
T KOG1644|consen   43 QFDAIDLTDNDL----RKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEY  117 (233)
T ss_pred             ccceecccccch----hhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-chhccCCccce
Confidence            445667777664    334446666777777777777766655544455667777777776651  11 12345667777


Q ss_pred             EEccCCCCC
Q 044980          176 IDLSHNQFN  184 (313)
Q Consensus       176 L~l~~n~l~  184 (313)
                      |.+-+|..+
T Consensus       118 Ltll~Npv~  126 (233)
T KOG1644|consen  118 LTLLGNPVE  126 (233)
T ss_pred             eeecCCchh
Confidence            777776654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.55  E-value=3.8e-05  Score=73.87  Aligned_cols=133  Identities=22%  Similarity=0.209  Sum_probs=78.2

Q ss_pred             CccCeeeccCcccC-cCCCCCCC-CCCCCCEEEccCCCCC-CCCchhhhcCcccccccccccccccccccccccccccCC
Q 044980          147 RHLFFIVLSYNQFQ-GKIPSTLG-NLTSLKQIDLSHNQFN-FTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLC  223 (313)
Q Consensus       147 ~~L~~L~L~~n~~~-~~~~~~~~-~l~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~  223 (313)
                      .+|++|++++...- ...|..++ .+|.|+.|.+.+-.+. ..+.....++++|..  |++++.  ++..+  ..++.++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~s--LDIS~T--nI~nl--~GIS~Lk  195 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRS--LDISGT--NISNL--SGISRLK  195 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccce--eecCCC--CccCc--HHHhccc
Confidence            34888888775432 22233333 4688888888876653 233445566777777  777775  33322  4566777


Q ss_pred             CcCEEEccCCCCCC-CcchhhhhhccccccCccEEEccccccccc----------ccCCCCCCEEEccCCccccccCc
Q 044980          224 KLTSIDFSSVKLSQ-DISQVLDIFSAYGTYALVSLILSHCQISAA----------LGKLSSLRNLDFSLNMLNGSIPL  290 (313)
Q Consensus       224 ~L~~L~l~~n~l~~-~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----------~~~~~~L~~L~l~~n~l~~~ip~  290 (313)
                      +|++|.+.+=.+.. ..-..+..+.     +|+.||+|.......          -..+|.|+.||.|++.+.+.+-+
T Consensus       196 nLq~L~mrnLe~e~~~~l~~LF~L~-----~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le  268 (699)
T KOG3665|consen  196 NLQVLSMRNLEFESYQDLIDLFNLK-----KLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE  268 (699)
T ss_pred             cHHHHhccCCCCCchhhHHHHhccc-----CCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence            77777776666553 2223445555     777777776554332          33466777777777666654433

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.50  E-value=0.00063  Score=60.96  Aligned_cols=136  Identities=16%  Similarity=0.202  Sum_probs=79.5

Q ss_pred             hccCCCCCEEEcCCccCCCCCchhhhhcC-ccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccc
Q 044980          119 LSSLLLLEHIDLGQVHLGKASDCWIYSLR-HLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNEL  197 (313)
Q Consensus       119 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  197 (313)
                      +..+.+++.|++++|.+... |    .++ +|++|.++++.--..+|..+  .++|++|++++|.....+|.      .|
T Consensus        48 ~~~~~~l~~L~Is~c~L~sL-P----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESL-P----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCccc-C----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------cc
Confidence            55578899999999977654 3    233 49999998854433666554  35799999999843335554      35


Q ss_pred             ccccccccccccccccccccccccCCCcCEEEccCCCCC--CCcchhhhhhccccccCccEEEccccccccccc-CCCCC
Q 044980          198 SSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLS--QDISQVLDIFSAYGTYALVSLILSHCQISAALG-KLSSL  274 (313)
Q Consensus       198 ~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~L  274 (313)
                      +.  |.+..+...--..+|.      +|+.|.+.+++..  ..+|.   .+|    ++|+.|++++|....... -..+|
T Consensus       115 e~--L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~---~LP----sSLk~L~Is~c~~i~LP~~LP~SL  179 (426)
T PRK15386        115 RS--LEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN---LIS----PSLKTLSLTGCSNIILPEKLPESL  179 (426)
T ss_pred             ce--EEeCCCCCcccccCcc------hHhheecccccccccccccc---ccC----CcccEEEecCCCcccCcccccccC
Confidence            55  4444431111122443      4666666433211  11111   122    178888888877543322 22478


Q ss_pred             CEEEccCC
Q 044980          275 RNLDFSLN  282 (313)
Q Consensus       275 ~~L~l~~n  282 (313)
                      +.|+++.+
T Consensus       180 k~L~ls~n  187 (426)
T PRK15386        180 QSITLHIE  187 (426)
T ss_pred             cEEEeccc
Confidence            88888776

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.34  E-value=7.7e-05  Score=71.81  Aligned_cols=151  Identities=21%  Similarity=0.164  Sum_probs=98.3

Q ss_pred             CCCCEEEcCCccC-CCCCchhh-hhcCccCeeeccCcccCc-CCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccc
Q 044980          123 LLLEHIDLGQVHL-GKASDCWI-YSLRHLFFIVLSYNQFQG-KIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSS  199 (313)
Q Consensus       123 ~~L~~L~l~~n~l-~~~~~~~~-~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~  199 (313)
                      .+|++|++++... ....|..+ ..+|.|+.|.+++-.+.. .+.....++|+|..||+++..++..  ..++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            6899999988643 33333323 357889999999877652 2334456789999999999998744  56888999998


Q ss_pred             ccccccccccccccccccccccCCCcCEEEccCCCCCCCc--chhhhhhccccccCccEEEccccccccc-----ccCCC
Q 044980          200 FLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDI--SQVLDIFSAYGTYALVSLILSHCQISAA-----LGKLS  272 (313)
Q Consensus       200 ~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~l~~~~~~~~~~L~~L~Ls~n~l~~~-----~~~~~  272 (313)
                        |.+.+= .-.....-..+.++++|++||+|........  ....-... ...|.|+.||.|+..+...     +..-+
T Consensus       200 --L~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~-~~LpeLrfLDcSgTdi~~~~le~ll~sH~  275 (699)
T KOG3665|consen  200 --LSMRNL-EFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECG-MVLPELRFLDCSGTDINEEILEELLNSHP  275 (699)
T ss_pred             --HhccCC-CCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhc-ccCccccEEecCCcchhHHHHHHHHHhCc
Confidence              665442 0001112235677899999999988765432  22111111 1244999999999888876     33345


Q ss_pred             CCCEEEc
Q 044980          273 SLRNLDF  279 (313)
Q Consensus       273 ~L~~L~l  279 (313)
                      +|+.+-.
T Consensus       276 ~L~~i~~  282 (699)
T KOG3665|consen  276 NLQQIAA  282 (699)
T ss_pred             cHhhhhh
Confidence            5554443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.23  E-value=0.00061  Score=54.43  Aligned_cols=78  Identities=19%  Similarity=0.221  Sum_probs=41.4

Q ss_pred             CCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc-----ccCCCCCCEEEccCCcccc---ccCcccc
Q 044980          222 LCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA-----LGKLSSLRNLDFSLNMLNG---SIPLSLG  293 (313)
Q Consensus       222 ~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~-----~~~~~~L~~L~l~~n~l~~---~ip~~l~  293 (313)
                      +..|.+|.+.+|.|+..-|..-..++     +|..|.|.+|.+...     +..+++|++|.+-+|.+..   .---.+.
T Consensus        63 l~rL~tLll~nNrIt~I~p~L~~~~p-----~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~  137 (233)
T KOG1644|consen   63 LPRLHTLLLNNNRITRIDPDLDTFLP-----NLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLY  137 (233)
T ss_pred             ccccceEEecCCcceeeccchhhhcc-----ccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEE
Confidence            34556666666666544333333333     566666666655433     5556666666666666552   1111345


Q ss_pred             CCCCCCEeeCC
Q 044980          294 QISHLEYLDLS  304 (313)
Q Consensus       294 ~l~~L~~L~l~  304 (313)
                      .+|+|+.||+.
T Consensus       138 klp~l~~LDF~  148 (233)
T KOG1644|consen  138 KLPSLRTLDFQ  148 (233)
T ss_pred             ecCcceEeehh
Confidence            56666666654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.05  E-value=4.9e-05  Score=63.50  Aligned_cols=100  Identities=20%  Similarity=0.153  Sum_probs=51.8

Q ss_pred             CCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCc-hhhhhcCccC
Q 044980           72 FGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASD-CWIYSLRHLF  150 (313)
Q Consensus        72 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~  150 (313)
                      +.+.+.|++-++.+..+ . ...+++.|++|.|+-|++    ..+..+..|++|++|+|..|.|...-. .++.++++|+
T Consensus        18 l~~vkKLNcwg~~L~DI-s-ic~kMp~lEVLsLSvNkI----ssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI-S-ICEKMPLLEVLSLSVNKI----SSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR   91 (388)
T ss_pred             HHHhhhhcccCCCccHH-H-HHHhcccceeEEeecccc----ccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence            33455555555555432 1 133566666666666664    233345566666666666666644211 1445556666


Q ss_pred             eeeccCcccCcCCCC-----CCCCCCCCCEEE
Q 044980          151 FIVLSYNQFQGKIPS-----TLGNLTSLKQID  177 (313)
Q Consensus       151 ~L~L~~n~~~~~~~~-----~~~~l~~L~~L~  177 (313)
                      .|.|..|+=.|.-+.     .+.-+|+|++||
T Consensus        92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            666666654443332     223345555553

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.04  E-value=0.00057  Score=56.63  Aligned_cols=64  Identities=22%  Similarity=0.266  Sum_probs=33.5

Q ss_pred             hccCCCCCEEEcCCc--cCCCCCchhhhhcCccCeeeccCcccCcCCCC---CCCCCCCCCEEEccCCCCC
Q 044980          119 LSSLLLLEHIDLGQV--HLGKASDCWIYSLRHLFFIVLSYNQFQGKIPS---TLGNLTSLKQIDLSHNQFN  184 (313)
Q Consensus       119 ~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~---~~~~l~~L~~L~l~~n~l~  184 (313)
                      +..+++|+.|.++.|  ++.+..+.....+++|+++++++|++..  +.   .+..+.+|..|++.+|..+
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence            444556666666666  4443333334444666666666666551  11   1234455666666666544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.02  E-value=2.4e-05  Score=65.26  Aligned_cols=89  Identities=13%  Similarity=0.047  Sum_probs=59.9

Q ss_pred             CEEEEecCCCCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCch
Q 044980           62 HILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDC  141 (313)
Q Consensus        62 ~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  141 (313)
                      .+.+|++-.+|+.|++|.|+-|.++..-|  +..|+.|++|.|..|.|.. ..++.-+.+++.|+.|.|..|+-.+..+.
T Consensus        30 ~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LWL~ENPCc~~ag~  106 (388)
T KOG2123|consen   30 GLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLWLDENPCCGEAGQ  106 (388)
T ss_pred             CccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHhhccCCcccccch
Confidence            34444444478888888888888875433  6678888888888887611 12233577788888888888877655432


Q ss_pred             -----hhhhcCccCeee
Q 044980          142 -----WIYSLRHLFFIV  153 (313)
Q Consensus       142 -----~~~~l~~L~~L~  153 (313)
                           .+..+++|+.|+
T Consensus       107 nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen  107 NYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hHHHHHHHHcccchhcc
Confidence                 355677777775

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.87  E-value=0.00067  Score=56.24  Aligned_cols=59  Identities=20%  Similarity=0.220  Sum_probs=29.1

Q ss_pred             hcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCC--CCCCCCchhhhcCccccccccccccc
Q 044980          145 SLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHN--QFNFTSPGWLSKLNELSSFLLNLVSC  207 (313)
Q Consensus       145 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~p~~~~~l~~L~~~~L~l~~n  207 (313)
                      .+..|+.+.+.+..++. + ..+..+++|++|.++.|  ++.+.++.....+++|++  +.+++|
T Consensus        41 ~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~--l~ls~N  101 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKV--LNLSGN  101 (260)
T ss_pred             cccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeE--EeecCC
Confidence            34445566665555541 1 23445667777777777  344333333333344444  444444

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.86  E-value=0.0042  Score=55.80  Aligned_cols=139  Identities=17%  Similarity=0.102  Sum_probs=80.9

Q ss_pred             ccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCC
Q 044980           93 VGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTS  172 (313)
Q Consensus        93 l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~  172 (313)
                      +..+.+++.|++++|.+    ..+|.+  ...|++|.++++.--...|..+  ..+|++|.+++|.....+|.      .
T Consensus        48 ~~~~~~l~~L~Is~c~L----~sLP~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------s  113 (426)
T PRK15386         48 IEEARASGRLYIKDCDI----ESLPVL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------S  113 (426)
T ss_pred             HHHhcCCCEEEeCCCCC----cccCCC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------c
Confidence            55678999999999975    333422  2469999998754434445433  24699999999843224554      4


Q ss_pred             CCEEEccCCCCC--CCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhcccc
Q 044980          173 LKQIDLSHNQFN--FTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYG  250 (313)
Q Consensus       173 L~~L~l~~n~l~--~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~  250 (313)
                      |+.|++..+...  +.+|.      +|+.  |.+.++.......+|..  -..+|++|++++|.... .|+.+.  .   
T Consensus       114 Le~L~L~~n~~~~L~~LPs------sLk~--L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~-LP~~LP--~---  177 (426)
T PRK15386        114 VRSLEIKGSATDSIKNVPN------GLTS--LSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII-LPEKLP--E---  177 (426)
T ss_pred             cceEEeCCCCCcccccCcc------hHhh--eeccccccccccccccc--cCCcccEEEecCCCccc-Cccccc--c---
Confidence            777777766542  34444      3445  44432210000001110  11479999998887552 233222  1   


Q ss_pred             ccCccEEEccccc
Q 044980          251 TYALVSLILSHCQ  263 (313)
Q Consensus       251 ~~~L~~L~Ls~n~  263 (313)
                        +|+.|.++.+.
T Consensus       178 --SLk~L~ls~n~  188 (426)
T PRK15386        178 --SLQSITLHIEQ  188 (426)
T ss_pred             --cCcEEEecccc
Confidence              78888887663

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.32  E-value=0.00015  Score=63.78  Aligned_cols=13  Identities=15%  Similarity=0.324  Sum_probs=7.0

Q ss_pred             CCCcCEEEccCCC
Q 044980          222 LCKLTSIDFSSVK  234 (313)
Q Consensus       222 ~~~L~~L~l~~n~  234 (313)
                      ..+|+.+.+..+.
T Consensus       319 ~~~L~~l~l~~c~  331 (483)
T KOG4341|consen  319 CHNLQVLELSGCQ  331 (483)
T ss_pred             CCceEEEeccccc
Confidence            3455555555554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.26  E-value=0.007  Score=45.32  Aligned_cols=81  Identities=21%  Similarity=0.209  Sum_probs=29.8

Q ss_pred             ccCCCCCcEeeccCCCCCCCCCCch--hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCC
Q 044980           93 VGNLSNLQYLDLSWIDCRLHVDSLS--WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNL  170 (313)
Q Consensus        93 l~~l~~L~~L~L~~n~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l  170 (313)
                      |.++++|+.+.+... +    ..++  .|..++.|+.+.+..+ +.......+..+.+++.+.+.+ .+...-...|..+
T Consensus         8 F~~~~~l~~i~~~~~-~----~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~   80 (129)
T PF13306_consen    8 FYNCSNLESITFPNT-I----KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC   80 (129)
T ss_dssp             TTT-TT--EEEETST-------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred             HhCCCCCCEEEECCC-e----eEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence            445555555555432 1    1121  3445555555555543 3322222344454555555543 2221222334445


Q ss_pred             CCCCEEEccC
Q 044980          171 TSLKQIDLSH  180 (313)
Q Consensus       171 ~~L~~L~l~~  180 (313)
                      ++|+.+++..
T Consensus        81 ~~l~~i~~~~   90 (129)
T PF13306_consen   81 TNLKNIDIPS   90 (129)
T ss_dssp             TTECEEEETT
T ss_pred             ccccccccCc
Confidence            5555555543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.22  E-value=0.0022  Score=31.99  Aligned_cols=21  Identities=48%  Similarity=0.564  Sum_probs=17.2

Q ss_pred             CCCEEEccCCccccccCccccC
Q 044980          273 SLRNLDFSLNMLNGSIPLSLGQ  294 (313)
Q Consensus       273 ~L~~L~l~~n~l~~~ip~~l~~  294 (313)
                      +|++||+++|+++ .+|.+|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            4788999999998 88887654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.04  E-value=0.016  Score=43.37  Aligned_cols=106  Identities=18%  Similarity=0.192  Sum_probs=50.0

Q ss_pred             hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccc
Q 044980          118 WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNEL  197 (313)
Q Consensus       118 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  197 (313)
                      .|.++.+|+.+.+.. .+.......+..+.+|+.+.+..+ +...-...|.++++++.+.+.+ .+.......+..++++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            366677788887764 344443445677777888887764 4433345566676788887765 3322223345566777


Q ss_pred             ccccccccccccccccccccccccCCCcCEEEccC
Q 044980          198 SSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSS  232 (313)
Q Consensus       198 ~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~  232 (313)
                      +.  +.+..+   +..+-...+.+. +++.+.+..
T Consensus        84 ~~--i~~~~~---~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   84 KN--IDIPSN---ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             CE--EEETTT----BEEHTTTTTT--T--EEE-TT
T ss_pred             cc--cccCcc---ccEEchhhhcCC-CceEEEECC
Confidence            76  555443   222233344444 666666543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.04  E-value=9e-05  Score=68.31  Aligned_cols=83  Identities=22%  Similarity=0.195  Sum_probs=49.9

Q ss_pred             CcEeeccCCCCCCCCCCch----hhccCCCCCEEEcCCccCCCCCchhhhh----c-CccCeeeccCcccCcC----CCC
Q 044980           99 LQYLDLSWIDCRLHVDSLS----WLSSLLLLEHIDLGQVHLGKASDCWIYS----L-RHLFFIVLSYNQFQGK----IPS  165 (313)
Q Consensus        99 L~~L~L~~n~~~~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~----l-~~L~~L~L~~n~~~~~----~~~  165 (313)
                      +..+.|.+|.+  ......    .+.....|+.|++++|.+.+.....+..    . ..+++|.+..|.++..    +..
T Consensus        89 l~~L~L~~~~l--~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~  166 (478)
T KOG4308|consen   89 LLHLSLANNRL--GDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA  166 (478)
T ss_pred             HHHhhhhhCcc--ccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence            77788888876  333332    3556778888888888887544332221    1 2256666666666532    333


Q ss_pred             CCCCCCCCCEEEccCCCC
Q 044980          166 TLGNLTSLKQIDLSHNQF  183 (313)
Q Consensus       166 ~~~~l~~L~~L~l~~n~l  183 (313)
                      .+.....++.++++.|.+
T Consensus       167 ~L~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  167 VLEKNEHLTELDLSLNGL  184 (478)
T ss_pred             HHhcccchhHHHHHhccc
Confidence            444556677777777765

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.89  E-value=0.002  Score=59.80  Aligned_cols=113  Identities=21%  Similarity=0.116  Sum_probs=66.3

Q ss_pred             CCCCcceecCCCCccccc--ccccccCCCCCcEeeccCCCCCCCCCC---chhhccCCCCCEEEcCCcc-CCCCCchhhh
Q 044980           71 PFGYLKYSDAEDDDHYMR--SKLVVGNLSNLQYLDLSWIDCRLHVDS---LSWLSSLLLLEHIDLGQVH-LGKASDCWIY  144 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~L~~n~~~~~~~~---~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~  144 (313)
                      ..+.|+.+.+..+.-...  +......+++|++|+++.+........   ......+++|+.++++.+. ++...-..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            357777777776543322  233455678888888876311001111   1123446788888888877 5555444444


Q ss_pred             h-cCccCeeeccCcc-cCcC-CCCCCCCCCCCCEEEccCCCC
Q 044980          145 S-LRHLFFIVLSYNQ-FQGK-IPSTLGNLTSLKQIDLSHNQF  183 (313)
Q Consensus       145 ~-l~~L~~L~L~~n~-~~~~-~~~~~~~l~~L~~L~l~~n~l  183 (313)
                      . +++|++|.+.++. ++.. +-.....++.|++|+++.+..
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            3 6778888877666 3421 112234567788888888775

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.71  E-value=0.00019  Score=66.20  Aligned_cols=188  Identities=21%  Similarity=0.142  Sum_probs=101.3

Q ss_pred             cceecCCCCccccccc----ccccCCCCCcEeeccCCCCCCCCCCch----hhccC-CCCCEEEcCCccCCCCCch----
Q 044980           75 LKYSDAEDDDHYMRSK----LVVGNLSNLQYLDLSWIDCRLHVDSLS----WLSSL-LLLEHIDLGQVHLGKASDC----  141 (313)
Q Consensus        75 L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~L~~n~~~~~~~~~~----~~~~l-~~L~~L~l~~n~l~~~~~~----  141 (313)
                      +..+.+.+|.+.....    ..+....+|..|+++.|.+.  .....    .+... ..+++|++..+.++.....    
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~--~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~  166 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG--DEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA  166 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc--cHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence            7778888888765533    34556788999999999862  22222    23333 5677788888887765433    


Q ss_pred             hhhhcCccCeeeccCcccCc----CCCCCCC----CCCCCCEEEccCCCCCCCCc----hhhhcCcc-cccccccccccc
Q 044980          142 WIYSLRHLFFIVLSYNQFQG----KIPSTLG----NLTSLKQIDLSHNQFNFTSP----GWLSKLNE-LSSFLLNLVSCM  208 (313)
Q Consensus       142 ~~~~l~~L~~L~L~~n~~~~----~~~~~~~----~l~~L~~L~l~~n~l~~~~p----~~~~~l~~-L~~~~L~l~~n~  208 (313)
                      .+.....+++++++.|.+..    .++..+.    ...++++|.+.+|.++....    ..+...+. +.+  +++..|.
T Consensus       167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~e--l~l~~n~  244 (478)
T KOG4308|consen  167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRE--LDLASNK  244 (478)
T ss_pred             HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHH--HHHHhcC
Confidence            33345558888898888741    1223333    35678888888888763211    12223333 444  5555552


Q ss_pred             ccc--ccccccccccC-CCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc
Q 044980          209 VRF--HQLIPTSFIRL-CKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA  267 (313)
Q Consensus       209 ~~~--~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~  267 (313)
                      ..-  ...+...+..+ ..+++++++.|.+.......+..... .++.++.+.++.|.+...
T Consensus       245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~-~~~~l~~l~l~~n~l~~~  305 (478)
T KOG4308|consen  245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLV-SCRQLEELSLSNNPLTDY  305 (478)
T ss_pred             cchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHh-hhHHHHHhhcccCccccH
Confidence            110  01122223333 34556666666665443333322221 111555555555555443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.00  E-value=0.011  Score=29.37  Aligned_cols=18  Identities=39%  Similarity=0.578  Sum_probs=8.5

Q ss_pred             cCeeeccCcccCcCCCCCC
Q 044980          149 LFFIVLSYNQFQGKIPSTL  167 (313)
Q Consensus       149 L~~L~L~~n~~~~~~~~~~  167 (313)
                      |++|++++|.++ .+|..|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            445555555554 444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.65  E-value=0.023  Score=26.27  Aligned_cols=13  Identities=54%  Similarity=0.682  Sum_probs=5.3

Q ss_pred             CCCEEEccCCccc
Q 044980          273 SLRNLDFSLNMLN  285 (313)
Q Consensus       273 ~L~~L~l~~n~l~  285 (313)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4555555555544

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=94.28  E-value=0.0026  Score=56.33  Aligned_cols=200  Identities=21%  Similarity=0.140  Sum_probs=103.1

Q ss_pred             CCcceecCCCCccccccc--ccccCCCCCcEeeccCCCCCCCCCCchhh-ccCCCCCEEEcCCc-cCCCCCch-hhhhcC
Q 044980           73 GYLKYSDAEDDDHYMRSK--LVVGNLSNLQYLDLSWIDCRLHVDSLSWL-SSLLLLEHIDLGQV-HLGKASDC-WIYSLR  147 (313)
Q Consensus        73 ~~L~~L~l~~n~~~~~~~--~~l~~l~~L~~L~L~~n~~~~~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~  147 (313)
                      ..|+.|.+.+..-.+.-+  ....+++++++|.+.++.. ......-.+ ..+++|+++++..+ .++...-. ....++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~-iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~  216 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKK-ITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR  216 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhccee-ccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence            456677776655433322  2345788888888887762 222222233 35788999988874 34433322 234677


Q ss_pred             ccCeeeccCcc-cCcC-CCCCCCCCCCCCEEEccCCCCCCCCchhhh----cCcccccccccccccccccccc-cccccc
Q 044980          148 HLFFIVLSYNQ-FQGK-IPSTLGNLTSLKQIDLSHNQFNFTSPGWLS----KLNELSSFLLNLVSCMVRFHQL-IPTSFI  220 (313)
Q Consensus       148 ~L~~L~L~~n~-~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~----~l~~L~~~~L~l~~n~~~~~~~-~~~~~~  220 (313)
                      +|++++++.+. +++. +.....+++.++.+.+.+|.-.+  -..+.    .+..+.+  +++..+. .++.. +...-.
T Consensus       217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~--lnl~~c~-~lTD~~~~~i~~  291 (483)
T KOG4341|consen  217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILK--LNLQHCN-QLTDEDLWLIAC  291 (483)
T ss_pred             hHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--HHHHHHHhccChHhhc--cchhhhc-cccchHHHHHhh
Confidence            89999998875 3331 11223355566677666654211  11121    1223333  4443441 11111 222223


Q ss_pred             cCCCcCEEEccCCCCCC-CcchhhhhhccccccCccEEEccccc-cccc-----ccCCCCCCEEEccCC
Q 044980          221 RLCKLTSIDFSSVKLSQ-DISQVLDIFSAYGTYALVSLILSHCQ-ISAA-----LGKLSSLRNLDFSLN  282 (313)
Q Consensus       221 ~~~~L~~L~l~~n~l~~-~~~~~l~~~~~~~~~~L~~L~Ls~n~-l~~~-----~~~~~~L~~L~l~~n  282 (313)
                      .+.+|+.++.+++.-.+ .+-..++.    ++.+|+.+-+++|+ ++..     -.+.+.|+.+++..+
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~----~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~  356 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQ----HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC  356 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhc----CCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccc
Confidence            45678888887765432 22222322    23378888887776 3222     223345555555544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.69  E-value=0.033  Score=44.71  Aligned_cols=28  Identities=43%  Similarity=0.565  Sum_probs=13.7

Q ss_pred             CccEEEccccc-cccc----ccCCCCCCEEEcc
Q 044980          253 ALVSLILSHCQ-ISAA----LGKLSSLRNLDFS  280 (313)
Q Consensus       253 ~L~~L~Ls~n~-l~~~----~~~~~~L~~L~l~  280 (313)
                      +|+.|++++|. ||+.    +..+++|+.|.+.
T Consensus       152 ~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~  184 (221)
T KOG3864|consen  152 SLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY  184 (221)
T ss_pred             chheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence            55555555543 4433    4444555544444

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.51  E-value=0.058  Score=43.39  Aligned_cols=81  Identities=17%  Similarity=0.171  Sum_probs=46.0

Q ss_pred             cceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhcc-CCCCCEEEcCCc-cCCCCCchhhhhcCccCee
Q 044980           75 LKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSS-LLLLEHIDLGQV-HLGKASDCWIYSLRHLFFI  152 (313)
Q Consensus        75 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~-l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L  152 (313)
                      ++.+|.++..+...--+.+.+++.++.|.+.+|.- .....+..+++ .++|+.|++++| +|+...-.++..+++|+.|
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~-~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKY-FDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccc-hhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            44555555666655555566677777777776652 01111222222 467777777755 5665555556666666666


Q ss_pred             eccC
Q 044980          153 VLSY  156 (313)
Q Consensus       153 ~L~~  156 (313)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            6554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.06  E-value=0.27  Score=25.25  Aligned_cols=20  Identities=50%  Similarity=0.720  Sum_probs=14.6

Q ss_pred             CCCCCEEEccCCccccccCcc
Q 044980          271 LSSLRNLDFSLNMLNGSIPLS  291 (313)
Q Consensus       271 ~~~L~~L~l~~n~l~~~ip~~  291 (313)
                      +++|+.|+|++|++. .+|..
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            356888888888888 66654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.06  E-value=0.27  Score=25.25  Aligned_cols=20  Identities=50%  Similarity=0.720  Sum_probs=14.6

Q ss_pred             CCCCCEEEccCCccccccCcc
Q 044980          271 LSSLRNLDFSLNMLNGSIPLS  291 (313)
Q Consensus       271 ~~~L~~L~l~~n~l~~~ip~~  291 (313)
                      +++|+.|+|++|++. .+|..
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            356888888888888 66654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=89.98  E-value=0.095  Score=48.60  Aligned_cols=59  Identities=29%  Similarity=0.267  Sum_probs=32.4

Q ss_pred             CCCcCEEEccCCC-CCCCcchhhhhhccccccCccEEEccccc-cccc-----ccCCCCCCEEEccCCcc
Q 044980          222 LCKLTSIDFSSVK-LSQDISQVLDIFSAYGTYALVSLILSHCQ-ISAA-----LGKLSSLRNLDFSLNML  284 (313)
Q Consensus       222 ~~~L~~L~l~~n~-l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~-l~~~-----~~~~~~L~~L~l~~n~l  284 (313)
                      +.+|+.++++++. +++..-..+...    ++.|+.|.+.+|. +++.     ...++.|++|+++++..
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~----c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASR----CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhh----CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            3556666666665 443333333321    2267777766665 4544     44566677777776654

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=88.75  E-value=0.1  Score=26.33  Aligned_cols=16  Identities=25%  Similarity=0.331  Sum_probs=7.2

Q ss_pred             CCCCEEEcCCccCCCC
Q 044980          123 LLLEHIDLGQVHLGKA  138 (313)
Q Consensus       123 ~~L~~L~l~~n~l~~~  138 (313)
                      ++|++|++++|.+++.
T Consensus         2 ~~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    2 PNLETLDLSNNQITDE   17 (24)
T ss_dssp             TT-SEEE-TSSBEHHH
T ss_pred             CCCCEEEccCCcCCHH
Confidence            3455555555555443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.58  E-value=0.033  Score=45.80  Aligned_cols=84  Identities=23%  Similarity=0.224  Sum_probs=62.0

Q ss_pred             cccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc---ccCCCCCCEEEccCCccccccCccccCC
Q 044980          219 FIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA---LGKLSSLRNLDFSLNMLNGSIPLSLGQI  295 (313)
Q Consensus       219 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~~~L~~L~l~~n~l~~~ip~~l~~l  295 (313)
                      +......+.||++.|.+.. ....+..+.     .+..|+++.|++.-.   ++....++.+++..|.++ ..|-++...
T Consensus        38 i~~~kr~tvld~~s~r~vn-~~~n~s~~t-----~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~  110 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVN-LGKNFSILT-----RLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKE  110 (326)
T ss_pred             hhccceeeeehhhhhHHHh-hccchHHHH-----HHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh-hCCcccccc
Confidence            4445677888888887653 234455566     788888888875433   666667788888888888 788888899


Q ss_pred             CCCCEeeCCCCcCc
Q 044980          296 SHLEYLDLSNNKFV  309 (313)
Q Consensus       296 ~~L~~L~l~~n~l~  309 (313)
                      +++++++.-+|.++
T Consensus       111 ~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  111 PHPKKNEQKKTEFF  124 (326)
T ss_pred             CCcchhhhccCcch
Confidence            99999888888764

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=85.66  E-value=6.3  Score=36.19  Aligned_cols=107  Identities=18%  Similarity=0.044  Sum_probs=52.0

Q ss_pred             CCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhc---cCCCCCEEEcCCccCCCCCchhhhhcCc-
Q 044980           73 GYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLS---SLLLLEHIDLGQVHLGKASDCWIYSLRH-  148 (313)
Q Consensus        73 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~---~l~~L~~L~l~~n~l~~~~~~~~~~l~~-  148 (313)
                      +.+++++++.|.+...+|..+..=.  --++++.|..  ..+.+..+.   .=..+.+++++.|.....+|.....+.. 
T Consensus       165 pr~r~~dls~npi~dkvpihl~~p~--~pl~lr~c~l--sskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~  240 (553)
T KOG4242|consen  165 PRARQHDLSPNPIGDKVPIHLPQPG--NPLSLRVCEL--SSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGT  240 (553)
T ss_pred             chhhhhccCCCcccccCCccccCCC--Cccchhhhhh--hhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhh
Confidence            4456666666666655554432200  0144444443  222221111   1135778888888887777664433322 


Q ss_pred             --cCeeeccCcccCc---CCCCCCCCCCCCCEEEccCCCC
Q 044980          149 --LFFIVLSYNQFQG---KIPSTLGNLTSLKQIDLSHNQF  183 (313)
Q Consensus       149 --L~~L~L~~n~~~~---~~~~~~~~l~~L~~L~l~~n~l  183 (313)
                        +++++.+...+.-   .-+-..+.-++++..+++.|..
T Consensus       241 ~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~  280 (553)
T KOG4242|consen  241 LVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT  280 (553)
T ss_pred             hhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence              6666666655431   1112223334566666665544

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=81.55  E-value=1  Score=23.26  Aligned_cols=18  Identities=44%  Similarity=0.608  Sum_probs=13.6

Q ss_pred             CCCCEEEccCCccccccCc
Q 044980          272 SSLRNLDFSLNMLNGSIPL  290 (313)
Q Consensus       272 ~~L~~L~l~~n~l~~~ip~  290 (313)
                      ++|+.|++++|+++ .+|+
T Consensus         2 ~~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             cccceeecCCCccc-cCcc
Confidence            46788888888887 6665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	313
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-07
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-07
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		6e-06

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 85/188 (45%), Gaps = 28/188 (14%)
Query: 146 LRHLFFIVLSYNQFQGKIPSTLGNLT-SLKQIDLSHNQFNFTSP---------------- 188
           +R L  + LS+N+F G++P +L NL+ SL  +DLS N  NF+ P                
Sbjct: 339 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN--NFSGPILPNLCQNPKNTLQEL 396
Query: 189 -----GWLSKLNELSSFLLNLVSCMVRFHQL---IPTSFIRLCKLTSIDFSSVKLSQDIS 240
                G+  K+    S    LVS  + F+ L   IP+S   L KL  +      L  +I 
Sbjct: 397 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 456
Query: 241 QVLDIFSAYGTYALVSLILSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEY 300
           Q L       T  L    L+  +I + L   ++L  +  S N L G IP  +G++ +L  
Sbjct: 457 QELMYVKTLETLILDFNDLTG-EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 515
Query: 301 LDLSNNKF 308
           L LSNN F
Sbjct: 516 LKLSNNSF 523

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 85/188 (45%), Gaps = 28/188 (14%)
Query: 146 LRHLFFIVLSYNQFQGKIPSTLGNLT-SLKQIDLSHNQFNFTSP---------------- 188
           +R L  + LS+N+F G++P +L NL+ SL  +DLS N  NF+ P                
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN--NFSGPILPNLCQNPKNTLQEL 399
Query: 189 -----GWLSKLNELSSFLLNLVSCMVRFHQL---IPTSFIRLCKLTSIDFSSVKLSQDIS 240
                G+  K+    S    LVS  + F+ L   IP+S   L KL  +      L  +I 
Sbjct: 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459
Query: 241 QVLDIFSAYGTYALVSLILSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEY 300
           Q L       T  L    L+  +I + L   ++L  +  S N L G IP  +G++ +L  
Sbjct: 460 QELMYVKTLETLILDFNDLTG-EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518
Query: 301 LDLSNNKF 308
           L LSNN F
Sbjct: 519 LKLSNNSF 526

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 123/326 (37%), Gaps = 81/326 (24%)
Query: 16  CKESERGALLKLKRNLKDLSNCLASWNIGDGDCCK--WVGNFC---------NNLTGHIL 64
           C   ++ ALL++K++L +    L+SW +   DCC   W+G  C         NNL   + 
Sbjct: 3   CNPQDKQALLQIKKDLGN-PTTLSSW-LPTTDCCNRTWLGVLCDTDTQTYRVNNL--DLS 58
Query: 65  ELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDXXXXXXXXXX 124
            LNL  P+                   +  +L+NL YL+  +I                 
Sbjct: 59  GLNLPKPYP------------------IPSSLANLPYLNFLYIG---------------- 84
Query: 125 XEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFN 184
                 G  +L       I  L  L ++ +++    G IP  L  + +L  +D S+N  +
Sbjct: 85  ------GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138
Query: 185 FTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKL-TSIDFSSVKLSQDISQVL 243
            T P  +S L  L     +      R    IP S+    KL TS+  S  +L+  I    
Sbjct: 139 GTLPPSISSLPNLVGITFD----GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194
Query: 244 -----------------DIFSAYGTYALVSLI-LSHCQISAALGKLS---SLRNLDFSLN 282
                            D    +G+      I L+   ++  LGK+    +L  LD   N
Sbjct: 195 ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN 254
Query: 283 MLNGSIPLSLGQISHLEYLDLSNNKF 308
            + G++P  L Q+  L  L++S N  
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNL 280

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	313
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-38
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-37
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  138 bits (349), Expect = 1e-38
 Identities = 63/308 (20%), Positives = 122/308 (39%), Gaps = 45/308 (14%)

Query: 16  CKESERGALLKLKRNLKDLSNCLASWNIGDGDCC--KWVGNFCNNLT--GHILELNLE-- 69
           C   ++ ALL++K++L + +  L+SW     DCC   W+G  C+  T    +  L+L   
Sbjct: 3   CNPQDKQALLQIKKDLGNPTT-LSSWL-PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60

Query: 70  NPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-----WLSSLLL 124
           N         +            + NL  L +L +        +++L       ++ L  
Sbjct: 61  NLPKPYPIPSS------------LANLPYLNFLYIG------GINNLVGPIPPAIAKLTQ 102

Query: 125 LEHIDLGQVHL-GKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQF 183
           L ++ +   ++ G   D ++  ++ L  +  SYN   G +P ++ +L +L  I    N+ 
Sbjct: 103 LHYLYITHTNVSGAIPD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 184 NFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVL 243
           +   P      ++L + +  +     R    IP +      L  +D S   L  D S + 
Sbjct: 162 SGAIPDSYGSFSKLFTSM-TISRN--RLTGKIPPT-FANLNLAFVDLSRNMLEGDASVLF 217

Query: 244 DIFSAYGTYALVSLILSHCQISAA---LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEY 300
                        + L+   ++     +G   +L  LD   N + G++P  L Q+  L  
Sbjct: 218 GSDKN-----TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272

Query: 301 LDLSNNKF 308
           L++S N  
Sbjct: 273 LNVSFNNL 280

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  139 bits (352), Expect = 5e-37
 Identities = 61/298 (20%), Positives = 108/298 (36%), Gaps = 50/298 (16%)

Query: 15  GCKESERGALLKLKRNLKDLSNCLASWNIGDGDCCKWVGNFCNNLTGHILELNLENPFGY 74
                E   L+  K  L D  N L  W+  + + C + G  C +    +  ++L +    
Sbjct: 8   QSLYREIHQLISFKDVLPD-KNLLPDWS-SNKNPCTFDGVTCRD--DKVTSIDLSSKPLN 63

Query: 75  LKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVH 134
           + +S              + +L+ L+ L LS  +  ++  S+S       L  +DL +  
Sbjct: 64  VGFSAVSSS---------LLSLTGLESLFLS--NSHIN-GSVSGFKCSASLTSLDLSRNS 111

Query: 135 LGKA--SDCWIYSLRHLFFIVLSYNQFQGKIP-STLGNLTSLKQIDLSHNQFNFTSPGWL 191
           L     +   + S   L F+ +S N        S    L SL+ +DLS N  +  +    
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171

Query: 192 SKLNELSSF-LLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYG 250
              +       L +     +    +  S  R   L  +D SS   S  I           
Sbjct: 172 VLSDGCGELKHLAISGN--KISGDVDVS--RCVNLEFLDVSSNNFSTGIP---------- 217

Query: 251 TYALVSLILSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
                            LG  S+L++LD S N L+G    ++   + L+ L++S+N+F
Sbjct: 218 ----------------FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  116 bits (292), Expect = 4e-29
 Identities = 60/241 (24%), Positives = 93/241 (38%), Gaps = 35/241 (14%)

Query: 93  VGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASD---CWIYSLRHL 149
           +  +  L+ L L      L  +  S LS+   L  I L    L   +     WI  L +L
Sbjct: 462 LMYVKTLETLILD--FNDLTGEIPSGLSNCTNLNWISLSNNRL---TGEIPKWIGRLENL 516

Query: 150 FFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKL--------------- 194
             + LS N F G IP+ LG+  SL  +DL+ N FN T P  + K                
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 576

Query: 195 ---NELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGT 251
              N+      +    ++ F  +      RL      + +S       S   D   +   
Sbjct: 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS--- 633

Query: 252 YALVSLILSH----CQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNK 307
             ++ L +S+      I   +G +  L  L+   N ++GSIP  +G +  L  LDLS+NK
Sbjct: 634 --MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691

Query: 308 F 308
            
Sbjct: 692 L 692

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  114 bits (288), Expect = 1e-28
 Identities = 60/225 (26%), Positives = 87/225 (38%), Gaps = 24/225 (10%)

Query: 94  GNLSNLQYLDLSWIDCRLHVD-SLSWLSSLLLLEHIDLGQVHL-GKASDCWIYSLRHLFF 151
              + L+ L++S    +         L SL   +++ L +    G+  D    +   L  
Sbjct: 244 STCTELKLLNIS--SNQFVGPIPPLPLKSL---QYLSLAENKFTGEIPDFLSGACDTLTG 298

Query: 152 IVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFN-FTSPGWLSKLNELSSFLL--NLVSCM 208
           + LS N F G +P   G+ + L+ + LS N F+       L K+  L    L  N     
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN----- 353

Query: 209 VRFHQLIPTSFIRLC-KLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQ---- 263
             F   +P S   L   L ++D SS   S  I   L          L  L L +      
Sbjct: 354 -EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN---TLQELYLQNNGFTGK 409

Query: 264 ISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
           I   L   S L +L  S N L+G+IP SLG +S L  L L  N  
Sbjct: 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  106 bits (266), Expect = 1e-25
 Identities = 64/217 (29%), Positives = 91/217 (41%), Gaps = 31/217 (14%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHL-GKASDCWIYSLRHLFFI 152
           G    L  LDLS      +     +  S  LLE + L   +  G+     +  +R L  +
Sbjct: 291 GACDTLTGLDLS--GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348

Query: 153 VLSYNQFQGKIPSTLGNLT-SLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRF 211
            LS+N+F G++P +L NL+ SL  +DLS N F+      L +  + +   L L +    F
Sbjct: 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN--GF 406

Query: 212 HQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKL 271
              IP +     +L S+  S   LS             GT            I ++LG L
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLS-------------GT------------IPSSLGSL 441

Query: 272 SSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
           S LR+L   LNML G IP  L  +  LE L L  N  
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  102 bits (257), Expect = 2e-24
 Identities = 54/218 (24%), Positives = 81/218 (37%), Gaps = 34/218 (15%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLL-LEHIDLGQVHLGKA--SDCWIYSLRHLF 150
             +  L+ LDLS        +    L++L   L  +DL   +       +        L 
Sbjct: 340 LKMRGLKVLDLS--FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397

Query: 151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVR 210
            + L  N F GKIP TL N + L  + LS N  + T P  L  L++L    L L      
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR--DLKLWLN--M 453

Query: 211 FHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGK 270
               IP   + +  L ++      L+             G             I + L  
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLT-------------GE------------IPSGLSN 488

Query: 271 LSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
            ++L  +  S N L G IP  +G++ +L  L LSNN F
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 97.7 bits (244), Expect = 8e-23
 Identities = 45/221 (20%), Positives = 78/221 (35%), Gaps = 46/221 (20%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHL-GKASDCWIYSLRHLFFI 152
                L++L +S    ++    +  +S  + LE +D+   +        ++     L  +
Sbjct: 175 DGCGELKHLAISG--NKIS-GDVD-VSRCVNLEFLDVSSNNFSTGIP--FLGDCSALQHL 228

Query: 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFH 212
            +S N+  G     +   T LK +++S NQF                             
Sbjct: 229 DISGNKLSGDFSRAISTCTELKLLNISSNQFVGP-------------------------- 262

Query: 213 QLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS----AAL 268
             IP     L  L  +  +  K + +I   L          L  L LS            
Sbjct: 263 --IPPL--PLKSLQYLSLAENKFTGEIPDFLSGACD----TLTGLDLSGNHFYGAVPPFF 314

Query: 269 GKLSSLRNLDFSLNMLNGSIPL-SLGQISHLEYLDLSNNKF 308
           G  S L +L  S N  +G +P+ +L ++  L+ LDLS N+F
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 94.6 bits (236), Expect = 1e-21
 Identities = 54/243 (22%), Positives = 87/243 (35%), Gaps = 41/243 (16%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSL-SWLSSLLLLEHIDLGQVHL-GKASDCWIYSLRHLFF 151
            N +NL ++ LS  + RL    +  W+  L  L  + L      G      +   R L +
Sbjct: 487 SNCTNLNWISLS--NNRLT-GEIPKWIGRLENLAILKLSNNSFSGNIPA-ELGDCRSLIW 542

Query: 152 IVLSYNQFQGKIPSTL--------------------GNLTSLKQIDLSHNQFNFTS--PG 189
           + L+ N F G IP+ +                     N    K+   + N   F      
Sbjct: 543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602

Query: 190 WLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAY 249
            L++L+  +   +        +      +F     +  +D S   LS  I + +      
Sbjct: 603 QLNRLSTRNPCNIT----SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY- 657

Query: 250 GTYALVSLILSH----CQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSN 305
               L  L L H      I   +G L  L  LD S N L+G IP ++  ++ L  +DLSN
Sbjct: 658 ----LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713

Query: 306 NKF 308
           N  
Sbjct: 714 NNL 716

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 94.2 bits (235), Expect = 1e-21
 Identities = 54/219 (24%), Positives = 79/219 (36%), Gaps = 35/219 (15%)

Query: 94  GNLSNLQYLDLSWIDCRLH-VDSLSWLSSLLLLEHIDLGQVHL-GKASDCWIYSLRHLFF 151
           G+ S L+ L LS           +  L  +  L+ +DL      G+  +        L  
Sbjct: 315 GSCSLLESLALS--SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372

Query: 152 IVLSYNQFQGKIPSTLGN--LTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMV 209
           + LS N F G I   L      +L+++ L +N F    P  LS  +EL S  L+L     
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS--LHLSFNY- 429

Query: 210 RFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALG 269
                IP+S   L KL  +      L              G             I   L 
Sbjct: 430 -LSGTIPSSLGSLSKLRDLKLWLNMLE-------------GE------------IPQELM 463

Query: 270 KLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
            + +L  L    N L G IP  L   ++L ++ LSNN+ 
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 72.2 bits (178), Expect = 3e-14
 Identities = 46/252 (18%), Positives = 74/252 (29%), Gaps = 62/252 (24%)

Query: 57  NNLTGHILELNLENPFGYLKYS-DAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDS 115
           N   G I       P    K S     +    +  + + N    +    +          
Sbjct: 548 NLFNGTI-------PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600

Query: 116 LSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQ 175
              L+ L      ++     G  +     +   + F+ +SYN   G IP  +G++  L  
Sbjct: 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI 660

Query: 176 IDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKL 235
           ++L HN  + +                            IP     L  L  +D SS KL
Sbjct: 661 LNLGHNDISGS----------------------------IPDEVGDLRGLNILDLSSNKL 692

Query: 236 SQDISQVLDIFSAYGTYALVSLILSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQI 295
                                      +I  A+  L+ L  +D S N L+G IP  +GQ 
Sbjct: 693 D-------------------------GRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQF 726

Query: 296 SHLEYLDLSNNK 307
                    NN 
Sbjct: 727 ETFPPAKFLNNP 738

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.7 bits (104), Expect = 6e-05
 Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 62/133 (46%)

Query: 56  CNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDS 115
            N L+G+I +                           +G++  L  L+L         + 
Sbjct: 641 YNMLSGYIPK--------------------------EIGSMPYLFILNLGH-------ND 667

Query: 116 LS-----WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNL 170
           +S      +  L  L  +D                        LS N+  G+IP  +  L
Sbjct: 668 ISGSIPDEVGDLRGLNILD------------------------LSSNKLDGRIPQAMSAL 703

Query: 171 TSLKQIDLSHNQF 183
           T L +IDLS+N  
Sbjct: 704 TMLTEIDLSNNNL 716

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  106 bits (267), Expect = 8e-26
 Identities = 48/223 (21%), Positives = 84/223 (37%), Gaps = 12/223 (5%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIV 153
             L  L+ L+L      L   S    +    L  + L    + K  +      ++L  + 
Sbjct: 70  QKLPMLKVLNLQ--HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127

Query: 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQ 213
           LS+N        T   L +L+++ LS+N+        L      S   L L S   +  +
Sbjct: 128 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN--QIKE 185

Query: 214 LIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA------A 267
             P  F  + +L  +  ++V+L   +++   +       ++ +L LS+ Q+S        
Sbjct: 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTE--KLCLELANTSIRNLSLSNSQLSTTSNTTFL 243

Query: 268 LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
             K ++L  LD S N LN     S   +  LEY  L  N    
Sbjct: 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 97.4 bits (243), Expect = 1e-22
 Identities = 42/222 (18%), Positives = 76/222 (34%), Gaps = 16/222 (7%)

Query: 96  LSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLS 155
            +N+  L+L+    +L     +  +    L  +D+G   + K        L  L  + L 
Sbjct: 24  PTNITVLNLT--HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81

Query: 156 YNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLI 215
           +N+       T    T+L ++ L  N           K   L +  L+L           
Sbjct: 82  HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT--LDLSHN--GLSSTK 137

Query: 216 PTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS----AALGKL 271
             + ++L  L  +  S+ K+    S   +    +   +L  L LS  QI          +
Sbjct: 138 LGTQVQLENLQELLLSNNKIQALKS---EELDIFANSSLKKLELSSNQIKEFSPGCFHAI 194

Query: 272 SSLRNLDFSLNMLNGSIPLSLG---QISHLEYLDLSNNKFVT 310
             L  L  +   L  S+   L      + +  L LSN++  T
Sbjct: 195 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 96.6 bits (241), Expect = 2e-22
 Identities = 45/234 (19%), Positives = 85/234 (36%), Gaps = 25/234 (10%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQ---------VHLGKASDCWIY 144
             L  L+Y  L      +       L  L  + +++L +           L K  D    
Sbjct: 269 AWLPQLEYFFLE--YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326

Query: 145 SLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFL--L 202
            L+ L  + +  N   G   +    L +LK + LS++  +  +    + ++   S L  L
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386

Query: 203 NLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHC 262
           NL     +  ++   +F  L  L  +D    ++ Q+++     +   G   +  + LS+ 
Sbjct: 387 NLTKN--KISKIESDAFSWLGHLEVLDLGLNEIGQELTG--QEWR--GLENIFEIYLSYN 440

Query: 263 QIS----AALGKLSSLRNLDFSLNMLNG--SIPLSLGQISHLEYLDLSNNKFVT 310
           +       +   + SL+ L      L    S P     + +L  LDLSNN    
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 96.2 bits (240), Expect = 3e-22
 Identities = 49/226 (21%), Positives = 80/226 (35%), Gaps = 16/226 (7%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKA-SDCWIYSLRHLFFIV 153
             S L  L+L+    ++        S L  LE +DLG   +G+  +      L ++F I 
Sbjct: 379 AHSPLHILNLT--KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY 436

Query: 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNF--TSPGWLSKLNELSSFLLNLVSCMVRF 211
           LSYN++     ++   + SL+++ L         +SP     L  L+   L+L +     
Sbjct: 437 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI--LDLSNN--NI 492

Query: 212 HQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAY---GTYALVSLILSHCQISA-- 266
             +       L KL  +D     L++           Y   G   L  L L         
Sbjct: 493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 552

Query: 267 --ALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
                 L  L+ +D  LN LN            L+ L+L  N   +
Sbjct: 553 VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 94.7 bits (236), Expect = 8e-22
 Identities = 42/253 (16%), Positives = 77/253 (30%), Gaps = 40/253 (15%)

Query: 94  GNLSNLQYLDLSWIDCRLH---VDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLR--H 148
             +  L  L L+  + +L     + L    +   + ++ L    L   S+     L+  +
Sbjct: 192 HAIGRLFGLFLN--NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 249

Query: 149 LFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSF-----LLN 203
           L  + LSYN        +   L  L+   L +N         L  L  +           
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309

Query: 204 LVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVL-------------------- 243
               +    ++   SF  L  L  ++     +    S +                     
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369

Query: 244 ---DIFSAYGTYALVSLILSHCQISA----ALGKLSSLRNLDFSLNMLNGSIPLS-LGQI 295
              + F +     L  L L+  +IS     A   L  L  LD  LN +   +       +
Sbjct: 370 LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL 429

Query: 296 SHLEYLDLSNNKF 308
            ++  + LS NK+
Sbjct: 430 ENIFEIYLSYNKY 442

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 93.9 bits (234), Expect = 1e-21
 Identities = 40/227 (17%), Positives = 73/227 (32%), Gaps = 19/227 (8%)

Query: 94  GNLSNLQYLDLSWIDCRLHVD-SLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152
             L +L+ LDL      +  + +      L  +  I L      + +      +  L  +
Sbjct: 402 SWLGHLEVLDLG--LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459

Query: 153 VLSYNQFQG--KIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLL---NLVSC 207
           +L     +     PS    L +L  +DLS+N     +   L  L +L    L   NL   
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519

Query: 208 -MVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS- 265
                          L  L  ++  S    +   +V         + L  + L    ++ 
Sbjct: 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK-----DLFELKIIDLGLNNLNT 574

Query: 266 ---AALGKLSSLRNLDFSLNMLNGSIPLSLGQI-SHLEYLDLSNNKF 308
              +      SL++L+   N++        G    +L  LD+  N F
Sbjct: 575 LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 37/160 (23%), Positives = 51/160 (31%), Gaps = 15/160 (9%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHL--------GKASDCWIYS 145
             L NL  LDLS  +  +   +   L  L  LE +DL   +L              ++  
Sbjct: 477 QPLRNLTILDLS--NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG 534

Query: 146 LRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLV 205
           L HL  + L  N F         +L  LK IDL  N  N       +    L S  LNL 
Sbjct: 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS--LNLQ 592

Query: 206 SCMVRFHQLIPTSFIRLCK-LTSIDFSSVKLSQDISQVLD 244
                   +    F    + LT +D            +  
Sbjct: 593 KN--LITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAW 630

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.6 bits (150), Expect = 9e-11
 Identities = 29/142 (20%), Positives = 50/142 (35%), Gaps = 16/142 (11%)

Query: 171 TSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDF 230
            S +  D SH +         + +       LNL     +  +L   +F R  +LTS+D 
Sbjct: 4   VSHEVADCSHLKLTQVPDDLPTNITV-----LNLTHN--QLRRLPAANFTRYSQLTSLDV 56

Query: 231 SSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS----AALGKLSSLRNLDFSLNMLNG 286
               +S+   ++           L  L L H ++S          ++L  L    N +  
Sbjct: 57  GFNTISKLEPELCQ-----KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK 111

Query: 287 SIPLSLGQISHLEYLDLSNNKF 308
                  +  +L  LDLS+N  
Sbjct: 112 IKNNPFVKQKNLITLDLSHNGL 133

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 99.3 bits (248), Expect = 2e-23
 Identities = 47/237 (19%), Positives = 81/237 (34%), Gaps = 26/237 (10%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCW-IYSLRHLFFI 152
           G+   L  L+L+    ++     ++      +E++      L    + +   S+  +  I
Sbjct: 350 GSEIKLASLNLA--YNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAI 407

Query: 153 VLSYNQFQG-------KIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLL--- 202
             SYN+           +  T     ++  I+LS+NQ +       S  + LSS  L   
Sbjct: 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467

Query: 203 NLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHC 262
            L        +    +F     LTSID    KL++    + D F A     LV + LS+ 
Sbjct: 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK----LSDDFRATTLPYLVGIDLSYN 523

Query: 263 QIS---AALGKLSSLR------NLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
             S         S+L+        D   N      P  +     L  L + +N    
Sbjct: 524 SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK 580

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 85.9 bits (213), Expect = 8e-19
 Identities = 37/227 (16%), Positives = 77/227 (33%), Gaps = 25/227 (11%)

Query: 93  VGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152
           V  L+ L+   +               +     E+ +       K  D    +L+ L  +
Sbjct: 202 VMRLTKLRQFYMGNS-------PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV 254

Query: 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSF--LLNLVSCMVR 210
            +       K+P+ L  L  ++ I+++ N+   +          L+       +    + 
Sbjct: 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGI-SGEQLKDDWQALADAPVGEKIQIIYIG 313

Query: 211 FHQL----IPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS- 265
           ++ L    + TS  ++ KL  ++    +L   +              L SL L++ QI+ 
Sbjct: 314 YNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIK------LASLNLAYNQITE 367

Query: 266 ---AALGKLSSLRNLDFSLNMLNG-SIPLSLGQISHLEYLDLSNNKF 308
                 G    + NL F+ N L           +S +  +D S N+ 
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEI 414

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 79.7 bits (197), Expect = 9e-17
 Identities = 25/222 (11%), Positives = 59/222 (26%), Gaps = 39/222 (17%)

Query: 93  VGNLSNLQYLDLS--WIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWI--YSLRH 148
           +G L+ L+ L L          +     +S+ +  E     ++H  K    +        
Sbjct: 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160

Query: 149 LFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCM 208
           L    ++ +  Q  I  +        QI    N   F                       
Sbjct: 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF----------------------- 197

Query: 209 VRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAAL 268
                 +  + +RL KL      +     +                      +       
Sbjct: 198 ------VSKAVMRLTKLRQFYMGNSPFVAENICEA------WENENSEYAQQYKTEDLKW 245

Query: 269 GKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
             L  L +++         +P  L  +  ++ ++++ N+ ++
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.9 bits (182), Expect = 7e-15
 Identities = 27/189 (14%), Positives = 55/189 (29%), Gaps = 25/189 (13%)

Query: 145 SLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNL 204
           S   +  + L      G++P  +G LT L+ + L  +         L     +S+  ++ 
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSH--GEKVNERLFGPKGISA-NMSD 135

Query: 205 VSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQI 264
                       T      +    D     ++ D  Q     S+  T     +      I
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 265 S---AALGKLSSLRNLDFSLNMLNG-------------------SIPLSLGQISHLEYLD 302
           +    A+ +L+ LR      +                       +  L    +  L  ++
Sbjct: 196 TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255

Query: 303 LSNNKFVTK 311
           + N   +TK
Sbjct: 256 VYNCPNLTK 264

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 33/225 (14%), Positives = 62/225 (27%), Gaps = 41/225 (18%)

Query: 93  VGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQ-------VHLGKASDCWIYS 145
                N+  ++LS  + ++        S+   L  I+L          +  K  +    +
Sbjct: 429 PFKGINVSSINLS--NNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486

Query: 146 LRHLFFIVLSYNQFQGKIPS-TLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLL-- 202
              L  I L +N+            L  L  IDLS+N F+   P      + L  F +  
Sbjct: 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFS-KFPTQPLNSSTLKGFGIRN 545

Query: 203 NLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHC 262
              +   R  +  P        LT +   S  + +                         
Sbjct: 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK------------------------- 580

Query: 263 QISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNK 307
            ++  +    ++  LD   N         +          L  +K
Sbjct: 581 -VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 94.3 bits (235), Expect = 9e-22
 Identities = 44/227 (19%), Positives = 91/227 (40%), Gaps = 17/227 (7%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIV 153
            +LS+L  L L+     +   +L   S L  L+ +   + +L    +  I  L+ L  + 
Sbjct: 73  QSLSHLSTLILT--GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 154 LSYNQFQG-KIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFH 212
           +++N  Q  K+P    NLT+L+ +DLS N+        L  L+++    L+L   +   +
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 213 QLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQ--------I 264
            + P +F +  +L  +   +   S ++ +            +  L+L   +         
Sbjct: 191 FIQPGAF-KEIRLHKLTLRNNFDSLNVMK--TCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 265 SAALGKLSSLRNLDFSLNMLNGS---IPLSLGQISHLEYLDLSNNKF 308
            +AL  L +L   +F L  L+     I      ++++    L +   
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 93.2 bits (232), Expect = 3e-21
 Identities = 51/221 (23%), Positives = 84/221 (38%), Gaps = 15/221 (6%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIV 153
            +L +L++LDLS                   L+++DL    +          L  L  + 
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD 402

Query: 154 LSYNQFQGKIP-STLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFH 212
             ++  +     S   +L +L  +D+SH        G  + L+ L    L +     +  
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV--LKMAGNSFQ-E 459

Query: 213 QLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS----AAL 268
             +P  F  L  LT +D S  +L Q      +  S+     L  L +SH           
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS-----LQVLNMSHNNFFSLDTFPY 514

Query: 269 GKLSSLRNLDFSLNMLNGSIPLSLGQI-SHLEYLDLSNNKF 308
             L+SL+ LD+SLN +  S    L    S L +L+L+ N F
Sbjct: 515 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 86.6 bits (215), Expect = 4e-19
 Identities = 47/222 (21%), Positives = 84/222 (37%), Gaps = 25/222 (11%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIV 153
             L+N+    L      + ++ +   S     +H++L     G+     + SL+ L    
Sbjct: 279 NCLTNVSSFSLV----SVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL---- 330

Query: 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTS--PGWLSKLNELSSFLLNLVSCMVRF 211
            ++   +G    +  +L SL+ +DLS N  +F             L    L+L    V  
Sbjct: 331 -TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY--LDLSFNGV-- 385

Query: 212 HQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS----AA 267
              + ++F+ L +L  +DF    L Q       +F       L+ L +SH          
Sbjct: 386 -ITMSSNFLGLEQLEHLDFQHSNLKQMSEF--SVFL--SLRNLIYLDISHTHTRVAFNGI 440

Query: 268 LGKLSSLRNLDFSLNMLNGSI-PLSLGQISHLEYLDLSNNKF 308
              LSSL  L  + N    +  P    ++ +L +LDLS  + 
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 84.3 bits (209), Expect = 3e-18
 Identities = 45/216 (20%), Positives = 78/216 (36%), Gaps = 10/216 (4%)

Query: 97  SNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSY 156
            + + LDLS+    L         S   L+ +DL +  +    D    SL HL  ++L+ 
Sbjct: 28  FSTKNLDLSF--NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 157 NQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIP 216
           N  Q         L+SL+++              +  L  L    LN+   +++    +P
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE--LNVAHNLIQ-SFKLP 142

Query: 217 TSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS---AALGKLSS 273
             F  L  L  +D SS K+       L +         +SL LS   ++       K   
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-QMPLLNLSLDLSLNPMNFIQPGAFKEIR 201

Query: 274 LRNLDFSLNMLNGSIP-LSLGQISHLEYLDLSNNKF 308
           L  L    N  + ++    +  ++ LE   L   +F
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 80.8 bits (200), Expect = 4e-17
 Identities = 43/228 (18%), Positives = 72/228 (31%), Gaps = 25/228 (10%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIV 153
            +   LQ LDLS   C +         SL  L  + L    +   +      L  L  +V
Sbjct: 49  FSFPELQVLDLSR--CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106

Query: 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFN-FTSPGWLSKLNELSSFLLNLVSCMVRFH 212
                        +G+L +LK+++++HN    F  P + S L  L    L+L S   +  
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH--LDLSSN--KIQ 162

Query: 213 QLIPTSFIRLCKLT----SIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS--- 265
            +  T    L ++     S+D S   ++                 L  L L +   S   
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR------LHKLTLRNNFDSLNV 216

Query: 266 --AALGKLSSLRNLDFSLNMLNGSIPL---SLGQISHLEYLDLSNNKF 308
               +  L+ L      L        L       +  L  L +   + 
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 38/224 (16%), Positives = 72/224 (32%), Gaps = 15/224 (6%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSL-SWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHL--- 149
           G+L  L+ L+++     +    L  + S+L  LEH+DL    +       +  L  +   
Sbjct: 121 GHLKTLKELNVA--HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 150 -FFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFT-SPGWLSKLNELSSFLL--NLV 205
              + LS N      P     +  L ++ L +N  +       +  L  L    L     
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

Query: 206 SCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS 265
                  +   ++   LC LT  +F    L   +  ++D+F+      + S  L    I 
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN--CLTNVSSFSLVSVTIE 295

Query: 266 --AALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNK 307
                      ++L+           L L  +  L +       
Sbjct: 296 RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN 339

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 70.8 bits (174), Expect = 8e-14
 Identities = 37/213 (17%), Positives = 68/213 (31%), Gaps = 32/213 (15%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHL-GKASDCWIYSLRHLFFI 152
            +L NL YLD+S       V      + L  LE + +                LR+L F+
Sbjct: 418 LSLRNLIYLDIS--HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475

Query: 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFH 212
            LS  Q +   P+   +L+SL+ +++SHN F          LN L    L+         
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV--LDYSLN--HIM 531

Query: 213 QLIPTSFIRLCK-LTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKL 271
                        L  ++ +    +                         C+  + L  +
Sbjct: 532 TSKKQELQHFPSSLAFLNLTQNDFACT-----------------------CEHQSFLQWI 568

Query: 272 SSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLS 304
              R L   +  +  + P     +  +  L+++
Sbjct: 569 KDQRQLLVEVERMECATPSDKQGMP-VLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 34/152 (22%), Positives = 61/152 (40%), Gaps = 16/152 (10%)

Query: 162 KIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIR 221
           KIP  L    S K +DLS N              EL    L+L  C      +   ++  
Sbjct: 21  KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQV--LDLSRC--EIQTIEDGAYQS 74

Query: 222 LCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS----AALGKLSSLRNL 277
           L  L+++  +   +              G  +L  L+     ++      +G L +L+ L
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFS-----GLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 278 DFSLNMLNG-SIPLSLGQISHLEYLDLSNNKF 308
           + + N++    +P     +++LE+LDLS+NK 
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 254 LVSLILSHCQIS----AALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFV 309
             +L LS   +      +      L+ LD S   +      +   +SHL  L L+ N   
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 310 T 310
           +
Sbjct: 90  S 90

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 92.0 bits (229), Expect = 6e-21
 Identities = 47/226 (20%), Positives = 77/226 (34%), Gaps = 19/226 (8%)

Query: 94  GNLSNLQYLDLSW--IDCRLHVDSLSWLSSL--LLLEHIDLGQVHLGKASDCWIYSLRHL 149
            N  +L +L +        L    L  L +L  L L H D+            +  L+ L
Sbjct: 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL 381

Query: 150 FFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQF-NFTSPGWLSKLNELSSFLLNLVSCM 208
               LSYN+              L+ +DL+  +     +      L+ L    LNL    
Sbjct: 382 N---LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV--LNLSHS- 435

Query: 209 VRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA-- 266
                     F  L  L  ++       +   Q  +         L  L+LS C +S+  
Sbjct: 436 -LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ--TLGRLEILVLSFCDLSSID 492

Query: 267 --ALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
             A   L  + ++D S N L  S   +L  +  + YL+L++N    
Sbjct: 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI 537

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 91.2 bits (227), Expect = 1e-20
 Identities = 33/221 (14%), Positives = 69/221 (31%), Gaps = 14/221 (6%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIV 153
            +   L  L L+     L   + + LS    L+H+   Q  +       +++ + L  + 
Sbjct: 78  QSQHRLDTLVLT--ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135

Query: 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQ 213
           L  N               LK +D  +N  ++ S   +S L + ++  LNL    +    
Sbjct: 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-- 193

Query: 214 LIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA------A 267
            I           S++F     +Q++  +          +L                   
Sbjct: 194 -IEPGAFDSAVFQSLNFGG---TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249

Query: 268 LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
                S+ +++   +        +    S L+ LDL+    
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 88.9 bits (221), Expect = 6e-20
 Identities = 50/260 (19%), Positives = 88/260 (33%), Gaps = 18/260 (6%)

Query: 57  NNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLS--NLQYLDLSWIDCRLHVD 114
                 I +    +    L     ED D    S  V   L   +++ ++L          
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ--KHYFFNI 269

Query: 115 SLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLK 174
           S +       L+ +DL   HL +     +  L  L  +VLS N+F+     +  N  SL 
Sbjct: 270 SSNTFHCFSGLQELDLTATHLSELPSG-LVGLSTLKKLVLSANKFENLCQISASNFPSLT 328

Query: 175 QIDLSHNQFNFT-SPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSV 233
            + +  N        G L  L  L    L+L    +            L  L S++ S  
Sbjct: 329 HLSIKGNTKRLELGTGCLENLENLRE--LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386

Query: 234 KLSQDISQVLDIFSAYGTYALVSLILSHCQIS-----AALGKLSSLRNLDFSLNMLNGSI 288
           +     ++            L  L L+  ++      +    L  L+ L+ S ++L+ S 
Sbjct: 387 EPLSLKTEAFKECPQ-----LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS 441

Query: 289 PLSLGQISHLEYLDLSNNKF 308
                 +  L++L+L  N F
Sbjct: 442 EQLFDGLPALQHLNLQGNHF 461

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 85.1 bits (211), Expect = 1e-18
 Identities = 47/226 (20%), Positives = 81/226 (35%), Gaps = 22/226 (9%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQ-VHLGKASDCWIYSLRHLFFI 152
             LS L+ L LS    +         S+   L H+ +       +     + +L +L  +
Sbjct: 298 VGLSTLKKLVLS--ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355

Query: 153 VLSYNQFQ--GKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVR 210
            LS++  +        L NL+ L+ ++LS+N+          +  +L    L+L     R
Sbjct: 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL--LDLAFT--R 411

Query: 211 FHQLIPTS-FIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS---- 265
                  S F  L  L  ++ S   L     Q+ D     G  AL  L L          
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD-----GLPALQHLNLQGNHFPKGNI 466

Query: 266 ---AALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
               +L  L  L  L  S   L+     +   +  + ++DLS+N+ 
Sbjct: 467 QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 85.1 bits (211), Expect = 1e-18
 Identities = 49/221 (22%), Positives = 83/221 (37%), Gaps = 14/221 (6%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIV 153
            NL NL+ LDLS  D          L +L  L+ ++L                  L  + 
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406

Query: 154 LSYNQFQGKIP-STLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCM-VRF 211
           L++ + + K   S   NL  LK ++LSH+  + +S      L  L    LNL      + 
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH--LNLQGNHFPKG 464

Query: 212 HQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA----A 267
           +     S   L +L  +  S   LS                 +  + LSH ++++    A
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT-----SLKMMNHVDLSHNRLTSSSIEA 519

Query: 268 LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
           L  L  +  L+ + N ++  +P  L  +S    ++L  N  
Sbjct: 520 LSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 80.4 bits (199), Expect = 5e-17
 Identities = 42/225 (18%), Positives = 69/225 (30%), Gaps = 17/225 (7%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIV 153
            N   L+ L L      +    L        L+ +D     +   S   + SL+    + 
Sbjct: 126 HNQKTLESLYLGS--NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183

Query: 154 L--SYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRF 211
           L  + N   G I     +    + ++    Q        L      S +L          
Sbjct: 184 LNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM--DD 240

Query: 212 HQLIPTSFIRLCK--LTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS---A 266
             + P  F  LC+  + SI+          S     FS      L  L L+   +S   +
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG-----LQELDLTATHLSELPS 295

Query: 267 ALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTK 311
            L  LS+L+ L  S N       +S      L +L +  N    +
Sbjct: 296 GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 43/224 (19%), Positives = 72/224 (32%), Gaps = 17/224 (7%)

Query: 93  VGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLR--HLF 150
             + +  Q L+       L +      S++  L       +     S      L    + 
Sbjct: 198 AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE 257

Query: 151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVR 210
            I L  + F     +T    + L+++DL+    +    G L  L+ L    L L +   +
Sbjct: 258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG-LVGLSTLKK--LVLSAN--K 312

Query: 211 FHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA---- 266
           F  L   S      LT +         ++              L  L LSH  I      
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLELG--TGCLE--NLENLRELDLSHDDIETSDCC 368

Query: 267 --ALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
              L  LS L++L+ S N        +  +   LE LDL+  + 
Sbjct: 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 78.1 bits (193), Expect = 3e-16
 Identities = 35/227 (15%), Positives = 66/227 (29%), Gaps = 22/227 (9%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIV 153
             L NL +LDL+   C+++        S   L+ + L    L   ++  +   + L  + 
Sbjct: 54  SRLINLTFLDLTR--CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111

Query: 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQ 213
                        L N  +L+ + L  N  +           +L    L+  +     H 
Sbjct: 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV--LDFQNN--AIHY 167

Query: 214 LIPTSFIRLCKLT--SIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA----- 266
           L       L + T  S++ +   ++       D           SL     Q        
Sbjct: 168 LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV------FQSLNFGGTQNLLVIFKG 221

Query: 267 -ALGKLSSLRNLDFSLNMLNGSIPLSLGQIS--HLEYLDLSNNKFVT 310
                + SL    F         P     +    +E ++L  + F  
Sbjct: 222 LKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 74.3 bits (183), Expect = 6e-15
 Identities = 37/218 (16%), Positives = 67/218 (30%), Gaps = 14/218 (6%)

Query: 96  LSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLS 155
            ++ + L+ S     L     +  S L+ L  +DL +  +    +    S   L  +VL+
Sbjct: 32  PNSTECLEFS--FNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89

Query: 156 YNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLI 215
            N       + L    +LK +       +      L     L S  L L S       + 
Sbjct: 90  ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES--LYLGSN--HISSIK 145

Query: 216 PTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA---ALGKLS 272
                   KL  +DF +  +        +  S+      +SL L+   I+         +
Sbjct: 146 LPKGFPTEKLKVLDFQNNAIHYLSK---EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA 202

Query: 273 SLRNLDFSLNMLNGSIPLSLG--QISHLEYLDLSNNKF 308
             ++L+F        I   L    I  L      +   
Sbjct: 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 41/227 (18%), Positives = 82/227 (36%), Gaps = 20/227 (8%)

Query: 94  GNLSNLQYLDLSWIDCRL-HVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152
            +L     L L+     +  ++  ++ S++    +    Q  L         +++ L+  
Sbjct: 174 SSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLG 233

Query: 153 VLSYNQFQGKIPSTLGNL--TSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVR 210
                  +   P+    L   S++ I+L  + F   S       + L    L+L +  + 
Sbjct: 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQE--LDLTATHLS 291

Query: 211 FHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQI-----S 265
               +P+  + L  L  +  S+ K                  +L  L +          +
Sbjct: 292 E---LPSGLVGLSTLKKLVLSANKFENLCQISAS-----NFPSLTHLSIKGNTKRLELGT 343

Query: 266 AALGKLSSLRNLDFSLNMLNGS--IPLSLGQISHLEYLDLSNNKFVT 310
             L  L +LR LD S + +  S    L L  +SHL+ L+LS N+ ++
Sbjct: 344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 35/146 (23%), Positives = 57/146 (39%), Gaps = 10/146 (6%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQ---VHLGKASDCWIYSLRHLF 150
            NL  L+ L+LS     L + S      L  L+H++L               + +L  L 
Sbjct: 422 QNLHLLKVLNLS--HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479

Query: 151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVR 210
            +VLS+            +L  +  +DLSHN+   +S   LS L  +    LNL S    
Sbjct: 480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY---LNLASN--H 534

Query: 211 FHQLIPTSFIRLCKLTSIDFSSVKLS 236
              ++P+    L +  +I+     L 
Sbjct: 535 ISIILPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 28/161 (17%), Positives = 51/161 (31%), Gaps = 40/161 (24%)

Query: 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQ 213
                   +IP TL    S + ++ S N                                
Sbjct: 19  CENLGLN-EIPGTL--PNSTECLEFSFNVLP----------------------------T 47

Query: 214 LIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS----AALG 269
           +  T+F RL  LT +D +  ++                + L +L+L+   +      AL 
Sbjct: 48  IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ-----SQHRLDTLVLTANPLIFMAETALS 102

Query: 270 KLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
              +L++L F    ++    + L     LE L L +N   +
Sbjct: 103 GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS 143

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 89.2 bits (221), Expect = 6e-20
 Identities = 37/228 (16%), Positives = 79/228 (34%), Gaps = 27/228 (11%)

Query: 93  VGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152
           +  L+ LQ +  +  +        ++ +  +  E  +       +  +    +L+ L  +
Sbjct: 444 IQRLTKLQIIYFA--NSPF-----TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496

Query: 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFN--FTSPGWLSKLNELSSFLLNLVSCMVR 210
            L       ++P  L +L  L+ ++++ N+           ++L +       +    + 
Sbjct: 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556

Query: 211 FHQL----IPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA 266
           ++ L       S  ++ KL  +D    K+       L+ F       L  L L + QI  
Sbjct: 557 YNNLEEFPASASLQKMVKLGLLDCVHNKVRH-----LEAFG--TNVKLTDLKLDYNQIEE 609

Query: 267 ----ALGKLSSLRNLDFSLNMLNGSIP--LSLGQISHLEYLDLSNNKF 308
                      +  L FS N L   IP   +   +  +  +D S NK 
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKI 656

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 88.4 bits (219), Expect = 1e-19
 Identities = 32/228 (14%), Positives = 78/228 (34%), Gaps = 20/228 (8%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIV 153
             +  L  LD      ++    L    + + L  + L    + +  + +      +  + 
Sbjct: 570 QKMVKLGLLDCV--HNKVR--HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLG 625

Query: 154 LSYNQFQGKIPST--LGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMV-- 209
            S+N+ +  IP+     ++  +  +D S+N+           +++     +N  +  +  
Sbjct: 626 FSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK--GINASTVTLSY 682

Query: 210 -RFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSA--YGTYALVSLILSHCQIS- 265
               +     F     +++I  S+  ++      L         TY L ++ L   +++ 
Sbjct: 683 NEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742

Query: 266 ----AALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFV 309
                    L  L N+D S N  + S P      S L+   + + +  
Sbjct: 743 LSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDA 789

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 88.0 bits (218), Expect = 2e-19
 Identities = 38/229 (16%), Positives = 74/229 (32%), Gaps = 42/229 (18%)

Query: 95  NLSNLQYLDLSWIDCRL-HVDSLSWLSSLLLLEHIDLGQVHLGK-----ASDCWIYSLRH 148
               ++ L  S    +L ++ ++    S+ ++  +D     +G      +     Y   +
Sbjct: 617 FTDQVEGLGFS--HNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674

Query: 149 LFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCM 208
              + LSYN+ Q          + +  I LS+N               ++S   N +   
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNL--------------MTSIPENSLK-- 718

Query: 209 VRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS--- 265
                    ++     LT+ID    KL    + + D F A     L ++ +S+   S   
Sbjct: 719 -----PKDGNYKNTYLLTTIDLRFNKL----TSLSDDFRATTLPYLSNMDVSYNCFSSFP 769

Query: 266 AALGKLSSLR------NLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
                 S L+        D   N +    P  +     L  L + +N  
Sbjct: 770 TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 79.9 bits (197), Expect = 8e-17
 Identities = 37/256 (14%), Positives = 78/256 (30%), Gaps = 45/256 (17%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGK-ASDCWIYSLRHLFFI 152
           G    L  L L     ++      + +    +E +      L    +     S+  +  +
Sbjct: 592 GTNVKLTDLKLD--YNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSV 649

Query: 153 VLSYNQFQGKIPSTLG-----NLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLL---NL 204
             SYN+   +  +           +   + LS+N+         +  + +S+ +L    +
Sbjct: 650 DFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709

Query: 205 VSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQI 264
            S      +    ++     LT+ID    KL+     + D F A     L ++ +S+   
Sbjct: 710 TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS----LSDDFRATTLPYLSNMDVSYNCF 765

Query: 265 S---AALGKLSSLR------NLDFSLNMLNGSIPLSLGQISHLEYL-------------- 301
           S         S L+        D   N +    P  +     L  L              
Sbjct: 766 SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL 825

Query: 302 -------DLSNNKFVT 310
                  D+++N  ++
Sbjct: 826 TPQLYILDIADNPNIS 841

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 76.8 bits (189), Expect = 9e-16
 Identities = 31/229 (13%), Positives = 64/229 (27%), Gaps = 43/229 (18%)

Query: 94  GNLSNLQYLDLSWIDCRLH-VDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152
                +Q   +      L    + + L  ++ L  +D     +         +   L  +
Sbjct: 545 DTGPKIQIFYMG--YNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA--FGTNVKLTDL 600

Query: 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFH 212
            L YNQ +            ++ +  SHN+     P                        
Sbjct: 601 KLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIF--------------------- 638

Query: 213 QLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS----AAL 268
                +   +  + S+DFS  K+  +   +      Y      ++ LS+ +I        
Sbjct: 639 -----NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF 693

Query: 269 GKLSSLRNLDFSLNML-------NGSIPLSLGQISHLEYLDLSNNKFVT 310
              S +  +  S N++             +      L  +DL  NK  +
Sbjct: 694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 76.5 bits (188), Expect = 1e-15
 Identities = 46/292 (15%), Positives = 83/292 (28%), Gaps = 26/292 (8%)

Query: 23  ALLKLKRNLKDLSNCLASWNIGDGDCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAED 82
            L +    +KD     A W   DG   ++     NN T H L  N               
Sbjct: 260 QLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINN-TIHSLNWNFNKEL---------- 308

Query: 83  DDHYMRSKLVVGNLSNLQYLDLSWIDCRLHV---DSLSWLSSLLLLEHIDLGQVHL-GKA 138
           D    +  + + N   +  L L+           D++  L+ L   + +  G        
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLA--GFGAKGRVPDAIGQLTEL---KVLSFGTHSETVSG 363

Query: 139 SDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELS 198
                  L         +          L     L   DL  +  N        K +   
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 199 SFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLI 258
           S     +  +      I  +  RL KL  I F++   + D   V          A     
Sbjct: 424 SLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVD------WEDANSDYA 477

Query: 259 LSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
             +     +   L  L +++         +P  L  +  L+ L+++ N+ ++
Sbjct: 478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.5 bits (170), Expect = 2e-13
 Identities = 28/180 (15%), Positives = 62/180 (34%), Gaps = 25/180 (13%)

Query: 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQ 213
           L+    +G++P  +G LT LK +    +  + T  G L    EL+  +       +R H 
Sbjct: 330 LAGFGAKGRVPDAIGQLTELKVLSFGTH--SETVSGRLFGDEELTPDMSEERKHRIRMH- 386

Query: 214 LIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS---AALGK 270
                     +L   D     ++++         +  +     +     +I+    A+ +
Sbjct: 387 YKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQR 446

Query: 271 LSSLRNLDFSLNMLNG-------------------SIPLSLGQISHLEYLDLSNNKFVTK 311
           L+ L+ + F+ +                       +  LS   +  L  ++L N   +T+
Sbjct: 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ 506

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 88.6 bits (220), Expect = 9e-20
 Identities = 46/229 (20%), Positives = 78/229 (34%), Gaps = 20/229 (8%)

Query: 89  SKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDC--WIYSL 146
            +    +L  L+ L L+               +L  L ++DL +  L  +  C       
Sbjct: 320 KQFPTLDLPFLKSLTLT----MNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT 375

Query: 147 RHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQF-NFTSPGWLSKLNELSSFLLNLV 205
             L  + LS+N     + +    L  L+ +D  H+     T       L +L    L++ 
Sbjct: 376 NSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY--LDIS 432

Query: 206 SCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS 265
                        F+ L  L ++  +      +     ++F+   T  L  L LS CQ+ 
Sbjct: 433 YT--NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS--NVFA--NTTNLTFLDLSKCQLE 486

Query: 266 A----ALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
                    L  L+ L+ S N L         Q+  L  LD S N+  T
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 81.2 bits (201), Expect = 3e-17
 Identities = 46/219 (21%), Positives = 77/219 (35%), Gaps = 40/219 (18%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCW-IYSLRHLFFIV 153
             ++L++LDLS+    +   +   L  L   +H+D     L + ++     SL  L ++ 
Sbjct: 374 GTNSLRHLDLSFNGAIIMSANFMGLEEL---QHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430

Query: 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQ 213
           +SY   +         LTSL  + ++ N F   +                          
Sbjct: 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL------------------------- 465

Query: 214 LIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS----AALG 269
                F     LT +D S  +L Q    V D         L  L +SH  +     +   
Sbjct: 466 --SNVFANTTNLTFLDLSKCQLEQISWGVFDTLH-----RLQLLNMSHNNLLFLDSSHYN 518

Query: 270 KLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
           +L SL  LD S N +  S  +       L + +L+NN  
Sbjct: 519 QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 77.0 bits (190), Expect = 6e-16
 Identities = 45/216 (20%), Positives = 78/216 (36%), Gaps = 10/216 (4%)

Query: 97  SNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSY 156
           S+ + +DLS+    L +      S+   L+ +DL +  +    D   + L HL  ++L+ 
Sbjct: 32  SSTKNIDLSF--NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89

Query: 157 NQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIP 216
           N  Q   P +   LTSL+ +     +        + +L  L    LN+    +   +L P
Sbjct: 90  NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK--LNVAHNFIHSCKL-P 146

Query: 217 TSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS---AALGKLSS 273
             F  L  L  +D S   +       L           +SL +S   I        +   
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN-PQVNLSLDMSLNPIDFIQDQAFQGIK 205

Query: 274 LRNLDFSLNMLNGSIP-LSLGQISHLEYLDLSNNKF 308
           L  L    N  + +I    L  ++ L    L   +F
Sbjct: 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 36/173 (20%), Positives = 58/173 (33%), Gaps = 15/173 (8%)

Query: 145 SLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNL 204
           +   L ++ LS  + +         L  L  + L+ N     SPG  S L  L +  L  
Sbjct: 54  NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN--LVA 111

Query: 205 VSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQI 264
           V    +   L      +L  L  ++ +   +     ++   FS      LV + LS+  I
Sbjct: 112 VET--KLASLESFPIGQLITLKKLNVAHNFIHS--CKLPAYFS--NLTNLVHVDLSYNYI 165

Query: 265 S----AALGKLSSLRNLDFSLNMLN---GSIPLSLGQISHLEYLDLSNNKFVT 310
                  L  L     ++ SL+M       I     Q   L  L L  N   +
Sbjct: 166 QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSS 218

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.1 bits (172), Expect = 1e-13
 Identities = 45/240 (18%), Positives = 73/240 (30%), Gaps = 27/240 (11%)

Query: 93  VGNLSNLQYLDLS-----WIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLR 147
                 L  L L          +  + +L+ L    L+      + +L       +  L 
Sbjct: 200 AFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC 259

Query: 148 HLFFIVL--SYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPG-WLSKLNELS------ 198
            +       +Y             L ++  + L+     +        K   LS      
Sbjct: 260 DVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL 319

Query: 199 -----SFLLNLVSCMVRFHQL-IPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTY 252
                  L  L S  +  ++  I    + L  L+ +D S   LS         +S  GT 
Sbjct: 320 KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCS---YSDLGTN 376

Query: 253 ALVSLILSHCQI---SAALGKLSSLRNLDFSLNMLNGSIPLS-LGQISHLEYLDLSNNKF 308
           +L  L LS       SA    L  L++LDF  + L      S    +  L YLD+S    
Sbjct: 377 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.1 bits (159), Expect = 7e-12
 Identities = 34/228 (14%), Positives = 73/228 (32%), Gaps = 44/228 (19%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIV 153
             L++L+ L     + +L       +  L+ L+ ++                        
Sbjct: 101 SGLTSLENLVAV--ETKLASLESFPIGQLITLKKLN------------------------ 134

Query: 154 LSYNQFQG-KIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFH 212
           +++N     K+P+   NLT+L  +DLS+N     +   L  L E     L+L   +    
Sbjct: 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID 194

Query: 213 QLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS------- 265
            +   +F +  KL  +       S +I +            L    L   +         
Sbjct: 195 FIQDQAF-QGIKLHELTLRGNFNSSNIMKT----CLQNLAGLHVHRLILGEFKDERNLEI 249

Query: 266 ---AALGKLSSLRNLDFSLNMLN--GSIPLSLGQISHLEYLDLSNNKF 308
              + +  L  +   +F L   N      +    ++++  + L+    
Sbjct: 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI 297

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 3/111 (2%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152
             L++L  L ++        ++LS   ++   L  +DL +  L + S     +L  L  +
Sbjct: 445 LGLTSLNTLKMA--GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502

Query: 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLN 203
            +S+N       S    L SL  +D S N+   +          L+ F L 
Sbjct: 503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLT 553

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 80.6 bits (199), Expect = 6e-17
 Identities = 51/234 (21%), Positives = 89/234 (38%), Gaps = 23/234 (9%)

Query: 96  LSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLS 155
            S++++LDLS     +   +     +L  L+ ++L    + K +D   Y L +L  + LS
Sbjct: 265 RSSVRHLDLSH--GFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322

Query: 156 YNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSC---MVRFH 212
           YN       S    L  +  IDL  N            L +L +  L+L       + F 
Sbjct: 323 YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT--LDLRDNALTTIHFI 380

Query: 213 QLIPTSFIRLCKLTSIDFSSVKLSQ------DISQVLDIFSAYGTYALVSLILSHCQIS- 265
             IP  F+   KL ++   ++  +        +  +  ++       L  LIL+  + S 
Sbjct: 381 PSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS 440

Query: 266 ----AALGKLSSLRNLDFSLNMLNGSIPLSL-----GQISHLEYLDLSNNKFVT 310
                   +  SL  L    NML  +    L       +SHL+ L L++N   +
Sbjct: 441 CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS 494

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 78.3 bits (193), Expect = 3e-16
 Identities = 45/237 (18%), Positives = 80/237 (33%), Gaps = 27/237 (11%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVL 154
            L +L+ L+L+    +++  +      L  L+ ++L    LG+      Y L  + +I L
Sbjct: 288 TLKDLKVLNLA--YNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345

Query: 155 SYNQFQGKIPSTLGNLTSLKQIDLSHNQFN-----------FTSPGWLSKLNELSSFLLN 203
             N        T   L  L+ +DL  N              F S   L  L +++     
Sbjct: 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANL 405

Query: 204 LVSCMVRFHQLIPTSFI-RLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHC 262
           +     R   L    F+ R+  L  +  +  +     S      +     +L  L L   
Sbjct: 406 IHLSENRLENLDILYFLLRVPHLQILILNQNR----FSSCSGDQTPSENPSLEQLFLGEN 461

Query: 263 QISA---------ALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
            +               LS L+ L  + N LN   P     ++ L  L L++N+   
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV 518

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 74.1 bits (182), Expect = 9e-15
 Identities = 51/238 (21%), Positives = 83/238 (34%), Gaps = 31/238 (13%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVL 154
            L NLQ L+LS     L     S    L  + +IDL + H+    D     L  L  + L
Sbjct: 312 GLDNLQVLNLS--YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369

Query: 155 SYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLS-----------KLNELSSFLLN 203
             N       +T+  + S+  I LS N+        L+           +  ++  FLL 
Sbjct: 370 RDNAL-----TTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLR 424

Query: 204 LVSCMV------RFHQLIPTS-FIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVS 256
           +    +      RF              L  +      L       L      G   L  
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484

Query: 257 LILSHCQISA----ALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
           L L+H  +++        L++LR L  + N L   +  +    ++LE LD+S N+ + 
Sbjct: 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLP-ANLEILDISRNQLLA 540

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.4 bits (162), Expect = 3e-12
 Identities = 39/239 (16%), Positives = 70/239 (29%), Gaps = 29/239 (12%)

Query: 94  GNLSNLQYLDLSWID-CRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152
           G L++L+ +D S      +    L  L    L            + S  W   +     +
Sbjct: 145 GKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204

Query: 153 VLSY-----------------NQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLN 195
           VL                   N        +L     +       +          + L 
Sbjct: 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA 264

Query: 196 ELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALV 255
             S   L+L         L    F  L  L  ++ +  K+++     +   + YG   L 
Sbjct: 265 RSSVRHLDLSHG--FVFSLNSRVFETLKDLKVLNLAYNKINK-----IADEAFYGLDNLQ 317

Query: 256 SLILSHCQI----SAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
            L LS+  +    S+    L  +  +D   N +      +   +  L+ LDL +N   T
Sbjct: 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 60.6 bits (147), Expect = 2e-10
 Identities = 46/228 (20%), Positives = 76/228 (33%), Gaps = 30/228 (13%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIV 153
           G ++  ++ +L+ +              L   E + L   ++   +      L  L  + 
Sbjct: 6   GRIAFYRFCNLTQV-----------PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLE 54

Query: 154 LSYNQFQGKI-PSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFH 212
           L        I      NL +L+ +DL  ++  F  P     L  L    L L  C +   
Sbjct: 55  LGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE--LRLYFCGLSDA 112

Query: 213 QLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA----AL 268
            L    F  L  LT +D S  ++          F      +L S+  S  QI       L
Sbjct: 113 VLKDGYFRNLKALTRLDLSKNQIRSLYLH--PSFG--KLNSLKSIDFSSNQIFLVCEHEL 168

Query: 269 GKLS--SLRNLDFSLNMLNGSIPLSLGQIS------HLEYLDLSNNKF 308
             L   +L     + N L   + +  G+         LE LD+S N +
Sbjct: 169 EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 77.8 bits (192), Expect = 3e-16
 Identities = 43/221 (19%), Positives = 75/221 (33%), Gaps = 20/221 (9%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLG--QVHLGKASDCWIYSLRHLFFI 152
            L +L+ L  +         +      L  LE +DL    +          +    L ++
Sbjct: 323 KLKSLKRLTFT----SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQF-NFTSPGWLSKLNELSSFLLNLVSCMVRF 211
            LS+N     + S    L  L+ +D  H+     +       L  L    L++       
Sbjct: 379 DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY--LDISHT--HT 433

Query: 212 HQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA----A 267
                  F  L  L  +  +     ++     DIF+      L  L LS CQ+      A
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLP--DIFT--ELRNLTFLDLSQCQLEQLSPTA 489

Query: 268 LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
              LSSL+ L+ + N L         +++ L+ + L  N +
Sbjct: 490 FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 66.7 bits (163), Expect = 2e-12
 Identities = 36/171 (21%), Positives = 58/171 (33%), Gaps = 15/171 (8%)

Query: 145 SLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNL 204
           S   L  + LS  + Q        +L+ L  + L+ N     + G  S L+ L    L  
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK--LVA 107

Query: 205 VSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQI 264
           V        L       L  L  ++ +   +     ++ + FS      L  L LS  +I
Sbjct: 108 VET--NLASLENFPIGHLKTLKELNVAHNLIQSF--KLPEYFS--NLTNLEHLDLSSNKI 161

Query: 265 SA----ALGKLSSLRNLDFSLNMLN---GSIPLSLGQISHLEYLDLSNNKF 308
            +     L  L  +  L+ SL++       I     +   L  L L NN  
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 212

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.1 bits (159), Expect = 5e-12
 Identities = 40/218 (18%), Positives = 70/218 (32%), Gaps = 25/218 (11%)

Query: 98  NLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASD-CWIYSLRHLFFIVLSY 156
            ++   L+++D     D +   + L  +    L  V + +  D  + +  +HL  +   +
Sbjct: 258 TIEEFRLAYLDY-YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF 316

Query: 157 NQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPG-WLSKLNELSSFLLNLVSCMVRFHQLI 215
            QF          L SLK++  + N+         L  L  L     +L    + F    
Sbjct: 317 GQFPT------LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL-----DLSRNGLSFKGCC 365

Query: 216 PTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA-----ALGK 270
             S      L  +D S   +   +S             L  L   H  +           
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQ-----LEHLDFQHSNLKQMSEFSVFLS 419

Query: 271 LSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
           L +L  LD S      +       +S LE L ++ N F
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 64.0 bits (156), Expect = 1e-11
 Identities = 40/226 (17%), Positives = 67/226 (29%), Gaps = 25/226 (11%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIV 153
            +   LQ LDLS   C +         SL  L  + L    +   +      L  L  +V
Sbjct: 49  FSFPELQVLDLSR--CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106

Query: 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGW-LSKLNELSSFLLNLVSCMVRFH 212
                        +G+L +LK+++++HN           S L  L    L+L S   +  
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH--LDLSSN--KIQ 162

Query: 213 QLIPTSFIRLCKLT----SIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA-- 266
            +  T    L ++     S+D S   ++                 L  L L +   S   
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR------LHKLTLRNNFDSLNV 216

Query: 267 ---ALGKLSSLRNLDFSLNMLNGS---IPLSLGQISHLEYLDLSNN 306
               +  L+ L      L                +  L  L +   
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.4 bits (152), Expect = 5e-11
 Identities = 52/227 (22%), Positives = 80/227 (35%), Gaps = 21/227 (9%)

Query: 92  VVGNLSNLQYLDLSW--IDCRLHVDSLSWLSSL-LLLEHIDLGQVHLGKASDCWIYSLRH 148
              NL+NL++LDLS   I   ++   L  L  + LL   +DL    +        +    
Sbjct: 144 YFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP-GAFKEIR 201

Query: 149 LFFIVLSYNQFQGKIPST-LGNLTSLKQIDL------SHNQFNFTSPGWLSKLNELSSFL 201
           L  + L  N     +  T +  L  L+   L      +           L  L  L+   
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 202 LNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSH 261
             L + +  +   I   F  L  ++S    SV     I +V D    +G   L  +    
Sbjct: 262 FRL-AYLDYYLDDIIDLFNCLTNVSSFSLVSVT----IERVKDFSYNFGWQHLELVNCKF 316

Query: 262 CQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
            Q      KL SL+ L F+ N    +       +  LE+LDLS N  
Sbjct: 317 GQFPT--LKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGL 359

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.0 bits (151), Expect = 7e-11
 Identities = 34/164 (20%), Positives = 56/164 (34%), Gaps = 18/164 (10%)

Query: 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQ 213
           LS+N  +     +  +   L+ +DLS  +      G    L+ LS+  L L         
Sbjct: 35  LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST--LILTGN--PIQS 90

Query: 214 LIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS-----AAL 268
           L   +F  L  L  +      L+   +  +          L  L ++H  I         
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFPIG-----HLKTLKELNVAHNLIQSFKLPEYF 145

Query: 269 GKLSSLRNLDFSLNMLNGSIPLSLGQISHLEY----LDLSNNKF 308
             L++L +LD S N +       L  +  +      LDLS N  
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.0 bits (143), Expect = 7e-10
 Identities = 33/151 (21%), Positives = 61/151 (40%), Gaps = 16/151 (10%)

Query: 163 IPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRL 222
           IP  L    S K +DLS N              EL    L+L  C      +   ++  L
Sbjct: 22  IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQV--LDLSRC--EIQTIEDGAYQSL 75

Query: 223 CKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA----ALGKLSSLRNLD 278
             L+++  +   +              G  +L  L+     +++     +G L +L+ L+
Sbjct: 76  SHLSTLILTGNPIQSLALGAFS-----GLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 279 FSLNMLN-GSIPLSLGQISHLEYLDLSNNKF 308
            + N++    +P     +++LE+LDLS+NK 
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.6 bits (142), Expect = 9e-10
 Identities = 41/228 (17%), Positives = 72/228 (31%), Gaps = 33/228 (14%)

Query: 98  NLQYLDLSWIDCRLHV-----DSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152
            L  L L      L+V       L+ L    L+      + +L K     +  L +L   
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 153 VLSYNQ---FQGKIPSTLGNLTSLKQIDLSHNQFNFTSPG-WLSKLNELSSFLLNLVSCM 208
                    +   I      LT++    L            +      L   L+N     
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE--LVNC---- 314

Query: 209 VRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQI---- 264
               +      ++L  L  + F+S K         + FS     +L  L LS   +    
Sbjct: 315 ----KFGQFPTLKLKSLKRLTFTSNKGG-------NAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 265 --SAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
             S +    +SL+ LD S N +  ++  +   +  LE+LD  ++    
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ 410

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 40/201 (19%), Positives = 76/201 (37%), Gaps = 14/201 (6%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVL 154
           +L +L++LDLS                   L+++DL    +   S      L  L  +  
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDF 403

Query: 155 SYNQFQGKIP-STLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQ 213
            ++  +     S   +L +L  +D+SH        G  + L+ L   +L +     + + 
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE--VLKMAGNSFQEN- 460

Query: 214 LIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA----ALG 269
            +P  F  L  LT +D S  +L Q      +        +L  L ++  Q+ +       
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFN-----SLSSLQVLNMASNQLKSVPDGIFD 515

Query: 270 KLSSLRNLDFSLNMLNGSIPL 290
           +L+SL+ +    N  + S P 
Sbjct: 516 RLTSLQKIWLHTNPWDCSCPR 536

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 75.1 bits (185), Expect = 2e-15
 Identities = 44/220 (20%), Positives = 77/220 (35%), Gaps = 15/220 (6%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVL 154
            LSNL  LD+S  + ++ +        L  L+ +++G   L   S      L  L  + L
Sbjct: 102 GLSNLTKLDIS--ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL 159

Query: 155 SYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQL 214
                       L +L  L  + L H   N        +L  L    L +      +   
Sbjct: 160 EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV--LEISHW--PYLDT 215

Query: 215 IPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA----ALGK 270
           +  + +    LTS+  +   L+      +          L  L LS+  IS      L +
Sbjct: 216 MTPNCLYGLNLTSLSITHCNLTAVPYLAVR-----HLVYLRFLNLSYNPISTIEGSMLHE 270

Query: 271 LSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
           L  L+ +      L    P +   +++L  L++S N+  T
Sbjct: 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 70.1 bits (172), Expect = 1e-13
 Identities = 41/221 (18%), Positives = 82/221 (37%), Gaps = 17/221 (7%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVL 154
           +  +L+ L+L+  +  +        ++L  L  + L    L          L +L  + +
Sbjct: 54  SFPHLEELELN--ENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111

Query: 155 SYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQL 214
           S N+    +     +L +LK +++  N   + S    S LN L    L L  C      +
Sbjct: 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ--LTLEKC--NLTSI 167

Query: 215 IPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQ----ISAALGK 270
              +   L  L  +    + ++               Y L  L +SH      ++     
Sbjct: 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFK-----RLYRLKVLEISHWPYLDTMTPNCLY 222

Query: 271 LSSLRNLDFSLNMLNGSIP-LSLGQISHLEYLDLSNNKFVT 310
             +L +L  +   L  ++P L++  + +L +L+LS N   T
Sbjct: 223 GLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIST 262

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 64.7 bits (158), Expect = 7e-12
 Identities = 36/195 (18%), Positives = 64/195 (32%), Gaps = 15/195 (7%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVL 154
            L++L+ L L    C L       LS L  L  + L  +++    D     L  L  + +
Sbjct: 150 GLNSLEQLTLE--KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207

Query: 155 SYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQL 214
           S+  +   +        +L  + ++H          +  L  L    LNL         +
Sbjct: 208 SHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRF--LNLSYN--PISTI 263

Query: 215 IPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA----ALGK 270
             +    L +L  I     +L+  +      F   G   L  L +S  Q++         
Sbjct: 264 EGSMLHELLRLQEIQLVGGQLA-VVEP--YAFR--GLNYLRVLNVSGNQLTTLEESVFHS 318

Query: 271 LSSLRNLDFSLNMLN 285
           + +L  L    N L 
Sbjct: 319 VGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 35/159 (22%), Positives = 57/159 (35%), Gaps = 13/159 (8%)

Query: 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQ 213
           L  N+ +        +   L++++L+ N  +   PG  + L  L +  L L S   R   
Sbjct: 39  LGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRT--LGLRSN--RLKL 94

Query: 214 LIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS----AALG 269
           +    F  L  LT +D S  K+      +L  +     Y L SL +    +      A  
Sbjct: 95  IPLGVFTGLSNLTKLDISENKIV-----ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149

Query: 270 KLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
            L+SL  L      L      +L  +  L  L L +   
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 9/105 (8%)

Query: 210 RFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA--- 266
           R   L    F     L  ++ +   +S  +      F+    + L +L L   ++     
Sbjct: 43  RIKTLNQDEFASFPHLEELELNENIVS-AVEP--GAFN--NLFNLRTLGLRSNRLKLIPL 97

Query: 267 -ALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
                LS+L  LD S N +   +      + +L+ L++ +N  V 
Sbjct: 98  GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY 142

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 73.9 bits (182), Expect = 3e-15
 Identities = 40/219 (18%), Positives = 76/219 (34%), Gaps = 25/219 (11%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVL 154
           +  N++ LDLS     L   S + L+    LE ++L    L +  D  + SL  L  + L
Sbjct: 32  SAWNVKELDLS--GNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87

Query: 155 SYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQL 214
           + N         L    S++ +  ++N  +  S         +      L +   +   L
Sbjct: 88  NNNYV-----QELLVGPSIETLHAANNNISRVSCSRGQGKKNI-----YLANN--KITML 135

Query: 215 IPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGT-YALVSLILSHCQISA--ALGKL 271
                    ++  +D    ++       ++      +   L  L L +  I         
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEIDT-----VNFAELAASSDTLEHLNLQYNFIYDVKGQVVF 190

Query: 272 SSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
           + L+ LD S N L   +       + + ++ L NNK V 
Sbjct: 191 AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL 228

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.9 bits (151), Expect = 3e-11
 Identities = 31/167 (18%), Positives = 69/167 (41%), Gaps = 17/167 (10%)

Query: 145 SLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNL 204
           +        ++ +  +  + S   +  ++K++DLS N  +  S   L+   +L    LNL
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL--LNL 65

Query: 205 VSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQI 264
            S     ++ +      L  L ++D ++  + +     L +       ++ +L  ++  I
Sbjct: 66  SSN--VLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGP-----SIETLHAANNNI 111

Query: 265 SA-ALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
           S  +  +    +N+  + N +     L  G  S ++YLDL  N+  T
Sbjct: 112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.2 bits (149), Expect = 7e-11
 Identities = 32/192 (16%), Positives = 70/192 (36%), Gaps = 24/192 (12%)

Query: 121 SLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSH 180
           +    +   +    L +A      S  ++  + LS N       + L   T L+ ++LS 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 181 NQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDIS 240
           N         L +  +L S L  L +  +  + +     +    + ++  ++  +S  +S
Sbjct: 68  NV--------LYETLDLES-LSTLRTLDLNNNYV--QELLVGPSIETLHAANNNIS-RVS 115

Query: 241 QVLDIFSAYGTYALVSLILSHCQIS----AALGKLSSLRNLDFSLNMLNG-SIPLSLGQI 295
                          ++ L++ +I+       G  S ++ LD  LN ++  +        
Sbjct: 116 --CSRGQ-----GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 296 SHLEYLDLSNNK 307
             LE+L+L  N 
Sbjct: 169 DTLEHLNLQYNF 180

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.1 bits (141), Expect = 7e-10
 Identities = 36/222 (16%), Positives = 82/222 (36%), Gaps = 27/222 (12%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIV 153
            +LS L+ LDL+        + +  L     +E +     ++ + S       ++++   
Sbjct: 77  ESLSTLRTLDLNN-------NYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIY--- 126

Query: 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWL-SKLNELSSFLLNLVSCMVRFH 212
           L+ N+         G  + ++ +DL  N+ +  +   L +  + L    LNL       +
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH--LNLQYN--FIY 182

Query: 213 QLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS---AALG 269
            +         KL ++D SS KL+  +              +  + L + ++     AL 
Sbjct: 183 DVKGQVV--FAKLKTLDLSSNKLAF-MGPEFQ-----SAAGVTWISLRNNKLVLIEKALR 234

Query: 270 KLSSLRNLDFSLNMLN-GSIPLSLGQISHLEYLDLSNNKFVT 310
              +L + D   N  + G++     +   ++ +     K +T
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 7/115 (6%)

Query: 93  VGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152
             +   L++L+L +    ++   +        L+ +DL    L         S   + +I
Sbjct: 165 AASSDTLEHLNLQY--NFIY--DVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWI 219

Query: 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTS-PGWLSKLNELSSFLLNLVS 206
            L  N+    I   L    +L+  DL  N F+  +   + SK   + +     V 
Sbjct: 220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 8/113 (7%)

Query: 89  SKLVVGNLSNLQYLDLSWIDCRL-HVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLR 147
             L  G  S +QYLDL      +  V+     +S   LEH++L    +            
Sbjct: 136 RDLDEGCRSRVQYLDLK--LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV--VFA 191

Query: 148 HLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSP--GWLSKLNELS 198
            L  + LS N+    +     +   +  I L +N+         +   L    
Sbjct: 192 KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFD 243

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 73.0 bits (179), Expect = 1e-14
 Identities = 40/220 (18%), Positives = 76/220 (34%), Gaps = 25/220 (11%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIV 153
            +  N++ LDLS     L   S + L+    LE ++L    L +  D  + SL  L  + 
Sbjct: 31  QSAWNVKELDLS--GNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLD 86

Query: 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQ 213
           L+ N         L    S++ +  ++N  +  S         +      L +   +   
Sbjct: 87  LNNNYV-----QELLVGPSIETLHAANNNISRVSCSRGQGKKNI-----YLANN--KITM 134

Query: 214 LIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGT-YALVSLILSHCQISA--ALGK 270
           L         ++  +D    ++       ++      +   L  L L +  I        
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNEIDT-----VNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189

Query: 271 LSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
            + L+ LD S N L   +       + + ++ L NNK V 
Sbjct: 190 FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL 228

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 65.6 bits (160), Expect = 4e-12
 Identities = 29/219 (13%), Positives = 59/219 (26%), Gaps = 16/219 (7%)

Query: 93  VGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152
             +   L++L+L      ++   +        L+ +DL    L         S   + +I
Sbjct: 165 AASSDTLEHLNLQ--YNFIY--DVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWI 219

Query: 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTS-PGWLSKLNELSSFLLNLVSCMVRF 211
            L  N+    I   L    +L+  DL  N F+  +   + SK   + +            
Sbjct: 220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ------TV 272

Query: 212 HQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSH---CQISAAL 268
            +L   +       T   + +       +   D   A        L        ++    
Sbjct: 273 KKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECER 332

Query: 269 GKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNK 307
              +  R +D         I     +      L+     
Sbjct: 333 ENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKA 371

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.6 bits (147), Expect = 2e-10
 Identities = 32/192 (16%), Positives = 70/192 (36%), Gaps = 24/192 (12%)

Query: 121 SLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSH 180
           +    +   +    L +A      S  ++  + LS N       + L   T L+ ++LS 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 181 NQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDIS 240
           N         L +  +L S L  L +  +  + +     +    + ++  ++  +S+   
Sbjct: 68  NV--------LYETLDLES-LSTLRTLDLNNNYV--QELLVGPSIETLHAANNNISR--- 113

Query: 241 QVLDIFSAYGTYALVSLILSHCQIS----AALGKLSSLRNLDFSLNMLNG-SIPLSLGQI 295
                 S        ++ L++ +I+       G  S ++ LD  LN ++  +        
Sbjct: 114 -----VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 296 SHLEYLDLSNNK 307
             LE+L+L  N 
Sbjct: 169 DTLEHLNLQYNF 180

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.0 bits (135), Expect = 5e-09
 Identities = 27/161 (16%), Positives = 53/161 (32%), Gaps = 17/161 (10%)

Query: 163 IPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRL 222
           I     N    K   ++ +               +    L+L        Q+        
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKE--LDLSGN--PLSQISAADLAPF 57

Query: 223 CKLTSIDFSSVKLSQDIS-------QVLD-----IFSAYGTYALVSLILSHCQISA-ALG 269
            KL  ++ SS  L + +        + LD     +       ++ +L  ++  IS  +  
Sbjct: 58  TKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS 117

Query: 270 KLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
           +    +N+  + N +     L  G  S ++YLDL  N+  T
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.9 bits (101), Expect = 9e-05
 Identities = 27/221 (12%), Positives = 62/221 (28%), Gaps = 16/221 (7%)

Query: 89  SKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYS-LR 147
           S++        + + L+  + ++ +           ++++DL    +   +   + +   
Sbjct: 112 SRVSCSRGQGKKNIYLA--NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 148 HLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSC 207
            L  + L YN     +   +     LK +DLS N+  F  P        ++   ++L + 
Sbjct: 170 TLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAFMGPE-FQSAAGVTW--ISLRNN 224

Query: 208 MVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA 267
            +     I  +      L   D           +  D FS       V+           
Sbjct: 225 KLVL---IEKALRFSQNLEHFDLRGNGFHCGTLR--DFFSKNQRVQTVAKQTVKKLTGQN 279

Query: 268 LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
             + +      +          L       L  L    +  
Sbjct: 280 EEECTVPTLGHYGAYCCE---DLPAPFADRLIALKRKEHAL 317

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 71.4 bits (176), Expect = 2e-14
 Identities = 39/215 (18%), Positives = 74/215 (34%), Gaps = 26/215 (12%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVL 154
           +L+      L        V  +     L  +  + +    +       I  L +L ++ L
Sbjct: 20  DLAEGIRAVLQKA----SVTDVVTQEELESITKLVVAGEKVASIQG--IEYLTNLEYLNL 73

Query: 155 SYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQL 214
           + NQ     P  L NL  L  + +  N+   T    L  L  L    L L         +
Sbjct: 74  NGNQITDISP--LSNLVKLTNLYIGTNK--ITDISALQNLTNLRE--LYLNED--NISDI 125

Query: 215 IPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS--AALGKLS 272
            P     L K+ S++  +     D+S + ++        L  L ++  ++     +  L+
Sbjct: 126 SP--LANLTKMYSLNLGANHNLSDLSPLSNMTG------LNYLTVTESKVKDVTPIANLT 177

Query: 273 SLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNK 307
            L +L  + N +    P  L  ++ L Y     N+
Sbjct: 178 DLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQ 210

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 67.6 bits (166), Expect = 5e-13
 Identities = 54/217 (24%), Positives = 94/217 (43%), Gaps = 26/217 (11%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIV 153
            NL+ +  L+L         D LS LS++  L ++ + +  +   +   I +L  L+ + 
Sbjct: 129 ANLTKMYSLNLG--ANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLS 183

Query: 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQF-NFTSPGWLSKLNELSSFLLNLVSCMVRFH 212
           L+YNQ +   P  L +LTSL       NQ  + T    +++LN L     N ++ +    
Sbjct: 184 LNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVANMTRLNSLK-IGNNKITDL---- 236

Query: 213 QLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS--AALGK 270
               +    L +LT ++  + ++S       DI +      L  L +   QIS  + L  
Sbjct: 237 ----SPLANLSQLTWLEIGTNQIS-------DINAVKDLTKLKMLNVGSNQISDISVLNN 285

Query: 271 LSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNK 307
           LS L +L  + N L       +G +++L  L LS N 
Sbjct: 286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.6 bits (161), Expect = 2e-12
 Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 26/216 (12%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIV 153
            NL  L  L +        +  +S L +L  L  + L + ++   S   + +L  ++ + 
Sbjct: 85  SNLVKLTNLYIGTN----KITDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLN 138

Query: 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQ 213
           L  N       S L N+T L  + ++ ++    +P  ++ L +L S  L+L    +    
Sbjct: 139 LGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS--LSLNYNQIED-- 191

Query: 214 LIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS--AALGKL 271
              +    L  L        +++       DI        L SL + + +I+  + L  L
Sbjct: 192 --ISPLASLTSLHYFTAYVNQIT-------DITPVANMTRLNSLKIGNNKITDLSPLANL 242

Query: 272 SSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNK 307
           S L  L+   N ++  I  ++  ++ L+ L++ +N+
Sbjct: 243 SQLTWLEIGTNQIS-DIN-AVKDLTKLKMLNVGSNQ 276

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.1 bits (131), Expect = 1e-08
 Identities = 39/194 (20%), Positives = 82/194 (42%), Gaps = 23/194 (11%)

Query: 93  VGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152
           + NL++L  L L+    ++    +S L+SL  L +       +   +   + ++  L  +
Sbjct: 173 IANLTDLYSLSLN--YNQIE--DISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSL 226

Query: 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFH 212
            +  N+     P  L NL+ L  +++  NQ   +    +  L +L    LN+ S  +   
Sbjct: 227 KIGNNKITDLSP--LANLSQLTWLEIGTNQI--SDINAVKDLTKLKM--LNVGSNQIS-- 278

Query: 213 QLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS--AALGK 270
               +    L +L S+  ++ +L  +  +V+   +      L +L LS   I+    L  
Sbjct: 279 --DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN-----LTTLFLSQNHITDIRPLAS 331

Query: 271 LSSLRNLDFSLNML 284
           LS + + DF+  ++
Sbjct: 332 LSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 23/148 (15%), Positives = 52/148 (35%), Gaps = 19/148 (12%)

Query: 165 STLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCK 224
               +L    +  L              +L  ++   L +    V            L  
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVT--QEELESITK--LVVAGEKVA----SIQGIEYLTN 67

Query: 225 LTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS--AALGKLSSLRNLDFSLN 282
           L  ++ +  +++       DI        L +L +   +I+  +AL  L++LR L  + +
Sbjct: 68  LEYLNLNGNQIT-------DISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNED 120

Query: 283 MLNGSIPLSLGQISHLEYLDLSNNKFVT 310
            ++   P  L  ++ +  L+L  N  ++
Sbjct: 121 NISDISP--LANLTKMYSLNLGANHNLS 146

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 70.7 bits (174), Expect = 4e-14
 Identities = 33/222 (14%), Positives = 71/222 (31%), Gaps = 22/222 (9%)

Query: 93  VGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDC-WIYSLRHLFF 151
           +         D +         S    ++    +        L   +D     +      
Sbjct: 32  LSQWQRHYNADRNRWH------SAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVA 85

Query: 152 IVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRF 211
           + L       + P     L+ L+ + +         P  + +   L +  L L    +  
Sbjct: 86  LELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLET--LTLARNPL-- 139

Query: 212 HQLIPTSFIRLCKLTSIDFSS----VKLSQDISQVLDIFSAYGTYALVSLILSHCQIS-- 265
            + +P S   L +L  +   +     +L + ++         G   L SL L    I   
Sbjct: 140 -RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198

Query: 266 -AALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNN 306
            A++  L +L++L    + L+ ++  ++  +  LE LDL   
Sbjct: 199 PASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGC 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.9 bits (164), Expect = 8e-13
 Identities = 44/226 (19%), Positives = 80/226 (35%), Gaps = 29/226 (12%)

Query: 95  NLSNLQYLDLSWIDCRLHV--DSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152
                  L+L      L    D    LS L   +H+ +    L +  D  +     L  +
Sbjct: 79  TQPGRVALELR--SVPLPQFPDQAFRLSHL---QHMTIDAAGLMELPDT-MQQFAGLETL 132

Query: 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSF--LLNLVSCMVR 210
            L+ N  +  +P+++ +L  L+++ +         P  L+  +       L+NL S  + 
Sbjct: 133 TLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE 191

Query: 211 FHQL--IPTSFIRLCKLTSIDFSSVKLSQ---DISQVLDIFSAYGTYALVSLILSHC--- 262
           +  +  +P S   L  L S+   +  LS     I  +           L  L L  C   
Sbjct: 192 WTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHL---------PKLEELDLRGCTAL 242

Query: 263 -QISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNK 307
                  G  + L+ L         ++PL + +++ LE LDL    
Sbjct: 243 RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 20/147 (13%), Positives = 42/147 (28%), Gaps = 16/147 (10%)

Query: 167 LGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLT 226
             + +  + +    +         LS+     +   N              S  R     
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNR-----------WHSAWRQANSN 56

Query: 227 SIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS---AALGKLSSLRNLDFSLNM 283
           +    +      +    D+         V+L L    +        +LS L+++      
Sbjct: 57  NPQIETRTGRA-LKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG 115

Query: 284 LNGSIPLSLGQISHLEYLDLSNNKFVT 310
           L   +P ++ Q + LE L L+ N    
Sbjct: 116 LM-ELPDTMQQFAGLETLTLARNPLRA 141

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 34/215 (15%), Positives = 72/215 (33%), Gaps = 45/215 (20%)

Query: 93  VGNLSNLQYLDLSWIDCRLHV--DSLSWLSSL--LLLEHI--------DLGQVHLGKASD 140
           +   + L+ L L+     L     S++ L+ L  L +            L          
Sbjct: 123 MQQFAGLETLTLA--RNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGE-- 178

Query: 141 CWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSF 200
                L +L  + L +   +  +P+++ NL +LK + + ++  +      +  L +L   
Sbjct: 179 --HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEE- 233

Query: 201 LLNLVSCMVRFHQL--IPTSFIRLCKLTSIDFSS----VKLSQDISQVLDIFSAYGTYAL 254
            L+L  C      L   P  F     L  +        + L  DI ++           L
Sbjct: 234 -LDLRGC----TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL---------TQL 279

Query: 255 VSLILSHC----QISAALGKLSSLRNLDFSLNMLN 285
             L L  C    ++ + + +L +   +    ++  
Sbjct: 280 EKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 69.3 bits (170), Expect = 1e-13
 Identities = 51/223 (22%), Positives = 77/223 (34%), Gaps = 22/223 (9%)

Query: 97  SNLQYLDLSW--IDCRLHVDSLSWLSSL--LLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152
           S+   L+L    +   L       L+ L  L L    L        SD    SL++L   
Sbjct: 28  SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD-- 84

Query: 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQ-FNFTSPGWLSKLNELSSFLLNLVSCMVRF 211
            LS+N     + S    L  L+ +D  H+     +       L  L    L++       
Sbjct: 85  -LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY--LDISHT--HT 138

Query: 212 HQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA----A 267
                  F  L  L  +  +     ++     DIF+      L  L LS CQ+      A
Sbjct: 139 RVAFNGIFNGLSSLEVLKMAGNSFQENFLP--DIFT--ELRNLTFLDLSQCQLEQLSPTA 194

Query: 268 LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
              LSSL+ L+ S N            ++ L+ LD S N  +T
Sbjct: 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 52/221 (23%), Positives = 88/221 (39%), Gaps = 43/221 (19%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDC-WIYSLRHLFFIV 153
             ++L+YLDLS+        +   L     LEH+D    +L + S+     SLR+L ++ 
Sbjct: 76  GTTSLKYLDLSFNGVITMSSNFLGLEQ---LEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 132

Query: 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQ 213
           +S+   +         L+SL+ + ++ N F                              
Sbjct: 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ---------------------------EN 165

Query: 214 LIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA----ALG 269
            +P  F  L  LT +D S  +L Q +S     F+     +L  L +SH    +       
Sbjct: 166 FLPDIFTELRNLTFLDLSQCQLEQ-LSP--TAFN--SLSSLQVLNMSHNNFFSLDTFPYK 220

Query: 270 KLSSLRNLDFSLNMLNGSIPLSL--GQISHLEYLDLSNNKF 308
            L+SL+ LD+SLN +  +          S L +L+L+ N F
Sbjct: 221 CLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 70.3 bits (172), Expect = 1e-13
 Identities = 48/220 (21%), Positives = 76/220 (34%), Gaps = 28/220 (12%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIV 153
            N   L  L +S  +  L         +   L+++ L    L       I SL H     
Sbjct: 144 HNTPKLTTLSMS--NNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHAN--- 198

Query: 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQ 213
           +SYN       STL    +++++D SHN  N        +L  L     NL         
Sbjct: 199 VSYNLL-----STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD------- 246

Query: 214 LIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS---AALGK 270
                 +    L  +D S  +L +     +          L  L +S+ ++         
Sbjct: 247 --TAWLLNYPGLVEVDLSYNELEK-----IMYHPFVKMQRLERLYISNNRLVALNLYGQP 299

Query: 271 LSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
           + +L+ LD S N L   +  +  Q   LE L L +N  VT
Sbjct: 300 IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT 338

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 61.9 bits (150), Expect = 8e-11
 Identities = 33/216 (15%), Positives = 77/216 (35%), Gaps = 18/216 (8%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVL 154
            L+N + +     +  +     + L S   +E ++L  + + +           +  + +
Sbjct: 49  TLNNQKIVTFK--NSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYM 106

Query: 155 SYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQL 214
            +N  +   P    N+  L  + L  N  +    G      +L++  L++ +      ++
Sbjct: 107 GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT--LSMSNN--NLERI 162

Query: 215 IPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKLSSL 274
              +F     L ++  SS +L+     ++         +L    +S+  +S  L    ++
Sbjct: 163 EDDTFQATTSLQNLQLSSNRLTHVDLSLIP--------SLFHANVSYNLLS-TLAIPIAV 213

Query: 275 RNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
             LD S N +N    +       L  L L +N    
Sbjct: 214 EELDASHNSINV---VRGPVNVELTILKLQHNNLTD 246

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 61.5 bits (149), Expect = 9e-11
 Identities = 36/230 (15%), Positives = 74/230 (32%), Gaps = 28/230 (12%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIV 153
            +   ++ L+L+  D ++        +    ++ + +G   +         ++  L  +V
Sbjct: 72  DSFRQVELLNLN--DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129

Query: 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKL----------NELSSF--- 200
           L  N           N   L  + +S+N                       N L+     
Sbjct: 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS 189

Query: 201 -LLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLIL 259
            + +L    V ++ L  ++      +  +D S   ++                 L  L L
Sbjct: 190 LIPSLFHANVSYNLL--STLAIPIAVEELDASHNSINV--------VRGPVNVELTILKL 239

Query: 260 SHCQIS--AALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNK 307
            H  ++  A L     L  +D S N L   +     ++  LE L +SNN+
Sbjct: 240 QHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 60.3 bits (146), Expect = 2e-10
 Identities = 46/217 (21%), Positives = 75/217 (34%), Gaps = 31/217 (14%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVL 154
             ++LQ L LS    RL    LS + SL    H ++    L       +     +  +  
Sbjct: 169 ATTSLQNLQLS--SNRLTHVDLSLIPSL---FHANVSYNLLST-----LAIPIAVEELDA 218

Query: 155 SYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQL 214
           S+N            LT L    L HN    T   WL     L    ++L        ++
Sbjct: 219 SHNSINVVRGPVNVELTIL---KLQHNNL--TDTAWLLNYPGLVE--VDLSYN--ELEKI 269

Query: 215 IPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS---AALGKL 271
           +   F+++ +L  +  S+ +L   ++             L  L LSH  +        + 
Sbjct: 270 MYHPFVKMQRLERLYISNNRLV-ALNLYGQ-----PIPTLKVLDLSHNHLLHVERNQPQF 323

Query: 272 SSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
             L NL    N +     L L     L+ L LS+N +
Sbjct: 324 DRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.9 bits (145), Expect = 3e-10
 Identities = 31/196 (15%), Positives = 63/196 (32%), Gaps = 16/196 (8%)

Query: 119 LSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDL 178
           L    +   + +              +L +   +    +  +    + L +   ++ ++L
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 82

Query: 179 SHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQD 238
           +  Q         +  + +    L +         L P  F  +  LT +      LS  
Sbjct: 83  NDLQIEEIDTYAFAYAHTIQK--LYMGFN--AIRYLPPHVFQNVPLLTVLVLERNDLSS- 137

Query: 239 ISQVLDIFSAYGTYALVSLILSHCQISA----ALGKLSSLRNLDFSLNMLNGSIPLSLGQ 294
               L     + T  L +L +S+  +           +SL+NL  S N L     + L  
Sbjct: 138 ----LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSL 190

Query: 295 ISHLEYLDLSNNKFVT 310
           I  L + ++S N   T
Sbjct: 191 IPSLFHANVSYNLLST 206

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.5 bits (110), Expect = 8e-06
 Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 7/112 (6%)

Query: 89  SKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRH 148
           + +       L  L L       ++   +WL +   L  +DL    L K        ++ 
Sbjct: 224 NVVRGPVNVELTILKLQ----HNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 279

Query: 149 LFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGW--LSKLNELS 198
           L  + +S N+    +      + +LK +DLSHN             +L  L 
Sbjct: 280 LERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY 330

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.8 bits (168), Expect = 2e-13
 Identities = 43/248 (17%), Positives = 74/248 (29%), Gaps = 22/248 (8%)

Query: 74  YLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQV 133
            L    A      +   L V  +S LQ L L  ++           ++   L  ++L  V
Sbjct: 72  RLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV 131

Query: 134 HLGKA----SDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQF------ 183
                    ++   +    L  + ++           +    +L  +DLS N        
Sbjct: 132 SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191

Query: 184 -NFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQV 242
            +   P     L  L+     + +       +         +L  +D S   L       
Sbjct: 192 ISALCPLKFPTLQVLALRNAGMET----PSGVCSALAAARVQLQGLDLSHNSLRD----A 243

Query: 243 LDIFSAYGTYALVSLILSHCQISAALGKL-SSLRNLDFSLNMLNGSIPLSLGQISHLEYL 301
               S      L SL LS   +      L + L  LD S N L+   P    ++  +  L
Sbjct: 244 AGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLD-RNPSPD-ELPQVGNL 301

Query: 302 DLSNNKFV 309
            L  N F+
Sbjct: 302 SLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 37/228 (16%), Positives = 64/228 (28%), Gaps = 15/228 (6%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCW---IYSLRHLF 150
           G   +L+YL     D    +   + +   L L+ + +    +          +  +  L 
Sbjct: 40  GGGRSLEYLLKRV-DTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 151 FIVLSYNQFQGKIPSTLGNLT--SLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCM 208
            + L   +  G  P  L   T   L  ++L +  +             L   L  L    
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158

Query: 209 VRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQ----- 263
                           L+++D S      +   +  +        L  L L +       
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP-TLQVLALRNAGMETPS 217

Query: 264 --ISAALGKLSSLRNLDFSLNMLNGSIPLSLGQI-SHLEYLDLSNNKF 308
              SA       L+ LD S N L  +         S L  L+LS    
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.8 bits (171), Expect = 2e-13
 Identities = 35/230 (15%), Positives = 75/230 (32%), Gaps = 14/230 (6%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIV 153
            NL+NLQ L +  +            + L  L  +++  + L       + S+R +  + 
Sbjct: 120 PNLTNLQTLRIGNV-ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178

Query: 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFN------FTSPGWLSKLNELSSFLLNLVSC 207
           L  ++    +      L+S++ ++L                   S + +L+     L   
Sbjct: 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238

Query: 208 MVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLI---LSHCQI 264
                  +    + L ++   D +   L        D+ S  G    V++    +    +
Sbjct: 239 SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL 298

Query: 265 ----SAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
               S     L  ++ +    + +          +  LE+LDLS N  V 
Sbjct: 299 FYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE 348

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.4 bits (157), Expect = 1e-11
 Identities = 31/231 (13%), Positives = 66/231 (28%), Gaps = 19/231 (8%)

Query: 94  GNLSNLQYLDLSW--IDCRLHVDSLSWLSSLLLLEHIDLGQV-HLGKASDCWIYSLRHLF 150
           G LS+L+YL+L                L++L   + + +G V    +        L  L 
Sbjct: 95  GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL---QTLRIGNVETFSEIRRIDFAGLTSLN 151

Query: 151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPG---WLSKLNELSSFLLNLVSC 207
            + +     +     +L ++  +  + L  ++  F        LS +  L     NL   
Sbjct: 152 ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211

Query: 208 MVR------FHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSH 261
                        +     R   LT   F+ +         L                + 
Sbjct: 212 QFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP 271

Query: 262 CQISAALG----KLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
            +          +  ++R L      L   +      +  ++ + + N+K 
Sbjct: 272 SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.0 bits (156), Expect = 1e-11
 Identities = 50/309 (16%), Positives = 102/309 (33%), Gaps = 39/309 (12%)

Query: 24  LLKLKRNLKDLSNCLASWNIGDGDCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDD 83
           + ++   +K L+   +       +    +  +   L+    +    N  G    S+++  
Sbjct: 218 VDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESD-- 275

Query: 84  DHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWI 143
              + S+L       ++ L +      L  D  +  S L  ++ I +    +      + 
Sbjct: 276 ---VVSELGKVETVTIRRLHIP--QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330

Query: 144 YSLRHLFFIVLSYNQFQGKIPST---LGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSF 200
             L+ L F+ LS N    +        G   SL+ + LS N         L  + +    
Sbjct: 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH--------LRSMQKTGEI 382

Query: 201 LLNLVSCMV------RFHQLIPTSFIRLCKLTSIDFSSVKLSQ------DISQVLDIFS- 247
           LL L +          FH  +P S     K+  ++ SS  +           +VLD+ + 
Sbjct: 383 LLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNN 441

Query: 248 -----AYGTYALVSLILSHCQISA--ALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEY 300
                +     L  L +S  ++           L  +  S N L         +++ L+ 
Sbjct: 442 NLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQK 501

Query: 301 LDLSNNKFV 309
           + L  N + 
Sbjct: 502 IWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 63.6 bits (155), Expect = 2e-11
 Identities = 41/232 (17%), Positives = 76/232 (32%), Gaps = 22/232 (9%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVL 154
            L+ L   + S  D    +  +  ++    +  + + Q +L          L  +  I +
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVT----IRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317

Query: 155 SYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSS-FLLNLVSCMVRFHQ 213
             ++      S   +L SL+ +DLS N          +      S   L L    +R  Q
Sbjct: 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377

Query: 214 LIPTSFIRLCKLTSIDFSSVKLSQDIS--------QVLDI-------FSAYGTYALVSLI 258
                 + L  LTS+D S                 + L++               L  L 
Sbjct: 378 KTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLD 437

Query: 259 LSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
           +S+  + +    L  L+ L  S N L  ++P        L  + +S N+  +
Sbjct: 438 VSNNNLDSFSLFLPRLQELYISRNKLK-TLP-DASLFPVLLVMKISRNQLKS 487

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 63.2 bits (154), Expect = 3e-11
 Identities = 35/188 (18%), Positives = 76/188 (40%), Gaps = 13/188 (6%)

Query: 125 LEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFN 184
           ++ +DL    +       + +  +L  ++L  ++          +L SL+ +DLS N  +
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87

Query: 185 FTSPGWLSKLNELSSFLLNLVSCMVRFHQL-IPTSFIRLCKLTSIDFSSVKLSQDISQVL 243
             S  W   L+ L    LNL+     +  L + + F  L  L ++   +V+   +I +  
Sbjct: 88  SLSSSWFGPLSSLKY--LNLMGN--PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR-- 141

Query: 244 DIFSAYGTYALVSLILSHCQISA----ALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLE 299
             F+  G  +L  L +    +      +L  +  + +L   L+     + +    +S + 
Sbjct: 142 IDFA--GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVR 199

Query: 300 YLDLSNNK 307
           YL+L +  
Sbjct: 200 YLELRDTN 207

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.5 bits (147), Expect = 2e-10
 Identities = 40/220 (18%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVL 154
             +NLQ L L     R++        SL  LEH+DL   HL   S  W   L  L ++ L
Sbjct: 48  ACANLQVLILKS--SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105

Query: 155 SYNQFQG-KIPSTLGNLTSLKQIDLSH-NQFNFTSPGWLSKLNELSSFLLNLVSCMVRFH 212
             N +Q   + S   NLT+L+ + + +   F+       + L  L+   +      +   
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA----LSLR 161

Query: 213 QLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA----AL 268
                S   +  +  +     + +  +    DI S     ++  L L    ++      L
Sbjct: 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS-----SVRYLELRDTNLARFQFSPL 216

Query: 269 GKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
                   +       +     S  ++  L    L  ++ 
Sbjct: 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 34/161 (21%), Positives = 53/161 (32%), Gaps = 18/161 (11%)

Query: 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQ 213
                F   IPS L    ++K +DLS N+  +   G L     L    L L S   R + 
Sbjct: 12  GRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQV--LILKSS--RINT 64

Query: 214 LIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS-----AAL 268
           +   +F  L  L  +D S   LS   S            +L  L L           +  
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG-----PLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 269 GKLSSLRNLDFSLNMLNGSIP-LSLGQISHLEYLDLSNNKF 308
             L++L+ L          I  +    ++ L  L++     
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 48/220 (21%), Positives = 76/220 (34%), Gaps = 28/220 (12%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIV 153
            N   L  L +S  +  L         +   L+++ L    L       I SL H     
Sbjct: 138 HNTPKLTTLSMS--NNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHAN--- 192

Query: 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQ 213
           +SYN       STL    +++++D SHN  N        +L  L     NL         
Sbjct: 193 VSYNLL-----STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD------- 240

Query: 214 LIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS---AALGK 270
                 +    L  +D S  +L +     +          L  L +S+ ++         
Sbjct: 241 --TAWLLNYPGLVEVDLSYNELEK-----IMYHPFVKMQRLERLYISNNRLVALNLYGQP 293

Query: 271 LSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
           + +L+ LD S N L   +  +  Q   LE L L +N  VT
Sbjct: 294 IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT 332

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.0 bits (151), Expect = 5e-11
 Identities = 36/230 (15%), Positives = 74/230 (32%), Gaps = 28/230 (12%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIV 153
            +   ++ L+L+  D ++        +    ++ + +G   +         ++  L  +V
Sbjct: 66  DSFRQVELLNLN--DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123

Query: 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKL----------NELSSF--- 200
           L  N           N   L  + +S+N                       N L+     
Sbjct: 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS 183

Query: 201 -LLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLIL 259
            + +L    V ++ L  ++      +  +D S   ++                 L  L L
Sbjct: 184 LIPSLFHANVSYNLL--STLAIPIAVEELDASHNSINV--------VRGPVNVELTILKL 233

Query: 260 SHCQIS--AALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNK 307
            H  ++  A L     L  +D S N L   +     ++  LE L +SNN+
Sbjct: 234 QHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 61.6 bits (150), Expect = 7e-11
 Identities = 33/216 (15%), Positives = 77/216 (35%), Gaps = 18/216 (8%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVL 154
            L+N + +     +  +     + L S   +E ++L  + + +           +  + +
Sbjct: 43  TLNNQKIVTFK--NSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYM 100

Query: 155 SYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQL 214
            +N  +   P    N+  L  + L  N  +    G      +L++  L++ +      ++
Sbjct: 101 GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT--LSMSNN--NLERI 156

Query: 215 IPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKLSSL 274
              +F     L ++  SS +L+     ++         +L    +S+  +S  L    ++
Sbjct: 157 EDDTFQATTSLQNLQLSSNRLTHVDLSLIP--------SLFHANVSYNLLS-TLAIPIAV 207

Query: 275 RNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
             LD S N +N    +       L  L L +N    
Sbjct: 208 EELDASHNSINV---VRGPVNVELTILKLQHNNLTD 240

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 59.3 bits (144), Expect = 4e-10
 Identities = 44/217 (20%), Positives = 75/217 (34%), Gaps = 31/217 (14%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVL 154
             ++LQ L LS    RL    LS + SL    H ++    L       +     +  +  
Sbjct: 163 ATTSLQNLQLS--SNRLTHVDLSLIPSL---FHANVSYNLLST-----LAIPIAVEELDA 212

Query: 155 SYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQL 214
           S+N     +         L  + L HN    T   WL     L    ++L        ++
Sbjct: 213 SHNSIN-VVRG--PVNVELTILKLQHNNL--TDTAWLLNYPGLVE--VDLSYN--ELEKI 263

Query: 215 IPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS---AALGKL 271
           +   F+++ +L  +  S+ +L   ++             L  L LSH  +        + 
Sbjct: 264 MYHPFVKMQRLERLYISNNRLV-ALNLYGQ-----PIPTLKVLDLSHNHLLHVERNQPQF 317

Query: 272 SSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
             L NL    N +     L L     L+ L LS+N +
Sbjct: 318 DRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.9 bits (143), Expect = 5e-10
 Identities = 31/196 (15%), Positives = 63/196 (32%), Gaps = 16/196 (8%)

Query: 119 LSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDL 178
           L    +   + +              +L +   +    +  +    + L +   ++ ++L
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 76

Query: 179 SHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQD 238
           +  Q         +  + +    L +         L P  F  +  LT +      LS  
Sbjct: 77  NDLQIEEIDTYAFAYAHTIQK--LYMGFN--AIRYLPPHVFQNVPLLTVLVLERNDLSS- 131

Query: 239 ISQVLDIFSAYGTYALVSLILSHCQISA----ALGKLSSLRNLDFSLNMLNGSIPLSLGQ 294
               L     + T  L +L +S+  +           +SL+NL  S N L     + L  
Sbjct: 132 ----LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSL 184

Query: 295 ISHLEYLDLSNNKFVT 310
           I  L + ++S N   T
Sbjct: 185 IPSLFHANVSYNLLST 200

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 68.2 bits (167), Expect = 4e-13
 Identities = 37/218 (16%), Positives = 79/218 (36%), Gaps = 16/218 (7%)

Query: 97  SNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSY 156
           +N + L+L   + ++ +  ++    L  LE + L + H+          L +L  + L  
Sbjct: 64  TNTRLLNLH--ENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121

Query: 157 NQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIP 216
           N+           L+ LK++ L +N          +++  L    L+L     R   +  
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR--LDLGELK-RLSYISE 178

Query: 217 TSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA----ALGKLS 272
            +F  L  L  ++ +   L +     +   +      L  L LS   +SA    +   L 
Sbjct: 179 GAFEGLSNLRYLNLAMCNLRE-----IPNLT--PLIKLDELDLSGNHLSAIRPGSFQGLM 231

Query: 273 SLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
            L+ L    + +      +   +  L  ++L++N    
Sbjct: 232 HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 58.2 bits (141), Expect = 8e-10
 Identities = 36/196 (18%), Positives = 65/196 (33%), Gaps = 18/196 (9%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVL 154
            L+NL  L+L   D RL          L  L+ + L    +          +  L  + L
Sbjct: 110 GLANLNTLELF--DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL 167

Query: 155 S-YNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQ 213
               +           L++L+ ++L+           L+ L +L    L+L         
Sbjct: 168 GELKRLSYISEGAFEGLSNLRYLNLAMCN--LREIPNLTPLIKLDE--LDLSGN--HLSA 221

Query: 214 LIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA----ALG 269
           + P SF  L  L  +     ++   I +  + F      +LV + L+H  ++        
Sbjct: 222 IRPGSFQGLMHLQKLWMIQSQIQV-IER--NAFD--NLQSLVEINLAHNNLTLLPHDLFT 276

Query: 270 KLSSLRNLDFSLNMLN 285
            L  L  +    N  N
Sbjct: 277 PLHHLERIHLHHNPWN 292

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 67.8 bits (166), Expect = 6e-13
 Identities = 36/218 (16%), Positives = 76/218 (34%), Gaps = 16/218 (7%)

Query: 97  SNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSY 156
           SN +YL+L   +  + +        L  LE + LG+  + +        L  L  + L  
Sbjct: 75  SNTRYLNLM--ENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132

Query: 157 NQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIP 216
           N            L+ L+++ L +N          +++  L    L+L     +   +  
Sbjct: 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR--LDLGELK-KLEYISE 189

Query: 217 TSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA----ALGKLS 272
            +F  L  L  ++     +       +   +      L  L +S          +   LS
Sbjct: 190 GAFEGLFNLKYLNLGMCNIKD-----MPNLT--PLVGLEELEMSGNHFPEIRPGSFHGLS 242

Query: 273 SLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
           SL+ L    + ++     +   ++ L  L+L++N   +
Sbjct: 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 41/196 (20%), Positives = 67/196 (34%), Gaps = 18/196 (9%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVL 154
            L++L  L+L   D  L V        L  L  + L    +          +  L  + L
Sbjct: 121 GLASLNTLELF--DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178

Query: 155 S-YNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQ 213
               + +         L +LK ++L            L+ L  L    L +      F +
Sbjct: 179 GELKKLEYISEGAFEGLFNLKYLNLGMCN--IKDMPNLTPLVGLEE--LEMSGN--HFPE 232

Query: 214 LIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA----ALG 269
           + P SF  L  L  +   + ++S  I +  + F   G  +LV L L+H  +S+       
Sbjct: 233 IRPGSFHGLSSLKKLWVMNSQVSL-IER--NAFD--GLASLVELNLAHNNLSSLPHDLFT 287

Query: 270 KLSSLRNLDFSLNMLN 285
            L  L  L    N  N
Sbjct: 288 PLRYLVELHLHHNPWN 303

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 67.2 bits (164), Expect = 1e-12
 Identities = 51/233 (21%), Positives = 77/233 (33%), Gaps = 34/233 (14%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVL 154
               L+ L++S    +L    +     LL L        HL          L  L+   +
Sbjct: 79  LPPELRTLEVS--GNQLTSLPVL-PPGLLELSIFSNPLTHL----PALPSGLCKLW---I 128

Query: 155 SYNQFQGKIPSTLGNLTSLKQIDLSHNQFNF--TSPGWLSKLN-------ELSSFLLNLV 205
             NQ    +P     L  L    +S NQ       P  L KL         L      L 
Sbjct: 129 FGNQLT-SLPVLPPGLQEL---SVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQ 184

Query: 206 SCMVRFHQL--IPTSFIRLCKLTSIDFSSVKLSQDIS--QVLDIFSAYGTY------ALV 255
              V  +QL  +PT    L KL + +     L    S  + L +     T        L 
Sbjct: 185 ELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELK 244

Query: 256 SLILSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
            L++S  ++++     S L +L    N L   +P SL  +S    ++L  N  
Sbjct: 245 ELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 61.8 bits (150), Expect = 7e-11
 Identities = 40/213 (18%), Positives = 65/213 (30%), Gaps = 38/213 (17%)

Query: 96  LSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLS 155
            +    L++   +  L        + +     + +   +L  +       LR L    +S
Sbjct: 39  NNGNAVLNVG--ESGLTTLPDCLPAHI---TTLVIPDNNL-TSLPALPPELRTLE---VS 89

Query: 156 YNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLI 215
            NQ    +P     L  L              P   S L +L  F   L S        +
Sbjct: 90  GNQLT-SLPVLPPGLLELSIFSNPLTHL----PALPSGLCKLWIFGNQLTS--------L 136

Query: 216 PTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKLSSLR 275
           P     L +L+  D     L    S+            L  L   + Q+++     S L+
Sbjct: 137 PVLPPGLQELSVSDNQLASLPALPSE------------LCKLWAYNNQLTSLPMLPSGLQ 184

Query: 276 NLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
            L  S N L  S+P    +   L  L   NN+ 
Sbjct: 185 ELSVSDNQLA-SLPTLPSE---LYKLWAYNNRL 213

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.1 bits (135), Expect = 6e-09
 Identities = 45/240 (18%), Positives = 77/240 (32%), Gaps = 45/240 (18%)

Query: 94  GNLSNLQYLDLSWID--------CRLHVDS--LSWLSSLLL-LEHIDLGQVHLGKASDCW 142
             L  L                 C+L +    L+ L  L   L+ + +    L       
Sbjct: 101 PGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPA-L 159

Query: 143 IYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNF--TSPGWLSKL------ 194
              L  L+      NQ    +P     L  L    +S NQ     T P  L KL      
Sbjct: 160 PSELCKLW---AYNNQLT-SLPMLPSGLQEL---SVSDNQLASLPTLPSELYKLWAYNNR 212

Query: 195 -NELSSFLLNLVSCMVRFHQL--IPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGT 251
              L +    L   +V  ++L  +P       +L  +  S  +L+  +  +         
Sbjct: 213 LTSLPALPSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTS-LPMLPS------- 261

Query: 252 YALVSLILSHCQIS---AALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
             L+SL +   Q++    +L  LSS   ++   N L+     +L +I+          +F
Sbjct: 262 -GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRF 320

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 64.3 bits (157), Expect = 6e-12
 Identities = 45/234 (19%), Positives = 86/234 (36%), Gaps = 32/234 (13%)

Query: 97  SNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSY 156
            +   LDL   + ++         +L  L  + L    + K S      L  L  + LS 
Sbjct: 52  PDTALLDLQ--NNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109

Query: 157 NQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIP 216
           NQ + ++P  +    +L+++ +  N+         + LN++    + L +  ++   +  
Sbjct: 110 NQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIV--VELGTNPLKSSGIEN 164

Query: 217 TSFIRLCKLTSIDFSSVKLSQ-----------------DISQV-LDIFSAYGTYALVSLI 258
            +F  + KL+ I  +   ++                   I++V        G   L  L 
Sbjct: 165 GAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLK--GLNNLAKLG 222

Query: 259 LSHCQISA----ALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
           LS   ISA    +L     LR L  + N L   +P  L    +++ + L NN  
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 58.1 bits (141), Expect = 7e-10
 Identities = 34/224 (15%), Positives = 67/224 (29%), Gaps = 28/224 (12%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVL 154
            L  L+ L LS    +L         +L   + + + +  + K        L  +  + L
Sbjct: 98  PLVKLERLYLS--KNQLKELPEKMPKTL---QELRVHENEITKVRKSVFNGLNQMIVVEL 152

Query: 155 SYNQFQGKI--PSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFH 212
             N  +           +  L  I ++         G    L EL   L        +  
Sbjct: 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL--HLDGN-----KIT 205

Query: 213 QLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS---AALG 269
           ++   S   L  L  +  S   +S      +D  S   T  L  L L++ ++      L 
Sbjct: 206 KVDAASLKGLNNLAKLGLSFNSISA-----VDNGSLANTPHLRELHLNNNKLVKVPGGLA 260

Query: 270 KLSSLRNLDFSLNMLNG------SIPLSLGQISHLEYLDLSNNK 307
               ++ +    N ++         P    + +    + L +N 
Sbjct: 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.8 bits (135), Expect = 4e-09
 Identities = 40/233 (17%), Positives = 74/233 (31%), Gaps = 29/233 (12%)

Query: 89  SKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKA--SDCWIYSL 146
            +L       LQ L +   +  +     S  + L  +  ++LG   L  +   +     +
Sbjct: 113 KELPEKMPKTLQELRVH--ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170

Query: 147 RHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVS 206
           + L +I ++       IP   G   SL ++ L  N+        L  LN L+   L L  
Sbjct: 171 KKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAK--LGLSF 225

Query: 207 CMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA 266
                  +   S      L  +  ++ KL + +   L          +  + L +  ISA
Sbjct: 226 N--SISAVDNGSLANTPHLRELHLNNNKLVK-VPGGL-----ADHKYIQVVYLHNNNISA 277

Query: 267 ----------ALGKLSSLRNLDFSLNMLNGSI--PLSLGQISHLEYLDLSNNK 307
                        K +S   +    N +      P +   +     + L N K
Sbjct: 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 47/218 (21%), Positives = 90/218 (41%), Gaps = 28/218 (12%)

Query: 93  VGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152
           + NL+ L  + ++  + ++    ++ L++L  L  + L    +       + +L +L  +
Sbjct: 86  LKNLTKLVDILMN--NNQIA--DITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRL 139

Query: 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFH 212
            LS N       S L  LTSL+Q+   +   +      L+ L       L++ S  V   
Sbjct: 140 ELSSNTISD--ISALSGLTSLQQLSFGNQVTDLKPLANLTTLER-----LDISSNKVS-- 190

Query: 213 QLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS--AALGK 270
               +   +L  L S+  ++ ++S       DI        L  L L+  Q+     L  
Sbjct: 191 --DISVLAKLTNLESLIATNNQIS-------DITPLGILTNLDELSLNGNQLKDIGTLAS 241

Query: 271 LSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
           L++L +LD + N ++   PLS   ++ L  L L  N+ 
Sbjct: 242 LTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQI 277

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 55/218 (25%), Positives = 90/218 (41%), Gaps = 28/218 (12%)

Query: 93  VGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152
           V  L+NL  ++ S       +  ++ L +L  L  I +    +   +   + +L +L  +
Sbjct: 64  VEYLNNLTQINFS----NNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117

Query: 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFH 212
            L  NQ        L NLT+L +++LS N    +    LS L  L               
Sbjct: 118 TLFNNQITD--IDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQLSFG-------NQ 166

Query: 213 QLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS--AALGK 270
                    L  L  +D SS K+S      + + +      L SLI ++ QIS    LG 
Sbjct: 167 VTDLKPLANLTTLERLDISSNKVSD-----ISVLA--KLTNLESLIATNNQISDITPLGI 219

Query: 271 LSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
           L++L  L  + N L   I  +L  +++L  LDL+NN+ 
Sbjct: 220 LTNLDELSLNGNQLK-DIG-TLASLTNLTDLDLANNQI 255

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.4 bits (142), Expect = 9e-10
 Identities = 52/223 (23%), Positives = 82/223 (36%), Gaps = 25/223 (11%)

Query: 93  VGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152
           +G L+NL  L L+    +L    +  L+SL  L  +DL    +   +   +  L  L  +
Sbjct: 217 LGILTNLDELSLN--GNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 270

Query: 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFH 212
            L  NQ     P  L  LT+L  ++L+ NQ    SP  +S L  L+   L L        
Sbjct: 271 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTY--LTLYFN--NIS 322

Query: 213 QLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS--AALGK 270
            + P S   L KL  + F + K+S       D+ S      +  L   H QIS    L  
Sbjct: 323 DISPVSS--LTKLQRLFFYNNKVS-------DVSSLANLTNINWLSAGHNQISDLTPLAN 373

Query: 271 LSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTKKK 313
           L+ +  L  +      +       +S    +       +    
Sbjct: 374 LTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPAT 416

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.4 bits (134), Expect = 9e-09
 Identities = 45/199 (22%), Positives = 80/199 (40%), Gaps = 26/199 (13%)

Query: 113 VDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTS 172
           ++ +   ++L       LG+ ++          L  +  +         K    +  L +
Sbjct: 14  INQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNN 69

Query: 173 LKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLI-PTSFIRLCKLTSIDFS 231
           L QI+ S+NQ        L+ +  L + L  LV  ++  +Q+   T    L  LT +   
Sbjct: 70  LTQINFSNNQ--------LTDITPLKN-LTKLVDILMNNNQIADITPLANLTNLTGLTLF 120

Query: 232 SVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS--AALGKLSSLRNLDFSLNMLNGSIP 289
           + +++       DI        L  L LS   IS  +AL  L+SL+ L F   + +    
Sbjct: 121 NNQIT-------DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTD---L 170

Query: 290 LSLGQISHLEYLDLSNNKF 308
             L  ++ LE LD+S+NK 
Sbjct: 171 KPLANLTTLERLDISSNKV 189

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 43/216 (19%), Positives = 88/216 (40%), Gaps = 25/216 (11%)

Query: 93  VGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152
           + +L+NL  LDL+  + ++   +L+ LS L  L  + LG   +   S   +  L  L  +
Sbjct: 239 LASLTNLTDLDLA--NNQI--SNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNL 292

Query: 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFH 212
            L+ NQ +   P  + NL +L  + L  N  +  SP  +S L +L    L   +  V   
Sbjct: 293 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR--LFFYNNKVS-- 344

Query: 213 QLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA-ALGKL 271
               +S   L  +  +     ++S D++ + ++        +  L L+    +   +   
Sbjct: 345 --DVSSLANLTNINWLSAGHNQIS-DLTPLANLTR------ITQLGLNDQAWTNAPVNYK 395

Query: 272 SSLRNLDFSLNMLNGSI-PLSLGQISHLEYLDLSNN 306
           +++   +   N+    I P ++         D++ N
Sbjct: 396 ANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWN 431

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 38/216 (17%), Positives = 79/216 (36%), Gaps = 20/216 (9%)

Query: 93  VGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152
           +  L+ L  L L     ++   ++S L+ L  L +++L +  L   S   I +L++L ++
Sbjct: 261 LSGLTKLTELKLG--ANQI--SNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYL 314

Query: 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFH 212
            L +N      P  + +LT L+++   +N+   +    L+ L  ++   L+      +  
Sbjct: 315 TLYFNNISDISP--VSSLTKLQRLFFYNNKV--SDVSSLANLTNINW--LSAGHN--QIS 366

Query: 213 QLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKLS 272
            L P     L ++T +  +    +          S   T   V+  L      A +    
Sbjct: 367 DLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI---APATISDGG 421

Query: 273 SLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
           S    D + N+ +          S    +      F
Sbjct: 422 SYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTF 456

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 42/223 (18%), Positives = 81/223 (36%), Gaps = 16/223 (7%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDC-WIYSLRHLFFIV 153
           +L +L++LDLS     L   S SW   L  L  ++L         +      L  L  + 
Sbjct: 98  SLGSLEHLDLS--YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 155

Query: 154 LSYNQFQGKIPS-TLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFH 212
           +       KI       LT L+++++  +      P  L  +  +S   L L     +  
Sbjct: 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH--LILHMK--QHI 211

Query: 213 QLIPTSFIRLCKLTSIDFSSVKLSQDISQVL---DIFSAYGTYALVSLILSHCQISA--- 266
            L+         +  ++     L       L   +  S    +   ++ ++   +     
Sbjct: 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271

Query: 267 ALGKLSSLRNLDFSLNMLNGSIPLS-LGQISHLEYLDLSNNKF 308
            L ++S L  L+FS N L  S+P     +++ L+ + L  N +
Sbjct: 272 LLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 43/227 (18%), Positives = 76/227 (33%), Gaps = 23/227 (10%)

Query: 97  SNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSY 156
             ++ LDLS  + R+   S S L   + L+ + L    +    +    SL  L  + LSY
Sbjct: 52  EAVKSLDLS--NNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109

Query: 157 NQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSP-GWLSKLNELSSFLLNLVSCMVRFHQLI 215
           N       S    L+SL  ++L  N +         S L +L    +     M  F ++ 
Sbjct: 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV---GNMDTFTKIQ 166

Query: 216 PTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA----ALGKL 271
              F  L  L  ++  +  L     + L          +  LIL   Q        +   
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSLK-----SIQNVSHLILHMKQHILLLEIFVDVT 221

Query: 272 SSLRNLDFSLNMLNG----SIP----LSLGQISHLEYLDLSNNKFVT 310
           SS+  L+     L+      +      SL +      + +++     
Sbjct: 222 SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.2 bits (149), Expect = 9e-11
 Identities = 43/225 (19%), Positives = 67/225 (29%), Gaps = 31/225 (13%)

Query: 94  GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIV 153
               +L+++     + +L    L  L +L  L  I      L K       SL  +   V
Sbjct: 170 DLPPSLEFIAAG--NNQLE--ELPELQNLPFLTAIYADNNSL-KKLPDLPLSLESI---V 221

Query: 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQ 213
              N    +    L NL  L  I   +N    T P     L  L+     L         
Sbjct: 222 AGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTD------- 271

Query: 214 LIPTSFIRLCKLTSIDFSSVKLSQDIS--QVLDIFSAYGTY------ALVSLILSHCQIS 265
            +P     L  L   +     LS+       L+  S           +L  L +S+ ++ 
Sbjct: 272 -LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI 330

Query: 266 AALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
                   L  L  S N L   +P       +L+ L +  N    
Sbjct: 331 ELPALPPRLERLIASFNHLA-EVPELPQ---NLKQLHVEYNPLRE 371

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 37/242 (15%), Positives = 65/242 (26%), Gaps = 44/242 (18%)

Query: 93  VGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152
             N+ +      +W          S         + +  ++ + +  DC       L   
Sbjct: 30  AENVKSKTEYYNAW----------SEWERNAPPGNGEQREMAVSRLRDCLDRQAHELE-- 77

Query: 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNF--TSPGWLSKL-------NELSSFLLN 203
            L+       +P    +L SL     S N        P  L  L         LS     
Sbjct: 78  -LNNLGLS-SLPELPPHLESL---VASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPL 132

Query: 204 LVSCMVRFHQL--IPTSFIRLCKLTSIDFSSVKLSQDIS-----QVLDIFSAYGTY---- 252
           L    V  +QL  +P        L  ID  +  L +        + +   +         
Sbjct: 133 LEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPEL 191

Query: 253 ----ALVSLILSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
                L ++   +  +        SL ++    N+L       L  +  L  +   NN  
Sbjct: 192 QNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLL 249

Query: 309 VT 310
            T
Sbjct: 250 KT 251

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 45/218 (20%), Positives = 79/218 (36%), Gaps = 39/218 (17%)

Query: 93  VGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152
           + N S L+ +D+   +  L             LE I  G   L +  +  + +L  L  I
Sbjct: 149 LQNSSFLKIIDVD--NNSLK----KLPDLPPSLEFIAAGNNQLEELPE--LQNLPFLTAI 200

Query: 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFH 212
               N  + K+P    +L S+      +N         L +L EL + L  L +     +
Sbjct: 201 YADNNSLK-KLPDLPLSLESI---VAGNNI--------LEELPELQN-LPFLTTIYADNN 247

Query: 213 QL--IPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGK 270
            L  +P        L +++     L+  + ++          +L  L +S    S     
Sbjct: 248 LLKTLPDL---PPSLEALNVRDNYLTD-LPELPQ--------SLTFLDVSENIFSGLSEL 295

Query: 271 LSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
             +L  L+ S N +  S+         LE L++SNNK 
Sbjct: 296 PPNLYYLNASSNEIR-SLC---DLPPSLEELNVSNNKL 329

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 35/215 (16%), Positives = 68/215 (31%), Gaps = 42/215 (19%)

Query: 96  LSNLQYLDLSWIDCRLHVDSLSWLSSLLL-LEHIDLGQVHLGKASDCWIYSLRHLFFIVL 154
             +L +LD+S           S LS L   L +++     +    D    SL  L    +
Sbjct: 276 PQSLTFLDVSEN-------IFSGLSELPPNLYYLNASSNEIRSLCDLPP-SLEELN---V 324

Query: 155 SYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQL 214
           S N+   ++P+    L  L     S N            L E+     NL    V ++ L
Sbjct: 325 SNNKLI-ELPALPPRLERL---IASFNH-----------LAEVPELPQNLKQLHVEYNPL 369

Query: 215 --IPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKLS 272
              P     +  L        +++  +++V ++        L  L +    +        
Sbjct: 370 REFPDIPESVEDL--------RMNSHLAEVPELPQN-----LKQLHVETNPLREFPDIPE 416

Query: 273 SLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNK 307
           S+ +L  +   +      +      LE     ++ 
Sbjct: 417 SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 29/185 (15%), Positives = 61/185 (32%), Gaps = 49/185 (26%)

Query: 145 SLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNL 204
           S   L   +   +    ++P    N+ S  +   + +++   +P    +  E++  +  L
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA--VSRL 65

Query: 205 VSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLS---QDISQVLDIFSAYGTYALVSLILSH 261
             C+ R             +   ++ +++ LS   +                L SL+ S 
Sbjct: 66  RDCLDR-------------QAHELELNNLGLSSLPELPPH------------LESLVASC 100

Query: 262 CQIS---AALGKLSSLRNLDFSLNMLNGSIPL---------------SLGQISHLEYLDL 303
             ++        L SL   + +L  L+   PL                L   S L+ +D+
Sbjct: 101 NSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDV 160

Query: 304 SNNKF 308
            NN  
Sbjct: 161 DNNSL 165

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.9 bits (147), Expect = 2e-10
 Identities = 46/219 (21%), Positives = 83/219 (37%), Gaps = 27/219 (12%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVL 154
             +     +L        V      + L  ++ I      +       I  L ++  + L
Sbjct: 19  AFAETIKDNLKKKS----VTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFL 72

Query: 155 SYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQL 214
           + N+    I   L NL +L  + L  N+    S   L  L +L S  L+L    +     
Sbjct: 73  NGNKLT-DI-KPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKS--LSLEHNGIS---- 122

Query: 215 IPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS--AALGKLS 272
                + L +L S+   + K++       DI        L +L L   QIS    L  L+
Sbjct: 123 DINGLVHLPQLESLYLGNNKIT-------DITVLSRLTKLDTLSLEDNQISDIVPLAGLT 175

Query: 273 SLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTK 311
            L+NL  S N ++  +  +L  + +L+ L+L + + + K
Sbjct: 176 KLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQECLNK 212

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.2 bits (101), Expect = 7e-05
 Identities = 41/220 (18%), Positives = 67/220 (30%), Gaps = 69/220 (31%)

Query: 93  VGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152
           + NL NL +L L        +  LS L  L  L+ +                        
Sbjct: 83  LTNLKNLGWLFLD----ENKIKDLSSLKDLKKLKSLS----------------------- 115

Query: 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFH 212
            L +N     I + L +L  L+ + L +N+        ++ +  LS              
Sbjct: 116 -LEHNGIS-DI-NGLVHLPQLESLYLGNNK--------ITDITVLSR------------- 151

Query: 213 QLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS--AALGK 270
                    L KL ++     ++S       DI    G   L +L LS   IS   AL  
Sbjct: 152 ---------LTKLDTLSLEDNQIS-------DIVPLAGLTKLQNLYLSKNHISDLRALAG 195

Query: 271 LSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
           L +L  L+                +     +  ++   VT
Sbjct: 196 LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 235

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 25/158 (15%), Positives = 52/158 (32%), Gaps = 8/158 (5%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVL 154
           +L  L+ L L   + ++    ++ LS L  L+ + L    +       +  L  L  + L
Sbjct: 129 HLPQLESLYLG--NNKIT--DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 182

Query: 155 SYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQL 214
           S N         L  L +L  ++L   +         S L   ++      S +      
Sbjct: 183 SKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 240

Query: 215 IPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTY 252
               + +      +   + ++S    Q + I  A   +
Sbjct: 241 DDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARF 278

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.1 bits (141), Expect = 6e-10
 Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 15/167 (8%)

Query: 145 SLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNL 204
           + + +F   L  N+      ++     +L  + L  N          + L  L    L+ 
Sbjct: 33  ASQRIF---LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 205 VSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQI 264
            +   +   + P +F  L +L ++      L Q++     +F   G  AL  L L    +
Sbjct: 90  NA---QLRSVDPATFHGLGRLHTLHLDRCGL-QELGP--GLFR--GLAALQYLYLQDNAL 141

Query: 265 SA----ALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNK 307
            A        L +L +L    N ++     +   +  L+ L L  N+
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 44/216 (20%), Positives = 73/216 (33%), Gaps = 18/216 (8%)

Query: 97  SNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSY 156
           +  Q + L     R+     +   +   L  + L    L +        L  L  + LS 
Sbjct: 32  AASQRIFLH--GNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 157 NQFQGKIPS-TLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLI 215
           N     +   T   L  L  + L         PG    L  L    L L         L 
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY--LYLQDN--ALQALP 145

Query: 216 PTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA----ALGKL 271
             +F  L  LT +     ++   + +    F   G ++L  L+L   +++     A   L
Sbjct: 146 DDTFRDLGNLTHLFLHGNRI-SSVPE--RAFR--GLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 272 SSLRNLDFSLNMLNGSIPLS-LGQISHLEYLDLSNN 306
             L  L    N L+ ++P   L  +  L+YL L++N
Sbjct: 201 GRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 28/138 (20%), Positives = 43/138 (31%), Gaps = 6/138 (4%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVL 154
            L  L  L L    C L          L  L+++ L    L    D     L +L  + L
Sbjct: 103 GLGRLHTLHLD--RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160

Query: 155 SYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQL 214
             N+           L SL ++ L  N+     P     L  L +  L L +  +    L
Sbjct: 161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT--LYLFANNLSA--L 216

Query: 215 IPTSFIRLCKLTSIDFSS 232
              +   L  L  +  + 
Sbjct: 217 PTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.9 bits (125), Expect = 7e-08
 Identities = 43/168 (25%), Positives = 59/168 (35%), Gaps = 14/168 (8%)

Query: 145 SLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHN-QFNFTSPGWLSKLNELSSFLLN 203
           + R+L  + L  N       +    L  L+Q+DLS N Q     P     L  L +  L+
Sbjct: 54  ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT--LH 111

Query: 204 LVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQ 263
           L  C     +L P  F  L  L  +      L Q +    D F       L  L L   +
Sbjct: 112 LDRC--GLQELGPGLFRGLAALQYLYLQDNAL-QALPD--DTFR--DLGNLTHLFLHGNR 164

Query: 264 ISA----ALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNK 307
           IS+    A   L SL  L    N +    P +   +  L  L L  N 
Sbjct: 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 7/143 (4%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVL 154
            L+ L+ LDLS  + +L     +    L  L  + L +  L +        L  L ++ L
Sbjct: 78  GLALLEQLDLSD-NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL 136

Query: 155 SYNQFQGKIPS-TLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQ 213
             N  Q  +P  T  +L +L  + L  N+ +         L+ L    L L     R   
Sbjct: 137 QDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR--LLLHQN--RVAH 191

Query: 214 LIPTSFIRLCKLTSIDFSSVKLS 236
           + P +F  L +L ++   +  LS
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLS 214

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 58.8 bits (142), Expect = 7e-10
 Identities = 34/225 (15%), Positives = 72/225 (32%), Gaps = 48/225 (21%)

Query: 96  LSNLQYLDLSWIDCRLHVDSLSWLSSLLL--LEHIDLGQVHLGKASDCWIYSLRHLFFIV 153
           ++    L L+ +       +LS L   L   +  +++ Q  L    +    SL +L    
Sbjct: 58  INQFSELQLNRL-------NLSSLPDNLPPQITVLEITQNALISLPE-LPASLEYL---D 106

Query: 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQ 213
              N+    +P    +L  L   D+ +NQ           L  L      L       +Q
Sbjct: 107 ACDNRLS-TLPELPASLKHL---DVDNNQ-----------LTMLPELPALLEYINADNNQ 151

Query: 214 L--IPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS---AAL 268
           L  +P        L  +   + +L+  + ++ +        +L +L +S   +    A  
Sbjct: 152 LTMLPEL---PTSLEVLSVRNNQLTF-LPELPE--------SLEALDVSTNLLESLPAVP 199

Query: 269 GKLSSLRNLDFSLNMLN---GSIPLSLGQISHLEYLDLSNNKFVT 310
            +       +            IP ++  +     + L +N   +
Sbjct: 200 VRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 35/232 (15%), Positives = 61/232 (26%), Gaps = 28/232 (12%)

Query: 96  LSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHL----FF 151
            ++L+ L +   + +L             LE +D+    L            H      F
Sbjct: 159 PTSLEVLSVR--NNQLT----FLPELPESLEALDVSTNLLESLPA-VPVRNHHSEETEIF 211

Query: 152 IVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRF 211
                N+    IP  + +L     I L  N  +      LS+         +        
Sbjct: 212 FRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQP--DYHGPRIYFSM 268

Query: 212 HQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSA--------------YGTYALVSL 257
                 +  R        +       D+SQ+   F                  T +  + 
Sbjct: 269 SDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNT 328

Query: 258 ILSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFV 309
                Q++A L KLS+   L      +      S      L + +L     V
Sbjct: 329 SGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLV 380

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 58.1 bits (141), Expect = 7e-10
 Identities = 49/234 (20%), Positives = 80/234 (34%), Gaps = 33/234 (14%)

Query: 97  SNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSY 156
            +   LDL   +  +          L  L  + L    + K  +     LR L  + +S 
Sbjct: 54  PDTTLLDLQ--NNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111

Query: 157 NQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIP 216
           N    +IP  L   +SL ++ +  N+      G  S L  ++   + +    +      P
Sbjct: 112 NHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNC--IEMGGNPLENSGFEP 166

Query: 217 TSFIRLCKLTSIDFSSVKLSQ-----------------DISQV-LDIFSAYGTYALVSLI 258
            +F  L KL  +  S  KL+                   I  + L+         L  L 
Sbjct: 167 GAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLL--RYSKLYRLG 223

Query: 259 LSHCQISA----ALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
           L H QI      +L  L +LR L    N L+  +P  L  +  L+ + L  N  
Sbjct: 224 LGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 37/227 (16%), Positives = 74/227 (32%), Gaps = 32/227 (14%)

Query: 96  LSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKAS-DCWIYSLRHLFFIVL 154
            S+L  L +   D R+        S L  +  I++G   L  +  +   +    L ++ +
Sbjct: 122 PSSLVELRIH--DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRI 179

Query: 155 SYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLL--NLVSCMVRFH 212
           S  +    IP  L    +L ++ L HN+        L + ++L    L  N +       
Sbjct: 180 SEAKLT-GIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM----- 231

Query: 213 QLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA------ 266
            +   S   L  L  +   + KLS+ +   L          L  + L    I+       
Sbjct: 232 -IENGSLSFLPTLRELHLDNNKLSR-VPAGL-----PDLKLLQVVYLHTNNITKVGVNDF 284

Query: 267 ----ALGKLSSLRNLDFSLNML-NGSIPLSLGQ-ISHLEYLDLSNNK 307
                  K +    +    N +    +  +  + ++    +   N K
Sbjct: 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.9 bits (117), Expect = 9e-07
 Identities = 24/147 (16%), Positives = 50/147 (34%), Gaps = 7/147 (4%)

Query: 89  SKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRH 148
           + +       L  L L     ++    L  L     L  + LG   +    +  +  L  
Sbjct: 185 TGIPKDLPETLNELHLD--HNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT 242

Query: 149 LFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFL----LNL 204
           L  + L  N+   ++P+ L +L  L+ + L  N            +           ++L
Sbjct: 243 LRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL 301

Query: 205 VSCMVRFHQLIPTSFIRLCKLTSIDFS 231
            +  V + ++ P +F  +    +I F 
Sbjct: 302 FNNPVPYWEVQPATFRCVTDRLAIQFG 328

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 41/217 (18%), Positives = 84/217 (38%), Gaps = 27/217 (12%)

Query: 93  VGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152
             +L  +  L        +   ++  +  L  L  ++L    +   +   + +L  +  +
Sbjct: 37  QADLDGITTLSAF--GTGVT--TIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITEL 90

Query: 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFH 212
            LS N    K  S +  L S+K +DL+  Q    +P  L+ L+ L    L L    +   
Sbjct: 91  ELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQV--LYLDLNQIT-- 142

Query: 213 QLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS--AALGK 270
               +    L  L  +   + ++S D++ + ++        L +L     +IS  + L  
Sbjct: 143 --NISPLAGLTNLQYLSIGNAQVS-DLTPLANLSK------LTTLKADDNKISDISPLAS 193

Query: 271 LSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNK 307
           L +L  +    N ++   PL+    S+L  + L+N  
Sbjct: 194 LPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLTNQT 228

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.0 bits (125), Expect = 7e-08
 Identities = 36/191 (18%), Positives = 71/191 (37%), Gaps = 23/191 (12%)

Query: 119 LSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDL 178
             +L     I  G+ ++          L  +  +              +  L +L  ++L
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGV--TTIEGVQYLNNLIGLEL 70

Query: 179 SHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQD 238
             NQ    +P  L  L +++   L L    ++      ++   L  + ++D +S      
Sbjct: 71  KDNQITDLAP--LKNLTKITE--LELSGNPLK----NVSAIAGLQSIKTLDLTS------ 116

Query: 239 ISQVLDIFSAYGTYALVSLILSHCQIS--AALGKLSSLRNLDFSLNMLNGSIPLSLGQIS 296
            +Q+ D+    G   L  L L   QI+  + L  L++L+ L      ++   PL+   +S
Sbjct: 117 -TQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLA--NLS 173

Query: 297 HLEYLDLSNNK 307
            L  L   +NK
Sbjct: 174 KLTTLKADDNK 184

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 23/147 (15%), Positives = 56/147 (38%), Gaps = 23/147 (15%)

Query: 165 STLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLL--NLVSCMVRFHQLIPTSFIRL 222
                L +  +I    +    T     + L+ +++       V+ +     L        
Sbjct: 13  FPDPALANAIKIAAGKSN--VTDTVTQADLDGITTLSAFGTGVTTIEGVQYLN------- 63

Query: 223 CKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS--AALGKLSSLRNLDFS 280
             L  ++    +++ D++ + ++        +  L LS   +   +A+  L S++ LD +
Sbjct: 64  -NLIGLELKDNQIT-DLAPLKNLTK------ITELELSGNPLKNVSAIAGLQSIKTLDLT 115

Query: 281 LNMLNGSIPLSLGQISHLEYLDLSNNK 307
              +    PL+   +S+L+ L L  N+
Sbjct: 116 STQITDVTPLA--GLSNLQVLYLDLNQ 140

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.9 bits (134), Expect = 5e-09
 Identities = 42/270 (15%), Positives = 83/270 (30%), Gaps = 22/270 (8%)

Query: 52  VGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRL 111
           +G    +     + ++ E     + +S        M + L++ + + L     +      
Sbjct: 236 LGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNR 295

Query: 112 HVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLT 171
              S  WL  L      D     L + +   I++        +                 
Sbjct: 296 P--SHVWLCDLPAASLND----QLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDE 349

Query: 172 SLKQIDLSHNQFNFTSPGWLSKLNELSS-------FLLNLVSCM--VRFHQLIPTSFIRL 222
            L + +LS  +        L    EL          LL ++  M  +        +    
Sbjct: 350 QLFRCELSVEKSTVL-QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF 408

Query: 223 CKLTSIDFSSVKLSQDISQVL---DIFSAYGTYALVSLILSHCQIS--AALGKLSSLRNL 277
             L ++D        D+       +         +  L L+H  ++    L +L  + +L
Sbjct: 409 STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHL 468

Query: 278 DFSLNMLNGSIPLSLGQISHLEYLDLSNNK 307
           D S N L  ++P +L  +  LE L  S+N 
Sbjct: 469 DLSHNRLR-ALPPALAALRCLEVLQASDNA 497

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.9 bits (108), Expect = 1e-05
 Identities = 42/298 (14%), Positives = 83/298 (27%), Gaps = 30/298 (10%)

Query: 13  YVGCKESERGALLKLKRNLKDLSNCLASWNIGDGDCCKWVGNFCNNLTGHILELNLENPF 72
           +V  +E+           +      L           +W      N   H+   +L    
Sbjct: 249 HVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAA- 307

Query: 73  GYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQ 132
                    D       +++     + +   L            +    L   E + + +
Sbjct: 308 ------SLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCE-LSVEK 360

Query: 133 VHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLS 192
             + ++       L+ L             +   L  L   K+     +      P   +
Sbjct: 361 STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 420

Query: 193 KLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTY 252
            L++L S  L   S +   +  +    +    LT +     +L                 
Sbjct: 421 YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLE-QLLL--------------- 464

Query: 253 ALVSLILSHCQIS---AALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNK 307
            +  L LSH ++     AL  L  L  L  S N L  ++   +  +  L+ L L NN+
Sbjct: 465 -VTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNR 519

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 45/231 (19%), Positives = 76/231 (32%), Gaps = 25/231 (10%)

Query: 92  VVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFF 151
            + +LS L+ L +S    R+    +S       LE++DL    L K S     +L+HL  
Sbjct: 40  DILSLSKLRILIISH--NRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLD- 96

Query: 152 IVLSYNQFQG-KIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVR 210
             LS+N F    I    GN++ LK + LS      +S   ++ LN     L+   +    
Sbjct: 97  --LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGET---- 150

Query: 211 FHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGK 270
                      L    +     V  +      +   S      L    +           
Sbjct: 151 --YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208

Query: 271 LSS----------LRNLDFSLNMLNGSIPLSLGQI---SHLEYLDLSNNKF 308
             S          L NL  +      +  + + Q+   + + Y  +SN K 
Sbjct: 209 FLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL 259

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 43/241 (17%), Positives = 78/241 (32%), Gaps = 43/241 (17%)

Query: 74  YLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCR-LHVDSLSWLSSLLLLEHIDLGQ 132
            L       D        +    SN+   + +    R +H+   S +S      H+D   
Sbjct: 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF---LHLDFSN 333

Query: 133 VHLGKASDCWIYSLRHLFFIVLSYNQFQ--GKIPSTLGNLTSLKQIDLSHNQFNFTSPGW 190
             L          L  L  ++L  NQ +   KI      + SL+Q+D+S N  ++     
Sbjct: 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK-- 391

Query: 191 LSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYG 250
                                             L S++ SS  L+  I + L       
Sbjct: 392 -------------------------KGDCSWTKSLLSLNMSSNILTDTIFRCL------- 419

Query: 251 TYALVSLILSHCQISA---ALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNK 307
              +  L L   +I +    + KL +L+ L+ + N L         +++ L+ + L  N 
Sbjct: 420 PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479

Query: 308 F 308
           +
Sbjct: 480 W 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.7 bits (103), Expect = 6e-05
 Identities = 38/230 (16%), Positives = 72/230 (31%), Gaps = 16/230 (6%)

Query: 94  GNLSNLQYLDLS---------WIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIY 144
           GN+S L++L LS              L++  +  +      E  D   +         I 
Sbjct: 112 GNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171

Query: 145 SLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNL 204
              +  F  +     +      L N+  + + +      +  +   L    +LS+  LN 
Sbjct: 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSNLTLNN 229

Query: 205 VSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQI 264
           +         I    +    +     S+VKL   +      +S     AL    +     
Sbjct: 230 IETTWNSFIRILQ-LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF 288

Query: 265 ----SAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
               S      S++   +F+++       L   +IS   +LD SNN    
Sbjct: 289 GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTD 338

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.7 bits (129), Expect = 3e-08
 Identities = 53/226 (23%), Positives = 84/226 (37%), Gaps = 17/226 (7%)

Query: 92  VVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFF 151
            +  LS L+ L LS    R+             LE++D+    L   S C + SLRHL  
Sbjct: 71  DISFLSELRVLRLSH--NRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLD- 127

Query: 152 IVLSYNQFQG-KIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVR 210
             LS+N F    +    GNLT L  + LS  +F       ++ L+ LS  LL+LVS  + 
Sbjct: 128 --LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH-LSCILLDLVSYHI- 183

Query: 211 FHQLIPTSFIRLC-KLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQ----IS 265
                  S       +  + F    L      +      +   + + L   +CQ      
Sbjct: 184 -KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL 242

Query: 266 AALGKLSSLRNLDFSLNMLNGSIPLSLGQI---SHLEYLDLSNNKF 308
           + L +  +L N+            + L Q      +EYL++ N   
Sbjct: 243 SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI 288

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 42/264 (15%), Positives = 91/264 (34%), Gaps = 12/264 (4%)

Query: 50  KWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDC 109
           K     C  L   + EL        +     E                 ++YL++  +  
Sbjct: 229 KLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI 288

Query: 110 RLHVDSLSWLSSLLLLEHIDLGQVHLGK--ASDCWIYS-LRHLFFIVLSYNQFQGKIPST 166
              +D   +  S   L+ + +  V       S   +YS    +   +LS +         
Sbjct: 289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC 348

Query: 167 LGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLT 226
             + +S   ++ + N F  +     S L  L + +L          +      +    ++
Sbjct: 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL-----KNFFKVALMTKNMS 403

Query: 227 SIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAAL-GKL-SSLRNLDFSLNML 284
           S++   V L+   S   D        +++ L LS   ++ ++   L   ++ LD   N +
Sbjct: 404 SLETLDVSLNSLNSHAYDRT-CAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRI 462

Query: 285 NGSIPLSLGQISHLEYLDLSNNKF 308
             SIP  +  +  L+ L++++N+ 
Sbjct: 463 M-SIPKDVTHLQALQELNVASNQL 485

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.1 bits (123), Expect = 6e-08
 Identities = 32/219 (14%), Positives = 67/219 (30%), Gaps = 62/219 (28%)

Query: 89  SKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRH 148
           + +    +++L Y+ L+ I+    V  L+ +     ++ + +  +H    +   I  L +
Sbjct: 36  ANITEAQMNSLTYITLANIN----VTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSN 89

Query: 149 LFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCM 208
           L  + +            L  LTSL  +D+SH+  + +    ++ L              
Sbjct: 90  LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP------------- 136

Query: 209 VRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAAL 268
                          K+ SID S      DI                            L
Sbjct: 137 ---------------KVNSIDLSYNGAITDIM--------------------------PL 155

Query: 269 GKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNK 307
             L  L++L+   + ++    +       L  L   +  
Sbjct: 156 KTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 26/150 (17%), Positives = 48/150 (32%), Gaps = 41/150 (27%)

Query: 166 TLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKL 225
           T   + SL  I L++      +   +   + +    L + +                   
Sbjct: 39  TEAQMNSLTYITLANINVTDLTG--IEYAHNIKD--LTINNI----------------HA 78

Query: 226 TSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS----AALGKLSSLRNLDFSL 281
           T+ +  S  LS                 L  L +    ++      L  L+SL  LD S 
Sbjct: 79  TNYNPIS-GLSN----------------LERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121

Query: 282 NMLNGSIPLSLGQISHLEYLDLSNNKFVTK 311
           +  + SI   +  +  +  +DLS N  +T 
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYNGAITD 151

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 47/223 (21%), Positives = 84/223 (37%), Gaps = 31/223 (13%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVL 154
             +     +L        V      + L  ++ I      +       I  L ++  + L
Sbjct: 22  AFAETIKDNLKKK----SVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFL 75

Query: 155 SYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLL--NLVSCMVRFH 212
           + N+    I   L NL +L  + L  N+    S   L  L +L S  L  N +S +    
Sbjct: 76  NGNKLT-DI-KPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDI---- 127

Query: 213 QLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS--AALGK 270
                  + L +L S+   + K++       DI        L +L L   QIS    L  
Sbjct: 128 ----NGLVHLPQLESLYLGNNKIT-------DITVLSRLTKLDTLSLEDNQISDIVPLAG 176

Query: 271 LSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTKKK 313
           L+ L+NL  S N ++  +  +L  + +L+ L+L + + + K  
Sbjct: 177 LTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQECLNKPI 217

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 44/236 (18%), Positives = 84/236 (35%), Gaps = 36/236 (15%)

Query: 89  SKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRH 148
           +KL V   + L  LD S    ++    +S    L     ++    ++ K     +     
Sbjct: 162 TKLDVTPQTQLTTLDCS--FNKITELDVSQNKLL---NRLNCDTNNITKLD---LNQNIQ 213

Query: 149 LFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELS---------- 198
           L F+  S N+   +I   +  LT L   D S N         LSKL  L           
Sbjct: 214 LTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEID 270

Query: 199 -SFLLNLVSCMVRFHQLIPTSFIRLC-KLTSIDFSSVKLSQ-DISQVLDIFSAYGTYALV 255
            +    L+       + I    +    +L  +D  +  +++ D+SQ            LV
Sbjct: 271 LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ---------NPKLV 321

Query: 256 SLILSHCQISA-ALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
            L L++ +++   +   + L++L      +      S+G+I  L     +  + +T
Sbjct: 322 YLYLNNTELTELDVSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTIT 375

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 41/236 (17%), Positives = 74/236 (31%), Gaps = 36/236 (15%)

Query: 89  SKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRH 148
           +KL V     L YL+ +     L    +S  + L  L+     ++         +     
Sbjct: 119 TKLDVSQNPLLTYLNCA--RNTLTEIDVSHNTQLTELDCHLNKKITKLD-----VTPQTQ 171

Query: 149 LFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQ---FNFTSPGWLSKL----NELSSF- 200
           L  +  S+N+        +     L +++   N     +      L+ L    N+L+   
Sbjct: 172 LTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID 228

Query: 201 ---LLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQ-DISQVLDIFSAYGTYALVS 256
              L  L       + L       L KLT++      L + D++             L+ 
Sbjct: 229 VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQ---------LIY 279

Query: 257 LILSHCQI--SAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
                C+      +   + L  LD     +     L L Q   L YL L+N +   
Sbjct: 280 FQAEGCRKIKELDVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELTE 332

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 40/209 (19%), Positives = 69/209 (33%), Gaps = 13/209 (6%)

Query: 104 LSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKI 163
                  +          L  L  +D     +   +   I  L  L  ++ + N     +
Sbjct: 23  EVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNIT-TL 79

Query: 164 PSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLC 223
              L   T+L  +    N+        L+KL  L+     L    V  + L+        
Sbjct: 80  D--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARN 137

Query: 224 KLTSIDFSS----VKLSQDISQVLDIFSAYGTYALVSLILSHCQISA-ALGKLSSLRNLD 278
            LT ID S      +L   +++ +          L +L  S  +I+   + +   L  L+
Sbjct: 138 TLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLN 197

Query: 279 FSLNMLNGSIPLSLGQISHLEYLDLSNNK 307
              N +     L L Q   L +LD S+NK
Sbjct: 198 CDTNNITK---LDLNQNIQLTFLDCSSNK 223

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 39/222 (17%), Positives = 68/222 (30%), Gaps = 55/222 (24%)

Query: 89  SKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRH 148
           + L +   +NL YL                      L ++D+               L  
Sbjct: 77  TTLDLSQNTNLTYLACDSNK----------------LTNLDVTP-------------LTK 107

Query: 149 LFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCM 208
           L ++    N+        +     L  ++ + N          ++L EL   L       
Sbjct: 108 LTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKK---- 160

Query: 209 VRFHQLIPTSFIRLCKLTSIDFSSVKLSQ-DISQVLDIFSAYGTYALVSLILSHCQISA- 266
                +         +LT++D S  K+++ D+SQ            L  L      I+  
Sbjct: 161 -----ITKLDVTPQTQLTTLDCSFNKITELDVSQN---------KLLNRLNCDTNNITKL 206

Query: 267 ALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
            L +   L  LD S N L     + +  ++ L Y D S N  
Sbjct: 207 DLNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPL 245

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 36/225 (16%), Positives = 62/225 (27%), Gaps = 57/225 (25%)

Query: 89  SKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSL--LLLEHIDLGQVHLGKASDCWIYSL 146
           + L V  L+ L YL+      +L    +S    L  L      L ++ +           
Sbjct: 98  TNLDVTPLTKLTYLNCD--TNKLTKLDVSQNPLLTYLNCARNTLTEIDVSH--------N 147

Query: 147 RHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVS 206
             L  +    N+        +   T L  +D S N+           LN L+        
Sbjct: 148 TQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLN-------- 197

Query: 207 CMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA 266
                             +T +D +                      L  L  S  +++ 
Sbjct: 198 -------------CDTNNITKLDLNQNI------------------QLTFLDCSSNKLTE 226

Query: 267 A-LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
             +  L+ L   D S+N L     L +  +S L  L       + 
Sbjct: 227 IDVTPLTQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTDLLE 268

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 32/172 (18%), Positives = 58/172 (33%), Gaps = 23/172 (13%)

Query: 152 IVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQF-NFTSPGWLSKLNELS-----------S 199
            V +  + Q     +   L +L  +D  ++   + T    L+ L +L            S
Sbjct: 23  EVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLS 82

Query: 200 FLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLIL 259
              NL       ++L       L KLT ++  + KL++                L  L  
Sbjct: 83  QNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTK--------LDVSQNPLLTYLNC 134

Query: 260 SHCQISA-ALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
           +   ++   +   + L  LD  LN     + ++    + L  LD S NK   
Sbjct: 135 ARNTLTEIDVSHNTQLTELDCHLNKKITKLDVT--PQTQLTTLDCSFNKITE 184

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 47/236 (19%), Positives = 83/236 (35%), Gaps = 25/236 (10%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLS--WLSSLLLLEHIDLGQVHLGK-ASDCWIYSLRHLFF 151
            L+NL+ L L+   C L    LS  +   L  LE + L   ++ K     +  ++R    
Sbjct: 101 GLANLEVLTLTQ--CNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV 158

Query: 152 IVLSYNQFQGKIPSTLGNLTS--LKQIDLSHNQFNFTSPGWLS--------KLNELSSFL 201
           + L++N+ +      L N        + LS       +  WL         K   +++  
Sbjct: 159 LDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLD 218

Query: 202 LN----LVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLD--IFSAYGTYALV 255
           L+      S   RF   I  + I+   L++             +  D   F       + 
Sbjct: 219 LSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVK 278

Query: 256 SLILSHCQISA----ALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNK 307
           +  LS  +I A         + L  L  + N +N     +   ++HL  L+LS N 
Sbjct: 279 TCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 45/232 (19%), Positives = 74/232 (31%), Gaps = 42/232 (18%)

Query: 95  NLSNLQYLDLSW--IDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152
           N+     LDL++  +   +  + L                             L  +   
Sbjct: 152 NMRRFHVLDLTFNKVKS-ICEEDLLNFQGKHFTL-----------------LRLSSITLQ 193

Query: 153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKL---NELSSFLLNLVSCMV 209
            ++      +        TS+  +DLS N F  +            ++ S +L+    M 
Sbjct: 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253

Query: 210 R------FHQLIPTSFIRLC--KLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSH 261
                  F      +F  L    + + D S  K+   +  V   F+      L  L L+ 
Sbjct: 254 SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT-----DLEQLTLAQ 308

Query: 262 CQISA----ALGKLSSLRNLDFSLNMLNGSIP-LSLGQISHLEYLDLSNNKF 308
            +I+     A   L+ L  L+ S N L GSI       +  LE LDLS N  
Sbjct: 309 NEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHI 359

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 46.3 bits (110), Expect = 6e-06
 Identities = 39/224 (17%), Positives = 76/224 (33%), Gaps = 36/224 (16%)

Query: 95  NLSNLQYLDLSWIDCR-LHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIV 153
             +++  LDLS    +           +   ++ + L   +   +S              
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS-------------- 255

Query: 154 LSYNQFQGKIPSTLGNL--TSLKQIDLSHNQFNFTSPGWLSKLNELSSFLL--NLVSCMV 209
             +  F+     T   L  + +K  DLS ++         S   +L    L  N      
Sbjct: 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN------ 309

Query: 210 RFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA--- 266
             +++   +F  L  L  ++ S   L    S++ +         L  L LS+  I A   
Sbjct: 310 EINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE-----NLDKLEVLDLSYNHIRALGD 364

Query: 267 -ALGKLSSLRNLDFSLNMLNGSIPLS-LGQISHLEYLDLSNNKF 308
            +   L +L+ L    N L  S+P     +++ L+ + L  N +
Sbjct: 365 QSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 46.3 bits (110), Expect = 7e-06
 Identities = 44/267 (16%), Positives = 83/267 (31%), Gaps = 60/267 (22%)

Query: 95  NLSNLQYLDLSW--IDCRLHVDSLSWLSSL--LLLEHIDLGQVHLGKASDCWIYSLRHLF 150
            L +LQ+L +        +  ++   LSSL  L L++    Q+  G  +     +L  L 
Sbjct: 52  RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL--ANLEVLT 109

Query: 151 FIVLSYNQFQGKI--PSTLGNLTSLKQIDLSHNQFNFTSPG------------WLS---- 192
              L+     G +   +    LTSL+ + L  N      P              L+    
Sbjct: 110 ---LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166

Query: 193 --------------KLNELSSFLLNLVSC-MVRFHQLIPTSFIRLCKLTSIDFSSVKLSQ 237
                             L    + L              +  +   +T++D S     +
Sbjct: 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE 226

Query: 238 DISQVLDIFSAYGTYALVSLILSHCQISAAL----------------GKLSSLRNLDFSL 281
            +++    F A     + SLILS+     +                  + S ++  D S 
Sbjct: 227 SMAKRF--FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK 284

Query: 282 NMLNGSIPLSLGQISHLEYLDLSNNKF 308
           + +   +       + LE L L+ N+ 
Sbjct: 285 SKIFALLKSVFSHFTDLEQLTLAQNEI 311

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 29/145 (20%), Positives = 47/145 (32%), Gaps = 15/145 (10%)

Query: 171 TSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDF 230
             +  +DLS N     +    S+L +L    L +         +   +F  L  L  +  
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQ--FLKVEQQTPGLV-IRNNTFRGLSSLIILKL 86

Query: 231 SSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA------ALGKLSSLRNLDFSLNML 284
              +  Q  +   +     G   L  L L+ C +            L+SL  L    N +
Sbjct: 87  DYNQFLQLETGAFN-----GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI 141

Query: 285 NGSIPLSL-GQISHLEYLDLSNNKF 308
               P S    +     LDL+ NK 
Sbjct: 142 KKIQPASFFLNMRRFHVLDLTFNKV 166

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 35/149 (23%), Positives = 57/149 (38%), Gaps = 19/149 (12%)

Query: 171 TSLKQIDLSHNQFNFTSPGW-LSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSID 229
           +    +DLSHN  +     W  ++L  L S  L L       + +   +F+ +  L  +D
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHS--LLLSHN--HLNFISSEAFVPVPNLRYLD 94

Query: 230 FSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA----ALGKLSSLRNLDFSLNMLN 285
            SS  L      +          AL  L+L +  I      A   ++ L+ L  S N ++
Sbjct: 95  LSSNHLHTLDEFLFS-----DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149

Query: 286 GSIP----LSLGQISHLEYLDLSNNKFVT 310
              P        ++  L  LDLS+NK   
Sbjct: 150 -RFPVELIKDGNKLPKLMLLDLSSNKLKK 177

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 33/116 (28%), Positives = 43/116 (37%), Gaps = 11/116 (9%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSW--LSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152
            + NL+YLDLS     LH  +L     S L  LE + L   H+          +  L  +
Sbjct: 86  PVPNLRYLDLS--SNHLH--TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141

Query: 153 VLSYNQFQGKIP----STLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNL 204
            LS NQ   + P         L  L  +DLS N+        L KL       L L
Sbjct: 142 YLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 28/166 (16%), Positives = 51/166 (30%), Gaps = 7/166 (4%)

Query: 97  SNLQYLDLSWIDCRL-HVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLS 155
           S    LDLS     L  + +    + L  L  + L   HL   S      + +L ++ LS
Sbjct: 39  SYTALLDLS--HNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96

Query: 156 YNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLI 215
            N           +L +L+ + L +N            + +L    L L     +  +  
Sbjct: 97  SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK--LYLSQN--QISRFP 152

Query: 216 PTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSH 261
                   KL  +    +  ++     L        +    L L +
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 48/217 (22%), Positives = 71/217 (32%), Gaps = 49/217 (22%)

Query: 97  SNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSY 156
            +   L LS  +  L+  SL+ L     L  ++L +  L K       +L  L  + LS+
Sbjct: 31  KDTTILHLS--ENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSH 86

Query: 157 NQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLN---LVSCMVRFHQ 213
           NQ Q  +P     L +L  +D+S N+      G L  L EL    L    L +       
Sbjct: 87  NQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT------- 138

Query: 214 LIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA----ALG 269
           L P       KL                               L L++  ++      L 
Sbjct: 139 LPPGLLTPTPKLEK-----------------------------LSLANNNLTELPAGLLN 169

Query: 270 KLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNN 306
            L +L  L    N L  +IP        L +  L  N
Sbjct: 170 GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 37/159 (23%), Positives = 54/159 (33%), Gaps = 18/159 (11%)

Query: 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQ 213
           LS N       +TL   T L Q++L   +   T       L  L +  L+L        Q
Sbjct: 38  LSENLLYTFSLATLMPYTRLTQLNLDRAE--LTKLQVDGTLPVLGT--LDLSHNQ---LQ 90

Query: 214 LIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA----ALG 269
            +P     L  LT +D S  +L   +          G   L  L L   ++       L 
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRL-TSLPL--GALR--GLGELQELYLKGNELKTLPPGLLT 145

Query: 270 KLSSLRNLDFSLNMLNGSIPLSL-GQISHLEYLDLSNNK 307
               L  L  + N L   +P  L   + +L+ L L  N 
Sbjct: 146 PTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENS 183

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 34/142 (23%), Positives = 52/142 (36%), Gaps = 18/142 (12%)

Query: 171 TSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDF 230
                + LS N     S   L     L+   LNL    +     +      L  L ++D 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQ--LNLDRAEL---TKLQV-DGTLPVLGTLDL 84

Query: 231 SSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA----ALGKLSSLRNLDFSLNMLNG 286
           S  +L Q +  +          AL  L +S  ++++    AL  L  L+ L    N L  
Sbjct: 85  SHNQL-QSLPLLGQ-----TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK- 137

Query: 287 SIPLSL-GQISHLEYLDLSNNK 307
           ++P  L      LE L L+NN 
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNN 159

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 24/195 (12%)

Query: 119 LSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDL 178
              L      +LG+  +          L  +       +  Q  + + +   T+LK++ L
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHL 70

Query: 179 SHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQD 238
           SHNQ        +S L+ L   L  L    V  ++L   + I    L+ +   + +L   
Sbjct: 71  SHNQ--------ISDLSPLKD-LTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELR-- 119

Query: 239 ISQVLDIFSAYGTYALVSLILSHCQIS--AALGKLSSLRNLDFSLNMLNGSIPLSLGQIS 296
                D  S      L  L + + ++     LG LS L  LD   N +  +  L+  ++ 
Sbjct: 120 -----DTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLT--RLK 172

Query: 297 HLEYLDLSNNKFVTK 311
            + ++DL+  K V +
Sbjct: 173 KVNWIDLTGQKCVNE 187

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 52/242 (21%), Positives = 78/242 (32%), Gaps = 33/242 (13%)

Query: 98  NLQYLDLSWIDCRLHVDSLSWLSSLLL----LEHIDLGQVHLGKA-----SDCWIYSLRH 148
            +Q L L   +C L       LSS L     L+ + L    LG A      +  +     
Sbjct: 86  KIQKLSLQ--NCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR 143

Query: 149 LFFIVLSYNQFQGK----IPSTLGNLTSLKQIDLSHNQFNFTSPGWLS---KLNELSSFL 201
           L  + L Y          + S L      K++ +S+N  N      L    K +      
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEA 203

Query: 202 LNLVSCMVRFH--QLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLIL 259
           L L SC V     + +         L  +   S KL       L     + +  L +L +
Sbjct: 204 LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263

Query: 260 SHCQISA--------ALGKLSSLRNLDFSLNML--NGSIPLSLG---QISHLEYLDLSNN 306
             C I+A         L    SL+ L  + N L   G+  L          LE L + + 
Sbjct: 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323

Query: 307 KF 308
            F
Sbjct: 324 SF 325

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 50/245 (20%), Positives = 80/245 (32%), Gaps = 33/245 (13%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLL----LEHIDLGQVHLGKA-----SDCWIYS 145
           +   L+ L L    C +  D+   L  ++     L  + LG   LG           ++ 
Sbjct: 197 SPCQLEALKLES--CGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHP 254

Query: 146 LRHLFFIVLSYNQFQGK----IPSTLGNLTSLKQIDLSHNQFNFTSPGWLSK-LNELSSF 200
              L  + +       K    +   L    SLK++ L+ N+        L + L E    
Sbjct: 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ 314

Query: 201 L--LNLVSCMVRFH--QLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVS 256
           L  L + SC           +   +   L  +  S+ +L     + L          L  
Sbjct: 315 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV 374

Query: 257 LILSHCQI--------SAALGKLSSLRNLDFSLNMLN--GSIPLSLG---QISHLEYLDL 303
           L L+ C +        +A L    SLR LD S N L   G + L          LE L L
Sbjct: 375 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL 434

Query: 304 SNNKF 308
            +  +
Sbjct: 435 YDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 44/247 (17%), Positives = 77/247 (31%), Gaps = 37/247 (14%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLL----LEHIDLGQVHLGKA-----SDCWIYS 145
               L+ L L    C L   S   L+S+L      + + +    + +A           S
Sbjct: 140 PQCRLEKLQLE--YCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDS 197

Query: 146 LRHLFFIVLSYNQFQGK----IPSTLGNLTSLKQIDLSHNQFNFT-----SPGWLSKLNE 196
              L  + L            +   + +  SL+++ L  N+          PG L   + 
Sbjct: 198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR 257

Query: 197 LSSFLLNLVSCMVRFH--QLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYAL 254
           L +  L +  C +       +         L  +  +  +L  + +++L          L
Sbjct: 258 LRT--LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL 315

Query: 255 VSLILSHCQISA--------ALGKLSSLRNLDFSLNML--NGSIPLSLG---QISHLEYL 301
            SL +  C  +A         L +   L  L  S N L   G   L  G     S L  L
Sbjct: 316 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 375

Query: 302 DLSNNKF 308
            L++   
Sbjct: 376 WLADCDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.6 bits (101), Expect = 9e-05
 Identities = 43/231 (18%), Positives = 75/231 (32%), Gaps = 41/231 (17%)

Query: 97  SNLQYLDLSWIDCRLHVDSLSWLSSLLL-LEHIDLGQVHLGKASDCWIYSLRHLFFIVLS 155
            ++Q LD+      L     + L  LL   + + L    L +A        + +      
Sbjct: 3   LDIQSLDIQC--EELSDARWAELLPLLQQCQVVRLDDCGLTEA------RCKDIS----- 49

Query: 156 YNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSK-LNELSSFL--LNLVSCMVRFH 212
                    S L    +L +++L  N+        + + L   S  +  L+L +C +   
Sbjct: 50  ---------SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA 100

Query: 213 --QLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA---- 266
              ++ ++   L  L  +  S   L     Q+L          L  L L +C +SA    
Sbjct: 101 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160

Query: 267 ----ALGKLSSLRNLDFSLNMLNGSIPLSLGQI-----SHLEYLDLSNNKF 308
                L      + L  S N +N +    L Q        LE L L +   
Sbjct: 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV 211

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 41/195 (21%), Positives = 77/195 (39%), Gaps = 17/195 (8%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVL 154
           +   LQ LDLS   C +         SL  L  + L    +   +      L  L  +V 
Sbjct: 50  SFPELQVLDLS--RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 155 SYNQFQGKIPS-TLGNLTSLKQIDLSHNQF-NFTSPGWLSKLNELSSFLLNLVSCMVRFH 212
                   + +  +G+L +LK+++++HN   +F  P + S L  L    L+L S   +  
Sbjct: 108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH--LDLSSN--KIQ 162

Query: 213 QLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDI-FSAYGTYALVSLILSHCQISA----A 267
            +  T    L ++  +   ++ L   ++ +  I   A+    L  L L   Q+ +     
Sbjct: 163 SIYCTDLRVLHQMPLL---NLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGI 219

Query: 268 LGKLSSLRNLDFSLN 282
             +L+SL+ +    N
Sbjct: 220 FDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 33/183 (18%), Positives = 55/183 (30%), Gaps = 35/183 (19%)

Query: 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKL----------NELSSF--- 200
           LS+N  +     +  +   L+ +DLS  +      G    L          N + S    
Sbjct: 35  LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94

Query: 201 ---------LLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGT 251
                     L  V        L       L  L  ++ +   +        + FS    
Sbjct: 95  AFSGLSSLQKLVAVET--NLASLENFPIGHLKTLKELNVAHNLIQSFKLP--EYFS--NL 148

Query: 252 YALVSLILSHCQISA----ALGKLSSLRNLDFSLNMLN---GSIPLSLGQISHLEYLDLS 304
             L  L LS  +I +     L  L  +  L+ SL++       I     +   L+ L L 
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALD 208

Query: 305 NNK 307
            N+
Sbjct: 209 TNQ 211

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 16/143 (11%)

Query: 171 TSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDF 230
            S K +DLS N              EL    L+L  C      +   ++  L  L+++  
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQV--LDLSRC--EIQTIEDGAYQSLSHLSTLIL 83

Query: 231 SSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA----ALGKLSSLRNLDFSLNMLNG 286
           +   +    S  L  FS  G  +L  L+     +++     +G L +L+ L+ + N++  
Sbjct: 84  TGNPIQ---SLALGAFS--GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ- 137

Query: 287 SIPLS--LGQISHLEYLDLSNNK 307
           S  L      +++LE+LDLS+NK
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNK 160

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 37/223 (16%), Positives = 80/223 (35%), Gaps = 29/223 (13%)

Query: 95  NLSNLQYLDLSWIDCRLHV-----DSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHL 149
              +L+ +++S  D    +      +L  L  + + +  +L  ++     +     L +L
Sbjct: 52  GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQN-----LPNL 106

Query: 150 FFIVLSYNQFQGKIPS-TLGNLTSLKQIDLSHN-QFNFTSPGWLSKLNELSSFLLNLVSC 207
            ++++S    +  +P     +      +D+  N   +         L+  S  +L L   
Sbjct: 107 QYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV-ILWLNKN 164

Query: 208 MVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS-- 265
            ++    I  S     +L  ++ S     +++    D+F   G    V L +S  +I   
Sbjct: 165 GIQE---IHNSAFNGTQLDELNLSDNNNLEELPN--DVFH--GASGPVILDISRTRIHSL 217

Query: 266 --AALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNN 306
               L  L  LR    S   L   +P +L ++  L    L+  
Sbjct: 218 PSYGLENLKKLRAR--STYNLK-KLP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 30/172 (17%), Positives = 48/172 (27%), Gaps = 13/172 (7%)

Query: 145 SLRHLFFIVLSYNQFQGKIPS-TLGNLTSLKQIDLSH-NQFNFTSPGWLSKLNELSSFLL 202
               L  I +S N     I +    NL  L +I +   N   + +P     L  L    L
Sbjct: 52  GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY--L 109

Query: 203 NLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHC 262
            + +       L     I   +   +D         I +  + F    ++  V L L+  
Sbjct: 110 LISNT--GIKHLPDVHKIHSLQKVLLDIQDNINIHTIER--NSFVGL-SFESVILWLNKN 164

Query: 263 QISA----ALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
            I      A              N L           S    LD+S  +  +
Sbjct: 165 GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 33/160 (20%), Positives = 59/160 (36%), Gaps = 17/160 (10%)

Query: 154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQ 213
           L  N+           LT L+ + L+ N+      G   +L       L  +       Q
Sbjct: 44  LQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN-----LETLWVTDNKLQ 98

Query: 214 LIPTS-FIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA----AL 268
            +P   F +L  L  +     +L + +     +F       L  L L + ++ +      
Sbjct: 99  ALPIGVFDQLVNLAELRLDRNQL-KSLPP--RVFD--SLTKLTYLSLGYNELQSLPKGVF 153

Query: 269 GKLSSLRNLDFSLNMLNGSIPLSL-GQISHLEYLDLSNNK 307
            KL+SL+ L    N L   +P     +++ L+ L L NN+
Sbjct: 154 DKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQ 192

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 30/171 (17%), Positives = 50/171 (29%), Gaps = 41/171 (23%)

Query: 145 SLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNL 204
           S + L    L     +        NL ++ +I +S +               L       
Sbjct: 32  STQTLK---LIETHLRTIPSHAFSNLPNISRIYVSID-------------VTLQQ----- 70

Query: 205 VSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQI 264
                    L   SF  L K+T I+  + +    I    D         L  L + +  +
Sbjct: 71  ---------LESHSFYNLSKVTHIEIRNTRNLTYIDP--DALK--ELPLLKFLGIFNTGL 117

Query: 265 S-----AALGKLSSLRNLDFSLNMLNGSIPLSL--GQISHLEYLDLSNNKF 308
                   +        L+ + N    SIP++   G  +    L L NN F
Sbjct: 118 KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 37/231 (16%), Positives = 71/231 (30%), Gaps = 49/231 (21%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLL----LEHIDLGQVHLGKASDCWIYSLRHLF 150
              +++ + LS     +  ++  WLS  +     LE  +   +  G+  D    +LR L 
Sbjct: 30  EDDSVKEIVLS--GNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL 87

Query: 151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVR 210
                           L     L  + LS N F  T+   L       + L +L      
Sbjct: 88  --------------QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL------ 127

Query: 211 FHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQI------ 264
                   ++    L     +  K+++ + ++     A     L S+I    ++      
Sbjct: 128 --------YLHNNGLG--PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177

Query: 265 --SAALGKLSSLRNLDFSLNMLN-----GSIPLSLGQISHLEYLDLSNNKF 308
             +        L  +    N +        +   L     L+ LDL +N F
Sbjct: 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 50/327 (15%), Positives = 94/327 (28%), Gaps = 76/327 (23%)

Query: 22  GALLKLKRNLKDLSNCLASWNIGDGDCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAE 81
            A+L    ++K++   L+   IG  +  +W+     +    +      + F      +  
Sbjct: 25  FAVLLEDDSVKEI--VLSGNTIGT-EAARWLSENIASKK-DLEIAEFSDIFTGRVKDEIP 80

Query: 82  DDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLL----LEHIDLGQVHLGK 137
           +    +   L+      L  + LS  D      +   L   L     LEH+ L    LG 
Sbjct: 81  EALRLLLQALL--KCPKLHTVRLS--DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP 136

Query: 138 A-------------SDCWIYSLRHLFFIVLSYNQFQGK----IPSTLGNLTSLKQIDLSH 180
                          +    +   L  I+   N+ +         T  +   L  + +  
Sbjct: 137 QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ 196

Query: 181 NQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLS---- 236
           N       G    L E       L  C                +L  +D      +    
Sbjct: 197 NGI--RPEGIEHLLLEG------LAYC---------------QELKVLDLQDNTFTHLGS 233

Query: 237 QDISQVLDIFSAYGTYALVSLILSHCQISAA----------LGKLSSLRNLDFSLNMLNG 286
             ++  L  +       L  L L+ C +SA             +   L+ L    N +  
Sbjct: 234 SALAIALKSWPN-----LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288

Query: 287 SIPLSLGQ-----ISHLEYLDLSNNKF 308
               +L       +  L +L+L+ N+F
Sbjct: 289 DAVRTLKTVIDEKMPDLLFLELNGNRF 315

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 8e-05
 Identities = 45/330 (13%), Positives = 92/330 (27%), Gaps = 103/330 (31%)

Query: 24  LLKLKRNLKDLSN---------------CLAS-----------------W-NIG----DG 46
            LKL++ L +L                  +A                  W N+       
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 47  DCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAED-------DDHYMRSKLVVGNLSNL 99
              + +      +  +    +  +    L+    +           Y    LV+ N+ N 
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256

Query: 100 QYLDLSWIDCRLHV--------DSLSWLS-SLLLLEHIDLGQVH------LGKASDCWIY 144
           +  +   + C++ +        D LS  + + + L+H  +          L K  DC   
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316

Query: 145 SLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWL----SKLNE-LSS 199
            L           +     P  L  +    +  L+          W      KL   + S
Sbjct: 317 DLPR---------EVLTTNPRRLSIIAESIRDGLATWDN------WKHVNCDKLTTIIES 361

Query: 200 FLLNLVSCMVR--FHQLIPTSFIRLCKLTSIDF-SSVKLSQDISQVLDIFSAYGTYALVS 256
            L  L     R  F +L            S+ F  S  +    + +L +       + V 
Sbjct: 362 SLNVLEPAEYRKMFDRL------------SV-FPPSAHIP---TILLSLIWFDVIKSDVM 405

Query: 257 LILSHCQISAALGK-----LSSLRNLDFSL 281
           ++++     + + K       S+ ++   L
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLEL 435

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 5e-04
 Identities = 35/206 (16%), Positives = 71/206 (34%), Gaps = 61/206 (29%)

Query: 1   TMVNISFCYGKSYVGCKESER-----GALLKLKRNLKDL----SNCLASWNIGDGDCCKW 51
            MV ++  +  S V  +  E         L+LK  L++      + +  +NI        
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT----- 458

Query: 52  VGNFCNNLTGHILELNLENPF----GY-LKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSW 106
              F ++    ++   L+  F    G+ LK  +  +     R            +LD  +
Sbjct: 459 ---FDSD---DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV----------FLDFRF 502

Query: 107 IDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPST 166
           ++ ++  DS +W +S  +L    L Q+   K             +I  +  +++  + + 
Sbjct: 503 LEQKIRHDSTAWNASGSILN--TLQQLKFYKP------------YICDNDPKYERLVNAI 548

Query: 167 LGNL------------TSLKQIDLSH 180
           L  L            T L +I L  
Sbjct: 549 LDFLPKIEENLICSKYTDLLRIALMA 574

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.0 bits (101), Expect = 9e-05
 Identities = 40/300 (13%), Positives = 93/300 (31%), Gaps = 34/300 (11%)

Query: 25  LKLKRNLKDLSNCLASWNIGDGDCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDD 84
           LK K +  D +     W        + + +    L     E+ L+            DD 
Sbjct: 73  LKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLE----EIRLKR-------MVVTDDC 121

Query: 85  HYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIY 144
                +L+  +  N + L LS  +        +  ++   L+ +DL +  +   S  W+ 
Sbjct: 122 L----ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLS 177

Query: 145 SLRHLF--FIVLSYNQFQGKI-----PSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNEL 197
                +   + L+ +    ++        +    +LK + L+           L +  +L
Sbjct: 178 HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQL 237

Query: 198 SSFLLNLVSCMVR--FHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALV 255
                   +  VR   +  +  +     +L  +      +   +  V  + S      L 
Sbjct: 238 EELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSR-----LT 292

Query: 256 SLILSHCQIS-----AALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT 310
           +L LS+  +        L +   L+ L     + +  + +       L  L +  ++   
Sbjct: 293 TLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFV 352

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 4/102 (3%)

Query: 105 SWIDC--RLHVDSLSWLSSLLLLEHIDL-GQVHLGKASDCWIYSLRHLFFIVLSYNQFQG 161
           S + C     +DSL  L     L  + +  Q HL       +  L  L  + +  +  + 
Sbjct: 11  SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 162 KIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLN 203
             P        L +++LS N     S   +  L+ L   +L+
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLS 111

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 39/252 (15%), Positives = 81/252 (32%), Gaps = 42/252 (16%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLL-----LEHIDLGQVHLGKASDCWI-----Y 144
             +++  L+LS     L   +   L  +L      +  ++L    L   S   +      
Sbjct: 49  TPASVTSLNLS--GNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAA 106

Query: 145 SLRHLFFIVLSYNQFQGKIPSTLGNL-----TSLKQIDLSHNQFNFTSPGWLSKLNELSS 199
               +  + L +N F  K  S           S+  ++L  N     S   L ++  L++
Sbjct: 107 IPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI--LAA 164

Query: 200 FLLNLVSCMVRFHQLIPTSFIRL--------CKLTSIDFSSVKLSQDISQVLDIFSAYGT 251
              N+ S  +R + L   +   L          +TS+D S+  L       L    +   
Sbjct: 165 IPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIP 224

Query: 252 YALVSLILSHCQI--------SAALGKLSSLRNLDFSLNMLNG-------SIPLSLGQIS 296
             +VSL L    +              L  L+ +    +++         ++  +   I 
Sbjct: 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ 284

Query: 297 HLEYLDLSNNKF 308
            +  +D +  + 
Sbjct: 285 KIILVDKNGKEI 296

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	313
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.95
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.94
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.94
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.94
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.94
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.94
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.94
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.93
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.93
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.93
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.92
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.92
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.92
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.92
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.91
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.9
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.85
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.85
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.83
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.82
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.81
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.81
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.74
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.74
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.7
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.66
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.66
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.65
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.64
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.64
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.59
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.55
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.54
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.54
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.53
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.52
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.49
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.45
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.39
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.35
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.34
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.34
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.32
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.31
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.29
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.25
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.21
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.18
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.02
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.86
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.64
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.59
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.49
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.42
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.42
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.28
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.24
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.23
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.99
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.99
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.65
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.55
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.47
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.33
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.59
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.22

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.5e-41  Score=296.89  Aligned_cols=270  Identities=23%  Similarity=0.400  Sum_probs=147.6

Q ss_pred             cCCCHHhHHHHHHhhhhcccCCCCCCCCCCCCCCCcc--cCceEecCCC--CCEEEEecCCCCCCcceecCCCCcccc--
Q 044980           14 VGCKESERGALLKLKRNLKDLSNCLASWNIGDGDCCK--WVGNFCNNLT--GHILELNLENPFGYLKYSDAEDDDHYM--   87 (313)
Q Consensus        14 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~c~--~~~v~c~~~~--~~v~~l~l~~~l~~L~~L~l~~n~~~~--   87 (313)
                      +.|.++|++||++||+++.||. .+.+|.. +.+||.  |.||.|...+  ++|+.+++.+            |.+.+  
T Consensus         1 ~~c~~~~~~aL~~~k~~~~~~~-~l~~W~~-~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~------------~~l~~~~   66 (313)
T 1ogq_A            1 ELCNPQDKQALLQIKKDLGNPT-TLSSWLP-TTDCCNRTWLGVLCDTDTQTYRVNNLDLSG------------LNLPKPY   66 (313)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCCG-GGTTCCT-TSCTTTTCSTTEEECCSSSCCCEEEEEEEC------------CCCSSCE
T ss_pred             CCCCHHHHHHHHHHHHhcCCcc-cccCCCC-CCCCCcCCCcceEeCCCCCCceEEEEECCC------------CCccCCc
Confidence            3589999999999999998876 6789986 778998  9999997644  6788777654            44444  


Q ss_pred             cccccccCCCCCcEeeccC-CCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCC
Q 044980           88 RSKLVVGNLSNLQYLDLSW-IDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPS  165 (313)
Q Consensus        88 ~~~~~l~~l~~L~~L~L~~-n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~  165 (313)
                      .+|..+.++++|++|++++ |.+   .+.+| .+.++++|++|++++|.+++..|..+..+++|++|++++|.+++.+|.
T Consensus        67 ~~~~~l~~l~~L~~L~L~~~n~l---~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  143 (313)
T 1ogq_A           67 PIPSSLANLPYLNFLYIGGINNL---VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP  143 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTE---ESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred             ccChhHhCCCCCCeeeCCCCCcc---cccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh
Confidence            4444444555555555542 332   22222 344445555555555554444444444455555555555555444444


Q ss_pred             CCCCCCCCCEEEccCCCCCCCCchhhhcCc-ccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhh
Q 044980          166 TLGNLTSLKQIDLSHNQFNFTSPGWLSKLN-ELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLD  244 (313)
Q Consensus       166 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~-~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~  244 (313)
                      .+..+++|++|++++|.+++.+|..+..+. .|+.  +++++|  .+.+.+|..+..+. |+.|++++|.+.+..|..+.
T Consensus       144 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~--L~L~~N--~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~  218 (313)
T 1ogq_A          144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS--MTISRN--RLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFG  218 (313)
T ss_dssp             GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCE--EECCSS--EEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCC
T ss_pred             HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcE--EECcCC--eeeccCChHHhCCc-ccEEECcCCcccCcCCHHHh
Confidence            444455555555555554444444444444 4444  444444  34444444444443 55555555544444444444


Q ss_pred             hhccccccCccEEEccccccccc---ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCcc
Q 044980          245 IFSAYGTYALVSLILSHCQISAA---LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       245 ~~~~~~~~~L~~L~Ls~n~l~~~---~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~  310 (313)
                      .++     +|+.|++++|.+++.   +..+++|++|++++|.+++.+|..+..+++|++|++++|+++|
T Consensus       219 ~l~-----~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  282 (313)
T 1ogq_A          219 SDK-----NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             TTS-----CCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred             cCC-----CCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccc
Confidence            444     455555555444433   3334445555555555444444444444455555555554443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.5e-38  Score=305.96  Aligned_cols=278  Identities=22%  Similarity=0.259  Sum_probs=184.9

Q ss_pred             CCccCCCHHhHHHHHHhhhhcccCCCCCCCCCCCCCCCcccCceEecCCCCCEEEEecCC--------------------
Q 044980           11 KSYVGCKESERGALLKLKRNLKDLSNCLASWNIGDGDCCKWVGNFCNNLTGHILELNLEN--------------------   70 (313)
Q Consensus        11 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~c~~~~v~c~~~~~~v~~l~l~~--------------------   70 (313)
                      ++.+.+.++|++||++||+++.||. .+++|+. +.+||.|.||.|+  .++|+.+++++                    
T Consensus         4 ~~~~~~~~~~~~all~~k~~~~~~~-~l~~W~~-~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L   79 (768)
T 3rgz_A            4 ASPSQSLYREIHQLISFKDVLPDKN-LLPDWSS-NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGL   79 (768)
T ss_dssp             ----CCHHHHHHHHHHHHTTCSCTT-SSTTCCT-TSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTC
T ss_pred             CccccCCHHHHHHHHHHHhhCCCcc-cccCCCC-CCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcc
Confidence            3444457889999999999999988 8899985 7899999999997  68999998864                    


Q ss_pred             ------------------CCCCcceecCCCCcccccccc--cccCCCCCcEeeccCCCCCCCCCCch-h-hccCCCCCEE
Q 044980           71 ------------------PFGYLKYSDAEDDDHYMRSKL--VVGNLSNLQYLDLSWIDCRLHVDSLS-W-LSSLLLLEHI  128 (313)
Q Consensus        71 ------------------~l~~L~~L~l~~n~~~~~~~~--~l~~l~~L~~L~L~~n~~~~~~~~~~-~-~~~l~~L~~L  128 (313)
                                        .+++|++|++++|.+.+.+|.  .++++++|++|++++|.+   .+..| . +.++++|++|
T Consensus        80 ~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l---~~~~~~~~~~~l~~L~~L  156 (768)
T 3rgz_A           80 ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL---DFPGKVSGGLKLNSLEVL  156 (768)
T ss_dssp             CEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEE---ECCSSCCSCCCCTTCSEE
T ss_pred             cccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCcc---CCcCCHHHhccCCCCCEE
Confidence                              357889999999999888888  888999999999999885   23333 2 3677888888


Q ss_pred             EcCCccCCCCCchh---hhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccc
Q 044980          129 DLGQVHLGKASDCW---IYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLV  205 (313)
Q Consensus       129 ~l~~n~l~~~~~~~---~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~  205 (313)
                      ++++|.+++..+..   +..+++|++|++++|.+.+..|.  ..+++|++|++++|.+++.+|. ++.+++|++  |+++
T Consensus       157 ~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~--L~Ls  231 (768)
T 3rgz_A          157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQH--LDIS  231 (768)
T ss_dssp             ECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCE--EECC
T ss_pred             ECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCE--EECc
Confidence            88888887766655   55666677777777766654442  5566666666666666665555 666666666  6666


Q ss_pred             ccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccC-CCCCCEEEcc
Q 044980          206 SCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGK-LSSLRNLDFS  280 (313)
Q Consensus       206 ~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~-~~~L~~L~l~  280 (313)
                      +|  .+.+.+|..++.+++|++|++++|.+.+.+|..  .++     +|+.|++++|.+++.    +.. +++|++|+++
T Consensus       232 ~n--~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~-----~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls  302 (768)
T 3rgz_A          232 GN--KLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLK-----SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS  302 (768)
T ss_dssp             SS--CCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCT-----TCCEEECCSSEEEESCCCCSCTTCTTCSEEECC
T ss_pred             CC--cCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccC-----CCCEEECcCCccCCccCHHHHhhcCcCCEEECc
Confidence            66  555556666666666666666666665544432  222     455555555544432    222 2444444444


Q ss_pred             CCccccccCccccCCCCCCEeeCCCCcCc
Q 044980          281 LNMLNGSIPLSLGQISHLEYLDLSNNKFV  309 (313)
Q Consensus       281 ~n~l~~~ip~~l~~l~~L~~L~l~~n~l~  309 (313)
                      +|.+++.+|..+..+++|++|++++|.++
T Consensus       303 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  331 (768)
T 3rgz_A          303 GNHFYGAVPPFFGSCSLLESLALSSNNFS  331 (768)
T ss_dssp             SSEEEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             CCcCCCccchHHhcCCCccEEECCCCccc
Confidence            44444444444444444444444444444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=7.7e-36  Score=284.39  Aligned_cols=259  Identities=19%  Similarity=0.240  Sum_probs=157.1

Q ss_pred             CHHhHHHHHHhhhhcccCCCCC--------CCCCCCCCCCccc---CceEecCCCCCEEEEecCC------------CCC
Q 044980           17 KESERGALLKLKRNLKDLSNCL--------ASWNIGDGDCCKW---VGNFCNNLTGHILELNLEN------------PFG   73 (313)
Q Consensus        17 ~~~~~~~l~~~~~~~~~~~~~~--------~~w~~~~~~~c~~---~~v~c~~~~~~v~~l~l~~------------~l~   73 (313)
                      ..+|++||.++++++.++.+..        .+|+. +.++|.|   .||.|+. .++|+++++.+            +++
T Consensus        28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~-~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~g~lp~~l~~L~  105 (636)
T 4eco_A           28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF-NKELDMWGAQPGVSLNS-NGRVTGLSLEGFGASGRVPDAIGQLT  105 (636)
T ss_dssp             HHHHHHHHHHHHHHTTGGGCCCCC------CCCCC-SSCGGGTTCCTTEEECT-TCCEEEEECTTSCCEEEECGGGGGCT
T ss_pred             HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC-CCCcccccCCCCeEEcC-CCCEEEEEecCcccCCcCChHHhcCc
Confidence            3569999999999987665442        37997 7899999   9999975 48999999986            567


Q ss_pred             CcceecCCCCcc--------------------------------------------------------------------
Q 044980           74 YLKYSDAEDDDH--------------------------------------------------------------------   85 (313)
Q Consensus        74 ~L~~L~l~~n~~--------------------------------------------------------------------   85 (313)
                      +|+.|++++|.+                                                                    
T Consensus       106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~  185 (636)
T 4eco_A          106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD  185 (636)
T ss_dssp             TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCT
T ss_pred             cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhh
Confidence            777777776632                                                                    


Q ss_pred             ----------cccccccccCCCCCcEeeccCCCCCCCCCC-----------------ch-hhc--cCCCCCEEEcCCccC
Q 044980           86 ----------YMRSKLVVGNLSNLQYLDLSWIDCRLHVDS-----------------LS-WLS--SLLLLEHIDLGQVHL  135 (313)
Q Consensus        86 ----------~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-----------------~~-~~~--~l~~L~~L~l~~n~l  135 (313)
                                ++ +|..++++++|++|+|++|.+   .+.                 +| .+.  ++++|++|++++|.+
T Consensus       186 l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l---~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l  261 (636)
T 4eco_A          186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPF---VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN  261 (636)
T ss_dssp             TTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCC---CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT
T ss_pred             hhhccccCCCcc-CCHHHhcccCCCEEECcCCcc---ccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC
Confidence                      23 566677777777777777765   221                 33 444  666666666666666


Q ss_pred             CCCCchhhhhcCccCeeeccCcc-cCc-CCCCCCCCC------CCCCEEEccCCCCCCCCch--hhhcCccccccccccc
Q 044980          136 GKASDCWIYSLRHLFFIVLSYNQ-FQG-KIPSTLGNL------TSLKQIDLSHNQFNFTSPG--WLSKLNELSSFLLNLV  205 (313)
Q Consensus       136 ~~~~~~~~~~l~~L~~L~L~~n~-~~~-~~~~~~~~l------~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~~~L~l~  205 (313)
                      .+.+|..+..+++|++|++++|. +++ .+|..++.+      ++|++|++++|.++ .+|.  .++.+++|+.  |+++
T Consensus       262 ~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~--L~L~  338 (636)
T 4eco_A          262 LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGM--LECL  338 (636)
T ss_dssp             CSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCE--EECC
T ss_pred             CccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCE--EeCc
Confidence            66666666666666666666666 665 555555443      56666666666665 5555  5666666666  5555


Q ss_pred             ccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccC-ccEEEccccccccc---ccCC--CCCCEEEc
Q 044980          206 SCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYA-LVSLILSHCQISAA---LGKL--SSLRNLDF  279 (313)
Q Consensus       206 ~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~-L~~L~Ls~n~l~~~---~~~~--~~L~~L~l  279 (313)
                      +|  .+.+.+| .++.+++|++|++++|.+. .+|..+..++     + |+.|++++|.++..   +...  ++|++|++
T Consensus       339 ~N--~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~-----~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~L  409 (636)
T 4eco_A          339 YN--QLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFT-----EQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDF  409 (636)
T ss_dssp             SC--CCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEEC-----TTCCEEECCSSCCSSCCSCCCTTCSSCEEEEEC
T ss_pred             CC--cCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhc-----ccCcEEEccCCcCcccchhhhhcccCccCEEEC
Confidence            55  4444444 4444555555555555544 3344444443     4 55555555544422   2221  24444444


Q ss_pred             cCCccccccCcccc
Q 044980          280 SLNMLNGSIPLSLG  293 (313)
Q Consensus       280 ~~n~l~~~ip~~l~  293 (313)
                      ++|.+.+.+|..+.
T Consensus       410 s~N~l~~~~p~~l~  423 (636)
T 4eco_A          410 SYNEIGSVDGKNFD  423 (636)
T ss_dssp             CSSCTTTTTTCSSC
T ss_pred             cCCcCCCcchhhhc
Confidence            44444444444443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=5.7e-35  Score=256.79  Aligned_cols=273  Identities=16%  Similarity=0.170  Sum_probs=233.3

Q ss_pred             CCHHhHHHHHHhhhhcc-cCCCCCCCCC---CCCCCCcccCceEecCCCCCEEEEecCCCCCCcceecCCCCcccccccc
Q 044980           16 CKESERGALLKLKRNLK-DLSNCLASWN---IGDGDCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKL   91 (313)
Q Consensus        16 ~~~~~~~~l~~~~~~~~-~~~~~~~~w~---~~~~~~c~~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~   91 (313)
                      +..+|++||++||..+. |+.++...|.   ....++|.|.|+.|......+..    ...++++.|++++|.+. .+|.
T Consensus        24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~----~~~~~l~~L~L~~n~l~-~lp~   98 (328)
T 4fcg_A           24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLED----ATQPGRVALELRSVPLP-QFPD   98 (328)
T ss_dssp             CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHH----HTSTTCCEEEEESSCCS-SCCS
T ss_pred             cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhc----ccccceeEEEccCCCch-hcCh
Confidence            45779999999999984 7777778883   22678999999999521110000    03456777777889988 6888


Q ss_pred             cccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCC-
Q 044980           92 VVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGN-  169 (313)
Q Consensus        92 ~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-  169 (313)
                      .+.++++|++|+|++|.+   . .+| .+.++++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+.. 
T Consensus        99 ~l~~l~~L~~L~L~~n~l---~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~  173 (328)
T 4fcg_A           99 QAFRLSHLQHMTIDAAGL---M-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST  173 (328)
T ss_dssp             CGGGGTTCSEEEEESSCC---C-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE
T ss_pred             hhhhCCCCCEEECCCCCc---c-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc
Confidence            899999999999999996   2 455 6889999999999999998 56888999999999999999998899987765 


Q ss_pred             --------CCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcch
Q 044980          170 --------LTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQ  241 (313)
Q Consensus       170 --------l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  241 (313)
                              +++|++|++++|.++ .+|..+..+++|++  |++++|  .+.+ +|..++.+++|++|++++|.+.+.+|.
T Consensus       174 ~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~--L~L~~N--~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~  247 (328)
T 4fcg_A          174 DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS--LKIRNS--PLSA-LGPAIHHLPKLEELDLRGCTALRNYPP  247 (328)
T ss_dssp             C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCE--EEEESS--CCCC-CCGGGGGCTTCCEEECTTCTTCCBCCC
T ss_pred             cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCE--EEccCC--CCCc-CchhhccCCCCCEEECcCCcchhhhHH
Confidence                    999999999999998 78889999999999  999998  5554 677899999999999999999999999


Q ss_pred             hhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCc
Q 044980          242 VLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFV  309 (313)
Q Consensus       242 ~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~  309 (313)
                      .+..++     +|+.|++++|.+.+.    +..+++|++|++++|.+.+.+|..+.++++|+.+++..+.+.
T Consensus       248 ~~~~l~-----~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          248 IFGGRA-----PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CTTCCC-----CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             HhcCCC-----CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            888888     999999999987766    778999999999999999999999999999999999987664

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=6.9e-34  Score=276.84  Aligned_cols=278  Identities=17%  Similarity=0.188  Sum_probs=195.6

Q ss_pred             cCCCHHhHHHHHHhhhhcccCCCCCCCCCCCC----CCC--ccc------------CceEecCCCCCEEEEecCC-----
Q 044980           14 VGCKESERGALLKLKRNLKDLSNCLASWNIGD----GDC--CKW------------VGNFCNNLTGHILELNLEN-----   70 (313)
Q Consensus        14 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~----~~~--c~~------------~~v~c~~~~~~v~~l~l~~-----   70 (313)
                      +.+..+|++||++||+++.+|     +|+..+    .++  |.|            .||.|+. .++|+.+++++     
T Consensus       264 ~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G  337 (876)
T 4ecn_A          264 TAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKG  337 (876)
T ss_dssp             CCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEE
T ss_pred             cccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCC
Confidence            334577999999999999877     565422    355  999            9999975 68999999987     


Q ss_pred             -------CCCCcceecC-CCCccccc------------------------------------------------------
Q 044980           71 -------PFGYLKYSDA-EDDDHYMR------------------------------------------------------   88 (313)
Q Consensus        71 -------~l~~L~~L~l-~~n~~~~~------------------------------------------------------   88 (313)
                             ++++|+.|++ ++|.+.|.                                                      
T Consensus       338 ~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i  417 (876)
T 4ecn_A          338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI  417 (876)
T ss_dssp             EECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCC
T ss_pred             cCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccc
Confidence                   6777888888 55544333                                                      


Q ss_pred             ----------------------ccccccCCCCCcEeeccCCCCCCCC--------------CCch-hhc--cCCCCCEEE
Q 044980           89 ----------------------SKLVVGNLSNLQYLDLSWIDCRLHV--------------DSLS-WLS--SLLLLEHID  129 (313)
Q Consensus        89 ----------------------~~~~l~~l~~L~~L~L~~n~~~~~~--------------~~~~-~~~--~l~~L~~L~  129 (313)
                                            +|..++++++|++|+|++|.+....              +.+| .+.  ++++|++|+
T Consensus       418 ~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~  497 (876)
T 4ecn_A          418 KKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE  497 (876)
T ss_dssp             CCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred             ccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE
Confidence                                  6667777778888888877752200              0134 444  777788888


Q ss_pred             cCCccCCCCCchhhhhcCccCeeeccCcc-cCc-CCCCCCC-------CCCCCCEEEccCCCCCCCCch--hhhcCcccc
Q 044980          130 LGQVHLGKASDCWIYSLRHLFFIVLSYNQ-FQG-KIPSTLG-------NLTSLKQIDLSHNQFNFTSPG--WLSKLNELS  198 (313)
Q Consensus       130 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-~~~-~~~~~~~-------~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~  198 (313)
                      +++|.+.+.+|..+..+++|++|++++|+ +++ .+|..+.       .+++|++|++++|.++ .+|.  .++.+++|+
T Consensus       498 Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~  576 (876)
T 4ecn_A          498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLG  576 (876)
T ss_dssp             EESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCC
T ss_pred             CcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCC
Confidence            88877777777777777788888888876 776 5665433       3447888888888777 6776  777777888


Q ss_pred             cccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccC-ccEEEccccccccc---ccCC--C
Q 044980          199 SFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYA-LVSLILSHCQISAA---LGKL--S  272 (313)
Q Consensus       199 ~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~-L~~L~Ls~n~l~~~---~~~~--~  272 (313)
                      .  |++++|  .+. .+| .++.+++|+.|++++|.+. .+|..+..++     + |+.|++++|.++..   +...  +
T Consensus       577 ~--L~Ls~N--~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~-----~~L~~L~Ls~N~L~~lp~~~~~~~~~  644 (876)
T 4ecn_A          577 L--LDCVHN--KVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFT-----DQVEGLGFSHNKLKYIPNIFNAKSVY  644 (876)
T ss_dssp             E--EECTTS--CCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEEC-----TTCCEEECCSSCCCSCCSCCCTTCSS
T ss_pred             E--EECCCC--Ccc-cch-hhcCCCcceEEECcCCccc-cchHHHhhcc-----ccCCEEECcCCCCCcCchhhhccccC
Confidence            7  777777  444 566 6777777888888888777 6666666666     6 88888888877643   3333  3


Q ss_pred             CCCEEEccCCccccccCccc---c--CCCCCCEeeCCCCcCcc
Q 044980          273 SLRNLDFSLNMLNGSIPLSL---G--QISHLEYLDLSNNKFVT  310 (313)
Q Consensus       273 ~L~~L~l~~n~l~~~ip~~l---~--~l~~L~~L~l~~n~l~~  310 (313)
                      +|+.|++++|++.+.+|...   .  ..++|+.|++++|+++.
T Consensus       645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~  687 (876)
T 4ecn_A          645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK  687 (876)
T ss_dssp             CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCS
T ss_pred             CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCc
Confidence            37788888888776555322   2  23477788888887763

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=7e-32  Score=262.42  Aligned_cols=230  Identities=27%  Similarity=0.274  Sum_probs=177.2

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCcc
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHL  149 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  149 (313)
                      .+++|+.|++++|.+.+.+|..+++++.|++|++++|.+   .+.+| .+..+++|++|++++|.+++..|..+..+++|
T Consensus       416 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l---~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  492 (768)
T 3rgz_A          416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML---EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL  492 (768)
T ss_dssp             GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC---CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred             cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcc---cCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCC
Confidence            456677777777777777777777777777777777764   33343 56677777777777777777777777777777


Q ss_pred             CeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccc---------------
Q 044980          150 FFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQL---------------  214 (313)
Q Consensus       150 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~---------------  214 (313)
                      ++|++++|++++.+|..+..+++|++|++++|.+++.+|..+..+++|+.  +++++|  .+.+.               
T Consensus       493 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~--L~Ls~N--~l~g~ip~~~~~~~~~~~~~  568 (768)
T 3rgz_A          493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW--LDLNTN--LFNGTIPAAMFKQSGKIAAN  568 (768)
T ss_dssp             CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCE--EECCSS--EEESBCCGGGGTTTTCBCCS
T ss_pred             CEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCE--EECCCC--ccCCcCChHHhcccchhhhh
Confidence            77777777777777777777777777777777777777777777777777  777666  22222               


Q ss_pred             -------------------------------------------------------cccccccCCCcCEEEccCCCCCCCc
Q 044980          215 -------------------------------------------------------IPTSFIRLCKLTSIDFSSVKLSQDI  239 (313)
Q Consensus       215 -------------------------------------------------------~~~~~~~~~~L~~L~l~~n~l~~~~  239 (313)
                                                                             +|..++.+++|+.|++++|.++|.+
T Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i  648 (768)
T 3rgz_A          569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI  648 (768)
T ss_dssp             TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred             ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence                                                                   3334555677888999999999888


Q ss_pred             chhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCcccc
Q 044980          240 SQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTKK  312 (313)
Q Consensus       240 ~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~~~  312 (313)
                      |..++.++     .|+.|+|++|+++|.    ++.+++|+.|||++|+++|.+|..+..++.|++|++++|+++|.|
T Consensus       649 p~~l~~l~-----~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~i  720 (768)
T 3rgz_A          649 PKEIGSMP-----YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI  720 (768)
T ss_dssp             CGGGGGCT-----TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEEC
T ss_pred             CHHHhccc-----cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccC
Confidence            88888888     899999999998876    788899999999999999999999999999999999999998865

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=2.4e-31  Score=232.31  Aligned_cols=225  Identities=22%  Similarity=0.314  Sum_probs=205.6

Q ss_pred             CCCCcceecCCC-CcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCc
Q 044980           71 PFGYLKYSDAED-DDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRH  148 (313)
Q Consensus        71 ~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  148 (313)
                      ++++|+.|++++ |.+.+.+|..++++++|++|++++|.+   .+.+| .+.++++|++|++++|.+.+..|..+..+++
T Consensus        74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l---~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  150 (313)
T 1ogq_A           74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV---SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN  150 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECC---EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred             CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCee---CCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence            789999999995 999999999999999999999999996   33444 6889999999999999999989999999999


Q ss_pred             cCeeeccCcccCcCCCCCCCCCC-CCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCE
Q 044980          149 LFFIVLSYNQFQGKIPSTLGNLT-SLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTS  227 (313)
Q Consensus       149 L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~  227 (313)
                      |++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..+. |+.  |++++|  .+.+..|..+..+++|+.
T Consensus       151 L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~--L~Ls~N--~l~~~~~~~~~~l~~L~~  225 (313)
T 1ogq_A          151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAF--VDLSRN--MLEGDASVLFGSDKNTQK  225 (313)
T ss_dssp             CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSE--EECCSS--EEEECCGGGCCTTSCCSE
T ss_pred             CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccE--EECcCC--cccCcCCHHHhcCCCCCE
Confidence            99999999999999999999998 999999999999999999999987 999  999999  777788999999999999


Q ss_pred             EEccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeC
Q 044980          228 IDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDL  303 (313)
Q Consensus       228 L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l  303 (313)
                      |++++|.+.+.+|. +..++     +|+.|++++|.+++.    +..+++|++|++++|+++|.+|.. ..+++|+.+++
T Consensus       226 L~L~~N~l~~~~~~-~~~l~-----~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l  298 (313)
T 1ogq_A          226 IHLAKNSLAFDLGK-VGLSK-----NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAY  298 (313)
T ss_dssp             EECCSSEECCBGGG-CCCCT-----TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGT
T ss_pred             EECCCCceeeecCc-ccccC-----CCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHh
Confidence            99999999987665 55566     999999999999865    788999999999999999999986 88999999999


Q ss_pred             CCCc-Ccc
Q 044980          304 SNNK-FVT  310 (313)
Q Consensus       304 ~~n~-l~~  310 (313)
                      ++|+ +.|
T Consensus       299 ~~N~~lc~  306 (313)
T 1ogq_A          299 ANNKCLCG  306 (313)
T ss_dssp             CSSSEEES
T ss_pred             cCCCCccC
Confidence            9997 555

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=3.7e-30  Score=223.93  Aligned_cols=252  Identities=22%  Similarity=0.233  Sum_probs=211.5

Q ss_pred             CCcccCceEecCCCCCEEEEecCCCCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCC
Q 044980           47 DCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLE  126 (313)
Q Consensus        47 ~~c~~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~  126 (313)
                      ..|.|.++.|...  .++.+.. +-.++|+.|++++|.+....+..+.++++|++|++++|.+.........+..+++|+
T Consensus         5 C~C~~~~l~c~~~--~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~   81 (306)
T 2z66_A            5 CSCSGTEIRCNSK--GLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK   81 (306)
T ss_dssp             CEEETTEEECCSS--CCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCC
T ss_pred             CeeCCCEEEcCCC--CcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccC
Confidence            4489999999642  2333322 134689999999999985444457899999999999999622111124677899999


Q ss_pred             EEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCC-CCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccc
Q 044980          127 HIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIP-STLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLV  205 (313)
Q Consensus       127 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~  205 (313)
                      +|++++|.+.. +|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++  |+++
T Consensus        82 ~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~--L~l~  158 (306)
T 2z66_A           82 YLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV--LKMA  158 (306)
T ss_dssp             EEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE--EECT
T ss_pred             EEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE--EECC
Confidence            99999999875 45558889999999999999985544 57889999999999999999888888999999999  9999


Q ss_pred             cccccccc-ccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEcc
Q 044980          206 SCMVRFHQ-LIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFS  280 (313)
Q Consensus       206 ~n~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~  280 (313)
                      +|  .+.+ .+|..+..+++|++|++++|.+.+..|..+..++     +|+.|++++|.+++.    +..+++|++|+++
T Consensus       159 ~n--~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  231 (306)
T 2z66_A          159 GN--SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-----SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS  231 (306)
T ss_dssp             TC--EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT-----TCCEEECTTSCCSBCCSGGGTTCTTCCEEECT
T ss_pred             CC--ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC-----CCCEEECCCCccCccChhhccCcccCCEeECC
Confidence            98  5655 5788899999999999999999988788888888     999999999999875    7788999999999


Q ss_pred             CCccccccCccccCCC-CCCEeeCCCCcCccc
Q 044980          281 LNMLNGSIPLSLGQIS-HLEYLDLSNNKFVTK  311 (313)
Q Consensus       281 ~n~l~~~ip~~l~~l~-~L~~L~l~~n~l~~~  311 (313)
                      +|.+.+..|..+..++ +|++|++++|.++++
T Consensus       232 ~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          232 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             TSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             CCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            9999999999999985 999999999999875

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.97  E-value=3.1e-29  Score=229.75  Aligned_cols=117  Identities=21%  Similarity=0.222  Sum_probs=73.3

Q ss_pred             CchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEcccccccc
Q 044980          187 SPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA  266 (313)
Q Consensus       187 ~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~  266 (313)
                      .|..+..+++|++  |++++|  .+.+..|..++.+++|++|++++|.+.+..+..+..++     +|+.|++++|++++
T Consensus       291 ~~~~~~~l~~L~~--L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~  361 (455)
T 3v47_A          291 LKSVFSHFTDLEQ--LTLAQN--EINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD-----KLEVLDLSYNHIRA  361 (455)
T ss_dssp             CTTTTTTCTTCCE--EECTTS--CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT-----TCCEEECCSSCCCE
T ss_pred             chhhcccCCCCCE--EECCCC--cccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc-----cCCEEECCCCcccc
Confidence            3444455555555  555555  44455555666666666666666666655555555555     67777777777655


Q ss_pred             c----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCcccc
Q 044980          267 A----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTKK  312 (313)
Q Consensus       267 ~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~~~  312 (313)
                      .    +..+++|++|++++|++++..+..+..+++|++|++++|+++++.
T Consensus       362 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  411 (455)
T 3v47_A          362 LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  411 (455)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             cChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence            4    566677777777777777544445566777777777777776653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=4.5e-29  Score=221.48  Aligned_cols=255  Identities=22%  Similarity=0.254  Sum_probs=204.3

Q ss_pred             CCCCCCCCCcccCceEecCCCCCEEEEecCCCCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-h
Q 044980           40 SWNIGDGDCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-W  118 (313)
Q Consensus        40 ~w~~~~~~~c~~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~  118 (313)
                      .|.. ....|.|.++ |+-....++.+.-. -.++|+.|++++|.+++..+..+.++++|++|++++|.+   .+..+ .
T Consensus        22 ~~~~-~~~~C~~~~~-c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~   95 (353)
T 2z80_A           22 SSNQ-ASLSCDRNGI-CKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI---NTIEEDS   95 (353)
T ss_dssp             ------CCEECTTSE-EECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC---CEECTTT
T ss_pred             CCCc-cCCCCCCCeE-eeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc---CccCHhh
Confidence            4443 5667999887 76444455544321 346899999999999876666899999999999999986   22223 5


Q ss_pred             hccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCC--CCCCCCCCCEEEccCCC-CCCCCchhhhcCc
Q 044980          119 LSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPS--TLGNLTSLKQIDLSHNQ-FNFTSPGWLSKLN  195 (313)
Q Consensus       119 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~  195 (313)
                      +.++++|++|++++|.+++..+..+..+++|++|++++|+++ .+|.  .+..+++|++|++++|. +.+..+..+..++
T Consensus        96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  174 (353)
T 2z80_A           96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT  174 (353)
T ss_dssp             TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred             cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCC
Confidence            888999999999999999877767889999999999999998 4554  78889999999999995 6655667889999


Q ss_pred             ccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc--------
Q 044980          196 ELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--------  267 (313)
Q Consensus       196 ~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--------  267 (313)
                      +|++  +++++|  .+.+..|..++.+++|++|++++|.+.......+..++     +|+.|++++|.+++.        
T Consensus       175 ~L~~--L~l~~n--~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-----~L~~L~L~~n~l~~~~~~~l~~~  245 (353)
T 2z80_A          175 FLEE--LEIDAS--DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS-----SVECLELRDTDLDTFHFSELSTG  245 (353)
T ss_dssp             EEEE--EEEEET--TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTT-----TEEEEEEESCBCTTCCCC-----
T ss_pred             CCCE--EECCCC--CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcc-----cccEEECCCCccccccccccccc
Confidence            9999  999998  77777888999999999999999998654433444566     899999999887752        


Q ss_pred             ---------------------------ccCCCCCCEEEccCCccccccCcc-ccCCCCCCEeeCCCCcCccc
Q 044980          268 ---------------------------LGKLSSLRNLDFSLNMLNGSIPLS-LGQISHLEYLDLSNNKFVTK  311 (313)
Q Consensus       268 ---------------------------~~~~~~L~~L~l~~n~l~~~ip~~-l~~l~~L~~L~l~~n~l~~~  311 (313)
                                                 +..+++|++|++++|+++ .+|.. +..+++|++|++++|+++++
T Consensus       246 ~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             -CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence                                       456789999999999999 77776 48899999999999999875

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.96  E-value=6.9e-28  Score=222.18  Aligned_cols=227  Identities=22%  Similarity=0.198  Sum_probs=183.1

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch--hhccCCCCCEEEcCCccCCCCCchhhhhcCc
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS--WLSSLLLLEHIDLGQVHLGKASDCWIYSLRH  148 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  148 (313)
                      ++++|+.|++++|.+.+..|.+|.++++|++|+|++|.+    ..++  .+.++++|++|++++|.+.+..+..+..+++
T Consensus        54 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  129 (477)
T 2id5_A           54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL----KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN  129 (477)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC----CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC----CccCcccccCCCCCCEEECCCCccccCChhHcccccc
Confidence            678899999999999888888899999999999999986    2233  4778899999999999998887878889999


Q ss_pred             cCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcC--
Q 044980          149 LFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLT--  226 (313)
Q Consensus       149 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~--  226 (313)
                      |++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.  |++.+|  .+....+..+..+++|+  
T Consensus       130 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~--L~l~~n--~i~~~~~~~~~~l~~L~~L  205 (477)
T 2id5_A          130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV--LRLRHL--NINAIRDYSFKRLYRLKVL  205 (477)
T ss_dssp             CCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCE--EEEESC--CCCEECTTCSCSCTTCCEE
T ss_pred             CCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcE--EeCCCC--cCcEeChhhcccCccccee
Confidence            999999999998877888899999999999999998776677888888888  888877  44444444555555444  


Q ss_pred             ----------------------EEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEcc
Q 044980          227 ----------------------SIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFS  280 (313)
Q Consensus       227 ----------------------~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~  280 (313)
                                            .|++++|.+.+..+..+..++     +|+.|++++|.+++.    +..+++|++|+++
T Consensus       206 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  280 (477)
T 2id5_A          206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV-----YLRFLNLSYNPISTIEGSMLHELLRLQEIQLV  280 (477)
T ss_dssp             EEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT-----TCCEEECCSSCCCEECTTSCTTCTTCCEEECC
T ss_pred             eCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc-----ccCeeECCCCcCCccChhhccccccCCEEECC
Confidence                                  455555555544334555566     888999998888765    7778889999999


Q ss_pred             CCccccccCccccCCCCCCEeeCCCCcCcc
Q 044980          281 LNMLNGSIPLSLGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       281 ~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~  310 (313)
                      +|++.+..|..+..+++|++|++++|++++
T Consensus       281 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  310 (477)
T 2id5_A          281 GGQLAVVEPYAFRGLNYLRVLNVSGNQLTT  310 (477)
T ss_dssp             SSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred             CCccceECHHHhcCcccCCEEECCCCcCce
Confidence            999998778888999999999999998875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=9.2e-28  Score=215.81  Aligned_cols=225  Identities=20%  Similarity=0.193  Sum_probs=155.9

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCcc
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHL  149 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  149 (313)
                      .+++|+.|++++|.+.+..+..+.++++|++|++++|.+   ....+ .+.++++|++|++++|.++...+..+..+++|
T Consensus        67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L  143 (390)
T 3o6n_A           67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI---RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL  143 (390)
T ss_dssp             HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCC---CcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCC
Confidence            467888888888888776666788888888888888885   23333 46788888888888888886655556788888


Q ss_pred             CeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcC----------------c------------------
Q 044980          150 FFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKL----------------N------------------  195 (313)
Q Consensus       150 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l----------------~------------------  195 (313)
                      ++|++++|.+++..+..+..+++|++|++++|.+++.....+..+                .                  
T Consensus       144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~  223 (390)
T 3o6n_A          144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP  223 (390)
T ss_dssp             CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC
T ss_pred             cEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccc
Confidence            888888888887667778888888888888888775422222111                1                  


Q ss_pred             ---ccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc---cc
Q 044980          196 ---ELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA---LG  269 (313)
Q Consensus       196 ---~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~---~~  269 (313)
                         +|+.  |++++|  .+..  +..+..+++|++|++++|.+.+..|..+..++     +|+.|++++|++++.   +.
T Consensus       224 ~~~~L~~--L~l~~n--~l~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~  292 (390)
T 3o6n_A          224 VNVELTI--LKLQHN--NLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ-----RLERLYISNNRLVALNLYGQ  292 (390)
T ss_dssp             CCSSCCE--EECCSS--CCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCS-----SCCEEECCSSCCCEEECSSS
T ss_pred             ccccccE--EECCCC--CCcc--cHHHcCCCCccEEECCCCcCCCcChhHccccc-----cCCEEECCCCcCcccCcccC
Confidence               1222  222222  1111  13456677777777777777776677777666     777777777777665   44


Q ss_pred             CCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCcc
Q 044980          270 KLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       270 ~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~  310 (313)
                      .+++|++|++++|++. .+|..+..+++|++|++++|++++
T Consensus       293 ~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~  332 (390)
T 3o6n_A          293 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT  332 (390)
T ss_dssp             CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred             CCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce
Confidence            5677777777777777 566666666777777777776654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=1.2e-27  Score=226.48  Aligned_cols=224  Identities=19%  Similarity=0.171  Sum_probs=168.0

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCcc
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHL  149 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  149 (313)
                      .+++|+.|++++|.+.+..|..|+++++|++|+|++|.+   .+..+ .+.++++|++|++++|.+++..+..+..+++|
T Consensus        73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L  149 (597)
T 3oja_B           73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI---RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL  149 (597)
T ss_dssp             HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcC---CCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCC
Confidence            478899999999998887777888999999999999886   33333 57888999999999999887766667888899


Q ss_pred             CeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccc----------------------------
Q 044980          150 FFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFL----------------------------  201 (313)
Q Consensus       150 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~----------------------------  201 (313)
                      ++|++++|.+++..|..+..+++|++|++++|.+++..+.   .+++|+.+.                            
T Consensus       150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~  226 (597)
T 3oja_B          150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS---LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV  226 (597)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGG---GCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEE
T ss_pred             CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChh---hhhhhhhhhcccCccccccCCchhheeeccCCccccc
Confidence            9999999999877777888889999999999988754322   223332200                            


Q ss_pred             ----------ccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc---c
Q 044980          202 ----------LNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA---L  268 (313)
Q Consensus       202 ----------L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~---~  268 (313)
                                |++++|  .+.+  +..+..+++|+.|++++|.+.+..|..+..++     +|+.|+|++|.+++.   +
T Consensus       227 ~~~~~~~L~~L~L~~n--~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~l~~~~  297 (597)
T 3oja_B          227 RGPVNVELTILKLQHN--NLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ-----RLERLYISNNRLVALNLYG  297 (597)
T ss_dssp             ECSCCSCCCEEECCSS--CCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCS-----SCCEEECTTSCCCEEECSS
T ss_pred             ccccCCCCCEEECCCC--CCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCcc-----CCCEEECCCCCCCCCCccc
Confidence                      233333  2221  34567778888888888888877777777777     888888888887766   5


Q ss_pred             cCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCcc
Q 044980          269 GKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       269 ~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~  310 (313)
                      ..+++|+.|+|++|.+. .+|..+..+++|++|++++|.+++
T Consensus       298 ~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~  338 (597)
T 3oja_B          298 QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT  338 (597)
T ss_dssp             SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred             ccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC
Confidence            55778888888888887 677777777777777777777754

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.95  E-value=1e-27  Score=219.59  Aligned_cols=230  Identities=20%  Similarity=0.238  Sum_probs=166.4

Q ss_pred             CCCCcceecCCCCccccccc-ccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchh--hhhc
Q 044980           71 PFGYLKYSDAEDDDHYMRSK-LVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCW--IYSL  146 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l  146 (313)
                      ++++|+.|++++|.+.+.++ ..|.++++|++|++++|.+   ....| .+.++++|++|++++|.+++..+..  +..+
T Consensus        52 ~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l  128 (455)
T 3v47_A           52 RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF---LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL  128 (455)
T ss_dssp             SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT---CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTC
T ss_pred             cCccccEEECcCCcccceECcccccccccCCEEeCCCCcc---CccChhhccCcccCCEEeCCCCCCCccccCcccccCc
Confidence            56778888888887765553 4577788888888888775   22223 5777888888888888887654443  6777


Q ss_pred             CccCeeeccCcccCcCCCCC-CCCCCCCCEEEccCCCCCCCCchhhhcC-------------------------------
Q 044980          147 RHLFFIVLSYNQFQGKIPST-LGNLTSLKQIDLSHNQFNFTSPGWLSKL-------------------------------  194 (313)
Q Consensus       147 ~~L~~L~L~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~p~~~~~l-------------------------------  194 (313)
                      ++|++|++++|.+++..|.. +..+++|++|++++|.+.+..|..+..+                               
T Consensus       129 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~  208 (455)
T 3v47_A          129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP  208 (455)
T ss_dssp             TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCT
T ss_pred             ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccc
Confidence            88888888888888666665 6778888888888888876666544433                               


Q ss_pred             ---ccccccccccccccc-------------------------------------------------------------c
Q 044980          195 ---NELSSFLLNLVSCMV-------------------------------------------------------------R  210 (313)
Q Consensus       195 ---~~L~~~~L~l~~n~~-------------------------------------------------------------~  210 (313)
                         ++|+.  |++++|..                                                             .
T Consensus       209 ~~~~~L~~--L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~  286 (455)
T 3v47_A          209 FKNTSITT--LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK  286 (455)
T ss_dssp             TTTCEEEE--EECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC
T ss_pred             cccceeee--EecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc
Confidence               34555  55544410                                                             2


Q ss_pred             cccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCcccc
Q 044980          211 FHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNG  286 (313)
Q Consensus       211 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~  286 (313)
                      +.+..|..++.+++|++|++++|.+.+..|..+..++     +|+.|++++|.+++.    +..+++|++|++++|++++
T Consensus       287 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  361 (455)
T 3v47_A          287 IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT-----HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA  361 (455)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-----TCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCE
T ss_pred             ccccchhhcccCCCCCEEECCCCcccccChhHhcCcc-----cCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccc
Confidence            2223456677777888888888888777676777776     888888888887655    6778888888888888887


Q ss_pred             ccCccccCCCCCCEeeCCCCcCcc
Q 044980          287 SIPLSLGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       287 ~ip~~l~~l~~L~~L~l~~n~l~~  310 (313)
                      ..|..+..+++|++|++++|++++
T Consensus       362 ~~~~~~~~l~~L~~L~L~~N~l~~  385 (455)
T 3v47_A          362 LGDQSFLGLPNLKELALDTNQLKS  385 (455)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             cChhhccccccccEEECCCCcccc
Confidence            778888888888888888888875

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=6.2e-27  Score=214.44  Aligned_cols=244  Identities=19%  Similarity=0.188  Sum_probs=204.3

Q ss_pred             cCceEecCCCCCEEEEecCCCCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEc
Q 044980           51 WVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDL  130 (313)
Q Consensus        51 ~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l  130 (313)
                      |..+.|....  ++.+.- +-.++++.|++++|.+.+..+..|.++++|++|+|++|.+.  ......+.++++|++|++
T Consensus        56 ~~~v~c~~~~--l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           56 FSKVVCTRRG--LSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR--QIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SCEEECCSSC--CSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEEC
T ss_pred             CcEEEECCCC--cCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC--CcChhhccCcccCCEEEC
Confidence            4678886422  222211 13368999999999999988889999999999999999962  111236889999999999


Q ss_pred             CCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCc-hhhhcCccccccccccccccc
Q 044980          131 GQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSP-GWLSKLNELSSFLLNLVSCMV  209 (313)
Q Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~~~L~l~~n~~  209 (313)
                      ++|.++...+..+..+++|++|++++|.++...+..+..+++|++|++++|...+.++ ..+..+++|+.  |++++|  
T Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~--L~L~~n--  206 (452)
T 3zyi_A          131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY--LNLGMC--  206 (452)
T ss_dssp             CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCE--EECTTS--
T ss_pred             CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCE--EECCCC--
Confidence            9999998877778899999999999999997666788999999999999965444444 46889999999  999998  


Q ss_pred             ccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccc
Q 044980          210 RFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLN  285 (313)
Q Consensus       210 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~  285 (313)
                      .+.. +| .+..+++|+.|++++|.+.+..|..+..++     +|+.|++++|++++.    +..+++|+.|+|++|+++
T Consensus       207 ~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  279 (452)
T 3zyi_A          207 NIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLS-----SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS  279 (452)
T ss_dssp             CCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCT-----TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             cccc-cc-cccccccccEEECcCCcCcccCcccccCcc-----CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence            5554 34 578899999999999999998888898888     999999999999876    788999999999999999


Q ss_pred             cccCccccCCCCCCEeeCCCCcCcc
Q 044980          286 GSIPLSLGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       286 ~~ip~~l~~l~~L~~L~l~~n~l~~  310 (313)
                      +..+..+..+++|++|++++|.+..
T Consensus       280 ~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          280 SLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             CCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             ccChHHhccccCCCEEEccCCCcCC
Confidence            7666778889999999999998764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.95  E-value=1.1e-26  Score=220.16  Aligned_cols=227  Identities=21%  Similarity=0.159  Sum_probs=124.8

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCch-hhhhcCc
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDC-WIYSLRH  148 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~  148 (313)
                      .+++|+.|++++|.++ .+|..+.++++|++|++++|.+   ....+ .+..+++|++|++++|.+.+.++. .+..+++
T Consensus       276 ~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~  351 (606)
T 3t6q_A          276 CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKF---ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN  351 (606)
T ss_dssp             TCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCC---SBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred             cccCCCEEeccCCccC-CCChhhcccccCCEEECccCCc---CcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence            4566777777777766 4666667777777777777764   22222 455566666666666665543333 3555566


Q ss_pred             cCeeeccCcccCcCC--CCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccccccccccccc-ccccCCCc
Q 044980          149 LFFIVLSYNQFQGKI--PSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPT-SFIRLCKL  225 (313)
Q Consensus       149 L~~L~L~~n~~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~-~~~~~~~L  225 (313)
                      |++|++++|.+++..  +..+..+++|++|++++|.+.+..|..+..+++|+.  +++++|  .+.+..+. .+..+++|
T Consensus       352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~--L~l~~n--~l~~~~~~~~~~~l~~L  427 (606)
T 3t6q_A          352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL--LDLAFT--RLKVKDAQSPFQNLHLL  427 (606)
T ss_dssp             CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSE--EECTTC--CEECCTTCCTTTTCTTC
T ss_pred             CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCe--EECCCC--cCCCcccchhhhCcccC
Confidence            666666666655433  445555666666666666655555555555555665  555555  33333332 24555555


Q ss_pred             CEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc-------ccCCCCCCEEEccCCccccccCccccCCCCC
Q 044980          226 TSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA-------LGKLSSLRNLDFSLNMLNGSIPLSLGQISHL  298 (313)
Q Consensus       226 ~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~-------~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L  298 (313)
                      ++|++++|.+.+..|..+..++     +|+.|++++|.+++.       +..+++|++|++++|.+++..|..+..+++|
T Consensus       428 ~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  502 (606)
T 3t6q_A          428 KVLNLSHSLLDISSEQLFDGLP-----ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM  502 (606)
T ss_dssp             CEEECTTCCCBTTCTTTTTTCT-----TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CEEECCCCccCCcCHHHHhCCC-----CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC
Confidence            5555555555555454444444     555555555554431       3444555555555555554444445555555


Q ss_pred             CEeeCCCCcCcc
Q 044980          299 EYLDLSNNKFVT  310 (313)
Q Consensus       299 ~~L~l~~n~l~~  310 (313)
                      ++|++++|++++
T Consensus       503 ~~L~Ls~N~l~~  514 (606)
T 3t6q_A          503 NHVDLSHNRLTS  514 (606)
T ss_dssp             CEEECCSSCCCG
T ss_pred             CEEECCCCccCc
Confidence            555555555443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=5.2e-26  Score=199.81  Aligned_cols=244  Identities=16%  Similarity=0.145  Sum_probs=127.2

Q ss_pred             CCcccCceEecCCC---------CCEEEEecCC------------CCCCcceecCCCCcccccccccccCCCCCcEeecc
Q 044980           47 DCCKWVGNFCNNLT---------GHILELNLEN------------PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLS  105 (313)
Q Consensus        47 ~~c~~~~v~c~~~~---------~~v~~l~l~~------------~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~  105 (313)
                      ..|.|..+.|....         ..++.+++++            ++++|+.|++++|.+.+..|..+.++++|++|+++
T Consensus        29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            34788888886321         2333344433            34555555555555555445555555555555555


Q ss_pred             CCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccC--cCCCCCCCCCCCCCEEEccCCC
Q 044980          106 WIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQ--GKIPSTLGNLTSLKQIDLSHNQ  182 (313)
Q Consensus       106 ~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~--~~~~~~~~~l~~L~~L~l~~n~  182 (313)
                      +|.+.    .+| .+  .++|++|++++|.+.+..+..+..+++|++|++++|.+.  +..+..+..+++|++|++++|.
T Consensus       109 ~n~l~----~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  182 (330)
T 1xku_A          109 KNQLK----ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  182 (330)
T ss_dssp             SSCCS----BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             CCcCC----ccChhh--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence            55541    111 11  145555555555555544445555555555555555553  2344445555555555555555


Q ss_pred             CCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEcccc
Q 044980          183 FNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHC  262 (313)
Q Consensus       183 l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n  262 (313)
                      ++. +|..+.  ++|++  |++++|  .+.+..|..+..+++|+.|++++|.+.+..+..+..++     +|+.|++++|
T Consensus       183 l~~-l~~~~~--~~L~~--L~l~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~L~~N  250 (330)
T 1xku_A          183 ITT-IPQGLP--PSLTE--LHLDGN--KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP-----HLRELHLNNN  250 (330)
T ss_dssp             CCS-CCSSCC--TTCSE--EECTTS--CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST-----TCCEEECCSS
T ss_pred             ccc-CCcccc--ccCCE--EECCCC--cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC-----CCCEEECCCC
Confidence            542 332221  45555  555555  44444455555666666666666666554444455555     5666666666


Q ss_pred             ccccc---ccCCCCCCEEEccCCccccccCccccC------CCCCCEeeCCCCcC
Q 044980          263 QISAA---LGKLSSLRNLDFSLNMLNGSIPLSLGQ------ISHLEYLDLSNNKF  308 (313)
Q Consensus       263 ~l~~~---~~~~~~L~~L~l~~n~l~~~ip~~l~~------l~~L~~L~l~~n~l  308 (313)
                      .++..   +..+++|++|++++|++++..+..+..      .+.++.+++++|.+
T Consensus       251 ~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~  305 (330)
T 1xku_A          251 KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  305 (330)
T ss_dssp             CCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             cCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence            55543   445556666666666665333333322      24555666666655

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.95  E-value=5e-28  Score=230.51  Aligned_cols=275  Identities=18%  Similarity=0.151  Sum_probs=219.8

Q ss_pred             HHhHHHHHHhhhhcccCCCCCCCCCCCCC---CCcccCce-EecCC--CCCEEEEecCCCCCCcceecCCCCcccccccc
Q 044980           18 ESERGALLKLKRNLKDLSNCLASWNIGDG---DCCKWVGN-FCNNL--TGHILELNLENPFGYLKYSDAEDDDHYMRSKL   91 (313)
Q Consensus        18 ~~~~~~l~~~~~~~~~~~~~~~~w~~~~~---~~c~~~~v-~c~~~--~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~   91 (313)
                      +.+......++.-...-.  -..|...+.   ..+.|..- .|..-  ...|+.-   .. .+++.|+++++.+.|.+|+
T Consensus        26 ~~~~~d~~aL~~~~~~~~--~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~---~~-~~V~~L~L~~~~l~g~lp~   99 (636)
T 4eco_A           26 AEYIKDYLALKEIWDALN--GKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLN---SN-GRVTGLSLEGFGASGRVPD   99 (636)
T ss_dssp             CHHHHHHHHHHHHHHHTT--GGGCCCCC------CCCCCSSCGGGTTCCTTEEEC---TT-CCEEEEECTTSCCEEEECG
T ss_pred             hhHHHHHHHHHHHHHHcC--CCCcccCCcCCccCCCCCCCCCcccccCCCCeEEc---CC-CCEEEEEecCcccCCcCCh
Confidence            334444445544433332  257875221   12478632 22111  1234432   12 6899999999999999999


Q ss_pred             cccCCCCCcEeeccCCCCC-------------------------------------------------------------
Q 044980           92 VVGNLSNLQYLDLSWIDCR-------------------------------------------------------------  110 (313)
Q Consensus        92 ~l~~l~~L~~L~L~~n~~~-------------------------------------------------------------  110 (313)
                      +++++++|++|+|++|.+.                                                             
T Consensus       100 ~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  179 (636)
T 4eco_A          100 AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS  179 (636)
T ss_dssp             GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCC
T ss_pred             HHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccc
Confidence            9999999999999999530                                                             


Q ss_pred             --------------CCCCCch-hhccCCCCCEEEcCCccCCCC-----------------Cchhhh--hcCccCeeeccC
Q 044980          111 --------------LHVDSLS-WLSSLLLLEHIDLGQVHLGKA-----------------SDCWIY--SLRHLFFIVLSY  156 (313)
Q Consensus       111 --------------~~~~~~~-~~~~l~~L~~L~l~~n~l~~~-----------------~~~~~~--~l~~L~~L~L~~  156 (313)
                                    ...+ +| .+.++++|++|++++|.+++.                 +|..+.  .+++|++|++++
T Consensus       180 ~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~  258 (636)
T 4eco_A          180 RITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN  258 (636)
T ss_dssp             CCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEEC
T ss_pred             ccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecC
Confidence                          0112 44 588899999999999999985                 787777  999999999999


Q ss_pred             cccCcCCCCCCCCCCCCCEEEccCCC-CCC-CCchhhhcC------ccccccccccccccccccccccc--ccccCCCcC
Q 044980          157 NQFQGKIPSTLGNLTSLKQIDLSHNQ-FNF-TSPGWLSKL------NELSSFLLNLVSCMVRFHQLIPT--SFIRLCKLT  226 (313)
Q Consensus       157 n~~~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~p~~~~~l------~~L~~~~L~l~~n~~~~~~~~~~--~~~~~~~L~  226 (313)
                      |.+.+.+|..+.++++|++|++++|. +++ .+|..++.+      ++|++  |++++|  .+. .+|.  .++++++|+
T Consensus       259 n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~--L~L~~n--~l~-~ip~~~~l~~l~~L~  333 (636)
T 4eco_A          259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI--IYIGYN--NLK-TFPVETSLQKMKKLG  333 (636)
T ss_dssp             CTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE--EECCSS--CCS-SCCCHHHHTTCTTCC
T ss_pred             CcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCE--EECCCC--cCC-ccCchhhhccCCCCC
Confidence            99999999999999999999999998 888 899888886      99999  999998  666 6888  899999999


Q ss_pred             EEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc---ccCCCC-CCEEEccCCccccccCccccCCC--CCCE
Q 044980          227 SIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA---LGKLSS-LRNLDFSLNMLNGSIPLSLGQIS--HLEY  300 (313)
Q Consensus       227 ~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~~~-L~~L~l~~n~l~~~ip~~l~~l~--~L~~  300 (313)
                      +|++++|.+.|.+| .+..++     +|+.|++++|.++..   +..+++ |++|++++|.++ .+|..+...+  +|++
T Consensus       334 ~L~L~~N~l~g~ip-~~~~l~-----~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~  406 (636)
T 4eco_A          334 MLECLYNQLEGKLP-AFGSEI-----KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSA  406 (636)
T ss_dssp             EEECCSCCCEEECC-CCEEEE-----EESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEE
T ss_pred             EEeCcCCcCccchh-hhCCCC-----CCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCE
Confidence            99999999998888 777777     999999999998754   778888 999999999999 8999887755  8999


Q ss_pred             eeCCCCcCccc
Q 044980          301 LDLSNNKFVTK  311 (313)
Q Consensus       301 L~l~~n~l~~~  311 (313)
                      |++++|+++|.
T Consensus       407 L~Ls~N~l~~~  417 (636)
T 4eco_A          407 IDFSYNEIGSV  417 (636)
T ss_dssp             EECCSSCTTTT
T ss_pred             EECcCCcCCCc
Confidence            99999999874

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.95  E-value=5.9e-27  Score=215.93  Aligned_cols=229  Identities=21%  Similarity=0.158  Sum_probs=152.6

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCcc---------------
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVH---------------  134 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~---------------  134 (313)
                      ++++|+.|++++|.+....+..|.++++|++|+|++|.+.   ...+ .+.++++|++|++++|.               
T Consensus        78 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  154 (477)
T 2id5_A           78 NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV---ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL  154 (477)
T ss_dssp             TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTC
T ss_pred             CCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc---cCChhHccccccCCEEECCCCccceeChhhccCCCCC
Confidence            4556666666666665544444556666666666666541   1111 34444455555555544               


Q ss_pred             ---------CCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccc
Q 044980          135 ---------LGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLV  205 (313)
Q Consensus       135 ---------l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~  205 (313)
                               +++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|...+.+|.......+|+.  |+++
T Consensus       155 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~--L~l~  232 (477)
T 2id5_A          155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTS--LSIT  232 (477)
T ss_dssp             CEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSE--EEEE
T ss_pred             CEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccE--EECc
Confidence                     44444444444555555555555554444444555555555555555554444444444446666  6666


Q ss_pred             ccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccC
Q 044980          206 SCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSL  281 (313)
Q Consensus       206 ~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~  281 (313)
                      +|  .+....+..+..+++|+.|++++|.+.+..+..+..++     +|+.|++++|++++.    +..+++|+.|++++
T Consensus       233 ~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  305 (477)
T 2id5_A          233 HC--NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL-----RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG  305 (477)
T ss_dssp             SS--CCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT-----TCCEEECCSSCCSEECTTTBTTCTTCCEEECCS
T ss_pred             CC--cccccCHHHhcCccccCeeECCCCcCCccChhhccccc-----cCCEEECCCCccceECHHHhcCcccCCEEECCC
Confidence            66  45544446788999999999999999987777787777     999999999999876    78899999999999


Q ss_pred             CccccccCccccCCCCCCEeeCCCCcCccc
Q 044980          282 NMLNGSIPLSLGQISHLEYLDLSNNKFVTK  311 (313)
Q Consensus       282 n~l~~~ip~~l~~l~~L~~L~l~~n~l~~~  311 (313)
                      |++++..+..|..+++|++|++++|.++++
T Consensus       306 N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          306 NQLTTLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             SCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             CcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence            999966666788999999999999998764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.3e-26  Score=211.51  Aligned_cols=244  Identities=20%  Similarity=0.215  Sum_probs=204.2

Q ss_pred             cCceEecCCCCCEEEEecCCCCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEc
Q 044980           51 WVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDL  130 (313)
Q Consensus        51 ~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l  130 (313)
                      |..+.|....  ++.+.- +-.++++.|++++|.+.+..+..|.++++|++|+|++|.+  .......|.++++|++|++
T Consensus        45 ~~~v~c~~~~--l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           45 FSKVICVRKN--LREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI--RTIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             SCEEECCSCC--CSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCC--CEECGGGGTTCSSCCEEEC
T ss_pred             CCEEEeCCCC--cCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcC--CccChhhccCCccCCEEEC
Confidence            5577775422  222211 1346799999999999988888999999999999999996  2222236889999999999


Q ss_pred             CCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCC-chhhhcCccccccccccccccc
Q 044980          131 GQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTS-PGWLSKLNELSSFLLNLVSCMV  209 (313)
Q Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~~~L~l~~n~~  209 (313)
                      ++|.++...+..+..+++|++|++++|.++...+..|..+++|++|++++|...+.+ +..+.++++|+.  |++++|  
T Consensus       120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~--L~L~~n--  195 (440)
T 3zyj_A          120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY--LNLAMC--  195 (440)
T ss_dssp             CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCE--EECTTS--
T ss_pred             CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCe--ecCCCC--
Confidence            999999887778899999999999999999776778999999999999996644444 457889999999  999998  


Q ss_pred             ccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccc
Q 044980          210 RFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLN  285 (313)
Q Consensus       210 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~  285 (313)
                      .+.. +| .+..+++|+.|++++|.+.+..|..+..++     +|+.|++++|++++.    +..+++|+.|+|++|+++
T Consensus       196 ~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  268 (440)
T 3zyj_A          196 NLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLM-----HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT  268 (440)
T ss_dssp             CCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCT-----TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC
T ss_pred             cCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCc-----cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC
Confidence            5543 44 478899999999999999988888888888     999999999999876    788999999999999999


Q ss_pred             cccCccccCCCCCCEeeCCCCcCcc
Q 044980          286 GSIPLSLGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       286 ~~ip~~l~~l~~L~~L~l~~n~l~~  310 (313)
                      +..+..+..+++|+.|++++|.+..
T Consensus       269 ~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          269 LLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             CCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             ccChhHhccccCCCEEEcCCCCccC
Confidence            7666778899999999999998764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=2.3e-26  Score=197.93  Aligned_cols=202  Identities=19%  Similarity=0.138  Sum_probs=119.8

Q ss_pred             CCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCC-chhhccCCCCCEEEcCCcc-CCCCCchhhhhcCcc
Q 044980           72 FGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDS-LSWLSSLLLLEHIDLGQVH-LGKASDCWIYSLRHL  149 (313)
Q Consensus        72 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L  149 (313)
                      .++|+.|++++|.+.+..+..+.++++|++|++++|.+   ... ...+.++++|++|++++|. +....+..+..+++|
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L  107 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL---ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL  107 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC---CEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcc---ceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCC
Confidence            35666677777766665555566666777777766664   111 1245666666677776665 555545556666666


Q ss_pred             CeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEE
Q 044980          150 FFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSID  229 (313)
Q Consensus       150 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~  229 (313)
                      ++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++  |++++|  .+....+..+..+++|+.|+
T Consensus       108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~--L~l~~n--~l~~~~~~~~~~l~~L~~L~  183 (285)
T 1ozn_A          108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH--LFLHGN--RISSVPERAFRGLHSLDRLL  183 (285)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE--EECCSS--CCCEECTTTTTTCTTCCEEE
T ss_pred             CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccE--EECCCC--cccccCHHHhcCccccCEEE
Confidence            66666666666555566666666666666666666544445556666666  666655  44444444455556666666


Q ss_pred             ccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccc
Q 044980          230 FSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLN  285 (313)
Q Consensus       230 l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~  285 (313)
                      +++|.+.+..|..+..++     +|+.|++++|.+++.    +..+++|++|++++|.+.
T Consensus       184 l~~n~l~~~~~~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          184 LHQNRVAHVHPHAFRDLG-----RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CCSSCCCEECTTTTTTCT-----TCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             CCCCcccccCHhHccCcc-----cccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            666666555555555544     555555555555544    444555555555555554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.94  E-value=2e-26  Score=218.37  Aligned_cols=227  Identities=21%  Similarity=0.262  Sum_probs=134.1

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch--hhccCCCCCEEEcCCccCCCCC--chhhhhc
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS--WLSSLLLLEHIDLGQVHLGKAS--DCWIYSL  146 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l  146 (313)
                      .+++|+.|++++|.+.+..|..+.+++.|++|++++|.+   .+.++  .+.++++|++|++++|.+.+..  +..+..+
T Consensus       299 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~---~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l  375 (606)
T 3t6q_A          299 GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK---RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL  375 (606)
T ss_dssp             SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS---CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTC
T ss_pred             ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc---ccccchhhhhccCcCCEEECCCCccccccCcchhcccC
Confidence            567788888888887776666777777777777777764   22222  3556666666666666665543  3445566


Q ss_pred             CccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCch-hhhcCcccccccccccccccccccccccccccCCCc
Q 044980          147 RHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPG-WLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKL  225 (313)
Q Consensus       147 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L  225 (313)
                      ++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|. .+..+++|+.  |++++|  .+....|..++.+++|
T Consensus       376 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~--L~l~~n--~l~~~~~~~~~~l~~L  451 (606)
T 3t6q_A          376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV--LNLSHS--LLDISSEQLFDGLPAL  451 (606)
T ss_dssp             TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCE--EECTTC--CCBTTCTTTTTTCTTC
T ss_pred             CCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCE--EECCCC--ccCCcCHHHHhCCCCC
Confidence            6666666666666655555666666666666666665544332 2555666666  666555  4444455555555666


Q ss_pred             CEEEccCCCCCCCc---chhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCC
Q 044980          226 TSIDFSSVKLSQDI---SQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHL  298 (313)
Q Consensus       226 ~~L~l~~n~l~~~~---~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L  298 (313)
                      ++|++++|.+.+..   +..+..++     +|+.|++++|.+++.    +..+++|++|++++|++++..|..+..+++|
T Consensus       452 ~~L~L~~n~l~~~~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  526 (606)
T 3t6q_A          452 QHLNLQGNHFPKGNIQKTNSLQTLG-----RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI  526 (606)
T ss_dssp             CEEECTTCBCGGGEECSSCGGGGCT-----TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred             CEEECCCCCCCccccccchhhccCC-----CccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc
Confidence            66666666555421   12344444     555666665555443    4455555555555555555555555555555


Q ss_pred             CEeeCCCCcCcc
Q 044980          299 EYLDLSNNKFVT  310 (313)
Q Consensus       299 ~~L~l~~n~l~~  310 (313)
                       +|++++|++++
T Consensus       527 -~L~L~~N~l~~  537 (606)
T 3t6q_A          527 -YLNLASNHISI  537 (606)
T ss_dssp             -EEECCSSCCCC
T ss_pred             -EEECcCCcccc
Confidence             55555555554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.94  E-value=1e-25  Score=198.21  Aligned_cols=243  Identities=18%  Similarity=0.172  Sum_probs=120.4

Q ss_pred             CcccCceEecCCC---------CCEEEEecCC------------CCCCcceecCCCCcccccccccccCCCCCcEeeccC
Q 044980           48 CCKWVGNFCNNLT---------GHILELNLEN------------PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSW  106 (313)
Q Consensus        48 ~c~~~~v~c~~~~---------~~v~~l~l~~------------~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~  106 (313)
                      .|.|..+.|....         ..++.+++.+            ++++|+.|++++|.+++..|..+.++++|++|++++
T Consensus        32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            3788888886321         2334444433            345555555555555554455555555555555555


Q ss_pred             CCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccC--cCCCCCCCCCCCCCEEEccCCCC
Q 044980          107 IDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQ--GKIPSTLGNLTSLKQIDLSHNQF  183 (313)
Q Consensus       107 n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~--~~~~~~~~~l~~L~~L~l~~n~l  183 (313)
                      |.+.    .+| .+.  ++|++|++++|.+.+..+..+..+++|++|++++|.++  +..+..+..+ +|++|++++|.+
T Consensus       112 n~l~----~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l  184 (332)
T 2ft3_A          112 NHLV----EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL  184 (332)
T ss_dssp             SCCC----SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred             CcCC----ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence            5541    122 111  45555555555555444444555555555555555553  2333444333 444444444444


Q ss_pred             CCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccc
Q 044980          184 NFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQ  263 (313)
Q Consensus       184 ~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~  263 (313)
                      ++ +|..+.  ++|++  |++++|  .+....+..+..+++|+.|++++|.+.+..+..+..++     +|+.|++++|+
T Consensus       185 ~~-l~~~~~--~~L~~--L~l~~n--~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~L~~N~  252 (332)
T 2ft3_A          185 TG-IPKDLP--ETLNE--LHLDHN--KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP-----TLRELHLDNNK  252 (332)
T ss_dssp             SS-CCSSSC--SSCSC--CBCCSS--CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT-----TCCEEECCSSC
T ss_pred             Cc-cCcccc--CCCCE--EECCCC--cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC-----CCCEEECCCCc
Confidence            32 222211  34444  555554  44444445555555555556655555555444455554     55556665555


Q ss_pred             cccc---ccCCCCCCEEEccCCccccccCccccC------CCCCCEeeCCCCcCc
Q 044980          264 ISAA---LGKLSSLRNLDFSLNMLNGSIPLSLGQ------ISHLEYLDLSNNKFV  309 (313)
Q Consensus       264 l~~~---~~~~~~L~~L~l~~n~l~~~ip~~l~~------l~~L~~L~l~~n~l~  309 (313)
                      ++..   +..+++|++|++++|++++..+..+..      .+.|+.+++++|.+.
T Consensus       253 l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          253 LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             CCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             CeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence            5433   445555555666655555333333332      234555555555543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=2.2e-26  Score=202.03  Aligned_cols=201  Identities=20%  Similarity=0.238  Sum_probs=180.2

Q ss_pred             CCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCC
Q 044980           95 NLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSL  173 (313)
Q Consensus        95 ~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L  173 (313)
                      ....+++|++++|.+   . .+| .+.++++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|
T Consensus        79 ~~~~l~~L~L~~n~l---~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L  152 (328)
T 4fcg_A           79 TQPGRVALELRSVPL---P-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRL  152 (328)
T ss_dssp             TSTTCCEEEEESSCC---S-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTC
T ss_pred             cccceeEEEccCCCc---h-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCC
Confidence            357899999999996   2 444 5788999999999999999 67888999999999999999999 889999999999


Q ss_pred             CEEEccCCCCCCCCchhhhc---------CcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhh
Q 044980          174 KQIDLSHNQFNFTSPGWLSK---------LNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLD  244 (313)
Q Consensus       174 ~~L~l~~n~l~~~~p~~~~~---------l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~  244 (313)
                      ++|++++|.+.+.+|..+..         +++|++  |++++|  .+. .+|..++.+++|++|++++|.+.+ +|..+.
T Consensus       153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~--L~L~~n--~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~  226 (328)
T 4fcg_A          153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQS--LRLEWT--GIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIH  226 (328)
T ss_dssp             CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCE--EEEEEE--CCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGG
T ss_pred             CEEECCCCCCccccChhHhhccchhhhccCCCCCE--EECcCC--CcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhhc
Confidence            99999999998899887654         999999  999998  555 688899999999999999999996 556688


Q ss_pred             hhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCcccc
Q 044980          245 IFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTKK  312 (313)
Q Consensus       245 ~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~~~  312 (313)
                      .++     +|+.|++++|.+.+.    +..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.|.+
T Consensus       227 ~l~-----~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i  293 (328)
T 4fcg_A          227 HLP-----KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL  293 (328)
T ss_dssp             GCT-----TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred             cCC-----CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence            888     999999999998766    788999999999999999999999999999999999999998764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.94  E-value=4.6e-26  Score=200.17  Aligned_cols=221  Identities=20%  Similarity=0.193  Sum_probs=189.3

Q ss_pred             CCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980           72 FGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF  150 (313)
Q Consensus        72 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  150 (313)
                      .++++.|++++|.+++..+..+.++++|++|++++|.+   ....| .+.++++|++|++++|.++.. |..+  .++|+
T Consensus        51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~l-~~~~--~~~L~  124 (330)
T 1xku_A           51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI---SKISPGAFAPLVKLERLYLSKNQLKEL-PEKM--PKTLQ  124 (330)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC---CCBCTTTTTTCTTCCEEECCSSCCSBC-CSSC--CTTCC
T ss_pred             CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcC---CeeCHHHhcCCCCCCEEECCCCcCCcc-Chhh--ccccc
Confidence            36799999999999987777899999999999999996   23323 688999999999999998854 3322  26899


Q ss_pred             eeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCC--CCchhhhcCcccccccccccccccccccccccccccCCCcCEE
Q 044980          151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNF--TSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSI  228 (313)
Q Consensus       151 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L  228 (313)
                      +|++++|.+++..+..+..+++|++|++++|.+..  ..+..+..+++|++  +++++|  .+.. +|..+.  ++|++|
T Consensus       125 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~--L~l~~n--~l~~-l~~~~~--~~L~~L  197 (330)
T 1xku_A          125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY--IRIADT--NITT-IPQGLP--PSLTEL  197 (330)
T ss_dssp             EEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE--EECCSS--CCCS-CCSSCC--TTCSEE
T ss_pred             EEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCE--EECCCC--cccc-CCcccc--ccCCEE
Confidence            99999999997767778899999999999999863  66778999999999  999998  4443 555443  789999


Q ss_pred             EccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCC
Q 044980          229 DFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLS  304 (313)
Q Consensus       229 ~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~  304 (313)
                      ++++|.+.+..+..+..++     +|+.|++++|.+++.    +..+++|++|++++|.++ .+|..+..+++|++|+++
T Consensus       198 ~l~~n~l~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~  271 (330)
T 1xku_A          198 HLDGNKITKVDAASLKGLN-----NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLH  271 (330)
T ss_dssp             ECTTSCCCEECTGGGTTCT-----TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECC
T ss_pred             ECCCCcCCccCHHHhcCCC-----CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECC
Confidence            9999999988788888888     999999999998865    778899999999999999 899999999999999999


Q ss_pred             CCcCccc
Q 044980          305 NNKFVTK  311 (313)
Q Consensus       305 ~n~l~~~  311 (313)
                      +|++++.
T Consensus       272 ~N~i~~~  278 (330)
T 1xku_A          272 NNNISAI  278 (330)
T ss_dssp             SSCCCCC
T ss_pred             CCcCCcc
Confidence            9999863

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.94  E-value=1.1e-26  Score=217.58  Aligned_cols=181  Identities=20%  Similarity=0.214  Sum_probs=124.9

Q ss_pred             CcccCceEecCCCCCEEEEecCCCCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCC
Q 044980           48 CCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLE  126 (313)
Q Consensus        48 ~c~~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~  126 (313)
                      .|.|.++ |+.....++.+.-. -.++|+.|++++|.+++..|.+|.++++|++|++++|.+   .+..+ .+.++++|+
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i---~~~~~~~~~~l~~L~   77 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSG-LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI---NTIEGDAFYSLGSLE   77 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSC-CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCC---CEECTTTTTTCTTCC
T ss_pred             cCCCCce-EECCCCcccccccc-CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCc---CccChhhccccccCC
Confidence            4888888 76544344433321 235788888888888777777778888888888888875   22222 577778888


Q ss_pred             EEEcCCccCCCCCchhhhhcCccCeeeccCcccCc-CCCCCCCCCCCCCEEEccCCCCCCCCc-hhhhcCcccccccccc
Q 044980          127 HIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQG-KIPSTLGNLTSLKQIDLSHNQFNFTSP-GWLSKLNELSSFLLNL  204 (313)
Q Consensus       127 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~~~L~l  204 (313)
                      +|++++|.+++..+..+..+++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+| ..+..+++|++  |++
T Consensus        78 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~--L~L  155 (549)
T 2z81_A           78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE--LEI  155 (549)
T ss_dssp             EEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE--EEE
T ss_pred             EEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCe--eec
Confidence            88888888877777777788888888888888775 345667777888888888877444443 46777777777  777


Q ss_pred             cccccccccccccccc------------------------cCCCcCEEEccCCCCCC
Q 044980          205 VSCMVRFHQLIPTSFI------------------------RLCKLTSIDFSSVKLSQ  237 (313)
Q Consensus       205 ~~n~~~~~~~~~~~~~------------------------~~~~L~~L~l~~n~l~~  237 (313)
                      ++|  .+.+..|..++                        .+++|++|++++|.+.+
T Consensus       156 ~~n--~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          156 KAL--SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             EET--TCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred             cCC--cccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence            776  45544444443                        35677777777777765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.2e-25  Score=193.39  Aligned_cols=215  Identities=20%  Similarity=0.183  Sum_probs=163.3

Q ss_pred             CCcccccccccccCCCCCcEeeccCCCCCCCCCCc-hhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcc-c
Q 044980           82 DDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSL-SWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQ-F  159 (313)
Q Consensus        82 ~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-~  159 (313)
                      ++.+. .+|..+  .++|++|++++|.+   .... ..+..+++|++|++++|.+++..+..+..+++|++|++++|. +
T Consensus        20 ~~~l~-~ip~~~--~~~l~~L~l~~n~i---~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l   93 (285)
T 1ozn_A           20 QQGLQ-AVPVGI--PAASQRIFLHGNRI---SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL   93 (285)
T ss_dssp             SSCCS-SCCTTC--CTTCSEEECTTSCC---CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred             cCCcc-cCCcCC--CCCceEEEeeCCcC---CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence            34444 244433  36788888888886   1212 247778888888888888887767778888888888888887 6


Q ss_pred             CcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCc
Q 044980          160 QGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDI  239 (313)
Q Consensus       160 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  239 (313)
                      ....|..+..+++|++|++++|.+++..|..+..+++|++  |++++|  .+....+..++.+++|++|++++|.+.+..
T Consensus        94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~--L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  169 (285)
T 1ozn_A           94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY--LYLQDN--ALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (285)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE--EECCSS--CCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCE--EECCCC--cccccCHhHhccCCCccEEECCCCcccccC
Confidence            6555777888888888888888888777777888888888  888887  566656666788888888888888888665


Q ss_pred             chhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCccc
Q 044980          240 SQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTK  311 (313)
Q Consensus       240 ~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~~  311 (313)
                      +..+..++     +|+.|++++|.+++.    +..+++|+.|++++|.+++..+..+..+++|++|++++|+++++
T Consensus       170 ~~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  240 (285)
T 1ozn_A          170 ERAFRGLH-----SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (285)
T ss_dssp             TTTTTTCT-----TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             HHHhcCcc-----ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence            55677666     888888888887765    66778888888888888865555678888888888888887653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.94  E-value=4.9e-26  Score=211.98  Aligned_cols=223  Identities=18%  Similarity=0.182  Sum_probs=149.3

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCC-CCchhhhhcCcc
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGK-ASDCWIYSLRHL  149 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L  149 (313)
                      ++++|++|++++|.+++..|..|+++++|++|++++|.+    ..+|.. .+++|++|++++|.+++ ..|..+..+++|
T Consensus        43 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l----~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L  117 (520)
T 2z7x_B           43 SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL----VKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQL  117 (520)
T ss_dssp             TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC----CEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTC
T ss_pred             ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce----eecCcc-ccCCccEEeccCCccccccchhhhccCCcc
Confidence            678899999999998887788888899999999998886    245544 78888889998888876 456778888888


Q ss_pred             CeeeccCcccCcCCCCCCCCCCCC--CEEEccCCCC--CCCCchhhhcC--------------------------c----
Q 044980          150 FFIVLSYNQFQGKIPSTLGNLTSL--KQIDLSHNQF--NFTSPGWLSKL--------------------------N----  195 (313)
Q Consensus       150 ~~L~L~~n~~~~~~~~~~~~l~~L--~~L~l~~n~l--~~~~p~~~~~l--------------------------~----  195 (313)
                      ++|++++|.+++   ..+..+++|  ++|++++|.+  .+..|..+..+                          +    
T Consensus       118 ~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~  194 (520)
T 2z7x_B          118 KFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL  194 (520)
T ss_dssp             CEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEE
T ss_pred             eEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceee
Confidence            888888887764   233444444  5555555555  33333333221                          1    


Q ss_pred             -----------------------------------------------------cccccccccccccccccccccccc---
Q 044980          196 -----------------------------------------------------ELSSFLLNLVSCMVRFHQLIPTSF---  219 (313)
Q Consensus       196 -----------------------------------------------------~L~~~~L~l~~n~~~~~~~~~~~~---  219 (313)
                                                                           +|+.  +++++|  .+.+.+|..+   
T Consensus       195 L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~--L~l~~n--~l~~~~p~~~~~~  270 (520)
T 2z7x_B          195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY--FSISNV--KLQGQLDFRDFDY  270 (520)
T ss_dssp             CCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSE--EEEEEE--EEESCCCCCCCCC
T ss_pred             ccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccE--EEeecc--cccCccccchhhc
Confidence                                                                 2222  223332  2222222222   


Q ss_pred             --------------------------------------------------ccCCCcCEEEccCCCCCCCcchhhhhhccc
Q 044980          220 --------------------------------------------------IRLCKLTSIDFSSVKLSQDISQVLDIFSAY  249 (313)
Q Consensus       220 --------------------------------------------------~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~  249 (313)
                                                                        ..+++|++|++++|.+.+.+|..+..++  
T Consensus       271 ~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--  348 (520)
T 2z7x_B          271 SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLT--  348 (520)
T ss_dssp             CSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCS--
T ss_pred             ccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCC--
Confidence                                                              4566777777777777776666666666  


Q ss_pred             cccCccEEEccccccccc------ccCCCCCCEEEccCCccccccCcc-ccCCCCCCEeeCCCCcCcc
Q 044980          250 GTYALVSLILSHCQISAA------LGKLSSLRNLDFSLNMLNGSIPLS-LGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       250 ~~~~L~~L~Ls~n~l~~~------~~~~~~L~~L~l~~n~l~~~ip~~-l~~l~~L~~L~l~~n~l~~  310 (313)
                         +|+.|++++|++++.      +..+++|++|++++|.+.+.+|.. +..+++|++|++++|++++
T Consensus       349 ---~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~  413 (520)
T 2z7x_B          349 ---ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD  413 (520)
T ss_dssp             ---SCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred             ---CCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence               777777777777652      667777777777777777656653 5666777777777777754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.94  E-value=1.4e-25  Score=215.32  Aligned_cols=225  Identities=18%  Similarity=0.167  Sum_probs=135.5

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCcc
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHL  149 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  149 (313)
                      ++++|+.|++++|.+.+..|..++++++|++|++++|.+   ....+ .+.++++|++|++++|.+.+..+..+..+++|
T Consensus        47 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l---~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  123 (680)
T 1ziw_A           47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL---SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL  123 (680)
T ss_dssp             GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC---CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred             CCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc---CccChhhhccCCCCCEEECCCCccCccChhHccccCCC
Confidence            456677777777777666666666777777777777764   12122 36667777777777777766655566677777


Q ss_pred             CeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhh--cCcccccccccccccccccccccccccccC-----
Q 044980          150 FFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLS--KLNELSSFLLNLVSCMVRFHQLIPTSFIRL-----  222 (313)
Q Consensus       150 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~-----  222 (313)
                      ++|++++|.+++..|..+.++++|++|++++|.+++..+..+.  .+++|+.  +++++|  .+.+..|..+..+     
T Consensus       124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~--L~L~~n--~l~~~~~~~~~~l~~L~~  199 (680)
T 1ziw_A          124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK--LELSSN--QIKEFSPGCFHAIGRLFG  199 (680)
T ss_dssp             CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESE--EECTTC--CCCCBCTTGGGGSSEECE
T ss_pred             CEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccE--EECCCC--cccccChhhhhhhhhhhh
Confidence            7777777777766666666777777777777777665555443  3466666  666666  4444444433332     


Q ss_pred             ----------------------CCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCE
Q 044980          223 ----------------------CKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRN  276 (313)
Q Consensus       223 ----------------------~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~  276 (313)
                                            ++|+.|++++|.+.+..|..+..+.   .++|+.|++++|.+++.    +..+++|++
T Consensus       200 L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  276 (680)
T 1ziw_A          200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK---WTNLTMLDLSYNNLNVVGNDSFAWLPQLEY  276 (680)
T ss_dssp             EECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGG---GSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             hhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccC---cCCCCEEECCCCCcCccCcccccCcccccE
Confidence                                  3445555555555554444444433   01366777777666544    556666777


Q ss_pred             EEccCCccccccCccccCCCCCCEeeCCC
Q 044980          277 LDFSLNMLNGSIPLSLGQISHLEYLDLSN  305 (313)
Q Consensus       277 L~l~~n~l~~~ip~~l~~l~~L~~L~l~~  305 (313)
                      |++++|.+.+..|..+..+++|++|++++
T Consensus       277 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  305 (680)
T 1ziw_A          277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKR  305 (680)
T ss_dssp             EECCSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred             eeCCCCccCccChhhhcCCCCccEEeccc
Confidence            77777766655555454444444444443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.94  E-value=6e-26  Score=199.64  Aligned_cols=220  Identities=21%  Similarity=0.214  Sum_probs=187.5

Q ss_pred             CCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980           72 FGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF  150 (313)
Q Consensus        72 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  150 (313)
                      .++|+.|++++|.+.+..+..+.++++|++|++++|.+   ....| .+.++++|++|++++|.++...+. +.  ++|+
T Consensus        53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-~~--~~L~  126 (332)
T 2ft3_A           53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI---SKIHEKAFSPLRKLQKLYISKNHLVEIPPN-LP--SSLV  126 (332)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC---CEECGGGSTTCTTCCEEECCSSCCCSCCSS-CC--TTCC
T ss_pred             CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCcc---CccCHhHhhCcCCCCEEECCCCcCCccCcc-cc--ccCC
Confidence            46899999999999987777899999999999999996   23323 688999999999999999854332 22  7899


Q ss_pred             eeeccCcccCcCCCCCCCCCCCCCEEEccCCCCC--CCCchhhhcCcccccccccccccccccccccccccccCCCcCEE
Q 044980          151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFN--FTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSI  228 (313)
Q Consensus       151 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L  228 (313)
                      +|++++|.+++..+..+..+++|++|++++|.++  +..|..+..+ +|+.  +++++|  .+.. +|..+.  ++|++|
T Consensus       127 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~--L~l~~n--~l~~-l~~~~~--~~L~~L  198 (332)
T 2ft3_A          127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNY--LRISEA--KLTG-IPKDLP--ETLNEL  198 (332)
T ss_dssp             EEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSC--CBCCSS--BCSS-CCSSSC--SSCSCC
T ss_pred             EEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCE--EECcCC--CCCc-cCcccc--CCCCEE
Confidence            9999999999665667899999999999999985  3667777777 8999  999998  5544 555543  689999


Q ss_pred             EccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCC
Q 044980          229 DFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLS  304 (313)
Q Consensus       229 ~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~  304 (313)
                      ++++|.+.+..+..+..++     +|+.|++++|.+++.    +..+++|++|++++|+++ .+|..+..+++|++|+++
T Consensus       199 ~l~~n~i~~~~~~~l~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~  272 (332)
T 2ft3_A          199 HLDHNKIQAIELEDLLRYS-----KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH  272 (332)
T ss_dssp             BCCSSCCCCCCTTSSTTCT-----TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECC
T ss_pred             ECCCCcCCccCHHHhcCCC-----CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECC
Confidence            9999999988878888888     999999999998876    778899999999999999 899999999999999999


Q ss_pred             CCcCccc
Q 044980          305 NNKFVTK  311 (313)
Q Consensus       305 ~n~l~~~  311 (313)
                      +|++++.
T Consensus       273 ~N~l~~~  279 (332)
T 2ft3_A          273 TNNITKV  279 (332)
T ss_dssp             SSCCCBC
T ss_pred             CCCCCcc
Confidence            9999863

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=7.1e-27  Score=203.83  Aligned_cols=222  Identities=21%  Similarity=0.173  Sum_probs=181.9

Q ss_pred             cceecCCCCcc-ccccccccc-------CCCCCcEeeccCCCCCCCCCCch-hh--ccCCCCCEEEcCCccCCCCCchhh
Q 044980           75 LKYSDAEDDDH-YMRSKLVVG-------NLSNLQYLDLSWIDCRLHVDSLS-WL--SSLLLLEHIDLGQVHLGKASDCWI  143 (313)
Q Consensus        75 L~~L~l~~n~~-~~~~~~~l~-------~l~~L~~L~L~~n~~~~~~~~~~-~~--~~l~~L~~L~l~~n~l~~~~~~~~  143 (313)
                      |+.|++++|.+ .+.+|..+.       ++++|++|++++|.+   .+.+| .+  ..+++|++|++++|.+++. |..+
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~  140 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV---TGTAPPPLLEATGPDLNILNLRNVSWATR-DAWL  140 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBC---BSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcc---cchhHHHHHHhcCCCccEEEccCCCCcch-hHHH
Confidence            88899999988 456666665       789999999999996   33444 33  7899999999999999988 7778


Q ss_pred             hhc-----CccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCC--Cchhh--hcCccccccccccccccccccc-
Q 044980          144 YSL-----RHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFT--SPGWL--SKLNELSSFLLNLVSCMVRFHQ-  213 (313)
Q Consensus       144 ~~l-----~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~p~~~--~~l~~L~~~~L~l~~n~~~~~~-  213 (313)
                      ..+     ++|++|++++|++++..|..+..+++|++|++++|.+.+.  .|..+  ..+++|++  |++++|  .+.. 
T Consensus       141 ~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~--L~L~~N--~l~~~  216 (312)
T 1wwl_A          141 AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQV--LALRNA--GMETP  216 (312)
T ss_dssp             HHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCE--EECTTS--CCCCH
T ss_pred             HHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCE--EECCCC--cCcch
Confidence            877     8999999999999988778999999999999999998765  33444  78999999  999999  5542 


Q ss_pred             -ccc-cccccCCCcCEEEccCCCCCCCcc-hhhhhhccccccCccEEEcccccccccccC-CCCCCEEEccCCccccccC
Q 044980          214 -LIP-TSFIRLCKLTSIDFSSVKLSQDIS-QVLDIFSAYGTYALVSLILSHCQISAALGK-LSSLRNLDFSLNMLNGSIP  289 (313)
Q Consensus       214 -~~~-~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~L~~L~l~~n~l~~~ip  289 (313)
                       .++ ..+..+++|++|++++|.+.+..| ..+..++     +|+.|++++|.++..... .++|++|++++|++++ +|
T Consensus       217 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~-----~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~-~p  290 (312)
T 1wwl_A          217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS-----QLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDR-NP  290 (312)
T ss_dssp             HHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT-----TCCEEECTTSCCSSCCSSCCSEEEEEECCSSCCCS-CC
T ss_pred             HHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC-----CCCEEECCCCccChhhhhccCCceEEECCCCCCCC-Ch
Confidence             222 344677899999999999998764 3344455     899999999999865211 1799999999999995 47


Q ss_pred             ccccCCCCCCEeeCCCCcCccc
Q 044980          290 LSLGQISHLEYLDLSNNKFVTK  311 (313)
Q Consensus       290 ~~l~~l~~L~~L~l~~n~l~~~  311 (313)
                      . +..+++|++|++++|++++.
T Consensus       291 ~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          291 S-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             C-TTTSCEEEEEECTTCTTTCC
T ss_pred             h-HhhCCCCCEEeccCCCCCCC
Confidence            6 89999999999999999874

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.94  E-value=1e-25  Score=221.20  Aligned_cols=228  Identities=24%  Similarity=0.245  Sum_probs=136.6

Q ss_pred             CCCCcceecCCCCcccccc-cccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchh--hhhc
Q 044980           71 PFGYLKYSDAEDDDHYMRS-KLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCW--IYSL  146 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l  146 (313)
                      ++++|+.|++++|...+.+ |.+|.++++|++|+|++|.+   ....| .+.++++|++|++++|.+++..+..  +..+
T Consensus        46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l---~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L  122 (844)
T 3j0a_A           46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI---YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL  122 (844)
T ss_dssp             SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC---CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred             ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC---cccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence            5667777777777555555 55677777777777777775   22223 5667777777777777776644432  6677


Q ss_pred             CccCeeeccCcccCcCCC-CCCCCCCCCCEEEccCCCCCCCCchhhhcC--cccccccccccccccccccccccccccCC
Q 044980          147 RHLFFIVLSYNQFQGKIP-STLGNLTSLKQIDLSHNQFNFTSPGWLSKL--NELSSFLLNLVSCMVRFHQLIPTSFIRLC  223 (313)
Q Consensus       147 ~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l--~~L~~~~L~l~~n~~~~~~~~~~~~~~~~  223 (313)
                      ++|++|++++|.+++..+ ..+.++++|++|++++|.+++..+..+..+  ++|+.  ++++.|  .+.+..|..++.+.
T Consensus       123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~--L~L~~n--~l~~~~~~~~~~~~  198 (844)
T 3j0a_A          123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF--FSLAAN--SLYSRVSVDWGKCM  198 (844)
T ss_dssp             SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC--CEECCS--BSCCCCCCCCCSSS
T ss_pred             CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce--EECCCC--ccccccccchhhcC
Confidence            777777777777765443 456777777777777777776666666555  55555  555555  33333333333333


Q ss_pred             C------cCEEEccCCCCCCCcc---------------------------------------------------------
Q 044980          224 K------LTSIDFSSVKLSQDIS---------------------------------------------------------  240 (313)
Q Consensus       224 ~------L~~L~l~~n~l~~~~~---------------------------------------------------------  240 (313)
                      +      |+.|++++|.+.+..+                                                         
T Consensus       199 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l  278 (844)
T 3j0a_A          199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV  278 (844)
T ss_dssp             CTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCC
T ss_pred             CccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcc
Confidence            2      5555555555444333                                                         


Q ss_pred             -----hhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCcc
Q 044980          241 -----QVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       241 -----~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~  310 (313)
                           ..+..++     +|+.|++++|.+++.    +..+++|++|++++|.+.+..|..+..+++|++|++++|++++
T Consensus       279 ~~~~~~~~~~l~-----~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~  352 (844)
T 3j0a_A          279 FSLNSRVFETLK-----DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI  352 (844)
T ss_dssp             CEECSCCSSSCC-----CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCC
T ss_pred             cccChhhhhcCC-----CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCc
Confidence                 3333333     555555555555443    4555666666666666665555566666666666666666543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.94  E-value=2.9e-25  Score=210.96  Aligned_cols=124  Identities=23%  Similarity=0.176  Sum_probs=89.1

Q ss_pred             CEEEEecCC------------CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCc-hhhccCCCCCEE
Q 044980           62 HILELNLEN------------PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSL-SWLSSLLLLEHI  128 (313)
Q Consensus        62 ~v~~l~l~~------------~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~-~~~~~l~~L~~L  128 (313)
                      .++.+++++            ++++|++|++++|.+++..+.+|.++++|++|+|++|.+   .... ..|.++++|++|
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l---~~l~~~~f~~L~~L~~L  129 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI---QSLALGAFSGLSSLQKL  129 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC---CEECGGGGTTCTTCCEE
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC---CCCCHHHhcCCCCCCEE
Confidence            556666665            567788888888887776666777888888888888875   1212 247778888888


Q ss_pred             EcCCccCCCCCchhhhhcCccCeeeccCcccCc-CCCCCCCCCCCCCEEEccCCCCCCCCc
Q 044980          129 DLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQG-KIPSTLGNLTSLKQIDLSHNQFNFTSP  188 (313)
Q Consensus       129 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p  188 (313)
                      ++++|.+++..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..+
T Consensus       130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  190 (635)
T 4g8a_A          130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  190 (635)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence            888888877666667778888888888887764 356667778888888888877654433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.93  E-value=1.9e-25  Score=210.01  Aligned_cols=87  Identities=24%  Similarity=0.254  Sum_probs=64.3

Q ss_pred             ccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc------ccCCCCCCEEEccCCccccccCc-cc
Q 044980          220 IRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA------LGKLSSLRNLDFSLNMLNGSIPL-SL  292 (313)
Q Consensus       220 ~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~------~~~~~~L~~L~l~~n~l~~~ip~-~l  292 (313)
                      +.+++|++|++++|.+.+.+|..+..++     +|+.|++++|++++.      +..+++|++|++++|.+++.+|. .+
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~  424 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLK-----RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC  424 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCS-----SCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC
T ss_pred             cCCCCceEEECCCCccccchhhhhcccC-----CCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh
Confidence            5567788888888888877777776666     788888888887752      56778888888888888765665 35


Q ss_pred             cCCCCCCEeeCCCCcCccc
Q 044980          293 GQISHLEYLDLSNNKFVTK  311 (313)
Q Consensus       293 ~~l~~L~~L~l~~n~l~~~  311 (313)
                      ..+++|++|++++|++++.
T Consensus       425 ~~l~~L~~L~l~~n~l~~~  443 (562)
T 3a79_B          425 AWAESILVLNLSSNMLTGS  443 (562)
T ss_dssp             CCCTTCCEEECCSSCCCGG
T ss_pred             cCcccCCEEECCCCCCCcc
Confidence            6677777777777777653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=7.2e-25  Score=187.19  Aligned_cols=213  Identities=19%  Similarity=0.206  Sum_probs=159.3

Q ss_pred             CCCcccCceEecCCCCCEEEEecCCCCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCC
Q 044980           46 GDCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLL  124 (313)
Q Consensus        46 ~~~c~~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~  124 (313)
                      .++|.|.|+.|...             ...+.++++++.++. +|..+.  +.|++|++++|.+   ....+ .+.++++
T Consensus         2 ~~~C~~~~~~C~c~-------------~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l---~~~~~~~~~~l~~   62 (270)
T 2o6q_A            2 EALCKKDGGVCSCN-------------NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKL---SSLPSKAFHRLTK   62 (270)
T ss_dssp             CCCBGGGTCSBEEE-------------TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCC---SCCCTTSSSSCTT
T ss_pred             CccCCCCCCCCEeC-------------CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCC---CeeCHHHhcCCCC
Confidence            47899999888531             124455666677774 666554  6799999999986   22222 6888999


Q ss_pred             CCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccc
Q 044980          125 LEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNL  204 (313)
Q Consensus       125 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l  204 (313)
                      |++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++  |++
T Consensus        63 L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~--L~L  140 (270)
T 2o6q_A           63 LRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY--LSL  140 (270)
T ss_dssp             CCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE--EEC
T ss_pred             CCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCE--EEC
Confidence            999999999998776666788899999999999998666667788899999999999988777777778888888  788


Q ss_pred             cccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEcc
Q 044980          205 VSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFS  280 (313)
Q Consensus       205 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~  280 (313)
                      ++|  .+....+..+..+++|+.|++++|.+.+..+..+..++     +|+.|++++|.+++.    +..+++|+.|+++
T Consensus       141 s~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  213 (270)
T 2o6q_A          141 GYN--ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT-----ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ  213 (270)
T ss_dssp             CSS--CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-----TCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CCC--cCCccCHhHccCCcccceeEecCCcCcEeChhHhccCC-----CcCEEECCCCcCCcCCHHHhccccCCCEEEec
Confidence            777  55555555577777888888888887766555566666     777777777776654    5556777777777


Q ss_pred             CCcccc
Q 044980          281 LNMLNG  286 (313)
Q Consensus       281 ~n~l~~  286 (313)
                      +|.+..
T Consensus       214 ~N~~~c  219 (270)
T 2o6q_A          214 ENPWDC  219 (270)
T ss_dssp             SSCBCC
T ss_pred             CCCeeC
Confidence            777653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.93  E-value=4.4e-25  Score=198.29  Aligned_cols=222  Identities=18%  Similarity=0.187  Sum_probs=166.6

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCc-hhhccCCCCCEEEcCCccCCCCCchhhhhcCcc
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSL-SWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHL  149 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  149 (313)
                      .+++++.++++++.+...-+..+.++++|++|++++|.+   .... ..+..+++|++|++++|.+++..|..+..+++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  119 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI---EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  119 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCC---CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcc---cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence            568999999999998764444578899999999999986   2222 268899999999999999999888889999999


Q ss_pred             CeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCC------
Q 044980          150 FFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLC------  223 (313)
Q Consensus       150 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~------  223 (313)
                      ++|++++|.++...+..+..+++|++|++++|.+.+..|..+..+++|++  |++++|  .+...-   ++.++      
T Consensus       120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~--L~l~~n--~l~~~~---~~~l~~L~~L~  192 (390)
T 3o6n_A          120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN--LQLSSN--RLTHVD---LSLIPSLFHAN  192 (390)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCE--EECCSS--CCSBCC---GGGCTTCSEEE
T ss_pred             CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCE--EECCCC--cCCccc---cccccccceee
Confidence            99999999999444444689999999999999999888888999999999  999888  333321   12222      


Q ss_pred             ----------------------------------CcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc--
Q 044980          224 ----------------------------------KLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--  267 (313)
Q Consensus       224 ----------------------------------~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--  267 (313)
                                                        +|+.|++++|.+.+.  ..+..++     +|+.|++++|.+++.  
T Consensus       193 l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~-----~L~~L~Ls~n~l~~~~~  265 (390)
T 3o6n_A          193 VSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYP-----GLVEVDLSYNELEKIMY  265 (390)
T ss_dssp             CCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCT-----TCSEEECCSSCCCEEES
T ss_pred             cccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCC-----CccEEECCCCcCCCcCh
Confidence                                              344455555555432  2344444     677777777776654  


Q ss_pred             --ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCcc
Q 044980          268 --LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       268 --~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~  310 (313)
                        +..+++|++|++++|+++ .+|..+..+++|++|++++|++++
T Consensus       266 ~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~~  309 (390)
T 3o6n_A          266 HPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH  309 (390)
T ss_dssp             GGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCCC
T ss_pred             hHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCccee
Confidence              566677777777777776 456556667777777777777654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.93  E-value=4.5e-25  Score=211.92  Aligned_cols=253  Identities=20%  Similarity=0.176  Sum_probs=205.8

Q ss_pred             cccCceEecCCCCCEEEEecCCCCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCE
Q 044980           49 CKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEH  127 (313)
Q Consensus        49 c~~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~  127 (313)
                      |.+..+.|...  +++.+.- .-.++++.|++++|.+.+..+..|.++++|++|++++|.+   .+..| .+.++++|++
T Consensus         4 ~~~~~~~cs~~--~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~   77 (680)
T 1ziw_A            4 VSHEVADCSHL--KLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI---SKLEPELCQKLPMLKV   77 (680)
T ss_dssp             CBSSEEECCSS--CCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCC---CCCCTTHHHHCTTCCE
T ss_pred             eECCeeECCCC--Ccccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCcc---CccCHHHHhcccCcCE
Confidence            45556777532  2222211 1226899999999999988777899999999999999986   33334 6889999999


Q ss_pred             EEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccc
Q 044980          128 IDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSC  207 (313)
Q Consensus       128 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n  207 (313)
                      |++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++++|.+++..|..+..+++|++  |++++|
T Consensus        78 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~--L~L~~n  155 (680)
T 1ziw_A           78 LNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQE--LLLSNN  155 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCE--EECCSS
T ss_pred             EECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCE--EEccCC
Confidence            999999999877667999999999999999999777788999999999999999999888888999999999  999998


Q ss_pred             ccccccccccccc--cCCCcCEEEccCCCCCCCcchhhhhhccc----------------------cccCccEEEccccc
Q 044980          208 MVRFHQLIPTSFI--RLCKLTSIDFSSVKLSQDISQVLDIFSAY----------------------GTYALVSLILSHCQ  263 (313)
Q Consensus       208 ~~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~l~~~~~~----------------------~~~~L~~L~Ls~n~  263 (313)
                        .+.+..+..+.  .+++|+.|++++|.+.+..|..+..+...                      ..++|+.|++++|.
T Consensus       156 --~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~  233 (680)
T 1ziw_A          156 --KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ  233 (680)
T ss_dssp             --CCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC
T ss_pred             --cccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc
Confidence              66666666554  45789999999999998877666544310                      11368888999988


Q ss_pred             cccc----ccCCC--CCCEEEccCCccccccCccccCCCCCCEeeCCCCcCccc
Q 044980          264 ISAA----LGKLS--SLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTK  311 (313)
Q Consensus       264 l~~~----~~~~~--~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~~  311 (313)
                      +++.    +..++  +|++|++++|.+.+..|..+..+++|++|++++|.+++.
T Consensus       234 l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  287 (680)
T 1ziw_A          234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL  287 (680)
T ss_dssp             CCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE
T ss_pred             ccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc
Confidence            8765    55554  499999999999988888999999999999999998764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=7.6e-25  Score=187.57  Aligned_cols=203  Identities=21%  Similarity=0.156  Sum_probs=107.8

Q ss_pred             CcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCee
Q 044980           74 YLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI  152 (313)
Q Consensus        74 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  152 (313)
                      +|+.|++++|.+++..+..+.++++|++|++++|.+   ....+ .+.++++|++|++++|.+++..+..+..+++|++|
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI---QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCC---CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcC---CccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence            355555555555544444455555555555555543   11111 34445555555555555544444444455555555


Q ss_pred             eccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccC
Q 044980          153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSS  232 (313)
Q Consensus       153 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~  232 (313)
                      ++++|.+.+..+..+..+++|++|++++|.+.+.                           .+|..++.+++|++|++++
T Consensus       106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------------~l~~~~~~l~~L~~L~Ls~  158 (276)
T 2z62_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSF---------------------------KLPEYFSNLTNLEHLDLSS  158 (276)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC---------------------------CCCGGGGGCTTCCEEECCS
T ss_pred             ECCCCCccccCchhcccCCCCCEEECcCCcccee---------------------------cCchhhccCCCCCEEECCC
Confidence            5555555433333444455555555555544431                           1345555556666666666


Q ss_pred             CCCCCCcchhhhhhccccccCcc----EEEccccccccc---ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCC
Q 044980          233 VKLSQDISQVLDIFSAYGTYALV----SLILSHCQISAA---LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSN  305 (313)
Q Consensus       233 n~l~~~~~~~l~~~~~~~~~~L~----~L~Ls~n~l~~~---~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~  305 (313)
                      |.+.+..+..+..+.     +|+    .|++++|.+++.   .....+|++|++++|.+++..+..+..+++|++|++++
T Consensus       159 N~l~~~~~~~~~~l~-----~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  233 (276)
T 2z62_A          159 NKIQSIYCTDLRVLH-----QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT  233 (276)
T ss_dssp             SCCCEECGGGGHHHH-----TCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred             CCCCcCCHHHhhhhh-----hccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccC
Confidence            666655555555555     444    666666666554   22233677777777777644444456667777777777


Q ss_pred             CcCccc
Q 044980          306 NKFVTK  311 (313)
Q Consensus       306 n~l~~~  311 (313)
                      |+++++
T Consensus       234 N~~~c~  239 (276)
T 2z62_A          234 NPWDCS  239 (276)
T ss_dssp             SCBCCC
T ss_pred             Cccccc
Confidence            766653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.93  E-value=8.7e-26  Score=214.04  Aligned_cols=208  Identities=23%  Similarity=0.231  Sum_probs=150.0

Q ss_pred             ccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCC-CCCCCCC
Q 044980           93 VGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIP-STLGNLT  171 (313)
Q Consensus        93 l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~  171 (313)
                      +..+++|++|++++|.+.........+..+++|++|++++|.+.+. |..+..+++|++|++++|.+.+..| ..+..++
T Consensus       346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  424 (606)
T 3vq2_A          346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE  424 (606)
T ss_dssp             CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred             hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccc-hhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence            3445555555555555311100122455666777777777766543 3446667777777777777776655 5677778


Q ss_pred             CCCEEEccCCCCCCCCchhhhcCccccccccccccccccccc-ccccccccCCCcCEEEccCCCCCCCcchhhhhhcccc
Q 044980          172 SLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQ-LIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYG  250 (313)
Q Consensus       172 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~  250 (313)
                      +|++|++++|.+.+..|..+..+++|+.  |++++|  .+.+ .+|..++.+++|++|++++|.+.+..|..+..++   
T Consensus       425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~--L~l~~n--~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~---  497 (606)
T 3vq2_A          425 KLLYLDISYTNTKIDFDGIFLGLTSLNT--LKMAGN--SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH---  497 (606)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTCTTCCE--EECTTC--EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT---
T ss_pred             cCCEEECcCCCCCccchhhhcCCCCCCE--EECCCC--cCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc---
Confidence            8888888888887777777888888888  888877  5555 4677788888888888888888877777777777   


Q ss_pred             ccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCC-CCCEeeCCCCcCccc
Q 044980          251 TYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQIS-HLEYLDLSNNKFVTK  311 (313)
Q Consensus       251 ~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~-~L~~L~l~~n~l~~~  311 (313)
                        +|+.|++++|++++.    +..+++|++|++++|+++ .+|..+..++ +|+++++++|.+.++
T Consensus       498 --~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~  560 (606)
T 3vq2_A          498 --RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACI  560 (606)
T ss_dssp             --TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred             --cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccC
Confidence              888888888888765    677888888888888888 7777777776 588888888888764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.93  E-value=7e-26  Score=220.66  Aligned_cols=181  Identities=19%  Similarity=0.258  Sum_probs=143.0

Q ss_pred             CCCCcceecCCCCcccc-----------------ccccccc--CCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEc
Q 044980           71 PFGYLKYSDAEDDDHYM-----------------RSKLVVG--NLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDL  130 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~-----------------~~~~~l~--~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l  130 (313)
                      ++++|+.|++++|.+++                 .+|+.++  ++++|++|+|++|.+   .+.+| .+.++++|++|++
T Consensus       446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l---~~~iP~~l~~L~~L~~L~L  522 (876)
T 4ecn_A          446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN---MTQLPDFLYDLPELQSLNI  522 (876)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT---CCSCCGGGGGCSSCCEEEC
T ss_pred             cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC---CccChHHHhCCCCCCEEEC
Confidence            78899999999999998                 3888877  999999999999985   45555 6888999999999


Q ss_pred             CCcc-CCC-CCchhhhhcC-------ccCeeeccCcccCcCCCC--CCCCCCCCCEEEccCCCCCCCCchhhhcCccccc
Q 044980          131 GQVH-LGK-ASDCWIYSLR-------HLFFIVLSYNQFQGKIPS--TLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSS  199 (313)
Q Consensus       131 ~~n~-l~~-~~~~~~~~l~-------~L~~L~L~~n~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~  199 (313)
                      ++|. +++ .+|..+..+.       +|++|++++|.++ .+|.  .+.++++|++|++++|.++ .+| .++.+++|+.
T Consensus       523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~  599 (876)
T 4ecn_A          523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTD  599 (876)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESE
T ss_pred             cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceE
Confidence            9998 887 7787777766       8999999999998 8888  8888999999999999988 777 7888888998


Q ss_pred             ccccccccccccccccccccccCCC-cCEEEccCCCCCCCcchhhhhhccccccCccEEEcccccccc
Q 044980          200 FLLNLVSCMVRFHQLIPTSFIRLCK-LTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA  266 (313)
Q Consensus       200 ~~L~l~~n~~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~  266 (313)
                        |++++|  .+. .+|..+..+++ |+.|++++|.+. .+|..+....   .++|+.|++++|++++
T Consensus       600 --L~Ls~N--~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~---~~~L~~L~Ls~N~l~g  658 (876)
T 4ecn_A          600 --LKLDYN--QIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKS---VYVMGSVDFSYNKIGS  658 (876)
T ss_dssp             --EECCSS--CCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTC---SSCEEEEECCSSCTTT
T ss_pred             --EECcCC--ccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccc---cCCCCEEECcCCcCCC
Confidence              888888  455 57878888888 888888888887 5565444332   0025555555555443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=1.5e-27  Score=208.18  Aligned_cols=222  Identities=17%  Similarity=0.179  Sum_probs=182.5

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhc-------cCCCCCEEEcCCccCCCCCchh
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLS-------SLLLLEHIDLGQVHLGKASDCW  142 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~-------~l~~L~~L~l~~n~l~~~~~~~  142 (313)
                      ..++|+.+++++|.+  .+|..+...  |++|++++|.+  ....++ .+.       ++++|++|++++|.+++..|..
T Consensus        41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l--~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTV--RAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEE--EEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred             cCCCceeEeeccccc--ccHHHHHHH--Hhhcccccccc--cCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence            456788999999999  678766654  99999999986  222334 232       6899999999999999888876


Q ss_pred             h--hhcCccCeeeccCcccCcCCCCCCCCC-----CCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccc-
Q 044980          143 I--YSLRHLFFIVLSYNQFQGKIPSTLGNL-----TSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQL-  214 (313)
Q Consensus       143 ~--~~l~~L~~L~L~~n~~~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~-  214 (313)
                      +  ..+++|++|++++|.+++. |..+..+     ++|++|++++|.+.+..|..++.+++|++  |++++|  .+.+. 
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~--L~Ls~N--~l~~~~  189 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST--LDLSDN--PELGER  189 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCE--EECCSC--TTCHHH
T ss_pred             HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCE--EECCCC--CcCcch
Confidence            5  8899999999999999976 7777666     89999999999999888889999999999  999999  44433 


Q ss_pred             -ccccc--ccCCCcCEEEccCCCCCCC--cc-hhhhhhccccccCccEEEccccccccc-----ccCCCCCCEEEccCCc
Q 044980          215 -IPTSF--IRLCKLTSIDFSSVKLSQD--IS-QVLDIFSAYGTYALVSLILSHCQISAA-----LGKLSSLRNLDFSLNM  283 (313)
Q Consensus       215 -~~~~~--~~~~~L~~L~l~~n~l~~~--~~-~~l~~~~~~~~~~L~~L~Ls~n~l~~~-----~~~~~~L~~L~l~~n~  283 (313)
                       +|..+  +.+++|++|++++|.+.+.  ++ ..+..++     +|+.|++++|++++.     +..+++|++|++++|.
T Consensus       190 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~  264 (312)
T 1wwl_A          190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV-----QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG  264 (312)
T ss_dssp             HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC-----CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred             HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC-----CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence             34444  8899999999999999842  22 2234456     999999999999884     4557899999999999


Q ss_pred             cccccCccccCCCCCCEeeCCCCcCccc
Q 044980          284 LNGSIPLSLGQISHLEYLDLSNNKFVTK  311 (313)
Q Consensus       284 l~~~ip~~l~~l~~L~~L~l~~n~l~~~  311 (313)
                      ++ .+|..+.  ++|++|++++|++++.
T Consensus       265 l~-~ip~~~~--~~L~~L~Ls~N~l~~~  289 (312)
T 1wwl_A          265 LK-QVPKGLP--AKLSVLDLSYNRLDRN  289 (312)
T ss_dssp             CS-SCCSSCC--SEEEEEECCSSCCCSC
T ss_pred             cC-hhhhhcc--CCceEEECCCCCCCCC
Confidence            99 8998877  8999999999999874

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=6.5e-26  Score=198.16  Aligned_cols=215  Identities=17%  Similarity=0.072  Sum_probs=184.0

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF  150 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  150 (313)
                      .+++|+.|++++|.+.+..|..+.++++|++|++++|.+   .+ .+.+..+++|++|++++|.+++..     ..++|+
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l---~~-~~~~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~  102 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL---YE-TLDLESLSTLRTLDLNNNYVQELL-----VGPSIE  102 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCC---EE-EEEETTCTTCCEEECCSSEEEEEE-----ECTTCC
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcC---Cc-chhhhhcCCCCEEECcCCcccccc-----CCCCcC
Confidence            456899999999999998888899999999999999996   22 334889999999999999987643     448899


Q ss_pred             eeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccccccccccccccc-ccCCCcCEEE
Q 044980          151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSF-IRLCKLTSID  229 (313)
Q Consensus       151 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~-~~~~~L~~L~  229 (313)
                      +|++++|.+++..+..   +++|++|++++|.+++..+..+..+++|+.  |++++|  .+....+..+ ..+++|++|+
T Consensus       103 ~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~--L~Ls~N--~l~~~~~~~~~~~l~~L~~L~  175 (317)
T 3o53_A          103 TLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQY--LDLKLN--EIDTVNFAELAASSDTLEHLN  175 (317)
T ss_dssp             EEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEE--EECTTS--CCCEEEGGGGGGGTTTCCEEE
T ss_pred             EEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCE--EECCCC--CCCcccHHHHhhccCcCCEEE
Confidence            9999999998654433   678999999999999877778899999999  999999  6777667666 4789999999


Q ss_pred             ccCCCCCCCcchhhhhhccccccCccEEEccccccccc---ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCC
Q 044980          230 FSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA---LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNN  306 (313)
Q Consensus       230 l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n  306 (313)
                      +++|.+.+. +. ...++     +|+.|++++|++++.   +..+++|++|++++|.++ .+|..+..+++|++|++++|
T Consensus       176 L~~N~l~~~-~~-~~~l~-----~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N  247 (317)
T 3o53_A          176 LQYNFIYDV-KG-QVVFA-----KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN  247 (317)
T ss_dssp             CTTSCCCEE-EC-CCCCT-----TCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTC
T ss_pred             CCCCcCccc-cc-ccccc-----cCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCC
Confidence            999999865 22 22345     899999999999876   778899999999999999 78999999999999999999


Q ss_pred             cCc
Q 044980          307 KFV  309 (313)
Q Consensus       307 ~l~  309 (313)
                      +++
T Consensus       248 ~~~  250 (317)
T 3o53_A          248 GFH  250 (317)
T ss_dssp             CCB
T ss_pred             Ccc
Confidence            997

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=8.3e-26  Score=208.61  Aligned_cols=215  Identities=18%  Similarity=0.094  Sum_probs=186.7

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF  150 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  150 (313)
                      .+++|+.|++++|.+.+..|..|.++++|++|+|++|.+   .+..+ +..+++|++|++++|.+++..     ..++|+
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l---~~~~~-l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~  102 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL---YETLD-LESLSTLRTLDLNNNYVQELL-----VGPSIE  102 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCC---EEEEE-CTTCTTCCEEECCSSEEEEEE-----ECTTCC
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCC---CCCcc-cccCCCCCEEEecCCcCCCCC-----CCCCcC
Confidence            445899999999999998888999999999999999996   22233 889999999999999998653     348899


Q ss_pred             eeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccc-cCCCcCEEE
Q 044980          151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFI-RLCKLTSID  229 (313)
Q Consensus       151 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~-~~~~L~~L~  229 (313)
                      +|++++|.+++..+.   .+++|+.|++++|.+++..|..++.+++|+.  |++++|  .+.+..|..+. .+++|+.|+
T Consensus       103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~--L~Ls~N--~l~~~~~~~l~~~l~~L~~L~  175 (487)
T 3oja_A          103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQY--LDLKLN--EIDTVNFAELAASSDTLEHLN  175 (487)
T ss_dssp             EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEE--EECTTS--CCCEEEGGGGGGGTTTCCEEE
T ss_pred             EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCE--EECCCC--CCCCcChHHHhhhCCcccEEe
Confidence            999999999965544   3588999999999999888888999999999  999999  77787888776 789999999


Q ss_pred             ccCCCCCCCcchhhhhhccccccCccEEEccccccccc---ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCC
Q 044980          230 FSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA---LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNN  306 (313)
Q Consensus       230 l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n  306 (313)
                      +++|.+.+..+  ...++     +|+.|+|++|.+++.   +..+++|+.|++++|.++ .+|..+..+++|+.|++++|
T Consensus       176 Ls~N~l~~~~~--~~~l~-----~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N  247 (487)
T 3oja_A          176 LQYNFIYDVKG--QVVFA-----KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN  247 (487)
T ss_dssp             CTTSCCCEEEC--CCCCT-----TCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTC
T ss_pred             cCCCccccccc--cccCC-----CCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCC
Confidence            99999987633  22355     899999999999877   778899999999999999 58998999999999999999


Q ss_pred             cCc
Q 044980          307 KFV  309 (313)
Q Consensus       307 ~l~  309 (313)
                      .+.
T Consensus       248 ~l~  250 (487)
T 3oja_A          248 GFH  250 (487)
T ss_dssp             CBC
T ss_pred             CCc
Confidence            987

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=7.8e-25  Score=207.19  Aligned_cols=222  Identities=18%  Similarity=0.192  Sum_probs=167.6

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCcc
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHL  149 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  149 (313)
                      .+.+++.+++++|.+....+..+.++++|++|+|++|.+   .+..+ .+..+++|++|++++|.+++..|..+..+++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  125 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI---EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  125 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC---CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC---CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence            567899999999998875555678899999999999996   23233 68899999999999999999888888999999


Q ss_pred             CeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCC------
Q 044980          150 FFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLC------  223 (313)
Q Consensus       150 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~------  223 (313)
                      ++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|+.  |++++|  .+.+.-   ++.++      
T Consensus       126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~--L~L~~N--~l~~~~---~~~l~~L~~L~  198 (597)
T 3oja_B          126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN--LQLSSN--RLTHVD---LSLIPSLFHAN  198 (597)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE--EECTTS--CCSBCC---GGGCTTCSEEE
T ss_pred             CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcE--EECcCC--CCCCcC---hhhhhhhhhhh
Confidence            99999999999555555789999999999999999888888999999999  999998  444321   22222      


Q ss_pred             ----------------------------------CcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc--
Q 044980          224 ----------------------------------KLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--  267 (313)
Q Consensus       224 ----------------------------------~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--  267 (313)
                                                        +|+.|++++|.+.+.  ..+..++     +|+.|++++|.+++.  
T Consensus       199 l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~--~~l~~l~-----~L~~L~Ls~N~l~~~~~  271 (597)
T 3oja_B          199 VSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYP-----GLVEVDLSYNELEKIMY  271 (597)
T ss_dssp             CCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC--GGGGGCT-----TCSEEECCSSCCCEEES
T ss_pred             cccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC--hhhccCC-----CCCEEECCCCccCCCCH
Confidence                                              344444444444432  3344444     677777777766554  


Q ss_pred             --ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCcc
Q 044980          268 --LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       268 --~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~  310 (313)
                        +..+++|+.|+|++|.++ .+|..+..+++|++|++++|.+++
T Consensus       272 ~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~~  315 (597)
T 3oja_B          272 HPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH  315 (597)
T ss_dssp             GGGTTCSSCCEEECTTSCCC-EEECSSSCCTTCCEEECCSSCCCC
T ss_pred             HHhcCccCCCEEECCCCCCC-CCCcccccCCCCcEEECCCCCCCc
Confidence              566677777777777776 356656666777777777776653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.93  E-value=3.1e-24  Score=189.66  Aligned_cols=215  Identities=26%  Similarity=0.305  Sum_probs=104.6

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCc-----------------
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQV-----------------  133 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n-----------------  133 (313)
                      .+++|+.|++++|.+.. + +.+.++++|++|++++|.+    ..++.+..+++|++|++++|                 
T Consensus        86 ~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~  159 (347)
T 4fmz_A           86 NLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNI----SDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNY  159 (347)
T ss_dssp             TCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCC----CCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCE
T ss_pred             cCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcc----cCchhhccCCceeEEECCCCCCcccccchhhCCCCcE
Confidence            56667777777776654 2 2466666666776666664    12222444444444444444                 


Q ss_pred             ------cCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccc
Q 044980          134 ------HLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSC  207 (313)
Q Consensus       134 ------~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n  207 (313)
                            .+.+..+  +..+++|++|++++|.+.+ ++. +..+++|+++++++|.+.+..+  +..+++|++  +++++|
T Consensus       160 L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~--L~l~~n  231 (347)
T 4fmz_A          160 LTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNS--LKIGNN  231 (347)
T ss_dssp             EECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCE--EECCSS
T ss_pred             EEecCCCcCCchh--hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCCCch--hhcCCcCCE--EEccCC
Confidence                  4433322  3444445555555554442 121 3333444444444444332221  444455555  555554


Q ss_pred             ccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc--ccCCCCCCEEEccCCccc
Q 044980          208 MVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--LGKLSSLRNLDFSLNMLN  285 (313)
Q Consensus       208 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~  285 (313)
                        .+....+  +..+++|++|++++|.+.+.  +.+..++     +|+.|++++|.+++.  +..+++|++|++++|.+.
T Consensus       232 --~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~-----~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~  300 (347)
T 4fmz_A          232 --KITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLT-----KLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLG  300 (347)
T ss_dssp             --CCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCT-----TCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC
T ss_pred             --ccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCC-----CcCEEEccCCccCCChhhcCCCCCCEEECcCCcCC
Confidence              2222211  44455555555555555432  2233333     555555555555444  444555555555555555


Q ss_pred             cccCccccCCCCCCEeeCCCCcCcc
Q 044980          286 GSIPLSLGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       286 ~~ip~~l~~l~~L~~L~l~~n~l~~  310 (313)
                      +..|..+..+++|++|++++|++++
T Consensus       301 ~~~~~~l~~l~~L~~L~L~~n~l~~  325 (347)
T 4fmz_A          301 NEDMEVIGGLTNLTTLFLSQNHITD  325 (347)
T ss_dssp             GGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred             CcChhHhhccccCCEEEccCCcccc
Confidence            5555555555555555555555544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.93  E-value=1.3e-25  Score=212.83  Aligned_cols=223  Identities=20%  Similarity=0.175  Sum_probs=193.7

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCC--chhhhhcCc
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKAS--DCWIYSLRH  148 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~  148 (313)
                      .+++|+.|++++|.+ +.+| .+ .+++|++|++++|..   ...+ .+..+++|++|++++|.+++..  +..+..+++
T Consensus       305 ~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~---~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~  377 (606)
T 3vq2_A          305 KHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKG---SISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS  377 (606)
T ss_dssp             TTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSS---CEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSC
T ss_pred             ccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcC---ccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCc
Confidence            556788888888888 6677 45 788888888888853   1222 4678899999999999988663  677899999


Q ss_pred             cCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCc-hhhhcCcccccccccccccccccccccccccccCCCcCE
Q 044980          149 LFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSP-GWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTS  227 (313)
Q Consensus       149 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~  227 (313)
                      |++|++++|.++ .+|..+..+++|++|++++|.+.+..| ..+..+++|+.  +++++|  .+.+..|..++.+++|++
T Consensus       378 L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~--L~l~~n--~l~~~~~~~~~~l~~L~~  452 (606)
T 3vq2_A          378 LRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY--LDISYT--NTKIDFDGIFLGLTSLNT  452 (606)
T ss_dssp             CCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE--EECTTS--CCEECCTTTTTTCTTCCE
T ss_pred             ccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCE--EECcCC--CCCccchhhhcCCCCCCE
Confidence            999999999998 467889999999999999999988777 67899999999  999999  777888999999999999


Q ss_pred             EEccCCCCCCC-cchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEee
Q 044980          228 IDFSSVKLSQD-ISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLD  302 (313)
Q Consensus       228 L~l~~n~l~~~-~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~  302 (313)
                      |++++|.+.+. +|..+..++     +|+.|++++|++++.    +..+++|++|++++|++++.+|..+..+++|++|+
T Consensus       453 L~l~~n~l~~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  527 (606)
T 3vq2_A          453 LKMAGNSFKDNTLSNVFANTT-----NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD  527 (606)
T ss_dssp             EECTTCEEGGGEECSCCTTCT-----TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEE
T ss_pred             EECCCCcCCCcchHHhhccCC-----CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEE
Confidence            99999999874 677788888     999999999999876    78899999999999999988899999999999999


Q ss_pred             CCCCcCcc
Q 044980          303 LSNNKFVT  310 (313)
Q Consensus       303 l~~n~l~~  310 (313)
                      +++|+++.
T Consensus       528 l~~N~l~~  535 (606)
T 3vq2_A          528 CSFNRIET  535 (606)
T ss_dssp             CTTSCCCC
T ss_pred             CCCCcCcc
Confidence            99999874

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=4.2e-25  Score=191.98  Aligned_cols=218  Identities=20%  Similarity=0.230  Sum_probs=184.2

Q ss_pred             eecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch--hhccCCCCCEEEcCCccCCCC--CchhhhhcCccCee
Q 044980           77 YSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS--WLSSLLLLEHIDLGQVHLGKA--SDCWIYSLRHLFFI  152 (313)
Q Consensus        77 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L  152 (313)
                      .++++++.++ .+|..+.  ++|++|++++|.+    ..+|  .+.++++|++|++++|.++..  .+..+..+++|++|
T Consensus        11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l----~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L   83 (306)
T 2z66_A           11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKL----QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL   83 (306)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCCEEECCSSCC----CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEE
T ss_pred             EEEcCCCCcc-cCCCCCC--CCCCEEECCCCcc----CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEE
Confidence            3455556655 3565443  6899999999996    2343  478999999999999999744  25667789999999


Q ss_pred             eccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCc-hhhhcCcccccccccccccccccccccccccccCCCcCEEEcc
Q 044980          153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSP-GWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFS  231 (313)
Q Consensus       153 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~  231 (313)
                      ++++|.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++  |++++|  .+....+..+..+++|++|+++
T Consensus        84 ~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~--L~l~~n--~l~~~~~~~~~~l~~L~~L~l~  158 (306)
T 2z66_A           84 DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY--LDISHT--HTRVAFNGIFNGLSSLEVLKMA  158 (306)
T ss_dssp             ECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCE--EECTTS--CCEECSTTTTTTCTTCCEEECT
T ss_pred             ECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCE--EECCCC--cCCccchhhcccCcCCCEEECC
Confidence            99999998 577778899999999999999986554 57889999999  999999  6777788889999999999999


Q ss_pred             CCCCCC-CcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCC
Q 044980          232 SVKLSQ-DISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNN  306 (313)
Q Consensus       232 ~n~l~~-~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n  306 (313)
                      +|.+.+ .+|..+..++     +|+.|++++|.+++.    +..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus       159 ~n~l~~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  233 (306)
T 2z66_A          159 GNSFQENFLPDIFTELR-----NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN  233 (306)
T ss_dssp             TCEEGGGEECSCCTTCT-----TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred             CCccccccchhHHhhCc-----CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence            999987 5677788787     999999999998876    778899999999999999766768899999999999999


Q ss_pred             cCccc
Q 044980          307 KFVTK  311 (313)
Q Consensus       307 ~l~~~  311 (313)
                      ++++.
T Consensus       234 ~l~~~  238 (306)
T 2z66_A          234 HIMTS  238 (306)
T ss_dssp             CCCBC
T ss_pred             CCccc
Confidence            99874

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.93  E-value=6.7e-25  Score=204.30  Aligned_cols=139  Identities=21%  Similarity=0.228  Sum_probs=75.9

Q ss_pred             CCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccccccccc--ccccccccCCCcCEEEccCCCCCCCcchh-hh
Q 044980          168 GNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQ--LIPTSFIRLCKLTSIDFSSVKLSQDISQV-LD  244 (313)
Q Consensus       168 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-l~  244 (313)
                      ..+++|++|++++|.+++..|..+..+++|++  |++++|  .+.+  .+|..++.+++|++|++++|.+.+.+|.. +.
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~--L~L~~N--~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~  396 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELET--LILQMN--QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS  396 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCE--EECCSS--CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCE--EEccCC--ccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence            34556666666666666656666666666666  666666  3333  34455566666666666666665533332 22


Q ss_pred             hhc-----------------cccccCccEEEccccccccc---ccCCCCCCEEEccCCccccccCcc-ccCCCCCCEeeC
Q 044980          245 IFS-----------------AYGTYALVSLILSHCQISAA---LGKLSSLRNLDFSLNMLNGSIPLS-LGQISHLEYLDL  303 (313)
Q Consensus       245 ~~~-----------------~~~~~~L~~L~Ls~n~l~~~---~~~~~~L~~L~l~~n~l~~~ip~~-l~~l~~L~~L~l  303 (313)
                      .++                 ..-.++|+.|++++|+++..   +..+++|++|++++|+++ .+|.. +..+++|++|++
T Consensus       397 ~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l  475 (520)
T 2z7x_B          397 WTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWL  475 (520)
T ss_dssp             CCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             cCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEEC
Confidence            222                 00001455555555555433   335566666666666666 45544 555666666666


Q ss_pred             CCCcCccc
Q 044980          304 SNNKFVTK  311 (313)
Q Consensus       304 ~~n~l~~~  311 (313)
                      ++|+++++
T Consensus       476 ~~N~~~c~  483 (520)
T 2z7x_B          476 HTNPWDCS  483 (520)
T ss_dssp             CSSCBCCC
T ss_pred             cCCCCccc
Confidence            66666553

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.93  E-value=4.6e-25  Score=206.65  Aligned_cols=85  Identities=24%  Similarity=0.322  Sum_probs=63.7

Q ss_pred             ccCCCcCEEEccCCCCCCCcchh---hhhhccccccCccEEEccccccccc------ccCCCCCCEEEccCCccccccCc
Q 044980          220 IRLCKLTSIDFSSVKLSQDISQV---LDIFSAYGTYALVSLILSHCQISAA------LGKLSSLRNLDFSLNMLNGSIPL  290 (313)
Q Consensus       220 ~~~~~L~~L~l~~n~l~~~~~~~---l~~~~~~~~~~L~~L~Ls~n~l~~~------~~~~~~L~~L~l~~n~l~~~ip~  290 (313)
                      +.+++|++|++++|.+.+.+|..   +..++     +|+.|++++|++++.      +..+++|++|++++|+++ .+|.
T Consensus       331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~  404 (549)
T 2z81_A          331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWP-----SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPD  404 (549)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHTCTTSST-----TCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCS
T ss_pred             hcCccccEEEccCCccccccccchhhhhccc-----cCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCCh
Confidence            35677788888888777655432   34444     788888888888643      677888888888888888 7888


Q ss_pred             cccCCCCCCEeeCCCCcCcc
Q 044980          291 SLGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       291 ~l~~l~~L~~L~l~~n~l~~  310 (313)
                      .+..+++|++|++++|++++
T Consensus       405 ~~~~~~~L~~L~Ls~N~l~~  424 (549)
T 2z81_A          405 SCQWPEKMRFLNLSSTGIRV  424 (549)
T ss_dssp             CCCCCTTCCEEECTTSCCSC
T ss_pred             hhcccccccEEECCCCCccc
Confidence            88888888888888887753

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.92  E-value=4.8e-25  Score=188.52  Aligned_cols=209  Identities=23%  Similarity=0.246  Sum_probs=178.2

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF  150 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  150 (313)
                      .+++|+.|++++|.+..  ...+..+++|++|++++|.+    ..++.+..+++|++|++++|.+++..+..+..+++|+
T Consensus        39 ~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKL----HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCC----CCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCC----CCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            56778888888888764  23478899999999999986    2356788999999999999999988777788999999


Q ss_pred             eeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEc
Q 044980          151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDF  230 (313)
Q Consensus       151 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l  230 (313)
                      +|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.  |++++|  .+.+..+..++.+++|++|++
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~--L~l~~n--~l~~~~~~~~~~l~~L~~L~L  188 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTE--LDLSYN--QLQSLPEGVFDKLTQLKDLRL  188 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE--EECCSS--CCCCCCTTTTTTCTTCCEEEC
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCE--EECCCC--CcCccCHHHhcCCccCCEEEC
Confidence            9999999999777777889999999999999999777777889999999  999998  677777777888999999999


Q ss_pred             cCCCCCCCcchhhhhhccccccCccEEEcccccccccccCCCCCCEEEccCCccccccCccccCCCC
Q 044980          231 SSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISH  297 (313)
Q Consensus       231 ~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~  297 (313)
                      ++|.+.+..+..+..++     +|+.|++++|.+.+   .+++|+.|+++.|.++|.+|.+++.++.
T Consensus       189 ~~N~l~~~~~~~~~~l~-----~L~~L~l~~N~~~~---~~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          189 YQNQLKSVPDGVFDRLT-----SLQYIWLHDNPWDC---TCPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             CSSCCSCCCTTTTTTCT-----TCCEEECCSSCBCC---CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             CCCcCCccCHHHHhCCc-----CCCEEEccCCCccc---cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence            99999988777778787     89999999998865   4667888999999999999998887654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.92  E-value=1.7e-24  Score=212.55  Aligned_cols=228  Identities=20%  Similarity=0.183  Sum_probs=163.8

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCc-h--hhccCCCCCEEEcCCccCCCCCc-hhhhhc
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSL-S--WLSSLLLLEHIDLGQVHLGKASD-CWIYSL  146 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~-~--~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l  146 (313)
                      ++++|+.|++++|.+.+..|..|.++++|++|+|++|.+   .+.+ +  .+.++++|++|++++|.+.+..+ ..+..+
T Consensus        71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L  147 (844)
T 3j0a_A           71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGL---SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL  147 (844)
T ss_dssp             SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCC---SSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTC
T ss_pred             CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCC---CcccccCccccccCCCCEEECCCCcccccccchhHhhC
Confidence            566777777777777766666777777777777777764   2212 1  25666666777776666665443 346666


Q ss_pred             CccCeeeccCcccCcCCCCC--------------------------CCCCCC------CCEEEccCCCCCCCCchhhhc-
Q 044980          147 RHLFFIVLSYNQFQGKIPST--------------------------LGNLTS------LKQIDLSHNQFNFTSPGWLSK-  193 (313)
Q Consensus       147 ~~L~~L~L~~n~~~~~~~~~--------------------------~~~l~~------L~~L~l~~n~l~~~~p~~~~~-  193 (313)
                      ++|++|++++|.+++..+..                          +..+++      |+.|++++|.+++..+..+.. 
T Consensus       148 ~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~  227 (844)
T 3j0a_A          148 NSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA  227 (844)
T ss_dssp             SSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGT
T ss_pred             CCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhh
Confidence            66666666666665443333                          333332      677777777665554433322 


Q ss_pred             -------------------------------------CcccccccccccccccccccccccccccCCCcCEEEccCCCCC
Q 044980          194 -------------------------------------LNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLS  236 (313)
Q Consensus       194 -------------------------------------l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  236 (313)
                                                           .++|+.  |++++|  .+....+..+..+++|+.|++++|.+.
T Consensus       228 l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~--L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~n~i~  303 (844)
T 3j0a_A          228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH--LDLSHG--FVFSLNSRVFETLKDLKVLNLAYNKIN  303 (844)
T ss_dssp             SCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCE--EECTTC--CCCEECSCCSSSCCCCCEEEEESCCCC
T ss_pred             cCcccccceecccccccccccccccCCCChhhhhccccCCccE--EECCCC--cccccChhhhhcCCCCCEEECCCCcCC
Confidence                                                 145666  677776  566667888899999999999999999


Q ss_pred             CCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCcc
Q 044980          237 QDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       237 ~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~  310 (313)
                      +..+..+..++     +|+.|++++|.+++.    +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus       304 ~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~  376 (844)
T 3j0a_A          304 KIADEAFYGLD-----NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT  376 (844)
T ss_dssp             EECTTTTTTCS-----SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred             CCChHHhcCCC-----CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence            88888888887     999999999998765    7889999999999999997777788899999999999999875

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.92  E-value=7.9e-25  Score=205.79  Aligned_cols=138  Identities=19%  Similarity=0.211  Sum_probs=78.5

Q ss_pred             CCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccccccccc--ccccccccCCCcCEEEccCCCCCCCcchh-hh
Q 044980          168 GNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQ--LIPTSFIRLCKLTSIDFSSVKLSQDISQV-LD  244 (313)
Q Consensus       168 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-l~  244 (313)
                      ..+++|++|++++|.+++..|..+..+++|+.  |++++|  .+.+  .+|..++.+++|++|++++|.+.+.+|.. +.
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~--L~L~~N--~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~  425 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQT--LILQRN--GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA  425 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCE--EECCSS--CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCE--EECCCC--CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc
Confidence            45667777777777777767777777777777  777776  4443  23455667777777777777776634332 33


Q ss_pred             hhc----------------cccc-cCccEEEccccccccc---ccCCCCCCEEEccCCccccccCcc-ccCCCCCCEeeC
Q 044980          245 IFS----------------AYGT-YALVSLILSHCQISAA---LGKLSSLRNLDFSLNMLNGSIPLS-LGQISHLEYLDL  303 (313)
Q Consensus       245 ~~~----------------~~~~-~~L~~L~Ls~n~l~~~---~~~~~~L~~L~l~~n~l~~~ip~~-l~~l~~L~~L~l  303 (313)
                      .++                .... ++|+.|++++|+++..   +..+++|++|++++|+++ .+|.. +..+++|++|++
T Consensus       426 ~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l  504 (562)
T 3a79_B          426 WAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWL  504 (562)
T ss_dssp             CCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEEC
T ss_pred             CcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEe
Confidence            333                0000 1455555555544432   334455555555555555 44443 555555555555


Q ss_pred             CCCcCcc
Q 044980          304 SNNKFVT  310 (313)
Q Consensus       304 ~~n~l~~  310 (313)
                      ++|++++
T Consensus       505 ~~N~~~c  511 (562)
T 3a79_B          505 HDNPWDC  511 (562)
T ss_dssp             CSCCBCC
T ss_pred             cCCCcCC
Confidence            5555554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.92  E-value=1.4e-23  Score=185.39  Aligned_cols=216  Identities=23%  Similarity=0.312  Sum_probs=155.9

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF  150 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  150 (313)
                      .+++|+.|++++|.+.+. +. +.++++|++|++++|.+    ..++.+.++++|++|++++|.+.+..+  +..+++|+
T Consensus        64 ~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i----~~~~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~  135 (347)
T 4fmz_A           64 YLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKI----TDISALQNLTNLRELYLNEDNISDISP--LANLTKMY  135 (347)
T ss_dssp             GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCC----CCCGGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCC
T ss_pred             hcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcc----cCchHHcCCCcCCEEECcCCcccCchh--hccCCcee
Confidence            688999999999999864 43 88999999999999986    345789999999999999999987644  78888999


Q ss_pred             eeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccc--------------
Q 044980          151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIP--------------  216 (313)
Q Consensus       151 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~--------------  216 (313)
                      +|++++|.....++ .+..+++|++|++++|.+.+..+  +..+++|+.  +++++|  .+....+              
T Consensus       136 ~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~--L~l~~n--~l~~~~~~~~l~~L~~L~l~~  208 (347)
T 4fmz_A          136 SLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS--LSLNYN--QIEDISPLASLTSLHYFTAYV  208 (347)
T ss_dssp             EEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSE--EECTTS--CCCCCGGGGGCTTCCEEECCS
T ss_pred             EEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCE--EEccCC--cccccccccCCCccceeeccc
Confidence            99999996654443 36777888888888887764433  666777777  666666  2222111              


Q ss_pred             ------cccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc--ccCCCCCCEEEccCCcccccc
Q 044980          217 ------TSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--LGKLSSLRNLDFSLNMLNGSI  288 (313)
Q Consensus       217 ------~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~~~i  288 (313)
                            ..+..+++|++|++++|.+.+..+  +..++     +|+.|++++|.+++.  +..+++|++|++++|.+++ +
T Consensus       209 n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~-----~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~  280 (347)
T 4fmz_A          209 NQITDITPVANMTRLNSLKIGNNKITDLSP--LANLS-----QLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISD-I  280 (347)
T ss_dssp             SCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCT-----TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-C
T ss_pred             CCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCC-----CCCEEECCCCccCCChhHhcCCCcCEEEccCCccCC-C
Confidence                  114555666666666666665433  44444     677777777776655  6667777777777777773 4


Q ss_pred             CccccCCCCCCEeeCCCCcCcc
Q 044980          289 PLSLGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       289 p~~l~~l~~L~~L~l~~n~l~~  310 (313)
                      + .+..+++|++|++++|++++
T Consensus       281 ~-~~~~l~~L~~L~L~~n~l~~  301 (347)
T 4fmz_A          281 S-VLNNLSQLNSLFLNNNQLGN  301 (347)
T ss_dssp             G-GGGGCTTCSEEECCSSCCCG
T ss_pred             h-hhcCCCCCCEEECcCCcCCC
Confidence            3 46677778888888777765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.92  E-value=3.3e-24  Score=196.29  Aligned_cols=218  Identities=17%  Similarity=0.140  Sum_probs=182.2

Q ss_pred             cCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcc
Q 044980           79 DAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQ  158 (313)
Q Consensus        79 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  158 (313)
                      +.++..++ .+|..+.  ++|++|+|++|.+.  ......|.++++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus        60 ~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  134 (452)
T 3zyi_A           60 VCTRRGLS-EVPQGIP--SNTRYLNLMENNIQ--MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW  134 (452)
T ss_dssp             ECCSSCCS-SCCSCCC--TTCSEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCcC-ccCCCCC--CCccEEECcCCcCc--eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence            33344554 3665553  68999999999962  1112368899999999999999998888889999999999999999


Q ss_pred             cCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCC
Q 044980          159 FQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQD  238 (313)
Q Consensus       159 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  238 (313)
                      +++..+..+..+++|++|++++|.+.+..+..+..+++|+.  |++++|. .+...-+..+.++++|+.|++++|.+.+.
T Consensus       135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~--L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR--LDLGELK-KLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCE--EECCCCT-TCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccE--EeCCCCC-CccccChhhccCCCCCCEEECCCCccccc
Confidence            99766677899999999999999999766778999999999  8888751 34444455688999999999999999864


Q ss_pred             cchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCccc
Q 044980          239 ISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTK  311 (313)
Q Consensus       239 ~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~~  311 (313)
                       | .+..++     +|+.|++++|.+++.    +..+++|+.|++++|++.+..+..+..+++|++|++++|++++.
T Consensus       212 -~-~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  281 (452)
T 3zyi_A          212 -P-NLTPLV-----GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL  281 (452)
T ss_dssp             -C-CCTTCT-----TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             -c-cccccc-----cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc
Confidence             3 355666     999999999999876    88899999999999999988888999999999999999999863

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.92  E-value=4.6e-25  Score=188.59  Aligned_cols=216  Identities=23%  Similarity=0.243  Sum_probs=182.1

Q ss_pred             CCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCee
Q 044980           73 GYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI  152 (313)
Q Consensus        73 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  152 (313)
                      .++..+++..+.+....  .+.++++|++|++++|.+    ..++.+..+++|++|++++|.+.+. + .+..+++|++|
T Consensus        19 ~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i----~~~~~l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L   90 (272)
T 3rfs_A           19 AETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDI----KSVQGIQYLPNVRYLALGGNKLHDI-S-ALKELTNLTYL   90 (272)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCC----CCCTTGGGCTTCCEEECTTSCCCCC-G-GGTTCTTCCEE
T ss_pred             HHHHHHHhcCccccccc--ccccccceeeeeeCCCCc----ccccccccCCCCcEEECCCCCCCCc-h-hhcCCCCCCEE
Confidence            34455566666655433  356789999999999986    4556788999999999999999874 3 58899999999


Q ss_pred             eccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccC
Q 044980          153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSS  232 (313)
Q Consensus       153 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~  232 (313)
                      ++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++  |++++|  .+.+..+..++.+++|+.|++++
T Consensus        91 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~--L~L~~n--~l~~~~~~~~~~l~~L~~L~l~~  166 (272)
T 3rfs_A           91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY--LNLAHN--QLQSLPKGVFDKLTNLTELDLSY  166 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE--EECCSS--CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             ECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE--EECCCC--ccCccCHHHhccCccCCEEECCC
Confidence            99999999777777899999999999999999877777899999999  999999  67777777788999999999999


Q ss_pred             CCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcC
Q 044980          233 VKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF  308 (313)
Q Consensus       233 n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l  308 (313)
                      |.+.+..+..+..++     +|+.|++++|.+++.    +..+++|+.|++++|.+.+.       +++|+.++++.|.+
T Consensus       167 n~l~~~~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~  234 (272)
T 3rfs_A          167 NQLQSLPEGVFDKLT-----QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKH  234 (272)
T ss_dssp             SCCCCCCTTTTTTCT-----TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHT
T ss_pred             CCcCccCHHHhcCCc-----cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhC
Confidence            999987777777777     999999999999876    67889999999999988743       55788999999998


Q ss_pred             cccc
Q 044980          309 VTKK  312 (313)
Q Consensus       309 ~~~~  312 (313)
                      +|.+
T Consensus       235 ~g~i  238 (272)
T 3rfs_A          235 SGVV  238 (272)
T ss_dssp             GGGB
T ss_pred             CCcc
Confidence            8865

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.92  E-value=5.7e-24  Score=194.09  Aligned_cols=218  Identities=17%  Similarity=0.144  Sum_probs=182.3

Q ss_pred             cCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcc
Q 044980           79 DAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQ  158 (313)
Q Consensus        79 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  158 (313)
                      +.++..++ .+|..+.  +.+++|+|++|.+..  .....+.++++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus        49 ~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~--~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~  123 (440)
T 3zyj_A           49 ICVRKNLR-EVPDGIS--TNTRLLNLHENQIQI--IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR  123 (440)
T ss_dssp             ECCSCCCS-SCCSCCC--TTCSEEECCSCCCCE--ECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred             EeCCCCcC-cCCCCCC--CCCcEEEccCCcCCe--eCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence            33344554 4666554  689999999999621  122368899999999999999998888889999999999999999


Q ss_pred             cCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCC
Q 044980          159 FQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQD  238 (313)
Q Consensus       159 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  238 (313)
                      ++...+..|..+++|++|++++|.+....+..+..+++|+.  |++++|. .+....+..+.++++|++|++++|.+...
T Consensus       124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~--L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  200 (440)
T 3zyj_A          124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR--LDLGELK-RLSYISEGAFEGLSNLRYLNLAMCNLREI  200 (440)
T ss_dssp             CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCE--EECCCCT-TCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred             CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCE--eCCCCCC-CcceeCcchhhcccccCeecCCCCcCccc
Confidence            99666667999999999999999999777778999999999  8888851 34444455789999999999999999854


Q ss_pred             cchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCccc
Q 044980          239 ISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTK  311 (313)
Q Consensus       239 ~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~~  311 (313)
                       | .+..++     +|+.|+|++|.+++.    +..+++|+.|++++|++.+..+..|..+++|++|++++|++++.
T Consensus       201 -~-~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  270 (440)
T 3zyj_A          201 -P-NLTPLI-----KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL  270 (440)
T ss_dssp             -C-CCTTCS-----SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred             -c-ccCCCc-----ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc
Confidence             4 355566     999999999998876    88899999999999999988888999999999999999999863

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.92  E-value=1.8e-23  Score=192.21  Aligned_cols=213  Identities=23%  Similarity=0.292  Sum_probs=165.4

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF  150 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  150 (313)
                      ++++|+.|++++|.+.+.  +.+.++++|++|++++|.+   . .++.+..+++|++|++++|.+.+.  ..+..+++|+
T Consensus       175 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l---~-~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~  246 (466)
T 1o6v_A          175 NLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQI---S-DITPLGILTNLDELSLNGNQLKDI--GTLASLTNLT  246 (466)
T ss_dssp             TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC---C-CCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred             cCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcc---c-ccccccccCCCCEEECCCCCcccc--hhhhcCCCCC
Confidence            456777777777777653  2367777888888887775   2 233366778888888888887764  2467788888


Q ss_pred             eeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEc
Q 044980          151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDF  230 (313)
Q Consensus       151 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l  230 (313)
                      +|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|+.  |++++|  .+.+..+  ++.+++|+.|++
T Consensus       247 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~--L~L~~n--~l~~~~~--~~~l~~L~~L~L  316 (466)
T 1o6v_A          247 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTN--LELNEN--QLEDISP--ISNLKNLTYLTL  316 (466)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSE--EECCSS--CCSCCGG--GGGCTTCSEEEC
T ss_pred             EEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCe--EEcCCC--cccCchh--hcCCCCCCEEEC
Confidence            88888888875433  7778888888888888875433  778888888  888888  5555433  778889999999


Q ss_pred             cCCCCCCCcchhhhhhccccccCccEEEccccccccc--ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcC
Q 044980          231 SSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF  308 (313)
Q Consensus       231 ~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l  308 (313)
                      ++|.+.+..|  +..++     +|+.|++++|.+++.  +..+++|+.|++++|++++..|  +..+++|++|++++|++
T Consensus       317 ~~n~l~~~~~--~~~l~-----~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~  387 (466)
T 1o6v_A          317 YFNNISDISP--VSSLT-----KLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW  387 (466)
T ss_dssp             CSSCCSCCGG--GGGCT-----TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEE
T ss_pred             cCCcCCCchh--hccCc-----cCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcc
Confidence            9999887655  55666     899999999998877  7888999999999999997766  78899999999999988


Q ss_pred             cc
Q 044980          309 VT  310 (313)
Q Consensus       309 ~~  310 (313)
                      ++
T Consensus       388 ~~  389 (466)
T 1o6v_A          388 TN  389 (466)
T ss_dssp             EC
T ss_pred             cC
Confidence            76

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.92  E-value=1.4e-23  Score=192.11  Aligned_cols=185  Identities=17%  Similarity=0.144  Sum_probs=86.9

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF  150 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  150 (313)
                      .+++|+.|++++|.+++. |  ++++++|++|++++|.+..    ++ +.++++|++|++++|.+++. +  +..+++|+
T Consensus        62 ~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~----~~-~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~  130 (457)
T 3bz5_A           62 KLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN----LD-VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLT  130 (457)
T ss_dssp             GCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC----CC-CTTCTTCCEEECCSSCCSCC-C--CTTCTTCC
T ss_pred             ccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce----ee-cCCCCcCCEEECCCCcCCee-c--CCCCCcCC
Confidence            344455555555554442 2  4445555555555554311    12 44445555555555555442 2  44445555


Q ss_pred             eeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEc
Q 044980          151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDF  230 (313)
Q Consensus       151 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l  230 (313)
                      +|++++|.+++ ++  +..+++|++|++++|...+.+  .+..+++|+.  |++++|  .+.+ +|  ++.+++|+.|++
T Consensus       131 ~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~--L~ls~n--~l~~-l~--l~~l~~L~~L~l  198 (457)
T 3bz5_A          131 YLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTT--LDCSFN--KITE-LD--VSQNKLLNRLNC  198 (457)
T ss_dssp             EEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE--EECCSS--CCCC-CC--CTTCTTCCEEEC
T ss_pred             EEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCE--EECCCC--ccce-ec--cccCCCCCEEEC
Confidence            55555555543 22  444455555555555433333  2444455555  555554  3332 22  444455555555


Q ss_pred             cCCCCCCCcchhhhhhccccccCccEEEccccccccc-ccCCCCCCEEEccCCcccc
Q 044980          231 SSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA-LGKLSSLRNLDFSLNMLNG  286 (313)
Q Consensus       231 ~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~L~~L~l~~n~l~~  286 (313)
                      ++|.+++.   .+..++     +|+.|++++|++++. +..+++|+.|++++|++++
T Consensus       199 ~~N~l~~~---~l~~l~-----~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          199 DTNNITKL---DLNQNI-----QLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             CSSCCSCC---CCTTCT-----TCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC
T ss_pred             cCCcCCee---ccccCC-----CCCEEECcCCcccccCccccCCCCEEEeeCCcCCC
Confidence            55555443   133333     555555555555544 4445555555555555554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=1.9e-23  Score=180.16  Aligned_cols=174  Identities=22%  Similarity=0.199  Sum_probs=98.9

Q ss_pred             CCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccc
Q 044980          123 LLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLL  202 (313)
Q Consensus       123 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L  202 (313)
                      +.+++|++++|.+++..+..+..+++|++|++++|.+++. +.. ..+++|++|++++|.+. .+|..+..+++|+.  |
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~--L  105 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTV--L  105 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCE--E
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCE--E
Confidence            3455555555555544444455555555555555555422 211 44555555555555554 34444455555555  5


Q ss_pred             cccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEE
Q 044980          203 NLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLD  278 (313)
Q Consensus       203 ~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~  278 (313)
                      ++++|  .+....+..+..+++|++|++++|.+.+..+..+..++     +|+.|++++|++++.    +..+++|+.|+
T Consensus       106 ~l~~N--~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  178 (290)
T 1p9a_G          106 DVSFN--RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-----KLEKLSLANNNLTELPAGLLNGLENLDTLL  178 (290)
T ss_dssp             ECCSS--CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-----TCCEEECTTSCCSCCCTTTTTTCTTCCEEE
T ss_pred             ECCCC--cCcccCHHHHcCCCCCCEEECCCCCCCccChhhccccc-----CCCEEECCCCcCCccCHHHhcCcCCCCEEE
Confidence            55555  44444445555566666666666666655555555555     666666666666544    45566677777


Q ss_pred             ccCCccccccCccccCCCCCCEeeCCCCcCc
Q 044980          279 FSLNMLNGSIPLSLGQISHLEYLDLSNNKFV  309 (313)
Q Consensus       279 l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~  309 (313)
                      +++|+++ .+|..+...++|+++++++|.+.
T Consensus       179 L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            7777776 66666666667777777777664

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.91  E-value=2.1e-25  Score=200.10  Aligned_cols=233  Identities=16%  Similarity=0.173  Sum_probs=187.7

Q ss_pred             CCCCcceecCCCCccccccc----ccccCCCCCcEeeccCCCCCCCCCCch-h-------hccCCCCCEEEcCCccCCC-
Q 044980           71 PFGYLKYSDAEDDDHYMRSK----LVVGNLSNLQYLDLSWIDCRLHVDSLS-W-------LSSLLLLEHIDLGQVHLGK-  137 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~L~~n~~~~~~~~~~-~-------~~~l~~L~~L~l~~n~l~~-  137 (313)
                      .+++|+.|++++|.+....+    ..+.++++|++|+|++|.+....+.+| .       +..+++|++|++++|.+++ 
T Consensus        30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  109 (386)
T 2ca6_A           30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  109 (386)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence            56789999999999987644    447789999999999987533333444 2       4688999999999999988 


Q ss_pred             ---CCchhhhhcCccCeeeccCcccCcCCCCC----CCCC---------CCCCEEEccCCCCC-CCCc---hhhhcCccc
Q 044980          138 ---ASDCWIYSLRHLFFIVLSYNQFQGKIPST----LGNL---------TSLKQIDLSHNQFN-FTSP---GWLSKLNEL  197 (313)
Q Consensus       138 ---~~~~~~~~l~~L~~L~L~~n~~~~~~~~~----~~~l---------~~L~~L~l~~n~l~-~~~p---~~~~~l~~L  197 (313)
                         .++..+..+++|++|++++|.++...+..    +..+         ++|++|++++|.++ +.++   ..+..+++|
T Consensus       110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  189 (386)
T 2ca6_A          110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  189 (386)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence               45667889999999999999987433332    3333         89999999999997 4445   467788999


Q ss_pred             ccccccccccccccc--c---ccccccccCCCcCEEEccCCCCC----CCcchhhhhhccccccCccEEEccccccccc-
Q 044980          198 SSFLLNLVSCMVRFH--Q---LIPTSFIRLCKLTSIDFSSVKLS----QDISQVLDIFSAYGTYALVSLILSHCQISAA-  267 (313)
Q Consensus       198 ~~~~L~l~~n~~~~~--~---~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~-  267 (313)
                      +.  |++++|  .+.  +   .++..+..+++|+.|++++|.+.    ..+|..+..++     +|+.|+|++|.+++. 
T Consensus       190 ~~--L~L~~n--~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~-----~L~~L~L~~n~i~~~~  260 (386)
T 2ca6_A          190 HT--VKMVQN--GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP-----NLRELGLNDCLLSARG  260 (386)
T ss_dssp             CE--EECCSS--CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT-----TCCEEECTTCCCCHHH
T ss_pred             CE--EECcCC--CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC-----CcCEEECCCCCCchhh
Confidence            99  999998  444  2   35557889999999999999996    45666777777     999999999999865 


Q ss_pred             -------c--cCCCCCCEEEccCCcccc----ccCccc-cCCCCCCEeeCCCCcCcccc
Q 044980          268 -------L--GKLSSLRNLDFSLNMLNG----SIPLSL-GQISHLEYLDLSNNKFVTKK  312 (313)
Q Consensus       268 -------~--~~~~~L~~L~l~~n~l~~----~ip~~l-~~l~~L~~L~l~~n~l~~~~  312 (313)
                             +  ..+++|+.|+|++|.+++    .+|..+ .++++|++|++++|++++..
T Consensus       261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence                   3  448999999999999997    488877 56899999999999998753

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1.1e-23  Score=180.46  Aligned_cols=186  Identities=21%  Similarity=0.200  Sum_probs=142.3

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF  150 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  150 (313)
                      ++++|+.|++++|.+.+..+..+.++++|++|++++|.+.  ......+.++++|++|++++|.+.+..+..+..+++|+
T Consensus        50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  127 (276)
T 2z62_A           50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ--SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK  127 (276)
T ss_dssp             TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC--EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred             cccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC--ccChhhhcCCccccEEECCCCCccccCchhcccCCCCC
Confidence            6889999999999999877778999999999999999962  11223688999999999999999987776788999999


Q ss_pred             eeeccCcccCc-CCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccc--cccccccccccccccccccccCCCcCE
Q 044980          151 FIVLSYNQFQG-KIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSF--LLNLVSCMVRFHQLIPTSFIRLCKLTS  227 (313)
Q Consensus       151 ~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~--~L~l~~n~~~~~~~~~~~~~~~~~L~~  227 (313)
                      +|++++|.+++ .+|..+..+++|++|++++|.+++..+..+..+..++.+  .+++++|  .+....+..+. ..+|+.
T Consensus       128 ~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n--~l~~~~~~~~~-~~~L~~  204 (276)
T 2z62_A          128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN--PMNFIQPGAFK-EIRLKE  204 (276)
T ss_dssp             EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS--CCCEECTTSSC-SCCEEE
T ss_pred             EEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC--cccccCccccC-CCcccE
Confidence            99999999986 368899999999999999999997777777777766631  1566666  44443333333 336777


Q ss_pred             EEccCCCCCCCcchhhhhhccccccCccEEEcccccccc
Q 044980          228 IDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA  266 (313)
Q Consensus       228 L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~  266 (313)
                      |++++|.+++..+..+..++     +|+.|++++|.+.+
T Consensus       205 L~L~~n~l~~~~~~~~~~l~-----~L~~L~l~~N~~~c  238 (276)
T 2z62_A          205 LALDTNQLKSVPDGIFDRLT-----SLQKIWLHTNPWDC  238 (276)
T ss_dssp             EECCSSCCSCCCTTTTTTCC-----SCCEEECCSSCBCC
T ss_pred             EECCCCceeecCHhHhcccc-----cccEEEccCCcccc
Confidence            77777777655544455555     66666666666654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.91  E-value=5.5e-23  Score=188.94  Aligned_cols=220  Identities=25%  Similarity=0.316  Sum_probs=129.6

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCC-----------------CCchhhccCCCCCEEEcCCc
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHV-----------------DSLSWLSSLLLLEHIDLGQV  133 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~-----------------~~~~~~~~l~~L~~L~l~~n  133 (313)
                      .+++|+.|++++|.+.+..+  +.++++|++|++++|.+....                 ..++.+.++++|++|++++|
T Consensus       110 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n  187 (466)
T 1o6v_A          110 NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN  187 (466)
T ss_dssp             TCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCC
Confidence            56788888888887776432  667777777777776642110                 01122445566666666666


Q ss_pred             cCCCCCchhhhhcCccCeeeccCcccCcCCC--------------------CCCCCCCCCCEEEccCCCCCCCCchhhhc
Q 044980          134 HLGKASDCWIYSLRHLFFIVLSYNQFQGKIP--------------------STLGNLTSLKQIDLSHNQFNFTSPGWLSK  193 (313)
Q Consensus       134 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~--------------------~~~~~l~~L~~L~l~~n~l~~~~p~~~~~  193 (313)
                      .+.+..  .+..+++|++|++++|.+.+..|                    ..+..+++|++|++++|.+.+..+  +..
T Consensus       188 ~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~  263 (466)
T 1o6v_A          188 KVSDIS--VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSG  263 (466)
T ss_dssp             CCCCCG--GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred             cCCCCh--hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhc
Confidence            665432  25555666666666666553322                    123344444444554444443322  444


Q ss_pred             CcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc--ccCC
Q 044980          194 LNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--LGKL  271 (313)
Q Consensus       194 l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~  271 (313)
                      +++|+.  |++++|  .+.+..+  +..+++|+.|++++|.+.+..+  +..++     +|+.|++++|++++.  +..+
T Consensus       264 l~~L~~--L~l~~n--~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~-----~L~~L~L~~n~l~~~~~~~~l  330 (466)
T 1o6v_A          264 LTKLTE--LKLGAN--QISNISP--LAGLTALTNLELNENQLEDISP--ISNLK-----NLTYLTLYFNNISDISPVSSL  330 (466)
T ss_dssp             CTTCSE--EECCSS--CCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCT-----TCSEEECCSSCCSCCGGGGGC
T ss_pred             CCCCCE--EECCCC--ccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCC-----CCCEEECcCCcCCCchhhccC
Confidence            555555  555554  3333222  5556666666666666665433  44444     777777777777665  5667


Q ss_pred             CCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCccc
Q 044980          272 SSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTK  311 (313)
Q Consensus       272 ~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~~  311 (313)
                      ++|+.|++++|.+++.  ..+..+++|++|++++|++++.
T Consensus       331 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~  368 (466)
T 1o6v_A          331 TKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDL  368 (466)
T ss_dssp             TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBC
T ss_pred             ccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCcc
Confidence            7777777777777743  3567778888888888887764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.91  E-value=3.6e-24  Score=201.32  Aligned_cols=228  Identities=20%  Similarity=0.196  Sum_probs=181.0

Q ss_pred             CCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCC------------------CCCCchhhccCCCCCEEEcCCc
Q 044980           72 FGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRL------------------HVDSLSWLSSLLLLEHIDLGQV  133 (313)
Q Consensus        72 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~------------------~~~~~~~~~~l~~L~~L~l~~n  133 (313)
                      +++|+.|++++|.+. .+|..+..+ .|++|++++|.+..                  ....++ ...+++|++|++++|
T Consensus       281 l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~L~~L~l~~n  357 (570)
T 2z63_A          281 LTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS-EVDLPSLEFLDLSRN  357 (570)
T ss_dssp             GTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCC-CCBCTTCCEEECCSS
T ss_pred             cCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccc-cccCCCCCEEeCcCC
Confidence            456666666666555 345445444 55555555554310                  011111 256789999999999


Q ss_pred             cCCCCC--chhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCc-hhhhcCcccccccccccccccc
Q 044980          134 HLGKAS--DCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSP-GWLSKLNELSSFLLNLVSCMVR  210 (313)
Q Consensus       134 ~l~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~~~L~l~~n~~~  210 (313)
                      .+++..  +..+..+++|++|++++|.+.+. +..+..+++|++|++++|.+.+..| ..+..+++|++  +++++|  .
T Consensus       358 ~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~--L~l~~n--~  432 (570)
T 2z63_A          358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY--LDISHT--H  432 (570)
T ss_dssp             CCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE--EECTTS--C
T ss_pred             ccCccccccccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCCCCE--EeCcCC--c
Confidence            887654  66788999999999999999854 4448899999999999999887665 56888999999  999998  7


Q ss_pred             cccccccccccCCCcCEEEccCCCCC-CCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccc
Q 044980          211 FHQLIPTSFIRLCKLTSIDFSSVKLS-QDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLN  285 (313)
Q Consensus       211 ~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~  285 (313)
                      +.+..|..+..+++|++|++++|.+. +.+|..+..++     +|+.|++++|++++.    +..+++|++|++++|+++
T Consensus       433 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  507 (570)
T 2z63_A          433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-----NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK  507 (570)
T ss_dssp             CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-----TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             ccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc-----CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC
Confidence            77778889999999999999999997 56787788888     999999999999876    778899999999999999


Q ss_pred             cccCccccCCCCCCEeeCCCCcCcccc
Q 044980          286 GSIPLSLGQISHLEYLDLSNNKFVTKK  312 (313)
Q Consensus       286 ~~ip~~l~~l~~L~~L~l~~n~l~~~~  312 (313)
                      +..|..+..+++|++|++++|+++++.
T Consensus       508 ~~~~~~~~~l~~L~~L~l~~N~~~~~~  534 (570)
T 2z63_A          508 SVPDGIFDRLTSLQKIWLHTNPWDCSC  534 (570)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             CCCHHHhhcccCCcEEEecCCcccCCC
Confidence            877778899999999999999998864

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.91  E-value=3.3e-24  Score=190.06  Aligned_cols=207  Identities=18%  Similarity=0.200  Sum_probs=173.8

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCc-hhhhhcCc
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASD-CWIYSLRH  148 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~  148 (313)
                      ++++|+.|++++|.+++..+..+.++++|++|++++|.+   ....+ .+.++++|++|++++|.+....+ ..+..+++
T Consensus        74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~  150 (353)
T 2z80_A           74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL---SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK  150 (353)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC---SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTT
T ss_pred             cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC---CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCC
Confidence            689999999999999988888899999999999999996   23333 48899999999999999987654 46889999


Q ss_pred             cCeeeccCc-ccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCE
Q 044980          149 LFFIVLSYN-QFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTS  227 (313)
Q Consensus       149 L~~L~L~~n-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~  227 (313)
                      |++|++++| .+....+..+..+++|++|++++|.+++..|..+..+++|++  +++++|  .+....+..+..+++|+.
T Consensus       151 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~--L~l~~n--~l~~~~~~~~~~~~~L~~  226 (353)
T 2z80_A          151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH--LILHMK--QHILLLEIFVDVTSSVEC  226 (353)
T ss_dssp             CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE--EEEECS--CSTTHHHHHHHHTTTEEE
T ss_pred             CcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCe--ecCCCC--ccccchhhhhhhcccccE
Confidence            999999999 466666778999999999999999999888999999999999  999998  444433334556889999


Q ss_pred             EEccCCCCCCCc-------------------------------chhhhhhccccccCccEEEccccccccc----ccCCC
Q 044980          228 IDFSSVKLSQDI-------------------------------SQVLDIFSAYGTYALVSLILSHCQISAA----LGKLS  272 (313)
Q Consensus       228 L~l~~n~l~~~~-------------------------------~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~  272 (313)
                      |++++|.+.+..                               |..+..++     +|+.|++++|+++..    +..++
T Consensus       227 L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~-----~L~~L~Ls~N~l~~i~~~~~~~l~  301 (353)
T 2z80_A          227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS-----GLLELEFSRNQLKSVPDGIFDRLT  301 (353)
T ss_dssp             EEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCT-----TCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             EECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhccc-----CCCEEECCCCCCCccCHHHHhcCC
Confidence            999999988743                               33445555     999999999999866    57899


Q ss_pred             CCCEEEccCCccccccC
Q 044980          273 SLRNLDFSLNMLNGSIP  289 (313)
Q Consensus       273 ~L~~L~l~~n~l~~~ip  289 (313)
                      +|++|++++|.+.+..|
T Consensus       302 ~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          302 SLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             TCCEEECCSSCBCCCHH
T ss_pred             CCCEEEeeCCCccCcCC
Confidence            99999999999997654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.90  E-value=6.4e-24  Score=185.49  Aligned_cols=214  Identities=19%  Similarity=0.109  Sum_probs=179.1

Q ss_pred             CcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCee
Q 044980           74 YLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI  152 (313)
Q Consensus        74 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  152 (313)
                      .++..+++.+.+....+..+..+++|++|++++|.+   ....+ .+.++++|++|++++|.+++..+  +..+++|++|
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L   85 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL---SQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTL   85 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCC---CCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEE
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCcc---CcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEE
Confidence            355667777777655555566788999999999996   33343 78999999999999999987665  8899999999


Q ss_pred             eccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccC
Q 044980          153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSS  232 (313)
Q Consensus       153 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~  232 (313)
                      ++++|.+++. +    ..++|++|++++|.+++..+.   .+++|+.  +++++|  .+....+..++.+++|++|++++
T Consensus        86 ~Ls~n~l~~l-~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~--L~l~~N--~l~~~~~~~~~~l~~L~~L~Ls~  153 (317)
T 3o53_A           86 DLNNNYVQEL-L----VGPSIETLHAANNNISRVSCS---RGQGKKN--IYLANN--KITMLRDLDEGCRSRVQYLDLKL  153 (317)
T ss_dssp             ECCSSEEEEE-E----ECTTCCEEECCSSCCSEEEEC---CCSSCEE--EECCSS--CCCSGGGBCTGGGSSEEEEECTT
T ss_pred             ECcCCccccc-c----CCCCcCEEECCCCccCCcCcc---ccCCCCE--EECCCC--CCCCccchhhhccCCCCEEECCC
Confidence            9999999843 3    348999999999999865443   3678999  999999  77777788899999999999999


Q ss_pred             CCCCCCcchhhh-hhccccccCccEEEccccccccc--ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCc
Q 044980          233 VKLSQDISQVLD-IFSAYGTYALVSLILSHCQISAA--LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFV  309 (313)
Q Consensus       233 n~l~~~~~~~l~-~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~  309 (313)
                      |.+.+..+..+. .++     +|+.|++++|.+++.  ...+++|++|++++|.++ .+|..+..+++|++|++++|+++
T Consensus       154 N~l~~~~~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~  227 (317)
T 3o53_A          154 NEIDTVNFAELAASSD-----TLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV  227 (317)
T ss_dssp             SCCCEEEGGGGGGGTT-----TCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC
T ss_pred             CCCCcccHHHHhhccC-----cCCEEECCCCcCcccccccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc
Confidence            999987766654 566     899999999999887  556899999999999999 57777999999999999999987


Q ss_pred             c
Q 044980          310 T  310 (313)
Q Consensus       310 ~  310 (313)
                      +
T Consensus       228 ~  228 (317)
T 3o53_A          228 L  228 (317)
T ss_dssp             E
T ss_pred             c
Confidence            5

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.90  E-value=3.3e-23  Score=194.75  Aligned_cols=161  Identities=20%  Similarity=0.158  Sum_probs=102.8

Q ss_pred             CCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCe
Q 044980           73 GYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFF  151 (313)
Q Consensus        73 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  151 (313)
                      ++++.|++++|.+++..+.+|.++++|++|++++|.+   .+..+ .+.++++|++|++++|.+++..|..+..+++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i---~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI---QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK  104 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCC---CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcC---CccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence            3566677777777666566667777777777777764   11112 4666777777777777766665566667777777


Q ss_pred             eeccCcccCcCCCCCCCCCCCCCEEEccCCCCCC-CCchhhhcCcccccccccccccccccccccccccccCCCc----C
Q 044980          152 IVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNF-TSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKL----T  226 (313)
Q Consensus       152 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L----~  226 (313)
                      |++++|.+++..+..+.++++|++|++++|.+.+ .+|..++++++|++  |++++|  .+....+..++.+.+|    +
T Consensus       105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~--L~l~~n--~l~~~~~~~~~~l~~L~~~~~  180 (570)
T 2z63_A          105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH--LDLSSN--KIQSIYCTDLRVLHQMPLLNL  180 (570)
T ss_dssp             EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE--EECTTS--CCCEECGGGGHHHHTCTTCCC
T ss_pred             ccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCE--EeCcCC--ccceecHHHccchhccchhhh
Confidence            7777777664444456667777777777777665 35666777777777  666666  4555555556666555    5


Q ss_pred             EEEccCCCCCCCcc
Q 044980          227 SIDFSSVKLSQDIS  240 (313)
Q Consensus       227 ~L~l~~n~l~~~~~  240 (313)
                      .+++++|.+.+..+
T Consensus       181 ~L~l~~n~l~~~~~  194 (570)
T 2z63_A          181 SLDLSLNPMNFIQP  194 (570)
T ss_dssp             EEECTTCCCCEECT
T ss_pred             hcccCCCCceecCH
Confidence            66666666654433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.7e-22  Score=172.51  Aligned_cols=203  Identities=18%  Similarity=0.164  Sum_probs=166.1

Q ss_pred             ccCceEecCCCCCEEEEecCCCCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEE
Q 044980           50 KWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHI  128 (313)
Q Consensus        50 ~~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L  128 (313)
                      .|..+.|...  .++.+.. .-.++++.|++++|.+.+..+..|.++++|++|++++|.+.   ...+ .+.++++|++|
T Consensus        17 ~~~~l~~~~~--~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~i~~~~~~~l~~L~~L   90 (270)
T 2o6q_A           17 NKNSVDCSSK--KLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ---TLPAGIFKELKNLETL   90 (270)
T ss_dssp             TTTEEECTTS--CCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS---CCCTTTTSSCTTCCEE
T ss_pred             CCCEEEccCC--CCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC---eeChhhhcCCCCCCEE
Confidence            4677888642  2332221 12357999999999998777778999999999999999862   2222 46789999999


Q ss_pred             EcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccc
Q 044980          129 DLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCM  208 (313)
Q Consensus       129 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~  208 (313)
                      ++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.  |++++| 
T Consensus        91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~--L~L~~n-  167 (270)
T 2o6q_A           91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE--LRLYNN-  167 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE--EECCSS-
T ss_pred             ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccce--eEecCC-
Confidence            99999999877777889999999999999999777778889999999999999998766667889999999  999998 


Q ss_pred             cccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc
Q 044980          209 VRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA  267 (313)
Q Consensus       209 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~  267 (313)
                       .+....+..+..+++|++|++++|.+.+..+..+..++     +|+.|++++|.+...
T Consensus       168 -~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          168 -QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE-----KLKMLQLQENPWDCT  220 (270)
T ss_dssp             -CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-----TCCEEECCSSCBCCS
T ss_pred             -cCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcccc-----CCCEEEecCCCeeCC
Confidence             67766667788999999999999999977666677777     899999999987653

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.90  E-value=1.8e-22  Score=184.73  Aligned_cols=207  Identities=21%  Similarity=0.198  Sum_probs=122.2

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF  150 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  150 (313)
                      .+++|+.|++++|.+++. +  ++++++|++|++++|.+.    .++ +..+++|++|++++|.+++. +  +..+++|+
T Consensus        83 ~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~----~l~-~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~  151 (457)
T 3bz5_A           83 QNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLT----KLD-VSQNPLLTYLNCARNTLTEI-D--VSHNTQLT  151 (457)
T ss_dssp             TCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCS----CCC-CTTCTTCCEEECTTSCCSCC-C--CTTCTTCC
T ss_pred             cCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCC----eec-CCCCCcCCEEECCCCcccee-c--cccCCcCC
Confidence            456666677766666653 2  566666777777666641    123 55666677777776666653 2  55666667


Q ss_pred             eeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEc
Q 044980          151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDF  230 (313)
Q Consensus       151 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l  230 (313)
                      +|++++|...+.+  .+..+++|++|++++|.+++ +|  +..+++|+.  +++++|  .+.+.   .++.+++|+.|++
T Consensus       152 ~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~--L~l~~N--~l~~~---~l~~l~~L~~L~L  219 (457)
T 3bz5_A          152 ELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNR--LNCDTN--NITKL---DLNQNIQLTFLDC  219 (457)
T ss_dssp             EEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCE--EECCSS--CCSCC---CCTTCTTCSEEEC
T ss_pred             EEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCE--EECcCC--cCCee---ccccCCCCCEEEC
Confidence            7777666544444  35566667777777766664 33  556666666  666666  33332   2556666677777


Q ss_pred             cCCCCCCCcchhhhhhccccccCccEEEccccccccc-ccCCCCC----------CEEEccCCccccccCccccCCCCCC
Q 044980          231 SSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA-LGKLSSL----------RNLDFSLNMLNGSIPLSLGQISHLE  299 (313)
Q Consensus       231 ~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~L----------~~L~l~~n~l~~~ip~~l~~l~~L~  299 (313)
                      ++|.+.+ +|  +..++     +|+.|++++|++++. +..+++|          +.|++++|.+.+.+|  +..+++|+
T Consensus       220 s~N~l~~-ip--~~~l~-----~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~  289 (457)
T 3bz5_A          220 SSNKLTE-ID--VTPLT-----QLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIK  289 (457)
T ss_dssp             CSSCCSC-CC--CTTCT-----TCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCC
T ss_pred             cCCcccc-cC--ccccC-----CCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCC
Confidence            7776665 33  44444     666777776666655 3333333          334444444444444  34556666


Q ss_pred             EeeCCCCcCcc
Q 044980          300 YLDLSNNKFVT  310 (313)
Q Consensus       300 ~L~l~~n~l~~  310 (313)
                      .|++++|...|
T Consensus       290 ~L~Ls~n~~l~  300 (457)
T 3bz5_A          290 ELDVTHNTQLY  300 (457)
T ss_dssp             CCCCTTCTTCC
T ss_pred             EEECCCCcccc
Confidence            77776666544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.90  E-value=5e-23  Score=179.12  Aligned_cols=190  Identities=23%  Similarity=0.247  Sum_probs=124.9

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF  150 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  150 (313)
                      .+++|+.|+++++.+.. ++ .+..+++|++|++++|.+    ..++.+..+++|++|++++|.+.+. + .+..+++|+
T Consensus        39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i----~~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~  110 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQI----TDLAPLKNLTKITELELSGNPLKNV-S-AIAGLQSIK  110 (308)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCC----CCCGGGTTCCSCCEEECCSCCCSCC-G-GGTTCTTCC
T ss_pred             HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcC----CCChhHccCCCCCEEEccCCcCCCc-h-hhcCCCCCC
Confidence            45667777777777664 33 466777777777777775    2233366777777777777777654 2 366777777


Q ss_pred             eeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEc
Q 044980          151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDF  230 (313)
Q Consensus       151 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l  230 (313)
                      +|++++|.+++ ++. +..+++|++|++++|.+++..+  +..+++|+.  |++++|  .+... +. +..+++|+.|++
T Consensus       111 ~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~--L~l~~n--~l~~~-~~-l~~l~~L~~L~l  180 (308)
T 1h6u_A          111 TLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQY--LSIGNA--QVSDL-TP-LANLSKLTTLKA  180 (308)
T ss_dssp             EEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCE--EECCSS--CCCCC-GG-GTTCTTCCEEEC
T ss_pred             EEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccE--EEccCC--cCCCC-hh-hcCCCCCCEEEC
Confidence            77777777764 333 6677777777777777764332  666777777  777776  44432 22 666777777777


Q ss_pred             cCCCCCCCcchhhhhhccccccCccEEEccccccccc--ccCCCCCCEEEccCCccc
Q 044980          231 SSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--LGKLSSLRNLDFSLNMLN  285 (313)
Q Consensus       231 ~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~  285 (313)
                      ++|.+.+..+  +..++     +|+.|++++|++++.  +..+++|+.|++++|.++
T Consensus       181 ~~n~l~~~~~--l~~l~-----~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          181 DDNKISDISP--LASLP-----NLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CSSCCCCCGG--GGGCT-----TCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEE
T ss_pred             CCCccCcChh--hcCCC-----CCCEEEccCCccCccccccCCCCCCEEEccCCeee
Confidence            7777765433  45555     677777777777665  666677777777777776

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=2.5e-23  Score=192.06  Aligned_cols=193  Identities=20%  Similarity=0.124  Sum_probs=167.2

Q ss_pred             CCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCC
Q 044980           95 NLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSL  173 (313)
Q Consensus        95 ~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L  173 (313)
                      .+++|++|+|++|.+   ....| .+..+++|++|++++|.+++..|  +..+++|++|++++|.+++. |    ..++|
T Consensus        32 ~~~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L  101 (487)
T 3oja_A           32 SAWNVKELDLSGNPL---SQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSI  101 (487)
T ss_dssp             TGGGCCEEECCSSCC---CCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTC
T ss_pred             cCCCccEEEeeCCcC---CCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCc
Confidence            445899999999996   33333 78999999999999999988766  88999999999999999843 3    23899


Q ss_pred             CEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhh-hhcccccc
Q 044980          174 KQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLD-IFSAYGTY  252 (313)
Q Consensus       174 ~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-~~~~~~~~  252 (313)
                      ++|++++|.+++..+.   .+++|+.  |++++|  .+.+..|..++.+++|+.|++++|.+.+..|..+. .++     
T Consensus       102 ~~L~L~~N~l~~~~~~---~l~~L~~--L~L~~N--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~-----  169 (487)
T 3oja_A          102 ETLHAANNNISRVSCS---RGQGKKN--IYLANN--KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD-----  169 (487)
T ss_dssp             CEEECCSSCCCCEEEC---CCSSCEE--EECCSS--CCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTT-----
T ss_pred             CEEECcCCcCCCCCcc---ccCCCCE--EECCCC--CCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCC-----
Confidence            9999999999876553   4678999  999999  78888888999999999999999999998887775 567     


Q ss_pred             CccEEEccccccccc--ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCcc
Q 044980          253 ALVSLILSHCQISAA--LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       253 ~L~~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~  310 (313)
                      +|+.|+|++|.+++.  ...+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+++
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~  228 (487)
T 3oja_A          170 TLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL  228 (487)
T ss_dssp             TCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE
T ss_pred             cccEEecCCCccccccccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc
Confidence            999999999999987  5568999999999999995 66668999999999999999986

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=3.4e-22  Score=168.71  Aligned_cols=190  Identities=21%  Similarity=0.228  Sum_probs=108.9

Q ss_pred             CCcccCceEecCCCCCEEEEecCCCCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCC
Q 044980           47 DCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLL  125 (313)
Q Consensus        47 ~~c~~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L  125 (313)
                      +|+.|.|..|..   .            .+.++++++.++ .+|..+.  +.|++|+|++|.+   .+..+ .+.++++|
T Consensus         3 ~Cp~~~gC~C~~---~------------~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l---~~~~~~~~~~l~~L   61 (251)
T 3m19_A            3 TCETVTGCTCNE---G------------KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGL---ATLSDATFRGLTKL   61 (251)
T ss_dssp             -CHHHHSSEEEG---G------------GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCC---CCCCTTTTTTCTTC
T ss_pred             cCCCCCceEcCC---C------------CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCc---CccCHhHhcCcccC
Confidence            577888888842   1            122333334444 2444333  4566666666664   12222 45566666


Q ss_pred             CEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccc
Q 044980          126 EHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLV  205 (313)
Q Consensus       126 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~  205 (313)
                      ++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++  |+++
T Consensus        62 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~--L~Ls  139 (251)
T 3m19_A           62 TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE--LRLN  139 (251)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE--EECC
T ss_pred             CEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccE--EECc
Confidence            66666666666655555566666666666666666444455566666666666666666544444556666666  6666


Q ss_pred             ccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEcccccccc
Q 044980          206 SCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA  266 (313)
Q Consensus       206 ~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~  266 (313)
                      +|  .+....+..++.+++|++|++++|.+.+..+..+..++     +|+.|++++|.+.+
T Consensus       140 ~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~l~~N~~~c  193 (251)
T 3m19_A          140 TN--QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG-----KLQTITLFGNQFDC  193 (251)
T ss_dssp             SS--CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-----TCCEEECCSCCBCT
T ss_pred             CC--cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCC-----CCCEEEeeCCceeC
Confidence            66  44444444566666666666666666655554555555     66666666666544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=4.3e-23  Score=179.69  Aligned_cols=226  Identities=19%  Similarity=0.133  Sum_probs=169.3

Q ss_pred             cceecCCCCcccccccc---cccCCCCCcEeeccCCCCCCCCCCch-hh--ccCCCCCEEEcCCccCCCCCc----hhhh
Q 044980           75 LKYSDAEDDDHYMRSKL---VVGNLSNLQYLDLSWIDCRLHVDSLS-WL--SSLLLLEHIDLGQVHLGKASD----CWIY  144 (313)
Q Consensus        75 L~~L~l~~n~~~~~~~~---~l~~l~~L~~L~L~~n~~~~~~~~~~-~~--~~l~~L~~L~l~~n~l~~~~~----~~~~  144 (313)
                      ++.+.+..+.+....-.   .+..+++|++|++++|.+   .+..| .+  ..+++|++|++++|.+++..+    ..+.
T Consensus        66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l---~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKI---TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCC---BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEe---ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            45555555555422111   122356799999999986   33343 44  789999999999999987554    2345


Q ss_pred             hcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCC--Cc--hhhhcCcccccccccccccccccccc--ccc-
Q 044980          145 SLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFT--SP--GWLSKLNELSSFLLNLVSCMVRFHQL--IPT-  217 (313)
Q Consensus       145 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~p--~~~~~l~~L~~~~L~l~~n~~~~~~~--~~~-  217 (313)
                      .+++|++|++++|.+.+..+..+..+++|++|++++|++.+.  ++  ..+..+++|++  |++++|  .+...  .+. 
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~--L~Ls~N--~l~~l~~~~~~  218 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQN--LALRNT--GMETPTGVCAA  218 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCS--CBCCSS--CCCCHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCE--EECCCC--CCCchHHHHHH
Confidence            688999999999999988888899999999999999997642  21  22467889999  999998  44321  222 


Q ss_pred             ccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc-ccCCCCCCEEEccCCccccccCccccCCC
Q 044980          218 SFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA-LGKLSSLRNLDFSLNMLNGSIPLSLGQIS  296 (313)
Q Consensus       218 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~L~~L~l~~n~l~~~ip~~l~~l~  296 (313)
                      .++.+++|++|++++|.+.+..|..+..+.  ..++|+.|++++|+++.. ..-.++|++|++++|++++ +|. +..++
T Consensus       219 l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~--~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~-~~~-~~~l~  294 (310)
T 4glp_A          219 LAAAGVQPHSLDLSHNSLRATVNPSAPRCM--WSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNR-APQ-PDELP  294 (310)
T ss_dssp             HHHHTCCCSSEECTTSCCCCCCCSCCSSCC--CCTTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCS-CCC-TTSCC
T ss_pred             HHhcCCCCCEEECCCCCCCccchhhHHhcc--CcCcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCC-Cch-hhhCC
Confidence            357789999999999999988777666552  112899999999999865 2224799999999999994 454 67889


Q ss_pred             CCCEeeCCCCcCccc
Q 044980          297 HLEYLDLSNNKFVTK  311 (313)
Q Consensus       297 ~L~~L~l~~n~l~~~  311 (313)
                      +|++|++++|+++..
T Consensus       295 ~L~~L~L~~N~l~~~  309 (310)
T 4glp_A          295 EVDNLTLDGNPFLVP  309 (310)
T ss_dssp             CCSCEECSSTTTSCC
T ss_pred             CccEEECcCCCCCCC
Confidence            999999999999753

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=5.3e-22  Score=171.08  Aligned_cols=178  Identities=19%  Similarity=0.148  Sum_probs=96.9

Q ss_pred             CCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCee
Q 044980           73 GYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI  152 (313)
Q Consensus        73 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  152 (313)
                      ++++.|++++|.+.+..+..+.++++|++|++++|.+    ..++....+++|++|++++|.+.. +|..+..+++|++|
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L  105 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL----TKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVL  105 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC----CEEECCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEE
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc----CcccCCCCCCcCCEEECCCCcCCc-CchhhccCCCCCEE
Confidence            4555666666666555555555666666666666654    122323455566666666665553 23344555556666


Q ss_pred             eccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccC
Q 044980          153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSS  232 (313)
Q Consensus       153 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~  232 (313)
                      ++++|++++..+..|..+++|++|++++|.+++..+..+..+++|+.  |++++|  .+....+..+..+++|+.|++++
T Consensus       106 ~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~--L~L~~N--~l~~l~~~~~~~l~~L~~L~L~~  181 (290)
T 1p9a_G          106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK--LSLANN--NLTELPAGLLNGLENLDTLLLQE  181 (290)
T ss_dssp             ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE--EECTTS--CCSCCCTTTTTTCTTCCEEECCS
T ss_pred             ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE--EECCCC--cCCccCHHHhcCcCCCCEEECCC
Confidence            66666665444455555666666666666665444444555556666  555555  44443334445555666666666


Q ss_pred             CCCCCCcchhhhhhccccccCccEEEccccccc
Q 044980          233 VKLSQDISQVLDIFSAYGTYALVSLILSHCQIS  265 (313)
Q Consensus       233 n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~  265 (313)
                      |.+. .+|..+....     +|+.+++++|.+.
T Consensus       182 N~l~-~ip~~~~~~~-----~L~~l~L~~Np~~  208 (290)
T 1p9a_G          182 NSLY-TIPKGFFGSH-----LLPFAFLHGNPWL  208 (290)
T ss_dssp             SCCC-CCCTTTTTTC-----CCSEEECCSCCBC
T ss_pred             CcCC-ccChhhcccc-----cCCeEEeCCCCcc
Confidence            6655 3344444444     5556666655554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=2.8e-24  Score=189.03  Aligned_cols=251  Identities=20%  Similarity=0.169  Sum_probs=190.2

Q ss_pred             CCcccCceEecCCCCCEEEEecCC---------CC--CCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCC
Q 044980           47 DCCKWVGNFCNNLTGHILELNLEN---------PF--GYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDS  115 (313)
Q Consensus        47 ~~c~~~~v~c~~~~~~v~~l~l~~---------~l--~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~  115 (313)
                      -|.+|.++.++  ...++.+++++         .+  ++++.|++++|.+.+..+. +.++++|++|++++|.+  ....
T Consensus        35 vc~~W~~~~~~--~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l--~~~~  109 (336)
T 2ast_B           35 VCKRWYRLASD--ESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVI--EVST  109 (336)
T ss_dssp             SCHHHHHHHTC--STTSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEE--CHHH
T ss_pred             HHHHHHHHhcC--chhheeeccccccCCHHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCc--CHHH
Confidence            44567777664  23455666665         22  7899999999998887665 56789999999999985  2222


Q ss_pred             ch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCc-ccCcC-CCCCCCCCCCCCEEEccCC-CCCCC-Cchh
Q 044980          116 LS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYN-QFQGK-IPSTLGNLTSLKQIDLSHN-QFNFT-SPGW  190 (313)
Q Consensus       116 ~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~~~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~p~~  190 (313)
                      ++ .+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..
T Consensus       110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  189 (336)
T 2ast_B          110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA  189 (336)
T ss_dssp             HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred             HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH
Confidence            44 5778999999999999988877888888999999999999 67642 5666778899999999999 88754 5677


Q ss_pred             hhcCc-ccccccccccccccccc-cccccccccCCCcCEEEccCCC-CCCCcchhhhhhccccccCccEEEccccc-ccc
Q 044980          191 LSKLN-ELSSFLLNLVSCMVRFH-QLIPTSFIRLCKLTSIDFSSVK-LSQDISQVLDIFSAYGTYALVSLILSHCQ-ISA  266 (313)
Q Consensus       191 ~~~l~-~L~~~~L~l~~n~~~~~-~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~-l~~  266 (313)
                      +..++ +|++  |++++|...+. ..++..+..+++|+.|++++|. +++..+..+..++     +|+.|++++|. ++.
T Consensus       190 ~~~l~~~L~~--L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~-----~L~~L~l~~~~~~~~  262 (336)
T 2ast_B          190 VAHVSETITQ--LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN-----YLQHLSLSRCYDIIP  262 (336)
T ss_dssp             HHHSCTTCCE--EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT-----TCCEEECTTCTTCCG
T ss_pred             HHhcccCCCE--EEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC-----CCCEeeCCCCCCCCH
Confidence            88888 9999  88888732222 4467778889999999999999 7777777777777     99999999994 544


Q ss_pred             c----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCcccc
Q 044980          267 A----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTKK  312 (313)
Q Consensus       267 ~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~~~  312 (313)
                      .    +..+++|+.|++++| ++...-..+.  .++..|++++|.+++..
T Consensus       263 ~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~  309 (336)
T 2ast_B          263 ETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIA  309 (336)
T ss_dssp             GGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTT
T ss_pred             HHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCcccc
Confidence            3    778899999999998 4432222221  24667778999998754

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=7.9e-23  Score=178.01  Aligned_cols=202  Identities=19%  Similarity=0.112  Sum_probs=168.0

Q ss_pred             CCCcceecCCCCcccccccccc--cCCCCCcEeeccCCCCCCCCCCch--hhccCCCCCEEEcCCccCCCCCchhhhhcC
Q 044980           72 FGYLKYSDAEDDDHYMRSKLVV--GNLSNLQYLDLSWIDCRLHVDSLS--WLSSLLLLEHIDLGQVHLGKASDCWIYSLR  147 (313)
Q Consensus        72 l~~L~~L~l~~n~~~~~~~~~l--~~l~~L~~L~L~~n~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  147 (313)
                      +++|+.|++++|.+.+..|..+  .++++|++|++++|.+......++  .+..+++|++|++++|.+.+..+..+..++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            4679999999999999999888  899999999999999732211122  345799999999999999988888889999


Q ss_pred             ccCeeeccCcccCcC--C--CCCCCCCCCCCEEEccCCCCCCCCch----hhhcCccccccccccccccccccccccccc
Q 044980          148 HLFFIVLSYNQFQGK--I--PSTLGNLTSLKQIDLSHNQFNFTSPG----WLSKLNELSSFLLNLVSCMVRFHQLIPTSF  219 (313)
Q Consensus       148 ~L~~L~L~~n~~~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~p~----~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~  219 (313)
                      +|++|++++|++.+.  +  +..+..+++|++|++++|.++ .++.    .+..+++|++  |++++|  .+.+..|..+
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~--L~Ls~N--~l~~~~p~~~  244 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHS--LDLSHN--SLRATVNPSA  244 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSS--EECTTS--CCCCCCCSCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCE--EECCCC--CCCccchhhH
Confidence            999999999997642  2  233468899999999999997 3333    3578899999  999999  7777778777


Q ss_pred             ccC---CCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc--ccCCCCCCEEEccCCcccc
Q 044980          220 IRL---CKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--LGKLSSLRNLDFSLNMLNG  286 (313)
Q Consensus       220 ~~~---~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~~  286 (313)
                      ..+   ++|++|++++|.++ .+|..+.  +     +|+.|++++|++++.  +..+++|+.|++++|.+++
T Consensus       245 ~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~-----~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          245 PRCMWSSALNSLNLSFAGLE-QVPKGLP--A-----KLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             SSCCCCTTCCCEECCSSCCC-SCCSCCC--S-----CCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTSC
T ss_pred             HhccCcCcCCEEECCCCCCC-chhhhhc--C-----CCCEEECCCCcCCCCchhhhCCCccEEECcCCCCCC
Confidence            776   69999999999999 5565543  4     899999999999985  7788999999999999874

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=1.5e-23  Score=186.47  Aligned_cols=234  Identities=17%  Similarity=0.176  Sum_probs=171.4

Q ss_pred             CCCcceecCCCCccccccc----ccccCCC-CCcEeeccCCCCCCCCCCchhhccC-----CCCCEEEcCCccCCCCCch
Q 044980           72 FGYLKYSDAEDDDHYMRSK----LVVGNLS-NLQYLDLSWIDCRLHVDSLSWLSSL-----LLLEHIDLGQVHLGKASDC  141 (313)
Q Consensus        72 l~~L~~L~l~~n~~~~~~~----~~l~~l~-~L~~L~L~~n~~~~~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~  141 (313)
                      .++|+.|++++|.+++..+    ..+.+++ +|++|+|++|.+  .......+..+     ++|++|++++|.+++..+.
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~   98 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL--GFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD   98 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCG--GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCC--CHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence            4559999999999987766    6677888 899999999986  22223344443     8999999999999887776


Q ss_pred             hhhhc-----CccCeeeccCcccCcCCCCCC----CC-CCCCCEEEccCCCCCCCCch----hhhcCc-ccccccccccc
Q 044980          142 WIYSL-----RHLFFIVLSYNQFQGKIPSTL----GN-LTSLKQIDLSHNQFNFTSPG----WLSKLN-ELSSFLLNLVS  206 (313)
Q Consensus       142 ~~~~l-----~~L~~L~L~~n~~~~~~~~~~----~~-l~~L~~L~l~~n~l~~~~p~----~~~~l~-~L~~~~L~l~~  206 (313)
                      .+...     ++|++|++++|.+++..+..+    .. .++|++|++++|.+++..+.    .+...+ +|++  |++++
T Consensus        99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~--L~Ls~  176 (362)
T 3goz_A           99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS--LNLRG  176 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE--EECTT
T ss_pred             HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE--eeecC
Confidence            55444     789999999999986554333    33 36899999999998865443    344554 8999  99999


Q ss_pred             cccccccccccc----cccC-CCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc--------ccCCCC
Q 044980          207 CMVRFHQLIPTS----FIRL-CKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--------LGKLSS  273 (313)
Q Consensus       207 n~~~~~~~~~~~----~~~~-~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--------~~~~~~  273 (313)
                      |  .+....+..    +..+ ++|++|++++|.+.+.....+...-....++|+.|++++|.+++.        +..+++
T Consensus       177 n--~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~  254 (362)
T 3goz_A          177 N--NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH  254 (362)
T ss_dssp             S--CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTT
T ss_pred             C--CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCC
Confidence            8  555554443    3444 589999999999987543333221111122799999999999875        467789


Q ss_pred             CCEEEccCCcccc-------ccCccccCCCCCCEeeCCCCcCccc
Q 044980          274 LRNLDFSLNMLNG-------SIPLSLGQISHLEYLDLSNNKFVTK  311 (313)
Q Consensus       274 L~~L~l~~n~l~~-------~ip~~l~~l~~L~~L~l~~n~l~~~  311 (313)
                      |++|++++|.+.+       .++..+..+++|++||+++|++.+.
T Consensus       255 L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          255 LQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             ccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            9999999998442       3444677888899999999998764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.88  E-value=9.5e-23  Score=192.47  Aligned_cols=205  Identities=20%  Similarity=0.142  Sum_probs=120.3

Q ss_pred             CCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCee
Q 044980           73 GYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI  152 (313)
Q Consensus        73 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  152 (313)
                      ++|+.|++++|.++. +|.   .+++|++|+|++|.+.    .+|.  .+++|++|++++|.+++..+    .+++|++|
T Consensus        61 ~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~----~lp~--~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L  126 (622)
T 3g06_A           61 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT----SLPV--LPPGLLELSIFSNPLTHLPA----LPSGLCKL  126 (622)
T ss_dssp             TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS----CCCC--CCTTCCEEEECSCCCCCCCC----CCTTCCEE
T ss_pred             CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC----cCCC--CCCCCCEEECcCCcCCCCCC----CCCCcCEE
Confidence            456677777766663 443   3566666666666642    2222  44555566665555554321    33444444


Q ss_pred             eccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCch---hh--------------hcCccccccccccccccccccccc
Q 044980          153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPG---WL--------------SKLNELSSFLLNLVSCMVRFHQLI  215 (313)
Q Consensus       153 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~---~~--------------~~l~~L~~~~L~l~~n~~~~~~~~  215 (313)
                      ++++|.++ .+|..   +++|++|++++|.+++ +|.   .+              ..+++|+.  |++++|  .+.+ +
T Consensus       127 ~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~--L~Ls~N--~l~~-l  196 (622)
T 3g06_A          127 WIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQE--LSVSDN--QLAS-L  196 (622)
T ss_dssp             ECCSSCCS-CCCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCE--EECCSS--CCSC-C
T ss_pred             ECCCCCCC-cCCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcE--EECCCC--CCCC-C
Confidence            44444444 23321   2344444444444432 111   11              11244444  445444  2221 1


Q ss_pred             cccc-----------------ccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEcccccccccccCCCCCCEEE
Q 044980          216 PTSF-----------------IRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKLSSLRNLD  278 (313)
Q Consensus       216 ~~~~-----------------~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~L~~L~  278 (313)
                      |..+                 ..+++|+.|++++|.+++ +|   ..++     +|+.|++++|.+++.-..+++|+.|+
T Consensus       197 ~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~-----~L~~L~Ls~N~L~~lp~~~~~L~~L~  267 (622)
T 3g06_A          197 PTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPS-----ELKELMVSGNRLTSLPMLPSGLLSLS  267 (622)
T ss_dssp             CCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCT-----TCCEEECCSSCCSCCCCCCTTCCEEE
T ss_pred             CCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCC-----cCcEEECCCCCCCcCCcccccCcEEe
Confidence            1110                 112567777777777775 33   2223     78899999998887644678999999


Q ss_pred             ccCCccccccCccccCCCCCCEeeCCCCcCccc
Q 044980          279 FSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTK  311 (313)
Q Consensus       279 l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~~  311 (313)
                      +++|.++ .+|..+..+++|+.|++++|.++|.
T Consensus       268 Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~  299 (622)
T 3g06_A          268 VYRNQLT-RLPESLIHLSSETTVNLEGNPLSER  299 (622)
T ss_dssp             CCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred             CCCCCCC-cCCHHHhhccccCEEEecCCCCCCc
Confidence            9999999 8999999999999999999999874

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=1.6e-21  Score=164.62  Aligned_cols=176  Identities=24%  Similarity=0.304  Sum_probs=121.8

Q ss_pred             CCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCE
Q 044980           97 SNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQ  175 (313)
Q Consensus        97 ~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~  175 (313)
                      ...++++++++.+.    .+| .+.  +.++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        14 ~~~~~l~~~~~~l~----~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   87 (251)
T 3m19_A           14 EGKKEVDCQGKSLD----SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT   87 (251)
T ss_dssp             GGGTEEECTTCCCS----SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCeEEecCCCCcc----ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCE
Confidence            34677888887752    233 222  57888888888888777777788888888888888888766777788888888


Q ss_pred             EEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCcc
Q 044980          176 IDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALV  255 (313)
Q Consensus       176 L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~  255 (313)
                      |++++|.+++..+..+..+++|++  |++++|  .+....+..+..+++|++|++++|.+.+..+..+..++     +|+
T Consensus        88 L~L~~n~l~~~~~~~~~~l~~L~~--L~L~~N--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----~L~  158 (251)
T 3m19_A           88 LGLANNQLASLPLGVFDHLTQLDK--LYLGGN--QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT-----NLQ  158 (251)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCE--EECCSS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----TCC
T ss_pred             EECCCCcccccChhHhcccCCCCE--EEcCCC--cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCc-----CCC
Confidence            888888887666666677777777  777776  55555555566677777777777777665554555555     666


Q ss_pred             EEEccccccccc----ccCCCCCCEEEccCCccccc
Q 044980          256 SLILSHCQISAA----LGKLSSLRNLDFSLNMLNGS  287 (313)
Q Consensus       256 ~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~  287 (313)
                      .|++++|++++.    +..+++|+.|++++|.+.+.
T Consensus       159 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             EEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            666666666544    45556666666666666543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=1.6e-21  Score=169.60  Aligned_cols=192  Identities=20%  Similarity=0.262  Sum_probs=118.6

Q ss_pred             cCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCC
Q 044980           94 GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSL  173 (313)
Q Consensus        94 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L  173 (313)
                      .++++|++|++++|.+    ..++.+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++ ++ .+..+++|
T Consensus        38 ~~l~~L~~L~l~~~~i----~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L  109 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGV----TTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSI  109 (308)
T ss_dssp             HHHHTCCEEECTTSCC----CCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTC
T ss_pred             HHcCCcCEEEeeCCCc----cCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCC
Confidence            3456667777766664    224456666677777777776665443  6666667777777776663 22 45666667


Q ss_pred             CEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccC
Q 044980          174 KQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYA  253 (313)
Q Consensus       174 ~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~  253 (313)
                      ++|++++|.+++ ++. +..+++|+.  |++++|  .+....+  ++.+++|+.|++++|.+.+..+  +..++     +
T Consensus       110 ~~L~l~~n~l~~-~~~-l~~l~~L~~--L~l~~n--~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~-----~  174 (308)
T 1h6u_A          110 KTLDLTSTQITD-VTP-LAGLSNLQV--LYLDLN--QITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLS-----K  174 (308)
T ss_dssp             CEEECTTSCCCC-CGG-GTTCTTCCE--EECCSS--CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCT-----T
T ss_pred             CEEECCCCCCCC-chh-hcCCCCCCE--EECCCC--ccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCC-----C
Confidence            777777776664 232 666666766  666666  3333222  5666667777777776665332  45555     6


Q ss_pred             ccEEEccccccccc--ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCcc
Q 044980          254 LVSLILSHCQISAA--LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       254 L~~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~  310 (313)
                      |+.|++++|.+++.  +..+++|++|++++|++.+. +. +..+++|++|++++|++++
T Consensus       175 L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          175 LTTLKADDNKISDISPLASLPNLIEVHLKNNQISDV-SP-LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBC-GG-GTTCTTCCEEEEEEEEEEC
T ss_pred             CCEEECCCCccCcChhhcCCCCCCEEEccCCccCcc-cc-ccCCCCCCEEEccCCeeec
Confidence            77777777766655  55666677777777776633 32 5666677777777766654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=1.1e-22  Score=180.86  Aligned_cols=227  Identities=18%  Similarity=0.136  Sum_probs=177.5

Q ss_pred             eecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCc----hhhccCC-CCCEEEcCCccCCCCCchhhhhc-----
Q 044980           77 YSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSL----SWLSSLL-LLEHIDLGQVHLGKASDCWIYSL-----  146 (313)
Q Consensus        77 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----  146 (313)
                      .+.++.|.+++.+|..+...++|++|+|++|.+  .....    ..+.+++ +|++|++++|.+++..+..+..+     
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~   79 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNL--YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP   79 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCG--GGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCC--ChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence            356788999999998777777899999999997  22222    3577788 89999999999998888777776     


Q ss_pred             CccCeeeccCcccCcCCCCC----CCCC-CCCCEEEccCCCCCCCCchhhhc-----Cccccccccccccccccccc---
Q 044980          147 RHLFFIVLSYNQFQGKIPST----LGNL-TSLKQIDLSHNQFNFTSPGWLSK-----LNELSSFLLNLVSCMVRFHQ---  213 (313)
Q Consensus       147 ~~L~~L~L~~n~~~~~~~~~----~~~l-~~L~~L~l~~n~l~~~~p~~~~~-----l~~L~~~~L~l~~n~~~~~~---  213 (313)
                      ++|++|++++|.+++..+..    +..+ ++|++|++++|.+++..+..+..     .++|++  |++++|  .+..   
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~--L~Ls~N--~l~~~~~  155 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS--LNLRGN--DLGIKSS  155 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE--EECTTS--CGGGSCH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE--EEccCC--cCCHHHH
Confidence            89999999999998665553    3344 89999999999998776655543     369999  999998  4443   


Q ss_pred             -ccccccccCC-CcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc--------ccC-CCCCCEEEccCC
Q 044980          214 -LIPTSFIRLC-KLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--------LGK-LSSLRNLDFSLN  282 (313)
Q Consensus       214 -~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--------~~~-~~~L~~L~l~~n  282 (313)
                       .++..+.... +|++|++++|.+.+..+..+...-....++|+.|++++|.+++.        +.. .++|++|++++|
T Consensus       156 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N  235 (362)
T 3goz_A          156 DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN  235 (362)
T ss_dssp             HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred             HHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC
Confidence             3455556665 89999999999998877766655211112899999999999883        433 469999999999


Q ss_pred             ccccccC----ccccCCCCCCEeeCCCCcCc
Q 044980          283 MLNGSIP----LSLGQISHLEYLDLSNNKFV  309 (313)
Q Consensus       283 ~l~~~ip----~~l~~l~~L~~L~l~~n~l~  309 (313)
                      .+.+..+    ..+..+++|++|++++|.+.
T Consensus       236 ~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~  266 (362)
T 3goz_A          236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIVK  266 (362)
T ss_dssp             CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred             CCCcHHHHHHHHHHhcCCCccEEEeccCCcc
Confidence            9986443    34567899999999999843

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=2.1e-22  Score=177.12  Aligned_cols=223  Identities=21%  Similarity=0.225  Sum_probs=181.4

Q ss_pred             CCcceecCCCCcccccccccccCC--CCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCC-CchhhhhcCcc
Q 044980           73 GYLKYSDAEDDDHYMRSKLVVGNL--SNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKA-SDCWIYSLRHL  149 (313)
Q Consensus        73 ~~L~~L~l~~n~~~~~~~~~l~~l--~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L  149 (313)
                      ..++.++++++.+.   +..+..+  +.++.|++++|.+   .+..+.+..+++|++|++++|.+++. .+..+..+++|
T Consensus        47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l---~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L  120 (336)
T 2ast_B           47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFM---DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL  120 (336)
T ss_dssp             TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEE---CSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred             hhheeeccccccCC---HHHHHhhhhccceEEEcCCccc---cccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence            45889999998876   4556666  8999999999986   44455577899999999999998865 67778899999


Q ss_pred             CeeeccCcccCcCCCCCCCCCCCCCEEEccCC-CCCC-CCchhhhcCccccccccccccccccccc-ccccccccCC-Cc
Q 044980          150 FFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHN-QFNF-TSPGWLSKLNELSSFLLNLVSCMVRFHQ-LIPTSFIRLC-KL  225 (313)
Q Consensus       150 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n-~l~~-~~p~~~~~l~~L~~~~L~l~~n~~~~~~-~~~~~~~~~~-~L  225 (313)
                      ++|++++|.+++..+..+..+++|++|++++| .+++ .++..+..+++|++  |++++|. .+.. .++..+..++ +|
T Consensus       121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~--L~l~~~~-~l~~~~~~~~~~~l~~~L  197 (336)
T 2ast_B          121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE--LNLSWCF-DFTEKHVQVAVAHVSETI  197 (336)
T ss_dssp             SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE--EECCCCT-TCCHHHHHHHHHHSCTTC
T ss_pred             CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE--EcCCCCC-CcChHHHHHHHHhcccCC
Confidence            99999999998778888889999999999999 5765 36677889999999  8888871 1222 2567788899 99


Q ss_pred             CEEEccCC--CCC-CCcchhhhhhccccccCccEEEccccc-cccc----ccCCCCCCEEEccCCc-cccccCccccCCC
Q 044980          226 TSIDFSSV--KLS-QDISQVLDIFSAYGTYALVSLILSHCQ-ISAA----LGKLSSLRNLDFSLNM-LNGSIPLSLGQIS  296 (313)
Q Consensus       226 ~~L~l~~n--~l~-~~~~~~l~~~~~~~~~~L~~L~Ls~n~-l~~~----~~~~~~L~~L~l~~n~-l~~~ip~~l~~l~  296 (313)
                      ++|++++|  .++ +.++..+..++     +|+.|++++|. +++.    +..+++|++|++++|. +.......+..++
T Consensus       198 ~~L~l~~~~~~~~~~~l~~~~~~~~-----~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~  272 (336)
T 2ast_B          198 TQLNLSGYRKNLQKSDLSTLVRRCP-----NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP  272 (336)
T ss_dssp             CEEECCSCGGGSCHHHHHHHHHHCT-----TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT
T ss_pred             CEEEeCCCcccCCHHHHHHHHhhCC-----CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCC
Confidence            99999999  565 45566677777     99999999999 6654    7788999999999995 4433334678899


Q ss_pred             CCCEeeCCCCcCcc
Q 044980          297 HLEYLDLSNNKFVT  310 (313)
Q Consensus       297 ~L~~L~l~~n~l~~  310 (313)
                      +|++|++++| ++.
T Consensus       273 ~L~~L~l~~~-i~~  285 (336)
T 2ast_B          273 TLKTLQVFGI-VPD  285 (336)
T ss_dssp             TCCEEECTTS-SCT
T ss_pred             CCCEEeccCc-cCH
Confidence            9999999999 654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.86  E-value=1.5e-21  Score=178.45  Aligned_cols=208  Identities=19%  Similarity=0.166  Sum_probs=105.8

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCC-------------cEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCC
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNL-------------QYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGK  137 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L-------------~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  137 (313)
                      ++++|+.|++++|.+.+.+|..++++.+|             ++|++++|.+..    +|.+  .++|++|++++|.+++
T Consensus        32 ~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~----lp~~--~~~L~~L~l~~n~l~~  105 (454)
T 1jl5_A           32 NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS----LPEL--PPHLESLVASCNSLTE  105 (454)
T ss_dssp             --CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC----CCSC--CTTCSEEECCSSCCSS
T ss_pred             cccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc----CCCC--cCCCCEEEccCCcCCc
Confidence            66777777777777777777777766543             667777666421    2211  2455555555555554


Q ss_pred             CCchhh----------------hh-cCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccc
Q 044980          138 ASDCWI----------------YS-LRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSF  200 (313)
Q Consensus       138 ~~~~~~----------------~~-l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~  200 (313)
                       +|..+                .. .++|++|++++|.+++ +| .+..+++|++|++++|.+++ +|..   ..+|++ 
T Consensus       106 -lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~-  177 (454)
T 1jl5_A          106 -LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEF-  177 (454)
T ss_dssp             -CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCE-
T ss_pred             -cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccE-
Confidence             22211                00 1345555555555543 44 35555555555555555543 3322   134555 


Q ss_pred             cccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc--ccCCCCCCEEE
Q 044980          201 LLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--LGKLSSLRNLD  278 (313)
Q Consensus       201 ~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~L~~L~  278 (313)
                       +++++|  .+.+ +| .++++++|++|++++|.+.+ +|...   .     +|+.|++++|.++..  +..+++|++|+
T Consensus       178 -L~L~~n--~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~-----~L~~L~l~~n~l~~lp~~~~l~~L~~L~  243 (454)
T 1jl5_A          178 -IAAGNN--QLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---L-----SLESIVAGNNILEELPELQNLPFLTTIY  243 (454)
T ss_dssp             -EECCSS--CCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---T-----TCCEEECCSSCCSSCCCCTTCTTCCEEE
T ss_pred             -EECcCC--cCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---C-----cccEEECcCCcCCcccccCCCCCCCEEE
Confidence             555554  3333 33 35555555555555555554 22111   1     456666666655533  55556666666


Q ss_pred             ccCCccccccCccccCCCCCCEeeCCCCcCcc
Q 044980          279 FSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       279 l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~  310 (313)
                      +++|+++ .+|..   .++|++|++++|++++
T Consensus       244 l~~N~l~-~l~~~---~~~L~~L~l~~N~l~~  271 (454)
T 1jl5_A          244 ADNNLLK-TLPDL---PPSLEALNVRDNYLTD  271 (454)
T ss_dssp             CCSSCCS-SCCSC---CTTCCEEECCSSCCSC
T ss_pred             CCCCcCC-ccccc---ccccCEEECCCCcccc
Confidence            6666665 34432   2455555555555543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=1.1e-21  Score=164.29  Aligned_cols=190  Identities=17%  Similarity=0.179  Sum_probs=109.4

Q ss_pred             CcceecCCCCcccccccccccCCCCCcEeeccCCC-CCCCCCCch--hhccCCCCCEEEcCC-ccCCCCCchhhhhcCcc
Q 044980           74 YLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWID-CRLHVDSLS--WLSSLLLLEHIDLGQ-VHLGKASDCWIYSLRHL  149 (313)
Q Consensus        74 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~~--~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L  149 (313)
                      +|+.|++++|.+++..+..+.++++|++|++++|. +    ..++  .+.++++|++|++++ |.+++..+..+..+++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l----~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L  107 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL----QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL  107 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSC----CEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCc----ceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence            45556666666555444455555666666665554 3    1121  344555555555555 55554444444455555


Q ss_pred             CeeeccCcccCcCCCCCCCCCCCCC---EEEccCC-CCCCCCchhhhcCcccccccccccccccccccccccccccCCCc
Q 044980          150 FFIVLSYNQFQGKIPSTLGNLTSLK---QIDLSHN-QFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKL  225 (313)
Q Consensus       150 ~~L~L~~n~~~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L  225 (313)
                      ++|++++|.+++ +|. +..+++|+   +|++++| .+++.                            .+..+..+++|
T Consensus       108 ~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i----------------------------~~~~~~~l~~L  157 (239)
T 2xwt_C          108 KFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSI----------------------------PVNAFQGLCNE  157 (239)
T ss_dssp             CEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEE----------------------------CTTTTTTTBSS
T ss_pred             CEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhc----------------------------Ccccccchhcc
Confidence            555555555552 343 44444444   5555555 44322                            23345556667


Q ss_pred             C-EEEccCCCCCCCcchhhhhhccccccCccEEEccccc-cccc----ccCC-CCCCEEEccCCccccccCccccCCCCC
Q 044980          226 T-SIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQ-ISAA----LGKL-SSLRNLDFSLNMLNGSIPLSLGQISHL  298 (313)
Q Consensus       226 ~-~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~-l~~~----~~~~-~~L~~L~l~~n~l~~~ip~~l~~l~~L  298 (313)
                      + .|++++|.+. .+|......+     +|+.|++++|+ +++.    +..+ ++|+.|++++|+++ .+|..  .+++|
T Consensus       158 ~~~L~l~~n~l~-~i~~~~~~~~-----~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L  228 (239)
T 2xwt_C          158 TLTLKLYNNGFT-SVQGYAFNGT-----KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHL  228 (239)
T ss_dssp             EEEEECCSCCCC-EECTTTTTTC-----EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTC
T ss_pred             eeEEEcCCCCCc-ccCHhhcCCC-----CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccC
Confidence            7 7777777766 3343322224     67788888774 6544    6667 78888888888888 56654  67788


Q ss_pred             CEeeCCCC
Q 044980          299 EYLDLSNN  306 (313)
Q Consensus       299 ~~L~l~~n  306 (313)
                      +.|+++++
T Consensus       229 ~~L~l~~~  236 (239)
T 2xwt_C          229 KELIARNT  236 (239)
T ss_dssp             SEEECTTC
T ss_pred             ceeeccCc
Confidence            88888775

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=2.3e-21  Score=162.37  Aligned_cols=174  Identities=16%  Similarity=0.155  Sum_probs=124.1

Q ss_pred             CCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCcc-CCCCCchhhhhcCccCeeeccC-cccCcCCCCCCCCCCCCC
Q 044980           98 NLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVH-LGKASDCWIYSLRHLFFIVLSY-NQFQGKIPSTLGNLTSLK  174 (313)
Q Consensus        98 ~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~  174 (313)
                      .|++|++++|.+.   ...+ .+.++++|++|++++|. ++...+..+..+++|++|++++ |.+++..+..|.++++|+
T Consensus        32 ~l~~L~l~~n~l~---~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           32 STQTLKLIETHLR---TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK  108 (239)
T ss_dssp             TCCEEEEESCCCS---EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred             cccEEEEeCCcce---EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence            6778888887751   1112 46667777777777775 6555444566666677777766 666644445566666666


Q ss_pred             EEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcC---EEEccCC-CCCCCcchhhhhhcccc
Q 044980          175 QIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLT---SIDFSSV-KLSQDISQVLDIFSAYG  250 (313)
Q Consensus       175 ~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~l~~~~~~~  250 (313)
                      +|++++|.+++ +|                            . +..+.+|+   +|++++| .+.+..+..+..++   
T Consensus       109 ~L~l~~n~l~~-lp----------------------------~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~---  155 (239)
T 2xwt_C          109 FLGIFNTGLKM-FP----------------------------D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC---  155 (239)
T ss_dssp             EEEEEEECCCS-CC----------------------------C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB---
T ss_pred             EEeCCCCCCcc-cc----------------------------c-cccccccccccEEECCCCcchhhcCcccccchh---
Confidence            66666666653 33                            2 33344454   8999999 88876666677787   


Q ss_pred             ccCcc-EEEccccccccc----ccCCCCCCEEEccCCc-cccccCccccCC-CCCCEeeCCCCcCcc
Q 044980          251 TYALV-SLILSHCQISAA----LGKLSSLRNLDFSLNM-LNGSIPLSLGQI-SHLEYLDLSNNKFVT  310 (313)
Q Consensus       251 ~~~L~-~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~-l~~~ip~~l~~l-~~L~~L~l~~n~l~~  310 (313)
                        +|+ .|++++|.++..    +.. ++|++|++++|+ +++..+..+..+ ++|++|++++|++++
T Consensus       156 --~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~  219 (239)
T 2xwt_C          156 --NETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA  219 (239)
T ss_dssp             --SSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred             --cceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence              999 999999998754    334 789999999995 985556678888 999999999999975

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.85  E-value=7.2e-23  Score=187.64  Aligned_cols=227  Identities=21%  Similarity=0.119  Sum_probs=156.7

Q ss_pred             CCcceecCCCCccccc----ccccccCCCCCcEeeccCCCCCCCCCCchhhc-----cCCCCCEEEcCCccCCCC----C
Q 044980           73 GYLKYSDAEDDDHYMR----SKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLS-----SLLLLEHIDLGQVHLGKA----S  139 (313)
Q Consensus        73 ~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~----~  139 (313)
                      ++|+.|++++|.+++.    ++..+..+++|++|++++|.+  .......+.     ..++|++|++++|.+++.    +
T Consensus       142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i--~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  219 (461)
T 1z7x_W          142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI--NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL  219 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC--HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH
T ss_pred             CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc--chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHH
Confidence            3567777776666653    244455567777777777764  111111222     245788888888877764    3


Q ss_pred             chhhhhcCccCeeeccCcccCcCC-----CCCCCCCCCCCEEEccCCCCCCC----CchhhhcCcccccccccccccccc
Q 044980          140 DCWIYSLRHLFFIVLSYNQFQGKI-----PSTLGNLTSLKQIDLSHNQFNFT----SPGWLSKLNELSSFLLNLVSCMVR  210 (313)
Q Consensus       140 ~~~~~~l~~L~~L~L~~n~~~~~~-----~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~~~L~l~~n~~~  210 (313)
                      +..+..+++|++|++++|.++...     +..+..+++|++|++++|.+++.    ++..+..+++|++  |++++|  .
T Consensus       220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~--L~Ls~n--~  295 (461)
T 1z7x_W          220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE--LSLAGN--E  295 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCE--EECTTC--C
T ss_pred             HHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcce--EECCCC--C
Confidence            555667788888888888776321     22233577888888888888753    5666777888888  888887  4


Q ss_pred             ccccccccccc-----CCCcCEEEccCCCCCCC----cchhhhhhccccccCccEEEccccccccc----c----c-CCC
Q 044980          211 FHQLIPTSFIR-----LCKLTSIDFSSVKLSQD----ISQVLDIFSAYGTYALVSLILSHCQISAA----L----G-KLS  272 (313)
Q Consensus       211 ~~~~~~~~~~~-----~~~L~~L~l~~n~l~~~----~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~----~-~~~  272 (313)
                      +....+..+..     .++|+.|++++|.+++.    ++..+...+     +|+.|++++|.+++.    +    . ..+
T Consensus       296 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-----~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~  370 (461)
T 1z7x_W          296 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR-----FLLELQISNNRLEDAGVRELCQGLGQPGS  370 (461)
T ss_dssp             CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCS-----SCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred             CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCC-----CccEEEccCCccccccHHHHHHHHcCCCC
Confidence            43332222222     25889999999988765    344455556     899999999998765    2    2 267


Q ss_pred             CCCEEEccCCcccc----ccCccccCCCCCCEeeCCCCcCcc
Q 044980          273 SLRNLDFSLNMLNG----SIPLSLGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       273 ~L~~L~l~~n~l~~----~ip~~l~~l~~L~~L~l~~n~l~~  310 (313)
                      +|++|++++|.+++    .+|..+..+++|++|++++|++++
T Consensus       371 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          371 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             CCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             ceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            99999999999986    788888889999999999999875

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.85  E-value=3.6e-22  Score=182.99  Aligned_cols=130  Identities=18%  Similarity=0.059  Sum_probs=75.7

Q ss_pred             CcceecCCCCcccc----cccccccCCCCCcEeeccCCCCCCCCCCchh-----hccCCCCCEEEcCCccCCCCC----c
Q 044980           74 YLKYSDAEDDDHYM----RSKLVVGNLSNLQYLDLSWIDCRLHVDSLSW-----LSSLLLLEHIDLGQVHLGKAS----D  140 (313)
Q Consensus        74 ~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~----~  140 (313)
                      +|+.|++++|.++.    .++..+.++++|++|++++|.+.  ...+..     ....++|++|++++|.+++..    +
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~--~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  163 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG--DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  163 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH--HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc--hHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence            57888888887774    45667777788888888877751  111111     112446777777777666533    3


Q ss_pred             hhhhhcCccCeeeccCcccCcCCCCCCC-----CCCCCCEEEccCCCCCCC----CchhhhcCccccccccccccc
Q 044980          141 CWIYSLRHLFFIVLSYNQFQGKIPSTLG-----NLTSLKQIDLSHNQFNFT----SPGWLSKLNELSSFLLNLVSC  207 (313)
Q Consensus       141 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~~~L~l~~n  207 (313)
                      ..+..+++|++|++++|.++...+..+.     ..++|++|++++|.+++.    ++..+..+++|++  |++++|
T Consensus       164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~--L~Ls~n  237 (461)
T 1z7x_W          164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE--LALGSN  237 (461)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCE--EECCSS
T ss_pred             HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccE--EeccCC
Confidence            3445556677777777766533222221     244666666666666543    3445555566666  666555

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.85  E-value=4.8e-20  Score=168.55  Aligned_cols=181  Identities=24%  Similarity=0.196  Sum_probs=124.5

Q ss_pred             CCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCee
Q 044980           73 GYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI  152 (313)
Q Consensus        73 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  152 (313)
                      ++|+.|++++|.+.+ ++. +  .++|++|++++|.+   . .+|.+.++++|++|++++|.+++. |.   ...+|++|
T Consensus       111 ~~L~~L~l~~n~l~~-l~~-~--~~~L~~L~L~~n~l---~-~lp~~~~l~~L~~L~l~~N~l~~l-p~---~~~~L~~L  178 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKA-LSD-L--PPLLEYLGVSNNQL---E-KLPELQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFI  178 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCS-C--CTTCCEEECCSSCC---S-SCCCCTTCTTCCEEECCSSCCSCC-CC---CCTTCCEE
T ss_pred             CCCcEEECCCCccCc-ccC-C--CCCCCEEECcCCCC---C-CCcccCCCCCCCEEECCCCcCccc-CC---CcccccEE
Confidence            566667776666654 221 1  15777777777775   2 255677778888888888877763 32   23478888


Q ss_pred             eccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccC
Q 044980          153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSS  232 (313)
Q Consensus       153 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~  232 (313)
                      ++++|.+++ +| .+..+++|++|++++|.+++ +|..   ..+|++  +++++|  .+. .+| .++.+++|++|++++
T Consensus       179 ~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~--L~l~~n--~l~-~lp-~~~~l~~L~~L~l~~  246 (454)
T 1jl5_A          179 AAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLES--IVAGNN--ILE-ELP-ELQNLPFLTTIYADN  246 (454)
T ss_dssp             ECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCE--EECCSS--CCS-SCC-CCTTCTTCCEEECCS
T ss_pred             ECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccE--EECcCC--cCC-ccc-ccCCCCCCCEEECCC
Confidence            888888774 55 57778888888888888775 3432   247777  777777  444 456 378888888888888


Q ss_pred             CCCCCCcchhhhhhccccccCccEEEcccccccccccCCCCCCEEEccCCcccc
Q 044980          233 VKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKLSSLRNLDFSLNMLNG  286 (313)
Q Consensus       233 n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~L~~L~l~~n~l~~  286 (313)
                      |.+.+ +|..   .+     +|+.|++++|++++.-...++|++|++++|.+++
T Consensus       247 N~l~~-l~~~---~~-----~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          247 NLLKT-LPDL---PP-----SLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG  291 (454)
T ss_dssp             SCCSS-CCSC---CT-----TCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSE
T ss_pred             CcCCc-cccc---cc-----ccCEEECCCCcccccCcccCcCCEEECcCCccCc
Confidence            88876 3332   23     7888888888887753345778888888888875

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.84  E-value=2.3e-20  Score=152.93  Aligned_cols=162  Identities=23%  Similarity=0.257  Sum_probs=94.7

Q ss_pred             CCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccc
Q 044980          124 LLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLN  203 (313)
Q Consensus       124 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~  203 (313)
                      +|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++  |+
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~--L~  106 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKE--LA  106 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE--EE
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCE--EE
Confidence            3444444444444333333344444444444444444332333344444555555544444333333444445555  44


Q ss_pred             ccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEcccccccccccCCCCCCEEEccCCc
Q 044980          204 LVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKLSSLRNLDFSLNM  283 (313)
Q Consensus       204 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~L~~L~l~~n~  283 (313)
                      +++|  .+....+..+..+++|++|++++|.+.+..+..+..++     +|+.|++++|.+.+   .+++|++|+++.|+
T Consensus       107 L~~N--~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-----~L~~L~l~~N~~~~---~~~~l~~L~~~~n~  176 (208)
T 2o6s_A          107 LNTN--QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT-----SLQYIWLHDNPWDC---TCPGIRYLSEWINK  176 (208)
T ss_dssp             CCSS--CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-----TCCEEECCSCCBCC---CTTTTHHHHHHHHH
T ss_pred             cCCC--cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCC-----CccEEEecCCCeec---CCCCHHHHHHHHHh
Confidence            4444  33333344456667788888888888766665566676     88888888887654   46678888999999


Q ss_pred             cccccCccccCCCC
Q 044980          284 LNGSIPLSLGQISH  297 (313)
Q Consensus       284 l~~~ip~~l~~l~~  297 (313)
                      ++|.+|.+++.++.
T Consensus       177 ~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          177 HSGVVRNSAGSVAP  190 (208)
T ss_dssp             CTTTBBCTTSSBCT
T ss_pred             CCceeeccCccccC
Confidence            99999988887664

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.84  E-value=1.1e-20  Score=176.50  Aligned_cols=210  Identities=16%  Similarity=0.103  Sum_probs=155.0

Q ss_pred             CCCCCCCCCCc-----ccCce-EecCCCCCEEEEecCCCCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCC
Q 044980           39 ASWNIGDGDCC-----KWVGN-FCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLH  112 (313)
Q Consensus        39 ~~w~~~~~~~c-----~~~~v-~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~  112 (313)
                      ..|.. +.++|     .|.++ .|..              .+|+.|++++|.+++ +|..+  .++|++|+|++|.+.  
T Consensus        34 ~~W~~-~~~~~~~~~~~~~~l~~C~~--------------~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~--   93 (571)
T 3cvr_A           34 DKWEK-QALPGENRNEAVSLLKECLI--------------NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI--   93 (571)
T ss_dssp             HHHHT-TCCTTCCHHHHHHHHHHHHH--------------TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS--
T ss_pred             HHHhc-cCCccccccchhhhcccccc--------------CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc--
Confidence            45644 45556     68888 6742              256777777899887 77766  378999999999972  


Q ss_pred             CCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhh
Q 044980          113 VDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLS  192 (313)
Q Consensus       113 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~  192 (313)
                        .+|  ..+++|++|++++|.+++ +|. +..  +|++|++++|.+++ +|.   .+++|++|++++|.+++ +|.   
T Consensus        94 --~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---  157 (571)
T 3cvr_A           94 --SLP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---  157 (571)
T ss_dssp             --CCC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---
T ss_pred             --ccc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---
Confidence              455  557899999999999988 454 433  89999999999996 676   57899999999999986 565   


Q ss_pred             cCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhc-cccccCccEEEccccccccc---c
Q 044980          193 KLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFS-AYGTYALVSLILSHCQISAA---L  268 (313)
Q Consensus       193 ~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~-~~~~~~L~~L~Ls~n~l~~~---~  268 (313)
                      .+++|+.  |++++|  .+.+ +|. +.  ++|+.|++++|.++ .+|. +.. . ....+.|+.|+|++|.++..   +
T Consensus       158 ~l~~L~~--L~Ls~N--~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~-~L~~~~~~L~~L~Ls~N~l~~lp~~l  226 (571)
T 3cvr_A          158 LPTSLEV--LSVRNN--QLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV-RNHHSEETEIFFRCRENRITHIPENI  226 (571)
T ss_dssp             CCTTCCE--EECCSS--CCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC---------CCEEEECCSSCCCCCCGGG
T ss_pred             cCCCcCE--EECCCC--CCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH-hhhcccccceEEecCCCcceecCHHH
Confidence            5678888  888888  5555 666 55  78999999999988 4454 322 1 00011238888888887765   5


Q ss_pred             cCCCCCCEEEccCCccccccCccccCC
Q 044980          269 GKLSSLRNLDFSLNMLNGSIPLSLGQI  295 (313)
Q Consensus       269 ~~~~~L~~L~l~~n~l~~~ip~~l~~l  295 (313)
                      ..+++|+.|+|++|.+++.+|..+..+
T Consensus       227 ~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          227 LSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             GGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             hcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            568888888888888888887776654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=1.4e-20  Score=154.18  Aligned_cols=185  Identities=18%  Similarity=0.114  Sum_probs=124.8

Q ss_pred             CCCcccCceEecCCCCCEEEEecCCCCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCC
Q 044980           46 GDCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLL  124 (313)
Q Consensus        46 ~~~c~~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~  124 (313)
                      ...|.|.++.|....  ++.+.. .-.++|+.|++++|.+.+..+..+.++++|++|++++|.+   ....+ .+..+++
T Consensus         4 ~C~C~~~~v~c~~~~--l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~   77 (208)
T 2o6s_A            4 RCSCSGTTVECYSQG--RTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL---QSLPNGVFNKLTS   77 (208)
T ss_dssp             TCEEETTEEECCSSC--CSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC---CCCCTTTTTTCTT
T ss_pred             CCEECCCEEEecCCC--ccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCcc---CccChhhcCCCCC
Confidence            345899999996422  222221 1345788888888888766555677788888888888875   22222 3567788


Q ss_pred             CCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccc
Q 044980          125 LEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNL  204 (313)
Q Consensus       125 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l  204 (313)
                      |++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.  +++
T Consensus        78 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~--L~l  155 (208)
T 2o6s_A           78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY--IWL  155 (208)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE--EEC
T ss_pred             cCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccE--EEe
Confidence            888888888887766666677778888888888887555555677788888888888777655555666777777  676


Q ss_pred             cccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhc
Q 044980          205 VSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFS  247 (313)
Q Consensus       205 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~  247 (313)
                      ++|  .+.       +.+++|+.|++..|.++|.+|..++.++
T Consensus       156 ~~N--~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          156 HDN--PWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             CSC--CBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             cCC--Cee-------cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence            666  221       2344566666777777776666555443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.83  E-value=6.5e-22  Score=177.43  Aligned_cols=211  Identities=18%  Similarity=0.144  Sum_probs=164.6

Q ss_pred             ccccccCCCCCcEeeccCCCCCCCCCC---ch-hhccCCCCCEEEcCCccC---CCCCchhh-------hhcCccCeeec
Q 044980           89 SKLVVGNLSNLQYLDLSWIDCRLHVDS---LS-WLSSLLLLEHIDLGQVHL---GKASDCWI-------YSLRHLFFIVL  154 (313)
Q Consensus        89 ~~~~l~~l~~L~~L~L~~n~~~~~~~~---~~-~~~~l~~L~~L~l~~n~l---~~~~~~~~-------~~l~~L~~L~L  154 (313)
                      ++..+..+++|++|+|++|.+.  ...   ++ .+..+++|++|++++|.+   ++.+|..+       ..+++|++|++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~--~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIG--TEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEEC--HHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHhcCCCccEEECCCCCCC--HHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence            5566788899999999999861  111   11 366899999999999644   44555544       67889999999


Q ss_pred             cCcccCc----CCCCCCCCCCCCCEEEccCCCCCCCCchhhh----cC---------cccccccccccccccccc-cccc
Q 044980          155 SYNQFQG----KIPSTLGNLTSLKQIDLSHNQFNFTSPGWLS----KL---------NELSSFLLNLVSCMVRFH-QLIP  216 (313)
Q Consensus       155 ~~n~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~----~l---------~~L~~~~L~l~~n~~~~~-~~~~  216 (313)
                      ++|.+++    .+|..+..+++|++|++++|.+++..+..+.    .+         ++|++  |++++|  .+. ..++
T Consensus       102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~--L~L~~n--~l~~~~~~  177 (386)
T 2ca6_A          102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRS--IICGRN--RLENGSMK  177 (386)
T ss_dssp             CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCE--EECCSS--CCTGGGHH
T ss_pred             CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcE--EECCCC--CCCcHHHH
Confidence            9999986    3666778899999999999998754443333    33         89999  999998  444 2344


Q ss_pred             ---cccccCCCcCEEEccCCCCCCC-----cchhhhhhccccccCccEEEccccccccc--------ccCCCCCCEEEcc
Q 044980          217 ---TSFIRLCKLTSIDFSSVKLSQD-----ISQVLDIFSAYGTYALVSLILSHCQISAA--------LGKLSSLRNLDFS  280 (313)
Q Consensus       217 ---~~~~~~~~L~~L~l~~n~l~~~-----~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--------~~~~~~L~~L~l~  280 (313)
                         ..+..+++|++|++++|.+...     .+..+..++     +|+.|+|++|.+++.        +..+++|++|+|+
T Consensus       178 ~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~-----~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~  252 (386)
T 2ca6_A          178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ-----ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN  252 (386)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT-----TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred             HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCC-----CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECC
Confidence               5677889999999999999842     222455566     999999999999632        7788999999999


Q ss_pred             CCccccc----cCcccc--CCCCCCEeeCCCCcCcc
Q 044980          281 LNMLNGS----IPLSLG--QISHLEYLDLSNNKFVT  310 (313)
Q Consensus       281 ~n~l~~~----ip~~l~--~l~~L~~L~l~~n~l~~  310 (313)
                      +|.+++.    +|..+.  .+++|++|++++|.+++
T Consensus       253 ~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             CCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            9999865    566663  48999999999999986

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.82  E-value=1e-19  Score=156.93  Aligned_cols=168  Identities=24%  Similarity=0.292  Sum_probs=79.4

Q ss_pred             CCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCC
Q 044980           95 NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLK  174 (313)
Q Consensus        95 ~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~  174 (313)
                      ++++|++|++++|.+    ..++.+..+++|++|++++|.+++..+  +..+++|++|++++|.+++ ++ .+..+++|+
T Consensus        44 ~l~~L~~L~l~~~~i----~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~  115 (291)
T 1h6t_A           44 ELNSIDQIIANNSDI----KSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLK  115 (291)
T ss_dssp             HHHTCCEEECTTSCC----CCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCC
T ss_pred             hcCcccEEEccCCCc----ccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCC
Confidence            344555555555543    122334445555555555555544332  4445555555555555442 22 244455555


Q ss_pred             EEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCc
Q 044980          175 QIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYAL  254 (313)
Q Consensus       175 ~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L  254 (313)
                      +|++++|.+.+.  ..+..+++|+.  |++++|  .+...  ..+..+++|+.|++++|.+.+..+  +..++     +|
T Consensus       116 ~L~L~~n~i~~~--~~l~~l~~L~~--L~l~~n--~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~-----~L  180 (291)
T 1h6t_A          116 SLSLEHNGISDI--NGLVHLPQLES--LYLGNN--KITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLT-----KL  180 (291)
T ss_dssp             EEECTTSCCCCC--GGGGGCTTCCE--EECCSS--CCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCT-----TC
T ss_pred             EEECCCCcCCCC--hhhcCCCCCCE--EEccCC--cCCcc--hhhccCCCCCEEEccCCccccchh--hcCCC-----cc
Confidence            555555554432  23444455555  444444  22222  334445555555555555554332  33343     55


Q ss_pred             cEEEccccccccc--ccCCCCCCEEEccCCccc
Q 044980          255 VSLILSHCQISAA--LGKLSSLRNLDFSLNMLN  285 (313)
Q Consensus       255 ~~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~  285 (313)
                      +.|++++|.+++.  +..+++|+.|++++|.+.
T Consensus       181 ~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          181 QNLYLSKNHISDLRALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CEEECCSSCCCBCGGGTTCTTCSEEEEEEEEEE
T ss_pred             CEEECCCCcCCCChhhccCCCCCEEECcCCccc
Confidence            5555555555443  444555555555555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.82  E-value=1.5e-19  Score=170.30  Aligned_cols=187  Identities=21%  Similarity=0.244  Sum_probs=122.8

Q ss_pred             cceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeec
Q 044980           75 LKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVL  154 (313)
Q Consensus        75 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  154 (313)
                      +..+.+..+.+...++  +..+++|+.|++++|.+    ..++.+..+++|+.|++++|.+.+..+  +..+++|++|+|
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i----~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L   94 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI----KSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL   94 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCC----CCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred             HHHHhccCCCcccccc--hhcCCCCCEEECcCCCC----CCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence            4444555555544332  34566777777777764    334456677777777777777766544  667777777777


Q ss_pred             cCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCC
Q 044980          155 SYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVK  234 (313)
Q Consensus       155 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~  234 (313)
                      ++|.+.+ +| .+..+++|+.|++++|.+.+ + ..+..+++|+.  |++++|  .+...  ..+..+++|+.|++++|.
T Consensus        95 s~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~--L~Ls~N--~l~~l--~~l~~l~~L~~L~Ls~N~  164 (605)
T 1m9s_A           95 DENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLES--LYLGNN--KITDI--TVLSRLTKLDTLSLEDNQ  164 (605)
T ss_dssp             CSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSE--EECCSS--CCCCC--GGGGSCTTCSEEECCSSC
T ss_pred             cCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCE--EECCCC--ccCCc--hhhcccCCCCEEECcCCc
Confidence            7777763 33 56677777777777777764 2 34667777777  777776  44443  456677777777777777


Q ss_pred             CCCCcchhhhhhccccccCccEEEccccccccc--ccCCCCCCEEEccCCcccc
Q 044980          235 LSQDISQVLDIFSAYGTYALVSLILSHCQISAA--LGKLSSLRNLDFSLNMLNG  286 (313)
Q Consensus       235 l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~~  286 (313)
                      +.+..|  +..++     +|+.|+|++|.+++.  +..+++|+.|+|++|.+.+
T Consensus       165 l~~~~~--l~~l~-----~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          165 ISDIVP--LAGLT-----KLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CCCCGG--GTTCT-----TCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEEC
T ss_pred             CCCchh--hccCC-----CCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcC
Confidence            776544  55555     777777777777665  6667777777777777764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=7.5e-20  Score=161.86  Aligned_cols=241  Identities=16%  Similarity=0.079  Sum_probs=181.8

Q ss_pred             cccCceEecCCCCCEEEEecCCCCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch--hhccCCCCC
Q 044980           49 CKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS--WLSSLLLLE  126 (313)
Q Consensus        49 c~~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~--~~~~l~~L~  126 (313)
                      |.|..|.|...  .++++-- +-.++++.|++++|.++..-+.+|.++++|++|+|++|.+   .+.++  +|.++++++
T Consensus         9 C~~~~v~C~~~--~Lt~iP~-~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i---~~~i~~~~f~~L~~l~   82 (350)
T 4ay9_X            9 CSNRVFLCQES--KVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV---LEVIEADVFSNLPKLH   82 (350)
T ss_dssp             EETTEEEEEST--TCCSCCT-TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTT---CCEECTTSBCSCTTCC
T ss_pred             eeCCEEEecCC--CCCccCc-CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCC---CCccChhHhhcchhhh
Confidence            78899999642  2333211 1235799999999999865556799999999999999985   33343  577888876


Q ss_pred             E-EEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCC-CCCCCCchhhhcC-ccccccccc
Q 044980          127 H-IDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHN-QFNFTSPGWLSKL-NELSSFLLN  203 (313)
Q Consensus       127 ~-L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l-~~L~~~~L~  203 (313)
                      + +.++.|.+....|..+..+++|++|++++|++....+..+....++..+++.++ .+....+..+..+ ..++.  ++
T Consensus        83 ~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~--L~  160 (350)
T 4ay9_X           83 EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI--LW  160 (350)
T ss_dssp             EEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEE--EE
T ss_pred             hhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhh--hc
Confidence            5 566778998887888899999999999999999666666667778889999774 4554444455555 36788  89


Q ss_pred             ccccccccccccccccccCCCcCEEEccC-CCCCCCcchhhhhhccccccCccEEEccccccccc-ccCCCCCCEEEccC
Q 044980          204 LVSCMVRFHQLIPTSFIRLCKLTSIDFSS-VKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA-LGKLSSLRNLDFSL  281 (313)
Q Consensus       204 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~L~~L~l~~  281 (313)
                      +++|  .+.. +|.......+|+.+++.+ |.+....+..+..++     +|+.|++++|+++.. ...+.+|+.|.+.+
T Consensus       161 L~~N--~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~-----~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~  232 (350)
T 4ay9_X          161 LNKN--GIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS-----GPVILDISRTRIHSLPSYGLENLKKLRARS  232 (350)
T ss_dssp             CCSS--CCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEE-----CCSEEECTTSCCCCCCSSSCTTCCEEECTT
T ss_pred             cccc--cccC-CChhhccccchhHHhhccCCcccCCCHHHhccCc-----ccchhhcCCCCcCccChhhhccchHhhhcc
Confidence            9998  5554 455554566899999986 555544445677888     999999999999887 55578888888877


Q ss_pred             CccccccCccccCCCCCCEeeCCCC
Q 044980          282 NMLNGSIPLSLGQISHLEYLDLSNN  306 (313)
Q Consensus       282 n~l~~~ip~~l~~l~~L~~L~l~~n  306 (313)
                      +.-...+|. +..+++|+.+++.++
T Consensus       233 ~~~l~~lP~-l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          233 TYNLKKLPT-LEKLVALMEASLTYP  256 (350)
T ss_dssp             CTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred             CCCcCcCCC-chhCcChhhCcCCCC
Confidence            764547884 788999999999764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.81  E-value=2.4e-19  Score=154.57  Aligned_cols=188  Identities=22%  Similarity=0.248  Sum_probs=156.5

Q ss_pred             CCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEE
Q 044980           98 NLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQID  177 (313)
Q Consensus        98 ~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  177 (313)
                      .+..+.+..+.+    ..+.....+++|++|++++|.+... + .+..+++|++|++++|.+++. +. +..+++|++|+
T Consensus        25 ~~~~~~l~~~~~----~~~~~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~   96 (291)
T 1h6t_A           25 ETIKDNLKKKSV----TDAVTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLF   96 (291)
T ss_dssp             HHHHHHTTCSCT----TSEECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEE
T ss_pred             HHHHHHhcCCCc----ccccchhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEE
Confidence            344455655553    2334466789999999999999875 3 388899999999999999954 44 88999999999


Q ss_pred             ccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEE
Q 044980          178 LSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSL  257 (313)
Q Consensus       178 l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L  257 (313)
                      +++|.+++ ++ .+..+++|+.  |++++|  .+...  ..+..+++|+.|++++|.+.+.  ..+..++     +|+.|
T Consensus        97 l~~n~l~~-~~-~l~~l~~L~~--L~L~~n--~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~-----~L~~L  161 (291)
T 1h6t_A           97 LDENKVKD-LS-SLKDLKKLKS--LSLEHN--GISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLT-----KLDTL  161 (291)
T ss_dssp             CCSSCCCC-GG-GGTTCTTCCE--EECTTS--CCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCT-----TCSEE
T ss_pred             CCCCcCCC-Ch-hhccCCCCCE--EECCCC--cCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCC-----CCCEE
Confidence            99999985 33 4899999999  999999  55543  4688899999999999999875  5677777     99999


Q ss_pred             Eccccccccc--ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCcc
Q 044980          258 ILSHCQISAA--LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       258 ~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~  310 (313)
                      ++++|.+++.  +..+++|++|++++|.++ .++. +..+++|+.|++++|+++.
T Consensus       162 ~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~-~l~~-l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          162 SLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             ECCSSCCCCCGGGTTCTTCCEEECCSSCCC-BCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred             EccCCccccchhhcCCCccCEEECCCCcCC-CChh-hccCCCCCEEECcCCcccC
Confidence            9999999887  888999999999999999 4664 8999999999999998865

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.81  E-value=7.3e-19  Score=166.00  Aligned_cols=235  Identities=16%  Similarity=0.116  Sum_probs=151.3

Q ss_pred             CCCCCCCCCCCcccCceEecCCCCCEEEEecCCCCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch
Q 044980           38 LASWNIGDGDCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS  117 (313)
Q Consensus        38 ~~~w~~~~~~~c~~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~  117 (313)
                      ...|.. ..++|.|.+..+....  +.    .....+++.|++++|.++ .+|..+.  ++|++|++++|.+.    .+|
T Consensus        12 w~~W~~-~~~~~~~~~r~~~~~~--~~----~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~----~lp   77 (622)
T 3g06_A           12 WSAWRR-AAPAEESRGRAAVVQK--MR----ACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT----SLP   77 (622)
T ss_dssp             HHHHHH-TCCGGGHHHHHHHHHH--HH----HHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS----CCC
T ss_pred             HHHHHh-cCCcchhccccccCcc--cc----cccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC----CCC
Confidence            356765 6678888653221000  00    001123667777778888 6777665  89999999999972    344


Q ss_pred             hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccc
Q 044980          118 WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNEL  197 (313)
Q Consensus       118 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  197 (313)
                      .  .+++|++|++++|.++.. |.   .+++|++|++++|.++ .+|.   .+++|+.|++++|.+++ +|..   +++|
T Consensus        78 ~--~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L  143 (622)
T 3g06_A           78 A--LPPELRTLEVSGNQLTSL-PV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIFGNQLTS-LPVL---PPGL  143 (622)
T ss_dssp             C--CCTTCCEEEECSCCCSCC-CC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECCSSCCSC-CCCC---CTTC
T ss_pred             C--cCCCCCEEEcCCCcCCcC-CC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECCCCCCCc-CCCC---CCCC
Confidence            3  578999999999999864 32   7889999999999998 4555   56889999999999985 5543   4788


Q ss_pred             ccccccccccccccccc--cccccccC--------------CCcCEEEccCCCCCCCcchhhhhhcc------------c
Q 044980          198 SSFLLNLVSCMVRFHQL--IPTSFIRL--------------CKLTSIDFSSVKLSQDISQVLDIFSA------------Y  249 (313)
Q Consensus       198 ~~~~L~l~~n~~~~~~~--~~~~~~~~--------------~~L~~L~l~~n~l~~~~~~~l~~~~~------------~  249 (313)
                      ++  |++++|  .+.++  .+..+..+              ++|+.|++++|.+.+. |..+..+..            .
T Consensus       144 ~~--L~Ls~N--~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l-~~~~~~L~~L~L~~N~l~~l~~  218 (622)
T 3g06_A          144 QE--LSVSDN--QLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASL-PTLPSELYKLWAYNNRLTSLPA  218 (622)
T ss_dssp             CE--EECCSS--CCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCC-CCCCTTCCEEECCSSCCSSCCC
T ss_pred             CE--EECcCC--cCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCC-CCccchhhEEECcCCcccccCC
Confidence            88  888888  33331  22222222              6778888888877752 221111100            0


Q ss_pred             cccCccEEEcccccccccccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCc
Q 044980          250 GTYALVSLILSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFV  309 (313)
Q Consensus       250 ~~~~L~~L~Ls~n~l~~~~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~  309 (313)
                      ..++|+.|++++|.+++.-..+++|+.|++++|.++ .+|.   .+++|++|++++|+|+
T Consensus       219 ~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~  274 (622)
T 3g06_A          219 LPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT  274 (622)
T ss_dssp             CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC
T ss_pred             CCCCCCEEEccCCccCcCCCCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC
Confidence            012456666666665554344566666666666666 4554   4566777777777665

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.79  E-value=5.7e-20  Score=177.11  Aligned_cols=262  Identities=16%  Similarity=0.159  Sum_probs=124.5

Q ss_pred             CCHHhHHHHHHhhhhcccCC-CCCCCCCCCCCCCcccCceEecCCCCCEEEEecCCCCCCcceecCCCCccccccccccc
Q 044980           16 CKESERGALLKLKRNLKDLS-NCLASWNIGDGDCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVG   94 (313)
Q Consensus        16 ~~~~~~~~l~~~~~~~~~~~-~~~~~w~~~~~~~c~~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~   94 (313)
                      ....+++++.++..+...+. .....|.......+.|.+..+..  .+++.+++.            .|.+.. ++..+.
T Consensus       129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~------------~n~~~~-~~~~~l  193 (727)
T 4b8c_D          129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELF------------ANGKDE-ANQALL  193 (727)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred             ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEee------------CCCCCc-chhhHh
Confidence            45668899999998875332 22356654345556777766642  445555543            344443 222222


Q ss_pred             CCCCCcEe-----eccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCC
Q 044980           95 NLSNLQYL-----DLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGN  169 (313)
Q Consensus        95 ~l~~L~~L-----~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~  169 (313)
                      ....|+.+     ++..|.+   ......+..++.|+.|++++|.+.. +|..+..+++|++|+|++|.++ .+|..+..
T Consensus       194 ~~l~Ls~~~i~~~~~~~n~~---~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  268 (727)
T 4b8c_D          194 QHKKLSQYSIDEDDDIENRM---VMPKDSKYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKN  268 (727)
T ss_dssp             -------------------------------CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGG
T ss_pred             hcCccCcccccCccccccce---ecChhhhccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhC
Confidence            22222222     2222221   1111246778888888888888874 4555668888888888888888 78888888


Q ss_pred             CCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccc
Q 044980          170 LTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAY  249 (313)
Q Consensus       170 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~  249 (313)
                      +++|++|+|++|.++ .+|..++.+++|++  |++++|  .+. .+|..++.+++|+.|++++|.+.+.+|..+..... 
T Consensus       269 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~--L~L~~N--~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~-  341 (727)
T 4b8c_D          269 LSNLRVLDLSHNRLT-SLPAELGSCFQLKY--FYFFDN--MVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV-  341 (727)
T ss_dssp             GTTCCEEECTTSCCS-SCCSSGGGGTTCSE--EECCSS--CCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHH-
T ss_pred             CCCCCEEeCcCCcCC-ccChhhcCCCCCCE--EECCCC--CCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcch-
Confidence            888888888888888 67888888888888  888888  444 57878888999999999999999888887765431 


Q ss_pred             cccCccEEEcccccccccccCCCCCCEEEccCC--------ccccccCccccCCCCCCEeeCCCCcCc
Q 044980          250 GTYALVSLILSHCQISAALGKLSSLRNLDFSLN--------MLNGSIPLSLGQISHLEYLDLSNNKFV  309 (313)
Q Consensus       250 ~~~~L~~L~Ls~n~l~~~~~~~~~L~~L~l~~n--------~l~~~ip~~l~~l~~L~~L~l~~n~l~  309 (313)
                         .+..+++++|.+++.+  ...|+.|+++.|        .+.+..+..+..+..+....+++|.+.
T Consensus       342 ---~~~~l~l~~N~l~~~~--p~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          342 ---TGLIFYLRDNRPEIPL--PHERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             ---HHHHHHHHHCCCCCCC--CCC-----------------------------------------CCC
T ss_pred             ---hhhHHhhccCcccCcC--ccccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence               2334678888887753  235677777777        233333444455566667777777664

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=1.2e-18  Score=144.81  Aligned_cols=161  Identities=19%  Similarity=0.142  Sum_probs=83.4

Q ss_pred             CCCCcccCceEecCCCCCEEEEecCCCCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCC
Q 044980           45 DGDCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLL  124 (313)
Q Consensus        45 ~~~~c~~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~  124 (313)
                      ..+.|.|.++.|....  ++.+.. +-.++|+.|++++|.+.+..|..|.++++|++|+|++|.                
T Consensus        15 ~~~~Cs~~~v~c~~~~--l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~----------------   75 (229)
T 3e6j_A           15 SQCSCSGTTVDCRSKR--HASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ----------------   75 (229)
T ss_dssp             TTCEEETTEEECTTSC--CSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC----------------
T ss_pred             CCCEEeCCEeEccCCC--cCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC----------------
Confidence            7788999999996421  111111 112445555555555555445455555555555555555                


Q ss_pred             CCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccc
Q 044980          125 LEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNL  204 (313)
Q Consensus       125 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l  204 (313)
                                ++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|+.  |++
T Consensus        76 ----------l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~--L~L  142 (229)
T 3e6j_A           76 ----------LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTH--LAL  142 (229)
T ss_dssp             ----------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSE--EEC
T ss_pred             ----------CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCE--EEC
Confidence                      43333333344444444444444444333333444455555555555544 34444444555555  444


Q ss_pred             cccccccccccccccccCCCcCEEEccCCCCCCCc
Q 044980          205 VSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDI  239 (313)
Q Consensus       205 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  239 (313)
                      ++|  .+....+..+..+++|+.|++++|.+....
T Consensus       143 ~~N--~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          143 DQN--QLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             CSS--CCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             CCC--cCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            444  333333344556667777777777776554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.78  E-value=1.1e-18  Score=164.54  Aligned_cols=191  Identities=24%  Similarity=0.268  Sum_probs=159.6

Q ss_pred             CCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCE
Q 044980           96 LSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQ  175 (313)
Q Consensus        96 l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~  175 (313)
                      +..+..+.+..+.+    ..+..+..+++|+.|++++|.+....  .+..+++|++|+|++|.+.+..+  +..+++|+.
T Consensus        20 l~~l~~l~l~~~~i----~~~~~~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~   91 (605)
T 1m9s_A           20 FAETIKDNLKKKSV----TDAVTQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGW   91 (605)
T ss_dssp             HHHHHHHHTTCSCT----TSEECHHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCE
T ss_pred             HHHHHHHhccCCCc----ccccchhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCE
Confidence            34555666766663    33444677899999999999998753  38899999999999999995444  889999999


Q ss_pred             EEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCcc
Q 044980          176 IDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALV  255 (313)
Q Consensus       176 L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~  255 (313)
                      |+|++|.+.+ +| .+..+++|+.  |++++|  .+.. + ..+..+++|+.|++++|.+.+.  ..+..++     +|+
T Consensus        92 L~Ls~N~l~~-l~-~l~~l~~L~~--L~Ls~N--~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~-----~L~  156 (605)
T 1m9s_A           92 LFLDENKIKD-LS-SLKDLKKLKS--LSLEHN--GISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLT-----KLD  156 (605)
T ss_dssp             EECCSSCCCC-CT-TSTTCTTCCE--EECTTS--CCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCT-----TCS
T ss_pred             EECcCCCCCC-Ch-hhccCCCCCE--EEecCC--CCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccC-----CCC
Confidence            9999999985 34 6889999999  999999  5554 2 4588999999999999999975  5577777     999


Q ss_pred             EEEccccccccc--ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCccc
Q 044980          256 SLILSHCQISAA--LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTK  311 (313)
Q Consensus       256 ~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~~  311 (313)
                      .|+|++|.+++.  +..+++|+.|+|++|++.+ +| .+..+++|+.|++++|++++.
T Consensus       157 ~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          157 TLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             EEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred             EEECcCCcCCCchhhccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence            999999999887  8889999999999999995 54 589999999999999998764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=2.8e-18  Score=141.73  Aligned_cols=148  Identities=20%  Similarity=0.214  Sum_probs=91.0

Q ss_pred             CEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccc
Q 044980          126 EHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLV  205 (313)
Q Consensus       126 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~  205 (313)
                      +.++++++.++.. |..+  .++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++  |+++
T Consensus        14 ~~v~c~~~~l~~i-P~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~--L~Ls   88 (220)
T 2v9t_B           14 NIVDCRGKGLTEI-PTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS--LVLY   88 (220)
T ss_dssp             TEEECTTSCCSSC-CSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCE--EECC
T ss_pred             CEEEcCCCCcCcC-CCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCE--EECC
Confidence            5677777777654 2211  245777778877777655566777777777777777777666666666666666  6666


Q ss_pred             ccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccC
Q 044980          206 SCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSL  281 (313)
Q Consensus       206 ~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~  281 (313)
                      +|  .+..+.+..+..+++|++|++++|.+.+..+..+..++     +|+.|+|++|.+++.    +..+++|+.|++++
T Consensus        89 ~N--~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  161 (220)
T 2v9t_B           89 GN--KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLH-----NLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ  161 (220)
T ss_dssp             SS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             CC--cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCC-----CCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence            66  44444444455666666666666666655555555555     555555555555443    44455555555555


Q ss_pred             Cccc
Q 044980          282 NMLN  285 (313)
Q Consensus       282 n~l~  285 (313)
                      |.+.
T Consensus       162 N~~~  165 (220)
T 2v9t_B          162 NPFI  165 (220)
T ss_dssp             SCEE
T ss_pred             CCcC
Confidence            5544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.78  E-value=1.5e-18  Score=140.90  Aligned_cols=153  Identities=16%  Similarity=0.197  Sum_probs=92.2

Q ss_pred             hhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCC
Q 044980          144 YSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLC  223 (313)
Q Consensus       144 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~  223 (313)
                      ..+++|++|++++|.++ .+| .+..+++|++|++++|.+..  +..+..+++|++  |++++|  .+....+..++.++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~--L~l~~n--~l~~~~~~~l~~l~  112 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLER--LRIMGK--DVTSDKIPNLSGLT  112 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCE--EEEECT--TCBGGGSCCCTTCT
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCE--EEeECC--ccCcccChhhcCCC
Confidence            34444455555555444 333 34445555555555553331  123445555555  555555  44444455566667


Q ss_pred             CcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccc-cccc--ccCCCCCCEEEccCCccccccCccccCCCCCCE
Q 044980          224 KLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQ-ISAA--LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEY  300 (313)
Q Consensus       224 ~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~-l~~~--~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~  300 (313)
                      +|++|++++|.+.+..+..+..++     +|+.|++++|. ++..  +..+++|++|++++|.+++ ++ .+..+++|++
T Consensus       113 ~L~~L~Ls~n~i~~~~~~~l~~l~-----~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~  185 (197)
T 4ezg_A          113 SLTLLDISHSAHDDSILTKINTLP-----KVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQ  185 (197)
T ss_dssp             TCCEEECCSSBCBGGGHHHHTTCS-----SCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCE
T ss_pred             CCCEEEecCCccCcHhHHHHhhCC-----CCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCE
Confidence            777777777777766666666666     77777777776 5544  6677888888888888874 55 5778888888


Q ss_pred             eeCCCCcCccc
Q 044980          301 LDLSNNKFVTK  311 (313)
Q Consensus       301 L~l~~n~l~~~  311 (313)
                      |++++|++.+.
T Consensus       186 L~l~~N~i~~~  196 (197)
T 4ezg_A          186 LYAFSQTIGGK  196 (197)
T ss_dssp             EEECBC-----
T ss_pred             EEeeCcccCCc
Confidence            88888887653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=3.1e-18  Score=141.47  Aligned_cols=153  Identities=21%  Similarity=0.224  Sum_probs=80.8

Q ss_pred             CEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCC-CCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccc
Q 044980          126 EHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIP-STLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNL  204 (313)
Q Consensus       126 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l  204 (313)
                      +++++++|.++.. |..+  ...+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..+..+++|++  |++
T Consensus        14 ~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~--L~L   88 (220)
T 2v70_A           14 TTVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE--ILL   88 (220)
T ss_dssp             TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCE--EEC
T ss_pred             CEeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCE--EEC
Confidence            4667777666543 3211  2235666666666664433 33556666666666666666544444555555555  555


Q ss_pred             cccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEcccccccccccCCCCCCEEEccCCcc
Q 044980          205 VSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKLSSLRNLDFSLNML  284 (313)
Q Consensus       205 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~L~~L~l~~n~l  284 (313)
                      ++|  .+.+..+..+..+++|++|++++|.+.+..|..                         +..+++|++|+|++|++
T Consensus        89 s~N--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-------------------------~~~l~~L~~L~L~~N~l  141 (220)
T 2v70_A           89 TSN--RLENVQHKMFKGLESLKTLMLRSNRITCVGNDS-------------------------FIGLSSVRLLSLYDNQI  141 (220)
T ss_dssp             CSS--CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTS-------------------------STTCTTCSEEECTTSCC
T ss_pred             CCC--ccCccCHhHhcCCcCCCEEECCCCcCCeECHhH-------------------------cCCCccCCEEECCCCcC
Confidence            554  344444444444455555555555544444443                         44445555555555555


Q ss_pred             ccccCccccCCCCCCEeeCCCCcCcc
Q 044980          285 NGSIPLSLGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       285 ~~~ip~~l~~l~~L~~L~l~~n~l~~  310 (313)
                      ++..|..+..+++|++|++++|.+++
T Consensus       142 ~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          142 TTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             CCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             CEECHHHhcCCCCCCEEEecCcCCcC
Confidence            54445555555555555555555543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=8e-18  Score=139.90  Aligned_cols=150  Identities=21%  Similarity=0.253  Sum_probs=107.0

Q ss_pred             CCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccc
Q 044980          125 LEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNL  204 (313)
Q Consensus       125 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l  204 (313)
                      .+.++.+++.++... ..  ..++|++|++++|.+++..|..+..+++|++|++++|.+....+..+..+++|+.  |++
T Consensus        21 ~~~v~c~~~~l~~ip-~~--~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~--L~L   95 (229)
T 3e6j_A           21 GTTVDCRSKRHASVP-AG--IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV--LDL   95 (229)
T ss_dssp             TTEEECTTSCCSSCC-SC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE--EEC
T ss_pred             CCEeEccCCCcCccC-CC--CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCE--EEC
Confidence            567888888776543 21  2366888888888888777788888888888888888887555566677777877  777


Q ss_pred             cccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEcc
Q 044980          205 VSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFS  280 (313)
Q Consensus       205 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~  280 (313)
                      ++|  .+....+..+..+++|+.|++++|.+. .+|..+..++     +|+.|++++|++++.    +..+++|+.|+++
T Consensus        96 s~N--~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  167 (229)
T 3e6j_A           96 GTN--QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLT-----HLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF  167 (229)
T ss_dssp             CSS--CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCT-----TCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCC--cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCC-----CCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence            777  566555556677777777777777777 4566566555     677777777776654    5556667777777


Q ss_pred             CCccccc
Q 044980          281 LNMLNGS  287 (313)
Q Consensus       281 ~n~l~~~  287 (313)
                      +|.+...
T Consensus       168 ~N~~~c~  174 (229)
T 3e6j_A          168 GNPWDCE  174 (229)
T ss_dssp             TSCBCTT
T ss_pred             CCCccCC
Confidence            7766643

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.76  E-value=2.4e-18  Score=163.35  Aligned_cols=230  Identities=23%  Similarity=0.251  Sum_probs=189.3

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF  150 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  150 (313)
                      .++.|+.+++..|.....  .....++.|+.|+++.|.+.........+..+..|+++++..+...... ..+..+++|+
T Consensus       347 ~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~-~~~~~l~~L~  423 (635)
T 4g8a_A          347 KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMS-SNFLGLEQLE  423 (635)
T ss_dssp             BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEEC-SCCTTCTTCC
T ss_pred             cchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccc-cccccccccc
Confidence            567788888888876643  2355789999999999986322222235667889999999998776543 3467888999


Q ss_pred             eeeccCcccCcCCC-CCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEE
Q 044980          151 FIVLSYNQFQGKIP-STLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSID  229 (313)
Q Consensus       151 ~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~  229 (313)
                      .+++..+......+ ..+..+++++.++++.|.+.+..+..+..++.++.  +++++|. ......|..+..+++|++|+
T Consensus       424 ~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~--L~Ls~N~-~~~~~~~~~~~~l~~L~~L~  500 (635)
T 4g8a_A          424 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV--LKMAGNS-FQENFLPDIFTELRNLTFLD  500 (635)
T ss_dssp             EEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE--EECTTCE-EGGGEECSCCTTCTTCCEEE
T ss_pred             chhhhhccccccccccccccccccccccccccccccccccccccchhhhh--hhhhhcc-cccccCchhhhhccccCEEE
Confidence            99999887765444 45778999999999999999888888999999999  9998872 13345788899999999999


Q ss_pred             ccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCC-CCCCEeeCC
Q 044980          230 FSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQI-SHLEYLDLS  304 (313)
Q Consensus       230 l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l-~~L~~L~l~  304 (313)
                      +++|.+++..|..+..++     +|+.|+|++|++++.    +..+++|++|++++|++++..|..+..+ ++|++|+++
T Consensus       501 Ls~N~L~~l~~~~f~~l~-----~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~  575 (635)
T 4g8a_A          501 LSQCQLEQLSPTAFNSLS-----SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT  575 (635)
T ss_dssp             CTTSCCCEECTTTTTTCT-----TCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECT
T ss_pred             CCCCccCCcChHHHcCCC-----CCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEee
Confidence            999999998888888888     999999999999876    7889999999999999998889999887 689999999


Q ss_pred             CCcCccc
Q 044980          305 NNKFVTK  311 (313)
Q Consensus       305 ~n~l~~~  311 (313)
                      +|+++.+
T Consensus       576 ~Np~~C~  582 (635)
T 4g8a_A          576 QNDFACT  582 (635)
T ss_dssp             TCCBCCS
T ss_pred             CCCCccc
Confidence            9998753

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.76  E-value=3.4e-18  Score=138.80  Aligned_cols=133  Identities=18%  Similarity=0.207  Sum_probs=76.5

Q ss_pred             cCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCC
Q 044980           94 GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSL  173 (313)
Q Consensus        94 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L  173 (313)
                      .++++|++|++++|.+    ..++.+..+++|++|++++|.+...  ..+..+++|++|++++|.+++..+..+..+++|
T Consensus        41 ~~l~~L~~L~l~~n~i----~~l~~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  114 (197)
T 4ezg_A           41 AQMNSLTYITLANINV----TDLTGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL  114 (197)
T ss_dssp             HHHHTCCEEEEESSCC----SCCTTGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred             hhcCCccEEeccCCCc----cChHHHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence            4456677777777664    2334566666777777776655432  235666667777777777665556666667777


Q ss_pred             CEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCC
Q 044980          174 KQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQ  237 (313)
Q Consensus       174 ~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  237 (313)
                      ++|++++|.+++..|..+..+++|++  |++++|  .....+| .+..+++|+.|++++|.+.+
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~--L~L~~n--~~i~~~~-~l~~l~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNS--IDLSYN--GAITDIM-PLKTLPELKSLNIQFDGVHD  173 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCE--EECCSC--TBCCCCG-GGGGCSSCCEEECTTBCCCC
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCE--EEccCC--CCccccH-hhcCCCCCCEEECCCCCCcC
Confidence            77777777666555555555555555  555554  2111122 34444455555555555443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=1.1e-17  Score=138.15  Aligned_cols=152  Identities=14%  Similarity=0.142  Sum_probs=90.8

Q ss_pred             eecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch--hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeec
Q 044980           77 YSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS--WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVL  154 (313)
Q Consensus        77 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  154 (313)
                      .+++++|.++. +|..+.  ..+++|+|++|.+.   ...+  .+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~---~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   88 (220)
T 2v70_A           15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFT---VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL   88 (220)
T ss_dssp             EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCC---EECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCC---ccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence            44455566653 555443  34567777777651   1111  2556666777777777666655555666666666666


Q ss_pred             cCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCC
Q 044980          155 SYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVK  234 (313)
Q Consensus       155 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~  234 (313)
                      ++|.+++..+..|..+++|++|++++|.+++..|..+..+++|+.  |++++|  .+.+..|..+..+++|+.|++++|.
T Consensus        89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~--L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL--LSLYDN--QITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSE--EECTTS--CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCE--EECCCC--cCCEECHHHhcCCCCCCEEEecCcC
Confidence            666666555555666666666666666666555555666666666  666665  4555555556666666666666666


Q ss_pred             CCCC
Q 044980          235 LSQD  238 (313)
Q Consensus       235 l~~~  238 (313)
                      +...
T Consensus       165 l~c~  168 (220)
T 2v70_A          165 FNCN  168 (220)
T ss_dssp             EECS
T ss_pred             CcCC
Confidence            5543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=2.4e-18  Score=152.82  Aligned_cols=171  Identities=21%  Similarity=0.225  Sum_probs=110.1

Q ss_pred             cEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhh-hcCccCeeeccCcccCcCCCCCCCCCCCCCEEE
Q 044980          100 QYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIY-SLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQID  177 (313)
Q Consensus       100 ~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  177 (313)
                      +.++++++.+.    .+| .+  ...++.|++++|.+++..+..+. .+++|++|++++|.+++..+..|..+++|++|+
T Consensus        21 ~~l~c~~~~l~----~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~   94 (361)
T 2xot_A           21 NILSCSKQQLP----NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD   94 (361)
T ss_dssp             TEEECCSSCCS----SCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CEEEeCCCCcC----ccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence            57777777752    233 12  23577888888888776666565 777788888888888766666777788888888


Q ss_pred             ccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhh---hhhccccccCc
Q 044980          178 LSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVL---DIFSAYGTYAL  254 (313)
Q Consensus       178 l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l---~~~~~~~~~~L  254 (313)
                      +++|.+++..+..|..+++|+.  |++++|  .+....|..+..+++|+.|++++|.+.+..+..+   ..++     +|
T Consensus        95 Ls~N~l~~~~~~~~~~l~~L~~--L~L~~N--~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~-----~L  165 (361)
T 2xot_A           95 LSSNHLHTLDEFLFSDLQALEV--LLLYNN--HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP-----KL  165 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCE--EECCSS--CCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CT-----TC
T ss_pred             CCCCcCCcCCHHHhCCCcCCCE--EECCCC--cccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCC-----cC
Confidence            8888877655556777777777  777777  5555566667777777777777777765433333   2333     55


Q ss_pred             cEEEccccccccc----ccCCCC--CCEEEccCCccc
Q 044980          255 VSLILSHCQISAA----LGKLSS--LRNLDFSLNMLN  285 (313)
Q Consensus       255 ~~L~Ls~n~l~~~----~~~~~~--L~~L~l~~n~l~  285 (313)
                      +.|+|++|++++.    +..++.  ++.|++++|.+.
T Consensus       166 ~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          166 MLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            6666666655543    333333  245555555554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=1.3e-17  Score=137.82  Aligned_cols=150  Identities=17%  Similarity=0.148  Sum_probs=102.3

Q ss_pred             ecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccC
Q 044980           78 SDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSY  156 (313)
Q Consensus        78 L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  156 (313)
                      ++++++.++. +|..+.  +.|++|++++|.+.   ...+ .+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus        16 v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~---~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           16 VDCRGKGLTE-IPTNLP--ETITEIRLEQNTIK---VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             EECTTSCCSS-CCSSCC--TTCCEEECCSSCCC---EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             EEcCCCCcCc-CCCccC--cCCCEEECCCCcCC---CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            4444565553 555443  57888888888751   1112 567778888888888888777677777888888888888


Q ss_pred             cccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCC
Q 044980          157 NQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLS  236 (313)
Q Consensus       157 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  236 (313)
                      |.++...+..|..+++|++|++++|.+++..|..+..+++|+.  |++++|  .+....+..+..+++|+.|++++|.+.
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~--L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL--LSLYDN--KLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE--EECCSS--CCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCE--EECCCC--cCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            8887444445677788888888888877766666777777777  666666  555555555666666667777666654


Q ss_pred             C
Q 044980          237 Q  237 (313)
Q Consensus       237 ~  237 (313)
                      .
T Consensus       166 c  166 (220)
T 2v9t_B          166 C  166 (220)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=6.2e-18  Score=150.14  Aligned_cols=176  Identities=20%  Similarity=0.166  Sum_probs=143.5

Q ss_pred             eecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhc-cCCCCCEEEcCCccCCCCCchhhhhcCccCeeec
Q 044980           77 YSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLS-SLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVL  154 (313)
Q Consensus        77 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  154 (313)
                      .++++++.+.. +|..+.  +.+++|+|++|.+.   ...+ .+. ++++|++|++++|.+++..+..+..+++|++|+|
T Consensus        22 ~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~---~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           22 ILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLS---RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             EEECCSSCCSS-CCSSCC--TTCSEEECCSSCCC---EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             EEEeCCCCcCc-cCccCC--CCCCEEECCCCCCC---ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence            45556677764 666553  46899999999962   2222 455 8999999999999999887778999999999999


Q ss_pred             cCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccccccccccccccc---ccCCCcCEEEcc
Q 044980          155 SYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSF---IRLCKLTSIDFS  231 (313)
Q Consensus       155 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~---~~~~~L~~L~l~  231 (313)
                      ++|.+++..+..|..+++|++|++++|.+++..|..+..+++|+.  |++++|  .+..+-+..+   ..+++|+.|+++
T Consensus        96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~--L~L~~N--~l~~l~~~~~~~~~~l~~L~~L~L~  171 (361)
T 2xot_A           96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK--LYLSQN--QISRFPVELIKDGNKLPKLMLLDLS  171 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE--EECCSS--CCCSCCGGGTC----CTTCCEEECC
T ss_pred             CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCE--EECCCC--cCCeeCHHHhcCcccCCcCCEEECC
Confidence            999999777778999999999999999999888889999999999  999999  6665444444   678999999999


Q ss_pred             CCCCCCCcchhhhhhccccccC--ccEEEccccccccc
Q 044980          232 SVKLSQDISQVLDIFSAYGTYA--LVSLILSHCQISAA  267 (313)
Q Consensus       232 ~n~l~~~~~~~l~~~~~~~~~~--L~~L~Ls~n~l~~~  267 (313)
                      +|.+.+..+..+..++     .  ++.|++++|.+...
T Consensus       172 ~N~l~~l~~~~~~~l~-----~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          172 SNKLKKLPLTDLQKLP-----AWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             SSCCCCCCHHHHHHSC-----HHHHTTEECCSSCEECC
T ss_pred             CCCCCccCHHHhhhcc-----HhhcceEEecCCCccCC
Confidence            9999987767777776     5  48899999998754

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.74  E-value=4.9e-18  Score=150.18  Aligned_cols=210  Identities=16%  Similarity=0.102  Sum_probs=153.7

Q ss_pred             ecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch--hhccCCCCCEEEcCCccCCCCCch-hhhhcCccCe-ee
Q 044980           78 SDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS--WLSSLLLLEHIDLGQVHLGKASDC-WIYSLRHLFF-IV  153 (313)
Q Consensus        78 L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~-L~  153 (313)
                      ++.++++++ .+|..+  .+++++|+|++|.+    ..+|  +|.++++|++|++++|.+.+.++. .+..++++.+ +.
T Consensus        14 v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i----~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~   86 (350)
T 4ay9_X           14 FLCQESKVT-EIPSDL--PRNAIELRFVLTKL----RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   86 (350)
T ss_dssp             EEEESTTCC-SCCTTC--CTTCSEEEEESCCC----SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred             EEecCCCCC-ccCcCc--CCCCCEEEccCCcC----CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence            334456665 467665  36899999999997    3344  588999999999999998775554 5778888665 66


Q ss_pred             ccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCC-CcCEEEccC
Q 044980          154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLC-KLTSIDFSS  232 (313)
Q Consensus       154 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~-~L~~L~l~~  232 (313)
                      +..|+++...|..|..+++|++|++++|.+.+..+..+.....+..  +++.++. .+..+-+..+..+. .++.|++++
T Consensus        87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~--l~l~~~~-~i~~l~~~~f~~~~~~l~~L~L~~  163 (350)
T 4ay9_X           87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL--LDIQDNI-NIHTIERNSFVGLSFESVILWLNK  163 (350)
T ss_dssp             EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEE--EEEESCT-TCCEECTTSSTTSBSSCEEEECCS
T ss_pred             ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhh--hhhcccc-ccccccccchhhcchhhhhhcccc
Confidence            7789999777888999999999999999998766655555666666  6665531 34444444555554 689999999


Q ss_pred             CCCCCCcchhhhhhccccccCccEEEccc-cccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCC
Q 044980          233 VKLSQDISQVLDIFSAYGTYALVSLILSH-CQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNN  306 (313)
Q Consensus       233 n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~-n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n  306 (313)
                      |.++. ++.......     +|+.+++++ |.++..    |..+++|++||+++|+|+ .+|..  .+.+|+.|.+.++
T Consensus       164 N~i~~-i~~~~f~~~-----~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~  233 (350)
T 4ay9_X          164 NGIQE-IHNSAFNGT-----QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARST  233 (350)
T ss_dssp             SCCCE-ECTTSSTTE-----EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTC
T ss_pred             ccccC-CChhhcccc-----chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccC
Confidence            99985 444444445     799999985 556544    788999999999999999 67753  3455666665443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.74  E-value=2.5e-18  Score=146.01  Aligned_cols=169  Identities=21%  Similarity=0.207  Sum_probs=136.7

Q ss_pred             CCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCC
Q 044980           95 NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLK  174 (313)
Q Consensus        95 ~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~  174 (313)
                      ++..+..++++.+.+    ..++.+..+++|++|++++|.++.. + .+..+++|++|++++|.+++. +. +..+++|+
T Consensus        17 ~l~~l~~l~l~~~~i----~~~~~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~   88 (263)
T 1xeu_A           17 GLANAVKQNLGKQSV----TDLVSQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLE   88 (263)
T ss_dssp             HHHHHHHHHHTCSCT----TSEECHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCC
T ss_pred             HHHHHHHHHhcCCCc----ccccchhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCC
Confidence            466788888988885    3455678899999999999999864 3 588899999999999999854 44 88999999


Q ss_pred             EEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCc
Q 044980          175 QIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYAL  254 (313)
Q Consensus       175 ~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L  254 (313)
                      +|++++|.+++ +|. +.. ++|+.  |++++|  .+...  ..+..+++|+.|++++|.+++. + .+..++     +|
T Consensus        89 ~L~L~~N~l~~-l~~-~~~-~~L~~--L~L~~N--~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~-----~L  152 (263)
T 1xeu_A           89 ELSVNRNRLKN-LNG-IPS-ACLSR--LFLDNN--ELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLS-----KL  152 (263)
T ss_dssp             EEECCSSCCSC-CTT-CCC-SSCCE--EECCSS--CCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCT-----TC
T ss_pred             EEECCCCccCC-cCc-ccc-CcccE--EEccCC--ccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCC-----CC
Confidence            99999999985 343 333 88999  899888  55542  3588889999999999999865 3 566666     89


Q ss_pred             cEEEccccccccc--ccCCCCCCEEEccCCccccc
Q 044980          255 VSLILSHCQISAA--LGKLSSLRNLDFSLNMLNGS  287 (313)
Q Consensus       255 ~~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~~~  287 (313)
                      +.|++++|++++.  +..+++|+.|++++|.+.+.
T Consensus       153 ~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          153 EVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CEEECTTSCCCBCTTSTTCCCCCEEEEEEEEEECC
T ss_pred             CEEECCCCcCcchHHhccCCCCCEEeCCCCcccCC
Confidence            9999999998877  77888999999999998843

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=9e-18  Score=142.51  Aligned_cols=171  Identities=15%  Similarity=0.137  Sum_probs=136.5

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF  150 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  150 (313)
                      .+.+++.++++.+.+++..  .+.++++|++|++++|.+    ..++.+..+++|++|++++|.+++..+  +..+++|+
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i----~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~   88 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNI----QSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLE   88 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCC----CCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCC
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCc----ccchHHhhCCCCCEEECCCCccCCChh--hccCCCCC
Confidence            3455677778888877533  477889999999999986    345578889999999999999988755  88899999


Q ss_pred             eeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEc
Q 044980          151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDF  230 (313)
Q Consensus       151 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l  230 (313)
                      +|++++|.+++ +|... . ++|++|++++|.+++. + .+..+++|+.  |++++|  .+.+. + .+..+++|+.|++
T Consensus        89 ~L~L~~N~l~~-l~~~~-~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~--L~Ls~N--~i~~~-~-~l~~l~~L~~L~L  157 (263)
T 1xeu_A           89 ELSVNRNRLKN-LNGIP-S-ACLSRLFLDNNELRDT-D-SLIHLKNLEI--LSIRNN--KLKSI-V-MLGFLSKLEVLDL  157 (263)
T ss_dssp             EEECCSSCCSC-CTTCC-C-SSCCEEECCSSCCSBS-G-GGTTCTTCCE--EECTTS--CCCBC-G-GGGGCTTCCEEEC
T ss_pred             EEECCCCccCC-cCccc-c-CcccEEEccCCccCCC-h-hhcCcccccE--EECCCC--cCCCC-h-HHccCCCCCEEEC
Confidence            99999999984 45433 3 8899999999998863 3 5888999999  999998  55553 3 6888999999999


Q ss_pred             cCCCCCCCcchhhhhhccccccCccEEEccccccccc
Q 044980          231 SSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA  267 (313)
Q Consensus       231 ~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~  267 (313)
                      ++|.+.+.  ..+..++     +|+.|++++|.+++.
T Consensus       158 ~~N~i~~~--~~l~~l~-----~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          158 HGNEITNT--GGLTRLK-----KVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TTSCCCBC--TTSTTCC-----CCCEEEEEEEEEECC
T ss_pred             CCCcCcch--HHhccCC-----CCCEEeCCCCcccCC
Confidence            99999876  5566666     899999999998765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.70  E-value=4.2e-19  Score=166.32  Aligned_cols=118  Identities=17%  Similarity=0.222  Sum_probs=80.0

Q ss_pred             CCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccc
Q 044980          172 SLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGT  251 (313)
Q Consensus       172 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~  251 (313)
                      .|+.|++++|.+++ +|. ++.+++|+.  |++++|  .+. .+|..++.+++|+.|++++|.+++ +| .+..++    
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~--L~Ls~N--~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~----  508 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTH--LDLSHN--RLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLP----  508 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCE--EECCSS--CCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCS----
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcE--eecCcc--ccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCC----
Confidence            36777777777764 454 677777777  777776  444 466777777777777777777776 44 566666    


Q ss_pred             cCccEEEccccccccc-----ccCCCCCCEEEccCCccccccCcc---ccCCCCCCEeeC
Q 044980          252 YALVSLILSHCQISAA-----LGKLSSLRNLDFSLNMLNGSIPLS---LGQISHLEYLDL  303 (313)
Q Consensus       252 ~~L~~L~Ls~n~l~~~-----~~~~~~L~~L~l~~n~l~~~ip~~---l~~l~~L~~L~l  303 (313)
                       +|+.|+|++|++++.     +..+++|+.|++++|.+++..|..   +..+++|+.|++
T Consensus       509 -~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          509 -RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             -SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             -CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence             777777777776543     566778888888888887543321   233678888764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.69  E-value=3e-16  Score=146.58  Aligned_cols=160  Identities=19%  Similarity=0.219  Sum_probs=130.7

Q ss_pred             CCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCe
Q 044980           72 FGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFF  151 (313)
Q Consensus        72 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  151 (313)
                      +++|+.|++++|.++ .+|   ..+++|++|++++|.+..    +|.+.+  +|++|++++|.+++. |.   .+++|++
T Consensus        79 ~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~----ip~l~~--~L~~L~Ls~N~l~~l-p~---~l~~L~~  144 (571)
T 3cvr_A           79 PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST----LPELPA--SLKHLDVDNNQLTML-PE---LPALLEY  144 (571)
T ss_dssp             CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC----CCCCCT--TCCEEECCSSCCSCC-CC---CCTTCCE
T ss_pred             cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC----cchhhc--CCCEEECCCCcCCCC-CC---cCccccE
Confidence            478999999999998 577   457999999999999732    444443  999999999999984 44   6888999


Q ss_pred             eeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCc------
Q 044980          152 IVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKL------  225 (313)
Q Consensus       152 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L------  225 (313)
                      |++++|.+++ +|.   .+++|++|++++|.+++ +|. +.  ++|+.  |++++|  .+. .+|. +..  +|      
T Consensus       145 L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~--L~Ls~N--~L~-~lp~-~~~--~L~~~~~~  208 (571)
T 3cvr_A          145 INADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEA--LDVSTN--LLE-SLPA-VPV--RNHHSEET  208 (571)
T ss_dssp             EECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCE--EECCSS--CCS-SCCC-CC----------C
T ss_pred             EeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCE--EECcCC--CCC-chhh-HHH--hhhccccc
Confidence            9999999995 676   57899999999999986 666 55  89999  999999  555 4566 544  67      


Q ss_pred             -CEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc
Q 044980          226 -TSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA  267 (313)
Q Consensus       226 -~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~  267 (313)
                       +.|++++|.++. +|..+..++     +|+.|+|++|.+++.
T Consensus       209 L~~L~Ls~N~l~~-lp~~l~~l~-----~L~~L~L~~N~l~~~  245 (571)
T 3cvr_A          209 EIFFRCRENRITH-IPENILSLD-----PTCTIILEDNPLSSR  245 (571)
T ss_dssp             CEEEECCSSCCCC-CCGGGGGSC-----TTEEEECCSSSCCHH
T ss_pred             ceEEecCCCccee-cCHHHhcCC-----CCCEEEeeCCcCCCc
Confidence             999999999995 677777787     999999999999876

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=2.3e-18  Score=161.34  Aligned_cols=193  Identities=18%  Similarity=0.135  Sum_probs=99.1

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCC----------CCCCCCch-hhccCCCCCEEE-cCCccCCCC
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDC----------RLHVDSLS-WLSSLLLLEHID-LGQVHLGKA  138 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~----------~~~~~~~~-~~~~l~~L~~L~-l~~n~l~~~  138 (313)
                      ..++|+.|++++|.+. .+|..++++++|++|++++|..          ....+..| .+..+++|+.|+ ++.|.+...
T Consensus       347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            3455666666666654 4566666666666666644420          00011122 344455555555 333322110


Q ss_pred             Cch-----hhhhc--CccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccccccc
Q 044980          139 SDC-----WIYSL--RHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRF  211 (313)
Q Consensus       139 ~~~-----~~~~l--~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~  211 (313)
                      ...     .+..+  ..|++|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|+.  |++++|  .+
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~--L~Ls~N--~l  498 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEV--LQASDN--AL  498 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCE--EECCSS--CC
T ss_pred             hhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCE--EECCCC--CC
Confidence            000     01111  135566666666653 444 556666666666666665 55556666666666  666665  44


Q ss_pred             ccccccccccCCCcCEEEccCCCCCCCc-chhhhhhccccccCccEEEccccccccc-------ccCCCCCCEEE
Q 044980          212 HQLIPTSFIRLCKLTSIDFSSVKLSQDI-SQVLDIFSAYGTYALVSLILSHCQISAA-------LGKLSSLRNLD  278 (313)
Q Consensus       212 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~~~~~~L~~L~Ls~n~l~~~-------~~~~~~L~~L~  278 (313)
                      .+ +| .++.+++|+.|++++|.+++.. |..+..++     +|+.|++++|.+++.       +..+++|+.|+
T Consensus       499 ~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~-----~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          499 EN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCP-----RLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCT-----TCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCC-----CCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            43 44 5566666666666666666554 55555555     666666666665544       22245555554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.66  E-value=3e-17  Score=158.16  Aligned_cols=142  Identities=18%  Similarity=0.121  Sum_probs=97.1

Q ss_pred             ccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCC
Q 044980           89 SKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTL  167 (313)
Q Consensus        89 ~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~  167 (313)
                      .+..+..++.|++|+|++|.+   . .+| .+.++++|++|++++|.++ .+|..+..+++|++|+|++|.++ .+|..+
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l---~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~  289 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQI---F-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL  289 (727)
T ss_dssp             ------CCCCCCEEECTTSCC---S-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSG
T ss_pred             ChhhhccCCCCcEEECCCCCC---C-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhh
Confidence            355567777788888887775   2 333 4557777888888888777 55666777777888888888877 677777


Q ss_pred             CCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCC-CcCEEEccCCCCCCCcch
Q 044980          168 GNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLC-KLTSIDFSSVKLSQDISQ  241 (313)
Q Consensus       168 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~  241 (313)
                      ..+++|++|+|++|.++ .+|..++.+++|+.  |++++|  .+.+.+|..+..+. ....+++++|.+.+.+|.
T Consensus       290 ~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~--L~L~~N--~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          290 GSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQF--LGVEGN--PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             GGGTTCSEEECCSSCCC-CCCSSTTSCTTCCC--EECTTS--CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             cCCCCCCEEECCCCCCC-ccChhhhcCCCccE--EeCCCC--ccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence            77788888888888776 56766777778887  777777  66666666665442 123466777777777665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.66  E-value=7.5e-18  Score=158.98  Aligned_cols=230  Identities=12%  Similarity=0.064  Sum_probs=135.7

Q ss_pred             CCCCcceecCCCCcccccccccccC-CCC-CcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCC----chhh
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGN-LSN-LQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKAS----DCWI  143 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~-l~~-L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~----~~~~  143 (313)
                      .+++|+.|++++|.+++..+..+.. ++. |++|++++|.. .....++ ....+++|++|++++|.+++..    +..+
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~-~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~  188 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG-FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA  188 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE-EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC-cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence            4567777777777776655555544 333 77777776651 0111122 2336788888888888776653    3345


Q ss_pred             hhcCccCeeeccCcccCc----CCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccc---------
Q 044980          144 YSLRHLFFIVLSYNQFQG----KIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVR---------  210 (313)
Q Consensus       144 ~~l~~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~---------  210 (313)
                      ..+++|++|++++|.+++    .++..+.++++|++|++++|.+.+ +|..+..+++|+.  +.++.+...         
T Consensus       189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~--L~l~~~~~~~~~~~~~~~  265 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEE--FCGGSLNEDIGMPEKYMN  265 (592)
T ss_dssp             HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCE--EEECBCCCCTTCTTSSSC
T ss_pred             hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHh--hcccccccccchHHHHHH
Confidence            667778888888887762    233444567888888888887764 5666777777777  555422000         


Q ss_pred             ---------------cccccccccccCCCcCEEEccCCCCCCCcc-hhhhhhccccccCccEEEccccccccc-----cc
Q 044980          211 ---------------FHQLIPTSFIRLCKLTSIDFSSVKLSQDIS-QVLDIFSAYGTYALVSLILSHCQISAA-----LG  269 (313)
Q Consensus       211 ---------------~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~~~~~~L~~L~Ls~n~l~~~-----~~  269 (313)
                                     ....+|..+..+++|++|++++|.+.+... ..+..++     +|+.|+++ +.+.+.     ..
T Consensus       266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~-----~L~~L~L~-~~~~~~~l~~~~~  339 (592)
T 3ogk_B          266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP-----NLEVLETR-NVIGDRGLEVLAQ  339 (592)
T ss_dssp             CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT-----TCCEEEEE-GGGHHHHHHHHHH
T ss_pred             hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc-----CCCEEecc-CccCHHHHHHHHH
Confidence                           112244555556667777776666544322 2233444     67777766 333322     34


Q ss_pred             CCCCCCEEEccC-----------Cccccc-cCccccCCCCCCEeeCCCCcCcc
Q 044980          270 KLSSLRNLDFSL-----------NMLNGS-IPLSLGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       270 ~~~~L~~L~l~~-----------n~l~~~-ip~~l~~l~~L~~L~l~~n~l~~  310 (313)
                      .+++|++|++++           |.+++. ++.....+++|++|+++.|.+++
T Consensus       340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~  392 (592)
T 3ogk_B          340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN  392 (592)
T ss_dssp             HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH
T ss_pred             hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH
Confidence            566777777772           455532 22223446777777777676654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.65  E-value=6.7e-16  Score=121.82  Aligned_cols=129  Identities=19%  Similarity=0.223  Sum_probs=85.8

Q ss_pred             CccCeeeccCcccC-cCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCc
Q 044980          147 RHLFFIVLSYNQFQ-GKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKL  225 (313)
Q Consensus       147 ~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L  225 (313)
                      ++|++|++++|.++ +.+|..+..+++|++|++++|.+++.                              ..+..+++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~------------------------------~~~~~l~~L   73 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV------------------------------SNLPKLPKL   73 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC------------------------------SSCCCCSSC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh------------------------------hhhccCCCC
Confidence            44566666666655 45555555555666666666555432                              334455667


Q ss_pred             CEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc-----ccCCCCCCEEEccCCccccccC---ccccCCCC
Q 044980          226 TSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA-----LGKLSSLRNLDFSLNMLNGSIP---LSLGQISH  297 (313)
Q Consensus       226 ~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~-----~~~~~~L~~L~l~~n~l~~~ip---~~l~~l~~  297 (313)
                      ++|++++|.+.+.+|..+..++     +|+.|++++|.+++.     +..+++|++|++++|.+++..+   ..+..+++
T Consensus        74 ~~L~Ls~N~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~  148 (168)
T 2ell_A           74 KKLELSENRIFGGLDMLAEKLP-----NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQ  148 (168)
T ss_dssp             CEEEEESCCCCSCCCHHHHHCT-----TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSS
T ss_pred             CEEECcCCcCchHHHHHHhhCC-----CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCcc
Confidence            7777777777766666666666     777777777777653     5677888888888888884333   36778888


Q ss_pred             CCEeeCCCCcCcc
Q 044980          298 LEYLDLSNNKFVT  310 (313)
Q Consensus       298 L~~L~l~~n~l~~  310 (313)
                      |++|++++|.+..
T Consensus       149 L~~L~l~~n~~~~  161 (168)
T 2ell_A          149 LTYLDGYDREDQE  161 (168)
T ss_dssp             CCEETTEETTSCB
T ss_pred             CcEecCCCCChhh
Confidence            8888888887754

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.65  E-value=7e-17  Score=152.33  Aligned_cols=226  Identities=11%  Similarity=0.004  Sum_probs=112.1

Q ss_pred             CCCCcceecCCCCccccc----ccccccCCCCCcEeeccCCCCCCC-CCCch-hhccCCCCCEEEcCCccCCCCCchhhh
Q 044980           71 PFGYLKYSDAEDDDHYMR----SKLVVGNLSNLQYLDLSWIDCRLH-VDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIY  144 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~L~~n~~~~~-~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~  144 (313)
                      .+++|+.|++++|.+.+.    ++..+.+++.|++|++++|.+... ...++ .+..+++|++|++++|.+.+ .+..+.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~  240 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK  240 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence            456677777776665544    333344566677777766664210 01222 24456777777777776655 345566


Q ss_pred             hcCccCeeeccCcccC---cCCCCCCCCCC-----------------------CCCEEEccCCCCCCCCc-hhhhcCccc
Q 044980          145 SLRHLFFIVLSYNQFQ---GKIPSTLGNLT-----------------------SLKQIDLSHNQFNFTSP-GWLSKLNEL  197 (313)
Q Consensus       145 ~l~~L~~L~L~~n~~~---~~~~~~~~~l~-----------------------~L~~L~l~~n~l~~~~p-~~~~~l~~L  197 (313)
                      .+++|++|.++.....   +..+..+..++                       +|++|++++|.+++... ..+..+++|
T Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L  320 (592)
T 3ogk_B          241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL  320 (592)
T ss_dssp             HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred             hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence            6666776666532111   11122333334                       44444444444332211 223344444


Q ss_pred             ccccccccccccccccccccccccCCCcCEEEcc-----------CCCCCCCcchh-hhhhccccccCccEEEccccccc
Q 044980          198 SSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFS-----------SVKLSQDISQV-LDIFSAYGTYALVSLILSHCQIS  265 (313)
Q Consensus       198 ~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~-----------~n~l~~~~~~~-l~~~~~~~~~~L~~L~Ls~n~l~  265 (313)
                      +.  |++..+  .....++.....+++|++|+++           .|.+++..... ...++     +|+.|+++.+.++
T Consensus       321 ~~--L~L~~~--~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-----~L~~L~l~~~~l~  391 (592)
T 3ogk_B          321 EV--LETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ-----ELEYMAVYVSDIT  391 (592)
T ss_dssp             CE--EEEEGG--GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT-----TCSEEEEEESCCC
T ss_pred             CE--EeccCc--cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCc-----cCeEEEeecCCcc
Confidence            44  433322  1111123333445566666666           23443321111 22233     6666666666665


Q ss_pred             cc----cc-CCCCCCEEEcc----CCccccc-----cCccccCCCCCCEeeCCCC
Q 044980          266 AA----LG-KLSSLRNLDFS----LNMLNGS-----IPLSLGQISHLEYLDLSNN  306 (313)
Q Consensus       266 ~~----~~-~~~~L~~L~l~----~n~l~~~-----ip~~l~~l~~L~~L~l~~n  306 (313)
                      +.    +. .+++|+.|+++    .|.+++.     ++..+..+++|++|++++|
T Consensus       392 ~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~  446 (592)
T 3ogk_B          392 NESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR  446 (592)
T ss_dssp             HHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECC
T ss_pred             HHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecC
Confidence            54    22 26667777775    4555542     3334555677777777543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.65  E-value=3.8e-16  Score=120.76  Aligned_cols=129  Identities=16%  Similarity=0.140  Sum_probs=105.5

Q ss_pred             CCCCcceecCCCCccc-ccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCcc
Q 044980           71 PFGYLKYSDAEDDDHY-MRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHL  149 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  149 (313)
                      ..++|+.|++++|.+. +.+|..+..+++|++|++++|.+..    ++.+..+++|++|++++|.+++.+|..+..+++|
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L   90 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS----IANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL   90 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC----CTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC----chhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence            3467888999999998 7788888899999999999998622    2668889999999999999998778878889999


Q ss_pred             CeeeccCcccCcC-CCCCCCCCCCCCEEEccCCCCCCCCc---hhhhcCccccccccccc
Q 044980          150 FFIVLSYNQFQGK-IPSTLGNLTSLKQIDLSHNQFNFTSP---GWLSKLNELSSFLLNLV  205 (313)
Q Consensus       150 ~~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p---~~~~~l~~L~~~~L~l~  205 (313)
                      ++|++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|+.  ++++
T Consensus        91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~--L~l~  148 (149)
T 2je0_A           91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY--LDGY  148 (149)
T ss_dssp             CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE--ETTB
T ss_pred             CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc--ccCC
Confidence            9999999998853 33778889999999999999886555   46777777777  5543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=6.7e-16  Score=121.82  Aligned_cols=131  Identities=18%  Similarity=0.148  Sum_probs=103.3

Q ss_pred             CCCCcceecCCCCccc-ccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCcc
Q 044980           71 PFGYLKYSDAEDDDHY-MRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHL  149 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  149 (313)
                      ..++|+.|++++|.+. +.+|..+..+++|++|++++|.+..    ++.+..+++|++|++++|.+.+.+|..+..+++|
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   97 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS----VSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL   97 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC----CSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC----hhhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence            4467888888889987 6788878889999999999998622    2667888999999999999988777777789999


Q ss_pred             CeeeccCcccCcCC-CCCCCCCCCCCEEEccCCCCCCCCc---hhhhcCccccccccccccc
Q 044980          150 FFIVLSYNQFQGKI-PSTLGNLTSLKQIDLSHNQFNFTSP---GWLSKLNELSSFLLNLVSC  207 (313)
Q Consensus       150 ~~L~L~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p---~~~~~l~~L~~~~L~l~~n  207 (313)
                      ++|++++|.+++.. +..+..+++|++|++++|.+++..+   ..+..+++|+.  +++.+|
T Consensus        98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~--L~l~~n  157 (168)
T 2ell_A           98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY--LDGYDR  157 (168)
T ss_dssp             CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE--ETTEET
T ss_pred             CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE--ecCCCC
Confidence            99999999888432 2677888899999999998875544   35666677776  666665

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.64  E-value=1.1e-15  Score=123.48  Aligned_cols=129  Identities=18%  Similarity=0.285  Sum_probs=75.3

Q ss_pred             CeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCch-hhhcCcccccccccccccccccccccccccccCCCcCEE
Q 044980          150 FFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPG-WLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSI  228 (313)
Q Consensus       150 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L  228 (313)
                      +++++++|.++ .+|..+..  ++++|++++|.+.+..+. .+..+++|++  |++++|  .+.+..|..+..+++|++|
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~--L~Ls~N--~l~~~~~~~~~~l~~L~~L   83 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVK--LELKRN--QLTGIEPNAFEGASHIQEL   83 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCE--EECCSS--CCCCBCTTTTTTCTTCCEE
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCE--EECCCC--CCCCcCHhHcCCcccCCEE
Confidence            67888888886 67775543  788888888888754443 3555555555  555555  4444445555555555555


Q ss_pred             EccCCCCCCCcchhhhhhccccccCccEEEcccccccccccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcC
Q 044980          229 DFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF  308 (313)
Q Consensus       229 ~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l  308 (313)
                      ++++|.+.+..+..+.                         .+++|++|++++|++++.+|..+..+++|++|++++|.+
T Consensus        84 ~Ls~N~l~~~~~~~~~-------------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           84 QLGENKIKEISNKMFL-------------------------GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             ECCSCCCCEECSSSST-------------------------TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             ECCCCcCCccCHHHhc-------------------------CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence            5555555544443333                         444555555555555544455555555555555555555


Q ss_pred             cc
Q 044980          309 VT  310 (313)
Q Consensus       309 ~~  310 (313)
                      ++
T Consensus       139 ~c  140 (192)
T 1w8a_A          139 NC  140 (192)
T ss_dssp             CC
T ss_pred             cC
Confidence            44

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.64  E-value=9.7e-16  Score=123.73  Aligned_cols=113  Identities=25%  Similarity=0.345  Sum_probs=58.9

Q ss_pred             CCCEEEcCCccCCCCCch-hhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccc
Q 044980          124 LLEHIDLGQVHLGKASDC-WIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLL  202 (313)
Q Consensus       124 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L  202 (313)
                      .+++|++++|.+++..+. .+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+..+..+++|++  |
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~--L  107 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT--L  107 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCE--E
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCE--E
Confidence            444444444444443332 2444555555555555555444445555555555555555555444444444455555  4


Q ss_pred             cccccccccccccccccccCCCcCEEEccCCCCCCCcc
Q 044980          203 NLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDIS  240 (313)
Q Consensus       203 ~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  240 (313)
                      ++++|  .+.+..|..+..+++|++|++++|.+.+..+
T Consensus       108 ~L~~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          108 NLYDN--QISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             ECCSS--CCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             ECCCC--cCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            55444  4444455556666677777777777766543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=2.1e-15  Score=116.50  Aligned_cols=127  Identities=18%  Similarity=0.179  Sum_probs=83.5

Q ss_pred             CCCCEEEcCCccCC-CCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccc
Q 044980          123 LLLEHIDLGQVHLG-KASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFL  201 (313)
Q Consensus       123 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~  201 (313)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|+.  
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~--   92 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH--   92 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE--
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE--
Confidence            45666666666665 44555556666777777777776643  55667777777777777777666666666777777  


Q ss_pred             ccccccccccccc-cccccccCCCcCEEEccCCCCCCCcc---hhhhhhccccccCccEEEcc
Q 044980          202 LNLVSCMVRFHQL-IPTSFIRLCKLTSIDFSSVKLSQDIS---QVLDIFSAYGTYALVSLILS  260 (313)
Q Consensus       202 L~l~~n~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~---~~l~~~~~~~~~~L~~L~Ls  260 (313)
                      +++++|  .+.+. .+..++.+++|++|++++|.+.+..+   ..+..++     +|+.|+++
T Consensus        93 L~ls~N--~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~-----~L~~L~l~  148 (149)
T 2je0_A           93 LNLSGN--KIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLP-----QLTYLDGY  148 (149)
T ss_dssp             EECTTS--CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCT-----TCCEETTB
T ss_pred             EECCCC--cCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCC-----CcccccCC
Confidence            777666  44442 33566777777888888777776544   3566666     67777664

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.59  E-value=7.3e-15  Score=116.88  Aligned_cols=136  Identities=20%  Similarity=0.157  Sum_probs=104.9

Q ss_pred             CCcccCceEecCCCCCEEEEecCCCCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCC
Q 044980           47 DCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLL  125 (313)
Q Consensus        47 ~~c~~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L  125 (313)
                      ..|.|.++.|...  +++.+.. .-.++|+.|++++|.+.+..+..+.++++|++|++++|.+   ....+ .+..+++|
T Consensus         5 C~C~~~~l~~~~~--~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L   78 (177)
T 2o6r_A            5 CSCSGTEIRCNSK--GLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI---QSLPDGVFDKLTKL   78 (177)
T ss_dssp             CEEETTEEECCSS--CCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC---CCCCTTTTTTCTTC
T ss_pred             CEeCCCEEEecCC--CCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcc---eEeChhHccCCCcc
Confidence            4488999999642  2333322 2447899999999998876666678899999999999986   22222 46788999


Q ss_pred             CEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCc
Q 044980          126 EHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSP  188 (313)
Q Consensus       126 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  188 (313)
                      ++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|
T Consensus        79 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           79 TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            999999999988777777888999999999999985555556788999999999998886544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.59  E-value=6.1e-17  Score=131.45  Aligned_cols=130  Identities=22%  Similarity=0.203  Sum_probs=80.3

Q ss_pred             CCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhh
Q 044980          166 TLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDI  245 (313)
Q Consensus       166 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  245 (313)
                      .+..+++|++|++++|.+++ +| .+..+++|+.  |++++|  .+. .+|..+..+++|+.|++++|.+.+ +| .+..
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~--L~l~~n--~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~  113 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRI--LSLGRN--LIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEK  113 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCE--EEEEEE--EEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHH
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCE--EECCCC--Ccc-cccchhhcCCcCCEEECcCCcCCc-CC-cccc
Confidence            33344444444444444443 33 3444444444  444444  222 234444455667777777777775 33 4666


Q ss_pred             hccccccCccEEEccccccccc-----ccCCCCCCEEEccCCccccccCcc----------ccCCCCCCEeeCCCCcCcc
Q 044980          246 FSAYGTYALVSLILSHCQISAA-----LGKLSSLRNLDFSLNMLNGSIPLS----------LGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       246 ~~~~~~~~L~~L~Ls~n~l~~~-----~~~~~~L~~L~l~~n~l~~~ip~~----------l~~l~~L~~L~l~~n~l~~  310 (313)
                      ++     +|+.|++++|++++.     +..+++|++|++++|.+.+.+|..          +..+++|++||  +|.++.
T Consensus       114 l~-----~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          114 LV-----NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HH-----HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CC-----CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            66     788888888887753     677888888888888887665542          67788898887  677765


Q ss_pred             c
Q 044980          311 K  311 (313)
Q Consensus       311 ~  311 (313)
                      +
T Consensus       187 ~  187 (198)
T 1ds9_A          187 D  187 (198)
T ss_dssp             T
T ss_pred             H
Confidence            4

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.55  E-value=7e-14  Score=111.14  Aligned_cols=114  Identities=22%  Similarity=0.207  Sum_probs=65.0

Q ss_pred             CCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccc
Q 044980          123 LLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLL  202 (313)
Q Consensus       123 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L  202 (313)
                      ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.  +
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~--L  105 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKE--L  105 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE--E
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCE--E
Confidence            35555555555555444444455555666666666555433444555666666666666665444444555555555  5


Q ss_pred             cccccccccccccccccccCCCcCEEEccCCCCCCCcc
Q 044980          203 NLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDIS  240 (313)
Q Consensus       203 ~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  240 (313)
                      ++++|  .+....+..+..+++|++|++++|.+.+..+
T Consensus       106 ~l~~N--~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          106 ALDTN--QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             ECCSS--CCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ECcCC--cceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            55555  3443333445666777888888888776654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.54  E-value=3.3e-14  Score=114.75  Aligned_cols=127  Identities=19%  Similarity=0.158  Sum_probs=94.4

Q ss_pred             cEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEc
Q 044980          100 QYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDL  178 (313)
Q Consensus       100 ~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l  178 (313)
                      ++++++++.+.    .+| .+  .+.|++|++++|.++. +|..+..+++|++|++++|.+++..+..|.++++|++|++
T Consensus        13 ~~l~~~~~~l~----~ip~~~--~~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L   85 (193)
T 2wfh_A           13 TVVRCSNKGLK----VLPKGI--PRDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL   85 (193)
T ss_dssp             TEEECTTSCCS----SCCSCC--CTTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CEEEcCCCCCC----cCCCCC--CCCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence            57888888762    233 12  2578888888888874 4567888888888888888888766677888888888888


Q ss_pred             cCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCC
Q 044980          179 SHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQ  237 (313)
Q Consensus       179 ~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  237 (313)
                      ++|.+++..|..|..+++|+.  |++++|  .+....+..+..+++|+.|++++|.+..
T Consensus        86 s~N~l~~i~~~~f~~l~~L~~--L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           86 SYNRLRCIPPRTFDGLKSLRL--LSLHGN--DISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCE--EECCSS--CCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCccCEeCHHHhCCCCCCCE--EECCCC--CCCeeChhhhhcCccccEEEeCCCCeec
Confidence            888888777777777777777  777777  5555555566777777777777777654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.54  E-value=3.2e-16  Score=147.81  Aligned_cols=207  Identities=13%  Similarity=0.057  Sum_probs=133.0

Q ss_pred             ccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCC-CchhhhhcCccCeeeccC---------cccCc
Q 044980           93 VGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKA-SDCWIYSLRHLFFIVLSY---------NQFQG  161 (313)
Q Consensus        93 l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~---------n~~~~  161 (313)
                      +..+++|++|++++|.+  ....+. .+..+++|++|++++| ++.. .+.....+++|++|++.+         +.+++
T Consensus       285 ~~~~~~L~~L~L~~~~l--~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~  361 (594)
T 2p1m_B          285 YSVCSRLTTLNLSYATV--QSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE  361 (594)
T ss_dssp             HHHHTTCCEEECTTCCC--CHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred             HHhhCCCCEEEccCCCC--CHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH
Confidence            33567788888877774  211222 2556778888888777 3322 222233577788887743         23332


Q ss_pred             CCCCCC-CCCCCCCEEEccCCCCCCCCchhhh-cCccccccccccc--c--cccccc-----cccccccccCCCcCEEEc
Q 044980          162 KIPSTL-GNLTSLKQIDLSHNQFNFTSPGWLS-KLNELSSFLLNLV--S--CMVRFH-----QLIPTSFIRLCKLTSIDF  230 (313)
Q Consensus       162 ~~~~~~-~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~~~L~l~--~--n~~~~~-----~~~~~~~~~~~~L~~L~l  230 (313)
                      .....+ ..+++|++|.+..+.+++..+..+. .+++|+.  |+++  +  ....+.     ..++..+..+++|+.|++
T Consensus       362 ~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~--L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L  439 (594)
T 2p1m_B          362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTR--FRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL  439 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCE--EEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC
T ss_pred             HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcce--eEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee
Confidence            111112 2367888888877877765544554 4788888  7766  2  001222     123334667788999999


Q ss_pred             cCCCCCCCcchhhhh-hccccccCccEEEccccccccc-----ccCCCCCCEEEccCCccccccCc-cccCCCCCCEeeC
Q 044980          231 SSVKLSQDISQVLDI-FSAYGTYALVSLILSHCQISAA-----LGKLSSLRNLDFSLNMLNGSIPL-SLGQISHLEYLDL  303 (313)
Q Consensus       231 ~~n~l~~~~~~~l~~-~~~~~~~~L~~L~Ls~n~l~~~-----~~~~~~L~~L~l~~n~l~~~ip~-~l~~l~~L~~L~l  303 (313)
                      ++ .+++..+..+.. ++     +|+.|++++|.+++.     ...+++|++|++++|.+++..+. .+..+++|++|++
T Consensus       440 ~~-~l~~~~~~~l~~~~~-----~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l  513 (594)
T 2p1m_B          440 SG-LLTDKVFEYIGTYAK-----KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWM  513 (594)
T ss_dssp             CS-SCCHHHHHHHHHHCT-----TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEE
T ss_pred             cC-cccHHHHHHHHHhch-----hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEee
Confidence            77 666655555554 45     899999999998765     26689999999999998754443 3455789999999


Q ss_pred             CCCcCcc
Q 044980          304 SNNKFVT  310 (313)
Q Consensus       304 ~~n~l~~  310 (313)
                      ++|+++.
T Consensus       514 ~~~~~~~  520 (594)
T 2p1m_B          514 SSCSVSF  520 (594)
T ss_dssp             ESSCCBH
T ss_pred             eCCCCCH
Confidence            9998853

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.53  E-value=9.7e-14  Score=112.00  Aligned_cols=122  Identities=21%  Similarity=0.241  Sum_probs=100.7

Q ss_pred             eecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCc-hhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeecc
Q 044980           77 YSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSL-SWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLS  155 (313)
Q Consensus        77 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  155 (313)
                      .++++++.++ .+|..+.  +.|++|++++|.+.    .+ +.+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~----~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls   86 (193)
T 2wfh_A           14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT----LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS   86 (193)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC----SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc----hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence            4555667766 4565543  68999999999862    33 478889999999999999998877788899999999999


Q ss_pred             CcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccc
Q 044980          156 YNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSC  207 (313)
Q Consensus       156 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n  207 (313)
                      +|.+++..+..|..+++|++|++++|.++...+..+..+++|+.  +++.+|
T Consensus        87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~--L~L~~N  136 (193)
T 2wfh_A           87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH--LAIGAN  136 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE--EECCSS
T ss_pred             CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccE--EEeCCC
Confidence            99999777778889999999999999998666667888999999  888888

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.52  E-value=1.2e-15  Score=143.90  Aligned_cols=230  Identities=16%  Similarity=0.137  Sum_probs=114.4

Q ss_pred             CCCcceecCCCCccccccccccc-CCCCCcEeeccCCCCCCCCCCchh-hccCCCCCEEEcCCccCCCCCchhhh----h
Q 044980           72 FGYLKYSDAEDDDHYMRSKLVVG-NLSNLQYLDLSWIDCRLHVDSLSW-LSSLLLLEHIDLGQVHLGKASDCWIY----S  145 (313)
Q Consensus        72 l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~L~~n~~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~----~  145 (313)
                      +++|+.|+++++.+++..+..+. .+++|++|++++|.. .....++. +.++++|++|++++|.+++..+.++.    .
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~-~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG-FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE-EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC-CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            45566666666665555444443 456666666666521 01111222 23566666666666665554443333    3


Q ss_pred             cCccCeeeccCcc--cCc-CCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccc--------------
Q 044980          146 LRHLFFIVLSYNQ--FQG-KIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCM--------------  208 (313)
Q Consensus       146 l~~L~~L~L~~n~--~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~--------------  208 (313)
                      +++|++|++++|.  +.. .++..+..+++|++|++++|...+.++..+..+++|+.  +.+..+.              
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~--L~l~~~~~~~~~~~~~~l~~~  260 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEE--LGTGGYTAEVRPDVYSGLSVA  260 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSE--EECSBCCCCCCHHHHHHHHHH
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceE--cccccccCccchhhHHHHHHH
Confidence            3456666666654  110 01111123466666666666322224444555555555  4322210              


Q ss_pred             ----c----------ccccccccccccCCCcCEEEccCCCCCCCcch-hhhhhccccccCccEEEccccccccc-----c
Q 044980          209 ----V----------RFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQ-VLDIFSAYGTYALVSLILSHCQISAA-----L  268 (313)
Q Consensus       209 ----~----------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~~~~~~~~~L~~L~Ls~n~l~~~-----~  268 (313)
                          .          .....++..+..+++|++|++++|.+.+.... .+..++     +|+.|++++| +++.     .
T Consensus       261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~-----~L~~L~l~~~-~~~~~l~~l~  334 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCP-----KLQRLWVLDY-IEDAGLEVLA  334 (594)
T ss_dssp             HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCT-----TCCEEEEEGG-GHHHHHHHHH
T ss_pred             HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCC-----CcCEEeCcCc-cCHHHHHHHH
Confidence                0          00111333334566777777777775533222 223344     7777777766 4322     2


Q ss_pred             cCCCCCCEEEcc---------CCccccccCcccc-CCCCCCEeeCCCCcCcc
Q 044980          269 GKLSSLRNLDFS---------LNMLNGSIPLSLG-QISHLEYLDLSNNKFVT  310 (313)
Q Consensus       269 ~~~~~L~~L~l~---------~n~l~~~ip~~l~-~l~~L~~L~l~~n~l~~  310 (313)
                      ..+++|++|++.         .+.+++.....+. .+++|++|+++.|.+++
T Consensus       335 ~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~  386 (594)
T 2p1m_B          335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTN  386 (594)
T ss_dssp             HHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCH
T ss_pred             HhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCH
Confidence            346777777773         2344433222232 36777777777776654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.51  E-value=3.6e-14  Score=112.77  Aligned_cols=106  Identities=16%  Similarity=0.126  Sum_probs=54.5

Q ss_pred             CCCcceecCCCCcccccccccccCCC-CCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980           72 FGYLKYSDAEDDDHYMRSKLVVGNLS-NLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF  150 (313)
Q Consensus        72 l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  150 (313)
                      .++|+.|++++|.+.. ++. +..+. +|++|++++|.+.    .++.+..+++|++|++++|.+++..+..+..+++|+
T Consensus        18 ~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~----~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIR----KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             TTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCC----EECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCC----cccccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            3455555555555553 232 33333 5666666665541    123455555556666666555544333345555555


Q ss_pred             eeeccCcccCcCCCC--CCCCCCCCCEEEccCCCCC
Q 044980          151 FIVLSYNQFQGKIPS--TLGNLTSLKQIDLSHNQFN  184 (313)
Q Consensus       151 ~L~L~~n~~~~~~~~--~~~~l~~L~~L~l~~n~l~  184 (313)
                      +|++++|.++ .+|.  .+..+++|+.|++++|.++
T Consensus        92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A           92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence            5555555554 3343  4455555555555555554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=7.7e-14  Score=110.83  Aligned_cols=104  Identities=16%  Similarity=0.151  Sum_probs=47.2

Q ss_pred             ccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccccccccccccc--ccccCCCc
Q 044980          148 HLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPT--SFIRLCKL  225 (313)
Q Consensus       148 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~--~~~~~~~L  225 (313)
                      +|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++  |++++|  .+. .+|.  .+..+++|
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~--L~L~~N--~i~-~~~~~~~l~~l~~L  115 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE--LILTNN--SLV-ELGDLDPLASLKSL  115 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE--EECCSC--CCC-CGGGGGGGGGCTTC
T ss_pred             CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE--EECCCC--cCC-cchhhHhhhcCCCC
Confidence            444444444444422  33444445555555555544322222344444444  444444  221 1222  34455566


Q ss_pred             CEEEccCCCCCCCcch----hhhhhccccccCccEEEcccccc
Q 044980          226 TSIDFSSVKLSQDISQ----VLDIFSAYGTYALVSLILSHCQI  264 (313)
Q Consensus       226 ~~L~l~~n~l~~~~~~----~l~~~~~~~~~~L~~L~Ls~n~l  264 (313)
                      +.|++++|.+... |.    .+..++     +|+.|+++.|..
T Consensus       116 ~~L~l~~N~i~~~-~~~~~~~~~~l~-----~L~~Ld~~~n~~  152 (176)
T 1a9n_A          116 TYLCILRNPVTNK-KHYRLYVIYKVP-----QVRVLDFQKVKL  152 (176)
T ss_dssp             CEEECCSSGGGGS-TTHHHHHHHHCT-----TCSEETTEECCH
T ss_pred             CEEEecCCCCCCc-HhHHHHHHHHCC-----ccceeCCCcCCH
Confidence            6666666665532 32    244444     555555555544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.49  E-value=7.1e-16  Score=125.12  Aligned_cols=128  Identities=18%  Similarity=0.242  Sum_probs=61.8

Q ss_pred             hhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccccccccccccccccccccc
Q 044980          142 WIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIR  221 (313)
Q Consensus       142 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~  221 (313)
                      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|+.  |++++|  .+.+ +| .+..
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~--L~L~~N--~l~~-l~-~~~~  113 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEE--LWISYN--QIAS-LS-GIEK  113 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSE--EEEEEE--ECCC-HH-HHHH
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCE--EECcCC--cCCc-CC-cccc
Confidence            34444444444444444442 33 3444444555555544444 33444444444555  444444  2222 22 3444


Q ss_pred             CCCcCEEEccCCCCCCCcc-hhhhhhccccccCccEEEccccccccc--------------ccCCCCCCEEEccCCccc
Q 044980          222 LCKLTSIDFSSVKLSQDIS-QVLDIFSAYGTYALVSLILSHCQISAA--------------LGKLSSLRNLDFSLNMLN  285 (313)
Q Consensus       222 ~~~L~~L~l~~n~l~~~~~-~~l~~~~~~~~~~L~~L~Ls~n~l~~~--------------~~~~~~L~~L~l~~n~l~  285 (313)
                      +++|++|++++|.+.+..+ ..+..++     +|+.|++++|.+++.              +..+++|+.||  +|.++
T Consensus       114 l~~L~~L~l~~N~i~~~~~~~~l~~l~-----~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          114 LVNLRVLYMSNNKITNWGEIDKLAALD-----KLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTT-----TCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCCCCEEECCCCcCCchhHHHHHhcCC-----CCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            5555555665555554221 2344444     566666666655432              45566677665  44444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.45  E-value=1.6e-13  Score=120.03  Aligned_cols=57  Identities=16%  Similarity=0.158  Sum_probs=31.4

Q ss_pred             CCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEcc
Q 044980          122 LLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLS  179 (313)
Q Consensus       122 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~  179 (313)
                      +++|+.+++.. .++...+.+|..+++|+.+.+.+|.+....+..|..+.++..+...
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~  156 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLG  156 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTT
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCc
Confidence            66666666666 5554444456666666666666666554444455555444444433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.39  E-value=1.8e-13  Score=119.78  Aligned_cols=220  Identities=11%  Similarity=0.044  Sum_probs=140.1

Q ss_pred             CCcceecCCCCcccccccccccC-CCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhh------
Q 044980           73 GYLKYSDAEDDDHYMRSKLVVGN-LSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYS------  145 (313)
Q Consensus        73 ~~L~~L~l~~n~~~~~~~~~l~~-l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------  145 (313)
                      .+++.|.++++ +...-...+.. +++|++|||++|.+....+.   -..++.+..+.+..+.+..   ..|..      
T Consensus        25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~---~~~~~~~~~~~~~~~~I~~---~aF~~~~~~~~   97 (329)
T 3sb4_A           25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGK---AGTYPNGKFYIYMANFVPA---YAFSNVVNGVT   97 (329)
T ss_dssp             HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEES---SSSSGGGCCEEECTTEECT---TTTEEEETTEE
T ss_pred             CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCc---cccccccccccccccccCH---HHhcccccccc
Confidence            44666666543 11111112333 67788888888886211111   1112224555556664432   24677      


Q ss_pred             --cCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccc---------------
Q 044980          146 --LRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCM---------------  208 (313)
Q Consensus       146 --l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~---------------  208 (313)
                        +.+|+.+.+.. .++..-+..|.++++|+.+++.+|.+....+..|..+.++..  +....+.               
T Consensus        98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~--l~~~~~~~~~~~~~i~~~~f~~  174 (329)
T 3sb4_A           98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIF--IPLGSSDAYRFKNRWEHFAFIE  174 (329)
T ss_dssp             EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEE--ECTTCTHHHHTSTTTTTSCEEE
T ss_pred             cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEE--ecCcchhhhhcccccccccccc
Confidence              99999999999 787566678999999999999999987555566666665655  4333210               


Q ss_pred             -cccc--------ccccc---------------------------cc-ccCCCcCEEEccCCCCCCCcchhhhhhccccc
Q 044980          209 -VRFH--------QLIPT---------------------------SF-IRLCKLTSIDFSSVKLSQDISQVLDIFSAYGT  251 (313)
Q Consensus       209 -~~~~--------~~~~~---------------------------~~-~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~  251 (313)
                       ..+.        +.++.                           .+ ..+++|+.+++++|.+....+..|..+.    
T Consensus       175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~----  250 (329)
T 3sb4_A          175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKK----  250 (329)
T ss_dssp             SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCT----
T ss_pred             ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCC----
Confidence             0000        00000                           00 1267899999998888765556677776    


Q ss_pred             cCccEEEccccccccc----ccCCCCCC-EEEccCCccccccCccccCCCCCCEeeCCCCcCc
Q 044980          252 YALVSLILSHCQISAA----LGKLSSLR-NLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFV  309 (313)
Q Consensus       252 ~~L~~L~Ls~n~l~~~----~~~~~~L~-~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~  309 (313)
                       +|+.+++..| +...    |.++++|+ .+++.+ .++..-+..|.++++|+.+++++|.++
T Consensus       251 -~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~  310 (329)
T 3sb4_A          251 -YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT  310 (329)
T ss_dssp             -TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred             -CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence             8999998887 5433    88888898 899887 666444568888889999998888765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.35  E-value=4.2e-12  Score=100.16  Aligned_cols=109  Identities=23%  Similarity=0.232  Sum_probs=87.0

Q ss_pred             CCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccc
Q 044980          124 LLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLN  203 (313)
Q Consensus       124 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~  203 (313)
                      ..+++++++|.++.. |..+  ..+|++|++++|.+++..|..|..+++|++|++++|++++..+..|..+++|++  |+
T Consensus        10 ~~~~l~~s~n~l~~i-p~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~--L~   84 (170)
T 3g39_A           10 SGTTVDCSGKSLASV-PTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ--LS   84 (170)
T ss_dssp             ETTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE--EE
T ss_pred             CCCEEEeCCCCcCcc-CccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCE--EE
Confidence            357889999988764 3322  367899999999999777888888999999999999998766667788888888  88


Q ss_pred             ccccccccccccccccccCCCcCEEEccCCCCCCCc
Q 044980          204 LVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDI  239 (313)
Q Consensus       204 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  239 (313)
                      +++|  .+.+..+..+..+++|+.|++++|.+....
T Consensus        85 L~~N--~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           85 LNDN--QLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             CCSS--CCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CCCC--ccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            8888  666666667888888888888888887654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.34  E-value=2.6e-14  Score=127.01  Aligned_cols=136  Identities=15%  Similarity=0.142  Sum_probs=71.6

Q ss_pred             CCCCEEEcCCccCCCCCchh-hhhcCccCeeeccCcccCcCCCCCC-----CCCCCCCEEEccCCCCCCC----Cchhhh
Q 044980          123 LLLEHIDLGQVHLGKASDCW-IYSLRHLFFIVLSYNQFQGKIPSTL-----GNLTSLKQIDLSHNQFNFT----SPGWLS  192 (313)
Q Consensus       123 ~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~p~~~~  192 (313)
                      ++|++|++++|.++...... ...+.+|++|+|++|.++......+     ...++|++|++++|.++..    ++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            45555555555554322221 2233445555555555542211111     1245566666666655421    223334


Q ss_pred             cCccccccccccccccccccc----ccccccccCCCcCEEEccCCCCCCCcchhh----hhhccccccCccEEEcccccc
Q 044980          193 KLNELSSFLLNLVSCMVRFHQ----LIPTSFIRLCKLTSIDFSSVKLSQDISQVL----DIFSAYGTYALVSLILSHCQI  264 (313)
Q Consensus       193 ~l~~L~~~~L~l~~n~~~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l----~~~~~~~~~~L~~L~Ls~n~l  264 (313)
                      ..++|++  |++++|  .+..    .++..+...++|++|++++|.+.+.....+    ...+     +|+.|+|++|.+
T Consensus       181 ~~~~L~~--L~Ls~N--~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~-----~L~~L~Ls~N~i  251 (372)
T 3un9_A          181 GNTSVTH--LSLLHT--GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHP-----SLELLHLYFNEL  251 (372)
T ss_dssp             TCSSCCE--EECTTS--SCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCS-----SCCEEECTTSSC
T ss_pred             cCCCcCE--EeCCCC--CCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCC-----CCCEEeccCCCC
Confidence            4555666  666665  2221    134455666778888888888775433333    3334     788888888887


Q ss_pred             ccc
Q 044980          265 SAA  267 (313)
Q Consensus       265 ~~~  267 (313)
                      ++.
T Consensus       252 ~~~  254 (372)
T 3un9_A          252 SSE  254 (372)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            755

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.34  E-value=3.2e-14  Score=126.44  Aligned_cols=179  Identities=15%  Similarity=0.099  Sum_probs=120.2

Q ss_pred             CCCCCEEEcCCccCCCCCchhhhhc-----CccCeeeccCcccCcCCCCCC-CCCCCCCEEEccCCCCCCCCchhhh---
Q 044980          122 LLLLEHIDLGQVHLGKASDCWIYSL-----RHLFFIVLSYNQFQGKIPSTL-GNLTSLKQIDLSHNQFNFTSPGWLS---  192 (313)
Q Consensus       122 l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~p~~~~---  192 (313)
                      ++.|+.|++++|.++......+...     .+|++|+|++|.++......+ ..+++|++|++++|.++......+.   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            3578889999988876544444444     579999999999874322222 2456899999999998754444432   


Q ss_pred             --cCccccccccccccccccccc----ccccccccCCCcCEEEccCCCCCCCcch----hhhhhccccccCccEEEcccc
Q 044980          193 --KLNELSSFLLNLVSCMVRFHQ----LIPTSFIRLCKLTSIDFSSVKLSQDISQ----VLDIFSAYGTYALVSLILSHC  262 (313)
Q Consensus       193 --~l~~L~~~~L~l~~n~~~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~l~~~~~~~~~~L~~L~Ls~n  262 (313)
                        ..+.|+.  |++++|  .+..    .++..+...++|++|++++|.+.+....    .+...+     +|+.|+|++|
T Consensus       151 ~~~~~~L~~--L~Ls~n--~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~-----~L~~L~Ls~N  221 (372)
T 3un9_A          151 LHDQCQITT--LRLSNN--PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR-----QLQELNVAYN  221 (372)
T ss_dssp             HSTTCCCCE--EECCSS--CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS-----CCCEEECCSS
T ss_pred             HhcCCccce--eeCCCC--CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC-----CcCeEECCCC
Confidence              3577888  888888  4332    2555567788899999999998764433    333333     8999999999


Q ss_pred             ccccc--------ccCCCCCCEEEccCCccccccCccccCC---C--CCCEee--CCCCcCc
Q 044980          263 QISAA--------LGKLSSLRNLDFSLNMLNGSIPLSLGQI---S--HLEYLD--LSNNKFV  309 (313)
Q Consensus       263 ~l~~~--------~~~~~~L~~L~l~~n~l~~~ip~~l~~l---~--~L~~L~--l~~n~l~  309 (313)
                      .+++.        +...++|++|+|++|.|++.....+...   .  .++.+.  +..|.++
T Consensus       222 ~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          222 GAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             CCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             CCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            98764        4456889999999999886444444322   2  266666  6666654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.32  E-value=8.5e-12  Score=98.40  Aligned_cols=102  Identities=21%  Similarity=0.153  Sum_probs=84.1

Q ss_pred             CCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEE
Q 044980           98 NLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQI  176 (313)
Q Consensus        98 ~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  176 (313)
                      ..+++++++|.+.    .+| .+  .+.|++|++++|.+++..|..+..+++|++|++++|++++..+..|..+++|++|
T Consensus        10 ~~~~l~~s~n~l~----~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L   83 (170)
T 3g39_A           10 SGTTVDCSGKSLA----SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL   83 (170)
T ss_dssp             ETTEEECTTSCCS----SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCEEEeCCCCcC----ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence            3578899988862    233 22  3788999999999998888888899999999999999986666667889999999


Q ss_pred             EccCCCCCCCCchhhhcCccccccccccccc
Q 044980          177 DLSHNQFNFTSPGWLSKLNELSSFLLNLVSC  207 (313)
Q Consensus       177 ~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n  207 (313)
                      ++++|.+++..+..+..+++|+.  |++++|
T Consensus        84 ~L~~N~l~~~~~~~~~~l~~L~~--L~L~~N  112 (170)
T 3g39_A           84 SLNDNQLKSIPRGAFDNLKSLTH--IWLLNN  112 (170)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCE--EECCSS
T ss_pred             ECCCCccCEeCHHHhcCCCCCCE--EEeCCC
Confidence            99999998776667888999999  888888

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.31  E-value=9.8e-12  Score=98.45  Aligned_cols=108  Identities=19%  Similarity=0.238  Sum_probs=86.1

Q ss_pred             CCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccc
Q 044980          125 LEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNL  204 (313)
Q Consensus       125 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l  204 (313)
                      -+.+++++|.++.. |..+  .++|++|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|+.  |++
T Consensus        14 ~~~l~~~~n~l~~i-P~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~--L~L   88 (174)
T 2r9u_A           14 QTLVNCQNIRLASV-PAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ--LDL   88 (174)
T ss_dssp             SSEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE--EEC
T ss_pred             CcEEEeCCCCCCcc-CCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhE--EEC
Confidence            37889999988654 4322  367999999999999777888889999999999999998766666788888888  888


Q ss_pred             cccccccccccccccccCCCcCEEEccCCCCCCCc
Q 044980          205 VSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDI  239 (313)
Q Consensus       205 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  239 (313)
                      ++|  .+..+.+..+..+++|++|++++|.+....
T Consensus        89 ~~N--~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           89 NDN--HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CSS--CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             CCC--ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            888  666655556888888888888888887653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.29  E-value=1.8e-11  Score=96.96  Aligned_cols=101  Identities=18%  Similarity=0.183  Sum_probs=82.3

Q ss_pred             CcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEE
Q 044980           99 LQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQID  177 (313)
Q Consensus        99 L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  177 (313)
                      -+.+++++|.+    ..+| .+  .+.|++|++++|.+.+..|..+..+++|++|+|++|++++..+..|..+++|++|+
T Consensus        14 ~~~l~~~~n~l----~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~   87 (174)
T 2r9u_A           14 QTLVNCQNIRL----ASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD   87 (174)
T ss_dssp             SSEEECCSSCC----SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CcEEEeCCCCC----CccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEE
Confidence            36788988886    3333 23  27899999999999988888888999999999999999865555678899999999


Q ss_pred             ccCCCCCCCCchhhhcCccccccccccccc
Q 044980          178 LSHNQFNFTSPGWLSKLNELSSFLLNLVSC  207 (313)
Q Consensus       178 l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n  207 (313)
                      +++|.+.+..+..+..+++|+.  +++++|
T Consensus        88 L~~N~l~~l~~~~~~~l~~L~~--L~L~~N  115 (174)
T 2r9u_A           88 LNDNHLKSIPRGAFDNLKSLTH--IYLYNN  115 (174)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCSE--EECCSS
T ss_pred             CCCCccceeCHHHhccccCCCE--EEeCCC
Confidence            9999998666666888999999  888888

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.25  E-value=1.2e-10  Score=104.38  Aligned_cols=213  Identities=10%  Similarity=0.078  Sum_probs=110.5

Q ss_pred             CcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeee
Q 044980           74 YLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIV  153 (313)
Q Consensus        74 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  153 (313)
                      +|+.+.+..+ +...-..+|.+ ..|+.+.+.. .+  ..-.-.+|.+|++|+.+++..|.++......+. ..+|+.+.
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l--~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~  209 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TL--EQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVL  209 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TC--CEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEE
T ss_pred             CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-Cc--cEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEE
Confidence            4555555433 33333334544 3466666654 21  111112466677777777776666554444444 35666666


Q ss_pred             ccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCC
Q 044980          154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSV  233 (313)
Q Consensus       154 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n  233 (313)
                      +..+ ++..-...|.++++|+.+++..+ ++......|.+ .+|+.  +.+..+   +..+-...|.++.+|+.+.+.+|
T Consensus       210 lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~--i~lp~~---i~~I~~~aF~~c~~L~~l~l~~~  281 (401)
T 4fdw_A          210 LPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITT--VKLPNG---VTNIASRAFYYCPELAEVTTYGS  281 (401)
T ss_dssp             CCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSE--EEEETT---CCEECTTTTTTCTTCCEEEEESS
T ss_pred             eCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccE--EEeCCC---ccEEChhHhhCCCCCCEEEeCCc
Confidence            6643 44344455666667777776653 33222334444 45666  555332   33334556666677777777666


Q ss_pred             CCCC-----CcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCC
Q 044980          234 KLSQ-----DISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLS  304 (313)
Q Consensus       234 ~l~~-----~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~  304 (313)
                      .+..     ..+..+..+.     +|+.+.+.. .++..    |.++++|+.+++..| ++..-...|.++ +|+.+++.
T Consensus       282 ~~~~~~~~~I~~~aF~~c~-----~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~  353 (401)
T 4fdw_A          282 TFNDDPEAMIHPYCLEGCP-----KLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVE  353 (401)
T ss_dssp             CCCCCTTCEECTTTTTTCT-----TCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEEC
T ss_pred             cccCCcccEECHHHhhCCc-----cCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEc
Confidence            5541     1122333333     666666653 23322    666666666666443 442334455555 66666666


Q ss_pred             CCcC
Q 044980          305 NNKF  308 (313)
Q Consensus       305 ~n~l  308 (313)
                      +|.+
T Consensus       354 ~n~~  357 (401)
T 4fdw_A          354 GTTP  357 (401)
T ss_dssp             CSSC
T ss_pred             CCCC
Confidence            6654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.21  E-value=2.2e-10  Score=102.65  Aligned_cols=218  Identities=10%  Similarity=0.009  Sum_probs=156.1

Q ss_pred             CCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCee
Q 044980           73 GYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI  152 (313)
Q Consensus        73 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  152 (313)
                      ..|+.+.+.. .+...-+.+|.+|++|+.+++..|.+.....  .+|. +..|+.+.+..+ +......+|..+.+|+.+
T Consensus       157 ~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~--~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l  231 (401)
T 4fdw_A          157 STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPA--STFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTI  231 (401)
T ss_dssp             CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECT--TTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCE
T ss_pred             CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEech--hhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEE
Confidence            4577777765 5555555678999999999999888622111  1344 589999999855 655555678899999999


Q ss_pred             eccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccc---cccccccccccCCCcCEEE
Q 044980          153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVR---FHQLIPTSFIRLCKLTSID  229 (313)
Q Consensus       153 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~---~~~~~~~~~~~~~~L~~L~  229 (313)
                      .+..+ ++..-...|.+ .+|+.+.+. +.+.......|.++.+|+.  +.+.++...   ...+-+..|.++.+|+.++
T Consensus       232 ~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~--l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~  306 (401)
T 4fdw_A          232 EIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAE--VTTYGSTFNDDPEAMIHPYCLEGCPKLARFE  306 (401)
T ss_dssp             ECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCE--EEEESSCCCCCTTCEECTTTTTTCTTCCEEC
T ss_pred             ecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCE--EEeCCccccCCcccEECHHHhhCCccCCeEE
Confidence            99875 44344455666 789999994 4455455678899999999  888776221   1134566788999999999


Q ss_pred             ccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCC-CCCEeeCC
Q 044980          230 FSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQIS-HLEYLDLS  304 (313)
Q Consensus       230 l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~-~L~~L~l~  304 (313)
                      +.. .+.......+..+.     +|+.+.+..+ ++..    |.++ +|+.+++.+|.+....+..|.+++ +++.+.+.
T Consensus       307 l~~-~i~~I~~~aF~~c~-----~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp  378 (401)
T 4fdw_A          307 IPE-SIRILGQGLLGGNR-----KVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVP  378 (401)
T ss_dssp             CCT-TCCEECTTTTTTCC-----SCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEEC
T ss_pred             eCC-ceEEEhhhhhcCCC-----CccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeC
Confidence            984 46544445566666     8999999654 4432    8888 999999999988755555677774 68888887


Q ss_pred             CCcC
Q 044980          305 NNKF  308 (313)
Q Consensus       305 ~n~l  308 (313)
                      .+.+
T Consensus       379 ~~~~  382 (401)
T 4fdw_A          379 AESV  382 (401)
T ss_dssp             GGGH
T ss_pred             HHHH
Confidence            6643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.18  E-value=1.2e-10  Score=102.49  Aligned_cols=96  Identities=18%  Similarity=0.040  Sum_probs=74.5

Q ss_pred             cccccccccccCCCCCcEeeccC-CCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCc
Q 044980           84 DHYMRSKLVVGNLSNLQYLDLSW-IDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQG  161 (313)
Q Consensus        84 ~~~~~~~~~l~~l~~L~~L~L~~-n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~  161 (313)
                      .++. +|. +..+++|++|+|++ |.+   .+..+ .|.++++|++|+|++|.+++..|..+..+++|++|+|++|.+++
T Consensus        20 ~l~~-ip~-l~~~~~L~~L~l~~~n~l---~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~   94 (347)
T 2ifg_A           20 ALDS-LHH-LPGAENLTELYIENQQHL---QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES   94 (347)
T ss_dssp             CCTT-TTT-SCSCSCCSEEECCSCSSC---CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC
T ss_pred             CCCc-cCC-CCCCCCeeEEEccCCCCC---CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccce
Confidence            4543 677 88888899999986 875   22222 58888999999999999988888888899999999999999985


Q ss_pred             CCCCCCCCCCCCCEEEccCCCCCC
Q 044980          162 KIPSTLGNLTSLKQIDLSHNQFNF  185 (313)
Q Consensus       162 ~~~~~~~~l~~L~~L~l~~n~l~~  185 (313)
                      ..+..+..++ |+.|++.+|.+..
T Consensus        95 ~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           95 LSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             CCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             eCHHHcccCC-ceEEEeeCCCccC
Confidence            4444455444 9999999998864

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.05  E-value=4.1e-10  Score=98.95  Aligned_cols=106  Identities=17%  Similarity=0.158  Sum_probs=89.0

Q ss_pred             CEEEcCCc-cCCCCCchhhhhcCccCeeeccC-cccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccc
Q 044980          126 EHIDLGQV-HLGKASDCWIYSLRHLFFIVLSY-NQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLN  203 (313)
Q Consensus       126 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~  203 (313)
                      ..++++++ .++. +|. +..+.+|++|+|++ |.+++..+..|.++++|++|+|++|.+++..|..|.++++|+.  |+
T Consensus        11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~--L~   86 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR--LN   86 (347)
T ss_dssp             SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE--EE
T ss_pred             CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCE--Ee
Confidence            45688887 7876 466 88888999999996 9999777788999999999999999999888888999999999  99


Q ss_pred             ccccccccccccccccccCCCcCEEEccCCCCCCC
Q 044980          204 LVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQD  238 (313)
Q Consensus       204 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  238 (313)
                      +++|  .+.++.+..+..+. |+.|++.+|.+...
T Consensus        87 l~~N--~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           87 LSFN--ALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             CCSS--CCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             CCCC--ccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            9999  66665555566555 99999999998754

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.02  E-value=2.8e-10  Score=100.41  Aligned_cols=157  Identities=13%  Similarity=0.095  Sum_probs=83.3

Q ss_pred             hhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhh--cCcccccccccccc--cccc----cc
Q 044980          141 CWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLS--KLNELSSFLLNLVS--CMVR----FH  212 (313)
Q Consensus       141 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~l~~L~~~~L~l~~--n~~~----~~  212 (313)
                      ..+..+++|+.|.+++|.-. .++. + .+++|+.|++..+.+.......+.  .+++|+.  |.++.  +...    +.
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~--L~L~~~~~~~~~~~~~~  240 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEK--LVLYVGVEDYGFDGDMN  240 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCE--EEEECBCGGGTCCSCGG
T ss_pred             HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcE--EEEeccccccccchhHH
Confidence            34455566666666655211 2232 2 256677777766665433222333  4566666  44321  1000    00


Q ss_pred             ccccccc--ccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc--------ccCCCCCCEEEccCC
Q 044980          213 QLIPTSF--IRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--------LGKLSSLRNLDFSLN  282 (313)
Q Consensus       213 ~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--------~~~~~~L~~L~l~~n  282 (313)
                      . +...+  ..+++|++|++.+|.+.+..+..+...+  .+++|+.|+|+.|.+.+.        +..+++|+.|++++|
T Consensus       241 ~-l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~--~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          241 V-FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESD--ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             G-TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCS--SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             H-HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCc--cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence            0 11111  2456788888888777654444444322  234788888888877663        234677888888888


Q ss_pred             ccccccCccccC-CCCCCEeeCCCCc
Q 044980          283 MLNGSIPLSLGQ-ISHLEYLDLSNNK  307 (313)
Q Consensus       283 ~l~~~ip~~l~~-l~~L~~L~l~~n~  307 (313)
                      .+++..-..+.. +  ...++++.++
T Consensus       318 ~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          318 YLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             BCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             cCCHHHHHHHHHHc--CCEEEecCCc
Confidence            777543333332 2  3456666654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.86  E-value=2.1e-09  Score=94.88  Aligned_cols=153  Identities=16%  Similarity=0.198  Sum_probs=81.2

Q ss_pred             hccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCC--CCCCCCCEEEccC--CCCCCC-----Cch
Q 044980          119 LSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTL--GNLTSLKQIDLSH--NQFNFT-----SPG  189 (313)
Q Consensus       119 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~--~~l~~L~~L~l~~--n~l~~~-----~p~  189 (313)
                      +..+++|+.|+++++.-. ..+. + .+++|++|.+..+.++......+  ..+++|+.|+|+.  +...+.     +..
T Consensus       168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~  244 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP  244 (362)
T ss_dssp             HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred             HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence            445566666666655211 1111 2 25566666666655442211122  2456666666542  111111     011


Q ss_pred             hh--hcCccccccccccccccccccccccccc---ccCCCcCEEEccCCCCCCCcchhh----hhhccccccCccEEEcc
Q 044980          190 WL--SKLNELSSFLLNLVSCMVRFHQLIPTSF---IRLCKLTSIDFSSVKLSQDISQVL----DIFSAYGTYALVSLILS  260 (313)
Q Consensus       190 ~~--~~l~~L~~~~L~l~~n~~~~~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~l----~~~~~~~~~~L~~L~Ls  260 (313)
                      .+  ..+++|+.  |.+.+|  .+....+..+   ..+++|++|+++.|.+.+..+..+    ..++     +|+.|+++
T Consensus       245 ~l~~~~~p~Lr~--L~L~~~--~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~-----~L~~L~L~  315 (362)
T 2ra8_A          245 LFSKDRFPNLKW--LGIVDA--EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIK-----HLKFINMK  315 (362)
T ss_dssp             GSCTTTCTTCCE--EEEESC--TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHT-----TCSEEECC
T ss_pred             HHhcCCCCCcCE--EeCCCC--CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCC-----cceEEECC
Confidence            11  13566666  666555  2221111112   246789999999999887543333    3445     89999999


Q ss_pred             ccccccc-ccCCCC--CCEEEccCCc
Q 044980          261 HCQISAA-LGKLSS--LRNLDFSLNM  283 (313)
Q Consensus       261 ~n~l~~~-~~~~~~--L~~L~l~~n~  283 (313)
                      +|.+++. ...+..  ...+++++++
T Consensus       316 ~n~i~d~~~~~l~~alg~~~~~~~~~  341 (362)
T 2ra8_A          316 YNYLSDEMKKELQKSLPMKIDVSDSQ  341 (362)
T ss_dssp             SBBCCHHHHHHHHHHCCSEEECCSBC
T ss_pred             CCcCCHHHHHHHHHHcCCEEEecCCc
Confidence            9998876 222221  4678998887

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.64  E-value=3.7e-09  Score=88.87  Aligned_cols=151  Identities=14%  Similarity=0.065  Sum_probs=90.5

Q ss_pred             CCcccCceEecCCCCCEEEEecCC--------CCC-----Ccc-eecCCCCccccccccc-ccCCCCCcE--eeccCCCC
Q 044980           47 DCCKWVGNFCNNLTGHILELNLEN--------PFG-----YLK-YSDAEDDDHYMRSKLV-VGNLSNLQY--LDLSWIDC  109 (313)
Q Consensus        47 ~~c~~~~v~c~~~~~~v~~l~l~~--------~l~-----~L~-~L~l~~n~~~~~~~~~-l~~l~~L~~--L~L~~n~~  109 (313)
                      ..|.|.|+.|.....+|..+...+        .++     .|+ .+...+|.....+... +...+.|+.  ++++.|..
T Consensus        76 ~l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~  155 (267)
T 3rw6_A           76 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRR  155 (267)
T ss_dssp             HHHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHHHHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSH
T ss_pred             HHHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHHHHHhccchhccccCHHHcCCCcchhhcCccccCCHH
Confidence            357899999976444554333221        111     111 1222233333322221 334444554  55555542


Q ss_pred             CCCCCCchh-hccCCCCCEEEcCCccCCC--CCchhhhhcCccCeeeccCcccCcCCCCCCCCCC--CCCEEEccCCCCC
Q 044980          110 RLHVDSLSW-LSSLLLLEHIDLGQVHLGK--ASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLT--SLKQIDLSHNQFN  184 (313)
Q Consensus       110 ~~~~~~~~~-~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~--~L~~L~l~~n~l~  184 (313)
                      ......++. ..++++|++|++++|.+++  .++..+..+++|++|+|++|.+.+.  ..+..+.  +|++|++.+|.+.
T Consensus       156 ~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~  233 (267)
T 3rw6_A          156 SCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC  233 (267)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTG
T ss_pred             HHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCc
Confidence            111111221 2468899999999999988  4456677899999999999999854  2233333  8999999999998


Q ss_pred             CCCc-------hhhhcCccccc
Q 044980          185 FTSP-------GWLSKLNELSS  199 (313)
Q Consensus       185 ~~~p-------~~~~~l~~L~~  199 (313)
                      +.+|       ..+..+++|+.
T Consensus       234 ~~~~~~~~y~~~il~~~P~L~~  255 (267)
T 3rw6_A          234 DTFRDQSTYISAIRERFPKLLR  255 (267)
T ss_dssp             GGCSSHHHHHHHHHHHCTTCCE
T ss_pred             cccCcchhHHHHHHHHCcccCe
Confidence            7665       24667788887

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.59  E-value=2.4e-08  Score=79.63  Aligned_cols=120  Identities=14%  Similarity=0.081  Sum_probs=72.7

Q ss_pred             CCCCCCCCCCEEEccCC-CCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhh
Q 044980          165 STLGNLTSLKQIDLSHN-QFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVL  243 (313)
Q Consensus       165 ~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  243 (313)
                      ..+...+.|++|++++| .+.......                        +...+...++|++|++++|.+.+.....+
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~------------------------l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l   85 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKA------------------------CAEALKTNTYVKKFSIVGTRSNDPVAFAL   85 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHH------------------------HHHHHTTCCSCCEEECTTSCCCHHHHHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHH------------------------HHHHHHhCCCcCEEECcCCCCChHHHHHH
Confidence            34556788888998888 765321111                        22223344567777777777765433333


Q ss_pred             hhhccccccCccEEEccccccccc--------ccCCCCCCEEEc--cCCccccc----cCccccCCCCCCEeeCCCCcCc
Q 044980          244 DIFSAYGTYALVSLILSHCQISAA--------LGKLSSLRNLDF--SLNMLNGS----IPLSLGQISHLEYLDLSNNKFV  309 (313)
Q Consensus       244 ~~~~~~~~~~L~~L~Ls~n~l~~~--------~~~~~~L~~L~l--~~n~l~~~----ip~~l~~l~~L~~L~l~~n~l~  309 (313)
                      ...-. ..++|+.|+|++|.+.+.        +...++|++|+|  ++|.+...    +...+...++|++|++++|.+.
T Consensus        86 ~~~L~-~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           86 AEMLK-VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHH-HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHH-hCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            22211 112677777777777654        555667888888  77777753    3344455577888888888764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.49  E-value=2.9e-06  Score=75.67  Aligned_cols=52  Identities=13%  Similarity=0.156  Sum_probs=36.3

Q ss_pred             CccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCC
Q 044980          253 ALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNN  306 (313)
Q Consensus       253 ~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n  306 (313)
                      +|+.+.+..+ ++..    |.++.+|+.+++..+ ++..-...|.++.+|+.+++..+
T Consensus       298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             cccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence            6777777543 3221    778889999998754 55333457788889999988765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.42  E-value=2.7e-07  Score=77.49  Aligned_cols=79  Identities=24%  Similarity=0.239  Sum_probs=65.1

Q ss_pred             ccCCCcCEEEccCCCCCC--CcchhhhhhccccccCccEEEccccccccc--ccCCC--CCCEEEccCCccccccCc---
Q 044980          220 IRLCKLTSIDFSSVKLSQ--DISQVLDIFSAYGTYALVSLILSHCQISAA--LGKLS--SLRNLDFSLNMLNGSIPL---  290 (313)
Q Consensus       220 ~~~~~L~~L~l~~n~l~~--~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~--~L~~L~l~~n~l~~~ip~---  290 (313)
                      .++++|+.|+|++|.+.+  .++..+..++     +|+.|+|++|++.+.  +..+.  +|++|+|++|.+.+.+|.   
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~-----~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~  241 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAP-----NLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQST  241 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHST-----TCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCC-----CCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchh
Confidence            567889999999999998  5566777788     999999999999886  44444  899999999999987763   


Q ss_pred             ----cccCCCCCCEeeC
Q 044980          291 ----SLGQISHLEYLDL  303 (313)
Q Consensus       291 ----~l~~l~~L~~L~l  303 (313)
                          .+..+|+|+.||-
T Consensus       242 y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          242 YISAIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHHHHCTTCCEESS
T ss_pred             HHHHHHHHCcccCeECC
Confidence                4667899998874

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.42  E-value=1.1e-07  Score=75.67  Aligned_cols=119  Identities=13%  Similarity=0.022  Sum_probs=76.3

Q ss_pred             hhhhcCccCeeeccCc-ccCcC----CCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccc
Q 044980          142 WIYSLRHLFFIVLSYN-QFQGK----IPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIP  216 (313)
Q Consensus       142 ~~~~l~~L~~L~L~~n-~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~  216 (313)
                      .+...+.|++|+|++| .+...    +...+...++|++|++++|.+.......                        +.
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~------------------------l~   86 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFA------------------------LA   86 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHH------------------------HH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHH------------------------HH
Confidence            4566778999999999 88632    3445566789999999999986432111                        12


Q ss_pred             cccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEc--cccccccc--------ccCCCCCCEEEccCCccc
Q 044980          217 TSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLIL--SHCQISAA--------LGKLSSLRNLDFSLNMLN  285 (313)
Q Consensus       217 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L--s~n~l~~~--------~~~~~~L~~L~l~~n~l~  285 (313)
                      ..+...++|++|++++|.+.+.....+...-. ..++|+.|+|  ++|.+...        +...++|++|++++|.+.
T Consensus        87 ~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~-~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           87 EMLKVNNTLKSLNVESNFISGSGILALVEALQ-SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHCSSCCEEECCSSCCCHHHHHHHHHGGG-GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCcCEEECcCCcCCHHHHHHHHHHHH-hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            22333456777777777776543333322211 1226777777  67777654        445577888888888775

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.28  E-value=1.4e-05  Score=71.24  Aligned_cols=53  Identities=11%  Similarity=0.201  Sum_probs=33.0

Q ss_pred             CccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCc
Q 044980          253 ALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNK  307 (313)
Q Consensus       253 ~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~  307 (313)
                      +|+.+.+..+ ++..    |.++.+|+.+.+..+ ++..-...|.++++|+.+++.++.
T Consensus       312 ~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          312 SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            6777777543 2221    777777777777544 542333466777777777777653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.24  E-value=9.6e-06  Score=72.29  Aligned_cols=211  Identities=15%  Similarity=0.125  Sum_probs=97.1

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF  150 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  150 (313)
                      ++++|+.+.+..+- ...-..+|.++..|+.+.+..+--   ...-.++.++..|+.+.+..+...  +........+|+
T Consensus       160 ~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~~~---~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~  233 (394)
T 4fs7_A          160 TCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRNLK---IIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVK  233 (394)
T ss_dssp             TCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTTCC---EECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCC
T ss_pred             ccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCCce---EeCchhhccccccceeecCCCceE--eehhhcccCCCc
Confidence            56778888886543 223344677888888888876521   111124666777777666554321  111122334566


Q ss_pred             eeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEc
Q 044980          151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDF  230 (313)
Q Consensus       151 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l  230 (313)
                      .+.+.... +..-...+..+..++.+.+..+... .....+..+..++.  +.....  .   .....+..+.+|+.+.+
T Consensus       234 ~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~--~~~~~~--~---i~~~~F~~~~~L~~i~l  304 (394)
T 4fs7_A          234 NIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKK--VIYGSV--I---VPEKTFYGCSSLTEVKL  304 (394)
T ss_dssp             EEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCE--EEECSS--E---ECTTTTTTCTTCCEEEE
T ss_pred             eEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccce--eccCce--e---ecccccccccccccccc
Confidence            66554332 2122344555666666666554321 22223444444444  322221  0   11123344445555554


Q ss_pred             cCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCC
Q 044980          231 SSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLS  304 (313)
Q Consensus       231 ~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~  304 (313)
                      ..+ +.......+..+.     +|+.+++..+ ++..    |.++.+|+.+++..+ +...-...|.++++|+.+++.
T Consensus       305 ~~~-i~~I~~~aF~~c~-----~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          305 LDS-VKFIGEEAFESCT-----SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             CTT-CCEECTTTTTTCT-----TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred             ccc-cceechhhhcCCC-----CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence            332 2211122233333     4555555322 2211    455555555555444 332223344555555555543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.23  E-value=4.9e-07  Score=70.73  Aligned_cols=78  Identities=19%  Similarity=0.251  Sum_probs=36.5

Q ss_pred             CcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccc-cccc----ccCC----CCCCEEEccCCc-cccccCcccc
Q 044980          224 KLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQ-ISAA----LGKL----SSLRNLDFSLNM-LNGSIPLSLG  293 (313)
Q Consensus       224 ~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~-l~~~----~~~~----~~L~~L~l~~n~-l~~~ip~~l~  293 (313)
                      +|+.|+++++.+++.....+..++     +|+.|+|++|. +++.    +..+    ++|++|+|++|. +++.--..+.
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~-----~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~  136 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQ-----YVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH  136 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCS-----CCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCC-----CCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence            455555555554443333333333     55555555553 4433    3222    245555555553 4443333344


Q ss_pred             CCCCCCEeeCCCC
Q 044980          294 QISHLEYLDLSNN  306 (313)
Q Consensus       294 ~l~~L~~L~l~~n  306 (313)
                      .+++|++|++++|
T Consensus       137 ~~~~L~~L~L~~c  149 (176)
T 3e4g_A          137 HFRNLKYLFLSDL  149 (176)
T ss_dssp             GCTTCCEEEEESC
T ss_pred             cCCCCCEEECCCC
Confidence            4555555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.99  E-value=1.8e-06  Score=67.45  Aligned_cols=84  Identities=17%  Similarity=0.115  Sum_probs=55.8

Q ss_pred             CCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCcc-CCCCCchhhhhc----CccCeeeccCcc-cCcCCCCCCCCC
Q 044980           97 SNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVH-LGKASDCWIYSL----RHLFFIVLSYNQ-FQGKIPSTLGNL  170 (313)
Q Consensus        97 ~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-~~~~~~~~~~~l  170 (313)
                      ..|++||++++.+  ....+..+.++++|++|++++|. +++..-..+..+    ++|++|++++|. ++..--..+..+
T Consensus        61 ~~L~~LDLs~~~I--td~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~  138 (176)
T 3e4g_A           61 YKIQAIDATDSCI--MSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF  138 (176)
T ss_dssp             CCEEEEEEESCCC--CGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred             ceEeEEeCcCCCc--cHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence            4577777777764  44445556777888888887774 555444445543    358888888875 553322345667


Q ss_pred             CCCCEEEccCCC
Q 044980          171 TSLKQIDLSHNQ  182 (313)
Q Consensus       171 ~~L~~L~l~~n~  182 (313)
                      ++|++|++++|.
T Consensus       139 ~~L~~L~L~~c~  150 (176)
T 3e4g_A          139 RNLKYLFLSDLP  150 (176)
T ss_dssp             TTCCEEEEESCT
T ss_pred             CCCCEEECCCCC
Confidence            888999988886

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.99  E-value=0.00014  Score=64.74  Aligned_cols=128  Identities=14%  Similarity=0.207  Sum_probs=73.0

Q ss_pred             CCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhh
Q 044980          166 TLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDI  245 (313)
Q Consensus       166 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  245 (313)
                      .|.++.+|+.+.+..+... .....|.++..|+.  +.+...   +..+-...|.++.+|+.+.+..+ ++......+..
T Consensus       260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~--i~l~~~---i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~  332 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQD--IEFSSR---ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG  332 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCE--EECCTT---CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred             eeeecccccEEecccccce-ecCccccccccccc--ccCCCc---ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence            3445555666655443321 22234556666666  555442   33344556788889999998654 33222334555


Q ss_pred             hccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCc
Q 044980          246 FSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFV  309 (313)
Q Consensus       246 ~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~  309 (313)
                      +.     +|+.+.+..+ ++..    |.++++|+.+++.++....   ..+.....|+.+.+..+.+.
T Consensus       333 C~-----~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~~  391 (394)
T 4gt6_A          333 CE-----QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSID  391 (394)
T ss_dssp             CT-----TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----------
T ss_pred             CC-----CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCEE
Confidence            55     8999999654 4322    8999999999999886542   35667788999988876553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.65  E-value=0.0014  Score=57.62  Aligned_cols=103  Identities=9%  Similarity=0.111  Sum_probs=53.3

Q ss_pred             hhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc---
Q 044980          191 LSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA---  267 (313)
Q Consensus       191 ~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~---  267 (313)
                      +.++..|+.  +.+..+   +..+-...+.++.+|+.+.+..+ +.......+..+.     +|+.+.+.++.++..   
T Consensus       236 f~~~~~L~~--i~lp~~---v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~-----~L~~i~l~~~~i~~I~~~  304 (379)
T 4h09_A          236 FYGMKALDE--IAIPKN---VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS-----NLTKVVMDNSAIETLEPR  304 (379)
T ss_dssp             TTTCSSCCE--EEECTT---CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT-----TCCEEEECCTTCCEECTT
T ss_pred             ccCCccceE--EEcCCC---ccEeCccccceeehhcccccccc-ceecccccccccc-----ccccccccccccceehhh
Confidence            444445555  444332   22223334555556666665432 2211122233333     777777776655432   


Q ss_pred             -ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCC
Q 044980          268 -LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSN  305 (313)
Q Consensus       268 -~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~  305 (313)
                       |.++.+|+.++|..+ ++..-...|.++.+|+.+.+..
T Consensus       305 aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          305 VFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             hhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence             777777777777644 4422234566677777776643

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.55  E-value=4.6e-05  Score=60.65  Aligned_cols=115  Identities=10%  Similarity=0.064  Sum_probs=77.3

Q ss_pred             hhcCccccccccccccc-ccccc--cccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc
Q 044980          191 LSKLNELSSFLLNLVSC-MVRFH--QLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA  267 (313)
Q Consensus       191 ~~~l~~L~~~~L~l~~n-~~~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~  267 (313)
                      +.+-+.|+.  |++++| ...-.  ..+-+.+...+.|+.|+|++|.+.+.....+...-. ....|+.|+|+.|.|.+.
T Consensus        37 l~~n~~L~~--L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~-~N~tL~~L~L~~N~Ig~~  113 (197)
T 1pgv_A           37 REDDTDLKE--VNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIE-TSPSLRVLNVESNFLTPE  113 (197)
T ss_dssp             HTTCSSCCE--EECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHH-HCSSCCEEECCSSBCCHH
T ss_pred             HhcCCCccE--EECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHh-cCCccCeEecCCCcCCHH
Confidence            344577888  777763 22211  125556677788999999999997654444433221 112899999999999866


Q ss_pred             --------ccCCCCCCEEEccCC---cccc----ccCccccCCCCCCEeeCCCCcC
Q 044980          268 --------LGKLSSLRNLDFSLN---MLNG----SIPLSLGQISHLEYLDLSNNKF  308 (313)
Q Consensus       268 --------~~~~~~L~~L~l~~n---~l~~----~ip~~l~~l~~L~~L~l~~n~l  308 (313)
                              +...+.|++|+|++|   .+..    .+...+..-+.|+.|+++.|.+
T Consensus       114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence                    666678999999865   3443    3445566678899999987764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.47  E-value=5.6e-05  Score=60.14  Aligned_cols=117  Identities=11%  Similarity=0.074  Sum_probs=78.4

Q ss_pred             CCCCCCCCCEEEccCC-CCCCC----CchhhhcCcccccccccccccccccc--cccccccccCCCcCEEEccCCCCCCC
Q 044980          166 TLGNLTSLKQIDLSHN-QFNFT----SPGWLSKLNELSSFLLNLVSCMVRFH--QLIPTSFIRLCKLTSIDFSSVKLSQD  238 (313)
Q Consensus       166 ~~~~l~~L~~L~l~~n-~l~~~----~p~~~~~l~~L~~~~L~l~~n~~~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~  238 (313)
                      .+.+-+.|++|+|++| .+...    +...+..-+.|+.  |++++|...-.  ..+.+.+...+.|+.|+|++|.+.+.
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~--L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~  113 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEK--FSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE  113 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCE--EECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCE--EEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence            3345678999999986 66532    2344556678888  88888822211  12555666778899999999999876


Q ss_pred             cchhhhhhccccccCccEEEcccc---ccccc--------ccCCCCCCEEEccCCccc
Q 044980          239 ISQVLDIFSAYGTYALVSLILSHC---QISAA--------LGKLSSLRNLDFSLNMLN  285 (313)
Q Consensus       239 ~~~~l~~~~~~~~~~L~~L~Ls~n---~l~~~--------~~~~~~L~~L~l~~n~l~  285 (313)
                      ....+...-.. ...|+.|+|++|   .+...        +...+.|+.|+++.|.+.
T Consensus       114 Ga~ala~aL~~-N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          114 LLARLLRSTLV-TQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHHHHTTT-TCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHHHHhh-CCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            55555443322 226999999865   34432        566688999999887654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.33  E-value=0.0007  Score=59.67  Aligned_cols=129  Identities=19%  Similarity=0.168  Sum_probs=61.8

Q ss_pred             hccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccc
Q 044980          119 LSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELS  198 (313)
Q Consensus       119 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~  198 (313)
                      +..+..|+.+.+..+ +.......+..+..|+.+.+..+ ++..-...|.++.+|+.+.+..+ +.......|..+.+|+
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~  289 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT  289 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred             cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence            445556666665443 22222223555556666666544 33233344555666666665433 2222223455566666


Q ss_pred             cccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEcc
Q 044980          199 SFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILS  260 (313)
Q Consensus       199 ~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls  260 (313)
                      .  +.+..+  .+..+-...|.++.+|+.+.+..+ +.......+..+.     +|+.+.+.
T Consensus       290 ~--i~l~~~--~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~-----~L~~i~ip  341 (379)
T 4h09_A          290 K--VVMDNS--AIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCK-----ALSTISYP  341 (379)
T ss_dssp             E--EEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT-----TCCCCCCC
T ss_pred             c--cccccc--ccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCC-----CCCEEEEC
Confidence            6  555443  233333445666666666666433 2222222333333     56666554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.59  E-value=0.0042  Score=45.87  Aligned_cols=53  Identities=21%  Similarity=0.303  Sum_probs=27.8

Q ss_pred             CEEEccCCCCC-CCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccc
Q 044980          226 TSIDFSSVKLS-QDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLN  285 (313)
Q Consensus       226 ~~L~l~~n~l~-~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~  285 (313)
                      ..++.+++.++ ..+|..+.  .     +|+.|+|++|+|+..    |..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~-----~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--V-----DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--T-----TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--c-----CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            35666666664 23332211  1     466666666665544    455556666666666543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.22  E-value=0.011  Score=43.55  Aligned_cols=35  Identities=26%  Similarity=0.339  Sum_probs=15.1

Q ss_pred             cCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCC
Q 044980          149 LFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQF  183 (313)
Q Consensus       149 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (313)
                      |++|+|++|.++..-+..|..+++|+.|+|.+|.+
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            44444444444422223334444444444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	313
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 74.0 bits (180), Expect = 1e-15
 Identities = 59/315 (18%), Positives = 112/315 (35%), Gaps = 36/315 (11%)

Query: 16  CKESERGALLKLKRNLKDLSNCLASWNIGDGDCC--KWVGNFCNNLTG--HILELNLENP 71
           C   ++ ALL++K++L +    L+SW     DCC   W+G  C+  T    +  L+L   
Sbjct: 3   CNPQDKQALLQIKKDLGN-PTTLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60

Query: 72  FGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLG 131
                Y               + NL  L +L +  I   L       ++ L  L ++ + 
Sbjct: 61  NLPKPYPIPSS----------LANLPYLNFLYIGGI-NNLVGPIPPAIAKLTQLHYLYIT 109

Query: 132 QVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWL 191
             ++  A   ++  ++ L  +  SYN   G +P ++ +L +L  I    N+ +   P   
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169

Query: 192 SKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGT 251
              ++L + +    + +         +        S +      S       +    +  
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 252 YALV--------------SLILSHCQIS----AALGKLSSLRNLDFSLNMLNGSIPLSLG 293
              +               L L + +I       L +L  L +L+ S N L G IP   G
Sbjct: 230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGG 288

Query: 294 QISHLEYLDLSNNKF 308
            +   +    +NNK 
Sbjct: 289 NLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.6 bits (88), Expect = 7e-04
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 142 WIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSP 188
            +  L+ L  + +S+N   G+IP   GNL        ++N+    SP
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.0 bits (144), Expect = 7e-11
 Identities = 37/184 (20%), Positives = 66/184 (35%), Gaps = 23/184 (12%)

Query: 125 LEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFN 184
           L+ + L    L       + SL +L  + L+ NQ     P  L  LT L ++ L  NQ +
Sbjct: 221 LDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 276

Query: 185 FTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLD 244
             SP              N +  +     L          LT +      +S       D
Sbjct: 277 NISPLAGLTALTNLELNENQLEDISPISNL--------KNLTYLTLYFNNIS-------D 321

Query: 245 IFSAYGTYALVSLILSHCQIS--AALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLD 302
           I        L  L  ++ ++S  ++L  L+++  L    N ++   P  L  ++ +  L 
Sbjct: 322 ISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLG 379

Query: 303 LSNN 306
           L++ 
Sbjct: 380 LNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 50/276 (18%), Positives = 86/276 (31%), Gaps = 26/276 (9%)

Query: 36  NCLASWNIGDGDCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGN 95
           N        +            NL    L  N  +    L    +     +      +  
Sbjct: 111 NLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP 170

Query: 96  LSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLS 155
           L+NL  L+   I      D         L   I              + +L  L    L+
Sbjct: 171 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS---LN 227

Query: 156 YNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSP-GWLSKLNELSSFLLNLVSCMVRFHQL 214
            NQ +     TL +LT+L  +DL++NQ +  +P   L+KL EL      + +        
Sbjct: 228 GNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLT 285

Query: 215 IPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS--AALGKLS 272
             T+                L                  L  L L    IS  + +  L+
Sbjct: 286 ALTNLELNENQLEDISPISNL----------------KNLTYLTLYFNNISDISPVSSLT 329

Query: 273 SLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
            L+ L F+ N ++     SL  ++++ +L   +N+ 
Sbjct: 330 KLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQI 363

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 37/220 (16%), Positives = 81/220 (36%), Gaps = 10/220 (4%)

Query: 93  VGNLSNLQYLDLSW--IDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF 150
           V  L+NL  ++ S   +     + +L+ L  +L+  +       L   ++    +L +  
Sbjct: 62  VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 121

Query: 151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVR 210
              +   +    +     +  ++  I       +     + +++ +L           + 
Sbjct: 122 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 181

Query: 211 FHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS--AAL 268
                 +    L KLT+++     L    +Q+ DI        L  L L+  Q+     L
Sbjct: 182 ISSNKVSDISVLAKLTNLES----LIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL 237

Query: 269 GKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
             L++L +LD + N ++   PLS   ++ L  L L  N+ 
Sbjct: 238 ASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQI 275

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 5/94 (5%)

Query: 106 WIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPS 165
                  ++ +S +S+L  L ++ L   ++   S   + SL  L  +  + N+      S
Sbjct: 290 LELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VS 345

Query: 166 TLGNLTSLKQIDLSHNQFNFTSP-GWLSKLNELS 198
           +L NLT++  +   HNQ +  +P   L+++ +L 
Sbjct: 346 SLANLTNINWLSAGHNQISDLTPLANLTRITQLG 379

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.2 bits (108), Expect = 2e-06
 Identities = 33/185 (17%), Positives = 60/185 (32%), Gaps = 11/185 (5%)

Query: 125 LEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFN 184
              +DL    + +  D    +L++L  ++L  N+     P     L  L+++ LS NQ  
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 185 FTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLD 244
                    L EL      +          +    +       +  S +          +
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI----------E 142

Query: 245 IFSAYGTYALVSLILSHCQISA-ALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDL 303
             +  G   L  + ++   I+    G   SL  L    N +      SL  +++L  L L
Sbjct: 143 NGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 304 SNNKF 308
           S N  
Sbjct: 203 SFNSI 207

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.3 bits (103), Expect = 9e-06
 Identities = 31/207 (14%), Positives = 71/207 (34%), Gaps = 11/207 (5%)

Query: 29  RNLKDLSNCLASWNIGDGDCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMR 88
           + L+   N +        +    +                   F  +K            
Sbjct: 103 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 162

Query: 89  SKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRH 148
           + +  G   +L  L L     ++     + L  L  L  + L    +    +  + +  H
Sbjct: 163 TTIPQGLPPSLTELHLDG--NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 220

Query: 149 LFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFN------FTSPGWLSKLNELSSFLL 202
           L  + L+ N+   K+P  L +   ++ + L +N  +      F  PG+ +K    S   +
Sbjct: 221 LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG--V 277

Query: 203 NLVSCMVRFHQLIPTSFIRLCKLTSID 229
           +L S  V++ ++ P++F  +    ++ 
Sbjct: 278 SLFSNPVQYWEIQPSTFRCVYVRAAVQ 304

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.2 bits (95), Expect = 9e-05
 Identities = 38/239 (15%), Positives = 77/239 (32%), Gaps = 42/239 (17%)

Query: 97  SNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSY 156
            +   LDL   + ++         +L  L  + L    + K S      L  L  + LS 
Sbjct: 31  PDTALLDLQ--NNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 157 NQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIP 216
           NQ +         L  L+  +    +   +    L+        ++ L +  ++   +  
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLN-----QMIVVELGTNPLKSSGIEN 143

Query: 217 TSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS----AALGKLS 272
            +F  + KL+ I  +   ++     +          +L  L L   +I+    A+L  L+
Sbjct: 144 GAFQGMKKLSYIRIADTNITTIPQGLPP--------SLTELHLDGNKITKVDAASLKGLN 195

Query: 273 SLRNLDFSLNMLNGSI-----------------------PLSLGQISHLEYLDLSNNKF 308
           +L  L  S N ++                          P  L    +++ + L NN  
Sbjct: 196 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 254

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 20/140 (14%), Positives = 45/140 (32%), Gaps = 6/140 (4%)

Query: 171 TSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDF 230
                +DL +N+      G    L  L + +L       +  ++ P +F  L KL  +  
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILI----NNKISKISPGAFAPLVKLERLYL 86

Query: 231 SSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAALGKLSSLRNLDFSLNMLNGSIPL 290
           S  +L +   ++             + I    +          +  L  +    +G    
Sbjct: 87  SKNQLKELPEKMPKTLQEL--RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 144

Query: 291 SLGQISHLEYLDLSNNKFVT 310
           +   +  L Y+ +++    T
Sbjct: 145 AFQGMKKLSYIRIADTNITT 164

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 5e-05
 Identities = 30/178 (16%), Positives = 47/178 (26%), Gaps = 17/178 (9%)

Query: 147 RHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTS-PGWLSKLNELSSFLLNLV 205
           +    + LS N       +TL   T L Q++L   +       G L  L  L      L 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 206 SCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQ-- 263
           S  +    L   + + +            L                  L   +L+     
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 264 -------------ISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
                         +  L  L +L  L    N L  +IP        L +  L  N +
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 3e-04
 Identities = 21/115 (18%), Positives = 45/115 (39%), Gaps = 7/115 (6%)

Query: 93  VGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI 152
           +  L  + +LDLS    R    +L+ L  L +L+  D    ++   ++           +
Sbjct: 16  LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQ-----EL 70

Query: 153 VLSYNQFQG-KIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVS 206
           +L  N+ Q       L +   L  ++L  N       G   +L E+   + ++++
Sbjct: 71  LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEMLPSVSSILT 124

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 8/77 (10%), Positives = 23/77 (29%)

Query: 127 HIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFT 186
            + L +  + +  +C     +     +   N  +          +    +D+S  + +  
Sbjct: 157 ILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 216

Query: 187 SPGWLSKLNELSSFLLN 203
               L  L +L +    
Sbjct: 217 PSYGLENLKKLRARSTY 233

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 25/213 (11%), Positives = 58/213 (27%), Gaps = 27/213 (12%)

Query: 95  NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVL 154
           +L  +  L          V ++  +  L  L  ++L    +   +     +      +  
Sbjct: 39  DLDGITTLSAF----GTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSG 94

Query: 155 SYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQL 214
           +  +    I       T         +         L  L    + + N+       +  
Sbjct: 95  NPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQ 154

Query: 215 IPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS--AALGKLS 272
             +         +   +  KL+   +                      +IS  + L  L 
Sbjct: 155 YLSIGNAQVSDLTPLANLSKLTTLKA-------------------DDNKISDISPLASLP 195

Query: 273 SLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSN 305
           +L  +    N ++   PL+    S+L  + L+N
Sbjct: 196 NLIEVHLKNNQISDVSPLA--NTSNLFIVTLTN 226

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 36/221 (16%), Positives = 72/221 (32%), Gaps = 7/221 (3%)

Query: 92  VVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYS-LRHLF 150
           V G L +   +        +    L+   S   ++H+DL    +  ++   I S    L 
Sbjct: 16  VTGRLLSQGVIAFRCPRSFM-DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 74

Query: 151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVR 210
            + L   +    I +TL   ++L +++LS               +      LNL  C   
Sbjct: 75  NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 134

Query: 211 F----HQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISA 266
                   +      + +L    +       D+S ++          L   ++       
Sbjct: 135 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 194

Query: 267 ALGKLSSLRNLDFS-LNMLNGSIPLSLGQISHLEYLDLSNN 306
              +L+ L++L  S    +     L LG+I  L+ L +   
Sbjct: 195 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 4/55 (7%)

Query: 254 LVSLILSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKF 308
           L  L +S+ ++         L  L  S N L   +P       +L+ L +  N  
Sbjct: 286 LEELNVSNNKLIELPALPPRLERLIASFNHLA-EVP---ELPQNLKQLHVEYNPL 336

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	313
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.87
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.87
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.86
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.85
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.84
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.82
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.67
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.65
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.63
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.6
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.59
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.58
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.56
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.52
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.49
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.44
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.44
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.41
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.4
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.3
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.15
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.14
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.11
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.38
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.38
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.78
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.68
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.09
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.99

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=4.7e-40  Score=285.44  Aligned_cols=276  Identities=25%  Similarity=0.391  Sum_probs=179.7

Q ss_pred             CCCHHhHHHHHHhhhhcccCCCCCCCCCCCCCCCcc--cCceEecCCC--CCEEEEecCC--------------CCCCcc
Q 044980           15 GCKESERGALLKLKRNLKDLSNCLASWNIGDGDCCK--WVGNFCNNLT--GHILELNLEN--------------PFGYLK   76 (313)
Q Consensus        15 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~c~--~~~v~c~~~~--~~v~~l~l~~--------------~l~~L~   76 (313)
                      -|.++|++||++||+++.+|. .+++|.. +.|||.  |.||.|+..+  ++|+.+++.+              ++++|+
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~~-~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~   79 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLSSWLP-TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN   79 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCT-TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-cCCCCCC-CCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCcccc
Confidence            389999999999999998875 5789986 789994  9999998644  4899988875              455666


Q ss_pred             eecCCC-CcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeec
Q 044980           77 YSDAED-DDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVL  154 (313)
Q Consensus        77 ~L~l~~-n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  154 (313)
                      +|++++ |.+.|.+|+.++++++|++|+|++|.+   .+..+ .+..+..|+++++++|.+.+.+|..+..+++++++++
T Consensus        80 ~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l---~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l  156 (313)
T d1ogqa_          80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV---SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF  156 (313)
T ss_dssp             EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECC---EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             ccccccccccccccccccccccccchhhhccccc---cccccccccchhhhcccccccccccccCchhhccCcccceeec
Confidence            666654 556666666666666666666666654   12122 3555566666666666665555555666666666666


Q ss_pred             cCcccCcCCCCCCCCCCCC-CEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCC
Q 044980          155 SYNQFQGKIPSTLGNLTSL-KQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSV  233 (313)
Q Consensus       155 ~~n~~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n  233 (313)
                      ++|.+.+.+|..+..+.++ +.+++++|++++..|..+..+..+ .  +++..+  ...+.+|..++.+++++.+++++|
T Consensus       157 ~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~--l~l~~~--~~~~~~~~~~~~~~~l~~l~~~~~  231 (313)
T d1ogqa_         157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-F--VDLSRN--MLEGDASVLFGSDKNTQKIHLAKN  231 (313)
T ss_dssp             CSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-E--EECCSS--EEEECCGGGCCTTSCCSEEECCSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc-c--cccccc--cccccccccccccccccccccccc
Confidence            6666666666655555553 556666666665555555444322 2  444444  444456666666677777777777


Q ss_pred             CCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCc
Q 044980          234 KLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNK  307 (313)
Q Consensus       234 ~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~  307 (313)
                      .+.+.++ .+..++     +|+.|++++|+++|.    ++++++|++|+|++|+++|.+|. ++++++|+.+++++|+
T Consensus       232 ~l~~~~~-~~~~~~-----~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         232 SLAFDLG-KVGLSK-----NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             EECCBGG-GCCCCT-----TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             ccccccc-cccccc-----ccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence            7766544 344444     677777777776654    66667777777777777776764 4566677777777775

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=5.1e-28  Score=209.04  Aligned_cols=250  Identities=20%  Similarity=0.289  Sum_probs=214.4

Q ss_pred             cccC-ceEecCC-CCCEEEEecCCCCCCcceecCCCCcccc--cccccccCCCCCcEeeccC-CCCCCCCCCch-hhccC
Q 044980           49 CKWV-GNFCNNL-TGHILELNLENPFGYLKYSDAEDDDHYM--RSKLVVGNLSNLQYLDLSW-IDCRLHVDSLS-WLSSL  122 (313)
Q Consensus        49 c~~~-~v~c~~~-~~~v~~l~l~~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~L~~-n~~~~~~~~~~-~~~~l  122 (313)
                      -.|. +..|-.. -..|+.-. .+.-.+++.|+++++.+.+  .+|++++++++|++|+|++ |.+   .+.+| .+.++
T Consensus        25 ~sW~~~~d~C~~~w~gv~C~~-~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l---~g~iP~~i~~L  100 (313)
T d1ogqa_          25 SSWLPTTDCCNRTWLGVLCDT-DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL---VGPIPPAIAKL  100 (313)
T ss_dssp             TTCCTTSCTTTTCSTTEEECC-SSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE---ESCCCGGGGGC
T ss_pred             CCCCCCCCCCCCcCCCeEEeC-CCCcEEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccc---ccccccccccc
Confidence            4574 4444221 23566533 2244589999999999987  4789999999999999986 664   45566 79999


Q ss_pred             CCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccc-cccc
Q 044980          123 LLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNEL-SSFL  201 (313)
Q Consensus       123 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L-~~~~  201 (313)
                      ++|++|++++|.+.+..+..+..+.+|++++++.|.+.+.+|..+.++++++.+++++|.+.+.+|..+..+..+ +.  
T Consensus       101 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~--  178 (313)
T d1ogqa_         101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS--  178 (313)
T ss_dssp             TTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCE--
T ss_pred             cccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccc--
Confidence            999999999999999888889999999999999999999999999999999999999999999999989888776 66  


Q ss_pred             ccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc---ccCCCCCCEEE
Q 044980          202 LNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA---LGKLSSLRNLD  278 (313)
Q Consensus       202 L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~~~L~~L~  278 (313)
                      +.+++|  .+.+..|..+..+. ...++++.+...+.+|..+..++     +++.+++++|.+++.   +..+++|+.|+
T Consensus       179 l~~~~n--~l~~~~~~~~~~l~-~~~l~l~~~~~~~~~~~~~~~~~-----~l~~l~~~~~~l~~~~~~~~~~~~L~~L~  250 (313)
T d1ogqa_         179 MTISRN--RLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK-----NTQKIHLAKNSLAFDLGKVGLSKNLNGLD  250 (313)
T ss_dssp             EECCSS--EEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTS-----CCSEEECCSSEECCBGGGCCCCTTCCEEE
T ss_pred             cccccc--cccccccccccccc-ccccccccccccccccccccccc-----ccccccccccccccccccccccccccccc
Confidence            777777  77778888888875 45799999999999988888888     999999999999877   67789999999


Q ss_pred             ccCCccccccCccccCCCCCCEeeCCCCcCcccc
Q 044980          279 FSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTKK  312 (313)
Q Consensus       279 l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~~~  312 (313)
                      +++|+++|.+|.+++++++|++|++++|+|+|++
T Consensus       251 Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~i  284 (313)
T d1ogqa_         251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI  284 (313)
T ss_dssp             CCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             CccCeecccCChHHhCCCCCCEEECcCCcccccC
Confidence            9999999999999999999999999999999865

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=9.3e-23  Score=173.30  Aligned_cols=201  Identities=19%  Similarity=0.147  Sum_probs=118.3

Q ss_pred             CcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcC-CccCCCCCchhhhhcCccCee
Q 044980           74 YLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLG-QVHLGKASDCWIYSLRHLFFI  152 (313)
Q Consensus        74 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L  152 (313)
                      .++.|++++|+++..-+.+|.+++.|++|++++|.+...  ....+..+..++.++.. .+.++...+..+..+++|++|
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i--~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L  110 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI--DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE--CTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCEEECcCCcCCCCCHHHhhcccccccccccccccccc--ccccccccccccccccccccccccccchhhcccccCCEE
Confidence            466677777776654444566667777777776664111  11134455566666543 444555545556666666666


Q ss_pred             eccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccC
Q 044980          153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSS  232 (313)
Q Consensus       153 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~  232 (313)
                      ++++|.+....+..+...++|+.+++++|.+++..+..+..++.|+.  |++.+|  .+....+..+.++++|+.+++++
T Consensus       111 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~--L~l~~N--~l~~l~~~~f~~l~~L~~l~l~~  186 (284)
T d1ozna_         111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH--LFLHGN--RISSVPERAFRGLHSLDRLLLHQ  186 (284)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE--EECCSS--CCCEECTTTTTTCTTCCEEECCS
T ss_pred             ecCCcccccccccccchhcccchhhhccccccccChhHhccccchhh--cccccC--cccccchhhhccccccchhhhhh
Confidence            66666665444555556666666666666666544555656666666  666665  45555555566666666666666


Q ss_pred             CCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccc
Q 044980          233 VKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLN  285 (313)
Q Consensus       233 n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~  285 (313)
                      |.+.+..|..+..++     +|+.|++++|.+.+.    +..+++|++|++++|.+.
T Consensus       187 N~l~~i~~~~f~~l~-----~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         187 NRVAHVHPHAFRDLG-----RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             SCCCEECTTTTTTCT-----TCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccccccChhHhhhhh-----hcccccccccccccccccccccccccCEEEecCCCCC
Confidence            666655555555555     566666666655544    455555666666665555

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.5e-22  Score=169.05  Aligned_cols=190  Identities=22%  Similarity=0.177  Sum_probs=107.9

Q ss_pred             ceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch--hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeee
Q 044980           76 KYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS--WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIV  153 (313)
Q Consensus        76 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  153 (313)
                      ..++.++++++. +|+.+.  +++++|+|++|.+    ..++  +|.++++|++|++++|.++.. +. +..+++|++|+
T Consensus        13 ~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i----~~l~~~~f~~l~~L~~L~L~~N~l~~l-~~-~~~l~~L~~L~   83 (266)
T d1p9ag_          13 LEVNCDKRNLTA-LPPDLP--KDTTILHLSENLL----YTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGTLD   83 (266)
T ss_dssp             CEEECTTSCCSS-CCSCCC--TTCCEEECTTSCC----SEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCEEE
T ss_pred             eEEEccCCCCCe-eCcCcC--cCCCEEECcCCcC----CCcCHHHhhcccccccccccccccccc-cc-ccccccccccc
Confidence            334555566653 555443  4567777777764    1222  456666677777777666542 21 34566666666


Q ss_pred             ccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCC
Q 044980          154 LSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSV  233 (313)
Q Consensus       154 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n  233 (313)
                      +++|+++ ..+..+..+++|++|++++|.+.+..+..+..+                            .+++.|++++|
T Consensus        84 Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l----------------------------~~l~~L~l~~n  134 (266)
T d1p9ag_          84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL----------------------------GELQELYLKGN  134 (266)
T ss_dssp             CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTC----------------------------TTCCEEECTTS
T ss_pred             ccccccc-ccccccccccccccccccccccceeeccccccc----------------------------ccccccccccc
Confidence            6666665 345555666666666666666554444334444                            44555555555


Q ss_pred             CCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCc
Q 044980          234 KLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFV  309 (313)
Q Consensus       234 ~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~  309 (313)
                      .+....+..+..++     .++.+++++|++++.    +..+++|++|+|++|+|+ .+|..+..+++|+.|++++|.+.
T Consensus       135 ~l~~l~~~~~~~l~-----~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         135 ELKTLPPGLLTPTP-----KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCCCCCTTTTTTCT-----TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccceeccccccccc-----cchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            55544444444444     555555555555443    445566666666666666 66666666666666666666554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.87  E-value=5.8e-21  Score=163.65  Aligned_cols=241  Identities=15%  Similarity=0.097  Sum_probs=169.7

Q ss_pred             CCcccCceEecCCCCCEEEEecCCCCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCC
Q 044980           47 DCCKWVGNFCNNLTGHILELNLENPFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLL  125 (313)
Q Consensus        47 ~~c~~~~v~c~~~~~~v~~l~l~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L  125 (313)
                      .-|.|..+.|....  ++++-- +-.+++++|++++|+++...+.+|.++++|++|++++|.+   ....| .|.+++.|
T Consensus         8 c~c~~~~~~C~~~~--L~~lP~-~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~---~~i~~~~f~~l~~L   81 (305)
T d1xkua_           8 CQCHLRVVQCSDLG--LEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI---SKISPGAFAPLVKL   81 (305)
T ss_dssp             CEEETTEEECTTSC--CCSCCC-SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC---CCBCTTTTTTCTTC
T ss_pred             CEecCCEEEecCCC--CCccCC-CCCCCCCEEECcCCcCCCcChhHhhccccccccccccccc---cccchhhhhCCCcc
Confidence            33889999997522  332211 1135788889988888765555788888999999988885   22223 57788888


Q ss_pred             CEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcC--------------------------CCCCCCCCCCCCEEEcc
Q 044980          126 EHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGK--------------------------IPSTLGNLTSLKQIDLS  179 (313)
Q Consensus       126 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~--------------------------~~~~~~~l~~L~~L~l~  179 (313)
                      +++++++|+++.....   ....++.|.+..|.+.+.                          .+..+..+++|++++++
T Consensus        82 ~~L~l~~n~l~~l~~~---~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~  158 (305)
T d1xkua_          82 ERLYLSKNQLKELPEK---MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA  158 (305)
T ss_dssp             CEEECCSSCCSBCCSS---CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred             CEecccCCccCcCccc---hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccc
Confidence            8888888887654321   223455555555544322                          23345567788888888


Q ss_pred             CCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEc
Q 044980          180 HNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLIL  259 (313)
Q Consensus       180 ~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~L  259 (313)
                      +|.+.. +|..  ..++++.  +++.+|  ......+..+.+++.++.|++++|.+.+..+..+..++     +|+.|+|
T Consensus       159 ~n~l~~-l~~~--~~~~L~~--L~l~~n--~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~-----~L~~L~L  226 (305)
T d1xkua_         159 DTNITT-IPQG--LPPSLTE--LHLDGN--KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP-----HLRELHL  226 (305)
T ss_dssp             SSCCCS-CCSS--CCTTCSE--EECTTS--CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST-----TCCEEEC
T ss_pred             cCCccc-cCcc--cCCccCE--EECCCC--cCCCCChhHhhccccccccccccccccccccccccccc-----cceeeec
Confidence            888763 4432  2567788  777777  55666777888888899999999998877777777777     8999999


Q ss_pred             cccccccc---ccCCCCCCEEEccCCccccccCc-c------ccCCCCCCEeeCCCCcCc
Q 044980          260 SHCQISAA---LGKLSSLRNLDFSLNMLNGSIPL-S------LGQISHLEYLDLSNNKFV  309 (313)
Q Consensus       260 s~n~l~~~---~~~~~~L~~L~l~~n~l~~~ip~-~------l~~l~~L~~L~l~~n~l~  309 (313)
                      ++|.++..   +..+++|++|+|++|+|+ .++. .      ....++|+.|++++|+++
T Consensus       227 ~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~-~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         227 NNNKLVKVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CSSCCSSCCTTTTTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccccccccccccccccCCCEEECCCCccC-ccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            99988765   778889999999999988 4433 2      234678899999999875

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2e-21  Score=164.92  Aligned_cols=208  Identities=20%  Similarity=0.202  Sum_probs=161.0

Q ss_pred             ccccccCCCCCcEeeccCCCCCCCCCCch--hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeecc-CcccCcCCCC
Q 044980           89 SKLVVGNLSNLQYLDLSWIDCRLHVDSLS--WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLS-YNQFQGKIPS  165 (313)
Q Consensus        89 ~~~~l~~l~~L~~L~L~~n~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~-~n~~~~~~~~  165 (313)
                      +|..+.  +.+++|+|++|++    ..+|  +|.+++.|+++++++|.+....+..+..+..++.+... .+.++...+.
T Consensus        26 iP~~ip--~~~~~L~Ls~N~i----~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~   99 (284)
T d1ozna_          26 VPVGIP--AASQRIFLHGNRI----SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA   99 (284)
T ss_dssp             CCTTCC--TTCSEEECTTSCC----CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred             cCCCCC--CCCCEEECcCCcC----CCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccch
Confidence            454443  4678888888886    2232  57788888899998888887766667777778877654 4556555567


Q ss_pred             CCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhh
Q 044980          166 TLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDI  245 (313)
Q Consensus       166 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  245 (313)
                      .+.++++|++|++++|.+....+..+....+|+.  +++.+|  .+.+..+..+..+.+|++|++++|.+.+..+..+..
T Consensus       100 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~--l~l~~N--~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~  175 (284)
T d1ozna_         100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY--LYLQDN--ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG  175 (284)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE--EECCSS--CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             hhcccccCCEEecCCcccccccccccchhcccch--hhhccc--cccccChhHhccccchhhcccccCcccccchhhhcc
Confidence            7888888899998888887666667777888888  888887  666666677888888888999888888766667777


Q ss_pred             hccccccCccEEEccccccccc----ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCccc
Q 044980          246 FSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVTK  311 (313)
Q Consensus       246 ~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~~  311 (313)
                      ++     +|+.+++++|++++.    +..+++|++|++++|.+.+..+..+..+++|++|++++|++.++
T Consensus       176 l~-----~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         176 LH-----SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             CT-----TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             cc-----ccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence            77     888888888888765    77788888899998888877777888888888999988887753

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.86  E-value=2.5e-20  Score=164.28  Aligned_cols=60  Identities=13%  Similarity=0.058  Sum_probs=39.4

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCC
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLG  136 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~  136 (313)
                      .+++|++|++++|.+++. + .++++++|++|++++|.+    ..++.+.++++|+.++++++.++
T Consensus        64 ~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i----~~i~~l~~l~~L~~L~~~~~~~~  123 (384)
T d2omza2          64 YLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQI----ADITPLANLTNLTGLTLFNNQIT  123 (384)
T ss_dssp             GCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCC----CCCGGGTTCTTCCEEECCSSCCC
T ss_pred             cCCCCCEEeCcCCcCCCC-c-cccCCccccccccccccc----ccccccccccccccccccccccc
Confidence            567777777777777653 3 277777777777777775    23344666666666666655544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=1.1e-20  Score=161.87  Aligned_cols=213  Identities=21%  Similarity=0.236  Sum_probs=161.2

Q ss_pred             cceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch--hhccCCCCCEEEcCCccCCCCCchhhhhcCccCee
Q 044980           75 LKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS--WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI  152 (313)
Q Consensus        75 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  152 (313)
                      .+.++.++++++ .+|..+.  +.+++|+|++|.+    ..++  +|.++++|++|++++|.+....|..+..+++|++|
T Consensus        12 ~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i----~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L   84 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKI----TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL   84 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCC----CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcC----CCcChhHhhccccccccccccccccccchhhhhCCCccCEe
Confidence            345666666666 4677664  6899999999996    3333  58899999999999999998888889999999999


Q ss_pred             eccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhc--------------------------Ccccccccccccc
Q 044980          153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSK--------------------------LNELSSFLLNLVS  206 (313)
Q Consensus       153 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~--------------------------l~~L~~~~L~l~~  206 (313)
                      ++++|+++ .+|..+  ...++.|++.+|.+.+..+..+..                          +++|+.  +++.+
T Consensus        85 ~l~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~--l~l~~  159 (305)
T d1xkua_          85 YLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY--IRIAD  159 (305)
T ss_dssp             ECCSSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE--EECCS
T ss_pred             cccCCccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCc--ccccc
Confidence            99999998 566543  357888888888776543333333                          334444  44444


Q ss_pred             cccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCC
Q 044980          207 CMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLN  282 (313)
Q Consensus       207 n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n  282 (313)
                      |  .+.. +|..  ..++++.|++++|...+..+..+..++     .++.|++++|.+++.    +..+++|++|+|++|
T Consensus       160 n--~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~-----~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N  229 (305)
T d1xkua_         160 T--NITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLN-----NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN  229 (305)
T ss_dssp             S--CCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCT-----TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred             C--Cccc-cCcc--cCCccCEEECCCCcCCCCChhHhhccc-----cccccccccccccccccccccccccceeeecccc
Confidence            3  2221 2322  245677777777777766666666666     899999999998876    778899999999999


Q ss_pred             ccccccCccccCCCCCCEeeCCCCcCcc
Q 044980          283 MLNGSIPLSLGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       283 ~l~~~ip~~l~~l~~L~~L~l~~n~l~~  310 (313)
                      .++ .+|..+..+++|++|++++|+|+.
T Consensus       230 ~L~-~lp~~l~~l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         230 KLV-KVPGGLADHKYIQVVYLHNNNISA  256 (305)
T ss_dssp             CCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             ccc-ccccccccccCCCEEECCCCccCc
Confidence            999 789999999999999999999874

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=7.8e-21  Score=159.73  Aligned_cols=179  Identities=18%  Similarity=0.150  Sum_probs=157.2

Q ss_pred             CCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCee
Q 044980           73 GYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFI  152 (313)
Q Consensus        73 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  152 (313)
                      ++++.|++++|.+++..+.+|.++++|++|+|++|.+    ..++.+..+++|++|++++|++... +..+..+++|++|
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l----~~l~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L  105 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL----TKLQVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVL  105 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC----CEEECCSCCTTCCEEECCSSCCSSC-CCCTTTCTTCCEE
T ss_pred             cCCCEEECcCCcCCCcCHHHhhccccccccccccccc----ccccccccccccccccccccccccc-ccccccccccccc
Confidence            4799999999999987667899999999999999996    3466678899999999999999875 4457889999999


Q ss_pred             eccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccC
Q 044980          153 VLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSS  232 (313)
Q Consensus       153 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~  232 (313)
                      ++++|.+....+..+..+.++++|++++|.+....+..+..++.++.  +++++|  .+....+..+..+++|++|++++
T Consensus       106 ~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~--l~l~~N--~l~~~~~~~~~~l~~L~~L~Ls~  181 (266)
T d1p9ag_         106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK--LSLANN--NLTELPAGLLNGLENLDTLLLQE  181 (266)
T ss_dssp             ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE--EECTTS--CCSCCCTTTTTTCTTCCEEECCS
T ss_pred             cccccccceeeccccccccccccccccccccceeccccccccccchh--cccccc--cccccCccccccccccceeeccc
Confidence            99999999777778889999999999999999777777888999999  999999  77777788899999999999999


Q ss_pred             CCCCCCcchhhhhhccccccCccEEEcccccccc
Q 044980          233 VKLSQDISQVLDIFSAYGTYALVSLILSHCQISA  266 (313)
Q Consensus       233 n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~  266 (313)
                      |.++ .+|+.+..++     +|+.|+|++|.+..
T Consensus       182 N~L~-~lp~~~~~~~-----~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         182 NSLY-TIPKGFFGSH-----LLPFAFLHGNPWLC  209 (266)
T ss_dssp             SCCC-CCCTTTTTTC-----CCSEEECCSCCBCC
T ss_pred             CCCc-ccChhHCCCC-----CCCEEEecCCCCCC
Confidence            9998 6777777777     89999999998764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.84  E-value=1.9e-19  Score=158.50  Aligned_cols=215  Identities=23%  Similarity=0.265  Sum_probs=142.0

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCC--------------------------------------
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLH--------------------------------------  112 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~--------------------------------------  112 (313)
                      ++++|+.|++++|.+.+..  .++++++|+.|+++++.+...                                      
T Consensus        86 ~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  163 (384)
T d2omza2          86 NLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN  163 (384)
T ss_dssp             TCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEE
T ss_pred             CCccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            7899999999999998643  378999999999988765110                                      


Q ss_pred             -----------------------CCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCC
Q 044980          113 -----------------------VDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGN  169 (313)
Q Consensus       113 -----------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~  169 (313)
                                             ......+..++.++.+++++|.+++..|  ....++|++|++++|.++. + +.+..
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~  239 (384)
T d2omza2         164 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLAS  239 (384)
T ss_dssp             SCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGG
T ss_pred             ccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhc
Confidence                                   0001134455677778888877776544  4556677777777777763 3 24566


Q ss_pred             CCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccc--------------------cccccccCCCcCEEE
Q 044980          170 LTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQL--------------------IPTSFIRLCKLTSID  229 (313)
Q Consensus       170 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~--------------------~~~~~~~~~~L~~L~  229 (313)
                      +++|+.+++++|.+++..+  +..+++|+.  ++++++  .+...                    -+..+..+.+++.|+
T Consensus       240 l~~L~~L~l~~n~l~~~~~--~~~~~~L~~--L~l~~~--~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~  313 (384)
T d2omza2         240 LTNLTDLDLANNQISNLAP--LSGLTKLTE--LKLGAN--QISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLT  313 (384)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GTTCTTCSE--EECCSS--CCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEE
T ss_pred             ccccchhccccCccCCCCc--ccccccCCE--eeccCc--ccCCCCccccccccccccccccccccccccchhcccCeEE
Confidence            7777777777777764332  566667777  666555  22111                    122355566777777


Q ss_pred             ccCCCCCCCcchhhhhhccccccCccEEEccccccccc--ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCC
Q 044980          230 FSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNN  306 (313)
Q Consensus       230 l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n  306 (313)
                      +++|++.+..+  +..++     +|+.|++++|++++.  +..+++|++|++++|++++..|  +.++++|+.|++++|
T Consensus       314 ls~n~l~~l~~--l~~l~-----~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         314 LYFNNISDISP--VSSLT-----KLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCSSCCSCCGG--GGGCT-----TCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCCCCCcc--cccCC-----CCCEEECCCCCCCCChhHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            77777765422  45555     777777777777655  6677777777777777774333  667777777777776

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.82  E-value=1.1e-19  Score=149.05  Aligned_cols=204  Identities=19%  Similarity=0.214  Sum_probs=156.9

Q ss_pred             cceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeec
Q 044980           75 LKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVL  154 (313)
Q Consensus        75 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  154 (313)
                      +..+++..+.+++.+  .+..+..|++|++.+|.+    ..++.+..+++|++|++++|.+++..+  +..+++|+++++
T Consensus        21 ~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i----~~l~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~   92 (227)
T d1h6ua2          21 AIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGV----TTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELEL   92 (227)
T ss_dssp             HHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCC----CCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEEC
T ss_pred             HHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCC----CcchhHhcCCCCcEeecCCceeecccc--cccccccccccc
Confidence            344566666666544  345678899999999986    345568889999999999999887654  788889999999


Q ss_pred             cCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCC
Q 044980          155 SYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVK  234 (313)
Q Consensus       155 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~  234 (313)
                      ++|.++ .++ .+..+++|+.++++++...+..  .+...+.+..  +.++.+  .+..  ...+..+++|+.|++++|.
T Consensus        93 ~~n~~~-~i~-~l~~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~--l~~~~~--~~~~--~~~~~~~~~L~~L~l~~n~  162 (227)
T d1h6ua2          93 SGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQV--LYLDLN--QITN--ISPLAGLTNLQYLSIGNAQ  162 (227)
T ss_dssp             CSCCCS-CCG-GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCE--EECCSS--CCCC--CGGGGGCTTCCEEECCSSC
T ss_pred             cccccc-ccc-cccccccccccccccccccccc--hhccccchhh--hhchhh--hhch--hhhhccccccccccccccc
Confidence            999887 443 4678899999999998876432  3556677777  666665  3222  2346778899999999999


Q ss_pred             CCCCcchhhhhhccccccCccEEEccccccccc--ccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCC
Q 044980          235 LSQDISQVLDIFSAYGTYALVSLILSHCQISAA--LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSN  305 (313)
Q Consensus       235 l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~  305 (313)
                      +.+..+  +..++     +|+.|++++|++++.  +..+++|++|++++|+++ .++. +..+++|++|++++
T Consensus       163 ~~~~~~--l~~l~-----~L~~L~Ls~n~l~~l~~l~~l~~L~~L~Ls~N~lt-~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         163 VSDLTP--LANLS-----KLTTLKADDNKISDISPLASLPNLIEVHLKNNQIS-DVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             CCCCGG--GTTCT-----TCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCC-BCGG-GTTCTTCCEEEEEE
T ss_pred             cccchh--hcccc-----cceecccCCCccCCChhhcCCCCCCEEECcCCcCC-CCcc-cccCCCCCEEEeeC
Confidence            876433  56666     999999999999876  788999999999999999 5654 78999999999873

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=5.8e-18  Score=136.84  Aligned_cols=162  Identities=25%  Similarity=0.293  Sum_probs=96.8

Q ss_pred             CCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccc
Q 044980          123 LLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLL  202 (313)
Q Consensus       123 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L  202 (313)
                      ..|++|++++|.+....  .+..+++|++|++++|++++ ++ .+..+++|++|++++|++++ +| .+..+++|+.  +
T Consensus        46 ~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~--L  117 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS--L  117 (210)
T ss_dssp             HTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE--E
T ss_pred             cCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccccc-cc-cccccccccc--c
Confidence            34444444444444321  13444455555555555442 22 13445555555555555442 22 2444555555  4


Q ss_pred             cccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc--ccCCCCCCEEEcc
Q 044980          203 NLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--LGKLSSLRNLDFS  280 (313)
Q Consensus       203 ~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~L~~L~l~  280 (313)
                      ++.+|  ...  -...+..+++++.+++++|.+.+.  ..+..++     +|+.+++++|++++.  +..+++|++|+++
T Consensus       118 ~l~~~--~~~--~~~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~-----~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls  186 (210)
T d1h6ta2         118 SLEHN--GIS--DINGLVHLPQLESLYLGNNKITDI--TVLSRLT-----KLDTLSLEDNQISDIVPLAGLTKLQNLYLS  186 (210)
T ss_dssp             ECTTS--CCC--CCGGGGGCTTCCEEECCSSCCCCC--GGGGGCT-----TCSEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred             ccccc--ccc--cccccccccccccccccccccccc--ccccccc-----cccccccccccccccccccCCCCCCEEECC
Confidence            44444  111  122355566778888888877653  2345555     788888888888766  7788899999999


Q ss_pred             CCccccccCccccCCCCCCEeeCCC
Q 044980          281 LNMLNGSIPLSLGQISHLEYLDLSN  305 (313)
Q Consensus       281 ~n~l~~~ip~~l~~l~~L~~L~l~~  305 (313)
                      +|+++ .+| .+.++++|++|++++
T Consensus       187 ~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         187 KNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             SSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             CCCCC-CCh-hhcCCCCCCEEEccC
Confidence            99988 566 488899999999864

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=3.6e-17  Score=133.71  Aligned_cols=186  Identities=24%  Similarity=0.206  Sum_probs=151.3

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF  150 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  150 (313)
                      ++.+|+.|++.+|.++. + +.+.++++|++|++++|.+    ..++.+.++++++++++++|.++.. + .+..+++|+
T Consensus        39 ~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i----~~~~~l~~l~~l~~l~~~~n~~~~i-~-~l~~l~~L~  110 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQI----TDLAPLKNLTKITELELSGNPLKNV-S-AIAGLQSIK  110 (227)
T ss_dssp             HHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCC----CCCGGGTTCCSCCEEECCSCCCSCC-G-GGTTCTTCC
T ss_pred             HcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCcee----ecccccccccccccccccccccccc-c-ccccccccc
Confidence            56778999999999885 4 3588999999999999986    3345589999999999999988754 2 378899999


Q ss_pred             eeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEc
Q 044980          151 FIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDF  230 (313)
Q Consensus       151 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l  230 (313)
                      ++.++++...+.  ..+...+.++.+.++++.+....  .+..+++|+.  +.+.+|  .+..  ...++++++|+.|++
T Consensus       111 ~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~--L~l~~n--~~~~--~~~l~~l~~L~~L~L  180 (227)
T d1h6ua2         111 TLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQY--LSIGNA--QVSD--LTPLANLSKLTTLKA  180 (227)
T ss_dssp             EEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCE--EECCSS--CCCC--CGGGTTCTTCCEEEC
T ss_pred             cccccccccccc--chhccccchhhhhchhhhhchhh--hhcccccccc--cccccc--cccc--chhhcccccceeccc
Confidence            999999987643  33566789999999999887543  3778889999  888887  4332  234788999999999


Q ss_pred             cCCCCCCCcchhhhhhccccccCccEEEccccccccc--ccCCCCCCEEEccC
Q 044980          231 SSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--LGKLSSLRNLDFSL  281 (313)
Q Consensus       231 ~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~L~~L~l~~  281 (313)
                      ++|++.+. + .+..++     +|+.|++++|++++.  +..+++|+.|++++
T Consensus       181 s~n~l~~l-~-~l~~l~-----~L~~L~Ls~N~lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         181 DDNKISDI-S-PLASLP-----NLIEVHLKNNQISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             CSSCCCCC-G-GGGGCT-----TCCEEECTTSCCCBCGGGTTCTTCCEEEEEE
T ss_pred             CCCccCCC-h-hhcCCC-----CCCEEECcCCcCCCCcccccCCCCCEEEeeC
Confidence            99999864 3 367777     999999999999877  78999999999974

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=2.3e-17  Score=132.11  Aligned_cols=160  Identities=27%  Similarity=0.364  Sum_probs=92.0

Q ss_pred             CCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCC
Q 044980           95 NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLK  174 (313)
Q Consensus        95 ~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~  174 (313)
                      .+..+++|++++|.+    ..++.+..+++|++|++++|.+++..+  +..+++|++|++++|.+. .++ .+.++++|+
T Consensus        38 ~l~~l~~L~l~~~~i----~~l~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~  109 (199)
T d2omxa2          38 DLDQVTTLQADRLGI----KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT-PLANLTNLT  109 (199)
T ss_dssp             HHTTCCEEECTTSCC----CCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCS
T ss_pred             HhcCCCEEECCCCCC----CCccccccCCCcCcCccccccccCccc--ccCCcccccccccccccc-ccc-ccccccccc
Confidence            344555555555553    122334445555555555555544322  444444555555544443 222 234444444


Q ss_pred             EEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCc
Q 044980          175 QIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYAL  254 (313)
Q Consensus       175 ~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L  254 (313)
                      .|++++|....                              ...+..+++|+.|++++|.+...  +.+..++     +|
T Consensus       110 ~L~l~~~~~~~------------------------------~~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~-----~L  152 (199)
T d2omxa2         110 GLTLFNNQITD------------------------------IDPLKNLTNLNRLELSSNTISDI--SALSGLT-----SL  152 (199)
T ss_dssp             EEECCSSCCCC------------------------------CGGGTTCTTCSEEECCSSCCCCC--GGGTTCT-----TC
T ss_pred             ccccccccccc------------------------------ccccchhhhhHHhhhhhhhhccc--ccccccc-----cc
Confidence            44444444332                              12244566777777777777642  2355555     78


Q ss_pred             cEEEccccccccc--ccCCCCCCEEEccCCccccccCccccCCCCCCEe
Q 044980          255 VSLILSHCQISAA--LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYL  301 (313)
Q Consensus       255 ~~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L  301 (313)
                      +.|++++|++++.  +.++++|++|++++|+++ .++ .+.++++|++|
T Consensus       153 ~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~i~-~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         153 QQLNFSSNQVTDLKPLANLTTLERLDISSNKVS-DIS-VLAKLTNLESL  199 (199)
T ss_dssp             SEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-CCG-GGGGCTTCSEE
T ss_pred             cccccccccccCCccccCCCCCCEEECCCCCCC-CCc-cccCCCCCCcC
Confidence            8888888887766  777888999999999888 455 47788888775

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=9.1e-17  Score=128.60  Aligned_cols=146  Identities=27%  Similarity=0.373  Sum_probs=94.2

Q ss_pred             cCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCc
Q 044980          146 LRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKL  225 (313)
Q Consensus       146 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L  225 (313)
                      +.++++|++++|.++ .++ .+..+++|++|++++|.+++..|  ++++++|+.  +++++|  .+.. ++ .+.++++|
T Consensus        39 l~~l~~L~l~~~~i~-~l~-~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~--L~l~~n--~~~~-~~-~l~~l~~L  108 (199)
T d2omxa2          39 LDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVD--ILMNNN--QIAD-IT-PLANLTNL  108 (199)
T ss_dssp             HTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCE--EECCSS--CCCC-CG-GGTTCTTC
T ss_pred             hcCCCEEECCCCCCC-Ccc-ccccCCCcCcCccccccccCccc--ccCCccccc--cccccc--cccc-cc-cccccccc
Confidence            334444444444443 121 23344444444444444443211  444444444  444444  1111 12 25567788


Q ss_pred             CEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc--ccCCCCCCEEEccCCccccccCccccCCCCCCEeeC
Q 044980          226 TSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--LGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDL  303 (313)
Q Consensus       226 ~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l  303 (313)
                      +.|++++|.....  ..+..++     +|+.|++++|++...  +..+++|+.|++.+|++++ ++. +.++++|++|++
T Consensus       109 ~~L~l~~~~~~~~--~~~~~l~-----~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~-l~~-l~~l~~L~~L~l  179 (199)
T d2omxa2         109 TGLTLFNNQITDI--DPLKNLT-----NLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTD-LKP-LANLTTLERLDI  179 (199)
T ss_dssp             SEEECCSSCCCCC--GGGTTCT-----TCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEEC
T ss_pred             ccccccccccccc--cccchhh-----hhHHhhhhhhhhcccccccccccccccccccccccC-Ccc-ccCCCCCCEEEC
Confidence            8999988888754  2355666     999999999998876  7889999999999999984 543 789999999999


Q ss_pred             CCCcCcc
Q 044980          304 SNNKFVT  310 (313)
Q Consensus       304 ~~n~l~~  310 (313)
                      ++|++++
T Consensus       180 s~N~i~~  186 (199)
T d2omxa2         180 SSNKVSD  186 (199)
T ss_dssp             CSSCCCC
T ss_pred             CCCCCCC
Confidence            9999875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=3.2e-16  Score=126.43  Aligned_cols=164  Identities=24%  Similarity=0.294  Sum_probs=102.2

Q ss_pred             CCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCC
Q 044980           95 NLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLK  174 (313)
Q Consensus        95 ~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~  174 (313)
                      .+..|++|++++|.+    ..++.+..+++|++|++++|.+++..+  +..+++|++|++++|+++ .+| .+..+++|+
T Consensus        44 ~L~~L~~L~l~~~~i----~~l~~l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~  115 (210)
T d1h6ta2          44 ELNSIDQIIANNSDI----KSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLS-SLKDLKKLK  115 (210)
T ss_dssp             HHHTCCEEECTTSCC----CCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGG-GGTTCTTCC
T ss_pred             HhcCccEEECcCCCC----CCchhHhhCCCCCEEeCCCccccCccc--cccCcccccccccccccc-ccc-ccccccccc
Confidence            345666666666664    223345566667777777776665432  456666777777777666 333 356666777


Q ss_pred             EEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCc
Q 044980          175 QIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYAL  254 (313)
Q Consensus       175 ~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L  254 (313)
                      .|++++|.+.. + ..+..++.++.  +++++|  .+..  +..+..+++|+.+++++|.+.+..  .+..++     +|
T Consensus       116 ~L~l~~~~~~~-~-~~l~~l~~l~~--l~~~~n--~l~~--~~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~-----~L  180 (210)
T d1h6ta2         116 SLSLEHNGISD-I-NGLVHLPQLES--LYLGNN--KITD--ITVLSRLTKLDTLSLEDNQISDIV--PLAGLT-----KL  180 (210)
T ss_dssp             EEECTTSCCCC-C-GGGGGCTTCCE--EECCSS--CCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCT-----TC
T ss_pred             ccccccccccc-c-ccccccccccc--cccccc--cccc--cccccccccccccccccccccccc--cccCCC-----CC
Confidence            77777766542 2 24566666666  666665  3222  234556677778888877777532  255565     78


Q ss_pred             cEEEccccccccc--ccCCCCCCEEEccC
Q 044980          255 VSLILSHCQISAA--LGKLSSLRNLDFSL  281 (313)
Q Consensus       255 ~~L~Ls~n~l~~~--~~~~~~L~~L~l~~  281 (313)
                      +.|++++|++++.  +..+++|++|+|++
T Consensus       181 ~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         181 QNLYLSKNHISDLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             CEEECCSSCCCBCGGGTTCTTCSEEEEEE
T ss_pred             CEEECCCCCCCCChhhcCCCCCCEEEccC
Confidence            8888888877665  67777888887763

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=1.1e-16  Score=127.38  Aligned_cols=129  Identities=19%  Similarity=0.149  Sum_probs=61.7

Q ss_pred             ecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCc
Q 044980           78 SDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYN  157 (313)
Q Consensus        78 L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  157 (313)
                      ++.++++++ .+|..+.  +++++|+|++|.++.. .....|.++++|++|++++|.+....+..+..+++|++|++++|
T Consensus        13 v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~-~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          13 VDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRI-SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSB-CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCccc-ccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            334445544 3444332  3555555555554100 01113444555555555555555444444444555555555555


Q ss_pred             ccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCC
Q 044980          158 QFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQ  237 (313)
Q Consensus       158 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  237 (313)
                      ++++..+..|.++++|++|+|++|.+++                            +.++.|..+++|+++++++|.+..
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~----------------------------i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISC----------------------------VMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCE----------------------------ECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccccCHHHHhCCCcccccccCCccccc----------------------------cCHHHhcCCccccccccccccccc
Confidence            5554334444445555555555554443                            334444555566666666666654


Q ss_pred             C
Q 044980          238 D  238 (313)
Q Consensus       238 ~  238 (313)
                      .
T Consensus       141 ~  141 (192)
T d1w8aa_         141 N  141 (192)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.1e-16  Score=132.01  Aligned_cols=195  Identities=16%  Similarity=0.105  Sum_probs=117.3

Q ss_pred             CCCcEeeccCCCCCCCCCCch--hhccCCCCCEEEcCCccCCCCCc-hhhhhcCccCeeeccC-cccCcCCCCCCCCCCC
Q 044980           97 SNLQYLDLSWIDCRLHVDSLS--WLSSLLLLEHIDLGQVHLGKASD-CWIYSLRHLFFIVLSY-NQFQGKIPSTLGNLTS  172 (313)
Q Consensus        97 ~~L~~L~L~~n~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~  172 (313)
                      +++++|++++|.+    ..++  +|.++++|++|++++|.+...++ ..+..+++++++.+.. |.+....+..|.++++
T Consensus        29 ~~l~~L~Ls~n~i----~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~  104 (242)
T d1xwdc1          29 RNAIELRFVLTKL----RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPN  104 (242)
T ss_dssp             SCCSEEEEESCCC----CEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTT
T ss_pred             CCCCEEECcCCcC----CccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccc
Confidence            3567777777765    2222  46667777777777776655332 2456667777776543 4555555666777777


Q ss_pred             CCEEEccCCCCCCCCc-hhhhcCcccccccccccccccccccccccccccC-CCcCEEEccCCCCCCCcchhhhhhcccc
Q 044980          173 LKQIDLSHNQFNFTSP-GWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRL-CKLTSIDFSSVKLSQDISQVLDIFSAYG  250 (313)
Q Consensus       173 L~~L~l~~n~l~~~~p-~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~~~~~~  250 (313)
                      |+++++.+|.+....+ ..+..+..+..  +...++  .+...-+..+.++ ..++.+++++|.+....+. .....   
T Consensus       105 L~~l~l~~~~l~~~~~~~~~~~l~~l~~--~~~~n~--~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~-~~~~~---  176 (242)
T d1xwdc1         105 LQYLLISNTGIKHLPDVHKIHSLQKVLL--DIQDNI--NIHTIERNSFVGLSFESVILWLNKNGIQEIHNC-AFNGT---  176 (242)
T ss_dssp             CCEEEEESCCCCSCCCCTTTCBSSCEEE--EEESCT--TCCEECTTSSTTSBSSCEEEECCSSCCCEECTT-TTTTC---
T ss_pred             ccccccchhhhccccccccccccccccc--cccccc--ccccccccccccccccceeeecccccccccccc-cccch---
Confidence            8888887777653322 12222333332  222222  2333333444444 3688889988888754333 33333   


Q ss_pred             ccCccEE-Eccccccccc----ccCCCCCCEEEccCCccccccCc-cccCCCCCCEeeCCCC
Q 044980          251 TYALVSL-ILSHCQISAA----LGKLSSLRNLDFSLNMLNGSIPL-SLGQISHLEYLDLSNN  306 (313)
Q Consensus       251 ~~~L~~L-~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~ip~-~l~~l~~L~~L~l~~n  306 (313)
                        ++..+ ++++|+++..    +..+++|++|++++|+++ .+|. .|.++++|+.+++.+.
T Consensus       177 --~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         177 --QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNL  235 (242)
T ss_dssp             --CEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEEESSSEESS
T ss_pred             --hhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCcccccCcCCCC
Confidence              45444 5677777654    778899999999999998 5554 5667777777766543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=7.1e-17  Score=128.49  Aligned_cols=169  Identities=18%  Similarity=0.234  Sum_probs=112.3

Q ss_pred             CEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCC-CCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccc
Q 044980          126 EHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKI-PSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNL  204 (313)
Q Consensus       126 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l  204 (313)
                      ++++.++++++.. |..+  .+++++|+|++|.+++.+ +..|..+++|++|++++|.+....+..+..++.|++  |++
T Consensus        11 ~~v~Cs~~~L~~i-P~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~--L~L   85 (192)
T d1w8aa_          11 TTVDCTGRGLKEI-PRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE--LQL   85 (192)
T ss_dssp             TEEECTTSCCSSC-CSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE--EEC
T ss_pred             CEEEEeCCCcCcc-CCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccce--eee
Confidence            3455555555432 2211  134666666666665433 344456666666666666666666666666666666  666


Q ss_pred             cccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc--ccC-CCCCCEEEccC
Q 044980          205 VSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--LGK-LSSLRNLDFSL  281 (313)
Q Consensus       205 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--~~~-~~~L~~L~l~~  281 (313)
                      ++|  .+..+.++.|.++++|++|+|++|.+++..+..+..++     +|+.++|++|.+...  ... ...++.+.+..
T Consensus        86 s~N--~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~-----~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~  158 (192)
T d1w8aa_          86 GEN--KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN-----SLTSLNLASNPFNCNCHLAWFAEWLRKKSLNG  158 (192)
T ss_dssp             CSC--CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT-----TCCEEECTTCCBCCSGGGHHHHHHHHHHCCSG
T ss_pred             ccc--cccccCHHHHhCCCcccccccCCccccccCHHHhcCCc-----ccccccccccccccccchHHHhhhhhhhcccC
Confidence            666  55555667788889999999999999987777888888     999999999998765  111 12355566777


Q ss_pred             CccccccCccccCCCCCCEeeCCCCcCc
Q 044980          282 NMLNGSIPLSLGQISHLEYLDLSNNKFV  309 (313)
Q Consensus       282 n~l~~~ip~~l~~l~~L~~L~l~~n~l~  309 (313)
                      +.+....|..   +..++.++++.|.++
T Consensus       159 ~~~~c~~p~~---l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         159 GAARCGAPSK---VRDVQIKDLPHSEFK  183 (192)
T ss_dssp             GGCBBCSSTT---TTTSBGGGSCTTTCC
T ss_pred             CCeEeCCChh---hcCCEeeecCHhhCc
Confidence            7777666654   445677888888875

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.63  E-value=1.2e-14  Score=125.71  Aligned_cols=216  Identities=19%  Similarity=0.097  Sum_probs=124.7

Q ss_pred             CCCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccC
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLF  150 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  150 (313)
                      ..++|+.|++++|+++ .+|..   ..+|++|++++|.++    .++.+  .+.|++|++++|.+... |. +..+++|+
T Consensus        56 ~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~----~l~~l--p~~L~~L~L~~n~l~~l-p~-~~~l~~L~  123 (353)
T d1jl5a_          56 LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK----ALSDL--PPLLEYLGVSNNQLEKL-PE-LQNSSFLK  123 (353)
T ss_dssp             CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS----CCCSC--CTTCCEEECCSSCCSSC-CC-CTTCTTCC
T ss_pred             CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc----hhhhh--ccccccccccccccccc-cc-hhhhccce
Confidence            4467888888888887 45654   356888888888752    22211  13588888888888754 33 56778888


Q ss_pred             eeeccCcccCcCCC------------------CCCCCCCCCCEEEccCCCCCCCCc------------------hhhhcC
Q 044980          151 FIVLSYNQFQGKIP------------------STLGNLTSLKQIDLSHNQFNFTSP------------------GWLSKL  194 (313)
Q Consensus       151 ~L~L~~n~~~~~~~------------------~~~~~l~~L~~L~l~~n~l~~~~p------------------~~~~~l  194 (313)
                      +|+++++.+....+                  ..+..++.++.+++..|.......                  ..+..+
T Consensus       124 ~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l  203 (353)
T d1jl5a_         124 IIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNL  203 (353)
T ss_dssp             EEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTC
T ss_pred             eeccccccccccccccccccchhhccccccccccccccccceeccccccccccccccccccccccccccccccccccccc
Confidence            88888877652211                  123445566677776665432110                  012234


Q ss_pred             cccccccccccccccccccccccccccCCCcCEEEccCCCCCCCc----------------------chhhhhhc-----
Q 044980          195 NELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDI----------------------SQVLDIFS-----  247 (313)
Q Consensus       195 ~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~----------------------~~~l~~~~-----  247 (313)
                      +.++.  +.+++|.  .. .++.   ...++..+.+..+.+....                      +.......     
T Consensus       204 ~~L~~--l~l~~n~--~~-~~~~---~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  275 (353)
T d1jl5a_         204 PFLTT--IYADNNL--LK-TLPD---LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNE  275 (353)
T ss_dssp             TTCCE--EECCSSC--CS-SCCS---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSC
T ss_pred             ccccc--ccccccc--cc-cccc---ccccccccccccccccccccccccccccccccccccccccccchhcccccccCc
Confidence            45555  4444441  11 0111   1112222222222221100                      00000000     


Q ss_pred             ----cccccCccEEEcccccccccccCCCCCCEEEccCCccccccCccccCCCCCCEeeCCCCcCcc
Q 044980          248 ----AYGTYALVSLILSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       248 ----~~~~~~L~~L~Ls~n~l~~~~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~~n~l~~  310 (313)
                          ...+++|+.|++++|+++..-..+++|+.|++++|+|+ .+|..   +++|++|++++|+++.
T Consensus       276 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~~  338 (353)
T d1jl5a_         276 IRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLRE  338 (353)
T ss_dssp             CSEECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSS
T ss_pred             cccccccCCCCCEEECCCCccCccccccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCCC
Confidence                01124799999999988866556788999999999988 67753   4579999999999864

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.60  E-value=4.3e-16  Score=135.20  Aligned_cols=234  Identities=17%  Similarity=0.167  Sum_probs=165.5

Q ss_pred             CCCCcceecCCCCccccc----ccccccCCCCCcEeeccCCCCCCCCCC--------chhhccCCCCCEEEcCCccCCCC
Q 044980           71 PFGYLKYSDAEDDDHYMR----SKLVVGNLSNLQYLDLSWIDCRLHVDS--------LSWLSSLLLLEHIDLGQVHLGKA  138 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~L~~n~~~~~~~~--------~~~~~~l~~L~~L~l~~n~l~~~  138 (313)
                      ....|+.|++++|.+...    +...+...+.|+.++++++........        ...+..+++|+.|++++|.++..
T Consensus        29 ~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  108 (344)
T d2ca6a1          29 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  108 (344)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             hCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccc
Confidence            457788899999988654    334566789999999998764222211        12356788999999999999875


Q ss_pred             Cch----hhhhcCccCeeeccCcccCcCCC----C---------CCCCCCCCCEEEccCCCCCCC----CchhhhcCccc
Q 044980          139 SDC----WIYSLRHLFFIVLSYNQFQGKIP----S---------TLGNLTSLKQIDLSHNQFNFT----SPGWLSKLNEL  197 (313)
Q Consensus       139 ~~~----~~~~l~~L~~L~L~~n~~~~~~~----~---------~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L  197 (313)
                      ...    .+...++|++|++++|.+.....    .         .....+.|+.+++++|.+...    +...+.....+
T Consensus       109 ~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L  188 (344)
T d2ca6a1         109 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  188 (344)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             cccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhh
Confidence            433    44567889999999998752110    0         113467899999999988643    23345667889


Q ss_pred             cccccccccccccc---ccccccccccCCCcCEEEccCCCCCCCcch----hhhhhccccccCccEEEccccccccc---
Q 044980          198 SSFLLNLVSCMVRF---HQLIPTSFIRLCKLTSIDFSSVKLSQDISQ----VLDIFSAYGTYALVSLILSHCQISAA---  267 (313)
Q Consensus       198 ~~~~L~l~~n~~~~---~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~l~~~~~~~~~~L~~L~Ls~n~l~~~---  267 (313)
                      +.  +++++|...-   ...+...+..+++|+.|++++|.+......    .+...+     +|+.|++++|.+++.   
T Consensus       189 ~~--L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~-----~L~~L~Ls~n~i~~~g~~  261 (344)
T d2ca6a1         189 HT--VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP-----NLRELGLNDCLLSARGAA  261 (344)
T ss_dssp             CE--EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT-----TCCEEECTTCCCCHHHHH
T ss_pred             cc--cccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccc-----cchhhhhhcCccCchhhH
Confidence            99  8888882221   112455677888999999999998654333    333444     899999999999865   


Q ss_pred             -----cc--CCCCCCEEEccCCccccc----cCcccc-CCCCCCEeeCCCCcCccc
Q 044980          268 -----LG--KLSSLRNLDFSLNMLNGS----IPLSLG-QISHLEYLDLSNNKFVTK  311 (313)
Q Consensus       268 -----~~--~~~~L~~L~l~~n~l~~~----ip~~l~-~l~~L~~L~l~~n~l~~~  311 (313)
                           +.  ..+.|++|++++|++...    +...+. +.++|++|++++|++..+
T Consensus       262 ~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence                 32  346799999999998753    333342 578999999999999753

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=7.5e-16  Score=126.87  Aligned_cols=213  Identities=15%  Similarity=0.082  Sum_probs=146.3

Q ss_pred             cccCceEecCCCCCEEEEecCCC-CCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch--hhccCCCC
Q 044980           49 CKWVGNFCNNLTGHILELNLENP-FGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS--WLSSLLLL  125 (313)
Q Consensus        49 c~~~~v~c~~~~~~v~~l~l~~~-l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~--~~~~l~~L  125 (313)
                      |....+.|....  ++.+  ... .++++.|++++|.++..-+.+|.++++|++|++++|.+   ...++  .|..++.+
T Consensus         8 C~~~~i~c~~~~--l~~i--P~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~---~~~i~~~~f~~l~~l   80 (242)
T d1xwdc1           8 CSNRVFLCQESK--VTEI--PSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV---LEVIEADVFSNLPKL   80 (242)
T ss_dssp             ECSSEEEEESCS--CSSC--CSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTT---CCEECSSSEESCTTC
T ss_pred             CcCCEEEEeCCC--CCCc--CCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccc---cceeecccccccccc
Confidence            677778886422  2222  122 24799999999999865555789999999999999985   23233  57889999


Q ss_pred             CEEEcC-CccCCCCCchhhhhcCccCeeeccCcccCcCCCC-CCCCCCCCCEEEccCCCCCCCCchhhhcCc-ccccccc
Q 044980          126 EHIDLG-QVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPS-TLGNLTSLKQIDLSHNQFNFTSPGWLSKLN-ELSSFLL  202 (313)
Q Consensus       126 ~~L~l~-~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~-~L~~~~L  202 (313)
                      +++.+. .|.+....+..+..+++|+++++++|.+....+. .+..+..+..+...++.+....+..+..++ .++.  +
T Consensus        81 ~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~--L  158 (242)
T d1xwdc1          81 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI--L  158 (242)
T ss_dssp             CEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEE--E
T ss_pred             ccccccccccccccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccccccee--e
Confidence            999875 4677776677788999999999999998743222 233455666666677777654445555553 6777  7


Q ss_pred             cccccccccccccccccccCCCcCEE-EccCCCCCCCcchhhhhhccccccCccEEEccccccccc-ccCCCCCCEEE
Q 044980          203 NLVSCMVRFHQLIPTSFIRLCKLTSI-DFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA-LGKLSSLRNLD  278 (313)
Q Consensus       203 ~l~~n~~~~~~~~~~~~~~~~~L~~L-~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~L~~L~  278 (313)
                      .+.+|  .+... +.......+++.+ .+++|.++...+..+..++     +|+.|++++|+++.. ...+.++..|.
T Consensus       159 ~l~~n--~l~~i-~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~-----~L~~L~Ls~N~l~~l~~~~~~~l~~L~  228 (242)
T d1xwdc1         159 WLNKN--GIQEI-HNCAFNGTQLDELNLSDNNNLEELPNDVFHGAS-----GPVILDISRTRIHSLPSYGLENLKKLR  228 (242)
T ss_dssp             ECCSS--CCCEE-CTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSC-----CCSEEECTTSCCCCCCSSSCTTCCEEE
T ss_pred             ecccc--ccccc-ccccccchhhhccccccccccccccHHHhcCCC-----CCCEEECCCCcCCccCHHHHcCCcccc
Confidence            77777  55543 3334445555555 5677888865555677777     999999999999865 22344444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.3e-15  Score=128.53  Aligned_cols=179  Identities=23%  Similarity=0.221  Sum_probs=108.2

Q ss_pred             CCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCc-ccCcC-CCCCCCCCC
Q 044980           95 NLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYN-QFQGK-IPSTLGNLT  171 (313)
Q Consensus        95 ~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~~~~~-~~~~~~~l~  171 (313)
                      ....|++|+++++.+  ....++ .+..+++|++|+++++.+++..+..+..+++|++|+++++ .++.. +......++
T Consensus        44 ~~~~L~~LdLs~~~i--~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~  121 (284)
T d2astb2          44 SPFRVQHMDLSNSVI--EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS  121 (284)
T ss_dssp             CCBCCCEEECTTCEE--CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             cCCCCCEEECCCCcc--CHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHH
Confidence            345778888877764  222233 3566778888888888777666666777777888888775 34311 112224567


Q ss_pred             CCCEEEccCCC-CCCC-Cchhhhc-Cccccccccccccccccccc-ccccccccCCCcCEEEccCCC-CCCCcchhhhhh
Q 044980          172 SLKQIDLSHNQ-FNFT-SPGWLSK-LNELSSFLLNLVSCMVRFHQ-LIPTSFIRLCKLTSIDFSSVK-LSQDISQVLDIF  246 (313)
Q Consensus       172 ~L~~L~l~~n~-l~~~-~p~~~~~-l~~L~~~~L~l~~n~~~~~~-~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~  246 (313)
                      +|++|++++|. ++.. +...+.. .+.|+.  ++++++...+.. .+.....++++|++|++++|. +++..+..+..+
T Consensus       122 ~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~--L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~  199 (284)
T d2astb2         122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQ--LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL  199 (284)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCE--EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred             hccccccccccccccccchhhhcccccccch--hhhcccccccccccccccccccccccccccccccCCCchhhhhhccc
Confidence            78888887764 3321 1222333 356777  666654222221 133334556778888887753 555555666666


Q ss_pred             ccccccCccEEEcccc-ccccc----ccCCCCCCEEEccCC
Q 044980          247 SAYGTYALVSLILSHC-QISAA----LGKLSSLRNLDFSLN  282 (313)
Q Consensus       247 ~~~~~~~L~~L~Ls~n-~l~~~----~~~~~~L~~L~l~~n  282 (313)
                      +     +|++|++++| .+++.    ++++++|+.|+++++
T Consensus       200 ~-----~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         200 N-----YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             T-----TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             C-----cCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            6     7888888775 45544    566777888888776

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.56  E-value=1.2e-13  Score=119.22  Aligned_cols=209  Identities=22%  Similarity=0.182  Sum_probs=135.6

Q ss_pred             CCCCcceecCCCCcccccccccccCC-CCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCc---------
Q 044980           71 PFGYLKYSDAEDDDHYMRSKLVVGNL-SNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASD---------  140 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------  140 (313)
                      .+++|+.|++++|.++. ++    .+ +.|++|++++|.+    ..+|.+..+++|++++++++.+.....         
T Consensus        76 ~~~~L~~L~l~~n~l~~-l~----~lp~~L~~L~L~~n~l----~~lp~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~  146 (353)
T d1jl5a_          76 LPQSLKSLLVDNNNLKA-LS----DLPPLLEYLGVSNNQL----EKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIA  146 (353)
T ss_dssp             CCTTCCEEECCSSCCSC-CC----SCCTTCCEEECCSSCC----SSCCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEE
T ss_pred             chhhhhhhhhhhcccch-hh----hhcccccccccccccc----ccccchhhhccceeeccccccccccccccccccchh
Confidence            45789999999998873 22    23 4699999999996    345667789999999999887654321         


Q ss_pred             ---------hhhhhcCccCeeeccCcccCcC------------------CCCCCCCCCCCCEEEccCCCCCCCCchhhhc
Q 044980          141 ---------CWIYSLRHLFFIVLSYNQFQGK------------------IPSTLGNLTSLKQIDLSHNQFNFTSPGWLSK  193 (313)
Q Consensus       141 ---------~~~~~l~~L~~L~L~~n~~~~~------------------~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~  193 (313)
                               ..+..++.++.+.+..|.+...                  ....+..++.|+.+++++|.... .+.....
T Consensus       147 ~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~  225 (353)
T d1jl5a_         147 AGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPDLPPS  225 (353)
T ss_dssp             CCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCSCCTT
T ss_pred             hccccccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence                     1234455578888887765421                  11234567889999999987653 2222221


Q ss_pred             Cc-----------------cccccccccccc-ccccc-------------cccccccccCCCcCEEEccCCCCCCCcchh
Q 044980          194 LN-----------------ELSSFLLNLVSC-MVRFH-------------QLIPTSFIRLCKLTSIDFSSVKLSQDISQV  242 (313)
Q Consensus       194 l~-----------------~L~~~~L~l~~n-~~~~~-------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  242 (313)
                      +.                 .+..  ..+..+ ...+.             ..++.....+++|++|++++|++.. +|..
T Consensus       226 l~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~  302 (353)
T d1jl5a_         226 LEALNVRDNYLTDLPELPQSLTF--LDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL  302 (353)
T ss_dssp             CCEEECCSSCCSCCCCCCTTCCE--EECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC
T ss_pred             ccccccccccccccccccccccc--cccccccccccccccchhcccccccCccccccccCCCCCEEECCCCccCc-cccc
Confidence            11                 1111  111111 00000             0122222345789999999999984 4532


Q ss_pred             hhhhccccccCccEEEcccccccccccCCCCCCEEEccCCccccccCccccCCCCCCEeeCC
Q 044980          243 LDIFSAYGTYALVSLILSHCQISAALGKLSSLRNLDFSLNMLNGSIPLSLGQISHLEYLDLS  304 (313)
Q Consensus       243 l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~L~~L~l~~n~l~~~ip~~l~~l~~L~~L~l~  304 (313)
                         ++     +|+.|++++|+++..-..+++|++|++++|+++ .+|..   ...|++|.+.
T Consensus       303 ---~~-----~L~~L~L~~N~L~~l~~~~~~L~~L~L~~N~L~-~lp~~---~~~L~~L~~~  352 (353)
T d1jl5a_         303 ---PP-----RLERLIASFNHLAEVPELPQNLKQLHVEYNPLR-EFPDI---PESVEDLRMN  352 (353)
T ss_dssp             ---CT-----TCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCCC---CTTCCEEECC
T ss_pred             ---cC-----CCCEEECCCCcCCccccccCCCCEEECcCCcCC-CCCcc---ccccCeeECc
Confidence               34     899999999999876445678999999999998 78863   2357777664

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.8e-15  Score=125.65  Aligned_cols=211  Identities=15%  Similarity=0.131  Sum_probs=137.5

Q ss_pred             CCCCcceecCCCCccccc-ccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCc-cCCCCC-chhhhhcC
Q 044980           71 PFGYLKYSDAEDDDHYMR-SKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQV-HLGKAS-DCWIYSLR  147 (313)
Q Consensus        71 ~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~  147 (313)
                      ....|++|+++++.+... ++..+.++++|++|++.++.+  ....+..+.++++|++|+++++ .++... ......++
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l--~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~  121 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL--SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS  121 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBC--CHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCC--CcHHHHHHhcCCCCcCccccccccccccccchhhHHHH
Confidence            445788888888877654 344467888999999988874  2223346778889999999885 455322 22245678


Q ss_pred             ccCeeeccCcc-cCcC-CCCCCC-CCCCCCEEEccCCC--CCCC-CchhhhcCccccccccccccccccccccccccccc
Q 044980          148 HLFFIVLSYNQ-FQGK-IPSTLG-NLTSLKQIDLSHNQ--FNFT-SPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIR  221 (313)
Q Consensus       148 ~L~~L~L~~n~-~~~~-~~~~~~-~l~~L~~L~l~~n~--l~~~-~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~  221 (313)
                      +|++|+++++. ++.. +...+. ..++|+.|+++++.  ++.. +......+++|++  |++++|. .+....+..+..
T Consensus       122 ~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~--L~L~~~~-~itd~~~~~l~~  198 (284)
T d2astb2         122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH--LDLSDSV-MLKNDCFQEFFQ  198 (284)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSE--EECTTCT-TCCGGGGGGGGG
T ss_pred             hccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccc--ccccccc-CCCchhhhhhcc
Confidence            89999998863 3311 111122 24678999988763  3322 2333456788888  8887752 344455667778


Q ss_pred             CCCcCEEEccCC-CCCCCcchhhhhhccccccCccEEEccccccccc-----ccCCCCCCEEEccCCccccccCccccCC
Q 044980          222 LCKLTSIDFSSV-KLSQDISQVLDIFSAYGTYALVSLILSHCQISAA-----LGKLSSLRNLDFSLNMLNGSIPLSLGQI  295 (313)
Q Consensus       222 ~~~L~~L~l~~n-~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~-----~~~~~~L~~L~l~~n~l~~~ip~~l~~l  295 (313)
                      +++|++|++++| .+++.....+..++     +|+.|+++++ +++.     ...+++|   ++..+++++..++.++..
T Consensus       199 ~~~L~~L~L~~C~~i~~~~l~~L~~~~-----~L~~L~l~~~-~~d~~l~~l~~~lp~L---~i~~~~ls~~~~~~~~~~  269 (284)
T d2astb2         199 LNYLQHLSLSRCYDIIPETLLELGEIP-----TLKTLQVFGI-VPDGTLQLLKEALPHL---QINCSHFTTIARPTIGNK  269 (284)
T ss_dssp             CTTCCEEECTTCTTCCGGGGGGGGGCT-----TCCEEECTTS-SCTTCHHHHHHHSTTS---EESCCCSCCTTCSSCSST
T ss_pred             cCcCCEEECCCCCCCChHHHHHHhcCC-----CCCEEeeeCC-CCHHHHHHHHHhCccc---cccCccCCCCCCCccCcc
Confidence            888999999885 56666555666666     8999999887 4443     2334554   456777776556555543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.8e-14  Score=109.88  Aligned_cols=107  Identities=15%  Similarity=0.099  Sum_probs=64.0

Q ss_pred             CCCcceecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCe
Q 044980           72 FGYLKYSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFF  151 (313)
Q Consensus        72 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  151 (313)
                      ...++.|++++|+++.. +..+..+++|++|+|++|.+    ..++.+..+++|++|++++|.++...+..+..+++|++
T Consensus        17 ~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i----~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEI----RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             TTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCC----CEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCC----CccCCcccCcchhhhhcccccccCCCcccccccccccc
Confidence            34566666666666543 44445566677777776665    22344566666677777776666554444556666666


Q ss_pred             eeccCcccCcCCC--CCCCCCCCCCEEEccCCCCC
Q 044980          152 IVLSYNQFQGKIP--STLGNLTSLKQIDLSHNQFN  184 (313)
Q Consensus       152 L~L~~n~~~~~~~--~~~~~l~~L~~L~l~~n~l~  184 (313)
                      |++++|.++. ++  ..+..+++|+++++++|.++
T Consensus        92 L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          92 LILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             EECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ceeccccccc-cccccccccccccchhhcCCCccc
Confidence            6666666652 22  23555666666666666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3e-15  Score=133.87  Aligned_cols=87  Identities=26%  Similarity=0.226  Sum_probs=52.5

Q ss_pred             CCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc--------c-cCCCCCCEEEccCCcccc----ccC
Q 044980          223 CKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--------L-GKLSSLRNLDFSLNMLNG----SIP  289 (313)
Q Consensus       223 ~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--------~-~~~~~L~~L~l~~n~l~~----~ip  289 (313)
                      ..|+.+++++|.+.......+..+.. ..++|+.|+|++|++++.        + ...+.|++|++++|.+++    .++
T Consensus       312 ~~L~~l~l~~~~l~~~~~~~l~~~~~-~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~  390 (460)
T d1z7xw1         312 CQLESLWVKSCSFTAACCSHFSSVLA-QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA  390 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHH-HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred             cccccccccccchhhhhhhhcccccc-cccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHH
Confidence            45677777777666544333332221 122677777777777643        2 234567777887777764    234


Q ss_pred             ccccCCCCCCEeeCCCCcCcc
Q 044980          290 LSLGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       290 ~~l~~l~~L~~L~l~~n~l~~  310 (313)
                      ..+...++|++|++++|+|+.
T Consensus       391 ~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         391 ATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             HHHHHCCCCCEEECCSSSCCH
T ss_pred             HHHhcCCCCCEEECCCCcCCH
Confidence            445556777778887777753

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.8e-14  Score=109.08  Aligned_cols=122  Identities=18%  Similarity=0.168  Sum_probs=76.2

Q ss_pred             hcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccccccccccccccccccccccCCC
Q 044980          145 SLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCK  224 (313)
Q Consensus       145 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~  224 (313)
                      +..++++|+|++|+++ .++..+..+++|+.|++++|.+.. +                             +.+..+++
T Consensus        16 n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l-----------------------------~~~~~l~~   64 (162)
T d1a9na_          16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-L-----------------------------DGFPLLRR   64 (162)
T ss_dssp             CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-E-----------------------------CCCCCCSS
T ss_pred             CcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-c-----------------------------CCcccCcc
Confidence            3344566666666665 344444455566666666665542 1                             12444566


Q ss_pred             cCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc-----ccCCCCCCEEEccCCccccccCc----cccCC
Q 044980          225 LTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA-----LGKLSSLRNLDFSLNMLNGSIPL----SLGQI  295 (313)
Q Consensus       225 L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~-----~~~~~~L~~L~l~~n~l~~~ip~----~l~~l  295 (313)
                      |++|++++|.+....+..+..++     +|+.|++++|++...     +..+++|++|++++|.++ ..|.    .+..+
T Consensus        65 L~~L~ls~N~i~~l~~~~~~~l~-----~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~l  138 (162)
T d1a9na_          65 LKTLLVNNNRICRIGEGLDQALP-----DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKV  138 (162)
T ss_dssp             CCEEECCSSCCCEECSCHHHHCT-----TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHC
T ss_pred             hhhhhcccccccCCCcccccccc-----ccccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHC
Confidence            77777777777654444455566     777777777776543     566788888888888887 4443    46678


Q ss_pred             CCCCEeeC
Q 044980          296 SHLEYLDL  303 (313)
Q Consensus       296 ~~L~~L~l  303 (313)
                      |+|++||-
T Consensus       139 p~L~~LD~  146 (162)
T d1a9na_         139 PQVRVLDF  146 (162)
T ss_dssp             TTCSEETT
T ss_pred             CCcCeeCC
Confidence            88888873

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=3.3e-13  Score=98.87  Aligned_cols=55  Identities=22%  Similarity=0.315  Sum_probs=29.7

Q ss_pred             EEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCC
Q 044980          127 HIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFN  184 (313)
Q Consensus       127 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (313)
                      +|++++|.++...  .+..+.+|++|++++|+++ .+|..+..+++|+.|++++|.++
T Consensus         2 ~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~   56 (124)
T d1dcea3           2 VLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE   56 (124)
T ss_dssp             EEECTTSCCSSCC--CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred             EEEcCCCCCCCCc--ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc
Confidence            4555666555332  1455555555555555555 44545555555555555555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=4.5e-13  Score=98.11  Aligned_cols=100  Identities=22%  Similarity=0.170  Sum_probs=52.0

Q ss_pred             eecCCCCcccccccccccCCCCCcEeeccCCCCCCCCCCch-hhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeecc
Q 044980           77 YSDAEDDDHYMRSKLVVGNLSNLQYLDLSWIDCRLHVDSLS-WLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLS  155 (313)
Q Consensus        77 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  155 (313)
                      .|++++|+++. ++ .+.++++|++|++++|.+    ..+| .+..+++|++|++++|.++.. | .+..+++|++|+++
T Consensus         2 ~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l----~~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~   73 (124)
T d1dcea3           2 VLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRL----RALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLC   73 (124)
T ss_dssp             EEECTTSCCSS-CC-CGGGGTTCCEEECCSSCC----CCCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECC
T ss_pred             EEEcCCCCCCC-Cc-ccccCCCCCEEECCCCcc----Ccchhhhhhhhccccccccccccccc-C-ccccccccCeEECC
Confidence            45566666652 22 255566666666666654    1222 455555666666666655543 2 25555555555555


Q ss_pred             CcccCcCC-CCCCCCCCCCCEEEccCCCCC
Q 044980          156 YNQFQGKI-PSTLGNLTSLKQIDLSHNQFN  184 (313)
Q Consensus       156 ~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~  184 (313)
                      +|+++... ...+..+++|+++++++|.++
T Consensus        74 ~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          74 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            55555221 123445555555555555543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=7.5e-15  Score=131.23  Aligned_cols=58  Identities=31%  Similarity=0.316  Sum_probs=42.5

Q ss_pred             CccEEEccccccccc--------ccCCCCCCEEEccCCccccc----cCcccc-CCCCCCEeeCCCCcCcc
Q 044980          253 ALVSLILSHCQISAA--------LGKLSSLRNLDFSLNMLNGS----IPLSLG-QISHLEYLDLSNNKFVT  310 (313)
Q Consensus       253 ~L~~L~Ls~n~l~~~--------~~~~~~L~~L~l~~n~l~~~----ip~~l~-~l~~L~~L~l~~n~l~~  310 (313)
                      .|+.+++++|.++..        +...++|++|+|++|++.+.    ++..+. ..+.|++|++++|.|+.
T Consensus       313 ~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~  383 (460)
T d1z7xw1         313 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  383 (460)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             ccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCCh
Confidence            678888888877654        34456899999999998753    333343 35679999999999874

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.40  E-value=4.1e-14  Score=122.47  Aligned_cols=217  Identities=16%  Similarity=0.073  Sum_probs=146.2

Q ss_pred             ccccccCCCCCcEeeccCCCCCCCCCCch----hhccCCCCCEEEcCCccCCCCC---c-------hhhhhcCccCeeec
Q 044980           89 SKLVVGNLSNLQYLDLSWIDCRLHVDSLS----WLSSLLLLEHIDLGQVHLGKAS---D-------CWIYSLRHLFFIVL  154 (313)
Q Consensus        89 ~~~~l~~l~~L~~L~L~~n~~~~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~---~-------~~~~~l~~L~~L~L  154 (313)
                      +...+.+...|++|+|++|.+  ......    .+...+.|+.++++++......   +       ..+...++|++|++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i--~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L  100 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTI--GTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  100 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEE--CHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHhhCCCCCEEECcCCcC--CHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccc
Confidence            344567789999999999985  221111    4667799999999987654321   2       22445677999999


Q ss_pred             cCcccCcC----CCCCCCCCCCCCEEEccCCCCCCCCchh-------------hhcCccccccccccccccccc--cccc
Q 044980          155 SYNQFQGK----IPSTLGNLTSLKQIDLSHNQFNFTSPGW-------------LSKLNELSSFLLNLVSCMVRF--HQLI  215 (313)
Q Consensus       155 ~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~-------------~~~l~~L~~~~L~l~~n~~~~--~~~~  215 (313)
                      ++|.++..    +...+...++|++|++++|.+.......             ....+.|+.  +.+++|...-  ...+
T Consensus       101 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~--l~l~~n~i~~~~~~~l  178 (344)
T d2ca6a1         101 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRS--IICGRNRLENGSMKEW  178 (344)
T ss_dssp             CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCE--EECCSSCCTGGGHHHH
T ss_pred             cccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccce--eecccccccccccccc
Confidence            99988743    2233456789999999999875221111             123456777  7777662111  1124


Q ss_pred             ccccccCCCcCEEEccCCCCCCCcch-hhhhhccccccCccEEEccccccccc--------ccCCCCCCEEEccCCcccc
Q 044980          216 PTSFIRLCKLTSIDFSSVKLSQDISQ-VLDIFSAYGTYALVSLILSHCQISAA--------LGKLSSLRNLDFSLNMLNG  286 (313)
Q Consensus       216 ~~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~~~~~~~~~L~~L~Ls~n~l~~~--------~~~~~~L~~L~l~~n~l~~  286 (313)
                      ...+.....++.|++++|.+...... .+.... ..+++|+.|++++|.++..        +..+++|++|++++|.+++
T Consensus       179 ~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l-~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~  257 (344)
T d2ca6a1         179 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL-AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  257 (344)
T ss_dssp             HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTG-GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             cchhhhhhhhcccccccccccccccccchhhhh-cchhhhcccccccccccccccccccccccccccchhhhhhcCccCc
Confidence            55567778999999999998753211 111111 1233899999999998653        6788999999999999986


Q ss_pred             ccCc----cccC--CCCCCEeeCCCCcCcc
Q 044980          287 SIPL----SLGQ--ISHLEYLDLSNNKFVT  310 (313)
Q Consensus       287 ~ip~----~l~~--l~~L~~L~l~~n~l~~  310 (313)
                      ....    .+..  .+.|++|++++|+++.
T Consensus       258 ~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         258 RGAAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             HHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             hhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence            4333    3332  4679999999999864

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.30  E-value=9.6e-14  Score=110.45  Aligned_cols=146  Identities=19%  Similarity=0.205  Sum_probs=88.0

Q ss_pred             CCEEEcCCcc-CCCCCchhhhhcCccCeeeccCcccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCccccccccc
Q 044980          125 LEHIDLGQVH-LGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLLN  203 (313)
Q Consensus       125 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L~  203 (313)
                      ++.+++.+.. -....+..+..+++|++|++++|.++ .++ .+..+++|++|++++|.++ .+|.....          
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~----------   91 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAV----------   91 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHH----------
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccc----------
Confidence            4445554331 11233456777777777777777776 443 3666777777777777665 23322222          


Q ss_pred             ccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc-----ccCCCCCCEEE
Q 044980          204 LVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA-----LGKLSSLRNLD  278 (313)
Q Consensus       204 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~-----~~~~~~L~~L~  278 (313)
                                        +.+|+.|++++|.++..  +.+..++     +|+.|++++|+++..     +..+++|+.|+
T Consensus        92 ------------------~~~L~~L~l~~N~i~~l--~~~~~l~-----~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~  146 (198)
T d1m9la_          92 ------------------ADTLEELWISYNQIASL--SGIEKLV-----NLRVLYMSNNKITNWGEIDKLAALDKLEDLL  146 (198)
T ss_dssp             ------------------HHHCCEEECSEEECCCH--HHHHHHH-----HSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred             ------------------ccccccccccccccccc--ccccccc-----cccccccccchhccccccccccCCCccceee
Confidence                              23466666666666642  2355555     777777777777653     56777888888


Q ss_pred             ccCCccccccCcc----------ccCCCCCCEeeCCCCcCcc
Q 044980          279 FSLNMLNGSIPLS----------LGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       279 l~~n~l~~~ip~~----------l~~l~~L~~L~l~~n~l~~  310 (313)
                      +++|.+....+..          +..+|+|+.||  +..++.
T Consensus       147 L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~~  186 (198)
T d1m9la_         147 LAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             ECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGTT
T ss_pred             cCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCCH
Confidence            8888776433321          45678888876  445544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.15  E-value=2.8e-12  Score=101.83  Aligned_cols=112  Identities=24%  Similarity=0.256  Sum_probs=90.1

Q ss_pred             CCchhhhcCcccccccccccccccccccccccccccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccc
Q 044980          186 TSPGWLSKLNELSSFLLNLVSCMVRFHQLIPTSFIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQIS  265 (313)
Q Consensus       186 ~~p~~~~~l~~L~~~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~  265 (313)
                      .++..+..+++|+.  |++++|  .+.. ++ .+..+++|+.|++++|.+.. ++......+     +|+.|++++|+++
T Consensus        39 ~l~~sl~~L~~L~~--L~Ls~n--~I~~-i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~-----~L~~L~l~~N~i~  106 (198)
T d1m9la_          39 KMDATLSTLKACKH--LALSTN--NIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVAD-----TLEELWISYNQIA  106 (198)
T ss_dssp             CCHHHHHHTTTCCE--EECSEE--EESC-CC-CHHHHTTCCEEECCEEEECS-CSSHHHHHH-----HCCEEECSEEECC
T ss_pred             hhhhHHhcccccce--eECccc--CCCC-cc-cccCCccccChhhccccccc-ccccccccc-----ccccccccccccc
Confidence            45667788888888  888887  4443 33 47788899999999999874 455555556     7999999999998


Q ss_pred             cc--ccCCCCCCEEEccCCccccccC--ccccCCCCCCEeeCCCCcCcc
Q 044980          266 AA--LGKLSSLRNLDFSLNMLNGSIP--LSLGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       266 ~~--~~~~~~L~~L~l~~n~l~~~ip--~~l~~l~~L~~L~l~~n~l~~  310 (313)
                      ..  +..+++|+.|++++|+++ .++  ..+..+++|++|++++|+++.
T Consensus       107 ~l~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         107 SLSGIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             CHHHHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             ccccccccccccccccccchhc-cccccccccCCCccceeecCCCcccc
Confidence            76  778899999999999998 444  468899999999999998754

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.9e-10  Score=87.35  Aligned_cols=93  Identities=19%  Similarity=0.065  Sum_probs=74.3

Q ss_pred             ccccccCCCCCcEeeccCCC-CCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccCcCCCCCC
Q 044980           89 SKLVVGNLSNLQYLDLSWID-CRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQGKIPSTL  167 (313)
Q Consensus        89 ~~~~l~~l~~L~~L~L~~n~-~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~  167 (313)
                      +|..+..+++|++|++.+|+ +  ......+|.++++|+.|++++|+++...+..+..+++|++|+|++|+++ .+|...
T Consensus        23 ~p~~l~~l~~l~~L~l~~n~~l--~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~   99 (156)
T d2ifga3          23 SLHHLPGAENLTELYIENQQHL--QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKT   99 (156)
T ss_dssp             TTTTSCSCSCCSEEECCSCSSC--CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTT
T ss_pred             CcccccCccccCeeecCCCccc--cccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhh
Confidence            46667778899999997664 4  1112236888999999999999998887888999999999999999998 666655


Q ss_pred             CCCCCCCEEEccCCCCC
Q 044980          168 GNLTSLKQIDLSHNQFN  184 (313)
Q Consensus       168 ~~l~~L~~L~l~~n~l~  184 (313)
                      ....+|+.|++++|.+.
T Consensus       100 ~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3         100 VQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             TCSCCCCEEECCSSCCC
T ss_pred             hccccccccccCCCccc
Confidence            55567999999999875

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=8e-11  Score=89.46  Aligned_cols=81  Identities=15%  Similarity=0.090  Sum_probs=36.8

Q ss_pred             CCCEEEcCCccCCCCCchhhhhcCccCeeeccCc-ccCcCCCCCCCCCCCCCEEEccCCCCCCCCchhhhcCcccccccc
Q 044980          124 LLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYN-QFQGKIPSTLGNLTSLKQIDLSHNQFNFTSPGWLSKLNELSSFLL  202 (313)
Q Consensus       124 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~~~L  202 (313)
                      ..+.++.+++.+... |..+..+++|++|++.+| .++...+..|.++++|+.|++++|+++...+..|..+++|+.  |
T Consensus         9 ~~~~l~c~~~~~~~~-p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~--L   85 (156)
T d2ifga3           9 GSSGLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR--L   85 (156)
T ss_dssp             SSSCEECCSSCCCTT-TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE--E
T ss_pred             CCCeEEecCCCCccC-cccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc--e
Confidence            344455555544432 223444445555555433 244333334555555555555555554433344444444444  4


Q ss_pred             ccccc
Q 044980          203 NLVSC  207 (313)
Q Consensus       203 ~l~~n  207 (313)
                      ++++|
T Consensus        86 ~Ls~N   90 (156)
T d2ifga3          86 NLSFN   90 (156)
T ss_dssp             ECCSS
T ss_pred             eccCC
Confidence            44444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=8.8e-08  Score=72.66  Aligned_cols=67  Identities=19%  Similarity=0.017  Sum_probs=31.8

Q ss_pred             cCCCCCcEeeccCCCCCCCCCCchhhccCCCCCEEEcCCccCCCCCchhhhhcCccCeeeccCcccC
Q 044980           94 GNLSNLQYLDLSWIDCRLHVDSLSWLSSLLLLEHIDLGQVHLGKASDCWIYSLRHLFFIVLSYNQFQ  160 (313)
Q Consensus        94 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~  160 (313)
                      .+++.|++|+|++|.++........+..+++|+.|++++|.+....+-.+....+|+++++++|++.
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            3455666666666664221111112344555556666665555433222223334555555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=4.8e-08  Score=74.15  Aligned_cols=89  Identities=19%  Similarity=0.127  Sum_probs=61.6

Q ss_pred             cccccccCCCcCEEEccCCCCCCC--cchhhhhhccccccCccEEEccccccccc----ccCCCCCCEEEccCCcccccc
Q 044980          215 IPTSFIRLCKLTSIDFSSVKLSQD--ISQVLDIFSAYGTYALVSLILSHCQISAA----LGKLSSLRNLDFSLNMLNGSI  288 (313)
Q Consensus       215 ~~~~~~~~~~L~~L~l~~n~l~~~--~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~L~~L~l~~n~l~~~i  288 (313)
                      ++.....+++|++|++++|+++..  ++..+..++     +|+.|++++|.++..    .....+|++|++++|.+.+..
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~-----~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~  131 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAP-----NLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTF  131 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHST-----TCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSS
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCC-----cccccccccCccccchhhhhhhccccceeecCCCCcCcCc
Confidence            333445677888888999888763  234556666     888999999988765    233456888999999887544


Q ss_pred             Cc-------cccCCCCCCEeeCCCCcCcc
Q 044980          289 PL-------SLGQISHLEYLDLSNNKFVT  310 (313)
Q Consensus       289 p~-------~l~~l~~L~~L~l~~n~l~~  310 (313)
                      ..       .+..+|+|+.||  |..+..
T Consensus       132 ~~~~~y~~~i~~~~P~L~~LD--g~~v~p  158 (162)
T d1koha1         132 RDQSTYISAIRERFPKLLRLD--GHELPP  158 (162)
T ss_dssp             SSHHHHHHHHHTTSTTCCEET--TEECCC
T ss_pred             ccchhHHHHHHHHCCCCCEEC--cCCCcC
Confidence            32       245688888886  444443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.78  E-value=1.1e-05  Score=60.94  Aligned_cols=85  Identities=7%  Similarity=0.059  Sum_probs=54.0

Q ss_pred             cccCCCcCEEEccCCCCCCCcch----hhhhhccccccCccEEEccccccccc--------ccCCCCCCEEEccCCcccc
Q 044980          219 FIRLCKLTSIDFSSVKLSQDISQ----VLDIFSAYGTYALVSLILSHCQISAA--------LGKLSSLRNLDFSLNMLNG  286 (313)
Q Consensus       219 ~~~~~~L~~L~l~~n~l~~~~~~----~l~~~~~~~~~~L~~L~Ls~n~l~~~--------~~~~~~L~~L~l~~n~l~~  286 (313)
                      +...+.|+.|++++|.+......    .+...+     .|+.|++++|.+++.        +...++|++|++++|.+..
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~-----~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~  114 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSP-----SLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSV  114 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCS-----SCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCC
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcc-----cccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCC
Confidence            33445677788887777643222    233333     788888888887754        5666778888888775441


Q ss_pred             -------ccCccccCCCCCCEeeCCCCcC
Q 044980          287 -------SIPLSLGQISHLEYLDLSNNKF  308 (313)
Q Consensus       287 -------~ip~~l~~l~~L~~L~l~~n~l  308 (313)
                             .+...+...+.|+.|+++.+..
T Consensus       115 ~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         115 LGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             CCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             ccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence                   2344455567788888876643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.68  E-value=1.5e-05  Score=60.13  Aligned_cols=88  Identities=16%  Similarity=0.156  Sum_probs=63.2

Q ss_pred             ccCCCcCEEEccCC-CCCCCcchhhhh-hccccccCccEEEccccccccc--------ccCCCCCCEEEccCCccccc--
Q 044980          220 IRLCKLTSIDFSSV-KLSQDISQVLDI-FSAYGTYALVSLILSHCQISAA--------LGKLSSLRNLDFSLNMLNGS--  287 (313)
Q Consensus       220 ~~~~~L~~L~l~~n-~l~~~~~~~l~~-~~~~~~~~L~~L~Ls~n~l~~~--------~~~~~~L~~L~l~~n~l~~~--  287 (313)
                      .+.++|++|+++++ .+.......+.. +.  ..+.|+.|+|++|.+...        +...+.|++|++++|.+.+.  
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~--~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~   89 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAAC--NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL   89 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHT--TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHh--hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHH
Confidence            34578999999874 465432222222 22  223899999999999754        55678999999999999853  


Q ss_pred             --cCccccCCCCCCEeeCCCCcCc
Q 044980          288 --IPLSLGQISHLEYLDLSNNKFV  309 (313)
Q Consensus       288 --ip~~l~~l~~L~~L~l~~n~l~  309 (313)
                        +...+...+.|++|++++|.+.
T Consensus        90 ~~l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          90 ARLLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHHHHhCCcCCEEECCCCcCC
Confidence              3335667789999999998654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.09  E-value=8.2e-05  Score=55.83  Aligned_cols=89  Identities=16%  Similarity=0.083  Sum_probs=50.5

Q ss_pred             cccCCCcCEEEccCCCCCCCcchhhhhhccccccCccEEEccccccccc--------ccCCCCCCEEEc--cCCcccc--
Q 044980          219 FIRLCKLTSIDFSSVKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--------LGKLSSLRNLDF--SLNMLNG--  286 (313)
Q Consensus       219 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--------~~~~~~L~~L~l--~~n~l~~--  286 (313)
                      +...++|++|++++|.+.......+..... ..+.++.+++++|.+...        +...++|+.++|  ++|.+..  
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~-~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~  120 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLK-VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV  120 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHH-HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHh-hcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHH
Confidence            344556777777777766543333322211 122677777777776544        555667776544  4455653  


Q ss_pred             --ccCccccCCCCCCEeeCCCCcC
Q 044980          287 --SIPLSLGQISHLEYLDLSNNKF  308 (313)
Q Consensus       287 --~ip~~l~~l~~L~~L~l~~n~l  308 (313)
                        .+...+...+.|+.|+++.+..
T Consensus       121 ~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         121 EMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHhCCCcCEEeCcCCCC
Confidence              3344455667777777776643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.99  E-value=0.00015  Score=54.27  Aligned_cols=94  Identities=11%  Similarity=0.099  Sum_probs=64.5

Q ss_pred             cccccccCCCcCEEEccC-CCCCCCcchhhhhhccccccCccEEEccccccccc--------ccCCCCCCEEEccCCccc
Q 044980          215 IPTSFIRLCKLTSIDFSS-VKLSQDISQVLDIFSAYGTYALVSLILSHCQISAA--------LGKLSSLRNLDFSLNMLN  285 (313)
Q Consensus       215 ~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~~~~~~~~~L~~L~Ls~n~l~~~--------~~~~~~L~~L~l~~n~l~  285 (313)
                      +.....+.++|++|++++ +.++......+...-. ..+.|+.|++++|.++..        +...+.++.+++++|.+.
T Consensus         9 l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~-~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_           9 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHh-cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            333445668999999997 4565433333332211 223899999999998765        566789999999999987


Q ss_pred             cc----cCccccCCCCCCEeeC--CCCcCc
Q 044980          286 GS----IPLSLGQISHLEYLDL--SNNKFV  309 (313)
Q Consensus       286 ~~----ip~~l~~l~~L~~L~l--~~n~l~  309 (313)
                      ..    +...+...++|+.++|  ++|.+.
T Consensus        88 ~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          88 GSGILALVEALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             chhHHHHHHHHHhCccccEEeeccCCCcCc
Confidence            53    4456677888987555  566664