Citrus Sinensis ID: 045032

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350----
Protein Sequence
MDRNMGEWEKNSLINVLLQGRESAKQLQIQLNLRTSSSSHDQTRGIMLVQKIISSYEKALSMLNFCGSSSSTQEPQPPAGPVTESPTSLTGSPLSEDSDRDVKDPQEDVSKKSWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNHTCAQASNAILPPPTQPETKEPDTAAIEPQQHNYYQTTPQQQPEDALLNLRKGLKIVTEDLDVKPQQQSSIPPFHFPSPSVVIHPNFTGNFSPSFVSPQASEANNYTFSTSPPSGMNNFQGNQNFQSSSQDSEVNEIISGAAAAAATSATNPPTVDLDFPFGNIEFDPNFTFDNLGFFSSFHHSEKNSK
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccHHHHccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEccccccccccEEHccccccccccccccEEEEccccccccccEEEEEEccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mdrnmgewekNSLINVLLQGRESAKQLQIQLNlrtsssshdqtRGIMLVQKIISSYEKALSMLNfcgsssstqepqppagpvtesptsltgsplsedsdrdvkdpqedvskkswrkygqkdilgakyprgyyrctyrngqgclatkqvqrsdedptifeityrgnhtcaqasnailppptqpetkepdtaaiepqqhnyyqttpqqqpEDALLNLRKGLKIvtedldvkpqqqssippfhfpspsvvihpnftgnfspsfvspqaseannytfstsppsgmnnfqgnqnfqsssqdsEVNEIISGAAAAaatsatnpptvdldfpfgniefdpnftfdnlgffssfhhseknsk
Flexible Loop (DISEMBL)
mdrnmgeweknSLINVLLQGRESAKQLQIQLNlrtsssshdqtrGIMLVQKIISSYEKALSMLNFCGSSSSTQEPQPPAGPVTESPTSltgsplsedsdrdvkdpqedvskkswrkygqkdilgakyprgyYRCTYRNGQGclatkqvqrsdeDPTIFEITYRGNHTCAQASNAILPPPTQPETKEPDTAAIEPQQHNYYQTTPQQQPEDALLNLRKGLKIVTEDLDVKPQQQSSIPPFHFPSPSVVIHPNFTGNFSPSFVSPQASEANNYTFSTSPPSGMNNFQGNQNFQSSSQDSEVNEIISGAAAAAATSATNPPTVDLDFPFGNIEFDPNFTFDNLGFFSsfhhseknsk
Low Complexity Region (SEG)
MDRNMGEWEKNSLINVLLQGRESAKQLQIQLNLRTSSSSHDQTRGIMLVQKIISSYEKALSMLNFCGSSSSTQEPQPPAGPVTESPTSLTGSPLSEDSDRDVKDPQEDVSKKSWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNHTCAQASNAILPPPTQPETKEPDTAAIEPQQHNYYQTTPQQQPEDALLNLRKGLKIVTEDLDVKpqqqssippfhfpspsvviHPNFTGNFSPSFVSPQASEANNYTFSTSPPsgmnnfqgnqnfqsssqDSEVNEIISGaaaaaatsatNPPTVDLDFPFGNIEFDPNFTFDNLGFFSSFHHSEKNSK
Disordered region (IsUnstruct)
************LINVLL**************************GIMLVQKIISSYEKALSMLNF************************************************WRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQR***DPTIFEITYRGNHTCA*********************************************LRKGLKIVT**********************VVIHPNF******************************************************************TVDLDFPFGNIEFDPNFTFDNLGFFSSF********
Disordered Region (DISOPRED)
*************INVLLQGRESAKQL************************IIS******************************************************VSKKSWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNHTCA*****************************************************************************************************************************************AAA*A*SATNPPTVDLDFPFGNIEFDPNFTFDNLGFFS**********
Disordered Region (DISEMBL)
********EKNSLINVLLQGRESAKQLQIQLNLR********TRGIMLVQKIISSYEKALSMLNFCG***********************************************RKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNHTCAQASNAILPPPTQPETKEPDTAAIEPQQHNYYQTTPQQQPEDALLNLRKGLKIVTEDLDVKPQQQSSIPPFHFPSPSVVIHPNFTGNFSPSFVSPQASEANNYTFSTSPPSGMNNFQGNQN*********VNEIISGA*********NPPTVDLDFPFGNIEFDPNFTFDNLGFFSS*********
Disordered Region (DISPRO)
*****GEWEKNSLINVLLQGRESAKQLQIQLNL*******DQTRGIMLVQKIISSYEKALSMLN**********************************DRDVKDPQEDVSKKSWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNHT************************************************************VKPQQQSSIPPFHFPSPSVVIHPNFTGNFSPSFVSPQASEANNYTFSTSPPSGMNNFQGNQNFQ*SSQDSEVNEIISGAA*****SATNPPTVDLDFPFGNIEFDPNFTFDNLGF************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDRNMGEWEKNSLINVLLQGRESAKQLQIQLNLRTSSSSHDQTRGIMLVQKIISSYEKALSMLNFCGSSSSTQEPQPPAGPVTESPTSLTGSPLSEDSDRDVKDPQEDVSKKSWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNHTCAQASNAILPPPTQPETKEPDTAAIEPQQHNYYQTTPQQQPEDALLNLRKGLKIVTEDLDVKPQQQSSIPPFHFPSPSVVIHPNFTGNFSPSFVSPQASEANNYTFSTSPPSGMNNFQGNQNFQSSSQDSEVNEIISGAAAAAATSATNPPTVDLDFPFGNIEFDPNFTFDNLGFFSSFHHSEKNSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	354	2.2.26 [Sep-21-2011]
Q8H0Y8	313	Probable WRKY transcripti	yes	no	0.511	0.578	0.441	2e-38
Q9SUP6	324	Probable WRKY transcripti	no	no	0.596	0.651	0.376	6e-36
Q9FL62	303	Probable WRKY transcripti	no	no	0.446	0.521	0.394	6e-32
Q9SKD9	295	Probable WRKY transcripti	no	no	0.454	0.545	0.396	2e-23
Q93WU8	346	Probable WRKY transcripti	no	no	0.446	0.456	0.333	6e-19
Q9LY00	294	Probable WRKY transcripti	no	no	0.158	0.190	0.660	4e-18
Q9SHB5	292	WRKY transcription factor	no	no	0.158	0.191	0.607	5e-17
Q9FH83	1288	Probable WRKY transcripti	no	no	0.152	0.041	0.629	1e-15
Q9FLX8	348	Probable WRKY transcripti	no	no	0.169	0.172	0.578	8e-14
Q93WV7	254	Probable WRKY transcripti	no	no	0.471	0.657	0.274	1e-13

>sp|Q8H0Y8|WRK41_ARATH Probable WRKY transcription factor 41 OS=Arabidopsis thaliana GN=WRKY41 PE=2 SV=2

 Score =  160 bits (405), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/231 (44%), Positives = 130/231 (56%), Gaps = 50/231 (21%)

Query: 5   MGEWEKNSLINVLLQGRESAKQLQIQLNLRTSSSSHDQTRGIM--LVQKIISSYEKALSM 62
           M  WE+ SL+N L+ G ++AKQLQ   +   S+SS   T  I   L+  I+SS++KA+ M
Sbjct: 3   MMNWERRSLLNELIHGLKAAKQLQGSSSPSLSASSSYLTTEIKENLLHNIVSSFKKAILM 62

Query: 63  LNFCGSSSSTQE-------PQPPA--GPVTESPTSLTGSPLSEDS--------------- 98
           LN     S+TQ        P P A  G V  SP S+TG+P SE+                
Sbjct: 63  LN----GSTTQHNPTIELAPDPLAHPGKVPGSPASITGNPRSEEFFNVRSKEFNLSSKKR 118

Query: 99  --------------DRDVKDPQEDVSKKSWRKYGQKDILGAKYPRGYYRCTYRNGQGCLA 144
                         +R ++ P +D+   SWRKYGQKDILGAK+PR YYRCT+RN Q C A
Sbjct: 119 KMLPKWTEQVRISPERGLEGPHDDIF--SWRKYGQKDILGAKFPRSYYRCTFRNTQYCWA 176

Query: 145 TKQVQRSDEDPTIFEITYRGNHTCAQASNAILPPPTQPETKEPDTAAIEPQ 195
           TKQVQRSD DPTIFE+TYRG HTC+Q     +P P + ETK   T A+  Q
Sbjct: 177 TKQVQRSDGDPTIFEVTYRGTHTCSQG----IPLPEKRETKPKHTVAVNYQ 223

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUP6|WRK53_ARATH Probable WRKY transcription factor 53 OS=Arabidopsis thaliana GN=WRKY53 PE=1 SV=1

 Score =  151 bits (382), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 104/276 (37%), Positives = 148/276 (53%), Gaps = 65/276 (23%)

Query: 3   RNMGEWEKNSLINVLLQGRESAKQLQIQLN--------LRTSSSSHDQTRGIMLVQKIIS 54
           R+M  WE+ +L++ L+ G ++AK+LQ +L           + +++  +T  I LV++I+S
Sbjct: 4   RDMLSWEQKTLLSELINGFDAAKKLQARLREAPSPSSSFSSPATAVAETNEI-LVKQIVS 62

Query: 55  SYEKALSMLNFCGSSSSTQEPQPPA-------GPVTESPTSLTGSPLSED---------- 97
           SYE++L +LN+  S S    P P         G V ESP S+ GSP SE+          
Sbjct: 63  SYERSLLLLNWSSSPSVQLIPTPVTVVPVANPGSVPESPASINGSPRSEEFADGGGSSES 122

Query: 98  --------------------------SDRDVKDPQEDVSKKSWRKYGQKDILGAKYPRGY 131
                                      +R ++ PQ+DV   SWRKYGQKDILGAK+PR Y
Sbjct: 123 HHRQDYIFNSKKRKMLPKWSEKVRISPERGLEGPQDDVF--SWRKYGQKDILGAKFPRSY 180

Query: 132 YRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNHTCAQASNAILPPPTQPETKEPDTAA 191
           YRCT+R+ Q C ATKQVQRSD D T+FE+TYRG HTC+QA            T+ P  A+
Sbjct: 181 YRCTHRSTQNCWATKQVQRSDGDATVFEVTYRGTHTCSQAI-----------TRTPPLAS 229

Query: 192 IEPQQHNYYQTTPQQQPEDALLNLRKGLKIVTEDLD 227
            E +Q    +    Q+P+D L +L+  L + T+ LD
Sbjct: 230 PEKRQDTRVKPAITQKPKDILESLKSNLTVRTDGLD 265

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May regulate the early events of leaf senescence. Negatively regulates the expression of ESR/ESP.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL62|WRK30_ARATH Probable WRKY transcription factor 30 OS=Arabidopsis thaliana GN=WRKY30 PE=2 SV=1

 Score =  138 bits (348), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 82/208 (39%), Positives = 115/208 (55%), Gaps = 50/208 (24%)

Query: 1   MDRNM--GEWEK--NSLINVLLQGRESAKQLQIQLNLRTSSSSHDQTRGIMLVQKIISSY 56
           M++N   GEWEK  N +  ++++GR+ A Q          S+S  +TR   L +KI+ SY
Sbjct: 1   MEKNHSSGEWEKMKNEINELMIEGRDYAHQF--------GSASSQETRE-HLAKKILQSY 51

Query: 57  EKALSMLNFCGSSSSTQEPQPPAGPVTESPTSLTGSPLSEDSDRD---VKDPQEDVSKKS 113
            K+L+++N+ G      +                GSP S+DSD++   +K  ++ + + S
Sbjct: 52  HKSLTIMNYSGELDQVSQG--------------GGSPKSDDSDQEPLVIKSSKKSMPRWS 97

Query: 114 --------------------WRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDE 153
                               WRKYGQKDILGAK+PRGYYRCTYR  QGC ATKQVQRSDE
Sbjct: 98  SKVRIAPGAGVDRTLDDGFSWRKYGQKDILGAKFPRGYYRCTYRKSQGCEATKQVQRSDE 157

Query: 154 DPTIFEITYRGNHTCAQASNAILPPPTQ 181
           +  + EI+YRG H+C+QA+N     P Q
Sbjct: 158 NQMLLEISYRGIHSCSQAANVGTTMPIQ 185

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKD9|WRK46_ARATH Probable WRKY transcription factor 46 OS=Arabidopsis thaliana GN=WRKY46 PE=2 SV=1

 Score =  110 bits (275), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/179 (39%), Positives = 95/179 (53%), Gaps = 18/179 (10%)

Query: 9   EKNSLINVLLQGRESAKQLQIQLNLRTSSSSHDQTRGIMLVQKIISSYEKALSMLNFCGS 68
           E+  +IN L  G+E A +L   L   TSS   ++T    L+  I+  Y+ A+ ML+F   
Sbjct: 4   EEKLVINELELGKELANRLMNNLK-HTSSVDSNKT----LISDILRIYQNAIFMLSFNQD 58

Query: 69  SSSTQEPQPPAGPVTESPTSLTGSPLSEDSDRDVK----DPQEDVS---KKSWRKYGQKD 121
            +  +      G   +S        +SE +   VK      QE+ S      WRKYGQK+
Sbjct: 59  KNILKRSLEIDGK--DSKNVFKKRKVSEKNTEKVKVFVATEQENGSIDDGHCWRKYGQKE 116

Query: 122 ILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNHTCAQASNAILPPPT 180
           I G+K PR YYRCT+R  Q CLA KQVQ+SD DP++FE+ Y GNHTC    N I  P T
Sbjct: 117 IHGSKNPRAYYRCTHRFTQDCLAVKQVQKSDTDPSLFEVKYLGNHTC----NNITSPKT 171

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WU8|WRK54_ARATH Probable WRKY transcription factor 54 OS=Arabidopsis thaliana GN=WRKY54 PE=2 SV=2

 Score = 95.1 bits (235), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 96/201 (47%), Gaps = 43/201 (21%)

Query: 10  KNSLINVLLQGRESAKQLQIQLNLRTSSSSH-DQTRGIM--------------LVQKIIS 54
           K  +++ L++G E A QLQ+ L+ + S+  H D+TR +               L+ KI+ 
Sbjct: 12  KRKVVDQLVEGYEFATQLQLLLSHQHSNQYHIDETRLVSGSGSVSGGPDPVDELMSKILG 71

Query: 55  SYEKALSMLNF-------------------CGSSSSTQEPQPPAGPVTESPTSLTGSPLS 95
           S+ K +S+L+                    CG  S+T       G   ES     G    
Sbjct: 72  SFHKTISVLDSFDPVAVSVPIAVEGSWNASCGDDSAT-PVSCNGGDSGESKKKRLGVGKG 130

Query: 96  EDS--DRDVKDPQEDVSKKS------WRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQ 147
           +     R  +     V  KS      WRKYGQK+IL   +PR Y+RCT++  QGC ATKQ
Sbjct: 131 KRGCYTRKTRSHTRIVEAKSSEDRYAWRKYGQKEILNTTFPRSYFRCTHKPTQGCKATKQ 190

Query: 148 VQRSDEDPTIFEITYRGNHTC 168
           VQ+ D+D  +F+ITY G HTC
Sbjct: 191 VQKQDQDSEMFQITYIGYHTC 211

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LY00|WRK70_ARATH Probable WRKY transcription factor 70 OS=Arabidopsis thaliana GN=WRKY70 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 46/56 (82%)

Query: 113 SWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNHTC 168
           SWRKYGQK+IL AK+PR Y+RCT++  QGC ATKQVQ+ + +P +F ITY GNHTC
Sbjct: 124 SWRKYGQKEILNAKFPRSYFRCTHKYTQGCKATKQVQKVELEPKMFSITYIGNHTC 179

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHB5|WRK55_ARATH WRKY transcription factor 55 OS=Arabidopsis thaliana GN=WRKY55 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 45/56 (80%)

Query: 113 SWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNHTC 168
           +WRKYGQK+ILG+++PR YYRCT++    C A KQVQR ++DP  F +TYRG+HTC
Sbjct: 177 TWRKYGQKEILGSRFPRAYYRCTHQKLYNCPAKKQVQRLNDDPFTFRVTYRGSHTC 232

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/54 (62%), Positives = 41/54 (75%)

Query: 113  SWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNH 166
            +WRKYGQKDILG+++PRGYYRC Y+   GC ATKQVQRS+ D  +  ITY   H
Sbjct: 1212 TWRKYGQKDILGSRFPRGYYRCAYKFTHGCKATKQVQRSETDSNMLAITYLSEH 1265

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLX8|WRK27_ARATH Probable WRKY transcription factor 27 OS=Arabidopsis thaliana GN=WRKY27 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 47/64 (73%), Gaps = 4/64 (6%)

Query: 106 QEDVSKK--SWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYR 163
           QE++S    +WRKYGQK I G+ YPR YYRC+  + +GCLA KQV+RS+ DP IF +TY 
Sbjct: 160 QENLSSDLWAWRKYGQKPIKGSPYPRNYYRCS--SSKGCLARKQVERSNLDPNIFIVTYT 217

Query: 164 GNHT 167
           G HT
Sbjct: 218 GEHT 221

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV7|WRK67_ARATH Probable WRKY transcription factor 67 OS=Arabidopsis thaliana GN=WRKY67 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 92/215 (42%), Gaps = 48/215 (22%)

Query: 14  INVLLQGRESAKQLQIQL-NLRTSSSSHDQTRGIMLVQKIISSYEKALSMLNFCGSSSST 72
           +  LL+G+  A  L+I L N   SS S +      L+  I+ S+  ALS ++        
Sbjct: 10  MEALLRGQGCANNLKILLENGEISSVSTEP-----LIHTILDSFSLALSFMD-------- 56

Query: 73  QEPQPPAGPVTESPTSLTGSPLSEDSDRDVKDPQEDVSKK------------------SW 114
             P  P  P  ES +    S +S  S + V+  ++    +                  +W
Sbjct: 57  -SPNHP--PYHESSSHNMASHMSRRSSKQVQHRRKLCVAEGLVNYNHDSRTMCPNDGFTW 113

Query: 115 RKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNHTCAQAS-- 172
           RKYGQK I  + + R YYRCTY   Q C ATK+VQ+  ++P ++  TY G H C   +  
Sbjct: 114 RKYGQKTIKASAHKRCYYRCTYAKDQNCNATKRVQKIKDNPPVYRTTYLGKHVCKAFAVH 173

Query: 173 -----------NAILPPPTQPETKEPDTAAIEPQQ 196
                      + ++P P  P+    D   I  ++
Sbjct: 174 DDTYSSTMIRFDQVVPEPIMPQLTTIDHQVITVEE 208

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	354
224120612	371	predicted protein [Populus trichocarpa]	0.912	0.870	0.514	4e-82
259121419	372	WRKY transcription factor 27 [(Populus t	0.915	0.870	0.509	1e-81
359490533	364	PREDICTED: probable WRKY transcription f	0.884	0.859	0.473	3e-72
356509299	364	PREDICTED: probable WRKY transcription f	0.903	0.879	0.484	1e-70
255545054	370	WRKY transcription factor, putative [Ric	0.895	0.856	0.5	1e-66
224075078	342	predicted protein [Populus trichocarpa]	0.867	0.897	0.464	2e-66
356516015	364	PREDICTED: probable WRKY transcription f	0.884	0.859	0.457	8e-66
259121407	339	WRKY transcription factor 21 [(Populus t	0.858	0.896	0.464	3e-65
259121389	338	WRKY transcription factor 12 [(Populus t	0.867	0.908	0.454	3e-64
224053795	338	predicted protein [Populus trichocarpa]	0.867	0.908	0.448	5e-63

>gi|224120612|ref|XP_002318373.1| predicted protein [Populus trichocarpa] gi|222859046|gb|EEE96593.1| predicted protein [Populus trichocarpa]

 Score =  311 bits (796), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 199/387 (51%), Positives = 233/387 (60%), Gaps = 64/387 (16%)

Query: 4   NMGEWEKNSLINVLLQGRESAKQLQIQLNLRTSSSSHDQTRGIMLVQKIISSYEKALSML 63
           NMG+WE+ +L+  L  G E AKQLQI LN+ +SS    +TR + LVQKI++SYEKALSML
Sbjct: 3   NMGDWEQKNLVEELTLGMELAKQLQIHLNVPSSSR---ETREV-LVQKILTSYEKALSML 58

Query: 64  NFCGSSSSTQEPQPPAGPV---TESPTSLTGSPLSEDSDRDVKDPQE----DVSKK---- 112
           NF   +S   E  P  G     +ESP S +GSP SEDSDRD +D ++      S+K    
Sbjct: 59  NF--GTSLVGELHPVGGITIRNSESPPSHSGSPRSEDSDRDTRDQRQIDYGSSSRKSMPR 116

Query: 113 ---------------------SWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRS 151
                                SWRKYGQK ILGAKYPRGYYRCT+RN QGCLATKQVQRS
Sbjct: 117 WTKQVRVNPGMGLEGPLDDGFSWRKYGQKAILGAKYPRGYYRCTHRNVQGCLATKQVQRS 176

Query: 152 DEDPTIFEITYRGNHTCAQASNAILPPPTQPETKEPDT-AAIEPQQHNYYQ-TTPQQQPE 209
           DEDPTIFEITYRG HTC QASN +LP     E + P T   IEPQQ+   Q   P  Q  
Sbjct: 177 DEDPTIFEITYRGRHTCTQASN-LLPLTQLRENQGPSTNITIEPQQNQPDQENNPHTQ-- 233

Query: 210 DALLNLRKGLKIVTEDLDVKPQQQSSIPPFHFPSPSVV------------IHPNFTGNFS 257
           + L N R+GLK++TEDLD   QQ      F FPS S V            +  +F GNFS
Sbjct: 234 ELLSNFRRGLKVMTEDLDSHDQQSFPTNTFQFPSTSTVKPENNSLFPPSMVENSFVGNFS 293

Query: 258 PSFVSPQASEANNYTFSTSPPSGMNNFQGNQNFQSSSQDSEVNEIISGAAAAAATSATNP 317
           P F+SP  S  N Y  S SP    ++F GN+NFQSS  +SE+  IIS AA     S T  
Sbjct: 294 PPFISPSDSVTNYY--SVSPNEMQHSFGGNKNFQSS--ESELTGIISAAA-----STTTS 344

Query: 318 PTVDLDFPFGNIEFDPNFTFDNLGFFS 344
           PTV LDFP GN+ FDPNFTFDN GF S
Sbjct: 345 PTVGLDFPSGNVNFDPNFTFDNSGFLS 371

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259121419|gb|ACV92029.1| WRKY transcription factor 27 [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  309 bits (791), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 197/387 (50%), Positives = 233/387 (60%), Gaps = 63/387 (16%)

Query: 4   NMGEWEKNSLINVLLQGRESAKQLQIQLNLRTSSSSHDQTRGIMLVQKIISSYEKALSML 63
           NMG+WE+ +L+  L  G E AKQLQI LN+ +SS    +TR + LVQKI++SYEKALS L
Sbjct: 3   NMGDWEQKNLVEELTLGMELAKQLQIHLNVPSSSR---ETREV-LVQKILTSYEKALSRL 58

Query: 64  NFCGSSSSTQEPQPPAGPV---TESPTSLTGSPLSEDSDRDVKDPQE----DVSKKS--- 113
           NF   +S   E  P  G     +ESP S +GSP SEDSDRD +DP++      S+KS   
Sbjct: 59  NF--GTSLVGELHPVGGITIRNSESPPSHSGSPRSEDSDRDTRDPRQIDYGSSSRKSMPR 116

Query: 114 ----------------------WRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRS 151
                                 WRKYGQK ILGAKYPRGYYRCT+RN QGCLATKQVQRS
Sbjct: 117 WTKQVRVNPGMGLEGPLDDGFSWRKYGQKAILGAKYPRGYYRCTHRNVQGCLATKQVQRS 176

Query: 152 DEDPTIFEITYRGNHTCAQASNAILPPPTQPETKEPDT-AAIEPQQHNYYQ-TTPQQQPE 209
           DEDPTIFEITYRG HTC QASN +LP     E + P T   IEPQQ+  +Q   P  Q  
Sbjct: 177 DEDPTIFEITYRGRHTCTQASN-LLPLSQLRENQGPSTNITIEPQQNQPHQENNPYTQ-- 233

Query: 210 DALLNLRKGLKIVTEDLDVKPQQQSSIPPFHFPSPSVV------------IHPNFTGNFS 257
           + L N R+GLK++TE LD   QQ      F FPS S V            +  +F  NFS
Sbjct: 234 ELLSNFRRGLKVMTEGLDSHDQQSFPTNTFQFPSTSTVKPENNSLFPPSMVENSFVRNFS 293

Query: 258 PSFVSPQASEANNYTFSTSPPSGMNNFQGNQNFQSSSQDSEVNEIISGAAAAAATSATNP 317
           P F+SP  S  N Y  S SP    + F GN+NFQSS  +SE+ + I  AAA+  TS    
Sbjct: 294 PPFISPSDSVTNYY--SVSPNEMQHGFGGNKNFQSS--ESELTDHIISAAASTTTS---- 345

Query: 318 PTVDLDFPFGNIEFDPNFTFDNLGFFS 344
           PTV LDFPFGN+ FDPNFTFDN GF S
Sbjct: 346 PTVGLDFPFGNVNFDPNFTFDNSGFLS 372

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490533|ref|XP_002267793.2| PREDICTED: probable WRKY transcription factor 53-like [Vitis vinifera] gi|302143686|emb|CBI22547.3| unnamed protein product [Vitis vinifera]

 Score =  278 bits (710), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 184/389 (47%), Positives = 226/389 (58%), Gaps = 76/389 (19%)

Query: 4   NMGEWEKNSLINVLLQGRESAKQLQIQLNLRTSSSSHDQTRGIMLVQKIISSYEKALSML 63
           NMG WE+ +LIN L  GRE AKQLQI L++  SSSSHD      LVQKI++SYEKALS+L
Sbjct: 3   NMGSWEQKNLINELTNGRELAKQLQIHLSV--SSSSHDARES--LVQKILTSYEKALSLL 58

Query: 64  NFCGSSSSTQEPQPPAGP--------VTESPTSLTGSPLSEDSDRDVKDPQEDVSKK--- 112
              G      EPQ  A          ++ESP SL+GSP SEDSD++ +   +D S+K   
Sbjct: 59  RCSGP---VGEPQAAAAGGGGAIGIGMSESPRSLSGSPRSEDSDKEQE--HKDGSRKRKT 113

Query: 113 ------------------------SWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQV 148
                                   SWRKYGQKDILGAKYPR YY+CT+RN QGCLATKQV
Sbjct: 114 LPRWTKQVQMSLGPGPEGPLDDGFSWRKYGQKDILGAKYPRSYYKCTHRNAQGCLATKQV 173

Query: 149 QRSDEDPTIFEITYRGNHTCAQASNAILPPPTQPETKEPDTAAIEPQQH---NYYQTTPQ 205
           QRSD+DPTIFEITYRG HTC Q S  I PP   P  +      ++ + H   N      Q
Sbjct: 174 QRSDDDPTIFEITYRGRHTCTQVSQQIPPPAALPGNQ----GLMDSKDHQQFNLQPQQNQ 229

Query: 206 QQPEDALLNLRKGLKIVTEDLDVKPQQQSSIPPFHFPSPSVV-----------IHPNFTG 254
           QQ +D LL+ + GL++VTE LD    Q  + PPF F S S +           +  N  G
Sbjct: 230 QQAQDMLLSFQSGLRVVTEGLDTPSDQ--AFPPFCFTSTSNIKVEEPGFSPSMMDNNIVG 287

Query: 255 NFSPSFVSPQASEANNYTFSTSPPSGMNNFQGNQNFQSSSQDSEVNEIISGAAAAAATSA 314
           NF  SFVSP AS +N ++ S+     MN+  GNQN Q+   ++ +NEIIS AA     S 
Sbjct: 288 NFPTSFVSPAASRSNYFSMSSDE---MNSLGGNQNLQAP--EANLNEIISAAA-----ST 337

Query: 315 TNPPTVDLDFPFGNIEFDPNFTFDNLGFF 343
           TNP      FPFG++EFDPNF FD+LGFF
Sbjct: 338 TNPQFE--QFPFGSMEFDPNFNFDHLGFF 364

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509299|ref|XP_003523388.1| PREDICTED: probable WRKY transcription factor 41-like [Glycine max]

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 188/388 (48%), Positives = 231/388 (59%), Gaps = 68/388 (17%)

Query: 1   MDRNMGEWEKNSLINVLLQGRESAKQLQIQLNLRTSSSSHDQTRGIMLVQKIISSYEKAL 60
           MD NMG+    S+I+ LLQG E A+QLQ+ L+L TSS    +TR  +L+QKIIS++EKAL
Sbjct: 1   MD-NMGD--PKSIIHELLQGLELARQLQVYLHLPTSSQ---ETRD-LLIQKIISTFEKAL 53

Query: 61  SMLNFCGSSSSTQEPQPPAGP----VTESPTSLTGSPLSEDSDRDVKDPQEDVSKK---- 112
            M+N  G   + +    P G     V++SP  L+ SP SEDSDRD KD   +  KK    
Sbjct: 54  EMVNCKGPVPAGESSHYPLGAALIRVSDSP--LSSSPRSEDSDRDFKDQDPNAFKKRNTL 111

Query: 113 -----------------------SWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQ 149
                                  SWRKYGQKDILGA YPRGYYRCT+RN QGC+ATKQVQ
Sbjct: 112 PRWTKHIRVTPGMGVEGPLDDGYSWRKYGQKDILGALYPRGYYRCTHRNVQGCMATKQVQ 171

Query: 150 RSDEDPTIFEITYRGNHTCAQASN-AILPPPTQPETKEPDTAAIEPQQHNYYQTTPQQQP 208
           RSDEDPTIFEITYRG HTC  A+N      P  PE +EP      PQQ N  Q   QQQ 
Sbjct: 172 RSDEDPTIFEITYRGKHTCTMANNVGSSSSPIPPENQEPSLNNTNPQQQNILQNLEQQQ- 230

Query: 209 EDALLNLRKGLKIVTEDLDVKPQQQSSIPPFHFPS-----------PSVVIHPNFTGNFS 257
            D LL+LRKGL++ TE+LD  P QQS + PF FP            PS V+  NF    S
Sbjct: 231 SDLLLSLRKGLRVQTENLD-SPDQQSLV-PFRFPLSTNIKIESQVFPSPVLE-NFIS--S 285

Query: 258 PSFVSPQASEANNYTFSTSPPSGMNNFQGNQNFQSSSQDSEVNEIISGAAAAAATSATNP 317
           PS++S  AS  ++++ S   PSG+N+F GN N  +S  +S++N++I     A  TSA N 
Sbjct: 286 PSYMSSAASGISHFSVS---PSGVNSFGGNPNLANS--ESQINDMI----PATTTSAPNS 336

Query: 318 PTVDLDFPFGNIEFD-PNFTFDNLGFFS 344
            TV L+FPF   EFD  NFTFDN  FFS
Sbjct: 337 STVGLEFPFDQFEFDGQNFTFDNPPFFS 364

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545054|ref|XP_002513588.1| WRKY transcription factor, putative [Ricinus communis] gi|223547496|gb|EEF48991.1| WRKY transcription factor, putative [Ricinus communis]

 Score =  259 bits (662), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 195/390 (50%), Positives = 234/390 (60%), Gaps = 73/390 (18%)

Query: 5   MGEWEKNSLINVLLQGRESAKQLQIQLNLRTSSSSHDQTRGIMLVQKIISSYEKALSMLN 64
           MG+ E+ +L+N L  GRE  +QLQI LN+ + S    +TR  +LVQKI+SSYEKALSMLN
Sbjct: 4   MGDCEQKNLVNELRMGRELTRQLQIHLNIPSYSR---ETRE-LLVQKILSSYEKALSMLN 59

Query: 65  FCGSSSSTQEPQPPA----GPVTESPTSLTGSPLSE-DSDRDVKDPQ-EDVSKK------ 112
              S   T+EP P      G     P SL+GSP S+ DSDRD KD   +DVS+K      
Sbjct: 60  L--SRLITKEPLPTGVATNGMPESPPLSLSGSPRSDQDSDRDFKDQDPKDVSRKRTSTAR 117

Query: 113 ---------------------SWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRS 151
                                SWRKYGQKDILGA+YPRGYYRCT+R  QGCLATKQVQRS
Sbjct: 118 WTKQVRVNPGMGLEGPLDDGFSWRKYGQKDILGARYPRGYYRCTHRIVQGCLATKQVQRS 177

Query: 152 DEDPTIFEITYRGNHTCAQASNAILPPPTQPE--TKEPDTAAIEPQQHNYYQTTPQQQ-- 207
           DEDPTIFE+TYRG HTC Q  +     P  PE   +E +++ IEPQQ       P+ Q  
Sbjct: 178 DEDPTIFEVTYRGRHTCTQMLHY---NPQLPENINQETNSSCIEPQQ-------PENQHP 227

Query: 208 PEDALLNLRKGLKIVTEDLDVKPQQQSSIPPFHFPSPSVVIHP-----------NFTGNF 256
            +D LLNLR  LK++TE LD   Q   S+PPFHFPS S VI             N  GNF
Sbjct: 228 SQDPLLNLRSALKVITEGLDDLEQ---SLPPFHFPSTSNVIAQNQVFSPSMLDNNLMGNF 284

Query: 257 SPSFVSPQASEANNYTFSTSPPSGMNNF-QGNQNFQSSSQDSEVNEIISGAAAAAATSAT 315
           S SF+SP  S A    FS S      +F  GNQ+ Q+S  DS+ ++II  AAAA  TSAT
Sbjct: 285 SSSFISPSTSTAKPNYFSASSSGLHQSFGGGNQSLQTS--DSDPSDII--AAAAGTTSAT 340

Query: 316 NPPTVDLDFPFGNIEFDPN-FTFDNLGFFS 344
           + PT  +DFPFGN+EFDP  F+FDN GF S
Sbjct: 341 DSPTTGVDFPFGNVEFDPKYFSFDNHGFIS 370

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075078|ref|XP_002304549.1| predicted protein [Populus trichocarpa] gi|222841981|gb|EEE79528.1| predicted protein [Populus trichocarpa]

 Score =  259 bits (661), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 170/366 (46%), Positives = 206/366 (56%), Gaps = 59/366 (16%)

Query: 8   WEKNSLINVLLQGRESAKQLQIQLNLRTSSSSHDQTRGIMLVQKIISSYEKALSMLNFCG 67
           WE+ +LI  L+QG E AKQL+  LN  +S  S D+     L+Q+I++SYE+AL +LN+ G
Sbjct: 7   WEQQTLIAELVQGMELAKQLRAHLNATSSVESRDE-----LLQRILASYERALLILNWGG 61

Query: 68  SSSSTQEPQPPAGPVTESPTSLTGSPLSEDSDRDVKDPQ--EDVSKK------------- 112
           S    Q     AG V ESP S+ GS  S++ D  VKD Q   + SKK             
Sbjct: 62  SMGQPQSVGVSAG-VPESPISINGSSRSDEFDGGVKDNQGYNEASKKRKTTPRWTDHVRV 120

Query: 113 --------------SWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIF 158
                         SWRKYGQKDILGAKYPR YYRCTYRN Q C ATKQVQRSDEDPTIF
Sbjct: 121 SPENGLEGPHDDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPTIF 180

Query: 159 EITYRGNHTCAQASNAILPPPTQPETKEPDTAAIEPQQHNYYQTTPQQQPEDALLNLRKG 218
           EITYRG HTCA  + +I P P+ PE +E                  QQQ + AL N +  
Sbjct: 181 EITYRGTHTCAHGNQSI-PSPSSPEKQEKKQKNTN-------NNYQQQQSQQALYNFQNS 232

Query: 219 LKIVTEDLDVKPQQQSSIPPFHFPSPSVVIHPNFTGNFSPSFVSPQASEANNYTFSTSPP 278
           LK++TEDLD K      + PF FPS +     N + ++SPSF+SP   E  +Y+ S   P
Sbjct: 233 LKVITEDLDNKEM----VSPFSFPS-AYGCSKNVS-SYSPSFISPATPEPTHYSVS---P 283

Query: 279 SGMNNFQGNQNFQSSSQDSEVNEIISGAAAAAATSATNPPTVDLDFPFGNIEFDPNFTFD 338
             MNNF G  N Q    +S+  EIIS       TSATN P VDLDF    +E DPNF FD
Sbjct: 284 FQMNNFVGAYNLQ--HLESDFTEIIS-----TNTSATNSPIVDLDFSLDQVELDPNFPFD 336

Query: 339 NLGFFS 344
             GFFS
Sbjct: 337 TPGFFS 342

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516015|ref|XP_003526692.1| PREDICTED: probable WRKY transcription factor 53-like [Glycine max]

 Score =  256 bits (655), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 172/376 (45%), Positives = 219/376 (58%), Gaps = 63/376 (16%)

Query: 12  SLINVLLQGRESAKQLQIQLNLRTSSSSHDQTRGIMLVQKIISSYEKALSMLNFCGSSSS 71
           S+I+ LLQG E A+QLQ+ L++ +SS    +TR  +L+QKIIS++EK L M+ + G   +
Sbjct: 9   SIIHELLQGLELARQLQVHLHMPSSSQ---ETRD-LLIQKIISTFEKVLEMVKWKGPVPA 64

Query: 72  TQEPQPPAGPVTESPTSLTGSPLS-EDSDRDVKDPQEDVSKK------------------ 112
            +  Q P G        ++ SPLS EDSDRD+KD   +  KK                  
Sbjct: 65  GESSQHPLGAAL---IRMSDSPLSSEDSDRDLKDQDPNAFKKRNTLPRWTKQIRVTPGMG 121

Query: 113 ---------SWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYR 163
                    SWRKYGQKDILGA YPRGYYRCT+RN QGC+ATKQVQRSDEDPTIFEITYR
Sbjct: 122 VEGPLDDGYSWRKYGQKDILGALYPRGYYRCTHRNVQGCMATKQVQRSDEDPTIFEITYR 181

Query: 164 GNHTCAQASNAILPPPTQPETKEPDTAAIEPQQHNYYQTTPQ---QQPEDALLNLRKGLK 220
           G HTC  A+N     P   E +EP        QH + Q   Q   QQ  + LL+LRKGL+
Sbjct: 182 GKHTCTVANNVGSSSPIPLENQEPSLNNTNIPQHQHQQNILQSHEQQQNELLLSLRKGLR 241

Query: 221 IVTEDLDVKPQQQSSIPPFHFPS-----------PSVVIHPNFTGNFSPSFVSPQASEAN 269
           + TE+LD  P+Q   + PF FP            PS V+  NFT   SPS+VSP AS   
Sbjct: 242 VQTENLD-SPEQ--PLVPFRFPLSTNIKNESHVFPSPVLE-NFT---SPSYVSPAASGIG 294

Query: 270 NYTFSTSPPSGMNNFQGNQNFQSSSQDSEVNEIISGAAAAAATSATNPPTVDLDFPFGNI 329
           +  FS SP   +N+F+GN N  +S  +S++N++I   A    ++A N  TV L+FPF   
Sbjct: 295 H--FSVSPSGVVNSFEGNPNLANS--ESQINDMI--PATTTTSAAPNSSTVGLEFPFDQF 348

Query: 330 EFD-PNFTFDNLGFFS 344
           EFD  NFTFDN  FFS
Sbjct: 349 EFDGQNFTFDNPRFFS 364

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259121407|gb|ACV92023.1| WRKY transcription factor 21 [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  255 bits (651), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 170/366 (46%), Positives = 207/366 (56%), Gaps = 62/366 (16%)

Query: 8   WEKNSLINVLLQGRESAKQLQIQLNLRTSSSSHDQTRGIMLVQKIISSYEKALSMLNFCG 67
           WE+ +LI  L+QG E AKQL+  LN  +S  S D+     L+Q+I++SYE+AL +LN+ G
Sbjct: 7   WEQQTLIAELVQGMELAKQLRSHLNATSSVESRDE-----LLQRILASYERALLILNWGG 61

Query: 68  SSSSTQEPQPPAGPVTESPTSLTGSPLSEDSDRDVKDPQ--EDVSKK------------- 112
           S    Q     AG V ESP S+ GS  S++ D  VKD Q   + SKK             
Sbjct: 62  SMGQPQSVGVSAG-VPESPISINGSSRSDEFDGGVKDNQGYNEASKKRKTTPRWTDHVRV 120

Query: 113 --------------SWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIF 158
                         SWRKYGQKDILGAKYPR YYRCTYRN Q C ATKQVQRSDEDPTIF
Sbjct: 121 SPENGLEGPHDDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPTIF 180

Query: 159 EITYRGNHTCAQASNAILPPPTQPETKEPDTAAIEPQQHNYYQTTPQQQPEDALLNLRKG 218
           EITYRG HTCA  + +I P P + E K+ +T               QQQ + AL N +  
Sbjct: 181 EITYRGTHTCAHGNQSI-PSPEKQEKKQKNTNN----------NYQQQQSQQALYNFQNS 229

Query: 219 LKIVTEDLDVKPQQQSSIPPFHFPSPSVVIHPNFTGNFSPSFVSPQASEANNYTFSTSPP 278
           LK++TEDLD K      + PF FPS +     N + ++SPSF+SP   E  +Y+ S   P
Sbjct: 230 LKVITEDLDNKEM----VSPFSFPS-AYGCSKNVS-SYSPSFISPATPEPTHYSVS---P 280

Query: 279 SGMNNFQGNQNFQSSSQDSEVNEIISGAAAAAATSATNPPTVDLDFPFGNIEFDPNFTFD 338
             MNNF G  N Q    +S+  EIIS       TSATN P VDLDF    +E DPNF FD
Sbjct: 281 FQMNNFVGAHNLQ--HLESDFTEIIS-----TNTSATNSPIVDLDFSLDQVELDPNFPFD 333

Query: 339 NLGFFS 344
             GFFS
Sbjct: 334 TPGFFS 339

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259121389|gb|ACV92014.1| WRKY transcription factor 12 [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  251 bits (642), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 168/370 (45%), Positives = 206/370 (55%), Gaps = 63/370 (17%)

Query: 4   NMGEWEKNSLINVLLQGRESAKQLQIQLNLRTSSSSHDQTRGIMLVQKIISSYEKALSML 63
           N   WE+ +LI  L+QG E AKQL+  L   +S  + D     ML ++I+SS+EKAL +L
Sbjct: 3   NGWSWEQKTLITELIQGMELAKQLRAHLKATSSVETRD-----MLARRILSSFEKALLIL 57

Query: 64  NFCGSSSSTQEPQPPAGPVTESPTSLTGSPLSEDSDRDVKDPQ--EDVSKK--------- 112
           N  GS    Q     AG V ESP S+ GSP S+D D  VKD Q   + SKK         
Sbjct: 58  NCGGSMGQPQNAGVSAG-VPESPISINGSPRSDDFDGSVKDNQGYNEASKKRKNTPRWTD 116

Query: 113 ------------------SWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDED 154
                             SWRKYGQKDILGAKYPR YYRCTYRN Q C ATKQVQRSDED
Sbjct: 117 QVRVSTDNGLEGHHGDGFSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDED 176

Query: 155 PTIFEITYRGNHTCAQASNAILPPPTQPETKEPDTAAIEPQQHNYYQTTPQQQPEDALLN 214
           PT+FEITYRG H+CAQ + ++ P P + E K+ +T               QQQ + AL N
Sbjct: 177 PTVFEITYRGTHSCAQGNQSV-PSPEKQEKKQKNTNN----------NCQQQQSQQALFN 225

Query: 215 LRKGLKIVTEDLDVKPQQQSSIPPFHFPSPSVVIHPNFTGNFSPSFVSPQASEANNYTFS 274
               L++ TEDLD K      + PF FPS +        G+FSP F+SP   E  +Y+ S
Sbjct: 226 FHNSLRVNTEDLDNKEM----VSPFSFPSTNGCTKSE--GSFSP-FISPATLEPTHYSLS 278

Query: 275 TSPPSGMNNFQGNQNFQSSSQDSEVNEIISGAAAAAATSATNPPTVDLDFPFGNIEFDPN 334
              P  MNNF G QN Q    +S+  +IIS     A TSATN P VDLDF    ++ DP+
Sbjct: 279 ---PFQMNNFVGVQNLQ--HLESDFTDIIS-----ANTSATNSPIVDLDFSLDQVDLDPD 328

Query: 335 FTFDNLGFFS 344
           F FD+ GFFS
Sbjct: 329 FPFDSPGFFS 338

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053795|ref|XP_002297983.1| predicted protein [Populus trichocarpa] gi|222845241|gb|EEE82788.1| predicted protein [Populus trichocarpa]

 Score =  247 bits (631), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 166/370 (44%), Positives = 202/370 (54%), Gaps = 63/370 (17%)

Query: 4   NMGEWEKNSLINVLLQGRESAKQLQIQLNLRTSSSSHDQTRGIMLVQKIISSYEKALSML 63
           N   WE+ +LI  L+QG E AKQL+  LN  +S  + D     MLV++I+SSYEKAL +L
Sbjct: 3   NGWSWEQKTLITELIQGMELAKQLRAHLNATSSVETRD-----MLVRRILSSYEKALLIL 57

Query: 64  NFCGSSSSTQEPQPPAGPVTESPTSLTGSPLSEDSDRDVKDPQ--EDVSKK--------- 112
           N  GS    Q     AG V ESP S+ GS  S+D D  VKD Q   + SKK         
Sbjct: 58  NGGGSMGQPQNAGVSAG-VPESPRSINGSSRSDDFDGSVKDNQGYNEASKKRKTTPRWTD 116

Query: 113 ------------------SWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDED 154
                             SWRKYGQKDILGAKYPR YYRC+YRN Q C ATKQVQRSDED
Sbjct: 117 QVRVSTDNGLEGHHDDGFSWRKYGQKDILGAKYPRSYYRCSYRNTQNCWATKQVQRSDED 176

Query: 155 PTIFEITYRGNHTCAQASNAILPPPTQPETKEPDTAAIEPQQHNYYQTTPQQQPEDALLN 214
           PT+FEITYRG H+CA  + ++  P  Q           E ++ N      QQQ + AL N
Sbjct: 177 PTVFEITYRGTHSCAHGNQSVPSPEKQ-----------EKKRKNTNNNCQQQQSQQALFN 225

Query: 215 LRKGLKIVTEDLDVKPQQQSSIPPFHFPSPSVVIHPNFTGNFSPSFVSPQASEANNYTFS 274
               L++ TED D K      + PF FPS +        G+FSP F+SP   E  +Y+ S
Sbjct: 226 FHNSLRVNTEDFDNKEM----VCPFSFPSTNGCTKSE--GSFSP-FISPATPEPTHYSLS 278

Query: 275 TSPPSGMNNFQGNQNFQSSSQDSEVNEIISGAAAAAATSATNPPTVDLDFPFGNIEFDPN 334
              P  MNNF G QN Q    +S+  +IIS     A TSATN P VDLDF    +E  P+
Sbjct: 279 ---PFQMNNFVGVQNLQ--HLESDFTDIIS-----ANTSATNSPIVDLDFSLDQVELVPD 328

Query: 335 FTFDNLGFFS 344
           F FD+ GFFS
Sbjct: 329 FPFDSPGFFS 338

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	354
TAIR|locus:2128514	324	WRKY53 [Arabidopsis thaliana (	0.327	0.358	0.534	1.8e-42
TAIR|locus:2136093	313	WRKY41 [Arabidopsis thaliana (	0.257	0.290	0.608	1.2e-41
TAIR|locus:2167428	303	WRKY30 "WRKY DNA-binding prote	0.514	0.600	0.404	6.9e-31
TAIR|locus:2039119	295	WRKY46 "WRKY DNA-binding prote	0.686	0.823	0.334	4.8e-23
TAIR|locus:2064806	346	WRKY54 "WRKY DNA-binding prote	0.234	0.239	0.447	3.2e-19
TAIR|locus:2102539	294	WRKY70 "WRKY DNA-binding prote	0.556	0.670	0.321	1.4e-18
TAIR|locus:2064816	292	WRKY55 "WRKY DNA-binding prote	0.466	0.565	0.340	7.5e-18
TAIR|locus:2029919	259	WRKY65 "WRKY DNA-binding prote	0.285	0.389	0.415	1.2e-15
TAIR|locus:2195165	241	ABO3 "ABA overly sensitive mut	0.420	0.618	0.345	2.8e-15
TAIR|locus:2181052	263	WRKY62 "WRKY DNA-binding prote	0.415	0.558	0.325	9.4e-15

TAIR|locus:2128514 WRKY53 [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 1.8e-42, Sum P(2) = 1.8e-42
 Identities = 69/129 (53%), Positives = 87/129 (67%)

Query:    99 DRDVKDPQEDVSKKSWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIF 158
             +R ++ PQ+DV   SWRKYGQKDILGAK+PR YYRCT+R+ Q C ATKQVQRSD D T+F
Sbjct:   150 ERGLEGPQDDVF--SWRKYGQKDILGAKFPRSYYRCTHRSTQNCWATKQVQRSDGDATVF 207

Query:   159 EITYRGNHTCAQASNAILPPPTQPETKEPDTAAIEPQQHNYYQTTPQQQPEDALLNLRKG 218
             E+TYRG HTC+QA     PP   PE K  DT  ++P        T  Q+P+D L +L+  
Sbjct:   208 EVTYRGTHTCSQAITRT-PPLASPE-KRQDTR-VKPA------IT--QKPKDILESLKSN 256

Query:   219 LKIVTEDLD 227
             L + T+ LD
Sbjct:   257 LTVRTDGLD 265

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0031347 "regulation of defense response" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0010150 "leaf senescence" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0010193 "response to ozone" evidence=IEP

GO:0042542 "response to hydrogen peroxide" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2136093 WRKY41 [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
 Identities = 59/97 (60%), Positives = 71/97 (73%)

Query:    99 DRDVKDPQEDVSKKSWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIF 158
             +R ++ P +D+   SWRKYGQKDILGAK+PR YYRCT+RN Q C ATKQVQRSD DPTIF
Sbjct:   133 ERGLEGPHDDIF--SWRKYGQKDILGAKFPRSYYRCTFRNTQYCWATKQVQRSDGDPTIF 190

Query:   159 EITYRGNHTCAQASNAILPPPTQPETKEPDTAAIEPQ 195
             E+TYRG HTC+Q     +P P + ETK   T A+  Q
Sbjct:   191 EVTYRGTHTCSQG----IPLPEKRETKPKHTVAVNYQ 223

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2167428 WRKY30 "WRKY DNA-binding protein 30" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 85/210 (40%), Positives = 118/210 (56%)

Query:     1 MDRN--MGEWEK--NSLINVLLQGRESAKQLQIQLNLRTSSSSHDQTRGIMLVQKIISSY 56
             M++N   GEWEK  N +  ++++GR+ A Q          S+S  +TR   L +KI+ SY
Sbjct:     1 MEKNHSSGEWEKMKNEINELMIEGRDYAHQF--------GSASSQETRE-HLAKKILQSY 51

Query:    57 EKALSMLNFCGSSSSTQEP--QPPAGPVTESPTSLTGSPLSED--SDRDVKDPQEDVSKK 112
              K+L+++N+ G      +    P +    + P  +  S  S    S +    P   V + 
Sbjct:    52 HKSLTIMNYSGELDQVSQGGGSPKSDDSDQEPLVIKSSKKSMPRWSSKVRIAPGAGVDRT 111

Query:   113 -----SWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNHT 167
                  SWRKYGQKDILGAK+PRGYYRCTYR  QGC ATKQVQRSDE+  + EI+YRG H+
Sbjct:   112 LDDGFSWRKYGQKDILGAKFPRGYYRCTYRKSQGCEATKQVQRSDENQMLLEISYRGIHS 171

Query:   168 CAQASNAILPPPTQPETKEPDTAAIEPQQH 197
             C+QA+N     P Q    EP+    + Q+H
Sbjct:   172 CSQAANVGTTMPIQ--NLEPN----QTQEH 195

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0010193 "response to ozone" evidence=IEP

GO:0042542 "response to hydrogen peroxide" evidence=IEP

TAIR|locus:2039119 WRKY46 "WRKY DNA-binding protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 89/266 (33%), Positives = 121/266 (45%)

Query:     9 EKNSLINVLLQGRESAKQLQIQLNLRTSSSSHDQTRGIMLVQKIISSYEKALSMLNFCGS 68
             E+  +IN L  G+E A +L   L   TSS   ++T    L+  I+  Y+ A+ ML+F   
Sbjct:     4 EEKLVINELELGKELANRLMNNLK-HTSSVDSNKT----LISDILRIYQNAIFMLSFNQD 58

Query:    69 SSSTQEPQPPAGPVTESPTSLTGSPLSEDSDRDVK----DPQEDVSKKS---WRKYGQKD 121
              +  +      G   +S        +SE +   VK      QE+ S      WRKYGQK+
Sbjct:    59 KNILKRSLEIDGK--DSKNVFKKRKVSEKNTEKVKVFVATEQENGSIDDGHCWRKYGQKE 116

Query:   122 ILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNHTCAQASNAILPPPTQ 181
             I G+K PR YYRCT+R  Q CLA KQVQ+SD DP++FE+ Y GNHTC    N I  P T 
Sbjct:   117 IHGSKNPRAYYRCTHRFTQDCLAVKQVQKSDTDPSLFEVKYLGNHTC----NNITSPKTT 172

Query:   182 PETKEPDTAAIEPQQHNYYQTTPQQQPEDALLNLRKGLKIVTEDLDVKXXXXXXXXXXXX 241
                    T     + +  + T   +Q ED      + + I  EDL+ K            
Sbjct:   173 TNFSVSLTNTNIFEGNRVHVT---EQSEDMKPTKSEEVMISLEDLENKKNIFRTFSFSNH 229

Query:   242 XXXXXXXHPN-FTGNFSPSFVSPQAS 266
                      N F GNF    +SP  S
Sbjct:   230 EIENGVWKSNLFLGNFVED-LSPATS 254

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2064806 WRKY54 "WRKY DNA-binding protein 54" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 3.2e-19, Sum P(2) = 3.2e-19
 Identities = 38/85 (44%), Positives = 55/85 (64%)

Query:   102 VKDPQEDVSKKSWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEIT 161
             + + +    + +WRKYGQK+IL   +PR Y+RCT++  QGC ATKQVQ+ D+D  +F+IT
Sbjct:   145 IVEAKSSEDRYAWRKYGQKEILNTTFPRSYFRCTHKPTQGCKATKQVQKQDQDSEMFQIT 204

Query:   162 YRGNHTCAQASNAILPPPTQPETKE 186
             Y G HTC   +N      T+P  +E
Sbjct:   205 YIGYHTCT--ANDQTHAKTEPFDQE 227

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0031347 "regulation of defense response" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:1900056 "negative regulation of leaf senescence" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2102539 WRKY70 "WRKY DNA-binding protein 70" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 74/230 (32%), Positives = 106/230 (46%)

Query:     1 MDRNMGEWEKNSLINVLLQGRESAKQLQIQLNLRTSSSSHDQTRGIMLVQKIISSYEKAL 60
             MD N  +  K  ++N L++G +   QLQ QL  +  S   D      LV KI+  +   +
Sbjct:     1 MDTNKAK--KLKVMNQLVEGHDLTTQLQ-QLLSQPGSGLED------LVAKILVCFNNTI 51

Query:    61 SMLN-F--CGSSSSTQEPQPPAGPVTESPTSLTGSPLSEDSDRDVKDPQEDVSKK----- 112
             S+L+ F    SSSS    +       ++      S  S      VK  +    +K     
Sbjct:    52 SVLDTFEPISSSSSLAAVEGSQNASCDNDGKFEDSGDSRKRLGPVKGKRGCYKRKKRSET 111

Query:   113 ------------SWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEI 160
                         SWRKYGQK+IL AK+PR Y+RCT++  QGC ATKQVQ+ + +P +F I
Sbjct:   112 CTIESTILEDAFSWRKYGQKEILNAKFPRSYFRCTHKYTQGCKATKQVQKVELEPKMFSI 171

Query:   161 TYRGNHTCAQASNAILPPPTQPETKEPDTAAIEPQQHNYYQTTPQQQPED 210
             TY GNHTC   +NA    P        D   ++ + H     +   + ED
Sbjct:   172 TYIGNHTCN--TNA--ETPKSKTCDHHDEIFMDSEDHKSPSLSTSMKEED 217

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;RCA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009753 "response to jasmonic acid stimulus" evidence=IMP

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA;IMP

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0031347 "regulation of defense response" evidence=RCA;IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:1900056 "negative regulation of leaf senescence" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2064816 WRKY55 "WRKY DNA-binding protein 55" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 60/176 (34%), Positives = 87/176 (49%)

Query:    12 SLINVLLQGRESAKQLQIQLNLRTSSSSHDQTRGIMLVQ--KIISSYEKALSM-LNFCGS 68
             S+ N +L   E     +  L    S+SS   T  +   Q   +    E+ L+  +   G+
Sbjct:    80 SVANQMLMQMEPGLMQEYWLRYGGSTSSQG-TEAMFQTQLMAVDGGGERNLTAAVERSGA 138

Query:    69 SSSTQEPQPPAGPVTESPTSLTGSPLSEDSDRDVKDPQEDVSKKSWRKYGQKDILGAKYP 128
             S S+   Q       E  T L  +  + ++D     P +D    +WRKYGQK+ILG+++P
Sbjct:   139 SGSSTPRQRRRKDEGEEQTVLVAALRTGNTDL----PPDD--NHTWRKYGQKEILGSRFP 192

Query:   129 RGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNHTCAQASNAILPPPTQPET 184
             R YYRCT++    C A KQVQR ++DP  F +TYRG+HTC   S A       P T
Sbjct:   193 RAYYRCTHQKLYNCPAKKQVQRLNDDPFTFRVTYRGSHTCYN-STAPTASSATPST 247

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2029919 WRKY65 "WRKY DNA-binding protein 65" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 1.2e-15, P = 1.2e-15
 Identities = 44/106 (41%), Positives = 58/106 (54%)

Query:    93 PLSE-DSDRDVKDPQEDVSKKSWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRS 151
             P+ E +  R   D        +WRKYGQK I G+ YPRGYYRC+  + +GC A KQV+RS
Sbjct:    57 PMKEMEGSRHKGDTTPPSDSWAWRKYGQKPIKGSPYPRGYYRCS--STKGCPARKQVERS 114

Query:   152 DEDPTIFEITYRG--NHTCAQASNAILPPPTQPETKEPDTAAIEPQ 195
              +DPT+  ITY    NH     S+    P  +PE K      +EP+
Sbjct:   115 RDDPTMILITYTSEHNHPWPLTSSTRNGPKPKPEPKPEPEPEVEPE 160

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015698 "inorganic anion transport" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2195165 ABO3 "ABA overly sensitive mutant 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 2.8e-15, P = 2.8e-15
 Identities = 55/159 (34%), Positives = 75/159 (47%)

Query:    14 INVLLQGRESAKQLQIQL-NLRTSSSSHDQTRGIMLVQKIISSYEKALSMLNFCGSSSST 72
             +  LL G+  A  L+  L N + SS S +      L+  I+ S+  ALS +N        
Sbjct:    10 VAALLHGQGCANILKTVLDNCKVSSVSTEP-----LINTILDSFSLALSSVNSPNRQPHH 64

Query:    73 QEP-QPPAG--PVTESPTSLTGSPLSEDSDRDVKDPQEDVSKKSWRKYGQKDILGAKYPR 129
             +   +  AG  P   S   + G    E    D  +P+ D    +WRKYGQK I  + Y R
Sbjct:    65 ESSSRDMAGLVPQRSSKKKICGVKGLEIYRDDSPNPRLD-DGFTWRKYGQKTIKTSLYQR 123

Query:   130 GYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNHTC 168
              YYRC Y   Q C ATK+VQ   + P ++  TY G HTC
Sbjct:   124 CYYRCAYAKDQNCYATKRVQMIQDSPPVYRTTYLGQHTC 162

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

TAIR|locus:2181052 WRKY62 "WRKY DNA-binding protein 62" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 9.4e-15, P = 9.4e-15
 Identities = 53/163 (32%), Positives = 75/163 (46%)

Query:    17 LLQGRESAKQLQIQLNLRTSSSSHDQTRGIMLVQKIISSYEKALSML----NFCGSSSST 72
             LL G   A QL I     + SS   +     L + ++  +  ALS+L    +     S+ 
Sbjct:    12 LLHGHGCANQLLIMDQTESDSSMERED----LAKSVLHCFSDALSILIDTNDHQDDQSNN 67

Query:    73 QEPQPPAGPVTES---PTSLTG--SPLSEDSDRDVKDPQEDVSKKS--WRKYGQKDILGA 125
               PQ  + PV ES   P    G  + ++E SD    +    +      WRKYGQK I  +
Sbjct:    68 SSPQD-SSPVLESSRKPLHKRGRKTSMAESSDYHRHESSTPIYHDGFLWRKYGQKQIKES 126

Query:   126 KYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNHTC 168
             +Y R YY+C Y   Q C A KQVQ+   +P ++  TY G H C
Sbjct:   127 EYQRSYYKCAYTKDQNCEAKKQVQKIQHNPPLYSTTYFGQHIC 169

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009863 "salicylic acid mediated signaling pathway" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	354
smart00774	59	smart00774, WRKY, DNA binding domain	1e-32
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	2e-28

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  116 bits (292), Expect = 1e-32
 Identities = 37/56 (66%), Positives = 42/56 (75%), Gaps = 2/56 (3%)

Query: 113 SWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNHTC 168
            WRKYGQK I G+ YPR YYRCTY   QGC A KQVQRSD+DP++ E+TY G HT 
Sbjct: 6   QWRKYGQKVIKGSPYPRSYYRCTY--TQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  104 bits (262), Expect = 2e-28
 Identities = 31/56 (55%), Positives = 37/56 (66%), Gaps = 3/56 (5%)

Query: 113 SWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNHTC 168
           +WRKYGQK + G+ +PR YYRCT     GC   KQV+RS +DP I EITY G H  
Sbjct: 6   NWRKYGQKPVKGSPFPRSYYRCTSP---GCPVKKQVERSSDDPQIVEITYEGEHNH 58

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	354
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.94
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.93
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	88.5

>smart00774 WRKY DNA binding domain

Probab=99.94  E-value=2.4e-27  Score=180.74  Aligned_cols=57  Identities=63%  Similarity=1.184  Sum_probs=54.5

Q ss_pred             cccchhcccccccCCCCCCceeEEeeccCCCCCcccceeeecCCCCCEEEEEeeeeecC
Q 045032          110 SKKSWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNHTC  168 (354)
Q Consensus       110 ~kk~WRKYGQK~I~gs~~pRsYYrCt~~~~~gC~a~KqVQr~~~d~~~~~vtY~G~Htc  168 (354)
                      ++++|||||||.|+|+++||+|||||+  ++||+|+|+|||+++|+.+++|||+|+|||
T Consensus         3 DGy~WRKYGQK~ikgs~~pRsYYrCt~--~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        3 DGYQWRKYGQKVIKGSPFPRSYYRCTY--SQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CcccccccCcEecCCCcCcceEEeccc--cCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            367999999999999999999999998  589999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.93  E-value=3.8e-27  Score=179.84  Aligned_cols=57  Identities=58%  Similarity=1.073  Sum_probs=50.9

Q ss_pred             cccchhcccccccCCCCCCceeEEeeccCCCCCcccceeeecCCCCCEEEEEeeeeecCC
Q 045032          110 SKKSWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNHTCA  169 (354)
Q Consensus       110 ~kk~WRKYGQK~I~gs~~pRsYYrCt~~~~~gC~a~KqVQr~~~d~~~~~vtY~G~Htc~  169 (354)
                      ++++|||||||.|+|+++||+||||++   .+|+|+|+|||+.+|+.+++|||+|+|||+
T Consensus         3 Dgy~WRKYGqK~i~g~~~pRsYYrCt~---~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen    3 DGYRWRKYGQKNIKGSPYPRSYYRCTH---PGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             SSS-EEEEEEEEETTTTCEEEEEEEEC---TTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             CCCchhhccCcccCCCceeeEeeeccc---cChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            367999999999999999999999999   499999999999999999999999999996

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.50  E-value=0.51  Score=34.15  Aligned_cols=38  Identities=26%  Similarity=0.470  Sum_probs=18.4

Q ss_pred             CCceeEEeeccCCCCCcccceeeecCCCCCEEEEEeeeeecC
Q 045032          127 YPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNHTC  168 (354)
Q Consensus       127 ~pRsYYrCt~~~~~gC~a~KqVQr~~~d~~~~~vtY~G~Htc  168 (354)
                      ....|+||+.....+|+|+=.+.  . +...+... .++|||
T Consensus        25 ~~~~~WrC~~~~~~~C~a~~~~~--~-~~~~~~~~-~~~HnH   62 (62)
T PF04500_consen   25 DGKTYWRCSRRRSHGCRARLITD--A-GDGRVVRT-NGEHNH   62 (62)
T ss_dssp             SS-EEEEEGGGTTS----EEEEE-----TTEEEE--S---SS
T ss_pred             CCcEEEEeCCCCCCCCeEEEEEE--C-CCCEEEEC-CCccCC
Confidence            45689999998888999976665  2 22333333 389997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	354
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		1e-08
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		1e-07

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 114 WRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNH 166
           WRKYGQK + G+ YPR YYRC+     GC   K V+RS  D  +   TY G H
Sbjct: 20  WRKYGQKSVKGSPYPRSYYRCS---SPGCPVKKHVERSSHDTKLLITTYEGKH 69

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 114 WRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNH 166
           WRKYGQK + G  YPR YY+CT     GC   K V+R+  DP     TY G H
Sbjct: 23  WRKYGQKVVKGNPYPRSYYKCT---TPGCGVRKHVERAATDPKAVVTTYEGKH 72

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	354
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	1e-23
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	1e-23

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score = 91.7 bits (228), Expect = 1e-23
 Identities = 26/56 (46%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 113 SWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNHTC 168
            WRKYGQK + G+ YPR YYRC+     GC   K V+RS  D  +   TY G H  
Sbjct: 19  RWRKYGQKSVKGSPYPRSYYRCSS---PGCPVKKHVERSSHDTKLLITTYEGKHDH 71

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score = 91.7 bits (228), Expect = 1e-23
 Identities = 26/56 (46%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 113 SWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNHTC 168
            WRKYGQK + G  YPR YY+CT     GC   K V+R+  DP     TY G H  
Sbjct: 22  RWRKYGQKVVKGNPYPRSYYKCTTP---GCGVRKHVERAATDPKAVVTTYEGKHNH 74

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	354
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	99.94
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	99.94

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=99.94  E-value=8.7e-28  Score=190.22  Aligned_cols=60  Identities=43%  Similarity=0.898  Sum_probs=56.6

Q ss_pred             cccchhcccccccCCCCCCceeEEeeccCCCCCcccceeeecCCCCCEEEEEeeeeecCCCCC
Q 045032          110 SKKSWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNHTCAQAS  172 (354)
Q Consensus       110 ~kk~WRKYGQK~I~gs~~pRsYYrCt~~~~~gC~a~KqVQr~~~d~~~~~vtY~G~Htc~~~~  172 (354)
                      ++++|||||||.|+|++|||+|||||+   +||+|+|+|||+++||.+++|||+|+|||..+.
T Consensus        16 DGy~WRKYGQK~ikgs~~PRsYYrCt~---~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A           16 DGYRWRKYGQKSVKGSPYPRSYYRCSS---PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             CSSCEEEEEEECCTTCSSCEEEEEECS---TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CCchhhhCcccccCCCCCceeEeEcCC---CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            478999999999999999999999997   799999999999999999999999999997653

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=99.94  E-value=1.3e-27  Score=189.94  Aligned_cols=59  Identities=44%  Similarity=0.866  Sum_probs=56.3

Q ss_pred             cccchhcccccccCCCCCCceeEEeeccCCCCCcccceeeecCCCCCEEEEEeeeeecCCCC
Q 045032          110 SKKSWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNHTCAQA  171 (354)
Q Consensus       110 ~kk~WRKYGQK~I~gs~~pRsYYrCt~~~~~gC~a~KqVQr~~~d~~~~~vtY~G~Htc~~~  171 (354)
                      ++++|||||||.|+|++|||+|||||+   +||+|+|+|||+.+||.+++|||+|+|||..|
T Consensus        19 DGy~WRKYGQK~ikgs~~PRsYYrCt~---~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   77 (78)
T 1wj2_A           19 DGYRWRKYGQKVVKGNPYPRSYYKCTT---PGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   77 (78)
T ss_dssp             SSSCBCCCEEECCTTCSSCEEEEEEEC---SSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             CCchhhhCcccccCCCcCeeEEeecCc---CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence            478999999999999999999999998   79999999999999999999999999999765

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	354
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	2e-23

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 89.9 bits (223), Expect = 2e-23
 Identities = 26/60 (43%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 113 SWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNHTCAQAS 172
            WRKYGQK + G  YPR YY+CT     GC   K V+R+  DP     TY G H     +
Sbjct: 15  RWRKYGQKVVKGNPYPRSYYKCTT---PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	354
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	99.95

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.95  E-value=1.1e-28  Score=191.06  Aligned_cols=60  Identities=43%  Similarity=0.858  Sum_probs=56.6

Q ss_pred             cccchhcccccccCCCCCCceeEEeeccCCCCCcccceeeecCCCCCEEEEEeeeeecCCCCC
Q 045032          110 SKKSWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNHTCAQAS  172 (354)
Q Consensus       110 ~kk~WRKYGQK~I~gs~~pRsYYrCt~~~~~gC~a~KqVQr~~~d~~~~~vtY~G~Htc~~~~  172 (354)
                      ++++|||||||.|+|+++||+||||++   +||+|+|+|||+.+||.+++|||+|+|||+.|+
T Consensus        12 DGy~WRKYGQK~ikgs~~pRsYYrCt~---~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_          12 DGYRWRKYGQKVVKGNPYPRSYYKCTT---PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             SSSCBCCCEEECCTTCSSCEEEEEEEC---SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             CCcEecccCceeccCCCCceEEEEccc---cCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            478999999999999999999999998   799999999999999999999999999997664