Citrus Sinensis ID: 045083

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550------
Protein Sequence
MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRGTFKPQEIQELSKNVGRGQYPNGILRVQTEKEPVDEEALKEMQSLHTVVAALIATVTFAAGFTLPGGYWGKEGPIPGTPILIKNAGFRAFVVSDVIAMVLSVSAIFIYFLTPAKTLRQTKFLSDMPHNFIMVSLLAMVVAFITGTYAVLAPSAGLSVATCVLGSSFILFAFANTFMLARGLYQRMFGNN
Secondary Structure (PSIPRED)
ccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHccccccHHHHHHcccccHHHHHHHHHHcccHHccccccccHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccHHHHHHcccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccHHHHHHccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHcccccccEEEEEcccccccHHHHccccHHHHHHHHHcHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHcHHHHEEEEEEccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccEcccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MDRKLYEAAakgdiepfREIARDELESIVTDVMKNTVLHVNIMRshltlqteegeissesTEFVEQILDLCPSllfqanakgdsplhlaAKKGHTAIVEFLIVFANrqpidlerGVESAARQILKMTneeqntplheavrlRSVDVVKILIKadphvsysanrnsETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTneeqntplheavrLRRVDVVKILIkadphvpysanrnsetpLYMAVANGSAEIVAEILQNCPESAARQMLEKTneeqntplheavrLRSVDVAKILIeadphvpysanrnsetplymAAANGSVKIVAKILqkcpspahegpdgktALHAAVYTYPTDILERVLivrgtfkpqEIQELSknvgrgqypngilrvqtekepvDEEALKEMQSLHTVVAALIATVTFAagftlpggywgkegpipgtpiliknagfRAFVVSDVIAMVLSVSAIFIYFLtpaktlrqtkflsdmphnfIMVSLLAMVVAFITGTYavlapsaglSVATCVLGSSFILFAFANTFMLARGLYQRMFGNN
Flexible Loop (DISEMBL)
mdrklyeaaakgdiepfreIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMtneeqntplheavrlrsVDVVKILIKadphvsysanrnSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTneeqntplheavrlrrVDVVKILIkadphvpysanrnsETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTneeqntplheavrlRSVDVAKILIEadphvpysanrnSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRGTFKPQEIQelsknvgrgqypnGILRVQTEKEPVDEEALKEMQSLHTVVAALIATVTFAAGFTLPGGYWGKEGPIPGTPILIKNAGFRAFVVSDVIAMVLSVSAIFIYFLTPAKTLRQTKFLSDMPHNFIMVSLLAMVVAFITGTYAVLAPSAGLSVATCVLGSSFILFAFANTFMLARGLYQRMFGNN
Low Complexity Region (SEG)
MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQteegeissesteFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRGTFKPQEIQELSKNVGRGQYPNGILRVQTEKEPVDEEALKEMQSLHTVVAALIATVTFAAGFTLPGGYWGKEGPIPGTPILIKNAGFRAFVVSDVIAMVLSVSAIFIYFLTPAKTLRQTKFLSDMPHNFIMVSLLAMVVAFITGTYAVLAPSAGLSVATCVLGSSFILFAFANTFMLARGLYQRMFGNN
Disordered region (IsUnstruct)
****************FREIARDELESIVTDVMKNTVLHVNIMRSHLTLQT*********TEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVE*****I***********LHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNC*********************EAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNC**********************AVRLRSVDVAKILIEADPHVPYSA*****TPLYMAAANGSVKIVAKILQKC**********KTALHAAVYTYPTDILERVLIVRGTFKPQEIQEL***VGRGQYPNGILR****************QSLHTVVAALIATVTFAAGFTLPGGYWGKEGPIPGTPILIKNAGFRAFVVSDVIAMVLSVSAIFIYFLTPAKTLRQTKFLSDMPHNFIMVSLLAMVVAFITGTYAVLAPSAGLSVATCVLGSSFILFAFANTFMLARGLYQRMF***
Disordered Region (DISOPRED)
MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRGTFKPQEIQELSKNVGRGQYPN*******************MQSLHTVVAALIATVTFAAGFTLPGGYWGKEGPIPGTPILIKNAGFRAFVVSDVIAMVLSVSAIFIYFLTPAKTLRQTKFLSDMPHNFIMVSLLAMVVAFITGTYAVLAPSAGLSVATCVLGSSFILFAFANTFMLARGLYQRMFG**
Disordered Region (DISEMBL)
MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTL*************FVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRGTFKPQEIQELSKNVGRGQYPNGILRVQTEKEPVDEEALKEMQSLHTVVAALIATVTFAAGFTLPGGYWGKEGPIPGTPILIKNAGFRAFVVSDVIAMVLSVSAIFIYFLTPAKTLRQTKFLSDMPHNFIMVSLLAMVVAFITGTYAVLAPSAGLSVATCVLGSSFILFAFANTFMLARGLYQRMFGNN
Disordered Region (DISPRO)
MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQP**LERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRGTFKPQEIQELSKNVGRGQYPNGILRVQTEKEPVDEEALKEMQSLHTVVAALIATVTFAAGFTLPGGYWGKEGPIPGTPILIKNAGFRAFVVSDVIAMVLSVSAIFIYFLTPAKTLRQTKFLSDMPHNFIMVSLLAMVVAFITGTYAVLAPSAGLSVATCVLGSSFILFAFANTFMLARGLYQRMFGNN
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRGTFKPQEIQELSKNVGRGQYPNGILRVQTEKEPVDEEALKEMQSLHTVVAALIATVTFAAGFTLPGGYWGKEGPIPGTPILIKNAGFRAFVVSDVIAMVLSVSAIFIYFLTPAKTLRQTKFLSDMPHNFIMVSLLAMVVAFITGTYAVLAPSAGLSVATCVLGSSFILFAFANTFMLARGLYQRMFGNN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	556	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.796	0.750	0.232	1e-24
P16157	1881	Ankyrin-1 OS=Homo sapiens	yes	no	0.467	0.138	0.307	1e-21
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.771	0.818	0.245	3e-21
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	no	0.419	0.058	0.311	4e-19
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	yes	no	0.419	0.059	0.311	6e-19
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.455	0.129	0.288	4e-18
Q02357	1862	Ankyrin-1 OS=Mus musculus	no	no	0.467	0.139	0.290	6e-18
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	no	0.455	0.057	0.285	7e-17
Q7T163	1672	Kinase D-interacting subs	no	no	0.406	0.135	0.290	1e-14
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.660	0.689	0.222	2e-14

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score =  115 bits (287), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 121/520 (23%), Positives = 229/520 (44%), Gaps = 77/520 (14%)

Query: 2   DRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSEST 61
           D +L+ AA +GD+   ++I +D                   + S +     EG +S E  
Sbjct: 75  DTELHLAAQRGDLAAVQQILKD-------------------INSQM-----EGILSGE-- 108

Query: 62  EFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAAR 121
           EF  ++ ++  S++ + N  G++ L  AA KGH  +V+ L+ +++R         ES A+
Sbjct: 109 EFDAEVAEIRASIVNEVNELGETALFTAADKGHLDVVKELLKYSSR---------ESIAK 159

Query: 122 QILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIV 181
           +     N     PLH A       +V++L+  D  +S +   ++ T L  A   G  E+V
Sbjct: 160 K-----NRSGYDPLHIAAIQGHHAIVEVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVV 214

Query: 182 AEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETP 241
            ++L     S A  +LE +       LH A R   V+V+K L+  DP +    ++  +T 
Sbjct: 215 NQLL-----SKAGNLLEISRSNNKNALHLAARQGHVEVIKALLSKDPQLARRIDKKGQTA 269

Query: 242 LYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADP 301
           L+MAV   S+E+V  +L   P      ++ + ++  NT LH A R +  ++ ++L+    
Sbjct: 270 LHMAVKGQSSEVVKLLLDADP-----AIVMQPDKSCNTALHVATRKKRAEIVELLLSLPD 324

Query: 302 HVPYSANRNSETPLYMAA----ANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPT 357
               +  R+ +T L +A     +  S  I   + +     A+E    +  L + V     
Sbjct: 325 TNANTLTRDHKTALDIAEGLPLSEESSYIKECLARSGALRANELNQPRDELRSTVTQIKN 384

Query: 358 DILERVLIVRGTFKPQEIQELSKNVGRGQYPNGILRVQTEKEPVDEEALKEMQSLHTVVA 417
           D+           + ++ +  +KNV           +  E   +  E +    +  TVVA
Sbjct: 385 DV---------HIQLEQTKRTNKNVH---------NISKELRKLHREGINNATNSVTVVA 426

Query: 418 ALIATVTFAAGFTLPGGYWGKEGPIPGTPILIKNAGFRAFVVSDVIAMVLSVSAIFIYFL 477
            L ATV FAA FT+PGG         G+ +++  A F+ F + + +A+  S++ + +   
Sbjct: 427 VLFATVAFAAIFTVPGG-----DNNDGSAVVVGRASFKIFFIFNALALFTSLAVVVVQIT 481

Query: 478 TPAKTLRQTKFLSDMPHNFIMVSLLAMVVAFITGTYAVLA 517
                 +  K + ++ +  + ++ +   VAF+  +Y V+ 
Sbjct: 482 LVRGETKAEKRVVEVINKLMWLASMCTSVAFLASSYIVVG 521

Arabidopsis thaliana (taxid: 3702)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score =  105 bits (261), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 148/299 (49%), Gaps = 39/299 (13%)

Query: 82  GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
           G +PLH+A KK H  ++E L          L+ G        +    E   TPLH A  +
Sbjct: 371 GFTPLHIACKKNHVRVMELL----------LKTGAS------IDAVTESGLTPLHVASFM 414

Query: 142 RSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEK 199
             + +VK L++  A P+VS   N   ET L+MA   G  E+   +LQN  +  A+     
Sbjct: 415 GHLPIVKNLLQRGASPNVS---NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA---- 467

Query: 200 TNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIVAEI 257
             ++  TPLH A R+   ++VK+L++  A+P++  +A     TPL++A   G  E V  +
Sbjct: 468 --KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA---GHTPLHIAAREGHVETVLAL 522

Query: 258 LQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYM 317
           L+   E++   M +K      TPLH A +   V VA++L+E D H P +A +N  TPL++
Sbjct: 523 LEK--EASQACMTKKGF----TPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHV 575

Query: 318 AAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRGTFKPQEIQ 376
           A  + ++ IV  +L +  SP     +G T LH A      ++   +L   G+   + +Q
Sbjct: 576 AVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ 634

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score =  103 bits (258), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 119/484 (24%), Positives = 219/484 (45%), Gaps = 55/484 (11%)

Query: 81  KGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVR 140
           + D+PLH A ++G T ++         + I    GVE   +++L   N+   T L+ A  
Sbjct: 16  RDDTPLHTAVREGKTDLL--------LEMIGEHDGVE--LKELLAEQNQSGETALYVAAE 65

Query: 141 LRSVDVVKILIK-ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEK 199
               D+VKIL+K +D  ++ +  +N     ++A  NG+ +++  +++  P+      L  
Sbjct: 66  YGYTDMVKILMKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPE------LSF 119

Query: 200 T-NEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEIL 258
           T +  + T LH A      ++V  L+     +   A  N +T L+ A  NG   IV +++
Sbjct: 120 TFDSSKTTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGKTALHSAARNGHTVIVKKLI 179

Query: 259 QNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMA 318
           +         M+ + +++  T LH AV+ ++ ++  +L+EAD  +  SA+    TPL++A
Sbjct: 180 EK-----KAGMVTRVDKKGQTALHMAVKGQNTEIVDVLMEADGSLINSADNKGNTPLHIA 234

Query: 319 AANGSVKIVAKILQKCP-SPAHEGPDGKTALHAAVYTYPTDI---LERVLIVRG-TFKPQ 373
                 +IV  +L+ C  S       G+TAL  A  T   +I   L+++ +    + KP 
Sbjct: 235 VRKNRAEIVQTVLKYCEVSRVAVNKSGETALDIAEKTGLHEIVPLLQKIGMQNARSIKPA 294

Query: 374 E----------IQELSKNVGR---------GQYPNGILRVQTEKEPVDEEALKEMQSLHT 414
           E          ++E    +G          G+    I  +      +  E L    +  T
Sbjct: 295 EKVEPSGSSRKLKETVSEIGHEVHTQLEQTGRTRREIQGIAKRVNKMHTEGLNNAINSTT 354

Query: 415 VVAALIATVTFAAGFTLPGGYWG--KEGPIPGTPILIKNAG----FRAFVVSDVIAMVLS 468
           +VA LIATV FAA F +PG Y    K+ P PG  +    A     F  FVV D  A+ +S
Sbjct: 355 LVAILIATVAFAAIFNVPGQYTDDPKDVP-PGYSLGEARAAPRPEFLIFVVFDSFALFIS 413

Query: 469 VSAIFIYFLTPAKTLRQTKFLSDMPHNFIMVSLLAMVVAFITGTYAVLAPSAG-LSVATC 527
           ++ + +         R  K +  + +  + ++ + + VAF++ ++ V+      L+V   
Sbjct: 414 LAVVVVQTSVVVIERRAKKQMMAIINKLMWMACIMISVAFVSLSFVVVGEKEKPLAVGVT 473

Query: 528 VLGS 531
            +G+
Sbjct: 474 AIGA 477

Arabidopsis thaliana (taxid: 3702)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 97.1 bits (240), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 137/276 (49%), Gaps = 43/276 (15%)

Query: 82  GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
           G +PLH+A KK    ++E L+ +        E G+                TP+H A  +
Sbjct: 398 GFTPLHIACKKNRIKVMELLVKYGASIQAITESGL----------------TPIHVAAFM 441

Query: 142 RSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEK 199
             +++V +L++  A P V+   N   ET L+MA   G  E+V  +L+N     AR     
Sbjct: 442 GHLNIVLLLLQNGASPDVT---NIRGETALHMAARAGQVEVVRCLLRNGALVDARAR--- 495

Query: 200 TNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQ 259
              E+ TPLH A RL + ++V++L++   H P +A  N  TPL+++   G  ++ + +L+
Sbjct: 496 ---EEQTPLHIASRLGKTEIVQLLLQHMAH-PDAATTNGYTPLHISAREGQVDVASVLLE 551

Query: 260 NCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE----ADPHVPYSANRNSETPL 315
                AA  +  K      TPLH A +  S+DVAK+L++    AD     SA +N  TPL
Sbjct: 552 A---GAAHSLATKKG---FTPLHVAAKYGSLDVAKLLLQRRAAAD-----SAGKNGLTPL 600

Query: 316 YMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAA 351
           ++AA   + K+   +L+K  SP     +G T LH A
Sbjct: 601 HVAAHYDNQKVALLLLEKGASPHATAKNGYTPLHIA 636

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score = 96.3 bits (238), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 137/276 (49%), Gaps = 43/276 (15%)

Query: 82  GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
           G +PLH+A KK    ++E L+ +        E G+                TP+H A  +
Sbjct: 398 GFTPLHIACKKNRIKVMELLVKYGASIQAITESGL----------------TPIHVAAFM 441

Query: 142 RSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEK 199
             +++V +L++  A P V+   N   ET L+MA   G  E+V  +L+N     AR     
Sbjct: 442 GHLNIVLLLLQNGASPDVT---NIRGETALHMAARAGQVEVVRCLLRNGALVDARAR--- 495

Query: 200 TNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQ 259
              E+ TPLH A RL + ++V++L++   H P +A  N  TPL+++   G  ++ + +L+
Sbjct: 496 ---EEQTPLHIASRLGKTEIVQLLLQHMAH-PDAATTNGYTPLHISAREGQVDVASVLLE 551

Query: 260 NCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE----ADPHVPYSANRNSETPL 315
                AA  +  K      TPLH A +  S+DVAK+L++    AD     SA +N  TPL
Sbjct: 552 A---GAAHSLATKKG---FTPLHVAAKYGSLDVAKLLLQRRAAAD-----SAGKNGLTPL 600

Query: 316 YMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAA 351
           ++AA   + K+   +L+K  SP     +G T LH A
Sbjct: 601 HVAAHYDNQKVALLLLEKGASPHATAKNGYTPLHIA 636

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 93.6 bits (231), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 140/291 (48%), Gaps = 38/291 (13%)

Query: 79  NAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPL 135
           NAK   G +PLH+A KK    ++E L          L+ G        ++   E   TP+
Sbjct: 377 NAKALNGFTPLHIACKKNRIRVMELL----------LKHGAS------IQAVTESGLTPI 420

Query: 136 HEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAA 193
           H A  +  V++V  L+   A P+ +   N   ET L+MA  +G AE+V  ++Q+  Q   
Sbjct: 421 HVAAFMGHVNIVSQLMHHGASPNTT---NVRGETALHMAARSGQAEVVRYLVQDGAQ--- 474

Query: 194 RQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEI 253
              +E   ++  TPLH + RL + D+V+ L++     P +A  +  TPL++A   G  ++
Sbjct: 475 ---VEAKAKDDQTPLHISARLGKADIVQQLLQQGAS-PNAATTSGYTPLHLAAREGHEDV 530

Query: 254 VAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSET 313
            A +L +         L  T ++  TPLH A +   ++VA +L++     P +A ++  T
Sbjct: 531 AAFLLDHGAS------LSITTKKGFTPLHVAAKYGKLEVASLLLQKSAS-PDAAGKSGLT 583

Query: 314 PLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVL 364
           PL++AA   + K+   +L +  SP     +G T LH A      DI   +L
Sbjct: 584 PLHVAAHYDNQKVALLLLDQGASPHAAAKNGYTPLHIAAKKNQMDIATSLL 634

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score = 92.8 bits (229), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 141/299 (47%), Gaps = 39/299 (13%)

Query: 82  GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
           G +PLH+A KK H  ++E L          L+ G        +    E   TPLH A  +
Sbjct: 367 GFTPLHIACKKNHIRVMELL----------LKTGAS------IDAVTESGLTPLHVASFM 410

Query: 142 RSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEK 199
             + +VK L++  A P+VS   N   ET L+MA   G  E+   +LQ       +     
Sbjct: 411 GHLPIVKNLLQRGASPNVS---NVKVETPLHMAARAGHTEVAKYLLQ------NKAKANA 461

Query: 200 TNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIVAEI 257
             ++  TPLH A R+    +VK+L++  A P++  +A     TPL+ A   G  +    +
Sbjct: 462 KAKDDQTPLHCAARIGHTGMVKLLLENGASPNLATTA---GHTPLHTAAREGHVDTALAL 518

Query: 258 LQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYM 317
           L+   E++   M +K      TPLH A +   V +A++L+E D H P +A +N  TPL++
Sbjct: 519 LEK--EASQACMTKKGF----TPLHVAAKYGKVRLAELLLEHDAH-PNAAGKNGLTPLHV 571

Query: 318 AAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRGTFKPQEIQ 376
           A  + ++ IV  +L +  SP     +G T LH A      ++   +L   G+   + +Q
Sbjct: 572 AVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQIEVARSLLQYGGSANAESVQ 630

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 89.4 bits (220), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 140/291 (48%), Gaps = 38/291 (13%)

Query: 79  NAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPL 135
           NAK   G +PLH+A KK    ++E L          L+ G        ++   E   TP+
Sbjct: 394 NAKALNGFTPLHIACKKNRIKVMELL----------LKHGAS------IQAVTESGLTPI 437

Query: 136 HEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAA 193
           H A  +  V++V  L+   A P+ +   N   ET L+MA  +G AE+V  ++Q+  Q   
Sbjct: 438 HVAAFMGHVNIVSQLMHHGASPNTT---NVRGETALHMAARSGQAEVVRYLVQDGAQ--- 491

Query: 194 RQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEI 253
              +E   ++  TPLH + RL + D+V+ L++     P +A  +  TPL+++   G  ++
Sbjct: 492 ---VEAKAKDDQTPLHISARLGKADIVQQLLQQGAS-PNAATTSGYTPLHLSAREGHEDV 547

Query: 254 VAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSET 313
            A +L +         L  T ++  TPLH A +   ++VA +L++     P +A ++  T
Sbjct: 548 AAFLLDHG------ASLSITTKKGFTPLHVAAKYGKLEVANLLLQKSAS-PDAAGKSGLT 600

Query: 314 PLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVL 364
           PL++AA   + K+   +L +  SP     +G T LH A      DI   +L
Sbjct: 601 PLHVAAHYDNQKVALLLLDQGASPHAAAKNGYTPLHIAAKKNQMDIATTLL 651

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|Q7T163|KDIS_DANRE Kinase D-interacting substrate of 220 kDa OS=Danio rerio GN=kidins220 PE=2 SV=2

 Score = 82.0 bits (201), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 130/258 (50%), Gaps = 32/258 (12%)

Query: 78  ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
           ++  G +PL  AA+KGH   V  L+   N   +D E G  S              T L  
Sbjct: 167 SDKYGTTPLIWAARKGHYDCVMHLL--ENGADVDQE-GANSM-------------TALIV 210

Query: 138 AVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQML 197
           AV+    +VVK L+K +P+V+ + +++  T L +A   G  EIV ++L       A   +
Sbjct: 211 AVKGGYTEVVKELLKRNPNVNMT-DKDGNTALMIAAKEGYTEIVQDLLD------AGTYV 263

Query: 198 EKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEI 257
              +   +T L  AVR   V++V+ L+     +      N +T LY AV  G+A +V +I
Sbjct: 264 NIPDRSGDTVLIGAVRGGHVEIVRALLHKYADIDIRGQEN-KTALYWAVEKGNATMVRDI 322

Query: 258 LQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYM 317
           LQ  P++      E T ++  TPL +A ++RS++V ++L++    V  + ++  +TPL++
Sbjct: 323 LQCNPDT------ETTTKDSETPLIKATKMRSIEVVELLLDKGAKVS-AVDKRGDTPLHI 375

Query: 318 AAANGSVKIVAKILQKCP 335
            A  G  + +A++L + P
Sbjct: 376 -AIRGRSRRLAELLLRNP 392

Downstream target for both neurotrophin and ephrin receptors.

Danio rerio (taxid: 7955)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 81.3 bits (199), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 100/450 (22%), Positives = 181/450 (40%), Gaps = 83/450 (18%)

Query: 162 NRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVK 221
           N   ET +Y++    +AE + +I +   + ++ + ++  ++      H A +   + +VK
Sbjct: 56  NDAGETAVYIS----AAENLEDIFRYLIRFSSLETVKIRSKSDMNAFHVAAKRGHLGIVK 111

Query: 222 ILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPL 281
            L++  P +    + ++ +PLY A      EIV  +L   P  A   M+ + N +  T L
Sbjct: 112 ELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCA---MIVRKNGK--TSL 166

Query: 282 HEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHE- 340
           H A R   + + K LIE D  +    ++  +T L+MA    S+++V +ILQ   +  +E 
Sbjct: 167 HTAGRYGLLRIVKALIEKDAAIVGVKDKKGQTALHMAVKGRSLEVVEEILQADYTILNER 226

Query: 341 GPDGKTALHAAVYTYPTDILERVLIVRGTFKPQEIQELSKN------------------- 381
              G TALH A       I   +L    TF   E+  ++                     
Sbjct: 227 DRKGNTALHIATRKARPQITSLLL----TFTAIEVNAINNQKETAMDLADKLQYSESALE 282

Query: 382 ---------------VGRGQYPNGILRVQTE-KEPVDEEAL-------------KEMQSL 412
                          +GR      + R  ++ K  V  + L             KE++ L
Sbjct: 283 INEALVEAGAKHGRFIGREDEARALKRAVSDIKHEVQSQLLQNEKTNRRVSGIAKELRKL 342

Query: 413 H-----------TVVAALIATVTFAAGFTLPGGYWGKEGPIPGTPILIKNAGFRAFVVSD 461
           H           TVVA L A++ F A F LPG Y+  EG   G   +    GFR F + +
Sbjct: 343 HREAVQNTTNSITVVAVLFASIAFLAIFNLPGQYF-TEGSHVGQANIAGRTGFRVFCLLN 401

Query: 462 VIAMVLSVSAIFIYFLTPAKTLRQTKFLSDMPHNFIMVSLLAMVVAFITGTYAVLAP-SA 520
             ++ +S++ + +     A   R  K +  + +  +  +      AF+   +AV+   ++
Sbjct: 402 ATSLFISLAVVVVQITLVAWDTRAQKKVVSVVNKLMWAACACTFGAFLAIAFAVVGKGNS 461

Query: 521 GLSVATCVLG--------SSFILFAFANTF 542
            +++   +LG        +S   F F   F
Sbjct: 462 WMAITITLLGAPILVGTLASMCYFVFRQRF 491

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	556
255585399	575	ankyrin repeat-containing protein, putat	0.902	0.873	0.360	2e-76
224127106	575	predicted protein [Populus trichocarpa]	0.895	0.866	0.353	4e-69
255551947	582	ankyrin repeat-containing protein, putat	0.870	0.831	0.330	5e-63
298205141	645	unnamed protein product [Vitis vinifera]	0.868	0.748	0.332	5e-56
298205151	1006	unnamed protein product [Vitis vinifera]	0.908	0.501	0.326	8e-56
296085927	611	unnamed protein product [Vitis vinifera]	0.929	0.846	0.317	2e-55
359477893	617	PREDICTED: ankyrin repeat-containing pro	0.944	0.850	0.313	7e-55
359477901	622	PREDICTED: ankyrin repeat-containing pro	0.929	0.831	0.314	2e-54
147842376	546	hypothetical protein VITISV_043077 [Viti	0.902	0.919	0.327	4e-54
359478091	637	PREDICTED: ankyrin-1-like [Vitis vinifer	0.913	0.797	0.318	1e-53

>gi|255585399|ref|XP_002533395.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223526769|gb|EEF28995.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 210/582 (36%), Positives = 310/582 (53%), Gaps = 80/582 (13%)

Query: 1   MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSES 60
           M   LY+AA  G I+PF+  A   L+ +VT + K+T+LH+N+              S  S
Sbjct: 27  MSLDLYKAAEDGKIDPFKNFA-GPLDLLVTPI-KDTILHLNL-----------ASPSERS 73

Query: 61  TEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAA 120
           T FV++ LD+CP +L Q NA GD+ LH+AA+ GH  IV+ LI     Q  DLE   E A 
Sbjct: 74  TSFVKEALDMCPQILLQINADGDTLLHIAARYGHLDIVKLLIEHTRAQHQDLESAGE-AV 132

Query: 121 RQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEI 180
           RQ+L+MTN+ + T LHEA R    D+V++LI+ DP   +S+N   ET LY+A   G  E+
Sbjct: 133 RQMLRMTNKSKETALHEAARNDHPDLVELLIEQDPDFVHSSNDFGETPLYLASERGHLEV 192

Query: 181 VAEILQNCPQSA----------------------------ARQMLEKTNEEQNTPLHEAV 212
           V  +L+ C   A                               ++ K +E   TPLH A 
Sbjct: 193 VVIMLKACTSLAYGGPNGKTALHAAAMHRHGGIVHAILDKKTSLVNKADEMGWTPLHYAA 252

Query: 213 RLRRVDVVKILIKADPHVPYSANR-NSETPLYMAVANGSAEIVAEILQNCPESAARQMLE 271
            +    VVK L+  D +V Y+A++    T L++A    + + + EI+  CP+    ++++
Sbjct: 253 YIGASRVVKQLLGYDKYVAYAADKARRRTALHLAACQANIKSMREIIFKCPDCC--KLVD 310

Query: 272 KTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANR---NSETPLYMAAANGSVKIVA 328
             N   N   H AV  +S D  KIL+ A+P   Y  N       TPL++ AA        
Sbjct: 311 --NRGWNVA-HYAVISKSDDALKILL-ANPSCIYLVNEKDAQGNTPLHLLAA-------- 358

Query: 329 KILQKCP-SPAHEGPDGKTALHAAVYTYPTDILERVLIVRGTFKPQEIQELSKNVGRGQY 387
             LQ  P S  H     + A++   +     +  + L+ R   + +EIQE  +++G G  
Sbjct: 359 --LQSHPRSLMHHAKGHRFAVYRQNF-----LCIKELLSRSPCRKKEIQEWMRDLGGG-- 409

Query: 388 PNGILRVQTEKEPVDEEALKEMQSLHTVVAALIATVTFAAGFTLPGGYWGKEG-PIPGTP 446
           P G + ++ +   +  E  ++    H VVAAL+ATVTFAA FTLPGGY   +     G  
Sbjct: 410 PLGQIVIKKDDFILTFERARDS---HIVVAALVATVTFAAAFTLPGGYRSNDDEKDQGVA 466

Query: 447 ILIKNAGFRAFVVSDVIAMVLSVSAIFIYFLTPAKTLRQTKFLSDMPHNF--IMVSLLAM 504
           IL KN+ F+AF+++D IAMVLS S++FI+F       RQ +F+  M + F  I+ ++ AM
Sbjct: 467 ILGKNSAFKAFLITDAIAMVLSTSSLFIHFTLALHGYRQ-RFMWLMVYAFRCIVFAIEAM 525

Query: 505 VVAFITGTYAVLAPSAGLSVATCVLGSSFILFAFANTFMLAR 546
           VVAF+TGTYAVL+PS GL+++TC +G SF +F F   F+L R
Sbjct: 526 VVAFVTGTYAVLSPSQGLAISTCAIGLSFFIFVF---FILTR 564

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127106|ref|XP_002329398.1| predicted protein [Populus trichocarpa] gi|222870448|gb|EEF07579.1| predicted protein [Populus trichocarpa]

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 213/603 (35%), Positives = 303/603 (50%), Gaps = 105/603 (17%)

Query: 1   MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSES 60
           MD  L++AA  G+I PF       L  ++T   +NT+LHV     +L  Q+ E     ES
Sbjct: 1   MDPVLFKAAEAGNIGPFENYQTCSLNQLLTP-DENTILHV-----YLKNQSSE----PES 50

Query: 61  TEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAA 120
           T+FV++ L+ CP LLFQAN +G++PLHL A+ GH+ +V+ LI  A   P D E GV + A
Sbjct: 51  TDFVDKFLERCPPLLFQANKRGETPLHLEARYGHSNVVKVLIDRAKALPADPESGV-TKA 109

Query: 121 RQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANG---- 176
           + +L+MTNEEQ+T LHEA R R   VV+IL K DP  SY AN + ET LY+AV+ G    
Sbjct: 110 KMMLRMTNEEQDTALHEAARNRRSHVVEILTKEDPEFSYPANVHGETPLYIAVSIGFLMF 169

Query: 177 ---SAEIVAEILQNC-------PQS--------------AARQMLEK-------TNEEQN 205
                ++V  IL NC       P                 AR+MLEK       T+E   
Sbjct: 170 SEEHGKVVDGILGNCISVDYGGPDGRTALHAASMAANYETARKMLEKEKKLTKTTDENGW 229

Query: 206 TPLHEA--VRLRRVDVVKILIKADPHVPYSA-NRNSETPLYMAVANGSAEIVAEILQNCP 262
           +PLH A         +V++L++ D      A      T L++A   G  + + EI+  CP
Sbjct: 230 SPLHYASYCDWSNAPIVEVLLEYDASTASIAETEKKRTALHIAAIQGHVDAMKEIVSRCP 289

Query: 263 ESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSE------TPLY 316
             A   +++  N   N  LH AV  +   V K  ++    +P  A   +E      TP +
Sbjct: 290 --ACCDLVD--NRGWNA-LHYAVASKDTKVFKECLK----IPELARLQTEKDDKGNTPFH 340

Query: 317 MAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPT----DILERVLIVRGTFKP 372
           + AA                 AHE P+ +  L      Y       + +R L V   ++ 
Sbjct: 341 LIAA----------------LAHEQPEWRYVLFNDSNGYRKWQIYGLNKRKLSVNDIYEE 384

Query: 373 ------QEIQELSKNVGRGQYPNGILRVQTEKEPVDEEALKEMQSLHTVVAALIATVTFA 426
                 +EI E   + G G        ++  +    E+AL + +  H VVAALIATVTFA
Sbjct: 385 DFGEIQKEILESLNDGGSGPLGRRRKVLRRGRNKEGEDALSKARESHLVVAALIATVTFA 444

Query: 427 AGFTLPGGYWGKEGPIPGTPILIKNAGFRAFVVSDVIAMVLSVSAIFIYFLTP---AKTL 483
           A FTLPGGY        GT IL K A F  FVVSD ++MVLS+SA+FI+FL     A  +
Sbjct: 445 AAFTLPGGYKSDR----GTAILAKKAAFIVFVVSDAMSMVLSISAVFIHFLISLIHAFEM 500

Query: 484 RQTKFLSD--------MPHNFIMVSLLAMVVAFITGTYAVLAPSAGLSVATCVLGSSFIL 535
            ++K +S+        +   F M+ +  M++AFITGTYAVL PS GL++++C++G SF  
Sbjct: 501 EKSKDISEEAAIKLFGVATLFTMIGMGIMIIAFITGTYAVLEPSLGLAISSCLIGLSFFF 560

Query: 536 FAF 538
             +
Sbjct: 561 IVY 563

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551947|ref|XP_002517018.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223543653|gb|EEF45181.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  248 bits (634), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 189/571 (33%), Positives = 280/571 (49%), Gaps = 87/571 (15%)

Query: 1   MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSES 60
           MD +LY+AA + +I   ++ A+D L+  VT   KNT+LH+++              +  S
Sbjct: 51  MDAELYKAAVEENINSLKKYAKD-LDLQVTP-KKNTILHIHL-----------NSPNKRS 97

Query: 61  TEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAA 120
            +FV++ L LCPSLL++ N+ GD+PLH+AA+ GH  IV+ L+  A  Q  DLE G   A 
Sbjct: 98  VDFVKEALQLCPSLLWKNNSNGDAPLHIAARYGHIDIVKLLLEQAKAQNEDLETG-RGAM 156

Query: 121 RQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEI 180
           +Q+ +M NE+++  LHEA R   + VV++L + DPH  Y AN   ET LY+A A G   +
Sbjct: 157 KQMWQMQNEKKDMALHEAARNNHLSVVRLLTRLDPHFLYPANDYEETPLYLAAARGYLYV 216

Query: 181 VAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSET 240
           V EIL  C   A          +  T LH AV      +V  ++K +  +   A  N  T
Sbjct: 217 VIEILNTCKSVAY------GGPKGKTALHGAVLSGNRGIVLEILKREKRLTIEAEENGWT 270

Query: 241 PLYMAV----ANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKIL 296
           PL+ A      N  A ++ + L  C +SAA                             +
Sbjct: 271 PLHYAAYGNDQNFGAYVIVQRLLECDKSAA----------------------------YV 302

Query: 297 IEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPD-GKTALHAAVYTY 355
           ++ D            T L++AA  G+V+I+ +I+ KCP       D G   LH AV + 
Sbjct: 303 VDKD---------RKRTALHLAACRGNVRIMKEIISKCPDCCEIADDRGWNVLHYAVVSK 353

Query: 356 PTDILERVLIVRGTFKPQEIQELSKNVGRGQYPNGILRVQTEKEP-------------VD 402
             + L+  +I+R +     I  ++    +G  P  +L V     P               
Sbjct: 354 NDEALQ--VILRNS---SLIDLVNDRDAQGNTPLHLLAVSRPYLPSFVFDGEDDLNAFYK 408

Query: 403 EEALKEMQSLHTVVAALIATVTFAAGFTLPGGYWGKEG-PIPGTPILIKNAGFRAFVVSD 461
           +  L     +H ++            FTLPGGY   E  P  GT IL K++ F AF+++D
Sbjct: 409 QNVLSRDDLIHELLQPKYQQKR-QXXFTLPGGYRSDENDPRQGTAILSKSSAFEAFIITD 467

Query: 462 VIAMVLSVSAIFIYFLTPAKTLRQT-KFLSDMPHNFIMVSLLAMVVAFITGTYAVLAPSA 520
            IAMVLS  ++FI+F+      ++   +L      FIM ++ AMVVAF TGTYAVL+PS 
Sbjct: 468 TIAMVLSTCSVFIHFIVMLLGYQEKYWWLIRSALLFIMFAMGAMVVAFATGTYAVLSPSL 527

Query: 521 GLSVATCVLGSSFILFAFANTFMLARGLYQR 551
           GL+VATC +G SF ++ F   +ML R LY R
Sbjct: 528 GLAVATCFIGLSFFIYVF---YMLKR-LYSR 554

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298205141|emb|CBI17200.3| unnamed protein product [Vitis vinifera]

 Score =  225 bits (573), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 194/584 (33%), Positives = 278/584 (47%), Gaps = 101/584 (17%)

Query: 5   LYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFV 64
           +YEAAA GDI+   EI   E E +      NT+LH+          +E G+     T+ V
Sbjct: 119 VYEAAAMGDIKILEEIPESEFE-VQLSPKHNTILHI---------ASEFGQ-----TDCV 163

Query: 65  EQILDL--CPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQ 122
           + IL+L  C SLL + N  GD+PLHLAA++GH  +VE LI  A + P+D+E    S+ + 
Sbjct: 164 KWILELPSCSSLLQRPNMNGDTPLHLAAREGHLEVVEALINTAKQLPLDIETKT-SSEKV 222

Query: 123 ILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVA 182
           +L+MTN+ ++T LHEAVR    DVVK+LI+ DP  SY AN +  T LYMA   G  ++V 
Sbjct: 223 MLRMTNKGKDTALHEAVRYWHSDVVKLLIEEDPDFSYGANDSGTTPLYMAAERGYRDVVK 282

Query: 183 EILQNCPQSAARQMLEKT-------------------NEEQNTPLHEAVRLRRVD--VVK 221
            I+ N    +   ++ +T                    E   +PLH     R  D  +V 
Sbjct: 283 IIIDNSTSPSYNGLMGRTALHAAVICNNQGRKCIYLFYENGWSPLHCGAE-RGCDPTIVG 341

Query: 222 ILIKADPHVPY-SANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTP 280
            L+  D  V Y +    ++T L++A  +   +IV EI+ + P    R   E+ +++ N  
Sbjct: 342 ELLNIDKSVAYLTIKDGNKTALHIASFHHHTKIVEEIVSHSP--GCR---EQVDDKGNNA 396

Query: 281 LHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHE 340
            H A+ ++  D        D +  +S  RN                  K L+       +
Sbjct: 397 FHFAM-MKKGD--------DDYYIHSYFRN------------------KWLRTRGLVNEK 429

Query: 341 GPDGKTALHAAVYTYPTDILERVLIVRGTFKPQEIQELSKNVGRGQYPNGI------LRV 394
              G T LH         +L    I R + K + IQE  +    G     +      L+ 
Sbjct: 430 DAQGNTPLH---------LLSCYQIQRFSEKGK-IQEQFEWAMPGNTSMAMEKSMKKLKK 479

Query: 395 QTEKEPVDEEALKEMQS---LHTVVAALIATVTFAAGFTLPGGYWGKEGPIPGTPILIKN 451
           +TE +   E+   E++     H +V+ALI TVTFAAGFTLPGGY  KE    G  IL K 
Sbjct: 480 ETESKEYKEKYTSELRKQGETHLIVSALITTVTFAAGFTLPGGY--KED--DGKAILSKK 535

Query: 452 AGFRAFVVSDVIAMVLSVSAIFIYFLTPAKTLRQTKFLSD---MPHNFIMVSLLAMVVAF 508
           A F AFVV+D IAMV S+ A+F++F    +  +  +FL         F MV + AM +AF
Sbjct: 536 AAFGAFVVTDTIAMVSSLCAVFLHFFMTMR--KDDEFLEKHLLWAFIFTMVGMGAMAIAF 593

Query: 509 ITGTYAVLAPSAGLSVATCVLGSSFILFAFANTFMLARGLYQRM 552
            TG Y VL  S+GLS  +C+L S F L          RG    M
Sbjct: 594 ATGLYVVLPHSSGLSFLSCILCSCFFLSFVVEYCQFWRGTISDM 637

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298205151|emb|CBI17210.3| unnamed protein product [Vitis vinifera]

 Score =  224 bits (572), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 181/554 (32%), Positives = 271/554 (48%), Gaps = 49/554 (8%)

Query: 1   MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSES 60
           MD  +Y+AAAKGDIE  ++I   +  + +T    NT+LH+          +E G+     
Sbjct: 470 MDDSVYKAAAKGDIEVLKKIPESQFHAQLTP-KHNTILHI---------ASEFGQ----- 514

Query: 61  TEFVEQILDL--CPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQP-IDLERGVE 117
           TE V+ IL L  C SLL   N  GD+ LHLAA++GH  +VE L+     +P +D+E GV 
Sbjct: 515 TECVKWILTLPACSSLLQCPNLNGDTVLHLAAREGHLKVVEALL-----EPTLDIETGVG 569

Query: 118 SAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGS 177
                ++ MTN+ +NT LHEAVR    DVV+ LI+ DP  +Y AN +  T LYMA   G 
Sbjct: 570 EDKEMLIGMTNKGKNTALHEAVRFNHSDVVESLIEKDPRFNYRANDSGTTPLYMAAERGL 629

Query: 178 AEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRN 237
             +V  I+     S +   L        T LH AV      +   +++  P +    ++N
Sbjct: 630 TGLVVLIIDKSSTSPSYHGLMG-----RTALHAAVLCNNEAMTNKILEWKPDLTKEVDKN 684

Query: 238 SETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILI 297
             +PL+ A   G    + E+L +  E +   +  ++ + + T LH A       + + ++
Sbjct: 685 GWSPLHYAAERGCDLKIVELLLSKSEKSVAYL--RSKDGKKTALHIASFHHHTKIVEEIL 742

Query: 298 EADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPT 357
              P      N    TP+++ + N          +K    A+   D    L         
Sbjct: 743 SHSPGCREQKNAQGNTPIHLLSLNQISDSWFVWNEKVDKKAYNNED----LTGYDIILRA 798

Query: 358 DILERVLIVRGTFKPQEIQELSKNVGRGQYPNGILRVQTEKEPVDEEALKEMQSLHTVVA 417
           DI E+   ++  F  + +   S++    +      R +  KE + +  L++    H +V+
Sbjct: 799 DISEKKENIQVAF--EYVMTESRSSVTEKETKRRERKKERKEYISQ--LQKQGETHLIVS 854

Query: 418 ALIATVTFAAGFTLPGGYWGKEGPIPGTPILIKNAGFRAFVVSDVIAMVLSVSAIFIYFL 477
           ALI TVTFAAGFTLPGGY  KE    G  IL K A FRAFVV+D IAMV S+ A+ ++F 
Sbjct: 855 ALITTVTFAAGFTLPGGY--KED--DGQAILSKKAAFRAFVVTDTIAMVSSLCAVLLHFF 910

Query: 478 TPAKTLRQT-KFLSD---MPHNFIMVSLLAMVVAFITGTYAVLAPSAGLSVATCVLGSSF 533
               T+RQ  ++L        +  MV + AM +AF TG+YAVL  S+GLS  TC++ S F
Sbjct: 911 M---TMRQRGEYLEKHLLWAFSLTMVGMGAMAIAFATGSYAVLPHSSGLSFLTCIICSCF 967

Query: 534 ILFAFANTFMLARG 547
            L       +  RG
Sbjct: 968 FLSIAVEYCLFWRG 981

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085927|emb|CBI31368.3| unnamed protein product [Vitis vinifera]

 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 188/592 (31%), Positives = 273/592 (46%), Gaps = 75/592 (12%)

Query: 1   MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSES 60
           MD  LYEAAA G I+   +++       +T   KNTVLH+      L           + 
Sbjct: 47  MDAALYEAAAYGRIDVLEQMSEHHFVVQLTP-NKNTVLHIAAQFGQL-----------DC 94

Query: 61  TEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAA 120
            +++  +     SLL + N KGD+PLH AA++GH  +V+ LI  A R   ++E GV    
Sbjct: 95  VQYILGLHSS-SSLLLKPNLKGDTPLHHAAREGHLTVVKALIDAAKRLHQEIESGV-GGD 152

Query: 121 RQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEI 180
           + I++MTNEE+NT LHEAVR    +VVK L + DP   Y AN    TLLYMA   G  ++
Sbjct: 153 KAIMRMTNEEENTALHEAVRYHHSEVVKSLTEEDPEFIYGANIAGYTLLYMAAERGFEDL 212

Query: 181 VAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSET 240
           V  IL  C   +   M+ +      T LH AV     ++   L++  P +    + N  +
Sbjct: 213 VNLILGTCTSPSYSGMMGR------TALHAAVIRNDQEMTARLLEWKPDLTKEVDENGWS 266

Query: 241 PLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEAD 300
           PL+ A   G   IV ++L   P+ +   +  K  + + T LH A      D+ K+L+   
Sbjct: 267 PLHCAAYLGHTAIVEQLLDKSPDKSVTYLGLK--DSKKTALHIAANRDHRDIVKLLLSHS 324

Query: 301 PHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPA------HEGPDGKTALH--AAV 352
           P      +      L+ A  +        IL +    +       +   G T LH  A+ 
Sbjct: 325 PDCCEQVDDKGNNVLHYAIMSEQFLAAGGILGRNSLLSVRRLINEKDAKGDTPLHLLASY 384

Query: 353 YTYP---------------TDILERV-LIVRGTFKPQEI--QELSKN--------VGRGQ 386
             Y                 D L  + +I R   KP+ I  +E+ +         VG   
Sbjct: 385 QVYDPFLSADNRVDKMALNKDKLTALDIISRDKVKPRRIFKEEIRRQWREWEKVVVGPFS 444

Query: 387 YPNGILRVQTEKEPVDEE------ALKEMQSLHTVVAALIATVTFAAGFTLPGGYWGKEG 440
           +   I +     +  D E        K     H +VAAL+ATVTFAAGFTLPGGY     
Sbjct: 445 WQEAINKDSGSSKSEDVEKDESISTTKREGETHLIVAALVATVTFAAGFTLPGGYNDN-- 502

Query: 441 PIPGTPILIKNAGFRAFVVSDVIAMVLSVSAIFIYFLTPAKTLRQTKFLSD---MPHNFI 497
              G  IL K A F+AF+V+D +A++LSVSA+F+YF           +L     M     
Sbjct: 503 ---GMAILTKRAAFKAFIVTDTMAVILSVSAVFVYFFMSVH--EDEDYLDKHLIMGFFLT 557

Query: 498 MVSLLAMVVAFITGTYAVLAPSAGLSVATCVLGSSFIL---FAFANTFMLAR 546
           ++S+ AMVVAF+TG YAVL  S+GL + TC++   F+L   F F   F   +
Sbjct: 558 VLSMGAMVVAFMTGLYAVLPLSSGLPIVTCIICCIFLLAFYFVFRQLFKFIK 609

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477893|ref|XP_002271294.2| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  221 bits (563), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 186/594 (31%), Positives = 282/594 (47%), Gaps = 69/594 (11%)

Query: 1   MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSES 60
           MD  +YEAAAKGDI+  ++I   E  + ++    NT+LH+          +E G+I  E 
Sbjct: 53  MDDSVYEAAAKGDIDVLKKIPESEFHAQLSP-KHNTILHI---------ASEFGKI--EC 100

Query: 61  TEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAA 120
             ++  +      L  + N   D+PLHLAA++GH  +VE LI  A    +D+E G     
Sbjct: 101 VNWILDLPSSSSLLQ-RPNLNEDTPLHLAARQGHLEVVEALINAAREPTLDIETG-PGPH 158

Query: 121 RQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEI 180
           + +L+M N+ ++T LHEAVR R+  VV +LI+ DP  +Y AN +  T LYMAV  G    
Sbjct: 159 KVMLRMKNKGKDTALHEAVRYRNYGVVMLLIEEDPDFTYGANDSGITPLYMAVEGGFTAA 218

Query: 181 VAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSET 240
           V  I++    S +   L        T LH AV    +++ K +++  P +    ++N  +
Sbjct: 219 VKLIIEKSSTSPSYNGLMG-----RTALHAAVICNDIEMTKTILEWKPDLTKEVDKNGWS 273

Query: 241 PLYMAVANGSA-EIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEA 299
           PL+ A   G   EIV  +L+   +S A     ++ + + T LH A       + + ++  
Sbjct: 274 PLHYAAERGCDPEIVRLLLEKSEKSVAYL---RSKDGKKTALHIASFHHHTKIVEKILSH 330

Query: 300 DPHVPYSANRNSETPLYMAAA-------NGSVKIVAKILQKCPSPAHEGPDGKTALHAA- 351
            P      +       + A         N S       L+       +   G T +H   
Sbjct: 331 SPGCREQVDDKGNNIFHFAMMKEGDDDFNPSSYFFNYWLRSRGLVNEKNAQGNTPIHLLS 390

Query: 352 ---------VYTYPT--------DILERVLIVRG----TFKPQEIQELSKNVGRGQYPNG 390
                    V+ Y          D+    +I+R     + +   IQ   + V  G+  + 
Sbjct: 391 LNQILDFRFVWNYKVDKKAYNNEDLTAYDIILRDKEDISEEKDRIQSWLEAVTTGRI-SS 449

Query: 391 ILRVQTEKEPVDEE------ALKEMQSLHTVVAALIATVTFAAGFTLPGGYWGKEGPIPG 444
               +T+++ +++E       L++    H +V+ALI TVTFAAGFTLPGGY  KE    G
Sbjct: 450 FWEKETKRQEIEQERKEYISQLQKQGETHLIVSALITTVTFAAGFTLPGGY--KED--DG 505

Query: 445 TPILIKNAGFRAFVVSDVIAMVLSVSAIFIYFLTPAKTLRQTKFLSD---MPHNFIMVSL 501
             IL K A FRAFVV+D IAMV S+ A+F++FL      ++ KFL        +  MV +
Sbjct: 506 QAILSKKAAFRAFVVTDTIAMVSSLCAVFLHFLMTLH--KRGKFLEKHLLWAFSLTMVGM 563

Query: 502 LAMVVAFITGTYAVLAPSAGLSVATCVLGSSFILFAFANTFMLARG-LYQRMFG 554
            AM +AF TG YAVL  S+GLSV TC+L S F L          RG + + MFG
Sbjct: 564 GAMAIAFATGLYAVLPHSSGLSVLTCILCSCFFLSIAVEYCKFWRGTISEWMFG 617

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477901|ref|XP_003632040.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 193/613 (31%), Positives = 301/613 (49%), Gaps = 96/613 (15%)

Query: 1   MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSES 60
           MD  +Y AAAKG++   ++++ D+L+ I      N+VLH+                  + 
Sbjct: 33  MDSSVYRAAAKGNVHVLKQLSEDDLQ-IQLSPKHNSVLHI--------------AAQFDQ 77

Query: 61  TEFVEQILDLCPSLLF--QANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVES 118
            E V  IL L  S     + N KGD+PLHLAA++GH  +V+ L+  A   P+D+E GV  
Sbjct: 78  PECVNWILTLPSSSSLLQRPNLKGDTPLHLAAREGHLEVVKALLEAAKALPMDIESGV-G 136

Query: 119 AARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSA 178
           A + +++M N+ ++T LHEAVR R  DVVK+LIK DP   Y  N +  T LYMA   G +
Sbjct: 137 ADKALVRMRNKGKDTALHEAVRYRHSDVVKLLIKVDPEFMYGENISGGTPLYMAAERGFS 196

Query: 179 EIVAEILQNCPQSAA----------------------RQMLE-------KTNEEQNTPLH 209
           ++V  I++N   S A                      +++LE       + +E   +PLH
Sbjct: 197 DLVEIIIENTSTSPAYHGLMGRTALHAAVIRKDKVMTKKILEWKPALTKEVDEIGWSPLH 256

Query: 210 EAVRLRRVDVV--KILIKADPHVPYSANRN-SETPLYMAVANGSAEIVAEILQNCPESAA 266
            A  L     +  ++L K+D  VPY   ++ ++T L++A   G  +IV  +  + P+   
Sbjct: 257 CAAYLGCSPTIVRELLQKSDKSVPYLGIKDGNKTALHIAANRGHMKIVELLASHSPDCC- 315

Query: 267 RQMLEKTNEEQNTPLHEA-VRLRSVDVAKILIEADPHVPYSAN-RNSE--TPLYMAAANG 322
               E+ +++ N   H A ++ R +    +L  +   V    N +N E  TP ++     
Sbjct: 316 ----EQVDDKGNNVFHFAMLKRRWLATGNLLYNSWLGVRGVVNEKNGEGDTPFHL----- 366

Query: 323 SVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERV--------LIVRGTFKPQE 374
              I +  +       + G D K A +   +T   DIL R          ++R  ++ +E
Sbjct: 367 ---ISSYQIDDPTFICNLGVD-KMAFNNQNFT-GMDILSRANDICGRRDFVLRRFYRFKE 421

Query: 375 I------------QELSKNVGRGQYPNGILRVQTEKEPVD-EEALKEMQSLHTVVAALIA 421
                        ++   + G+G+   G   +  +    D  + ++     H +VAALIA
Sbjct: 422 AYVGPLWWREEIKEDDGSSEGKGKGNEGDKGINIKNGSSDFSKVIQRRGENHLIVAALIA 481

Query: 422 TVTFAAGFTLPGGYWGKEGPIPGTPILIKNAGFRAFVVSDVIAMVLSVSAIFIYFLTPAK 481
           TVTFAAGFTLPGGY   E    GT  L K   F+AFVV D +AMVLSVSAIFI+F     
Sbjct: 482 TVTFAAGFTLPGGYNVNE----GTATLAKKTAFKAFVVMDTLAMVLSVSAIFIFFFMSWH 537

Query: 482 TLRQTKFLSDMPHNFI-MVSLLAMVVAFITGTYAVLAPSAGLSVATCVLGSSFILFAFAN 540
             + +     +P  F+ M+++ AMV+AF+TG YAVL  S+ L + TC++  SF L  +  
Sbjct: 538 VKKASLNKHIIPGFFLTMLAMGAMVMAFMTGLYAVLPESSWLPLFTCIICCSFFLSLYFE 597

Query: 541 TFMLARGLYQRMF 553
             +L +G Y+ MF
Sbjct: 598 LNVLLKG-YKVMF 609

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147842376|emb|CAN69518.1| hypothetical protein VITISV_043077 [Vitis vinifera]

 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 193/589 (32%), Positives = 279/589 (47%), Gaps = 87/589 (14%)

Query: 1   MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSES 60
           MD  +YE AA+G IE  ++I   E   +      NT+LH+          +E G+I S  
Sbjct: 1   MDDSVYEVAAEGMIEVLKKIPESEFR-VQLSPRHNTILHI---------ASEFGQIDS-- 48

Query: 61  TEFVEQILDL--CPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVES 118
              V+ IL L  C SLL   N  GD+PLHLAA++GH  +VE L+        D+E GV +
Sbjct: 49  ---VQWILMLPSCSSLLQCLNLNGDTPLHLAAREGHLEVVEALVCKERELHADIETGVGA 105

Query: 119 AARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSA 178
               +++MTN+ +NT LHEAVR    +VV +LIK DP  +Y AN +  T LYMAV  G  
Sbjct: 106 DKEMLIRMTNKGKNTALHEAVRYGHYEVVMLLIKEDPDFTYGANDSGITPLYMAVEGGFT 165

Query: 179 EIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAV---RLRRVD--VVKILI-KADPHVPY 232
             V  I++    S +   L        T LH AV    + R D  +VK+L+ K++  V Y
Sbjct: 166 AAVKLIIEKSSTSPSYNGL-----MGRTALHAAVICNDIERGDLEIVKLLLEKSEKSVAY 220

Query: 233 SANRNS-ETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVD 291
             +++  +T L++A  +   EIV +IL + P    R   E+ +++ N   H A+     D
Sbjct: 221 LRSKDGKKTALHIASFHHRTEIVEKILSHSP--GCR---EQVDDKGNNIFHFAMMKEGDD 275

Query: 292 VAKILIEADPHVPY------------SANRNSETPLYMAAANGSVKIVAKILQKCPSPAH 339
                 + +P   +              N    TP+++ +    +      +      A+
Sbjct: 276 ------DFNPSSYFFNYWLRLRGLINKKNAQGNTPIHLLSLKQILDFEFVRMHMVDKKAY 329

Query: 340 EGPDGKTALHAAVY-----TYPTDILERVLIVRGT-----FKPQEIQELSKNVGRGQYPN 389
              D  TA    +      +   D ++R+  +  T     F  +EI+   +   R +Y  
Sbjct: 330 NNED-LTAYDIILRAKEDNSEKKDEIQRLFELAMTEDICSFWEKEIKGRERKKERKEY-- 386

Query: 390 GILRVQTEKEPVDEEALKEMQSLHTVVAALIATVTFAAGFTLPGGYWGKEGPIPGTPILI 449
            I ++Q + E             H +V+A I TVTFAAGFTL GGY  KE    G  IL 
Sbjct: 387 -ISQLQKQGET------------HLIVSAFITTVTFAAGFTLLGGY--KED--DGKAILS 429

Query: 450 KNAGFRAFVVSDVIAMVLSVSAIFIYFLTPAKTLRQTKFLSD---MPHNFIMVSLLAMVV 506
           K A FRAFVV+D IAMV S+ A+F++F       ++ KFL         F  V++ AM +
Sbjct: 430 KKAAFRAFVVTDTIAMVSSLCAVFLHFFMTLH--KRGKFLEKHLLWAFIFTRVAMGAMAI 487

Query: 507 AFITGTYAVLAPSAGLSVATCVLGSSFILFAFANTFMLARGLYQRMFGN 555
           AF TG YAVL  S+GLSV TC+L S F L          RG    M G 
Sbjct: 488 AFATGLYAVLPHSSGLSVLTCILCSCFFLSIAVEYCKFWRGTISGMLGK 536

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478091|ref|XP_002270351.2| PREDICTED: ankyrin-1-like [Vitis vinifera]

 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 194/610 (31%), Positives = 274/610 (44%), Gaps = 102/610 (16%)

Query: 1   MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSES 60
           MD  LYEAAA G I+   +++ D     +T   KNTVLH+      L             
Sbjct: 47  MDAALYEAAAYGRIDVLEQMSEDHFVVQLTP-NKNTVLHIAAQFGQL------------- 92

Query: 61  TEFVEQILDLCPS--LLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVES 118
            + V+ IL L  S  LL + N KGD+PLH AA++GH  +V+ LI  A R   ++E GV  
Sbjct: 93  -DCVQYILGLNSSSFLLLRPNLKGDTPLHHAAREGHLTVVKALIDAAKRLHQEIESGV-G 150

Query: 119 AARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSA 178
             + I++MTNEE+NT LHEAVR    +VVK L + DP   Y AN    TLLYMA   G  
Sbjct: 151 GDKAIMRMTNEEENTALHEAVRYHHSEVVKSLTEEDPEFIYGANITGYTLLYMAAERGFE 210

Query: 179 EIVAEILQNCPQSAARQMLEKT--------NEEQNTPLHEAVRLRR-VDVVKILIKADPH 229
           ++V  I+  C   A   M+ +T        N++  T    ++  R   ++   L++  P 
Sbjct: 211 DLVNLIIGTCTSPAHSGMMGRTALHAAVIRNDQGITYADPSLESRFPCEMTARLLEWKPD 270

Query: 230 VPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRS 289
           +    + N  +PL+ A   G   IV ++L   P+ +   +  K  + + T LH A     
Sbjct: 271 LTKEVDENGWSPLHCAAYLGYTAIVEQLLDKSPDKSVTYLGIK--DSKKTALHIAANRHH 328

Query: 290 VDVAKILIEADPHVPYSANRNSETPLYMA------AANGSVKIVAKILQKCPSPAHEGPD 343
            D+ K L+   P      +      L+ A       A G++     +L        +   
Sbjct: 329 QDIVKRLLSHSPDCCEQVDDKGNNVLHSAIMSERYYAPGNIFRDNSLLWVTGLINEKDAK 388

Query: 344 GKTALH--AAVYTYP---------------------TDILERVLIVRGT----------- 369
           G T LH  A+   Y                       DIL R  +  G            
Sbjct: 389 GDTPLHLLASYQVYDPFLSENNRVDKMALNKDKLTALDILSRANVKSGNISREVLLKQLK 448

Query: 370 ---------FKPQE-IQELSKNVGRGQY-PNGILRVQTEKEPVDEEA----LKEMQSLHT 414
                    F  QE I + S + G G    NG     ++ + V E+     +  +   H 
Sbjct: 449 EGEKVDVGPFSWQEAINKDSGSTGNGSADDNG---SSSKSKDVGEDKIISNINRIGETHL 505

Query: 415 VVAALIATVTFAAGFTLPGGYWGKEGPIPGTPILIKNAGFRAFVVSDVIAMVLSVSAIFI 474
           +VAAL+ATVTFAAGFTLPGGY        G   L K A F AF+V+D IA+ LSVSA+F+
Sbjct: 506 IVAALVATVTFAAGFTLPGGY-----DSDGMATLTKKAAFIAFIVTDTIAVTLSVSAVFV 560

Query: 475 YFLTPAKTLRQTKFLSDMPHNF-----IMVSLLAMVVAFITGTYAVLAPSAGLSVATCVL 529
           YF           FL    H F      +  + AM+VAF+TG YAVL  S+GL +  C++
Sbjct: 561 YFFMSLH--EDEGFLE--KHLFTGFYLTVFGIGAMMVAFMTGLYAVLPLSSGLPIVACII 616

Query: 530 GSSFIL-FAF 538
            S F+L F F
Sbjct: 617 CSFFLLPFYF 626

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	556
TAIR|locus:2129690	670	ACD6 "AT4G14400" [Arabidopsis	0.514	0.426	0.257	1.7e-29
TAIR|locus:2138391	572	AT4G05040 "AT4G05040" [Arabido	0.505	0.491	0.267	2e-28
TAIR|locus:2170081	535	AT5G50140 "AT5G50140" [Arabido	0.278	0.289	0.310	6.8e-24
TAIR|locus:2045233	662	AT2G31820 [Arabidopsis thalian	0.773	0.649	0.246	1.3e-23
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.816	0.737	0.249	1.1e-21
TAIR|locus:2009046	573	AT1G34050 "AT1G34050" [Arabido	0.787	0.764	0.234	1.6e-17
TAIR|locus:2128791	683	AT4G03470 [Arabidopsis thalian	0.827	0.673	0.256	2.4e-20
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.784	0.718	0.246	8.3e-20
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.715	0.587	0.275	2.3e-19
UNIPROTKB|F1SE30	1885	ANK1 "Uncharacterized protein"	0.526	0.155	0.294	5.1e-19

TAIR|locus:2129690 ACD6 "AT4G14400" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 1.7e-29, Sum P(2) = 1.7e-29
 Identities = 79/307 (25%), Positives = 138/307 (44%)

Query:    64 VEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLE-RGVESAARQ 122
             V++I+  CP LLF+ N+   +PLH+A   GHT +VE L+         L     E     
Sbjct:   117 VKEIIFECPCLLFEQNSSRQTPLHVATHGGHTKVVEALVASVTSALASLSTEESEGLNPH 176

Query:   123 ILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSA--EI 180
             +LK  +E+ NT L+ A+  R +++   L+ AD    +  N    + LY AV  G+   ++
Sbjct:   177 VLK--DEDGNTALYYAIEGRYLEMATCLVNADKDAPFLGNNKGISSLYEAVDAGNKFEDL 234

Query:   181 VAEILQNCPQSAARQMLEKTNEEQ----NTPL-HEAVRLRRVDVVKILIKADPHVPYSAN 235
             V  IL+    +  R++  K N +     N  L H A++ + + V+ +++   P +    +
Sbjct:   235 VKAILKTTDDNVDREV-RKFNLDSKLQGNKHLAHVALKAKSIGVLDVILDEYPSLMDEQD 293

Query:   236 RNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKI 295
              +  T L    + G  + +  IL    +      +   +++ + P+H A +    ++ K 
Sbjct:   294 EDGRTCLSYGASIGYYKGLCNILNRSTKG-----VYVCDQDGSFPIHSAAKNEHYEIIKE 348

Query:   296 LIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGP----DGKTALHAA 351
              I+  P   Y  NR  +  L++AA N    + A +L       H G     DG T LH A
Sbjct:   349 FIKRCPASKYLLNRLGQNILHVAAKN-EASLTAYMLMHDKDTKHLGVGQDVDGNTPLHLA 407

Query:   352 VYTYPTD 358
             V  +  D
Sbjct:   408 VMNWDFD 414

GO:0008219 "cell death" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0016020 "membrane" evidence=ISS;IDA

GO:0009615 "response to virus" evidence=IEP

TAIR|locus:2138391 AT4G05040 "AT4G05040" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
 Identities = 81/303 (26%), Positives = 139/303 (45%)

Query:    64 VEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIV----FANRQPIDLERGVESA 119
             V+ I+  CP L+ + N K   PLH+AA  GH+AIVE L+     F++R     E   E  
Sbjct:   131 VKNIISECPCLVLELNFKDQLPLHVAAHAGHSAIVEALVASVTFFSDRLA---EEDRERL 187

Query:   120 ARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAE 179
                +L+  ++  NT LH A+  R +++   L+  + + S+  N    + LYMAV  G   
Sbjct:   188 NPYVLR--DKYGNTALHLAIEGRYMEMAASLVNENQNASFLENNEGISSLYMAVEAGDVT 245

Query:   180 IVAEILQ---NCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANR 236
             +V EIL+   N         L+   E +   +H A+  R + V+ +++   P +    + 
Sbjct:   246 LVKEILKTAGNNDLEGRNSNLDSKLEGRKHLVHVALNARSIGVLDVILNEYPSLEDERDE 305

Query:   237 NSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKIL 296
                T L  A + G  + V  +L    ++     +   +E+ + P+H A     + + K +
Sbjct:   306 EGRTCLSFAASIGFYKGVCNLLDRSTKN-----VYVCDEDGSFPIHTAAENGHIRIVKEI 360

Query:   297 IEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGP----DGKTALHAAV 352
             ++  PH  +  N+  +  L++AA  G   +V K L +     H G     DG T LH AV
Sbjct:   361 LKRCPHSKHMLNKLGQNVLHIAAKIGEHNLV-KSLMRSDDTKHLGVGQDVDGNTPLHLAV 419

Query:   353 YTY 355
               +
Sbjct:   420 LNW 422

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2170081 AT5G50140 "AT5G50140" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 6.8e-24, Sum P(2) = 6.8e-24
 Identities = 51/164 (31%), Positives = 94/164 (57%)

Query:    64 VEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPID-LERGVESAARQ 122
             V++I+++ PSL+   N K D+PLHLAA+ GHT+I+  L++ +  + I+ LE  V +  + 
Sbjct:    43 VKKIVEIHPSLVSSTNTKSDTPLHLAARLGHTSIL-LLMLESTAESIESLEETVPNDLK- 100

Query:   123 ILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSAN--RNSETLLYMAVANGSAEI 180
             + +M N++  TPLH AV   SV+ +   I   P +S+ +   + SET+ ++A  +   E 
Sbjct:   101 LAEMVNKDGFTPLHCAVMNGSVETLTAFINKAP-LSFDSVTLQTSETVFHLAARHKKMEA 159

Query:   181 VAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILI 224
                + +N   +  R++L + + E NT LH A  +  + +V  ++
Sbjct:   160 FIFMAKN---ANLRRLLYELDGEGNTVLHAAASVGFLSLVSYIV 200

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2045233 AT2G31820 [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.3e-23, P = 1.3e-23
 Identities = 119/482 (24%), Positives = 228/482 (47%)

Query:    81 KGDSPLHLAAKKGHTAIVEFLI--------VFANRQPIDLERGVESAAR--------QIL 124
             +GDS LH+AA+ G+ + V+ LI           ++Q ++ E  + +AA         ++L
Sbjct:   150 RGDSSLHIAARTGNLSKVKELIRGCGDELKELLSKQNLEGETPLYTAAENGHSIVVEEML 209

Query:   125 KMTNEE------QN--TPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANG 176
             K  + E      +N   P H A +   ++V+KIL++  P+++ + + +  T L+ A   G
Sbjct:   210 KHMDLETASIAARNGFDPFHVAAKQGHLEVLKILLETFPNLAMTTDLSCTTALHTAATQG 269

Query:   177 SAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANR 236
               ++V  +L+    + A+  + K N +  T LH A R+  V+VVK LI  DP + +  ++
Sbjct:   270 HIDVVNLLLET-DSNLAK--IAKNNGK--TALHSAARMGHVEVVKSLIGKDPSIGFRTDK 324

Query:   237 NSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKIL 296
               +T L+MAV   +  IV E+++  P+ A   +L   + + NTPLH A     + + + L
Sbjct:   325 KGQTALHMAVKGQNDGIVVELVK--PDVA---VLSVEDNKGNTPLHIATNKGRIKIVRCL 379

Query:   297 IEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYP 356
             +  +       N+  +TPL ++   G+ ++V+ + +   + A +    +        T  
Sbjct:   380 VSFEGINLNPINKAGDTPLDVSEKIGNAELVSVLKEAGAATAKDLGKPQNPAKQLKQTV- 438

Query:   357 TDILERVLIVRGTFKPQEIQELSKNVGRGQYPNGILRVQTEKEPVDEEALKEMQSLHTVV 416
             +DI   V          ++Q+ S+  G       + ++    + +    L    +  TVV
Sbjct:   439 SDIKHEV--------QSQLQQ-SRQTGVR-----VQKIAKRLKKLHISGLNNAINSATVV 484

Query:   417 AALIATVTFAAGFTLPGGYWG--KEGPIPGTPILIKNAGFRAFVVSDVIAMVLSVSAIFI 474
             A LIATV FAA FT+PG Y     +G + G   +   A F  F + D +A+ +S++ + +
Sbjct:   485 AVLIATVAFAAIFTIPGQYEEDRSKGELLGQAHIANKAPFLVFFIFDSLALFISLAVVVV 544

Query:   475 YFLTPAKTLRQTKFLSDMPHNFIMVSLLAMVVAFITGTYAVLAPSA-GLSVATCVLGSSF 533
                      +  K L  + +  +  + L + +AF++ +Y V+      L+V   V+G + 
Sbjct:   545 QTSVVVIEQKAKKKLVFVINKLMWCACLFISIAFVSLSYIVVGKEEMWLAVCATVIGGTI 604

Query:   534 IL 535
             +L
Sbjct:   605 ML 606

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 126/506 (24%), Positives = 224/506 (44%)

Query:    64 VEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQP-IDL-----ERGVE 117
             VE I+   P+LL   N  G++ LH+AA+ G   IVE L+ F       D       +  +
Sbjct:    88 VEFIISTFPNLLQNVNLMGETTLHVAARAGSLNIVEILVRFITESSSYDAFIAAKSKNGD 147

Query:   118 SAARQILKMT-------------------NEEQNTPLHEAVRLRSVDVVKILIKADPHVS 158
             +A    LK                     N ++ +PL+ AV     ++V  ++++    S
Sbjct:   148 TALHAALKGKHVEVAFCLVSVKHDVSFDKNNDEASPLYMAVEAGYHELVLKMLESSSSPS 207

Query:   159 YSANRNS-ETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRV 217
               A+  S +++++ A+     +I+  +L+  P      ++E  NEE  T L     +   
Sbjct:   208 ILASMFSGKSVIHAAMKANRRDILGIVLRQDPG-----LIELRNEEGRTCLSYGASMGCY 262

Query:   218 DVVKILI----KADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKT 273
             + ++ ++    KA   + Y A+ +  TP++MA   G   I+ E L++CP+S  R++L   
Sbjct:   263 EGIRYILAEFDKAASSLCYVADDDGFTPIHMAAKEGHVRIIKEFLKHCPDS--RELLN-- 318

Query:   274 NEEQNTPLHEAVRLRSVDVAKILIEADP--HVPYSANRNSETPLYMAAANGSVKIVAKIL 331
             N+ QN   H A       V K L++ D    +    + N  TPL++A  +    IV  +L
Sbjct:   319 NQCQNI-FHVAAIAGKSKVVKYLLKLDEGKRMMNEQDINGNTPLHLATKH-RYPIVVNML 376

Query:   332 QKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRGTFKPQEIQELSK-NVGRGQYPNG 390
                    ++G + + AL+   +T   DI E +         + +  ++  + G    PN 
Sbjct:   377 TW-----NDGINLR-ALNNEGFT-ALDIAETMKDNNAYVLYKRLIWMALVSAGAPHGPNL 429

Query:   391 ILRVQTEKEPVDEEALKEMQSLHTVVAALIATVTFAAGFTLPGGYWGKEGPIPGTPILIK 450
             I    ++      E  K+  +   V A L+ATVTFAAG TLPGGY     P  G   L+ 
Sbjct:   430 IPLTVSQSSKQSPERYKDSVNTLMVTATLVATVTFAAGLTLPGGYMSS-APHLGMAALVN 488

Query:   451 NAGFRAFVVSDVIAMVLSVSAIFIYFLTPAKTLRQTKFLSDMPHNFIMVSLLAMVVAFIT 510
                F+ F++ + IAM  SV  +             TK    +    ++ ++++M++A + 
Sbjct:   489 KLNFKVFLLLNNIAMCTSVVTVMALIWAQLGDALLTKKAFRLALPLLLTAVVSMMMASVA 548

Query:   511 GTYAVLAPSAGLSVATCVLGSSFILF 536
             G   V++    LS     + S+F++F
Sbjct:   549 GLTLVVSDLPWLSHLVLAIDSAFLVF 574

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2009046 AT1G34050 "AT1G34050" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 117/500 (23%), Positives = 210/500 (42%)

Query:    82 GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
             G + LHLA + GH  IVE +I      P             ++ +TN + +TPLH A R 
Sbjct:    54 GGTVLHLATELGHKEIVEAIIKLC---P------------SLVGVTNLDGDTPLHFAARW 98

Query:   142 RSVDVVKILIKADPHVSYS-ANRNSETLLYMAVANGSAEIVAEILQNCPQ---------- 190
                 +V  ++ A  +  ++  N   ET   +A    + ++ + IL+              
Sbjct:    99 GHATIVAQIL-ASGYAEFTPVNGRGETAFVVACRYTNPDVASLILEETSSITIGEFYATF 157

Query:   191 ------SAARQMLEK-------TNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRN 237
                     AR+MLE+        + E +TPLH A     +++ K+L++ D  +    N++
Sbjct:   158 VLGEYTDIARRMLERFPKLAWNADGELSTPLHHACNANNLEITKMLLEIDESLAERVNKD 217

Query:   238 SETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILI 297
               TPL++A    S  I+ E     P      +L    E   T  H A   +++     + 
Sbjct:   218 GFTPLHLAAMKCSIPILKEFSDKAPRYF--DILTPAKE---TVFHLAAEHKNILAFYFMA 272

Query:   298 EADP--HVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSP-AHEGPDGKTALHAA-VY 353
             E+    ++ +  +R   T L+ A  +    ++  I  +     + +   G  A+    V 
Sbjct:   273 ESPDRNNLLHQVDRYGNTVLHTAVMSSCYSVIVSITYETTIDLSAKNNRGLKAVDLINVD 332

Query:   354 TYPTDILERVLI-----VRGTFKPQEIQELSKNVG-RGQYPN-GILRVQTEKEP-VDEEA 405
                   + R L      +R    P   Q+ +KN+G   +Y    I    +++E  +  EA
Sbjct:   333 DEDYSKISRWLRFDAKQIRSLSDPNH-QQGNKNMGVLSEYKKMQIFETPSKRESKMHAEA 391

Query:   406 LKEMQSLHTVVAALIATVTFAAGFTLPGGYWGKEGPIPGTPILIKNAGFRAFVVSDVIAM 465
             L   ++  T+VA LIA+V F  G   PGG + +EGP  G     +   F+ F +S+ IA+
Sbjct:   392 LLNARNTITIVAVLIASVAFTCGINPPGGVY-QEGPYKGKSTAGRTLAFQVFSISNNIAL 450

Query:   466 VLSVS-AIFIYFLTPAKTLRQTKFLSDMPHNFIMVSLLAMVVAFITGTYAVLAPSAGLS- 523
               S+   I +  + P +T     FL  + H  + V++ +M +A+++    ++    G   
Sbjct:   451 FTSLCIVILLVSIIPYRTRPLKNFLK-LTHRILWVAVASMALAYVSAASIIIPHVEGKRW 509

Query:   524 VATCVLGSSFILFAFANTFM 543
             + T VL  S ++      FM
Sbjct:   510 LFTTVLSISTLMLGGLFAFM 529

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128791 AT4G03470 [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 2.4e-20, P = 2.4e-20
 Identities = 132/514 (25%), Positives = 230/514 (44%)

Query:    64 VEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDL-ERGVESAARQ 122
             V+ I+  C  LL ++N+K   PLH+AA+ GH A+VE L+         L E   E     
Sbjct:   135 VKNIVSECSCLLMESNSKDQLPLHVAARMGHLAVVEDLVASVTFFSARLAEEDREILNPY 194

Query:   123 ILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVA 182
             +LK  N +  T L+ A++    +V   L+ A+   S+ A ++  + LY+AV    A +V 
Sbjct:   195 LLKDINGD--TALNLALKGHYTEVALCLVNANRQASFLACKDGISPLYLAVEAKDASLVK 252

Query:   183 EILQNC-PQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETP 241
              +L N  PQ   R+ L    E +    H A+     D++ +++   P +    +    T 
Sbjct:   253 AMLGNDGPQ---RKNLNL--EGRKYLAHAALNSLSTDILDVILNEYPSLVDERDEEGRTC 307

Query:   242 LYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADP 301
             L    + G  + V  +L       +R+ +   +++ + P+H AV    + V K + +  P
Sbjct:   308 LSFGASIGYHKGVCNLLNR-----SRKGVFVCDDDGSYPIHLAVEKGRIKVVKEICKRCP 362

Query:   302 HVPYSANRNSETPLYMAAANGSVKIVAKIL--QKCPSPAHEGP-DGKTALH-AAVYTYPT 357
             +     N+  +  L++AA +G  +I+  +   ++    A+E   DG T LH A +Y  P 
Sbjct:   363 YSKLLLNKKGQNLLHIAAESGKFRILRHLTAHEQINHLANEKDVDGNTPLHLATIYWRPR 422

Query:   358 DILE----RVLIVRGT------------FKPQEI-QELSKNVGRGQ--YPNGILRVQT-- 396
              + E    + L+++               +P  I +E    +   Q  + N      T  
Sbjct:   423 AVRELGGKKNLLIQNNNGLVALDIAESKLQPHYIFRERLTLLALVQLHFQNDPRCAHTMI 482

Query:   397 EKEPV-DEEALKEMQSLHTVVAALIATVTFAAGFTLPGGYWGKEG-PIPGTPILIKNAGF 454
             +  P+  +   K+  +   VVAALI TVTF +GFT+PGG+  K+  P  G   LI N   
Sbjct:   483 QTRPIMPQGGNKDYINALLVVAALITTVTFTSGFTIPGGF--KDSTPNVGMANLITNPRL 540

Query:   455 RAFVVSDVIAMVLSVSAIFIYFLTPAKTLRQTKFLSDMPHNFIMVSLLAMVVAFITGTYA 514
               F++ D++A+  S  A+    L  A+    T + S +     M+SL   +       + 
Sbjct:   541 ILFLIFDILALETSFLAVVSLIL--AQLGDPTLYQSSV--RVAMISLYFAMYFMTLAFFF 596

Query:   515 VLAPSAG-----LSVATCVLGSSFILFAFANTFM 543
             V+  +AG     + V  C++  S +  AF+  FM
Sbjct:   597 VMVIAAGNVRWLVYVIFCLI-FSILTLAFSR-FM 628

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 8.3e-20, P = 8.3e-20
 Identities = 117/475 (24%), Positives = 209/475 (44%)

Query:    83 DSPLHLAAKKGHTAIVEFLIVFANRQ------PIDLERGVESAARQILKMTNEEQNTPLH 136
             D+ LHLAA++G  A V+ ++   + Q        D +  V      ++   NE   TPL 
Sbjct:    89 DTELHLAAQRGDLASVKQILSDIDSQITGTITGADFDDEVAQIMTSVVNEVNELGETPLF 148

Query:   137 EAVRLRSVDVVKILIKADPHVSY-SANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQ 195
              A    ++DVVK L+      S    N +    L++A + G   IV  +L++ PQ     
Sbjct:   149 TAAEKGNIDVVKELLPYTTIESLMQKNLSGFDALHIACSQGHRSIVQLLLEHEPQ----- 203

Query:   196 MLEKTNEEQN-TPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIV 254
              L KT  + N TPL  A      +VV  L+  D  +   +  N +  L++A   G  +IV
Sbjct:   204 -LSKTVAQSNATPLVSAATRGHSEVVNELLAKDSSLLEISRSNGKNALHLAARQGHVDIV 262

Query:   255 AEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETP 314
               +L   P+ A R     T+++  T LH AV+  S  V ++L+ ADP +    ++   T 
Sbjct:   263 RTLLDKDPQLARR-----TDKKGQTSLHMAVKGVSSQVVRLLLRADPAIVMLPDKFGNTV 317

Query:   315 LYMAAANGSVKIVAKILQKCPSPAHE-GPDGKTALHAA---VYTYPTDILERVLIVRGTF 370
             L++A      +IV ++LQ   +  +    D KTA   A    ++  T  ++ +L   G  
Sbjct:   318 LHIATRKKRAEIVNELLQLPDTNVNALTRDHKTAYDIAEGLTHSEETAEIKEILSRCGAL 377

Query:   371 KPQEIQ----ELSKNVGRGQYPNGILRVQTEKEPVDEEAL-KEMQSLH------TVVAAL 419
             K  E+     EL K V   +        QT K   + + + KE++ LH         +  
Sbjct:   378 KANELNQPRDELRKTVTEIKKDVHTQLEQTRKTNKNVDGIAKELRKLHRAGINNATNSVT 437

Query:   420 IATVTFAA-GFTLPGGYWGKEGPIPGTPILIKNAGFRAFVVSDVIAMVLSVSAIFIYF-L 477
             +  V FA   F       G +    G  +++    F+ F + + IA+  S++ + +   L
Sbjct:   438 VVAVLFATVAFAAIFTVPGGDDD-HGVAVMVHATSFKIFFIFNAIALFTSLAVVVVQITL 496

Query:   478 TPAKTLRQTKFLSDMPHNFIMVSLLAMVVAFITGTYAVLAP-SAGLSVATCVLGS 531
                +T  + + + ++ +  + ++ +   VAFI+ +Y V+   +   +V   V+G+
Sbjct:   497 VRGETKTERRVV-EVINKLMWLASVCTTVAFISSSYIVVGRRNRYAAVVVTVIGT 550

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 2.3e-19, P = 2.3e-19
 Identities = 119/432 (27%), Positives = 194/432 (44%)

Query:   120 ARQILK-MTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSA 178
             A Q L  + N +  +PL+ AV     D+ K + +   + S S +  +  +   ++ +G+ 
Sbjct:   232 AEQSLSFVANNDGVSPLYLAVEAGQADLAKTMWQHSNNGSSSTSTLASKIGGRSIVHGAM 291

Query:   179 EIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVD-VVKILIKADPHVPYSANRN 237
             +   + +     S    ++    +E  T L     L   +    +L KA   V Y ++ +
Sbjct:   292 KARRKDILVAILSEDASLIN-FRDEGRTCLSFGASLGYYEGFCYLLDKALDSV-YVSDDD 349

Query:   238 SETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILI 297
                P++MAV  G  +I+  IL+ CP+  A ++L++ N  QN  LH A +   ++V K ++
Sbjct:   350 GSFPIHMAVKYGYVKILKAILKRCPD--ALELLDREN--QNV-LHVAAKNGKIEVLKFIL 404

Query:   298 EA--DPHVPYSANR---NSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAV 352
                 D +     N    N  TPL++A  N   K+V+ +            D KT  H  V
Sbjct:   405 RCCKDKNKEKLINEEDANGNTPLHLATKNWHPKVVSMLTWD------NRVDLKTLNHDGV 458

Query:   353 YTYPTDILERVLIVRGTFKPQEIQELSKNVGRGQYPNGILRVQTEKEPVDEEALKEMQSL 412
                  DI E+ +    TF  +       + G  + P  IL     +   D    K+  + 
Sbjct:   459 TAL--DIAEKNMDSSYTFFERLTWMALISAGAPRGPKLILSTPVTQNS-DGGKYKDRVNT 515

Query:   413 HTVVAALIATVTFAAGFTLPGGYWGKEGPIPGTPILIKNAGFRAFVVSDVIAMVLSVSAI 472
               +VA L+AT+TF AGFTLPGGY G   P  G   L K   F+ F+V D +AM  S+  I
Sbjct:   516 LLLVATLVATMTFTAGFTLPGGYNGSV-PNFGMATLAKKTAFQVFLVFDTLAMYCSIITI 574

Query:   473 --FIYFLTPAKTLRQTKFLSDMPHNFIMVSLLAMVVAFITGTYAVLAPSAGLSVATCVLG 530
                I+      +L    F   +P   + ++L +M +AF+ GTYA +    GL +   VL 
Sbjct:   575 VALIWAQLGDLSLIMKAFNLALP--LLGLALTSMSIAFMAGTYAAVY---GLLIVG-VLT 628

Query:   531 SSFI--LFAFAN 540
             SS++  L  F N
Sbjct:   629 SSYLDFLLLFVN 640

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1SE30 ANK1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 265 (98.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 98/333 (29%), Positives = 158/333 (47%)

Query:    68 LDLCPSLLFQANAKGD-------SPLHLAAKKGHTAIVEFLI---VFANRQPIDLERGVE 117
             LD C  LL Q NA+ D       +PLH+AA  GH  + + L+      N + ++    + 
Sbjct:   351 LD-CVRLLLQYNAEIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLH 409

Query:   118 SAARQ--------ILKM------TNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANR 163
              A ++        +LK         E   TPLH A  +  + +VK L++ D   + S N 
Sbjct:   410 IACKKNHIRVMELLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRDASPNVS-NV 468

Query:   164 NSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKIL 223
               ET L+MA   G  E+   +LQN  +  A     K  ++Q TPLH A R+   ++VK+L
Sbjct:   469 KVETPLHMAARAGHTEVAKYLLQNKAKVNA-----KAKDDQ-TPLHCAARIGHTNMVKLL 522

Query:   224 IKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHE 283
             ++ + + P  A     TPL++A   G  E    +L+   + A++  + K      TPLH 
Sbjct:   523 LENNAN-PNLATTAGHTPLHIAAREGHVETALALLE---KGASQACMTKKGF---TPLHV 575

Query:   284 AVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPD 343
             A +   V VA++L+E D H P +A +N  TPL++A  +  + IV  +L +  SP     +
Sbjct:   576 AAKYGKVRVAELLLEHDAH-PNAAGKNGLTPLHVAVHHNHLDIVKLLLPRGGSPHSPAWN 634

Query:   344 GKTALHAAVYTYPTDILERVLIVRGTFKPQEIQ 376
             G T LH A      ++   +L   G+   + +Q
Sbjct:   635 GYTPLHIAAKQNQMEVARSLLQYGGSANAESVQ 667

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0030507 "spectrin binding" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0014731 "spectrin-associated cytoskeleton" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	556
pfam13962	114	pfam13962, PGG, Domain of unknown function	6e-32
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-24
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-23
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-20
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-17
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-15
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-11
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	1e-11
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-11
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-10
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-10
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-08
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-08
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-07
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	7e-07
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	1e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	7e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	5e-05
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.001
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.003
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.004

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  118 bits (299), Expect = 6e-32
 Identities = 48/115 (41%), Positives = 65/115 (56%), Gaps = 3/115 (2%)

Query: 403 EEALKEMQSLHTVVAALIATVTFAAGFTLPGGYWGK-EGPIPGTPILIKNAG-FRAFVVS 460
            E L++ ++   VVA LIATVTFAAGFT PGGYW    G   GTPIL      F+AF VS
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVS 60

Query: 461 DVIAMVLSVSAIFIYFLTPAKTLRQTKFLSDMPHNFIMVSLLAMVVAFITGTYAV 515
           + IA V S+ A+ +  L    +  +           + +SLL+++VAF  G+Y V
Sbjct: 61  NTIAFVASLVAVIL-LLYIVPSFSRRLPRLLALLTLLWLSLLSLMVAFAAGSYRV 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 97.1 bits (242), Expect = 6e-24
 Identities = 43/134 (32%), Positives = 77/134 (57%), Gaps = 12/134 (8%)

Query: 200 TNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQ 259
            +E+  TPLH A     ++VVK+L++    V  + + +  TPL++A  NG  EIV  +L+
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 260 NCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETPLYM 317
              +      +   +++ NTPLH A R  ++DV K+L++  AD +     +++  TPL++
Sbjct: 62  KGAD------VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNAR---DKDGRTPLHL 112

Query: 318 AAANGSVKIVAKIL 331
           AA NG +++V  +L
Sbjct: 113 AAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 94.4 bits (235), Expect = 4e-23
 Identities = 44/135 (32%), Positives = 73/135 (54%), Gaps = 12/135 (8%)

Query: 126 MTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEIL 185
             +E+  TPLH A     ++VVK+L++    V  + + +  T L++A  NG  EIV  +L
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 186 QNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLY 243
           +          +   +++ NTPLH A R   +DVVK+L+K  AD +     +++  TPL+
Sbjct: 61  EKGAD------VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNAR---DKDGRTPLH 111

Query: 244 MAVANGSAEIVAEIL 258
           +A  NG  E+V  +L
Sbjct: 112 LAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 85.5 bits (212), Expect = 6e-20
 Identities = 36/130 (27%), Positives = 71/130 (54%), Gaps = 7/130 (5%)

Query: 235 NRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAK 294
           + +  TPL++A +NG  E+V  +L+N  +  A+      + +  TPLH A +   +++ K
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVNAK------DNDGRTPLHLAAKNGHLEIVK 57

Query: 295 ILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYT 354
           +L+E    V  + +++  TPL++AA NG++ +V  +L+          DG+T LH A   
Sbjct: 58  LLLEKGADV-NARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKN 116

Query: 355 YPTDILERVL 364
              ++++ +L
Sbjct: 117 GHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 78.6 bits (194), Expect = 1e-17
 Identities = 47/157 (29%), Positives = 72/157 (45%), Gaps = 32/157 (20%)

Query: 29  VTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKGDSPLHL 88
             D    T LH+     HL              E V+ +L+    +    +  G +PLHL
Sbjct: 2   ARDEDGRTPLHLAASNGHL--------------EVVKLLLENGADV-NAKDNDGRTPLHL 46

Query: 89  AAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVK 148
           AAK GH  IV+ L          LE+G        +   +++ NTPLH A R  ++DVVK
Sbjct: 47  AAKNGHLEIVKLL----------LEKGA------DVNARDKDGNTPLHLAARNGNLDVVK 90

Query: 149 ILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEIL 185
           +L+K    V+   +++  T L++A  NG  E+V  +L
Sbjct: 91  LLLKHGADVNAR-DKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 72.0 bits (177), Expect = 3e-15
 Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 2/96 (2%)

Query: 273 TNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQ 332
            +E+  TPLH A     ++V K+L+E    V  + + +  TPL++AA NG ++IV  +L+
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 333 KCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRG 368
           K         DG T LH A      D++ ++L+  G
Sbjct: 62  KGADVNARDKDGNTPLHLAARNGNLDVV-KLLLKHG 96

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 65.0 bits (159), Expect = 3e-13
 Identities = 25/96 (26%), Positives = 53/96 (55%), Gaps = 9/96 (9%)

Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
           LH A +   +++VK+L++    V      +++T L++A  NG+ EIV  +L++  +    
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADV---NLGDTDTALHLAARNGNLEIVKLLLEHGAD---- 53

Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHV 303
             +   +++ NT LH A R  ++++ K+L+E    +
Sbjct: 54  --VNAKDKDGNTALHLAARNGNLEIVKLLLEHGADI 87

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 64.6 bits (158), Expect = 4e-13
 Identities = 25/96 (26%), Positives = 52/96 (54%), Gaps = 9/96 (9%)

Query: 135 LHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAAR 194
           LH A +  ++++VK+L++    V+       +T L++A  NG+ EIV  +L++       
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT---DTALHLAARNGNLEIVKLLLEHGAD---- 53

Query: 195 QMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHV 230
             +   +++ NT LH A R   +++VK+L++    +
Sbjct: 54  --VNAKDKDGNTALHLAARNGNLEIVKLLLEHGADI 87

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 60.7 bits (148), Expect = 1e-11
 Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 19/104 (18%)

Query: 56  ISSESTEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERG 115
             + + E V+ +L+    +        D+ LHLAA+ G+  IV+ L          LE G
Sbjct: 5   AKNGNLELVKLLLEKGADVNLGDT---DTALHLAARNGNLEIVKLL----------LEHG 51

Query: 116 VESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSY 159
            +      +   +++ NT LH A R  ++++VK+L++    ++ 
Sbjct: 52  AD------VNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINL 89

Length = 91

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 66.6 bits (162), Expect = 1e-11
 Identities = 53/205 (25%), Positives = 100/205 (48%), Gaps = 21/205 (10%)

Query: 133 TPLHEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQ 190
           +P+  A++ R  + +K+L+K  A P V Y    + E+ L+ AV  G  + V E+L     
Sbjct: 37  SPIKLAMKFRDSEAIKLLMKHGAIPDVKYP---DIESELHDAVEEGDVKAVEELLDL--G 91

Query: 191 SAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVAN 248
             A  +  K   +  TPLH A  L+++D++K+LI   ADP +P   N +  +PL++AV  
Sbjct: 92  KFADDVFYK---DGMTPLHLATILKKLDIMKLLIARGADPDIP---NTDKFSPLHLAVMM 145

Query: 249 GSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSAN 308
           G  + +  ++ +      +  L+  +    TPL  A+    + + K+L+++  ++ Y   
Sbjct: 146 GDIKGIELLIDH------KACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGK 199

Query: 309 RNSETPLYMAAANGSVKIVAKILQK 333
                 L  A  N  + IV   +++
Sbjct: 200 NGCVAALCYAIENNKIDIVRLFIKR 224

Length = 413

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 66.1 bits (161), Expect = 1e-11
 Identities = 47/229 (20%), Positives = 95/229 (41%), Gaps = 25/229 (10%)

Query: 124 LKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAE 183
           + ++ +E  TPL +A+R     +V++ IK    +++  N      L  A+  G+ +I+  
Sbjct: 28  INISVDETTTPLIDAIRSGDAKIVELFIKHGADINH-INTKIPHPLLTAIKIGAHDIIKL 86

Query: 184 ILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLY 243
           ++ N   ++   +     +   T L           + + IK         +   +T L+
Sbjct: 87  LIDNGVDTSILPIPCIEKDMIKTILDCG--------IDVNIK---------DAELKTFLH 129

Query: 244 MAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHV 303
            A+  G  E +  +     E  A   +E  N     P+H A++    D+ K+L+E   + 
Sbjct: 130 YAIKKGDLESIKMLF----EYGADVNIEDDN--GCYPIHIAIKHNFFDIIKLLLEKGAYA 183

Query: 304 PYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAV 352
               + N E+PL+ AA  G    +  ++       ++  +G T LH A+
Sbjct: 184 NVK-DNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAI 231

Length = 434

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 19/102 (18%)

Query: 86  LHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVD 145
           LHLAAK G+  +V+ L          LE+G          +   + +T LH A R  +++
Sbjct: 1   LHLAAKNGNLELVKLL----------LEKGA--------DVNLGDTDTALHLAARNGNLE 42

Query: 146 VVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQN 187
           +VK+L++    V+ + +++  T L++A  NG+ EIV  +L++
Sbjct: 43  IVKLLLEHGADVN-AKDKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 61.4 bits (148), Expect = 1e-10
 Identities = 44/166 (26%), Positives = 69/166 (41%), Gaps = 19/166 (11%)

Query: 133 TPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGS-----AEIVAEILQN 187
            PLH A       +VK+L+ +   V+   + + +T L++A  NG+      E+   +L+ 
Sbjct: 75  LPLHSAASKGDDKIVKLLLASGADVNAK-DADGDTPLHLAALNGNPPEGNIEVAKLLLEA 133

Query: 188 CPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVA 247
                        +E+ NTPLH A      D+V++L++A    P S N    T L  A  
Sbjct: 134 GADLDV---NNLRDEDGNTPLHWAALNGDADIVELLLEAGAD-PNSRNSYGVTALDPAAK 189

Query: 248 NGSAEIV---------AEILQNCPESAARQMLEKTNEEQNTPLHEA 284
           NG  E+V           +L+   E  A   + K N    T L  A
Sbjct: 190 NGRIELVKLLLDKGLHLSLLKFNLEGVANANVSKRNILNLTSLIIA 235

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 281 LHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHE 340
           LH A +  ++++ K+L+E    V      +++T L++AA NG+++IV  +L+       +
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADV---NLGDTDTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 341 GPDGKTALHAAVYTYPTDILERVL 364
             DG TALH A      +I++ +L
Sbjct: 58  DKDGNTALHLAARNGNLEIVKLLL 81

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 61.6 bits (150), Expect = 4e-10
 Identities = 53/229 (23%), Positives = 96/229 (41%), Gaps = 40/229 (17%)

Query: 133 TPLHEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLL-----YMAVANGSAEIVAEIL 185
            PL+ A   R++DVVKIL+   AD + S    +N+ T L              EIV  +L
Sbjct: 37  LPLYLAKEARNIDVVKILLDNGADINSS---TKNNSTPLHYLSNIKYNLTDVKEIVKLLL 93

Query: 186 QNCPQSAARQMLEKTNEEQNTPLHEAV--RLRRVDVVKILIKADPHVPYSANRNSETPLY 243
           +          +   +    TPL  A+  +     +V+ L+    +V    N + E  L+
Sbjct: 94  EYGAN------VNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLH 146

Query: 244 MAVANGSAEIVAEILQNCPESAA--------RQMLEK------TNEEQNTPLHEAVRLRS 289
           + + +   ++  +IL+   +             +L         +    TPLH AV   +
Sbjct: 147 LYLESNKIDL--KILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNN 204

Query: 290 VDVAKILIE--ADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPS 336
            +  K L++  A+P++    N+  +TPL++A  N + +I   +L   PS
Sbjct: 205 PEFVKYLLDLGANPNL---VNKYGDTPLHIAILNNNKEIFKLLLNNGPS 250

Length = 422

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 56.1 bits (136), Expect = 5e-10
 Identities = 25/92 (27%), Positives = 51/92 (55%), Gaps = 9/92 (9%)

Query: 242 LYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADP 301
           L++A  NG+ E+V  +L+   +            + +T LH A R  ++++ K+L+E   
Sbjct: 1   LHLAAKNGNLELVKLLLEKGAD--------VNLGDTDTALHLAARNGNLEIVKLLLEHGA 52

Query: 302 HVPYSANRNSETPLYMAAANGSVKIVAKILQK 333
            V  + +++  T L++AA NG+++IV  +L+ 
Sbjct: 53  DV-NAKDKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 56.6 bits (136), Expect = 2e-08
 Identities = 76/292 (26%), Positives = 133/292 (45%), Gaps = 46/292 (15%)

Query: 84  SPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRS 143
           +P+H AA++G+  +V  L+ +              A   I+ +   +  + L  AV  ++
Sbjct: 180 TPIHYAAERGNAKMVNLLLSYG-------------ADVNIIAL---DDLSVLECAVDSKN 223

Query: 144 VDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEE 203
           +D +K +I    ++    N+N  +LL  A+ N   E  + +L +   S     +   ++ 
Sbjct: 224 IDTIKAIIDNRSNI----NKNDLSLL-KAIRNEDLE-TSLLLYDAGFS-----VNSIDDC 272

Query: 204 QNTPLHEAVR---LRRVDVVKILIK-ADPHVPYSANRNSETPLYMAVANG--SAEIVAEI 257
           +NTPLH A +   L R+ V K+L + AD +   + N   ETPLY+   NG  +  I   I
Sbjct: 273 KNTPLHHASQAPSLSRL-VPKLLERGADVN---AKNIKGETPLYLMAKNGYDTENIRTLI 328

Query: 258 LQNCPESAARQMLEKTNEEQNTPLHEAVRL-RSVDVAKILIEADPHVPYSANRNSETPLY 316
           +     +AA ++         TPLH+A  L R+ D+   L+E   +V  + +   +TP++
Sbjct: 329 MLGADVNAADRLY-------ITPLHQASTLDRNKDIVITLLELGANVN-ARDYCDKTPIH 380

Query: 317 MAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRG 368
            AA   +V I+  +L              TALH A+      +  + LI RG
Sbjct: 381 YAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRG 432

Length = 682

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 54.4 bits (130), Expect = 3e-08
 Identities = 36/157 (22%), Positives = 62/157 (39%), Gaps = 27/157 (17%)

Query: 4   KLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEF 63
            L+ AA+KGD +  + +     +    D   +T LH+  +  +               E 
Sbjct: 76  PLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGN---------IEV 126

Query: 64  VEQILDL--CPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAAR 121
            + +L+      +    +  G++PLH AA  G   IVE L          LE G +  +R
Sbjct: 127 AKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELL----------LEAGADPNSR 176

Query: 122 QILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVS 158
                 N    T L  A +   +++VK+L+    H+S
Sbjct: 177 ------NSYGVTALDPAAKNGRIELVKLLLDKGLHLS 207

Length = 235

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 56/239 (23%), Positives = 108/239 (45%), Gaps = 22/239 (9%)

Query: 134 PLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAA 193
           PLH+AV  R++DVVK L+    +V+   +R+  T L++     +   + E++++  + + 
Sbjct: 40  PLHQAVEARNLDVVKSLLTRGHNVNQPDHRDL-TPLHIICKEPNKLGMKEMIRSINKCSV 98

Query: 194 RQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEI 253
              L            +A   R V++ KI++       Y   +  +  +Y+   +    I
Sbjct: 99  FYTLVAIK--------DAFNNRNVEIFKIILTN----RYKNIQTIDL-VYIDKKSKDDII 145

Query: 254 VAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNS 311
            AEI +      A  +  K   + NT LH A   +   + ++L+   A+ ++P   ++ +
Sbjct: 146 EAEITKLLLSYGA-DINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIP---DKTN 201

Query: 312 ETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAV-YTYPTDILERVLIVRGT 369
            +PL+ A  + +  IV  +L+   S       G T LH +V Y    DIL ++L+  G 
Sbjct: 202 NSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDIL-KLLLEHGV 259

Length = 477

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 34/171 (19%)

Query: 81  KGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVR 140
           KG++ LH A +     + E L+ +              A   I   TN   N+PLH AV+
Sbjct: 167 KGNTALHYATENKDQRLTELLLSYG-------------ANVNIPDKTN---NSPLHHAVK 210

Query: 141 LRSVDVVKILIKADPHVSYSANRNS--ETLLYMAVAN-GSAEIVAEILQNCPQSAARQML 197
             +  +V IL++   + + +  R+    T L+++V      +I+  +L++     A+  +
Sbjct: 211 HYNKPIVHILLE---NGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYI 267

Query: 198 EKTNEEQNTPLHEAVRLRRVDVVKILI--KADPHVPYSANRNSETPLYMAV 246
                   T LH +  ++    +K+L+   AD +   S N    TPL  AV
Sbjct: 268 LGL-----TALHSS--IKSERKLKLLLEYGADIN---SLNSYKLTPLSSAV 308

Length = 477

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 50.2 bits (119), Expect = 7e-07
 Identities = 42/208 (20%), Positives = 84/208 (40%), Gaps = 21/208 (10%)

Query: 105 ANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL--RSVDVVKILIKADPHVSYSAN 162
            N+  +DL          +      ++   L+  + L   +     +L         + +
Sbjct: 11  INKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARD 70

Query: 163 RNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVR-----LRRV 217
            +    L+ A + G  +IV  +L +     A+      + + +TPLH A          +
Sbjct: 71  LDGRLPLHSAASKGDDKIVKLLLASGADVNAK------DADGDTPLHLAALNGNPPEGNI 124

Query: 218 DVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNE 275
           +V K+L++  AD  V    + +  TPL+ A  NG A+IV  +L+   +  +R      N 
Sbjct: 125 EVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSR------NS 178

Query: 276 EQNTPLHEAVRLRSVDVAKILIEADPHV 303
              T L  A +   +++ K+L++   H+
Sbjct: 179 YGVTALDPAAKNGRIELVKLLLDKGLHL 206

Length = 235

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 50.8 bits (121), Expect = 1e-06
 Identities = 45/202 (22%), Positives = 85/202 (42%), Gaps = 34/202 (16%)

Query: 83  DSPLHLAAKKGHTAIVEFLIV---FANRQPIDLERGVESAARQILKMTNEEQNTPLHEAV 139
           +S LH A ++G    VE L+    FA+                   +  ++  TPLH A 
Sbjct: 69  ESELHDAVEEGDVKAVEELLDLGKFAD------------------DVFYKDGMTPLHLAT 110

Query: 140 RLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQML 197
            L+ +D++K+LI   ADP +    N +  + L++AV  G  + +  ++ +      +  L
Sbjct: 111 ILKKLDIMKLLIARGADPDIP---NTDKFSPLHLAVMMGDIKGIELLIDH------KACL 161

Query: 198 EKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEI 257
           +  +    TPL  A+    + + K+L+ +  ++ Y         L  A+ N   +IV   
Sbjct: 162 DIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLF 221

Query: 258 LQNCPESAARQMLEKTNEEQNT 279
           ++   +     M+E   EE   
Sbjct: 222 IKRGADCNIMFMIE--GEECTI 241

Length = 413

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 57/265 (21%), Positives = 110/265 (41%), Gaps = 45/265 (16%)

Query: 77  QANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPI-DLERGVESAAR----QILKM--TNE 129
           Q + +  +PLH+  K+ +   ++ +I   N+  +      ++ A      +I K+  TN 
Sbjct: 65  QPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNR 124

Query: 130 EQNTPLHEAVRLRSVD--------VVKILIKADPHVSYSANRNSETLLYMAVANGSAEIV 181
            +N    + V +            + K+L+     ++        T L+ A  N    + 
Sbjct: 125 YKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLT 184

Query: 182 AEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSE-- 239
             +L      A   + +KTN   N+PLH AV+     +V IL++        A+ ++   
Sbjct: 185 ELLLS---YGANVNIPDKTN---NSPLHHAVKHYNKPIVHILLE------NGASTDARDK 232

Query: 240 ---TPLYMAVAN-GSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKI 295
              TPL+++V      +I+  +L++  +  A+  +        T LH +  ++S    K+
Sbjct: 233 CGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGL-----TALHSS--IKSERKLKL 285

Query: 296 LIE--ADPHVPYSANRNSETPLYMA 318
           L+E  AD +   S N    TPL  A
Sbjct: 286 LLEYGADIN---SLNSYKLTPLSSA 307

Length = 477

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 50.4 bits (121), Expect = 2e-06
 Identities = 68/283 (24%), Positives = 111/283 (39%), Gaps = 43/283 (15%)

Query: 82  GDSPLHLAAKKGH---TAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEA 138
           G +PLHL           IV  L          LE G +  A +    T      PLH  
Sbjct: 47  GKTPLHLYLHYSSEKVKDIVRLL----------LEAGADVNAPERCGFT------PLHLY 90

Query: 139 VRLRSV-DVVKILIKADPHVSYSANRNSETLL--YMAVANGSAEIVAEILQNCPQSAARQ 195
           +   +  DV+K+LIKA   V+   ++   T L  Y++  N + +++  +L          
Sbjct: 91  LYNATTLDVIKLLIKAGADVNAK-DKVGRTPLHVYLSGFNINPKVIRLLL------RKGA 143

Query: 196 MLEKTNEEQNTPLHEAVRLRRVDV--VKILIKADPHVPYSANRNSETPL-YMAV-ANGSA 251
            +   +    TPL   ++ R  +V  +++LI A   V    +R   + L +        A
Sbjct: 144 DVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRF-RSLLHHHLQSFKPRA 202

Query: 252 EIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKI--LIEADPHVPYSANR 309
            IV E+++   + AA  ML       NTPLH      S   + +  L+ A   +    NR
Sbjct: 203 RIVRELIRAGCDPAATDMLG------NTPLHSMATGSSCKRSLVLPLLIAGISINAR-NR 255

Query: 310 NSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAV 352
             +TPL+ AA   + +   +++           DG T L   V
Sbjct: 256 YGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMV 298

Length = 471

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 47.9 bits (113), Expect = 4e-06
 Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 13/144 (9%)

Query: 215 RRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTN 274
                  +L         + + +   PL+ A + G  +IV  +L +  +  A+      +
Sbjct: 50  AASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAK------D 103

Query: 275 EEQNTPLHEAVR-----LRSVDVAKILIE--ADPHVPYSANRNSETPLYMAAANGSVKIV 327
            + +TPLH A         +++VAK+L+E  AD  V    + +  TPL+ AA NG   IV
Sbjct: 104 ADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIV 163

Query: 328 AKILQKCPSPAHEGPDGKTALHAA 351
             +L+    P      G TAL  A
Sbjct: 164 ELLLEAGADPNSRNSYGVTALDPA 187

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 43.0 bits (102), Expect = 7e-06
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 204 QNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVA 255
             T LH+A    R+++VK L++    +  + + +  T L++A  NG+ E++ 
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRT-DEDGNTALHIAAENGNLEVLK 51

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 277 QNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKIL 331
             T LH+A     +++ K L+E    +  + + +  T L++AA NG+++++  +L
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRT-DEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 16/70 (22%)

Query: 82  GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
           G + LH AA  G   +V++L+       I+               T+E+ NT LH A   
Sbjct: 1   GRTALHKAAISGRLELVKYLL--EKGVDIN--------------RTDEDGNTALHIAAEN 44

Query: 142 RSVDVVKILI 151
            +++V+K+L+
Sbjct: 45  GNLEVLKLLL 54

Length = 54

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 45.8 bits (109), Expect = 5e-05
 Identities = 58/265 (21%), Positives = 93/265 (35%), Gaps = 74/265 (27%)

Query: 82  GDSPLH--LAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAV 139
           G +PLH  L+    +  ++  L          L +G +  A  +  MT      PL   +
Sbjct: 117 GRTPLHVYLSGFNINPKVIRLL----------LRKGADVNALDLYGMT------PLAVLL 160

Query: 140 RLR--SVDVVKILIKADPHVSYSANRNSETLLYMAV-ANGSAEIVAEILQNCPQSAARQM 196
           + R  +V+++++LI A   V    +R    L +        A IV E+++     AA  M
Sbjct: 161 KSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDM 220

Query: 197 LEKTNEEQNTPLHEAV---RLRRVDVVKILIK-ADPHVPYSANRNSETPLYMAVANGSAE 252
           L       NTPLH        +R  V+ +LI     +     NR  +TPL+ A    +  
Sbjct: 221 LG------NTPLHSMATGSSCKRSLVLPLLIAGISINAR---NRYGQTPLHYAAVFNNPR 271

Query: 253 IVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSE 312
                                            RL       I + AD +     + +  
Sbjct: 272 ACR------------------------------RL-------IALGADINA---VSSDGN 291

Query: 313 TPLYMAAANGSVKIVAKILQKCPSP 337
           TPL +   N + + V   L K PS 
Sbjct: 292 TPLSLMVRNNNGRAVRAALAKNPSA 316

Length = 471

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 131 QNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVA 182
             T LH+A     +++VK L++    ++ + + +  T L++A  NG+ E++ 
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRT-DEDGNTALHIAAENGNLEVLK 51

Length = 54

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 27/125 (21%)

Query: 79  NAKGDSPLHLAAKKGH--TAIVEFLIVFANRQPIDLERGVESAARQILKM---------- 126
           N+ G++ LHL  +       I++ LI          ++GV+  A+  +            
Sbjct: 138 NSDGENLLHLYLESNKIDLKILKLLI----------DKGVDINAKNRVNYLLSYGVPINI 187

Query: 127 TNEEQNTPLHEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEI 184
            +    TPLH AV   + + VK L+   A+P++    N+  +T L++A+ N + EI   +
Sbjct: 188 KDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNL---VNKYGDTPLHIAILNNNKEIFKLL 244

Query: 185 LQNCP 189
           L N P
Sbjct: 245 LNNGP 249

Length = 422

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 11/22 (50%), Positives = 17/22 (77%)

Query: 81  KGDSPLHLAAKKGHTAIVEFLI 102
            G++PLHLAA+ GH  +V+ L+
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLL 22

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 18/56 (32%), Positives = 29/56 (51%)

Query: 296 LIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAA 351
           L+E  P    + + N  TPL++AA  G++++V  +L+          DG TAL  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 41.6 bits (97), Expect = 0.001
 Identities = 72/310 (23%), Positives = 125/310 (40%), Gaps = 86/310 (27%)

Query: 11  KGDIEPFREIARDELESIV-----------TDVMKNTVLHVNIMRSHLTLQTEEGEISSE 59
           K D+   + I  ++LE+ +            D  KNT LH       L+           
Sbjct: 239 KNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLS----------- 287

Query: 60  STEFVEQILDLCPSLLFQA------NAKGDSPLHLAAKKGH-TAIVEFLIVFANRQPIDL 112
                     L P LL +       N KG++PL+L AK G+ T  +  LI+         
Sbjct: 288 ---------RLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIM--------- 329

Query: 113 ERGVESAARQILKMTNEEQNTPLHEAVRL-RSVDVVKILIKADPHVS-----------YS 160
             G +  A       +    TPLH+A  L R+ D+V  L++   +V+           Y+
Sbjct: 330 -LGADVNA------ADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYA 382

Query: 161 ANRNS----ETLL-YMAVANGSAEIVAEILQ-----NCPQSAARQMLEK------TNEEQ 204
           A RN+     TLL Y A     ++ +   L        P  + + ++++       N++ 
Sbjct: 383 AVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDL 442

Query: 205 NTPLHEAVRLR-RVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPE 263
           +TPLH A +   ++DV+++L+     V  + N  ++ PL +A+      IV  +L    E
Sbjct: 443 STPLHYACKKNCKLDVIEMLLDNGADVN-AINIQNQYPLLIAL--EYHGIVNILLHYGAE 499

Query: 264 SAARQMLEKT 273
               ++L K+
Sbjct: 500 LRDSRVLHKS 509

Length = 682

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)

Query: 205 NTPLHEAVRLRRVDVVKILIK--ADPHV 230
           NTPLH A R   ++VVK+L++  AD + 
Sbjct: 3   NTPLHLAARNGHLEVVKLLLEAGADVNA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 34.8 bits (81), Expect = 0.004
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)

Query: 132 NTPLHEAVRLRSVDVVKILIK--ADPHV 157
           NTPLH A R   ++VVK+L++  AD + 
Sbjct: 3   NTPLHLAARNGHLEVVKLLLEAGADVNA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	556
PHA02946	446	ankyin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	99.97
PHA02792	631	ankyrin-like protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PF13962	113	PGG: Domain of unknown function	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.94
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.9
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.88
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.88
KOG0514	452	consensus Ankyrin repeat protein [General function	99.85
KOG0514	452	consensus Ankyrin repeat protein [General function	99.84
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.83
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.82
PHA02743	166	Viral ankyrin protein; Provisional	99.82
PHA02741	169	hypothetical protein; Provisional	99.82
PHA02741	169	hypothetical protein; Provisional	99.8
PHA02743	166	Viral ankyrin protein; Provisional	99.79
PHA02736	154	Viral ankyrin protein; Provisional	99.78
PHA02884	300	ankyrin repeat protein; Provisional	99.78
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.77
PHA02736	154	Viral ankyrin protein; Provisional	99.77
PHA02884	300	ankyrin repeat protein; Provisional	99.77
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.73
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.73
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.72
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.69
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.65
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.62
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.62
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.6
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.58
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.53
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.48
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.43
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.4
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.38
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.33
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.32
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.29
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.23
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.19
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.18
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.14
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.12
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.1
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.72
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.7
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.64
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.61
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.6
PF13606	30	Ank_3: Ankyrin repeat	98.58
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.54
PF13606	30	Ank_3: Ankyrin repeat	98.54
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.51
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.49
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.36
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.32
KOG0522	560	consensus Ankyrin repeat protein [General function	98.25
KOG0522	560	consensus Ankyrin repeat protein [General function	98.23
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.2
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.18
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.16
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.93
KOG0511	516	consensus Ankyrin repeat protein [General function	97.78
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.73
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.67
KOG2384	223	consensus Major histocompatibility complex protein	97.64
KOG0511	516	consensus Ankyrin repeat protein [General function	97.62
KOG2384	223	consensus Major histocompatibility complex protein	97.61
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.56
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.5
KOG2505	591	consensus Ankyrin repeat protein [General function	96.51
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.18
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.09
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.05
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.56
KOG2505	591	consensus Ankyrin repeat protein [General function	94.64
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.54
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.25
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	90.33
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	90.2
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	88.67
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	88.12

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.8e-44  Score=362.29  Aligned_cols=316  Identities=16%  Similarity=0.194  Sum_probs=269.3

Q ss_pred             HHHHHH--hcCCchHHHHhhhhhcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCC
Q 045083            4 KLYEAA--AKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAK   81 (556)
Q Consensus         4 ~L~~A~--~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   81 (556)
                      .||.++  ..++.++++.|+++|++++.+|.+|+||||+|+..|+.           +++++|++   . +.+++.+|.+
T Consensus        40 ~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~-----------eiv~lLL~---~-GAdin~~d~~  104 (446)
T PHA02946         40 ILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNN-----------RIVAMLLT---H-GADPNACDKQ  104 (446)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCH-----------HHHHHHHH---C-cCCCCCCCCC
Confidence            456554  45577899999999999999999999999999999999           99999954   3 5678899999


Q ss_pred             CChHHHHHHHhCc--HHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcc
Q 045083           82 GDSPLHLAAKKGH--TAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSY  159 (556)
Q Consensus        82 g~tpLh~A~~~g~--~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~  159 (556)
                      |.||||+|+..++  .+++++|+++|++.+               ...|.+|.|||| |+..|+.+++++|++.|.+.. 
T Consensus       105 g~TpLh~A~~~~~~~~e~v~lLl~~Gadin---------------~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~-  167 (446)
T PHA02946        105 HKTPLYYLSGTDDEVIERINLLVQYGAKIN---------------NSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEAR-  167 (446)
T ss_pred             CCCHHHHHHHcCCchHHHHHHHHHcCCCcc---------------cccCCCCCcHHH-HHHCCChHHHHHHHhcccccc-
Confidence            9999999998764  899999999998732               135789999998 666799999999999999987 


Q ss_pred             cccCCCCcHHHHHHHcC--CHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcC--CHHHHHHHHhcCCCCCccCC
Q 045083          160 SANRNSETLLYMAVANG--SAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLR--RVDVVKILIKADPHVPYSAN  235 (556)
Q Consensus       160 ~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~~~~~~~~~~  235 (556)
                      ..|..|.||||+|+..+  +.+++++|++++.+...      +|.+|.||||+|+..+  +.+++++|+. +.+ .+.+|
T Consensus       168 ~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~------~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gad-in~~d  239 (446)
T PHA02946        168 IVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSK------PDHDGNTPLHIVCSKTVKNVDIINLLLP-STD-VNKQN  239 (446)
T ss_pred             ccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcc------cCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCC-CCCCC
Confidence            78999999999988755  46999999999877543      7899999999999976  7899999985 666 47899


Q ss_pred             CCCCCHHHHHHHcCC-HHHHHHHHHcCChh--------------HHHHHhhhc-CCCCCchhHHHHhcCCHHHHHHHHhc
Q 045083          236 RNSETPLYMAVANGS-AEIVAEILQNCPES--------------AARQMLEKT-NEEQNTPLHEAVRLRSVDVAKILIEA  299 (556)
Q Consensus       236 ~~g~t~L~~A~~~g~-~~~v~~Ll~~~~~~--------------~~~~~~~~~-~~~g~t~Lh~A~~~g~~~~v~~Ll~~  299 (556)
                      .+|.||||+|+..++ .++++.|++++...              .....++.. +..|.||||+|+.+|+.+++++|+++
T Consensus       240 ~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~  319 (446)
T PHA02946        240 KFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDN  319 (446)
T ss_pred             CCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHC
Confidence            999999999999988 58999999886521              001123333 24588999999999999999999997


Q ss_pred             CCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHHHHHHhhC
Q 045083          300 DPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRG  368 (556)
Q Consensus       300 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~~~~~~~  368 (556)
                      |+        .|+||||+|+.+++.+++++|+.+|+++|.+ .+|+||||+|+..++.++++.++..+.
T Consensus       320 ~~--------~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~~-~~G~t~l~~a~~~~~~~~~~~ll~~~~  379 (446)
T PHA02946        320 DI--------ICEDAMYYAVLSEYETMVDYLLFNHFSVDSV-VNGHTCMSECVRLNNPVILSKLMLHNP  379 (446)
T ss_pred             CC--------ccccHHHHHHHhCHHHHHHHHHHCCCCCCCc-cccccHHHHHHHcCCHHHHHHHHhcCc
Confidence            63        5789999999999999999999999999986 589999999999999999998887543

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=2e-43  Score=347.53  Aligned_cols=311  Identities=23%  Similarity=0.321  Sum_probs=283.0

Q ss_pred             HHHHHHHhcCCchHHHHhhhhhcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCCC
Q 045083            3 RKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKG   82 (556)
Q Consensus         3 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g   82 (556)
                      .+||.|++....+.++.|++.|++....+..+.+|+|+|+..|+.           ++++.|+++    +.+++..|..|
T Consensus        90 ~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~~aplh~A~~~~~~-----------s~L~~Ll~~----~~dvnl~de~~  154 (929)
T KOG0510|consen   90 TPLHAAVEYNQGDKIQVLLSYGADTPLRNLNKNAPLHLAADSGNY-----------SCLKLLLDY----GADVNLEDENG  154 (929)
T ss_pred             chhHHHhhcchHHHHHHHHhcCCCCChhhhhccCchhhccccchH-----------HHHHHHHHh----cCCccccccCC
Confidence            579999999999999999999999999999999999999999999           999999664    47888999999


Q ss_pred             ChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHh-----cCCCC
Q 045083           83 DSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIK-----ADPHV  157 (556)
Q Consensus        83 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-----~~~~~  157 (556)
                      .||||+||..++.|..+.|++.++++                ...|.+|++|+|.|+++|..++.+..+.     ++..+
T Consensus       155 ~TpLh~A~~~~~~E~~k~Li~~~a~~----------------~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~i  218 (929)
T KOG0510|consen  155 FTPLHLAARKNKVEAKKELINKGADP----------------CKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHI  218 (929)
T ss_pred             CchhhHHHhcChHHHHHHHHhcCCCC----------------CcccCcCCchHHHHHHhcchhhhhhhhccccchhhccc
Confidence            99999999999999889999999884                4568999999999999999999999998     44555


Q ss_pred             cccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHH---------HHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCC
Q 045083          158 SYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAAR---------QMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADP  228 (556)
Q Consensus       158 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~---------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~  228 (556)
                      + ..+..+.+|||.|+..|+.++++..++.+......         .+++..|.+|.||||+|++.|+.++++.|+..|.
T Consensus       219 n-~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga  297 (929)
T KOG0510|consen  219 N-FDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGA  297 (929)
T ss_pred             c-cccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCC
Confidence            5 56778999999999999999999999988654332         3566789999999999999999999999999999


Q ss_pred             CCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCc--c
Q 045083          229 HVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPY--S  306 (556)
Q Consensus       229 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~--~  306 (556)
                      +. +.++.++.||||.|+..|+.+.++.||+ ..+..   +++..|..|.||||.|+++|+..+++.|++.|+...+  .
T Consensus       298 ~I-~~kn~d~~spLH~AA~yg~~ntv~rLL~-~~~~r---llne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e  372 (929)
T KOG0510|consen  298 SI-NSKNKDEESPLHFAAIYGRINTVERLLQ-ESDTR---LLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSE  372 (929)
T ss_pred             cc-cccCCCCCCchHHHHHcccHHHHHHHHh-CcCcc---ccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccc
Confidence            95 8889999999999999999999999999 22222   5788899999999999999999999999999999875  4


Q ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q 045083          307 ANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHA  350 (556)
Q Consensus       307 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~  350 (556)
                      .|.+|.||||.|+++|+..+|++|+.+|+++..+|+.|.+++++
T Consensus       373 ~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  373 ADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             cccCCchhhhHHHHhccHHHHHHHHHcCCceeeccccccccccc
Confidence            59999999999999999999999999999999999999999995

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.4e-42  Score=371.76  Aligned_cols=330  Identities=20%  Similarity=0.216  Sum_probs=223.4

Q ss_pred             HHHHHHHhcCCchHHHHhhhhhcc-cccccCCCCeeEEeeeccccccccccc----------------------------
Q 045083            3 RKLYEAAAKGDIEPFREIARDELE-SIVTDVMKNTVLHVNIMRSHLTLQTEE----------------------------   53 (556)
Q Consensus         3 ~~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~Lh~A~~~g~~~~~~~~----------------------------   53 (556)
                      ++||.|++.|+.|+|+.|++++.+ ....|..|+||||+|+..++.......                            
T Consensus        43 t~LH~A~~~g~~e~V~~ll~~~~~~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (682)
T PHA02876         43 TAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDEACI  122 (682)
T ss_pred             hHHHHHHHHHhhhHHHHHHHhCcccchhhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHHHHHHHH
Confidence            689999999999999999999776 346778899999999977654100000                            


Q ss_pred             -------------------------------cccccchHHHHHHHHhhCccccccccCCCChHHHHHHHhCcHHHHHHHH
Q 045083           54 -------------------------------GEISSESTEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLI  102 (556)
Q Consensus        54 -------------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll  102 (556)
                                                     ..-..+++++|    -..+.+++.+|..|.||||+||..|+.++|++|+
T Consensus       123 ~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~L----l~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL  198 (682)
T PHA02876        123 HILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEML----LEGGADVNAKDIYCITPIHYAAERGNAKMVNLLL  198 (682)
T ss_pred             HHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHH----HhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence                                           00012333444    3346778889999999999999999999999999


Q ss_pred             HHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcC----------------------------
Q 045083          103 VFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKAD----------------------------  154 (556)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~----------------------------  154 (556)
                      ++|++.                +..+.+|.||||.|+..|+.+++++|++.+                            
T Consensus       199 ~~Gad~----------------n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~  262 (682)
T PHA02876        199 SYGADV----------------NIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDA  262 (682)
T ss_pred             HCCCCc----------------CccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHC
Confidence            999874                334455555555555555555555544433                            


Q ss_pred             -CCCcccccCCCCcHHHHHHHcCCH-HHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcC-CHHHHHHHHhcCCCCC
Q 045083          155 -PHVSYSANRNSETLLYMAVANGSA-EIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLR-RVDVVKILIKADPHVP  231 (556)
Q Consensus       155 -~~~~~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~~~~~~  231 (556)
                       .+++ ..+..|.||||+|+..|+. +++++|++.+.+...      .+.+|.||||.|+..| ..++++.|+..+.+. 
T Consensus       263 g~~vn-~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~------~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadi-  334 (682)
T PHA02876        263 GFSVN-SIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNA------KNIKGETPLYLMAKNGYDTENIRTLIMLGADV-  334 (682)
T ss_pred             CCCCC-CCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCC------cCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCC-
Confidence             2332 3455677777777777664 466777766654322      5667777777777766 467777777777664 


Q ss_pred             ccCCCCCCCHHHHHHHc-CCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCC
Q 045083          232 YSANRNSETPLYMAVAN-GSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRN  310 (556)
Q Consensus       232 ~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~  310 (556)
                      +..|..|.||||+|+.. ++.++++.|++.+.+      ++.+|..|+||||+|+..|+.+++++|++.|++++ ..+..
T Consensus       335 n~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gad------in~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~-~~~~~  407 (682)
T PHA02876        335 NAADRLYITPLHQASTLDRNKDIVITLLELGAN------VNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIE-ALSQK  407 (682)
T ss_pred             CCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCC------CccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc-ccCCC
Confidence            56667777777777664 356667777766653      45566677777777777777777777777777764 55666


Q ss_pred             CCCHHHHHHHcCC-HHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcC-ChhHHHHHHHhh
Q 045083          311 SETPLYMAAANGS-VKIVAKILQKCPSPAHEGPDGKTALHAAVYTY-PTDILERVLIVR  367 (556)
Q Consensus       311 g~t~L~~A~~~~~-~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~-~~~~~~~~~~~~  367 (556)
                      |.||||+|+..++ ..+++.|++.|+++|.+|.+|+||||+|+..+ ..++++.++..+
T Consensus       408 g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~G  466 (682)
T PHA02876        408 IGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNG  466 (682)
T ss_pred             CCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCC
Confidence            7777777766554 34566777777777777777777777777654 456666665443

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.5e-41  Score=344.63  Aligned_cols=307  Identities=18%  Similarity=0.245  Sum_probs=264.6

Q ss_pred             CCHHHHHHHhcCCchHHHHhhhh-hcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCcccccccc
Q 045083            1 MDRKLYEAAAKGDIEPFREIARD-ELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQAN   79 (556)
Q Consensus         1 ~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   79 (556)
                      |+..|..|+..||++.++.|+++ +...+..+..|.||||.|+..|+.           +++++|++   . +..++..+
T Consensus         1 ~~~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~-----------~iv~~Ll~---~-Ga~~n~~~   65 (434)
T PHA02874          1 ASQDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDA-----------KIVELFIK---H-GADINHIN   65 (434)
T ss_pred             CcHHHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCH-----------HHHHHHHH---C-CCCCCCCC
Confidence            56789999999999999999986 455667778999999999999999           99999954   3 56677889


Q ss_pred             CCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcc
Q 045083           80 AKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSY  159 (556)
Q Consensus        80 ~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~  159 (556)
                      ..|.||||+|+..|+.+++++|+++|.+..                          ..+....+.++++.|++.|.+++ 
T Consensus        66 ~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~--------------------------~~~~~~~~~~~i~~ll~~g~d~n-  118 (434)
T PHA02874         66 TKIPHPLLTAIKIGAHDIIKLLIDNGVDTS--------------------------ILPIPCIEKDMIKTILDCGIDVN-  118 (434)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--------------------------cchhccCCHHHHHHHHHCcCCCC-
Confidence            999999999999999999999999876531                          11233457789999999999987 


Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCC
Q 045083          160 SANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSE  239 (556)
Q Consensus       160 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~  239 (556)
                      ..+..|.||||+|+..|+.+++++|++++++...      .+..|.||||.|+..|+.+++++|++++++. +..+..|.
T Consensus       119 ~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~------~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~-n~~~~~g~  191 (434)
T PHA02874        119 IKDAELKTFLHYAIKKGDLESIKMLFEYGADVNI------EDDNGCYPIHIAIKHNFFDIIKLLLEKGAYA-NVKDNNGE  191 (434)
T ss_pred             CCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCC------cCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCC
Confidence            6788999999999999999999999999876533      7889999999999999999999999999885 67889999


Q ss_pred             CHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHH
Q 045083          240 TPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAA  319 (556)
Q Consensus       240 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~  319 (556)
                      ||||+|+..|+.+++++|++.+++      ++.++..|.||||.|+..+. +.+++|+ .+.+++ .+|..|+||||+|+
T Consensus       192 tpL~~A~~~g~~~iv~~Ll~~g~~------i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in-~~d~~G~TpLh~A~  262 (434)
T PHA02874        192 SPLHNAAEYGDYACIKLLIDHGNH------IMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASIN-DQDIDGSTPLHHAI  262 (434)
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCC------CcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCC-CcCCCCCCHHHHHH
Confidence            999999999999999999999874      45677899999999999765 5677776 477765 77899999999999


Q ss_pred             HcC-CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcC-ChhHHHHHHH
Q 045083          320 ANG-SVKIVAKILQKCPSPAHEGPDGKTALHAAVYTY-PTDILERVLI  365 (556)
Q Consensus       320 ~~~-~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~-~~~~~~~~~~  365 (556)
                      ..+ +.+++++|+.+|++++.+|..|+||||+|++.+ ..+.++.++.
T Consensus       263 ~~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~  310 (434)
T PHA02874        263 NPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKYINKDPVIKDIIA  310 (434)
T ss_pred             hcCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHH
Confidence            876 789999999999999999999999999999876 4455555544

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.4e-41  Score=363.87  Aligned_cols=332  Identities=19%  Similarity=0.218  Sum_probs=283.7

Q ss_pred             HHHHHHHhcCCchHHHHhhhhhcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCCC
Q 045083            3 RKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKG   82 (556)
Q Consensus         3 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g   82 (556)
                      +.|+.|+..|+.++++.|++.|++++..|..|.||||+|+..|+.           +++++|++.    +..++..+.+|
T Consensus       147 ~~l~~~i~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~-----------~iv~~LL~~----Gad~n~~~~~g  211 (682)
T PHA02876        147 KLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNA-----------KMVNLLLSY----GADVNIIALDD  211 (682)
T ss_pred             HHHHHHHHCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCH-----------HHHHHHHHC----CCCcCccCCCC
Confidence            468889999999999999999999999999999999999999999           999999553    56677888999


Q ss_pred             ChHHHHHHHhCcHHHHHHHHHHhccCCchhh-------hhhhHHHHHH------HhhhccCCCcHhHHHHhcCCH-HHHH
Q 045083           83 DSPLHLAAKKGHTAIVEFLIVFANRQPIDLE-------RGVESAARQI------LKMTNEEQNTPLHEAVRLRSV-DVVK  148 (556)
Q Consensus        83 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~-------~~~~~~~~~~------l~~~~~~g~t~Lh~A~~~g~~-~~v~  148 (556)
                      .||||+|+..|+.+++++|++.+........       .+.......+      ++..|..|.||||+|+..|+. ++++
T Consensus       212 ~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~  291 (682)
T PHA02876        212 LSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVP  291 (682)
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHH
Confidence            9999999999999999999987655322100       0000001111      445677899999999999986 6999


Q ss_pred             HHHhcCCCCcccccCCCCcHHHHHHHcC-CHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhc-CCHHHHHHHHhc
Q 045083          149 ILIKADPHVSYSANRNSETLLYMAVANG-SAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRL-RRVDVVKILIKA  226 (556)
Q Consensus       149 ~Ll~~~~~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~  226 (556)
                      +|++.|.+++ ..|..|.||||+|+..| +.++++.|+..+.+...      .+..|.||||.|+.. ++.++++.|++.
T Consensus       292 lLl~~gadin-~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~------~d~~g~TpLh~A~~~~~~~~iv~lLl~~  364 (682)
T PHA02876        292 KLLERGADVN-AKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNA------ADRLYITPLHQASTLDRNKDIVITLLEL  364 (682)
T ss_pred             HHHHCCCCCC-CcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCC------cccCCCcHHHHHHHhCCcHHHHHHHHHc
Confidence            9999999987 77889999999999999 69999999999877543      788999999999985 578999999999


Q ss_pred             CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCC-HHHHHHHHhcCCCCCc
Q 045083          227 DPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRS-VDVAKILIEADPHVPY  305 (556)
Q Consensus       227 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~-~~~v~~Ll~~~~~~~~  305 (556)
                      +.+. +.+|..|.||||+|+..|+.++++.|++.+++      ++..+..|.||||+|+..++ ..+++.|++.|++++ 
T Consensus       365 gadi-n~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad------~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin-  436 (682)
T PHA02876        365 GANV-NARDYCDKTPIHYAAVRNNVVIINTLLDYGAD------IEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVN-  436 (682)
T ss_pred             CCCC-ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC------ccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCC-
Confidence            9985 78899999999999999999999999999975      46777899999999998765 567999999999986 


Q ss_pred             cccCCCCCHHHHHHHcC-CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHHHHHHh
Q 045083          306 SANRNSETPLYMAAANG-SVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIV  366 (556)
Q Consensus       306 ~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~~~~~  366 (556)
                      .+|..|+||||+|+..+ +.+++++|+++|++++.+|..|+||+++|+..+  ++++.++..
T Consensus       437 ~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~~--~~v~~Ll~~  496 (682)
T PHA02876        437 SKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEYH--GIVNILLHY  496 (682)
T ss_pred             cCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhC--CHHHHHHHC
Confidence            78999999999999977 689999999999999999999999999999754  345555443

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=9.1e-42  Score=335.85  Aligned_cols=324  Identities=24%  Similarity=0.323  Sum_probs=280.2

Q ss_pred             CHHHHHHHhcCCchHHHHhhhhhcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCC
Q 045083            2 DRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAK   81 (556)
Q Consensus         2 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   81 (556)
                      |.++|.|+..+.+      +++-......|..+++|||+|+.....           +.++.+++.    +.+.+..|.+
T Consensus        62 d~~~~~~~~~~y~------~~~~~~~~a~D~~~n~~l~~a~~~~~~-----------~~i~~Lls~----gad~~~~n~~  120 (929)
T KOG0510|consen   62 DTELHHASARNYI------LSKLAISYAKDSADNTPLHAAVEYNQG-----------DKIQVLLSY----GADTPLRNLN  120 (929)
T ss_pred             hhHHHHHHhhcch------hhhhhhhhhhhcccCchhHHHhhcchH-----------HHHHHHHhc----CCCCChhhhh
Confidence            3455555555544      333344456778899999999999999           999999664    7778889999


Q ss_pred             CChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccc
Q 045083           82 GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSA  161 (556)
Q Consensus        82 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  161 (556)
                      +.+|+|+|+..|+.+.++.|++++.+                ++..|+.|.||||.|+..++.|..+.|++.|+++. ..
T Consensus       121 ~~aplh~A~~~~~~s~L~~Ll~~~~d----------------vnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~-K~  183 (929)
T KOG0510|consen  121 KNAPLHLAADSGNYSCLKLLLDYGAD----------------VNLEDENGFTPLHLAARKNKVEAKKELINKGADPC-KS  183 (929)
T ss_pred             ccCchhhccccchHHHHHHHHHhcCC----------------ccccccCCCchhhHHHhcChHHHHHHHHhcCCCCC-cc
Confidence            99999999999999999999999977                56789999999999999999998899999999987 88


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCC----------
Q 045083          162 NRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVP----------  231 (556)
Q Consensus       162 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~----------  231 (556)
                      |..|..|+|.|+.+|..|+.+.++.+.+... ...++..+..+.+|||.|+..|+.++++.+++.+....          
T Consensus       184 ~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r-~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~  262 (929)
T KOG0510|consen  184 DIDGNFPIHEAARSGSKECMEIFLPEHGYER-QTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQE  262 (929)
T ss_pred             cCcCCchHHHHHHhcchhhhhhhhccccchh-hcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHH
Confidence            9999999999999999999999998443222 22355678999999999999999999999999776542          


Q ss_pred             ----ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHh-cCCCCCcc
Q 045083          232 ----YSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE-ADPHVPYS  306 (556)
Q Consensus       232 ----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~~~~~~~~  306 (556)
                          +..|++|.||||+|++.|+.+.++.|+..|.+      ++.++.++.||||.|+.+|+.+.|+.|++ .+.-+.+.
T Consensus       263 kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~------I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne  336 (929)
T KOG0510|consen  263 KELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGAS------INSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNE  336 (929)
T ss_pred             HHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCc------ccccCCCCCCchHHHHHcccHHHHHHHHhCcCcccccc
Confidence                45689999999999999999999999999984      67888999999999999999999999999 66666667


Q ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC---CCCCCCCcHHHHHHhcCChhHHHHHHHhhCCC
Q 045083          307 ANRNSETPLYMAAANGSVKIVAKILQKCPSPA---HEGPDGKTALHAAVYTYPTDILERVLIVRGTF  370 (556)
Q Consensus       307 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~---~~d~~g~t~L~~A~~~~~~~~~~~~~~~~~~~  370 (556)
                      .|..|.||||+|+++|+.++++.||.+|+...   ..|.+|+||||+|++.|+...+++++.++...
T Consensus       337 ~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I  403 (929)
T KOG0510|consen  337 SDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADI  403 (929)
T ss_pred             ccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCce
Confidence            78899999999999999999999999999865   56999999999999999999998887766544

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=6.5e-41  Score=345.40  Aligned_cols=314  Identities=15%  Similarity=0.132  Sum_probs=217.8

Q ss_pred             hcCCchHHHHhhhhh-cccccc-cCCCCeeEEeeec--cccccccccccccccchHHHHHHHHhhCccccccccCCCChH
Q 045083           10 AKGDIEPFREIARDE-LESIVT-DVMKNTVLHVNIM--RSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKGDSP   85 (556)
Q Consensus        10 ~~g~~~~v~~Ll~~g-~~~~~~-d~~g~t~Lh~A~~--~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tp   85 (556)
                      +.++.+++++|+++| ++++.. |..|.||||.|+.  +++.           +++++|++   . +.+++..|..|.||
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~-----------eIVklLLe---~-GADVN~kD~~G~TP  215 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDI-----------DILEWLCN---N-GVNVNLQNNHLITP  215 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCH-----------HHHHHHHH---c-CCCCCCCCCCCCCH
Confidence            569999999999999 999987 8899999998764  4567           89999954   3 67788999999999


Q ss_pred             HHHHHHhCc--HHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHH---hcCCHHHHHHHHhcCCCCccc
Q 045083           86 LHLAAKKGH--TAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAV---RLRSVDVVKILIKADPHVSYS  160 (556)
Q Consensus        86 Lh~A~~~g~--~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~---~~g~~~~v~~Ll~~~~~~~~~  160 (556)
                      ||+|+..|+  .++|++|+++|++                ++.+|..|.||||.|+   .+++.++++.|++.+....  
T Consensus       216 LH~Aa~~g~~~~eIVklLLe~GAD----------------VN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~--  277 (764)
T PHA02716        216 LHTYLITGNVCASVIKKIIELGGD----------------MDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNK--  277 (764)
T ss_pred             HHHHHHcCCCCHHHHHHHHHcCCC----------------CCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccc--
Confidence            999999995  5999999999998                4567888999999764   3456666666665422111  


Q ss_pred             ccCCCCcHHH---HHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHh--cCCHHHHHHHHhcCCCCCccCC
Q 045083          161 ANRNSETLLY---MAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVR--LRRVDVVKILIKADPHVPYSAN  235 (556)
Q Consensus       161 ~~~~g~t~L~---~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~--~~~~~~v~~Ll~~~~~~~~~~~  235 (556)
                       ......+++   .|+..|+.+++++|++++++..      .+|..|+||||.|+.  .++.+++++|++.|+++ +.+|
T Consensus       278 -~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN------~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADI-N~kD  349 (764)
T PHA02716        278 -VKNIPMILHSYITLARNIDISVVYSFLQPGVKLH------YKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDL-NEPD  349 (764)
T ss_pred             -cccchhhhHHHHHHHHcCCHHHHHHHHhCCCcee------ccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCC-ccCC
Confidence             001112222   2555666666666666655432      245666666665543  34556666666666653 5556


Q ss_pred             CCCCCHHHHHHH--------------cCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHH----HHhcCCHHHHHHHH
Q 045083          236 RNSETPLYMAVA--------------NGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHE----AVRLRSVDVAKILI  297 (556)
Q Consensus       236 ~~g~t~L~~A~~--------------~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~----A~~~g~~~~v~~Ll  297 (556)
                      ..|+||||+|+.              .++.++++.|+++|++      ++.+|..|+||||.    |...++.+++++|+
T Consensus       350 ~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GAD------In~kn~~G~TPLh~y~~~a~n~~~~dIvklLi  423 (764)
T PHA02716        350 NIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGAD------ITAVNCLGYTPLTSYICTAQNYMYYDIIDCLI  423 (764)
T ss_pred             CCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCC------CCCcCCCCCChHHHHHHHHHhcChHHHHHHHH
Confidence            666666666543              2456666666666653      34555666666662    12234556666655


Q ss_pred             hcCC-------------------------------------------------------------CCCccccCCCCCHHH
Q 045083          298 EADP-------------------------------------------------------------HVPYSANRNSETPLY  316 (556)
Q Consensus       298 ~~~~-------------------------------------------------------------~~~~~~~~~g~t~L~  316 (556)
                      +.+.                                                             +. +..|..|+||||
T Consensus       424 s~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nv-N~~D~~G~TPLh  502 (764)
T PHA02716        424 SDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNN-AVCETSGMTPLH  502 (764)
T ss_pred             hCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccc-cccCCCCCCHHH
Confidence            5331                                                             11 244778999999


Q ss_pred             HHHHcCCH-----HHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCCh-----hHHHHHHHhhCCCC
Q 045083          317 MAAANGSV-----KIVAKILQKCPSPAHEGPDGKTALHAAVYTYPT-----DILERVLIVRGTFK  371 (556)
Q Consensus       317 ~A~~~~~~-----~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~-----~~~~~~~~~~~~~~  371 (556)
                      +|+..|+.     +++++|++.|+++|.+|++|+||||+|++.+..     ++++.++..+....
T Consensus       503 ~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~~~  567 (764)
T PHA02716        503 VSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPNVD  567 (764)
T ss_pred             HHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCCcc
Confidence            99999876     456999999999999999999999999998865     78888877554433

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.1e-40  Score=334.98  Aligned_cols=308  Identities=16%  Similarity=0.218  Sum_probs=258.5

Q ss_pred             HHHHHHhcCCchHHHHhhhhhcccccccCCCCeeEEeeec--cccccccccccccccchHHHHHHHHhhCccccccccCC
Q 045083            4 KLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIM--RSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAK   81 (556)
Q Consensus         4 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~--~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   81 (556)
                      +++.++..++.+.++.+++....     ..+.++||.++.  .++.           ++++.|++   . +..++.+|.+
T Consensus        12 sl~~~~~~~n~~~~~~~l~~~~~-----~g~~~~Lh~~~~~~~~~~-----------~iv~~Ll~---~-Gadvn~~d~~   71 (446)
T PHA02946         12 SLYAKYNSKNLDVFRNMLQAIEP-----SGNYHILHAYCGIKGLDE-----------RFVEELLH---R-GYSPNETDDD   71 (446)
T ss_pred             HHHHHHccCcHHHHHHHHhccCC-----CCCChHHHHHHHhcCCCH-----------HHHHHHHH---C-cCCCCccCCC
Confidence            46888899999999999875211     234689998764  3455           78888844   3 5678899999


Q ss_pred             CChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcC--CHHHHHHHHhcCCCCcc
Q 045083           82 GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLR--SVDVVKILIKADPHVSY  159 (556)
Q Consensus        82 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~  159 (556)
                      |.||||+|+..|+.++|++|+++|++                ++.+|.+|.||||+|+..+  ..+++++|+++|++++.
T Consensus        72 G~TpLh~Aa~~g~~eiv~lLL~~GAd----------------in~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~  135 (446)
T PHA02946         72 GNYPLHIASKINNNRIVAMLLTHGAD----------------PNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINN  135 (446)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCcCC----------------CCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCccc
Confidence            99999999999999999999999987                5668999999999998866  48999999999999986


Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcC--CHHHHHHHHhcCCCCCccCCCC
Q 045083          160 SANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLR--RVDVVKILIKADPHVPYSANRN  237 (556)
Q Consensus       160 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~~  237 (556)
                      ..+..|.|||| |+..|+.+++++|++.+.+...      .+..|.||||.|+..+  +.+++++|++.+.++ +.+|.+
T Consensus       136 ~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~------~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadi-n~~d~~  207 (446)
T PHA02946        136 SVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARI------VDKFGKNHIHRHLMSDNPKASTISWMMKLGISP-SKPDHD  207 (446)
T ss_pred             ccCCCCCcHHH-HHHCCChHHHHHHHhccccccc------cCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCC-cccCCC
Confidence            67899999997 6677999999999999866433      7899999999998755  468999999999995 788999


Q ss_pred             CCCHHHHHHHcC--CHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCC-HHHHHHHHhcCCCCCc---------
Q 045083          238 SETPLYMAVANG--SAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRS-VDVAKILIEADPHVPY---------  305 (556)
Q Consensus       238 g~t~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~-~~~v~~Ll~~~~~~~~---------  305 (556)
                      |.||||+|+..|  +.++++.|++ +.      .++.+|..|.||||+|++.++ .++++.|+++|.....         
T Consensus       208 G~TpLH~Aa~~~~~~~~iv~lLl~-ga------din~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~  280 (446)
T PHA02946        208 GNTPLHIVCSKTVKNVDIINLLLP-ST------DVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFY  280 (446)
T ss_pred             CCCHHHHHHHcCCCcHHHHHHHHc-CC------CCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHc
Confidence            999999999986  7899999985 54      367889999999999999988 5899999998865311         


Q ss_pred             ----------cc-cCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHHHHHHhhCC
Q 045083          306 ----------SA-NRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRGT  369 (556)
Q Consensus       306 ----------~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~~~~~~~~  369 (556)
                                .. +..|+||||+|+++|+.+++++|++++.       +|+||||+|+..++.++++.++.++..
T Consensus       281 ~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~-------~~~t~L~~A~~~~~~~~v~~Ll~~ga~  348 (446)
T PHA02946        281 DRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDI-------ICEDAMYYAVLSEYETMVDYLLFNHFS  348 (446)
T ss_pred             CchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCC-------ccccHHHHHHHhCHHHHHHHHHHCCCC
Confidence                      11 2357799999999999999999998763       679999999999999999988866543

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1e-40  Score=344.18  Aligned_cols=290  Identities=19%  Similarity=0.254  Sum_probs=246.0

Q ss_pred             HHHHhcCCchHHHHhhhhhcccccccCCCCeeEEeeeccc---cccccccccccccchHHHHHHHHhhCccccccccCCC
Q 045083            6 YEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRS---HLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKG   82 (556)
Q Consensus         6 ~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g   82 (556)
                      +.|+..++++++++|++.|++++..+..|.||||+|+..|   +.           ++++.|++   . +.+++.++..|
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~-----------~iv~~Ll~---~-Gadin~~~~~g   83 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVK-----------DIVRLLLE---A-GADVNAPERCG   83 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCcccCCCCCCCHHHHHHHhcCCChH-----------HHHHHHHH---C-CCCCCCCCCCC
Confidence            4568889999999999999999998899999999999988   77           88888844   3 66778888899


Q ss_pred             ChHHHHHHHhC-cHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHH--hcCCHHHHHHHHhcCCCCcc
Q 045083           83 DSPLHLAAKKG-HTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAV--RLRSVDVVKILIKADPHVSY  159 (556)
Q Consensus        83 ~tpLh~A~~~g-~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~--~~g~~~~v~~Ll~~~~~~~~  159 (556)
                      .||||+|+..| +.+++++|+++|++                ++.+|..|.||||+|+  ..++.+++++|++.|++++ 
T Consensus        84 ~TpLh~A~~~~~~~~iv~lLl~~ga~----------------in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~-  146 (471)
T PHA03095         84 FTPLHLYLYNATTLDVIKLLIKAGAD----------------VNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVN-  146 (471)
T ss_pred             CCHHHHHHHcCCcHHHHHHHHHcCCC----------------CCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCC-
Confidence            99999999999 59999999999887                5667888999999999  5568899999999999887 


Q ss_pred             cccCCCCcHHHHHHHcC--CHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhc--CCHHHHHHHHhcCCCCCccCC
Q 045083          160 SANRNSETLLYMAVANG--SAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRL--RRVDVVKILIKADPHVPYSAN  235 (556)
Q Consensus       160 ~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~~~~~~~~~~  235 (556)
                      ..|..|.||||+|+..+  +.+++++|++++.+...      .+..|.||||.++..  ++.++++.|++.+.+ ++.+|
T Consensus       147 ~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~------~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~-~~~~d  219 (471)
T PHA03095        147 ALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYA------VDDRFRSLLHHHLQSFKPRARIVRELIRAGCD-PAATD  219 (471)
T ss_pred             ccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcc------cCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCC-CcccC
Confidence            77888999999888766  67899999998876543      578899999998864  678899999999888 47889


Q ss_pred             CCCCCHHHHHHHcCCH--HHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCC
Q 045083          236 RNSETPLYMAVANGSA--EIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSET  313 (556)
Q Consensus       236 ~~g~t~L~~A~~~g~~--~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t  313 (556)
                      ..|.||||+|+..|+.  .+++.|++.+.+      ++.+|..|+||||+|+..|+.+++++|++.|++++ .+|.+|+|
T Consensus       220 ~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~d------in~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n-~~~~~g~t  292 (471)
T PHA03095        220 MLGNTPLHSMATGSSCKRSLVLPLLIAGIS------INARNRYGQTPLHYAAVFNNPRACRRLIALGADIN-AVSSDGNT  292 (471)
T ss_pred             CCCCCHHHHHHhcCCchHHHHHHHHHcCCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCC
Confidence            9999999999988874  578888888763      57788889999999999999999999999998876 77889999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCC
Q 045083          314 PLYMAAANGSVKIVAKILQKCPSPAHEG  341 (556)
Q Consensus       314 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~d  341 (556)
                      |||+|+.+|+.++++.|+.++++++..+
T Consensus       293 pl~~A~~~~~~~~v~~LL~~~~~~~~~~  320 (471)
T PHA03095        293 PLSLMVRNNNGRAVRAALAKNPSAETVA  320 (471)
T ss_pred             HHHHHHHhCCHHHHHHHHHhCCCHHHHH
Confidence            9999999999999999998888765443

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.9e-38  Score=327.25  Aligned_cols=283  Identities=22%  Similarity=0.249  Sum_probs=253.0

Q ss_pred             eeeccccccccccccccccchHHHHHHHHhhCccccccccCCCChHHHHHHHhC---cHHHHHHHHHHhccCCchhhhhh
Q 045083           40 VNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKGDSPLHLAAKKG---HTAIVEFLIVFANRQPIDLERGV  116 (556)
Q Consensus        40 ~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpLh~A~~~g---~~~iv~~Ll~~~~~~~~~~~~~~  116 (556)
                      .++..++.           +++++|++   . +..++..+..|.||||+|+..|   +.+++++|++.|++         
T Consensus        20 ~~~~~~~~-----------~~v~~Ll~---~-ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gad---------   75 (471)
T PHA03095         20 LNASNVTV-----------EEVRRLLA---A-GADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGAD---------   75 (471)
T ss_pred             HcCCCCCH-----------HHHHHHHH---c-CCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCC---------
Confidence            45566666           88999844   3 6678889999999999999999   99999999999988         


Q ss_pred             hHHHHHHHhhhccCCCcHhHHHHhcC-CHHHHHHHHhcCCCCcccccCCCCcHHHHHH--HcCCHHHHHHHHHhCCChhH
Q 045083          117 ESAARQILKMTNEEQNTPLHEAVRLR-SVDVVKILIKADPHVSYSANRNSETLLYMAV--ANGSAEIVAEILQNCPQSAA  193 (556)
Q Consensus       117 ~~~~~~~l~~~~~~g~t~Lh~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~~~~~~~  193 (556)
                             ++.++..|.||||+|+..| +.+++++|++.|++++ ..+..|.||||+|+  ..++.+++++|++.+++...
T Consensus        76 -------in~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in-~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~  147 (471)
T PHA03095         76 -------VNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVN-AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNA  147 (471)
T ss_pred             -------CCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCC-CCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCc
Confidence                   5667889999999999999 5999999999999987 78889999999999  56789999999999977543


Q ss_pred             HHHhhhcCCCCCcHhHHHHhcC--CHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc--CCHHHHHHHHHcCChhHHHHH
Q 045083          194 RQMLEKTNEEQNTPLHEAVRLR--RVDVVKILIKADPHVPYSANRNSETPLYMAVAN--GSAEIVAEILQNCPESAARQM  269 (556)
Q Consensus       194 ~~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~~~~~~~~~~  269 (556)
                            .+..|.||||.|+..+  +.+++++|++++++.. ..|..|.||||+|+..  ++.++++.|++.+.+      
T Consensus       148 ------~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~-~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~------  214 (471)
T PHA03095        148 ------LDLYGMTPLAVLLKSRNANVELLRLLIDAGADVY-AVDDRFRSLLHHHLQSFKPRARIVRELIRAGCD------  214 (471)
T ss_pred             ------cCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCC------
Confidence                  7899999999998866  6899999999999964 4599999999999875  788999999999985      


Q ss_pred             hhhcCCCCCchhHHHHhcCCH--HHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcH
Q 045083          270 LEKTNEEQNTPLHEAVRLRSV--DVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTA  347 (556)
Q Consensus       270 ~~~~~~~g~t~Lh~A~~~g~~--~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~  347 (556)
                      .+.+|..|+||||+|+..|+.  .+++.|++.|.+++ .+|..|+||||+|+..|+.+++++|++.|++++.+|.+|+||
T Consensus       215 ~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din-~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tp  293 (471)
T PHA03095        215 PAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISIN-ARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTP  293 (471)
T ss_pred             CcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH
Confidence            467889999999999999975  68999999999986 778999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChhHHHHHHHhhC
Q 045083          348 LHAAVYTYPTDILERVLIVRG  368 (556)
Q Consensus       348 L~~A~~~~~~~~~~~~~~~~~  368 (556)
                      ||+|+..++.++++.++..+.
T Consensus       294 l~~A~~~~~~~~v~~LL~~~~  314 (471)
T PHA03095        294 LSLMVRNNNGRAVRAALAKNP  314 (471)
T ss_pred             HHHHHHhCCHHHHHHHHHhCC
Confidence            999999999999988876554

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=2.3e-38  Score=326.50  Aligned_cols=319  Identities=17%  Similarity=0.148  Sum_probs=252.2

Q ss_pred             HHHHHHHh--cCCchHHHHhhhhhcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccC
Q 045083            3 RKLYEAAA--KGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANA   80 (556)
Q Consensus         3 ~~L~~A~~--~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   80 (556)
                      ++||.|+.  .++.+++++|+++|++++..|..|.||||+|+..|+..         .++++.|++.    +.+++.+|.
T Consensus       179 TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~---------~eIVklLLe~----GADVN~kD~  245 (764)
T PHA02716        179 GILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVC---------ASVIKKIIEL----GGDMDMKCV  245 (764)
T ss_pred             cHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCC---------HHHHHHHHHc----CCCCCCCCC
Confidence            58998864  46889999999999999999999999999999999531         1789999543    677889999


Q ss_pred             CCChHHHHHH---HhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhH---HHHhcCCHHHHHHHHhcC
Q 045083           81 KGDSPLHLAA---KKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLH---EAVRLRSVDVVKILIKAD  154 (556)
Q Consensus        81 ~g~tpLh~A~---~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh---~A~~~g~~~~v~~Ll~~~  154 (556)
                      .|.||||+|+   .+++.++++.|++.+....                  .....++||   .|++.|+.+++++|++.|
T Consensus       246 ~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~------------------~~~~~~~L~~~i~AA~~g~leiVklLLe~G  307 (764)
T PHA02716        246 NGMSPIMTYIINIDNINPEITNIYIESLDGNK------------------VKNIPMILHSYITLARNIDISVVYSFLQPG  307 (764)
T ss_pred             CCCCHHHHHHHhhhccCHHHHHHHHHhccccc------------------cccchhhhHHHHHHHHcCCHHHHHHHHhCC
Confidence            9999999985   5689999999987643211                  011122343   478889999999999999


Q ss_pred             CCCcccccCCCCcHHHHHHH--cCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHh--------------cCCHH
Q 045083          155 PHVSYSANRNSETLLYMAVA--NGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVR--------------LRRVD  218 (556)
Q Consensus       155 ~~~~~~~~~~g~t~L~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~--------------~~~~~  218 (556)
                      ++++ ..|..|+||||+|+.  .++.+++++|++++.+..      .+|..|.||||.|+.              .++.+
T Consensus       308 AdIN-~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN------~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~e  380 (764)
T PHA02716        308 VKLH-YKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLN------EPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLD  380 (764)
T ss_pred             Ccee-ccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCc------cCCCCCCCHHHHHHHhhhhhccccccccccChHH
Confidence            9887 778899999998764  467899999999887643      378899999998865              36789


Q ss_pred             HHHHHHhcCCCCCccCCCCCCCHHHH----HHHcCCHHHHHHHHHcCChhH-----------------------------
Q 045083          219 VVKILIKADPHVPYSANRNSETPLYM----AVANGSAEIVAEILQNCPESA-----------------------------  265 (556)
Q Consensus       219 ~v~~Ll~~~~~~~~~~~~~g~t~L~~----A~~~g~~~~v~~Ll~~~~~~~-----------------------------  265 (556)
                      ++++|+++|+++ +.+|..|+||||.    |...++.+++++|++.+....                             
T Consensus       381 VVklLL~~GADI-n~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~  459 (764)
T PHA02716        381 VIQCLISLGADI-TAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNI  459 (764)
T ss_pred             HHHHHHHCCCCC-CCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCc
Confidence            999999999885 7889999999983    233567889988887542100                             


Q ss_pred             --------------------------HHHHhhhcCCCCCchhHHHHhcCCH-----HHHHHHHhcCCCCCccccCCCCCH
Q 045083          266 --------------------------ARQMLEKTNEEQNTPLHEAVRLRSV-----DVAKILIEADPHVPYSANRNSETP  314 (556)
Q Consensus       266 --------------------------~~~~~~~~~~~g~t~Lh~A~~~g~~-----~~v~~Ll~~~~~~~~~~~~~g~t~  314 (556)
                                                .....+..|..|+||||+|+..|+.     +++++|++.|++++ .+|.+|+||
T Consensus       460 ~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN-~~d~~G~TP  538 (764)
T PHA02716        460 PTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNIN-IPTKNGVTP  538 (764)
T ss_pred             chhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCc-ccCCCCCCH
Confidence                                      0001134577899999999999876     55699999999987 789999999


Q ss_pred             HHHHHHcCCH-----HHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHHHHHHhh
Q 045083          315 LYMAAANGSV-----KIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVR  367 (556)
Q Consensus       315 L~~A~~~~~~-----~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~~~~~~  367 (556)
                      ||+|+++|+.     ++|+.||++|++++..      .+++|....+.+++..+....
T Consensus       539 Lh~A~~~g~~~~~~~eIvk~LL~~ga~~~~~------~l~~~~~~~~~~~~~ll~~~~  590 (764)
T PHA02716        539 LMLTMRNNRLSGHQWYIVKNILDKRPNVDIV------IIFLDKCYANGKFPSLLLSED  590 (764)
T ss_pred             HHHHHHcCCccccHHHHHHHHHhcCCCcchH------HHHHHhhhhhhHHHHHHHHcc
Confidence            9999999976     9999999999998875      488888777777776655443

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.4e-38  Score=327.17  Aligned_cols=278  Identities=21%  Similarity=0.280  Sum_probs=150.2

Q ss_pred             hHHHHhhhhhcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCCCChHHHH-----H
Q 045083           15 EPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKGDSPLHL-----A   89 (556)
Q Consensus        15 ~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpLh~-----A   89 (556)
                      +.++++++.+...+..+..+.||||.|+..|+.           ++++.|++   . +..++..+..|.||||+     |
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~-----------~ivk~Ll~---~-g~~~~~~~~~~~t~L~~~~~~~a   80 (480)
T PHA03100         16 KNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNI-----------DVVKILLD---N-GADINSSTKNNSTPLHYLSNIKY   80 (480)
T ss_pred             HHHHHHHhcCccchhhhcccchhhhhhhccCCH-----------HHHHHHHH---c-CCCCCCccccCcCHHHHHHHHHH
Confidence            445555554444444445555555555555555           55555532   2 33344455555555555     5


Q ss_pred             HHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHH--hcCCHHHHHHHHhcCCCCcccccCCCCc
Q 045083           90 AKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAV--RLRSVDVVKILIKADPHVSYSANRNSET  167 (556)
Q Consensus        90 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~g~t  167 (556)
                      +..|+.+++++|++.|++                ++..|..|.||||+|+  ..|+.+++++|++.|+++. ..+..|.|
T Consensus        81 ~~~~~~~iv~~Ll~~ga~----------------i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~-~~~~~g~t  143 (480)
T PHA03100         81 NLTDVKEIVKLLLEYGAN----------------VNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVN-IKNSDGEN  143 (480)
T ss_pred             HhhchHHHHHHHHHCCCC----------------CCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCC-ccCCCCCc
Confidence            555555555555555554                2334555555555555  5555555555555555554 44555555


Q ss_pred             HHHHHHHcC--CHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCC------C
Q 045083          168 LLYMAVANG--SAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNS------E  239 (556)
Q Consensus       168 ~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g------~  239 (556)
                      |||+|+..|  +.+++++|++++++...      .+..|.||||.|+..|+.+++++|++.+++. +..+..|      .
T Consensus       144 ~L~~A~~~~~~~~~iv~~Ll~~g~din~------~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~~  216 (480)
T PHA03100        144 LLHLYLESNKIDLKILKLLIDKGVDINA------KNRYGYTPLHIAVEKGNIDVIKFLLDNGADI-NAGDIETLLFTIFE  216 (480)
T ss_pred             HHHHHHHcCCChHHHHHHHHHCCCCccc------ccCCCCCHHHHHHHhCCHHHHHHHHHcCCCc-cCCCCCCCcHHHHH
Confidence            555555555  55555555555544322      3445555555555555555555555555553 3444444      5


Q ss_pred             CHHHHHHHcCC--HHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHH
Q 045083          240 TPLYMAVANGS--AEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYM  317 (556)
Q Consensus       240 t~L~~A~~~g~--~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~  317 (556)
                      ||||.|+..|+  .+++++|++.|.+      ++.+|..|.||||+|+..|+.+++++|++.|++++ .+|..|.||+|+
T Consensus       217 t~l~~a~~~~~~~~~iv~~Ll~~g~d------in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n-~~d~~g~tpl~~  289 (480)
T PHA03100        217 TPLHIAACYNEITLEVVNYLLSYGVP------INIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPN-LVNKYGDTPLHI  289 (480)
T ss_pred             hHHHHHHHhCcCcHHHHHHHHHcCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCcHHHH
Confidence            55555555555  5555555555542      34445555555555555555555555555555443 445555555555


Q ss_pred             HHHcCCHHHHHHHHhcCCCCC
Q 045083          318 AAANGSVKIVAKILQKCPSPA  338 (556)
Q Consensus       318 A~~~~~~~~v~~Ll~~~~~~~  338 (556)
                      |+++++.+++++|+++|++++
T Consensus       290 A~~~~~~~iv~~Ll~~g~~i~  310 (480)
T PHA03100        290 AILNNNKEIFKLLLNNGPSIK  310 (480)
T ss_pred             HHHhCCHHHHHHHHhcCCCHH
Confidence            555555555555555555443

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.6e-38  Score=323.40  Aligned_cols=276  Identities=23%  Similarity=0.322  Sum_probs=249.5

Q ss_pred             chHHHHHHHHhhCccccccccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHH-
Q 045083           59 ESTEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE-  137 (556)
Q Consensus        59 ~~~~~l~~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~-  137 (556)
                      ++++.+   + ..+...+..+..+.||||+|+..|+.++|++|+++|++                ++..+..|.||||+ 
T Consensus        16 ~~~~~~---~-~~~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~----------------~~~~~~~~~t~L~~~   75 (480)
T PHA03100         16 KNIKYI---I-MEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGAD----------------INSSTKNNSTPLHYL   75 (480)
T ss_pred             HHHHHH---H-hcCccchhhhcccchhhhhhhccCCHHHHHHHHHcCCC----------------CCCccccCcCHHHHH
Confidence            444555   3 33566677888999999999999999999999999987                45567889999999 


Q ss_pred             ----HHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHH--HcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHH
Q 045083          138 ----AVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAV--ANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEA  211 (556)
Q Consensus       138 ----A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A  211 (556)
                          |+..|+.+++++|++.|++++ ..+..|.||||+|+  ..|+.+++++|++++.+...      .+..|.||||.|
T Consensus        76 ~~~~a~~~~~~~iv~~Ll~~ga~i~-~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~------~~~~g~t~L~~A  148 (480)
T PHA03100         76 SNIKYNLTDVKEIVKLLLEYGANVN-APDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNI------KNSDGENLLHLY  148 (480)
T ss_pred             HHHHHHhhchHHHHHHHHHCCCCCC-CCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCc------cCCCCCcHHHHH
Confidence                999999999999999999995 88999999999999  99999999999999876433      788999999999


Q ss_pred             HhcC--CHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCC------CchhHH
Q 045083          212 VRLR--RVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQ------NTPLHE  283 (556)
Q Consensus       212 ~~~~--~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g------~t~Lh~  283 (556)
                      +..+  +.+++++|+++++++ +..+..|.||||+|+..|+.+++++|++.+++      .+..+..|      .||||.
T Consensus       149 ~~~~~~~~~iv~~Ll~~g~di-n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~------~~~~~~~~~~~~~~~t~l~~  221 (480)
T PHA03100        149 LESNKIDLKILKLLIDKGVDI-NAKNRYGYTPLHIAVEKGNIDVIKFLLDNGAD------INAGDIETLLFTIFETPLHI  221 (480)
T ss_pred             HHcCCChHHHHHHHHHCCCCc-ccccCCCCCHHHHHHHhCCHHHHHHHHHcCCC------ccCCCCCCCcHHHHHhHHHH
Confidence            9999  999999999999985 67788999999999999999999999999975      34566677      899999


Q ss_pred             HHhcCC--HHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHH
Q 045083          284 AVRLRS--VDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE  361 (556)
Q Consensus       284 A~~~g~--~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~  361 (556)
                      |+..|+  .+++++|++.|.+++ .+|..|.||||+|+.+|+.+++++|++.|++++.+|..|+||+|+|+..+..++++
T Consensus       222 a~~~~~~~~~iv~~Ll~~g~din-~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~  300 (480)
T PHA03100        222 AACYNEITLEVVNYLLSYGVPIN-IKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFK  300 (480)
T ss_pred             HHHhCcCcHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHH
Confidence            999999  999999999999986 77899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCC
Q 045083          362 RVLIVRGT  369 (556)
Q Consensus       362 ~~~~~~~~  369 (556)
                      .++..+..
T Consensus       301 ~Ll~~g~~  308 (480)
T PHA03100        301 LLLNNGPS  308 (480)
T ss_pred             HHHhcCCC
Confidence            88876653

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.7e-37  Score=323.21  Aligned_cols=344  Identities=15%  Similarity=0.112  Sum_probs=220.5

Q ss_pred             HHHHHHHhc---CCchHHHHhhhhhcccccccCCCCeeEEeeecccccccc-------ccc-cc----------------
Q 045083            3 RKLYEAAAK---GDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQ-------TEE-GE----------------   55 (556)
Q Consensus         3 ~~L~~A~~~---g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g~~~~~-------~~~-~~----------------   55 (556)
                      ++||+|++.   |+.++++.|++.|++++..+..|.||||.|+..|+.+..       .+. +.                
T Consensus        34 t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~  113 (661)
T PHA02917         34 NALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKN  113 (661)
T ss_pred             cHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhc
Confidence            689997665   889999999999999999999999999999999986321       010 00                


Q ss_pred             cccchHHHHHHHHhhCccccccccCCCChHHHHHH--HhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCC--
Q 045083           56 ISSESTEFVEQILDLCPSLLFQANAKGDSPLHLAA--KKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQ--  131 (556)
Q Consensus        56 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpLh~A~--~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g--  131 (556)
                      ...+++++|++    .+.+++..|.+|+||||.|+  .+|+.++|++|+++|++.+.             -+..+..|  
T Consensus       114 ~~~e~vk~Ll~----~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~-------------~d~~~~~g~~  176 (661)
T PHA02917        114 VDVDLIKVLVE----HGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLY-------------EDEDDEYGYA  176 (661)
T ss_pred             CCHHHHHHHHH----cCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccc-------------cccccccccc
Confidence            01244444422    25556666666667766432  35666777777666665211             01112223  


Q ss_pred             ---------CcHhHHHHh-----------cCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCH--HHHHHHHHhCC
Q 045083          132 ---------NTPLHEAVR-----------LRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSA--EIVAEILQNCP  189 (556)
Q Consensus       132 ---------~t~Lh~A~~-----------~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~--~~v~~Ll~~~~  189 (556)
                               .||||+|+.           .++.+++++|+++|++++ ..|..|.||||+|+.+|+.  |+|++|++ +.
T Consensus       177 ~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn-~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~  254 (661)
T PHA02917        177 YDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPS-SIDKNYCTALQYYIKSSHIDIDIVKLLMK-GI  254 (661)
T ss_pred             cccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcc-cCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CC
Confidence                     377777664           346677777777777665 5566677777777776663  56776654 33


Q ss_pred             ChhHHHHhhhcCCCCCcHhHHHHh-------cC--CHHHHHHHHhcCCCCCc------cCCC------------CCCCHH
Q 045083          190 QSAARQMLEKTNEEQNTPLHEAVR-------LR--RVDVVKILIKADPHVPY------SANR------------NSETPL  242 (556)
Q Consensus       190 ~~~~~~~~~~~~~~g~t~L~~A~~-------~~--~~~~v~~Ll~~~~~~~~------~~~~------------~g~t~L  242 (556)
                      +....  ....+..|.+|+|.|+.       .+  +.++++.|++.|.+.+.      ..+.            .+.+++
T Consensus       255 d~~~~--~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (661)
T PHA02917        255 DNTAY--SYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQ  332 (661)
T ss_pred             ccccc--ccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHH
Confidence            22111  01134556666666662       11  55667777776654210      0011            122333


Q ss_pred             HHHH---HcCC--HHHHHHHHHcCChhHH-----------------HHH-------hhhcCCCCCchhHHHHhcC-----
Q 045083          243 YMAV---ANGS--AEIVAEILQNCPESAA-----------------RQM-------LEKTNEEQNTPLHEAVRLR-----  288 (556)
Q Consensus       243 ~~A~---~~g~--~~~v~~Ll~~~~~~~~-----------------~~~-------~~~~~~~g~t~Lh~A~~~g-----  288 (556)
                      |.+.   ..|.  .++++.|++.|++...                 +.+       ....+.+|+||||.|++.+     
T Consensus       333 ~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~  412 (661)
T PHA02917        333 HILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYN  412 (661)
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchh
Confidence            3322   3454  4477777777663110                 011       1233456999999887533     


Q ss_pred             ------------------CHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q 045083          289 ------------------SVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHA  350 (556)
Q Consensus       289 ------------------~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~  350 (556)
                                        ..++++.|+++|++++ .+|..|+||||+|+..++.+++++|+..|++++.+|..|+||||+
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN-~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~T~L~~  491 (661)
T PHA02917        413 FYTYTYKKGLCDMSYACPILSTINICLPYLKDIN-MIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAI  491 (661)
T ss_pred             hhhhhhhhccchhhhhhhhHHHHHHHHHCCCCCC-CCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHH
Confidence                              3567899999999986 778899999999999999999999999999999999999999999


Q ss_pred             HHh-cCChhHHHHHHHhhC
Q 045083          351 AVY-TYPTDILERVLIVRG  368 (556)
Q Consensus       351 A~~-~~~~~~~~~~~~~~~  368 (556)
                      |+. .+..++++.++....
T Consensus       492 A~~~~~~~~iv~~LL~~ga  510 (661)
T PHA02917        492 AINESRNIELLKMLLCHKP  510 (661)
T ss_pred             HHHhCCCHHHHHHHHHcCC
Confidence            986 567777777765543

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.7e-38  Score=317.18  Aligned_cols=298  Identities=15%  Similarity=0.200  Sum_probs=253.3

Q ss_pred             CHHHHHHHhcCCchHHHHhhhhhcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCC
Q 045083            2 DRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAK   81 (556)
Q Consensus         2 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   81 (556)
                      .++|+.|++.|+.+++++|++.|++++..+..|.||||.|+..|+.           +++++|++   .+.. .      
T Consensus        36 ~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~-----------~iv~~Ll~---~g~~-~------   94 (434)
T PHA02874         36 TTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAH-----------DIIKLLID---NGVD-T------   94 (434)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH-----------HHHHHHHH---CCCC-C------
Confidence            3789999999999999999999999999989999999999999999           99999954   3221 1      


Q ss_pred             CChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccc
Q 045083           82 GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSA  161 (556)
Q Consensus        82 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  161 (556)
                          -..+....+.++++.|++.|.+                ++.++..|.||||+|+..|+.+++++|++.|++++ ..
T Consensus        95 ----~~~~~~~~~~~~i~~ll~~g~d----------------~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n-~~  153 (434)
T PHA02874         95 ----SILPIPCIEKDMIKTILDCGID----------------VNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVN-IE  153 (434)
T ss_pred             ----CcchhccCCHHHHHHHHHCcCC----------------CCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCC-Cc
Confidence                1123445678999999999887                45678999999999999999999999999999987 67


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCH
Q 045083          162 NRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETP  241 (556)
Q Consensus       162 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~  241 (556)
                      |..|.||||+|+..|+.+++++|++++.+...      .+..|.||||.|+..|+.+++++|++.+++. ...+..|.||
T Consensus       154 d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~------~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i-~~~~~~g~Tp  226 (434)
T PHA02874        154 DDNGCYPIHIAIKHNFFDIIKLLLEKGAYANV------KDNNGESPLHNAAEYGDYACIKLLIDHGNHI-MNKCKNGFTP  226 (434)
T ss_pred             CCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCH
Confidence            88999999999999999999999999876432      6889999999999999999999999999985 6788899999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcC-CHHHHHHHHhcCCCCCccccCCCCCHHHHHHH
Q 045083          242 LYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLR-SVDVAKILIEADPHVPYSANRNSETPLYMAAA  320 (556)
Q Consensus       242 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  320 (556)
                      ||.|+..+. +.+++|+. +.      .++.+|..|+||||+|+..+ +.+++++|+++|++++ .+|..|+||||+|++
T Consensus       227 L~~A~~~~~-~~i~~Ll~-~~------~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n-~~d~~g~TpL~~A~~  297 (434)
T PHA02874        227 LHNAIIHNR-SAIELLIN-NA------SINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADIS-IKDNKGENPIDTAFK  297 (434)
T ss_pred             HHHHHHCCh-HHHHHHHc-CC------CCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCC-CCCCCCCCHHHHHHH
Confidence            999999765 56666664 33      25778899999999999876 7899999999999986 789999999999999


Q ss_pred             cC-CHHHHHHHHhcCCCCCCCCCCC-CcHHHHHHhcCCh
Q 045083          321 NG-SVKIVAKILQKCPSPAHEGPDG-KTALHAAVYTYPT  357 (556)
Q Consensus       321 ~~-~~~~v~~Ll~~~~~~~~~d~~g-~t~L~~A~~~~~~  357 (556)
                      ++ +.++++.|+..+...+..+..+ .+++..+......
T Consensus       298 ~~~~~~~ik~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~  336 (434)
T PHA02874        298 YINKDPVIKDIIANAVLIKEADKLKDSDFLEHIEIKDNK  336 (434)
T ss_pred             hCCccHHHHHHHHhcCchhhccccchhHHHHHHHHhccc
Confidence            88 6788899898887766555544 4455554443333

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.4e-37  Score=312.76  Aligned_cols=346  Identities=16%  Similarity=0.166  Sum_probs=260.7

Q ss_pred             CHHHHHHHhcC---CchHHHHhhhhhcccccccCCCCeeEEeeeccc--cccccccccccccchHHHHHHHHhhC-cccc
Q 045083            2 DRKLYEAAAKG---DIEPFREIARDELESIVTDVMKNTVLHVNIMRS--HLTLQTEEGEISSESTEFVEQILDLC-PSLL   75 (556)
Q Consensus         2 ~~~L~~A~~~g---~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g--~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~   75 (556)
                      .++||+|+..|   +.|+++.|+++|++++.+|..|+||||+|+..+  +.           |++++|++   .+ +...
T Consensus        42 ~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~-----------eIv~~Ll~---~~~~~~~  107 (672)
T PHA02730         42 NNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKS-----------QIVHLLIS---SYSNASN  107 (672)
T ss_pred             CcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcH-----------HHHHHHHh---cCCCCCc
Confidence            37899999997   599999999999999999999999999999977  67           99999954   32 2334


Q ss_pred             ccccCCCChHHHHHHH--hCcHHHHHHHHHHh-ccCCchhh-----hhhh-----------HHHHHHHh-----------
Q 045083           76 FQANAKGDSPLHLAAK--KGHTAIVEFLIVFA-NRQPIDLE-----RGVE-----------SAARQILK-----------  125 (556)
Q Consensus        76 ~~~~~~g~tpLh~A~~--~g~~~iv~~Ll~~~-~~~~~~~~-----~~~~-----------~~~~~~l~-----------  125 (556)
                      +..+..+++|||.++.  +++.++|++|++.+ .+++....     .+..           ...+.+++           
T Consensus       108 ~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~  187 (672)
T PHA02730        108 ELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFR  187 (672)
T ss_pred             ccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccc
Confidence            5567778999999988  89999999999733 33221100     1111           11111211           


Q ss_pred             --hhccCC-CcHhHHHH------hcCCHHHHHHHHhcCCCCcccccCCCCcHHHH--HHHcCCHHHHHHHHH--------
Q 045083          126 --MTNEEQ-NTPLHEAV------RLRSVDVVKILIKADPHVSYSANRNSETLLYM--AVANGSAEIVAEILQ--------  186 (556)
Q Consensus       126 --~~~~~g-~t~Lh~A~------~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~--A~~~g~~~~v~~Ll~--------  186 (556)
                        ..+..+ .|.||+++      .+++.|++++|+++|++++ ..|..|.||||+  +...|+.|++++|++        
T Consensus       188 ~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN-~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~  266 (672)
T PHA02730        188 SCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIH-GRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVY  266 (672)
T ss_pred             cccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCcccHHHHHHHHhcccccccc
Confidence              112222 34455333      4578999999999999987 889999999995  556678999999999        


Q ss_pred             ------------------------hCCChhHH-HHhh-------------hcCCCCCc---------------------H
Q 045083          187 ------------------------NCPQSAAR-QMLE-------------KTNEEQNT---------------------P  207 (556)
Q Consensus       187 ------------------------~~~~~~~~-~~~~-------------~~~~~g~t---------------------~  207 (556)
                                              ++.+.... ..++             ..+..|.+                     .
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~  346 (672)
T PHA02730        267 DDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAM  346 (672)
T ss_pred             ccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHH
Confidence                                    33332110 0000             13445544                     6


Q ss_pred             hHHHHhcC---CHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC----HHHHHHHHHcCChhHHHHHhhhcCCCCCch
Q 045083          208 LHEAVRLR---RVDVVKILIKADPHVPYSANRNSETPLYMAVANGS----AEIVAEILQNCPESAARQMLEKTNEEQNTP  280 (556)
Q Consensus       208 L~~A~~~~---~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~  280 (556)
                      ||.-..++   +.+++++|+++|+++. .. ..|.||||+|+..++    .++++.|+++|++.    .++.+|..|.||
T Consensus       347 l~~Y~~~~~~v~ieIvelLIs~GAdIN-~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~----dIN~kd~~G~T~  420 (672)
T PHA02730        347 LINYLHYGDMVSIPILRCMLDNGATMD-KT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHM----AINHVSNNGRLC  420 (672)
T ss_pred             HHHHHhcCCcCcHHHHHHHHHCCCCCC-cC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCc----cccccccCCCch
Confidence            77777755   5899999999999974 43 789999999998875    89999999998632    256778899999


Q ss_pred             hHH---HHhcC---------CHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCC-CCCcH
Q 045083          281 LHE---AVRLR---------SVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGP-DGKTA  347 (556)
Q Consensus       281 Lh~---A~~~g---------~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~-~g~t~  347 (556)
                      ||.   |...+         ..+++++|+++|++++ .+|..|+||||+|+..++.+++++|+.+|++++.+|. .|.||
T Consensus       421 Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADIN-akD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~Ta  499 (672)
T PHA02730        421 MYGLILSRFNNCGYHCYETILIDVFDILSKYMDDID-MIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTA  499 (672)
T ss_pred             HhHHHHHHhccccccccchhHHHHHHHHHhcccchh-ccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCH
Confidence            994   33332         2357999999999986 7899999999999999999999999999999999997 59999


Q ss_pred             HHHHHhc--CChhHHHHHHHhhCC
Q 045083          348 LHAAVYT--YPTDILERVLIVRGT  369 (556)
Q Consensus       348 L~~A~~~--~~~~~~~~~~~~~~~  369 (556)
                      ||+|+..  ++.++++.++..+..
T Consensus       500 L~~Aa~~~~~~~eIv~~LLs~ga~  523 (672)
T PHA02730        500 IQKSSYRRENKTKLVDLLLSYHPT  523 (672)
T ss_pred             HHHHHHhhcCcHHHHHHHHHcCCC
Confidence            9999984  677888887766543

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.7e-37  Score=315.45  Aligned_cols=309  Identities=20%  Similarity=0.194  Sum_probs=250.7

Q ss_pred             HHHHHHhcCCchHHHHhhhh----hcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCcccccccc
Q 045083            4 KLYEAAAKGDIEPFREIARD----ELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQAN   79 (556)
Q Consensus         4 ~L~~A~~~g~~~~v~~Ll~~----g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   79 (556)
                      .|+.++..++.+.+...++.    +...+.....+.||||.|+..|+.           +++++|++   . +..++..|
T Consensus         3 ~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~tPLh~A~~~g~~-----------e~vk~Ll~---~-gadvn~~d   67 (477)
T PHA02878          3 KLYKSMYTDNYETILKYIEYIDHTENYSTSASLIPFIPLHQAVEARNL-----------DVVKSLLT---R-GHNVNQPD   67 (477)
T ss_pred             hHHHHHHhccHHHHHHHHHHHhhhhhhcCcccccCcchHHHHHHcCCH-----------HHHHHHHH---C-CCCCCCCC
Confidence            58889999998777777665    111122334688999999999999           99999954   3 56788899


Q ss_pred             CCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcc
Q 045083           80 AKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSY  159 (556)
Q Consensus        80 ~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~  159 (556)
                      .+|.||||+||..|+.+++++|++.+....                  ...+.+|++.|+..++.++++.|+..+.+...
T Consensus        68 ~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~------------------~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~  129 (477)
T PHA02878         68 HRDLTPLHIICKEPNKLGMKEMIRSINKCS------------------VFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQ  129 (477)
T ss_pred             CCCCCHHHHHHHCccHhHHHHHHHHHhccc------------------cccchhhHHHHHHcCCHHHHHHHHhCcccCcc
Confidence            999999999999999999999998765421                  24678999999999999999999987543321


Q ss_pred             cccCCCCcHHHHHHHc--CCHHHHHHHHHhCCChhHHHHhhhcCCC-CCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCC
Q 045083          160 SANRNSETLLYMAVAN--GSAEIVAEILQNCPQSAARQMLEKTNEE-QNTPLHEAVRLRRVDVVKILIKADPHVPYSANR  236 (556)
Q Consensus       160 ~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~  236 (556)
                      ..+   ...+......  .+.+++++|++++++...      .+.. |.||||.|+..|+.+++++|++.++++ +..|.
T Consensus       130 ~~~---~~~~~~~~~~~~~~~~iv~~Ll~~gadin~------~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~-n~~d~  199 (477)
T PHA02878        130 TID---LVYIDKKSKDDIIEAEITKLLLSYGADINM------KDRHKGNTALHYATENKDQRLTELLLSYGANV-NIPDK  199 (477)
T ss_pred             cCc---HHHHhhccchhhHHHHHHHHHHHcCCCCCc------cCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC-CCcCC
Confidence            111   1111111112  235699999999977543      5666 999999999999999999999999985 78899


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhc-CCHHHHHHHHhcCCCCCccccCCCCCHH
Q 045083          237 NSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRL-RSVDVAKILIEADPHVPYSANRNSETPL  315 (556)
Q Consensus       237 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~g~t~L  315 (556)
                      .|.||||.|+..|+.++++.|++.+++      ++.+|..|+||||+|+.. ++.+++++|+++|++++...+..|.|||
T Consensus       200 ~g~tpLh~A~~~~~~~iv~~Ll~~ga~------in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpL  273 (477)
T PHA02878        200 TNNSPLHHAVKHYNKPIVHILLENGAS------TDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTAL  273 (477)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCC------CCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHH
Confidence            999999999999999999999999974      578889999999999976 7899999999999998744345899999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcC-ChhHHHHH
Q 045083          316 YMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTY-PTDILERV  363 (556)
Q Consensus       316 ~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~-~~~~~~~~  363 (556)
                      |+|  .++.+++++|++.|++++.+|.+|+||||+|+..+ ..+..+.+
T Consensus       274 h~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~~~~~~~~~l  320 (477)
T PHA02878        274 HSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRIL  320 (477)
T ss_pred             HHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHcCccchHHHH
Confidence            999  57789999999999999999999999999999854 33444433

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.9e-36  Score=302.21  Aligned_cols=322  Identities=17%  Similarity=0.176  Sum_probs=222.7

Q ss_pred             HHHHhhhhhcccc-cccCCCCeeEEeeeccc---cccccccccccccchHHHHHHHHhhCccccccccCCCChHHHHHHH
Q 045083           16 PFREIARDELESI-VTDVMKNTVLHVNIMRS---HLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKGDSPLHLAAK   91 (556)
Q Consensus        16 ~v~~Ll~~g~~~~-~~d~~g~t~Lh~A~~~g---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpLh~A~~   91 (556)
                      .++..++.-.+++ ..|.+|+||||+|+..|   +.           +++++|++.    +.+++.+|..|.||||+|+.
T Consensus        22 ~~~~~~~~~~~in~~kd~~G~TaLh~A~~~~~~~~~-----------eivklLLs~----GAdin~kD~~G~TPLh~Aa~   86 (672)
T PHA02730         22 KIKLEIETCHNLSKHIDRRGNNALHCYVSNKCDTDI-----------KIVRLLLSR----GVERLCRNNEGLTPLGVYSK   86 (672)
T ss_pred             HHHHHHHHhcchhhhcCCCCCcHHHHHHHcCCcCcH-----------HHHHHHHhC----CCCCcccCCCCCChHHHHHH
Confidence            4555666544666 77889999999999997   48           999999543    77888999999999999999


Q ss_pred             hC--cHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHh--cCCHHHHHHHHh-cCCCCccccc----
Q 045083           92 KG--HTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVR--LRSVDVVKILIK-ADPHVSYSAN----  162 (556)
Q Consensus        92 ~g--~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~--~g~~~~v~~Ll~-~~~~~~~~~~----  162 (556)
                      .|  +.|+|++|++.|+..+              .+..+..+.+|||.++.  +++.+++++|++ .+.+++...+    
T Consensus        87 ~~~~~~eIv~~Ll~~~~~~~--------------~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~  152 (672)
T PHA02730         87 RKYVKSQIVHLLISSYSNAS--------------NELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIH  152 (672)
T ss_pred             cCCCcHHHHHHHHhcCCCCC--------------cccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhcc
Confidence            77  7999999999976532              23345667888888877  888888888886 4455543322    


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHH-hh-hcCCCCCcHhHHHH------hcCCHHHHHHHHhcCCCCCccC
Q 045083          163 RNSETLLYMAVANGSAEIVAEILQNCPQSAARQM-LE-KTNEEQNTPLHEAV------RLRRVDVVKILIKADPHVPYSA  234 (556)
Q Consensus       163 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~-~~~~~g~t~L~~A~------~~~~~~~v~~Ll~~~~~~~~~~  234 (556)
                      ..|.+|++++...++.|+|++|++++++...... .. ..++.+.|.||+++      ..+..|++++|+++|+++ +.+
T Consensus       153 ~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadI-N~k  231 (672)
T PHA02730        153 CLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSI-HGR  231 (672)
T ss_pred             ccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCC-CCC
Confidence            3678888888888888888888888876521100 00 12233344555333      445778888888888885 778


Q ss_pred             CCCCCCHHHH--HHHcCCHHHHHHHHH--------------------------------cCChhHH--------------
Q 045083          235 NRNSETPLYM--AVANGSAEIVAEILQ--------------------------------NCPESAA--------------  266 (556)
Q Consensus       235 ~~~g~t~L~~--A~~~g~~~~v~~Ll~--------------------------------~~~~~~~--------------  266 (556)
                      |.+|+||||+  +...|+.|+++.|++                                ++.+...              
T Consensus       232 d~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~  311 (672)
T PHA02730        232 DEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDV  311 (672)
T ss_pred             CCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhh
Confidence            8888888884  455567888888887                                2322111              


Q ss_pred             ------------------------------------HHH---------------------hhhcCCCCCchhHHHHhcCC
Q 045083          267 ------------------------------------RQM---------------------LEKTNEEQNTPLHEAVRLRS  289 (556)
Q Consensus       267 ------------------------------------~~~---------------------~~~~~~~g~t~Lh~A~~~g~  289 (556)
                                                          ..+                     ++. +..|+||||+|+..++
T Consensus       312 ~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~-k~~G~TpLH~Aa~~nn  390 (672)
T PHA02730        312 MRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDK-TTDNNYPLHDYFVNNN  390 (672)
T ss_pred             hhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCc-CCCCCcHHHHHHHHcC
Confidence                                                000                     111 2567778887777664


Q ss_pred             ----HHHHHHHHhcCCC-CCccccCCCCCHHHH---HHHcC---------CHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q 045083          290 ----VDVAKILIEADPH-VPYSANRNSETPLYM---AAANG---------SVKIVAKILQKCPSPAHEGPDGKTALHAAV  352 (556)
Q Consensus       290 ----~~~v~~Ll~~~~~-~~~~~~~~g~t~L~~---A~~~~---------~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~  352 (556)
                          .+++++|+++|++ ..+.+|..|+||||.   |...+         ..+++++|+.+|+++|.+|..|+||||+|+
T Consensus       391 n~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa  470 (672)
T PHA02730        391 NIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAV  470 (672)
T ss_pred             CcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHH
Confidence                6788888877763 123566777887773   33222         124577777777778888888888888888


Q ss_pred             hcCChhHHHHHHHhhC
Q 045083          353 YTYPTDILERVLIVRG  368 (556)
Q Consensus       353 ~~~~~~~~~~~~~~~~  368 (556)
                      ..++.++++.++..+.
T Consensus       471 ~~~~~eive~LI~~GA  486 (672)
T PHA02730        471 DVNNIQFARRLLEYGA  486 (672)
T ss_pred             HhCCHHHHHHHHHCCC
Confidence            7777777777765544

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.2e-36  Score=307.73  Aligned_cols=295  Identities=16%  Similarity=0.209  Sum_probs=240.7

Q ss_pred             HHHHHHHhcCCchHHHHhhhhhcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCCC
Q 045083            3 RKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKG   82 (556)
Q Consensus         3 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g   82 (556)
                      ++||.|++.|+.++|++|+++|++++..|.+|.||||+||..|+.           +.++.+++.....      ....+
T Consensus        39 tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~-----------~~v~~Ll~~~~~~------~~~~~  101 (477)
T PHA02878         39 IPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNK-----------LGMKEMIRSINKC------SVFYT  101 (477)
T ss_pred             chHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccH-----------hHHHHHHHHHhcc------ccccc
Confidence            479999999999999999999999999999999999999999999           9999996642211      11567


Q ss_pred             ChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhc--CCHHHHHHHHhcCCCCccc
Q 045083           83 DSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL--RSVDVVKILIKADPHVSYS  160 (556)
Q Consensus        83 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~--g~~~~v~~Ll~~~~~~~~~  160 (556)
                      .+|++.|+..|+.+++++|+..+........                  ...+......  .+.+++++|++.|++++ .
T Consensus       102 ~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~iv~~Ll~~gadin-~  162 (477)
T PHA02878        102 LVAIKDAFNNRNVEIFKIILTNRYKNIQTID------------------LVYIDKKSKDDIIEAEITKLLLSYGADIN-M  162 (477)
T ss_pred             hhhHHHHHHcCCHHHHHHHHhCcccCcccCc------------------HHHHhhccchhhHHHHHHHHHHHcCCCCC-c
Confidence            8999999999999999999976543211000                  0001111111  23469999999999998 5


Q ss_pred             ccCC-CCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCC
Q 045083          161 ANRN-SETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSE  239 (556)
Q Consensus       161 ~~~~-g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~  239 (556)
                      .+.. |.||||+|+..|+.+++++|++++++...      .+..|.||||.|+..++.++++.|++.+++. +.+|..|.
T Consensus       163 ~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~------~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~i-n~~d~~g~  235 (477)
T PHA02878        163 KDRHKGNTALHYATENKDQRLTELLLSYGANVNI------PDKTNNSPLHHAVKHYNKPIVHILLENGAST-DARDKCGN  235 (477)
T ss_pred             cCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCC------cCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC-CCCCCCCC
Confidence            5666 99999999999999999999999876433      7889999999999999999999999999995 78899999


Q ss_pred             CHHHHHHHc-CCHHHHHHHHHcCChhHHHHHhhhcCC-CCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHH
Q 045083          240 TPLYMAVAN-GSAEIVAEILQNCPESAARQMLEKTNE-EQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYM  317 (556)
Q Consensus       240 t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~~~~-~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~  317 (556)
                      ||||+|+.. ++.+++++|+++|.+      ++.++. .|.||||+|  .++.+++++|+++|++++ ..|..|+||||+
T Consensus       236 TpLh~A~~~~~~~~iv~~Ll~~gad------vn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin-~~d~~g~TpL~~  306 (477)
T PHA02878        236 TPLHISVGYCKDYDILKLLLEHGVD------VNAKSYILGLTALHSS--IKSERKLKLLLEYGADIN-SLNSYKLTPLSS  306 (477)
T ss_pred             CHHHHHHHhcCCHHHHHHHHHcCCC------CCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCC-CcCCCCCCHHHH
Confidence            999999976 789999999999975      445544 799999999  578899999999999986 789999999999


Q ss_pred             HHHcC-CHHHHHHHHhc-----CCCCCCCCCCCCcHHH
Q 045083          318 AAANG-SVKIVAKILQK-----CPSPAHEGPDGKTALH  349 (556)
Q Consensus       318 A~~~~-~~~~v~~Ll~~-----~~~~~~~d~~g~t~L~  349 (556)
                      |++.+ ..++++.|+.+     +.+++.++..|.++-.
T Consensus       307 A~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~g~~~n~  344 (477)
T PHA02878        307 AVKQYLCINIGRILISNICLLKRIKPDIKNSEGFIDNM  344 (477)
T ss_pred             HHHHcCccchHHHHHHHHHHHHhccCcccCcHHHHHHH
Confidence            99864 45677776554     4556777777766543

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.1e-36  Score=307.56  Aligned_cols=279  Identities=17%  Similarity=0.236  Sum_probs=229.1

Q ss_pred             hcCCchHHHHhhhhhcccccccCCCCeeEEeeecc--ccccccccccccccchHHHHHHHHhhCccccccccCCCChHHH
Q 045083           10 AKGDIEPFREIARDELESIVTDVMKNTVLHVNIMR--SHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKGDSPLH   87 (556)
Q Consensus        10 ~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~--g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpLh   87 (556)
                      ...+.++++.|+++|++++.. ..|.|+||.++..  ++.           +++++|++   . +.+++.++ .+.||||
T Consensus        12 ~~~~~~~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~~-----------~iv~~Ll~---~-GAdvn~~~-~~~tpL~   74 (494)
T PHA02989         12 DTVDKNALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKI-----------KIVKLLID---N-GADVNYKG-YIETPLC   74 (494)
T ss_pred             CcCcHHHHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCCh-----------HHHHHHHH---c-CCCccCCC-CCCCcHH
Confidence            358899999999999999988 6789998765443  367           89999955   3 56666665 5789999


Q ss_pred             HHHHhC------cHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhc---CCHHHHHHHHhcCCCCc
Q 045083           88 LAAKKG------HTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL---RSVDVVKILIKADPHVS  158 (556)
Q Consensus        88 ~A~~~g------~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~  158 (556)
                      .|+.++      +.+++++|+++|++                ++.+|..|.||||.|+..   |+.+++++|+++|++++
T Consensus        75 ~a~~~~~~~~~~~~~iv~~Ll~~Gad----------------in~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin  138 (494)
T PHA02989         75 AVLRNREITSNKIKKIVKLLLKFGAD----------------INLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVN  138 (494)
T ss_pred             HHHhccCcchhhHHHHHHHHHHCCCC----------------CCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcc
Confidence            998754      57899999999988                566889999999988755   67899999999999984


Q ss_pred             ccccCCCCcHHHHHHHc--CCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcC----CHHHHHHHHhcCCCCCc
Q 045083          159 YSANRNSETLLYMAVAN--GSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLR----RVDVVKILIKADPHVPY  232 (556)
Q Consensus       159 ~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~----~~~~v~~Ll~~~~~~~~  232 (556)
                      ...+..|.||||+|+..  ++.+++++|++++++....     .+..|.||||.|+..+    +.+++++|+++|.++ +
T Consensus       139 ~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~-----~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~v-n  212 (494)
T PHA02989        139 DVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEK-----TSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNI-E  212 (494)
T ss_pred             cccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccc-----ccccCCChHHHHHhcccccccHHHHHHHHhCCCCc-c
Confidence            47888999999998764  6889999999999775432     4678999999987754    889999999999985 6


Q ss_pred             cCCCCCCCHHHHHHHcC------CHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCcc
Q 045083          233 SANRNSETPLYMAVANG------SAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYS  306 (556)
Q Consensus       233 ~~~~~g~t~L~~A~~~g------~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~  306 (556)
                      ..+..+.+|||.++..+      ..+++++|++. .      .++.+|..|+||||+|+..|+.+++++|++.|++++ .
T Consensus       213 ~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~-a------dvn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin-~  284 (494)
T PHA02989        213 TNNNGSESVLESFLDNNKILSKKEFKVLNFILKY-I------KINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIY-N  284 (494)
T ss_pred             ccCCccccHHHHHHHhchhhcccchHHHHHHHhC-C------CCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCcc-c
Confidence            77778999999876543      46777776654 3      367788889999999999999999999999999886 7


Q ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHhcCC
Q 045083          307 ANRNSETPLYMAAANGSVKIVAKILQKCP  335 (556)
Q Consensus       307 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~  335 (556)
                      +|..|+||||+|+++|+.++++.||+.++
T Consensus       285 ~d~~G~TpL~~A~~~~~~~iv~~LL~~~p  313 (494)
T PHA02989        285 VSKDGDTVLTYAIKHGNIDMLNRILQLKP  313 (494)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            78899999999999999999999887654

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=3e-35  Score=274.71  Aligned_cols=233  Identities=17%  Similarity=0.165  Sum_probs=203.0

Q ss_pred             hCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHH
Q 045083           92 KGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYM  171 (556)
Q Consensus        92 ~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~  171 (556)
                      .++.+++++|+++++.                  .+|.+|.||||+|+..|+.+++++|++.+++.+.   ..+.||||+
T Consensus         9 ~~~~~~~~~Lis~~a~------------------~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~---~d~~TpLh~   67 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF------------------KADVHGHSALYYAIADNNVRLVCTLLNAGALKNL---LENEFPLHQ   67 (284)
T ss_pred             cCHHHHHHHHHhCCCC------------------CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcC---CCCCCHHHH
Confidence            3678999999987753                  3688999999999999999999999999988763   247899999


Q ss_pred             HHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCC-CCHHHHHHHcCC
Q 045083          172 AVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNS-ETPLYMAVANGS  250 (556)
Q Consensus       172 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g-~t~L~~A~~~g~  250 (556)
                      |+..|+.+++++|++++.+...      ++..|.||||+|+..|+.+++++|+++++++ +..+..| .||||+|+..|+
T Consensus        68 Aa~~g~~eiV~lLL~~Gadvn~------~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~~g~  140 (284)
T PHA02791         68 AATLEDTKIVKILLFSGMDDSQ------FDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLND  140 (284)
T ss_pred             HHHCCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHHcCC
Confidence            9999999999999998876433      7899999999999999999999999999986 5667777 489999999999


Q ss_pred             HHHHHHHHHcCChhHHHHHhhhcC-CCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCH-HHHHHHcCCHHHHH
Q 045083          251 AEIVAEILQNCPESAARQMLEKTN-EEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETP-LYMAAANGSVKIVA  328 (556)
Q Consensus       251 ~~~v~~Ll~~~~~~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v~  328 (556)
                      .+++++|+++++..        .| ..|.||||+|+.+|+.++++.|+++|++++ .+|..|.|| ||+|+.+|+.++++
T Consensus       141 ~eivk~LL~~~~~~--------~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n-~~d~~g~t~~L~~Aa~~~~~e~v~  211 (284)
T PHA02791        141 VSIVSYFLSEIPST--------FDLAILLSCIHITIKNGHVDMMILLLDYMTSTN-TNNSLLFIPDIKLAIDNKDLEMLQ  211 (284)
T ss_pred             HHHHHHHHhcCCcc--------cccccCccHHHHHHHcCCHHHHHHHHHCCCCCC-cccCCCCChHHHHHHHcCCHHHHH
Confidence            99999999987531        12 358999999999999999999999999976 678888987 99999999999999


Q ss_pred             HHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHHHHHHhhC
Q 045083          329 KILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRG  368 (556)
Q Consensus       329 ~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~~~~~~~  368 (556)
                      +|+.+|++++.+|..| ++|      +..|+++.++.+-.
T Consensus       212 lLl~~Ga~in~~~~~~-~~l------~~~e~~~~ll~~~~  244 (284)
T PHA02791        212 ALFKYDINIYSVNLEN-VLL------DDAEIAKMIIEKHV  244 (284)
T ss_pred             HHHHCCCCCccCcccC-ccC------CCHHHHHHHHHhhh
Confidence            9999999999999855 665      66788888776543

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.3e-35  Score=298.30  Aligned_cols=243  Identities=21%  Similarity=0.255  Sum_probs=218.5

Q ss_pred             CChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccc
Q 045083           82 GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSA  161 (556)
Q Consensus        82 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  161 (556)
                      .+++||.|+..|+.+++++|++.|.+                ++..+..|.||||+|+..|+.+++++|++.|+++. ..
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~----------------~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~   64 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGIN----------------PNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPD-VK   64 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCC----------------CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc-cc
Confidence            47899999999999999999999887                34567889999999999999999999999999876 56


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCH
Q 045083          162 NRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETP  241 (556)
Q Consensus       162 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~  241 (556)
                      +..+.+|||.|+..|+.+++++|++.+......     .+.+|.||||.|+..|+.+++++|++.|++. +..+.+|.||
T Consensus        65 ~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~-~~~~~~g~tp  138 (413)
T PHA02875         65 YPDIESELHDAVEEGDVKAVEELLDLGKFADDV-----FYKDGMTPLHLATILKKLDIMKLLIARGADP-DIPNTDKFSP  138 (413)
T ss_pred             CCCcccHHHHHHHCCCHHHHHHHHHcCCccccc-----ccCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCCH
Confidence            678999999999999999999999988654322     5678999999999999999999999999985 7889999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCC-CCHHHHHHH
Q 045083          242 LYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNS-ETPLYMAAA  320 (556)
Q Consensus       242 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-~t~L~~A~~  320 (556)
                      ||+|+..|+.+++++|++++.+      ++.+|..|.||||+|+..|+.+++++|++.|++++. .+..| .||+|+|+.
T Consensus       139 Lh~A~~~~~~~~v~~Ll~~g~~------~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~-~~~~~~~t~l~~A~~  211 (413)
T PHA02875        139 LHLAVMMGDIKGIELLIDHKAC------LDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDY-FGKNGCVAALCYAIE  211 (413)
T ss_pred             HHHHHHcCCHHHHHHHHhcCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCc-CCCCCCchHHHHHHH
Confidence            9999999999999999999874      567889999999999999999999999999999874 45554 689999999


Q ss_pred             cCCHHHHHHHHhcCCCCCCC---CCCCCcHHHHHHhc
Q 045083          321 NGSVKIVAKILQKCPSPAHE---GPDGKTALHAAVYT  354 (556)
Q Consensus       321 ~~~~~~v~~Ll~~~~~~~~~---d~~g~t~L~~A~~~  354 (556)
                      .|+.+++++|+++|++++..   +..|.||++++...
T Consensus       212 ~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~~~  248 (413)
T PHA02875        212 NNKIDIVRLFIKRGADCNIMFMIEGEECTILDMICNM  248 (413)
T ss_pred             cCCHHHHHHHHHCCcCcchHhhcCCCchHHHHHHHhh
Confidence            99999999999999998754   77899999988754

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=2.7e-35  Score=272.93  Aligned_cols=218  Identities=24%  Similarity=0.364  Sum_probs=189.6

Q ss_pred             HHHHhcCCchHHHHhhhhhcc-----cccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccc-----c
Q 045083            6 YEAAAKGDIEPFREIARDELE-----SIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSL-----L   75 (556)
Q Consensus         6 ~~A~~~g~~~~v~~Ll~~g~~-----~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~   75 (556)
                      +.|++.|.+..++.|+-+..+     .--.+.+|.|||-+||++||.           ++++++++.+...+..     .
T Consensus         9 ~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~-----------~vVeyLle~~~a~~e~~GsV~F   77 (615)
T KOG0508|consen    9 INAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHA-----------DVVEYLLEHCRASPEQGGSVRF   77 (615)
T ss_pred             HHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcH-----------HHHHHHHHHhcCCccCCceEEe
Confidence            479999999999998876321     112347899999999999999           9999997654433322     2


Q ss_pred             ccccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCC
Q 045083           76 FQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADP  155 (556)
Q Consensus        76 ~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~  155 (556)
                      +-....|-+||..|+..||.++||.|+++|+.                ++.......|||..||.-|+.+++++|+++++
T Consensus        78 Dge~IegappLWaAsaAGHl~vVk~L~~~ga~----------------VN~tT~TNStPLraACfDG~leivKyLvE~ga  141 (615)
T KOG0508|consen   78 DGETIEGAPPLWAASAAGHLEVVKLLLRRGAS----------------VNDTTRTNSTPLRAACFDGHLEIVKYLVEHGA  141 (615)
T ss_pred             CCcccCCCchhhHHhccCcHHHHHHHHHhcCc----------------cccccccCCccHHHHHhcchhHHHHHHHHcCC
Confidence            23345678999999999999999999999977                55667778899999999999999999999999


Q ss_pred             CCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCC
Q 045083          156 HVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSAN  235 (556)
Q Consensus       156 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~  235 (556)
                      ++. ..|+.|.|.|++||..|+.+++++|++.+++...      ++..|+|+||.|+..|+.+++++|++++..+  ..|
T Consensus       142 d~~-IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~------ks~kGNTALH~caEsG~vdivq~Ll~~ga~i--~~d  212 (615)
T KOG0508|consen  142 DPE-IANRHGHTCLMIACYKGHVDIAQYLLEQGADVNA------KSYKGNTALHDCAESGSVDIVQLLLKHGAKI--DVD  212 (615)
T ss_pred             CCc-ccccCCCeeEEeeeccCchHHHHHHHHhCCCcch------hcccCchHHHhhhhcccHHHHHHHHhCCcee--eec
Confidence            998 8999999999999999999999999999988654      7999999999999999999999999999885  578


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH
Q 045083          236 RNSETPLYMAVANGSAEIVAEILQ  259 (556)
Q Consensus       236 ~~g~t~L~~A~~~g~~~~v~~Ll~  259 (556)
                      ..|.|||..|+..|+.++|+.|++
T Consensus       213 ~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  213 GHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             CCCCchHHHHhhhcchHHHHHHhc
Confidence            889999999999999999999984

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=2e-36  Score=317.35  Aligned_cols=339  Identities=25%  Similarity=0.333  Sum_probs=273.4

Q ss_pred             HHHHHHHhcCCchHHHHhhhhhcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCCC
Q 045083            3 RKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKG   82 (556)
Q Consensus         3 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g   82 (556)
                      ++||.|++.|+++++++++.+|+.++..+..|.||+|.|++.+..           ++.+++++   + +..+...+..+
T Consensus       244 ~~lh~a~~~g~~~i~~~l~~~ga~~~~~~vr~~tplh~AA~~~~~-----------e~~~~ll~---~-ga~~~~~~~~~  308 (1143)
T KOG4177|consen  244 TPLHVAAFMGHLDIVKLLLQHGASVNVSTVRGETPLHMAARAGQV-----------EVCKLLLQ---N-GADVLAKARDD  308 (1143)
T ss_pred             cHHHHHHhccchhHHHHHHhcccccCcccccccCcchhhhccchh-----------hhHhhhhc---c-Ccccccccccc
Confidence            478999999999999999999999998888999999999999998           88888844   3 45566677778


Q ss_pred             ChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHH-------HH----------HHHhhhccCCCcHhHHHHhcCCHH
Q 045083           83 DSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESA-------AR----------QILKMTNEEQNTPLHEAVRLRSVD  145 (556)
Q Consensus        83 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~-------~~----------~~l~~~~~~g~t~Lh~A~~~g~~~  145 (556)
                      .||+|+|...|+.++++.++..++..+..-..+....       ..          .--...++.|.||+|.|+..|..+
T Consensus       309 kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~  388 (1143)
T KOG4177|consen  309 QTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVS  388 (1143)
T ss_pred             cChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchh
Confidence            8888888888888888888877655433111111100       00          002234567899999999999999


Q ss_pred             HHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcC-CHHHHHHHH
Q 045083          146 VVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLR-RVDVVKILI  224 (556)
Q Consensus       146 ~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll  224 (556)
                      +++++++++.+++ ..++.|.||||.|+..++.++++.+++.+.+...      .+..|.||+|+|+..| ..+....++
T Consensus       389 ~v~Lll~~ga~~~-~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~------~~~lG~T~lhvaa~~g~~~~~~~~l~  461 (1143)
T KOG4177|consen  389 VVELLLEAGADPN-SAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNA------KAKLGYTPLHVAAKKGRYLQIARLLL  461 (1143)
T ss_pred             HHHhhhhccCCcc-cCCCCCcceeeehhhccCcceEEEEeccCCChhh------HhhcCCChhhhhhhcccHhhhhhhHh
Confidence            9999999999966 7888899999999999999999999998876544      6778888888888888 677777777


Q ss_pred             hcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHH---------------------------HHHhhhcCCCC
Q 045083          225 KADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAA---------------------------RQMLEKTNEEQ  277 (556)
Q Consensus       225 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~---------------------------~~~~~~~~~~g  277 (556)
                      +.+.+ ++..-..|.||||+|+..|+.++++.+++.+.....                           ...++.++..|
T Consensus       462 ~~g~~-~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~  540 (1143)
T KOG4177|consen  462 QYGAD-PNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRG  540 (1143)
T ss_pred             hcCCC-cchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccc
Confidence            77766 477788888888888888888888888876521000                           00234567889


Q ss_pred             CchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCCh
Q 045083          278 NTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPT  357 (556)
Q Consensus       278 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~  357 (556)
                      +||||.|+.+|+.++|++|+++|++++ .+++.|+||||.|+..|+.+|+++|+++|+++|..|.+|.|||++|+..+..
T Consensus       541 ~TpLh~A~~~g~v~~VkfLLe~gAdv~-ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~  619 (1143)
T KOG4177|consen  541 YTPLHVAVHYGNVDLVKFLLEHGADVN-AKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYL  619 (1143)
T ss_pred             cchHHHHHhcCCchHHHHhhhCCcccc-ccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhccc
Confidence            999999999999999999999999997 6679999999999999999999999999999999999999999999999988


Q ss_pred             hHHHHHHH
Q 045083          358 DILERVLI  365 (556)
Q Consensus       358 ~~~~~~~~  365 (556)
                      +.++.+..
T Consensus       620 ~~~k~l~~  627 (1143)
T KOG4177|consen  620 SVVKLLKV  627 (1143)
T ss_pred             chhhHHHh
Confidence            87755543

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.7e-35  Score=273.38  Aligned_cols=231  Identities=21%  Similarity=0.273  Sum_probs=198.9

Q ss_pred             chHHHHHHHHhhCccccccccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHH
Q 045083           59 ESTEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEA  138 (556)
Q Consensus        59 ~~~~~l~~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A  138 (556)
                      +++++|++   .+.   +..|.+|.||||+|+..|+.+++++|++.+++.+                .  .+|.||||+|
T Consensus        13 ~~~~~Lis---~~a---~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n----------------~--~d~~TpLh~A   68 (284)
T PHA02791         13 QLKSFLSS---KDA---FKADVHGHSALYYAIADNNVRLVCTLLNAGALKN----------------L--LENEFPLHQA   68 (284)
T ss_pred             HHHHHHHh---CCC---CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCc----------------C--CCCCCHHHHH
Confidence            78888844   322   4679999999999999999999999999987632                2  2478999999


Q ss_pred             HhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCC-CcHhHHHHhcCCH
Q 045083          139 VRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQ-NTPLHEAVRLRRV  217 (556)
Q Consensus       139 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g-~t~L~~A~~~~~~  217 (556)
                      +..|+.+++++|++.|++++ ..|..|.||||+|+..|+.+++++|++++++...      .+..| .||||.|+..|+.
T Consensus        69 a~~g~~eiV~lLL~~Gadvn-~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~------~~~~g~~TpL~~Aa~~g~~  141 (284)
T PHA02791         69 ATLEDTKIVKILLFSGMDDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMF------YGKTGWKTSFYHAVMLNDV  141 (284)
T ss_pred             HHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCc------cCCCCCcHHHHHHHHcCCH
Confidence            99999999999999999987 7889999999999999999999999999876432      56666 5899999999999


Q ss_pred             HHHHHHHhcCCCCCccCC-CCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCch-hHHHHhcCCHHHHHH
Q 045083          218 DVVKILIKADPHVPYSAN-RNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTP-LHEAVRLRSVDVAKI  295 (556)
Q Consensus       218 ~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~-Lh~A~~~g~~~~v~~  295 (556)
                      +++++|++++++.   .| ..|.||||+|+..|+.++++.|++++++      ++.+|..|.|| ||+|+.+|+.+++++
T Consensus       142 eivk~LL~~~~~~---~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd------~n~~d~~g~t~~L~~Aa~~~~~e~v~l  212 (284)
T PHA02791        142 SIVSYFLSEIPST---FDLAILLSCIHITIKNGHVDMMILLLDYMTS------TNTNNSLLFIPDIKLAIDNKDLEMLQA  212 (284)
T ss_pred             HHHHHHHhcCCcc---cccccCccHHHHHHHcCCHHHHHHHHHCCCC------CCcccCCCCChHHHHHHHcCCHHHHHH
Confidence            9999999987653   23 3589999999999999999999999985      46777888887 999999999999999


Q ss_pred             HHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCC
Q 045083          296 LIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSP  337 (556)
Q Consensus       296 Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~  337 (556)
                      |+++|++++ .+|.. .++|      ++.|++++||+++.+.
T Consensus       213 Ll~~Ga~in-~~~~~-~~~l------~~~e~~~~ll~~~~~~  246 (284)
T PHA02791        213 LFKYDINIY-SVNLE-NVLL------DDAEIAKMIIEKHVEY  246 (284)
T ss_pred             HHHCCCCCc-cCccc-CccC------CCHHHHHHHHHhhhhh
Confidence            999999986 67764 4555      8899999999987663

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.8e-35  Score=304.18  Aligned_cols=333  Identities=15%  Similarity=0.183  Sum_probs=190.3

Q ss_pred             chHHHHhhhhhcccccccCCCCeeEEeeecc---ccccccccccccccchHHHHHHHHhhCccccccccCCCChHHHHHH
Q 045083           14 IEPFREIARDELESIVTDVMKNTVLHVNIMR---SHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKGDSPLHLAA   90 (556)
Q Consensus        14 ~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~---g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpLh~A~   90 (556)
                      ++.+++|+.+|...+..|.+|+||||+|+..   |+.           ++++.|++   . +..++..+..|+||||+|+
T Consensus        12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~-----------~~v~~Ll~---~-ga~v~~~~~~g~TpL~~Aa   76 (661)
T PHA02917         12 LDELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNV-----------EVVKLLLD---S-GTNPLHKNWRQLTPLEEYT   76 (661)
T ss_pred             HHHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCcH-----------HHHHHHHH---C-CCCccccCCCCCCHHHHHH
Confidence            5778999988888888899999999997555   778           99999954   3 5667788999999999999


Q ss_pred             HhCcHH----HHHHHHHHhccCCchh---------hhhhhHHHHHH------HhhhccCCCcHhHHHH--hcCCHHHHHH
Q 045083           91 KKGHTA----IVEFLIVFANRQPIDL---------ERGVESAARQI------LKMTNEEQNTPLHEAV--RLRSVDVVKI  149 (556)
Q Consensus        91 ~~g~~~----iv~~Ll~~~~~~~~~~---------~~~~~~~~~~~------l~~~~~~g~t~Lh~A~--~~g~~~~v~~  149 (556)
                      ..|+.+    +++.|++.+...+.+.         ..+.....+.+      ++.+|..|.||||.|+  ..|+.+++++
T Consensus        77 ~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivkl  156 (661)
T PHA02917         77 NSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDL  156 (661)
T ss_pred             HcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHH
Confidence            999855    5567776543211100         00000011111      2234444555555322  2445555555


Q ss_pred             HHhcCCCCccc--ccCCC-----------CcHHHHHHH-----------cCCHHHHHHHHHhCCChhHHHHhhhcCCCCC
Q 045083          150 LIKADPHVSYS--ANRNS-----------ETLLYMAVA-----------NGSAEIVAEILQNCPQSAARQMLEKTNEEQN  205 (556)
Q Consensus       150 Ll~~~~~~~~~--~~~~g-----------~t~L~~A~~-----------~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~  205 (556)
                      |+++|++++..  .+..|           .||||+|+.           .++.+++++|++++.+...      .+.+|.
T Consensus       157 Li~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~------~d~~G~  230 (661)
T PHA02917        157 FIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSS------IDKNYC  230 (661)
T ss_pred             HHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCccc------CCCCCC
Confidence            55555544311  11223           255555543           2344555555555544321      445555


Q ss_pred             cHhHHHHhcCCH--HHHHHHHhcCCCCC---ccCCCCCCCHHHHHHHc---------CCHHHHHHHHHcCChhHHHH-Hh
Q 045083          206 TPLHEAVRLRRV--DVVKILIKADPHVP---YSANRNSETPLYMAVAN---------GSAEIVAEILQNCPESAARQ-ML  270 (556)
Q Consensus       206 t~L~~A~~~~~~--~~v~~Ll~~~~~~~---~~~~~~g~t~L~~A~~~---------g~~~~v~~Ll~~~~~~~~~~-~~  270 (556)
                      ||||+|+.+|+.  ++++.|++ +.+..   ...|..|.+|+|+|+.-         .+.++++.|++.|.+..... ..
T Consensus       231 TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~  309 (661)
T PHA02917        231 TALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIV  309 (661)
T ss_pred             cHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeee
Confidence            555555555442  45555543 33221   12333444555555421         13455555555553210000 00


Q ss_pred             hh------------cCCCCCchhHHHH---hcCC--HHHHHHHHhcCCCCCc----------------------------
Q 045083          271 EK------------TNEEQNTPLHEAV---RLRS--VDVAKILIEADPHVPY----------------------------  305 (556)
Q Consensus       271 ~~------------~~~~g~t~Lh~A~---~~g~--~~~v~~Ll~~~~~~~~----------------------------  305 (556)
                      +.            ....+.+++|.+.   ..|.  .+++++|++.|++++.                            
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~  389 (661)
T PHA02917        310 PLWRNDKETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDA  389 (661)
T ss_pred             cccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCc
Confidence            00            0112333434333   3454  4577777777665431                            


Q ss_pred             -cccCCCCCHHHHHHHcC-----------------------CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHH
Q 045083          306 -SANRNSETPLYMAAANG-----------------------SVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE  361 (556)
Q Consensus       306 -~~~~~g~t~L~~A~~~~-----------------------~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~  361 (556)
                       ..+.+|+||||.|++.+                       ..++++.|+.+|+++|.+|..|+||||+|+..++.++++
T Consensus       390 ~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~  469 (661)
T PHA02917        390 VNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVS  469 (661)
T ss_pred             cccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHH
Confidence             22446999999987543                       356789999999999999999999999999999988888


Q ss_pred             HHHHhhC
Q 045083          362 RVLIVRG  368 (556)
Q Consensus       362 ~~~~~~~  368 (556)
                      .++..+.
T Consensus       470 ~Ll~~GA  476 (661)
T PHA02917        470 LLLESGS  476 (661)
T ss_pred             HHHHCcC
Confidence            8876554

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-34  Score=298.53  Aligned_cols=280  Identities=19%  Similarity=0.230  Sum_probs=234.4

Q ss_pred             cccchHHHHHHHHhhCccccccccCCCChHHHHHHHh--CcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCc
Q 045083           56 ISSESTEFVEQILDLCPSLLFQANAKGDSPLHLAAKK--GHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNT  133 (556)
Q Consensus        56 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpLh~A~~~--g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t  133 (556)
                      +..+++++|++   . +.+++.. .+|.||||.++..  ++.++|++|+++|++.                +.++ .+.|
T Consensus        14 ~~~~~v~~LL~---~-GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdv----------------n~~~-~~~t   71 (494)
T PHA02989         14 VDKNALEFLLR---T-GFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADV----------------NYKG-YIET   71 (494)
T ss_pred             CcHHHHHHHHH---c-CCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCc----------------cCCC-CCCC
Confidence            34499999944   3 5567766 6799999876554  3789999999999983                3344 5799


Q ss_pred             HhHHHHhcC------CHHHHHHHHhcCCCCcccccCCCCcHHHHHHHc---CCHHHHHHHHHhCCChhHHHHhhhcCCCC
Q 045083          134 PLHEAVRLR------SVDVVKILIKADPHVSYSANRNSETLLYMAVAN---GSAEIVAEILQNCPQSAARQMLEKTNEEQ  204 (556)
Q Consensus       134 ~Lh~A~~~g------~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g  204 (556)
                      |||.|+.++      +.+++++|+++|++++ ..+..|.||||.|+..   |+.+++++|++++++...     ..+..|
T Consensus        72 pL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin-~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~-----~~d~~g  145 (494)
T PHA02989         72 PLCAVLRNREITSNKIKKIVKLLLKFGADIN-LKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVND-----VKNSRG  145 (494)
T ss_pred             cHHHHHhccCcchhhHHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCccc-----ccCCCC
Confidence            999998764      4789999999999987 7788999999988765   689999999999987522     278899


Q ss_pred             CcHhHHHHhc--CCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcC----CHHHHHHHHHcCChhHHHHHhhhcCCCCC
Q 045083          205 NTPLHEAVRL--RRVDVVKILIKADPHVPYSANRNSETPLYMAVANG----SAEIVAEILQNCPESAARQMLEKTNEEQN  278 (556)
Q Consensus       205 ~t~L~~A~~~--~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g----~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~  278 (556)
                      .||||.|+..  ++.+++++|+++|+++....+..|.||||+|+..+    +.+++++|++.|.+      ++.++..|.
T Consensus       146 ~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~------vn~~~~~~~  219 (494)
T PHA02989        146 YNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVN------IETNNNGSE  219 (494)
T ss_pred             CCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCC------ccccCCccc
Confidence            9999998764  68999999999999974446889999999998764    89999999999975      566777899


Q ss_pred             chhHHHHhc------CCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q 045083          279 TPLHEAVRL------RSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAV  352 (556)
Q Consensus       279 t~Lh~A~~~------g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~  352 (556)
                      ||||.++..      +..+++++|++ +++++ .+|..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+
T Consensus       220 t~l~~~~~~~~~~~~~~~~il~~l~~-~advn-~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~  297 (494)
T PHA02989        220 SVLESFLDNNKILSKKEFKVLNFILK-YIKIN-KKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAI  297 (494)
T ss_pred             cHHHHHHHhchhhcccchHHHHHHHh-CCCCC-CCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            999987764      35678887765 67765 78999999999999999999999999999999999999999999999


Q ss_pred             hcCChhHHHHHHHhhCCCC
Q 045083          353 YTYPTDILERVLIVRGTFK  371 (556)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~  371 (556)
                      ..++.++++.++..+.+.+
T Consensus       298 ~~~~~~iv~~LL~~~p~~~  316 (494)
T PHA02989        298 KHGNIDMLNRILQLKPGKY  316 (494)
T ss_pred             HcCCHHHHHHHHhcCCChH
Confidence            9999999998887665444

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.1e-36  Score=242.96  Aligned_cols=209  Identities=23%  Similarity=0.290  Sum_probs=188.8

Q ss_pred             CCcHhHHHHhcCCHHHHHHHHhcCC-CCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhH
Q 045083          131 QNTPLHEAVRLRSVDVVKILIKADP-HVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLH  209 (556)
Q Consensus       131 g~t~Lh~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~  209 (556)
                      +.++.+.+++.....-++.+++..+ +++...|.+|+||||+||+.|+.+++.+|++......     +.+|..|+||||
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~-----ddkDdaGWtPlh   77 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKP-----DDKDDAGWTPLH   77 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCC-----CCccccCCchhh
Confidence            5677888888888889999999888 6776777799999999999999999999997443322     237999999999


Q ss_pred             HHHhcCCHHHHHHHHhc-CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcC
Q 045083          210 EAVRLRRVDVVKILIKA-DPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLR  288 (556)
Q Consensus       210 ~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g  288 (556)
                      +|+..|+.++++.|+.+ +++ .+..++.|+||||+|+.+|+.++.++|+++++      .++.+|..|.||||.|+.-|
T Consensus        78 ia~s~g~~evVk~Ll~r~~ad-vna~tn~G~T~LHyAagK~r~eIaqlLle~ga------~i~~kD~~~qtplHRAAavG  150 (226)
T KOG4412|consen   78 IAASNGNDEVVKELLNRSGAD-VNATTNGGQTCLHYAAGKGRLEIAQLLLEKGA------LIRIKDKQGQTPLHRAAAVG  150 (226)
T ss_pred             hhhhcCcHHHHHHHhcCCCCC-cceecCCCcceehhhhcCChhhHHHHHHhcCC------CCcccccccCchhHHHHhcc
Confidence            99999999999999999 777 48999999999999999999999999999996      46889999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHh
Q 045083          289 SVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVY  353 (556)
Q Consensus       289 ~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~  353 (556)
                      +.+++++|+..|+.++ .+|+.|+||||.|...|+.++...|+++|++.+..|++| ||+..|.-
T Consensus       151 klkvie~Li~~~a~~n-~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  151 KLKVIEYLISQGAPLN-TQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIACN  213 (226)
T ss_pred             chhhHHHHHhcCCCCC-cccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHHH
Confidence            9999999999998876 789999999999988899999999999999999999999 99887764

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.4e-34  Score=288.98  Aligned_cols=223  Identities=18%  Similarity=0.201  Sum_probs=130.9

Q ss_pred             HHHHHHHhcCCchHHHHhhhhhcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCCC
Q 045083            3 RKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKG   82 (556)
Q Consensus         3 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g   82 (556)
                      .+|+.|++.|+.+++++|++.|++++..+.+|.||||+|+..|+.           +++++|++   . +...+..+..+
T Consensus         4 ~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~-----------~~v~~Ll~---~-ga~~~~~~~~~   68 (413)
T PHA02875          4 VALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDS-----------EAIKLLMK---H-GAIPDVKYPDI   68 (413)
T ss_pred             hHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCH-----------HHHHHHHh---C-CCCccccCCCc
Confidence            467777788888888887777777776666666666666666666           66666633   2 23344445566


Q ss_pred             ChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCccccc
Q 045083           83 DSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSAN  162 (556)
Q Consensus        83 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~  162 (556)
                      .||||+|+..|+.+++++|++.+....               +..+.+|.||||+|+..|+.+++++|++.|++++ ..+
T Consensus        69 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~---------------~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~-~~~  132 (413)
T PHA02875         69 ESELHDAVEEGDVKAVEELLDLGKFAD---------------DVFYKDGMTPLHLATILKKLDIMKLLIARGADPD-IPN  132 (413)
T ss_pred             ccHHHHHHHCCCHHHHHHHHHcCCccc---------------ccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC-CCC
Confidence            666666666666666666666554321               1234456666666666666666666666666654 445


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCC-CCH
Q 045083          163 RNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNS-ETP  241 (556)
Q Consensus       163 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g-~t~  241 (556)
                      ..|.||||+|+..|+.+++++|++++++..      ..+..|.||||.|+..|+.+++++|++.|++. +..+.+| .+|
T Consensus       133 ~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~------~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~-n~~~~~~~~t~  205 (413)
T PHA02875        133 TDKFSPLHLAVMMGDIKGIELLIDHKACLD------IEDCCGCTPLIIAMAKGDIAICKMLLDSGANI-DYFGKNGCVAA  205 (413)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcCCCCC------CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CcCCCCCCchH
Confidence            556666666666666666666665554322      14555555555555555555555555555553 2233332 345


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCh
Q 045083          242 LYMAVANGSAEIVAEILQNCPE  263 (556)
Q Consensus       242 L~~A~~~g~~~~v~~Ll~~~~~  263 (556)
                      +|+|+..|+.+++++|+++|++
T Consensus       206 l~~A~~~~~~~iv~~Ll~~gad  227 (413)
T PHA02875        206 LCYAIENNKIDIVRLFIKRGAD  227 (413)
T ss_pred             HHHHHHcCCHHHHHHHHHCCcC
Confidence            5555555555555555555543

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=1.6e-35  Score=310.61  Aligned_cols=337  Identities=25%  Similarity=0.312  Sum_probs=271.2

Q ss_pred             HHHHHHHhcCCchHHHHhhhhhcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCCC
Q 045083            3 RKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKG   82 (556)
Q Consensus         3 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g   82 (556)
                      +++|.||..+.++.++.++.+|+++...|..|-+|+|.|+..|+.           ++++++++.    +...+..+..|
T Consensus       211 tpl~~a~~~nri~~~eLll~~gadv~a~d~~gl~~lh~a~~~g~~-----------~i~~~l~~~----ga~~~~~~vr~  275 (1143)
T KOG4177|consen  211 TPLHIACKKNRIKVVELLLKHGADVSAKDESGLTPLHVAAFMGHL-----------DIVKLLLQH----GASVNVSTVRG  275 (1143)
T ss_pred             CchhhhccccccceeeeeeeccCcCCcccccCccHHHHHHhccch-----------hHHHHHHhc----ccccCcccccc
Confidence            578899999999999999999999998889999999999999999           889888654    55667788899


Q ss_pred             ChHHHHHHHhCcHHHHHHHHHHhccCCchhhh-----------hhhHHHHH------HHhhhccCCCcHhHHHHhcCCHH
Q 045083           83 DSPLHLAAKKGHTAIVEFLIVFANRQPIDLER-----------GVESAARQ------ILKMTNEEQNTPLHEAVRLRSVD  145 (556)
Q Consensus        83 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~-----------~~~~~~~~------~l~~~~~~g~t~Lh~A~~~g~~~  145 (556)
                      .||+|.||..+..+++++|++.|++.......           +.......      ..+..+..|.+|||.+++.++.+
T Consensus       276 ~tplh~AA~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~  355 (1143)
T KOG4177|consen  276 ETPLHMAARAGQVEVCKLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVE  355 (1143)
T ss_pred             cCcchhhhccchhhhHhhhhccCcccccccccccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHH
Confidence            99999999999999999999988765321111           11111111      14455667888888888888888


Q ss_pred             HHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHh
Q 045083          146 VVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK  225 (556)
Q Consensus       146 ~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  225 (556)
                      +..++.+.++.-. ..+..+.+|+|+|+..|+.++++.++..+.+...      .+..|.||||.|+..++..+++.+++
T Consensus       356 ~~~~l~~~~~~~~-~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~------~gk~gvTplh~aa~~~~~~~v~l~l~  428 (1143)
T KOG4177|consen  356 VAGALLEHGAQRR-QAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNS------AGKNGVTPLHVAAHYGNPRVVKLLLK  428 (1143)
T ss_pred             HHHHhhccccccC-cccccCCcchhhhcccCchhHHHhhhhccCCccc------CCCCCcceeeehhhccCcceEEEEec
Confidence            7777777666654 6677788888888888888888888888866332      78888888888888888888888888


Q ss_pred             cCCCCCccCCCCCCCHHHHHHHcC-CHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcC----
Q 045083          226 ADPHVPYSANRNSETPLYMAVANG-SAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEAD----  300 (556)
Q Consensus       226 ~~~~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~----  300 (556)
                      ++++ .+..+..|.||+|+|+..| +.+....+++.+.+      .+..-..|.||||+|+..|+.+++..|++.+    
T Consensus       429 ~gA~-~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~------~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~  501 (1143)
T KOG4177|consen  429 RGAS-PNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGAD------PNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDN  501 (1143)
T ss_pred             cCCC-hhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCC------cchhccccCcchhhhhccCCchHHHHhhhcCCccC
Confidence            8888 4788888999999999998 78888888887764      4555678888888888888888777776544    


Q ss_pred             -----------------------------CCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q 045083          301 -----------------------------PHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAA  351 (556)
Q Consensus       301 -----------------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A  351 (556)
                                                   .++. .++..|.||||+|+.+|+.++|++||++|++++.+|+.|+||||.|
T Consensus       502 ~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~-~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~A  580 (1143)
T KOG4177|consen  502 LDAKKGLTPLHLAADEDTVKVAKILLEHGANVD-LRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQA  580 (1143)
T ss_pred             ccchhccchhhhhhhhhhHHHHHHHhhcCCcee-hhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHH
Confidence                                         3332 4566889999999999999999999999999999999999999999


Q ss_pred             HhcCChhHHHHHHHhhCC
Q 045083          352 VYTYPTDILERVLIVRGT  369 (556)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~  369 (556)
                      +..|..+++..+++++..
T Consensus       581 a~~G~~~i~~LLlk~GA~  598 (1143)
T KOG4177|consen  581 AQQGHNDIAELLLKHGAS  598 (1143)
T ss_pred             HHcChHHHHHHHHHcCCC
Confidence            999999999998887654

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.7e-33  Score=289.44  Aligned_cols=279  Identities=15%  Similarity=0.188  Sum_probs=201.0

Q ss_pred             chHHHHhhhhhcccccccCCCCeeEEeee--ccccccccccccccccchHHHHHHHHhhCccccccccCCCChHHHHHHH
Q 045083           14 IEPFREIARDELESIVTDVMKNTVLHVNI--MRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKGDSPLHLAAK   91 (556)
Q Consensus        14 ~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~--~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpLh~A~~   91 (556)
                      ++.|+.|++.+ +++.. ..+.|+++.+.  ..++.           +++++|++.    +.+++..|..|.||||.|+.
T Consensus        18 ~~~v~~ll~~~-~~~~~-~~~~~~~~~yl~~~~~~~-----------~iv~~Ll~~----Gadvn~~d~~g~TpL~~~~~   80 (489)
T PHA02798         18 LSTVKLLIKSC-NPNEI-VNEYSIFQKYLQRDSPST-----------DIVKLFINL----GANVNGLDNEYSTPLCTILS   80 (489)
T ss_pred             HHHHHHHHhcC-Chhhh-cccchHHHHHHhCCCCCH-----------HHHHHHHHC----CCCCCCCCCCCCChHHHHHH
Confidence            55788888653 33333 45666655333  33355           778888443    55677778888888888775


Q ss_pred             h-----CcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcC---CHHHHHHHHhcCCCCcccccC
Q 045083           92 K-----GHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLR---SVDVVKILIKADPHVSYSANR  163 (556)
Q Consensus        92 ~-----g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~~~~~~~~~  163 (556)
                      +     ++.+++++|+++|++                ++.+|..|.||||+|+.++   +.+++++|+++|++++ ..|.
T Consensus        81 n~~~~~~~~~iv~~Ll~~Gad----------------iN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn-~~d~  143 (489)
T PHA02798         81 NIKDYKHMLDIVKILIENGAD----------------INKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTT-LLDK  143 (489)
T ss_pred             hHHhHHhHHHHHHHHHHCCCC----------------CCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCcc-ccCC
Confidence            4     667888888888877                4567788888888888765   6788888888888876 6777


Q ss_pred             CCCcHHHHHHHcCC---HHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhc----CCHHHHHHHHhcCCCCCccCCC
Q 045083          164 NSETLLYMAVANGS---AEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRL----RRVDVVKILIKADPHVPYSANR  236 (556)
Q Consensus       164 ~g~t~L~~A~~~g~---~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~~~~~~~~~~~  236 (556)
                      .|.||||+|++.|+   .+++++|++.+.+....     .+..|.||||.++..    ++.+++++|+++|.+. +..+.
T Consensus       144 ~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~-----~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i-~~~~~  217 (489)
T PHA02798        144 DGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTH-----NNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFII-NKENK  217 (489)
T ss_pred             CCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccc-----cCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCc-ccCCc
Confidence            88888888888777   88888888887664332     245677888877654    3678888888888774 56666


Q ss_pred             CCCCHHH-------HHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccC
Q 045083          237 NSETPLY-------MAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANR  309 (556)
Q Consensus       237 ~g~t~L~-------~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~  309 (556)
                      .|.++++       .+...++.++++.|+.. .      .++.+|..|+||||+|+..|+.+++++|++.|++++ .+|.
T Consensus       218 ~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~-~------dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin-~~d~  289 (489)
T PHA02798        218 SHKKKFMEYLNSLLYDNKRFKKNILDFIFSY-I------DINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDIN-IITE  289 (489)
T ss_pred             cccchHHHHHHHHHhhcccchHHHHHHHHhc-C------CCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCccc-ccCC
Confidence            7777765       23445567777776654 2      256777788888888888888888888888888875 6777


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q 045083          310 NSETPLYMAAANGSVKIVAKILQKCPSPAHE  340 (556)
Q Consensus       310 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~  340 (556)
                      .|+||||+|+++++.++++.|++++++++..
T Consensus       290 ~G~TpL~~A~~~~~~~iv~~lL~~~~~~~~i  320 (489)
T PHA02798        290 LGNTCLFTAFENESKFIFNSILNKKPNKNTI  320 (489)
T ss_pred             CCCcHHHHHHHcCcHHHHHHHHccCCCHHHH
Confidence            8888888888888888888888877776543

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-33  Score=228.61  Aligned_cols=206  Identities=20%  Similarity=0.232  Sum_probs=164.9

Q ss_pred             HHHHHHHhcCCchHHHHhhhhhc-cccc-ccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccC
Q 045083            3 RKLYEAAAKGDIEPFREIARDEL-ESIV-TDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANA   80 (556)
Q Consensus         3 ~~L~~A~~~g~~~~v~~Ll~~g~-~~~~-~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   80 (556)
                      ...+.+++.....-++.+++... ..+. .|++|+||||+||..|+.           +++++|   +..-...++.+|.
T Consensus         5 ~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~-----------eiv~fL---lsq~nv~~ddkDd   70 (226)
T KOG4412|consen    5 SLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHV-----------EIVYFL---LSQPNVKPDDKDD   70 (226)
T ss_pred             chHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCch-----------hHHHHH---HhcCCCCCCCccc
Confidence            34566677777777777877654 3333 455899999999999999           999998   4444555677788


Q ss_pred             CCChHHHHHHHhCcHHHHHHHHHH-hccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcc
Q 045083           81 KGDSPLHLAAKKGHTAIVEFLIVF-ANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSY  159 (556)
Q Consensus        81 ~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~  159 (556)
                      .|+||||+||..|+.++|+.|+.+ +++                ++..+..|.||||||+..|..+++++|+++|+.+. 
T Consensus        71 aGWtPlhia~s~g~~evVk~Ll~r~~ad----------------vna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~-  133 (226)
T KOG4412|consen   71 AGWTPLHIAASNGNDEVVKELLNRSGAD----------------VNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIR-  133 (226)
T ss_pred             cCCchhhhhhhcCcHHHHHHHhcCCCCC----------------cceecCCCcceehhhhcCChhhHHHHHHhcCCCCc-
Confidence            899999999999999999999887 555                56788889999999999999999999999887776 


Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCC
Q 045083          160 SANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSE  239 (556)
Q Consensus       160 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~  239 (556)
                      ..|..|+||||.|+..|+.+++++|+..++...      ..|..|+||||.|...|+.+....|++++++. ...|++| 
T Consensus       134 ~kD~~~qtplHRAAavGklkvie~Li~~~a~~n------~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~-~~edke~-  205 (226)
T KOG4412|consen  134 IKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLN------TQDKYGFTPLHHALAEGHPDVAVLLVRAGADT-DREDKEG-  205 (226)
T ss_pred             ccccccCchhHHHHhccchhhHHHHHhcCCCCC------cccccCccHHHHHHhccCchHHHHHHHhccce-eeccccC-
Confidence            888889999999999999999999988885433      27888899999888888888888888888874 6677777 


Q ss_pred             CHHHHHHH
Q 045083          240 TPLYMAVA  247 (556)
Q Consensus       240 t~L~~A~~  247 (556)
                      ||+..|+.
T Consensus       206 t~~~~a~~  213 (226)
T KOG4412|consen  206 TALRIACN  213 (226)
T ss_pred             chHHHHHH
Confidence            88776653

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.4e-32  Score=281.04  Aligned_cols=272  Identities=18%  Similarity=0.246  Sum_probs=228.5

Q ss_pred             chHHHHHHHHhhCccccccccCCCChHHHHHHH--hCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhH
Q 045083           59 ESTEFVEQILDLCPSLLFQANAKGDSPLHLAAK--KGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLH  136 (556)
Q Consensus        59 ~~~~~l~~~~~~~~~~~~~~~~~g~tpLh~A~~--~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh  136 (556)
                      +.++.+++   .+ .. +.. .+|.|+++.+..  .++.++|++|+++|++                ++.+|..|.||||
T Consensus        19 ~~v~~ll~---~~-~~-~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gad----------------vn~~d~~g~TpL~   76 (489)
T PHA02798         19 STVKLLIK---SC-NP-NEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGAN----------------VNGLDNEYSTPLC   76 (489)
T ss_pred             HHHHHHHh---cC-Ch-hhh-cccchHHHHHHhCCCCCHHHHHHHHHCCCC----------------CCCCCCCCCChHH
Confidence            77888843   32 21 222 456787774444  4589999999999998                5668899999999


Q ss_pred             HHHhc-----CCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcC---CHHHHHHHHHhCCChhHHHHhhhcCCCCCcHh
Q 045083          137 EAVRL-----RSVDVVKILIKADPHVSYSANRNSETLLYMAVANG---SAEIVAEILQNCPQSAARQMLEKTNEEQNTPL  208 (556)
Q Consensus       137 ~A~~~-----g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L  208 (556)
                      .|+.+     ++.+++++|+++|++++ ..|..|.||||+|+..+   +.+++++|++++++...      .+..|.|||
T Consensus        77 ~~~~n~~~~~~~~~iv~~Ll~~GadiN-~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~------~d~~g~tpL  149 (489)
T PHA02798         77 TILSNIKDYKHMLDIVKILIENGADIN-KKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTL------LDKDGFTML  149 (489)
T ss_pred             HHHHhHHhHHhHHHHHHHHHHCCCCCC-CCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccc------cCCCCCcHH
Confidence            99865     67899999999999987 78889999999999986   78999999999987543      789999999


Q ss_pred             HHHHhcCC---HHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc----CCHHHHHHHHHcCChhHHHHHhhhcCCCCCchh
Q 045083          209 HEAVRLRR---VDVVKILIKADPHVPYSANRNSETPLYMAVAN----GSAEIVAEILQNCPESAARQMLEKTNEEQNTPL  281 (556)
Q Consensus       209 ~~A~~~~~---~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~----g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L  281 (556)
                      |.|+..++   .+++++|++.|.++....+..|.||||.++..    ++.+++++|+++|.+      ++..+..|.+++
T Consensus       150 ~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~------i~~~~~~~~~~~  223 (489)
T PHA02798        150 QVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFI------INKENKSHKKKF  223 (489)
T ss_pred             HHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCC------cccCCccccchH
Confidence            99999988   99999999999997544467899999998764    489999999999974      456677788887


Q ss_pred             H-------HHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhc
Q 045083          282 H-------EAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYT  354 (556)
Q Consensus       282 h-------~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~  354 (556)
                      +       .+...++.+++++|+. +++++ .+|..|+||||+|+.+|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus       224 ~~~l~~l~~~~~~~~~~i~~~l~~-~~dvN-~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~  301 (489)
T PHA02798        224 MEYLNSLLYDNKRFKKNILDFIFS-YIDIN-QVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFEN  301 (489)
T ss_pred             HHHHHHHHhhcccchHHHHHHHHh-cCCCC-CcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHc
Confidence            6       3455677889988776 57765 7899999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHhh
Q 045083          355 YPTDILERVLIVR  367 (556)
Q Consensus       355 ~~~~~~~~~~~~~  367 (556)
                      ++.++++.++..+
T Consensus       302 ~~~~iv~~lL~~~  314 (489)
T PHA02798        302 ESKFIFNSILNKK  314 (489)
T ss_pred             CcHHHHHHHHccC
Confidence            9999988877544

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.3e-31  Score=263.32  Aligned_cols=302  Identities=14%  Similarity=0.145  Sum_probs=211.9

Q ss_pred             HHHHhcCCchHHHHhhhhhcccccccCCCCeeEEeeec-cccccccccccccccchHHHHHHHHhhCccc----------
Q 045083            6 YEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIM-RSHLTLQTEEGEISSESTEFVEQILDLCPSL----------   74 (556)
Q Consensus         6 ~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~-~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------   74 (556)
                      +.|...|++|+++.|+++|++++.++..+++|+|+|+. .|+.           |++++|++.    +.+          
T Consensus        77 ~~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~-----------eivk~Ll~~----Gad~~~~~~~g~~  141 (631)
T PHA02792         77 YLCSDNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNV-----------DVFKLLLDK----GIPTCSNIQYGYK  141 (631)
T ss_pred             HHHHhcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCCh-----------HHHHHHHHC----CCCcccccccCcc
Confidence            56788999999999999999999998889999999976 6999           999999553    222          


Q ss_pred             --------------------------cccccCCCChHHHHHHHhC-------cHHHHHHHHHHhccCCchhhhhhhHHHH
Q 045083           75 --------------------------LFQANAKGDSPLHLAAKKG-------HTAIVEFLIVFANRQPIDLERGVESAAR  121 (556)
Q Consensus        75 --------------------------~~~~~~~g~tpLh~A~~~g-------~~~iv~~Ll~~~~~~~~~~~~~~~~~~~  121 (556)
                                                ++..+..|.||||+|+.++       +.|+++.|+++|++              
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~--------------  207 (631)
T PHA02792        142 IIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKE--------------  207 (631)
T ss_pred             hhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCC--------------
Confidence                                      2234445666666666666       56666666666655              


Q ss_pred             HHHhhhccCCCcHhHHHHhcC--CHHHHHHHHhcCCCCcccccCCCCcHHHHH--HHc----CC--HHHHHHHHHhCCCh
Q 045083          122 QILKMTNEEQNTPLHEAVRLR--SVDVVKILIKADPHVSYSANRNSETLLYMA--VAN----GS--AEIVAEILQNCPQS  191 (556)
Q Consensus       122 ~~l~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A--~~~----g~--~~~v~~Ll~~~~~~  191 (556)
                        ++..|..|.||||+|+.+.  +.|+++.|++...+..   +  -...|+--  .+.    ++  ..+|..|++.+...
T Consensus       208 --~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~---~--~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~  280 (631)
T PHA02792        208 --MRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGN---E--LMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTF  280 (631)
T ss_pred             --cCccCCCCChHHHHHHHcccchHHHHHHHHhcccccc---c--hHhHHHHHHHHHhccCccCccHHHHHHHHhCCCcc
Confidence              3345556666666666666  5666666665311110   0  11111111  111    11  22555555554321


Q ss_pred             hHHHHhhhc-------------CCCCCcHhHHHHhcC--CHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHH
Q 045083          192 AARQMLEKT-------------NEEQNTPLHEAVRLR--RVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAE  256 (556)
Q Consensus       192 ~~~~~~~~~-------------~~~g~t~L~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~  256 (556)
                      .....+...             +..-+..||.-..++  +.+++++|++.|.+..   ...+..+++.|+..|+.+++++
T Consensus       281 ~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~---r~~~~n~~~~Aa~~gn~eIVel  357 (631)
T PHA02792        281 YILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY---RFKHINKYFQKFDNRDPKVVEY  357 (631)
T ss_pred             chhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc---cCCcchHHHHHHHcCCHHHHHH
Confidence            111101000             111123456556665  6799999999999853   2235667999999999999999


Q ss_pred             HHHcCChhHHHHHhhhcCCC--CCchhHHHHhcCCH---HHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHH
Q 045083          257 ILQNCPESAARQMLEKTNEE--QNTPLHEAVRLRSV---DVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKIL  331 (556)
Q Consensus       257 Ll~~~~~~~~~~~~~~~~~~--g~t~Lh~A~~~g~~---~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  331 (556)
                      |+++|++      ++.+|..  +.||||.|+.....   +++++|+++|++++ .+|..|+||||+|+..++.+++++|+
T Consensus       358 LIs~GAD------IN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN-~kD~~G~TPLh~Aa~~~n~eivelLL  430 (631)
T PHA02792        358 ILKNGNV------VVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDIN-KIDKHGRSILYYCIESHSVSLVEWLI  430 (631)
T ss_pred             HHHcCCc------hhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccc-cccccCcchHHHHHHcCCHHHHHHHH
Confidence            9999985      4556655  46999998877664   46899999999986 78999999999999999999999999


Q ss_pred             hcCCCCCCCCCCCCcHHHHHHh
Q 045083          332 QKCPSPAHEGPDGKTALHAAVY  353 (556)
Q Consensus       332 ~~~~~~~~~d~~g~t~L~~A~~  353 (556)
                      ++|++++.+|..|+||||+|+.
T Consensus       431 s~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        431 DNGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             HCCCCCCCcCCCCCCHHHHHHH
Confidence            9999999999999999999986

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=3e-31  Score=246.20  Aligned_cols=198  Identities=25%  Similarity=0.336  Sum_probs=171.1

Q ss_pred             ccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCC
Q 045083           78 ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHV  157 (556)
Q Consensus        78 ~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~  157 (556)
                      ...+|.|||-+||++||.++|++|+++....+...-...       .+-..-+|-+||..|...||.++|+.|+++++++
T Consensus        38 ~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~-------FDge~IegappLWaAsaAGHl~vVk~L~~~ga~V  110 (615)
T KOG0508|consen   38 EVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVR-------FDGETIEGAPPLWAASAAGHLEVVKLLLRRGASV  110 (615)
T ss_pred             cccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEE-------eCCcccCCCchhhHHhccCcHHHHHHHHHhcCcc
Confidence            456788999999999999999999996543321100000       1123457899999999999999999999999888


Q ss_pred             cccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCC
Q 045083          158 SYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRN  237 (556)
Q Consensus       158 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~  237 (556)
                      + .......|||-.||.-|+.|+|++|+++++++..      .+..|.|.||+|+..|+.+++++|++.++++ +.++..
T Consensus       111 N-~tT~TNStPLraACfDG~leivKyLvE~gad~~I------anrhGhTcLmIa~ykGh~~I~qyLle~gADv-n~ks~k  182 (615)
T KOG0508|consen  111 N-DTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEI------ANRHGHTCLMIACYKGHVDIAQYLLEQGADV-NAKSYK  182 (615)
T ss_pred             c-cccccCCccHHHHHhcchhHHHHHHHHcCCCCcc------cccCCCeeEEeeeccCchHHHHHHHHhCCCc-chhccc
Confidence            7 5666778999999999999999999999988654      7999999999999999999999999999996 899999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHH
Q 045083          238 SETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILI  297 (556)
Q Consensus       238 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll  297 (556)
                      |.|+||.|++.|+.++++.|++++..       -.+|..|.|||..|+..|+.++|+.|+
T Consensus       183 GNTALH~caEsG~vdivq~Ll~~ga~-------i~~d~~GmtPL~~Aa~tG~~~iVe~L~  235 (615)
T KOG0508|consen  183 GNTALHDCAESGSVDIVQLLLKHGAK-------IDVDGHGMTPLLLAAVTGHTDIVERLL  235 (615)
T ss_pred             CchHHHhhhhcccHHHHHHHHhCCce-------eeecCCCCchHHHHhhhcchHHHHHHh
Confidence            99999999999999999999999974       256788999999999999999888887

>PHA02792 ankyrin-like protein; Provisional

Probab=99.97  E-value=2.8e-29  Score=251.56  Aligned_cols=321  Identities=12%  Similarity=0.121  Sum_probs=221.6

Q ss_pred             CHHHHHHHhcCCchH--HHHhhhhhcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCcccccccc
Q 045083            2 DRKLYEAAAKGDIEP--FREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQAN   79 (556)
Q Consensus         2 ~~~L~~A~~~g~~~~--v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   79 (556)
                      |+-|+..|+.=+++.  .+.|++.|+++... .+|.||||.-..+.+..          .-.+.++.+    ....+..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~-~~~~t~~~~~~~~~~~~----------~~~~~~~~~----~~~~~~~n   68 (631)
T PHA02792          4 DKILYDSCKTFNIDACSAQSLIESGANPLYE-YDGETPLKAYVTKKNNN----------IKNDVVILL----LSSVDYKN   68 (631)
T ss_pred             hhHHHhHhhccchhHHHHHHHHHcCCCcccc-cCCCccHHHHHhhhhhh----------HHHHHHHHH----HhCCCcCc
Confidence            456777888776655  46699999999774 88889999987776640          223344333    23345778


Q ss_pred             CCCChHHHH-HHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHh-cCCHHHHHHHHhcCCCC
Q 045083           80 AKGDSPLHL-AAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVR-LRSVDVVKILIKADPHV  157 (556)
Q Consensus        80 ~~g~tpLh~-A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~-~g~~~~v~~Ll~~~~~~  157 (556)
                      .+|.+|+|+ |..+|+.|+|++|+++|++                ++.++..|.+|+|+|+. .++.|++++|+++|++.
T Consensus        69 ~~~~~~~~~~~s~n~~lElvk~LI~~GAd----------------vN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~  132 (631)
T PHA02792         69 INDFDIFEYLCSDNIDIELLKLLISKGLE----------------INSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPT  132 (631)
T ss_pred             cCCccHHHHHHHhcccHHHHHHHHHcCCC----------------cccccCCCCcceeEeecCCCChHHHHHHHHCCCCc
Confidence            899999987 6678999999999999998                55677889999999966 69999999999999874


Q ss_pred             cc-----------------------------------cccCCCCcHHHHHHHcC-------CHHHHHHHHHhCCChhHHH
Q 045083          158 SY-----------------------------------SANRNSETLLYMAVANG-------SAEIVAEILQNCPQSAARQ  195 (556)
Q Consensus       158 ~~-----------------------------------~~~~~g~t~L~~A~~~g-------~~~~v~~Ll~~~~~~~~~~  195 (556)
                      ..                                   ..|..|.||||+|+.++       +.|+++.|++++++...  
T Consensus       133 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~--  210 (631)
T PHA02792        133 CSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRY--  210 (631)
T ss_pred             ccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCc--
Confidence            20                                   12334666666666666       56666666666655433  


Q ss_pred             HhhhcCCCCCcHhHHHHhcC--CHHHHHHHHhcCCCCCccC------------CC-------------CCCCH-------
Q 045083          196 MLEKTNEEQNTPLHEAVRLR--RVDVVKILIKADPHVPYSA------------NR-------------NSETP-------  241 (556)
Q Consensus       196 ~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~~~~~~~~~------------~~-------------~g~t~-------  241 (556)
                          .+..|.||||+|+.+.  +.|+++.|++..-+....+            ..             .|.+|       
T Consensus       211 ----~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~  286 (631)
T PHA02792        211 ----YTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELC  286 (631)
T ss_pred             ----cCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhh
Confidence                4556666666666666  5666666665321110000            00             01110       


Q ss_pred             -----------------------HHHHHHcC--CHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHH
Q 045083          242 -----------------------LYMAVANG--SAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKIL  296 (556)
Q Consensus       242 -----------------------L~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~L  296 (556)
                                             ||.=..++  +.++++.|++.|.+.        .......+++.|+..|+.+++++|
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~--------~r~~~~n~~~~Aa~~gn~eIVelL  358 (631)
T PHA02792        287 NSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATL--------YRFKHINKYFQKFDNRDPKVVEYI  358 (631)
T ss_pred             hhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCcc--------ccCCcchHHHHHHHcCCHHHHHHH
Confidence                                   00001111  233444444444321        012355678999999999999999


Q ss_pred             HhcCCCCCccccCC--CCCHHHHHHHcCCHH---HHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHHHHHHhhC
Q 045083          297 IEADPHVPYSANRN--SETPLYMAAANGSVK---IVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRG  368 (556)
Q Consensus       297 l~~~~~~~~~~~~~--g~t~L~~A~~~~~~~---~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~~~~~~~  368 (556)
                      +++|++++ .+|.+  +.||||+|......+   ++++|+.+|+++|.+|..|+||||+|+..++.++++.++..+.
T Consensus       359 Is~GADIN-~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GA  434 (631)
T PHA02792        359 LKNGNVVV-EDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGA  434 (631)
T ss_pred             HHcCCchh-hhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCC
Confidence            99999986 56655  469999988777654   5788899999999999999999999999999999988876644

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=1.1e-29  Score=246.54  Aligned_cols=213  Identities=22%  Similarity=0.291  Sum_probs=193.0

Q ss_pred             cCCCcHhHHHHhcCCHHHHHHHHhc-CCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcH
Q 045083          129 EEQNTPLHEAVRLRSVDVVKILIKA-DPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTP  207 (556)
Q Consensus       129 ~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~  207 (556)
                      ....+.++.|+..|..+.++.|++. +.+++ ..|++|.++||+|+.+++.+++++|++++++....     -..-+.||
T Consensus        42 d~~~~~~v~A~q~G~l~~v~~lve~~g~~v~-~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~-----gG~l~stP  115 (600)
T KOG0509|consen   42 DSSLDDIVKATQYGELETVKELVESEGESVN-NPDREGVTLLHWAAINNRLDVARYLISHGADVNAI-----GGVLGSTP  115 (600)
T ss_pred             chhhhhhhhHhhcchHHHHHHHHhhcCcCCC-CCCcCCccceeHHHHcCcHHHHHHHHHcCCCcccc-----CCCCCCCc
Confidence            3345667899999999999999998 66666 88899999999999999999999999999886543     34778999


Q ss_pred             hHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhc
Q 045083          208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRL  287 (556)
Q Consensus       208 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~  287 (556)
                      ||.|+++|+..+++.|+++|++ +..+|.+|.+|+|.|++.|+.-++-+++.++.      +++.+|.+|+||||+|+.+
T Consensus       116 LHWAar~G~~~vv~lLlqhGAd-pt~~D~~G~~~lHla~~~~~~~~vayll~~~~------d~d~~D~~grTpLmwAayk  188 (600)
T KOG0509|consen  116 LHWAARNGHISVVDLLLQHGAD-PTLKDKQGLTPLHLAAQFGHTALVAYLLSKGA------DIDLRDNNGRTPLMWAAYK  188 (600)
T ss_pred             chHHHHcCcHHHHHHHHHcCCC-CceecCCCCcHHHHHHHhCchHHHHHHHHhcc------cCCCcCCCCCCHHHHHHHh
Confidence            9999999999999999999999 58999999999999999999999999999996      3678999999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhc
Q 045083          288 RSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYT  354 (556)
Q Consensus       288 g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~  354 (556)
                      |....++.|++.++.+....|..|+||||+|+..|+.+++..+++.|++.+..|.+|+||+++|...
T Consensus       189 g~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  189 GFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            9998899999999999866669999999999999999999965556678999999999999999865

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=2.1e-29  Score=244.41  Aligned_cols=209  Identities=26%  Similarity=0.290  Sum_probs=187.3

Q ss_pred             ChHHHHHHHhCcHHHHHHHHHH-hccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccc
Q 045083           83 DSPLHLAAKKGHTAIVEFLIVF-ANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSA  161 (556)
Q Consensus        83 ~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  161 (556)
                      ..-++.|++.|..+-|+.|++. +.+                ++..|++|-|+||+|+.+++.+++++|+++|++++...
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~----------------v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~g  108 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGES----------------VNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIG  108 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcC----------------CCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccC
Confidence            4678899999999999999998 555                45578899999999999999999999999999999666


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCH
Q 045083          162 NRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETP  241 (556)
Q Consensus       162 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~  241 (556)
                      ..-+.||||+|+++|+..+|..|+++|+++..      +|.+|.+|||.|++.|+.-++-+++.++.+ .+.+|.+|+||
T Consensus       109 G~l~stPLHWAar~G~~~vv~lLlqhGAdpt~------~D~~G~~~lHla~~~~~~~~vayll~~~~d-~d~~D~~grTp  181 (600)
T KOG0509|consen  109 GVLGSTPLHWAARNGHISVVDLLLQHGADPTL------KDKQGLTPLHLAAQFGHTALVAYLLSKGAD-IDLRDNNGRTP  181 (600)
T ss_pred             CCCCCCcchHHHHcCcHHHHHHHHHcCCCCce------ecCCCCcHHHHHHHhCchHHHHHHHHhccc-CCCcCCCCCCH
Confidence            68899999999999999999999999998765      799999999999999999999999999977 58999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcC-CCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHH
Q 045083          242 LYMAVANGSAEIVAEILQNCPESAARQMLEKTN-EEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAA  320 (556)
Q Consensus       242 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  320 (556)
                      ||+|+.+|+...++.|++.++.      +..+| ..|+||||+|+..|+.++++.+++.|.+. ..+|.+|.||+.+|.+
T Consensus       182 LmwAaykg~~~~v~~LL~f~a~------~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~-d~~~~~g~tp~~LA~~  254 (600)
T KOG0509|consen  182 LMWAAYKGFALFVRRLLKFGAS------LLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADL-DKTNTNGKTPFDLAQE  254 (600)
T ss_pred             HHHHHHhcccHHHHHHHHhccc------ccccccccCCchHHHHHhcCCcceEehhhhcCCcc-cccccCCCCHHHHHHH
Confidence            9999999998889999999874      34444 89999999999999999999444544554 5889999999999987


Q ss_pred             c
Q 045083          321 N  321 (556)
Q Consensus       321 ~  321 (556)
                      .
T Consensus       255 ~  255 (600)
T KOG0509|consen  255 R  255 (600)
T ss_pred             h
Confidence            7

>PF13962 PGG: Domain of unknown function

Probab=99.95  E-value=4e-28  Score=194.48  Aligned_cols=111  Identities=40%  Similarity=0.642  Sum_probs=97.6

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHhcccCCCCcCCCCCCCCcccccccCc-ccchhhhcchHHHHHHHHHHHHHhhcccc
Q 045083          403 EEALKEMQSLHTVVAALIATVTFAAGFTLPGGYWGKEGPIPGTPILIKNA-GFRAFVVSDVIAMVLSVSAIFIYFLTPAK  481 (556)
Q Consensus       403 ~~~~~~~~~s~~vvA~Liatv~faa~~t~Pgg~~~~~~~~~G~~~~~~~~-~f~~F~~~~~~a~~~S~~~~~~~~~~~~~  481 (556)
                      +||++++++++++||+|||||||||++|||||+||+++ +.|+|++.+++ .|++|+++|++||++|++++++++. ...
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~-~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~-~~~   78 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDD-DAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLIS-GLD   78 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccc-CCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence            48999999999999999999999999999999999875 78999999888 9999999999999999999999883 332


Q ss_pred             h-hhHHHHHhhhhHHHHHHHHHHHHHHHHHhccee
Q 045083          482 T-LRQTKFLSDMPHNFIMVSLLAMVVAFITGTYAV  515 (556)
Q Consensus       482 ~-~~~~~~~~~~~~~~~~~s~~~m~~af~~~~~~v  515 (556)
                      + .+.....+.+...++++++.+|++||++|+|+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   79 DFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            2 223445666778899999999999999999876

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1.7e-26  Score=208.61  Aligned_cols=174  Identities=16%  Similarity=0.200  Sum_probs=139.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcC--CHHHHHHHHhcCCCCCccCC-CCCCC
Q 045083          164 NSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLR--RVDVVKILIKADPHVPYSAN-RNSET  240 (556)
Q Consensus       164 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~~~~~~~~~~-~~g~t  240 (556)
                      .+.+||+.|+..|+.++|+.|++..         +..+..|.||||.|+..+  +.+++++|+++++++ +.++ .+|.|
T Consensus        20 ~~~~pL~~A~~~~~~~~vk~Li~~~---------n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~T   89 (209)
T PHA02859         20 RYCNPLFYYVEKDDIEGVKKWIKFV---------NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNNLS   89 (209)
T ss_pred             ccCcHHHHHHHhCcHHHHHHHHHhh---------hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCCCC
Confidence            4567777777777777777776542         125777888888887744  788888888888886 4444 57889


Q ss_pred             HHHHHHHc---CCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHh--cCCHHHHHHHHhcCCCCCccccCCCCCHH
Q 045083          241 PLYMAVAN---GSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVR--LRSVDVAKILIEADPHVPYSANRNSETPL  315 (556)
Q Consensus       241 ~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L  315 (556)
                      |||+|+..   ++.+++++|++++.+      ++.+|..|.||||.|+.  .++.+++++|++.|++++ .+|..|.|||
T Consensus        90 pLh~a~~~~~~~~~eiv~~Ll~~gad------in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin-~~d~~g~t~L  162 (209)
T PHA02859         90 ALHHYLSFNKNVEPEILKILIDSGSS------ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFL-NKDFDNNNIL  162 (209)
T ss_pred             HHHHHHHhCccccHHHHHHHHHCCCC------CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcc-cccCCCCcHH
Confidence            99987753   478999999988874      57788899999998876  468999999999999986 6789999999


Q ss_pred             HH-HHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhc
Q 045083          316 YM-AAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYT  354 (556)
Q Consensus       316 ~~-A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~  354 (556)
                      |. |+..++.+++++|++.|++++.+|..|+||||+|...
T Consensus       163 h~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        163 YSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFR  202 (209)
T ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhh
Confidence            95 5667889999999999999999999999999999864

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.95  E-value=2.5e-28  Score=246.50  Aligned_cols=321  Identities=19%  Similarity=0.223  Sum_probs=285.7

Q ss_pred             CCHHHHHHHhcCCchHHHHhhhhhcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccC
Q 045083            1 MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANA   80 (556)
Q Consensus         1 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   80 (556)
                      ++..|..||..|+.|.+..|+.+|+++..+|+.|.+||.+|+..||.           .+++.|   +....+.-...|.
T Consensus       757 ~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~-----------tvV~~l---lk~ha~veaQsdr  822 (2131)
T KOG4369|consen  757 IKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHI-----------TVVQDL---LKAHADVEAQSDR  822 (2131)
T ss_pred             ccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCch-----------HHHHHH---Hhhhhhhhhhccc
Confidence            46789999999999999999999999999999999999999999999           999999   5555566667899


Q ss_pred             CCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCccc
Q 045083           81 KGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYS  160 (556)
Q Consensus        81 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~  160 (556)
                      .++|+|-+||..|+.++|+.||..|+..                ..++-...|||.+|...|..++++.|+..|.+++..
T Consensus       823 tkdt~lSlacsggr~~vvelLl~~gank----------------ehrnvsDytPlsla~Sggy~~iI~~llS~GseInSr  886 (2131)
T KOG4369|consen  823 TKDTMLSLACSGGRTRVVELLLNAGANK----------------EHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSR  886 (2131)
T ss_pred             ccCceEEEecCCCcchHHHHHHHhhccc----------------cccchhhcCchhhhcCcchHHHHHHHhhcccccccc
Confidence            9999999999999999999999999863                346777899999999999999999999999988754


Q ss_pred             c-cCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCC
Q 045083          161 A-NRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSE  239 (556)
Q Consensus       161 ~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~  239 (556)
                      . .+-|.+||.+|..+|+.+.++.|++.+.+....     ...+.+|+|-.|+..|+.+++..|+....+. ..+-+.|.
T Consensus       887 tgSklgisPLmlatmngh~~at~~ll~~gsdiNaq-----IeTNrnTaltla~fqgr~evv~lLLa~~anv-ehRaktgl  960 (2131)
T KOG4369|consen  887 TGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQ-----IETNRNTALTLALFQGRPEVVFLLLAAQANV-EHRAKTGL  960 (2131)
T ss_pred             cccccCcchhhhhhhccccHHHHHHhcccchhccc-----cccccccceeeccccCcchHHHHHHHHhhhh-hhhcccCC
Confidence            3 456899999999999999999999998665443     5667889999999999999999999998885 67788999


Q ss_pred             CHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHH
Q 045083          240 TPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAA  319 (556)
Q Consensus       240 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~  319 (556)
                      |||+-++.-|+.|+=+.|+..|++...    ...-....|+|-+++..|+...++.|+...+.+. .+|++|+|+|.+|+
T Consensus       961 tplme~AsgGyvdvg~~li~~gad~na----sPvp~T~dtalti~a~kGh~kfv~~lln~~atv~-v~NkkG~T~Lwla~ 1035 (2131)
T KOG4369|consen  961 TPLMEMASGGYVDVGNLLIAAGADTNA----SPVPNTWDTALTIPANKGHTKFVPKLLNGDATVR-VPNKKGCTVLWLAS 1035 (2131)
T ss_pred             cccchhhcCCccccchhhhhccccccc----CCCCCcCCccceeecCCCchhhhHHhhCCcccee-cccCCCCcccchhc
Confidence            999999999999999999999986542    2334556789999999999999999998877764 78999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHHH
Q 045083          320 ANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILER  362 (556)
Q Consensus       320 ~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~  362 (556)
                      .-|....+..|++++++++..|+..+++++-|...++.+++++
T Consensus      1036 ~Gg~lss~~il~~~~ad~d~qdnr~~S~~maafRKgh~~iVk~ 1078 (2131)
T KOG4369|consen 1036 AGGALSSCPILVSSVADADQQDNRTNSRTMAAFRKGHFAIVKK 1078 (2131)
T ss_pred             cCCccccchHHhhcccChhhhhcccccccHHHHHhchhheecc
Confidence            9999999999999999999999999999999999988877643

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=5.8e-26  Score=219.85  Aligned_cols=247  Identities=14%  Similarity=0.095  Sum_probs=181.7

Q ss_pred             chHHHHHHHHhhCccccccccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHH
Q 045083           59 ESTEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEA  138 (556)
Q Consensus        59 ~~~~~l~~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A  138 (556)
                      +-+..+.+++...+..++....+|     +|+..+..|++++|+++|+..+.         ...++ .++..++|+||++
T Consensus        59 ~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~---------~~~~~-~~~~~~~~~L~~~  123 (437)
T PHA02795         59 DPVDVLYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDI---------FSIII-KNCNSVQDLLLYY  123 (437)
T ss_pred             CHHHHHHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccch---------hhhhh-hccccccHHHHHH
Confidence            445666665556666677666666     99999999999999999987431         11112 3677899999999


Q ss_pred             Hh--cCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCC
Q 045083          139 VR--LRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRR  216 (556)
Q Consensus       139 ~~--~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~  216 (556)
                      +.  .|+.+++++|+++|++++.   ..+.||+|.|+..|+.+++++|++++.........+..+..+.+++|.|...++
T Consensus       124 ~~n~~n~~eiV~~LI~~GADIn~---~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~  200 (437)
T PHA02795        124 LSNAYVEIDIVDFMVDHGAVIYK---IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTV  200 (437)
T ss_pred             HHhcCCCHHHHHHHHHCCCCCCC---CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCH
Confidence            99  8999999999999999973   345899999999999999999999986432211111122446788888888888


Q ss_pred             HHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCC-------
Q 045083          217 VDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRS-------  289 (556)
Q Consensus       217 ~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~-------  289 (556)
                      .+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|+++|++      ++.+|..|+||||+|+..|+       
T Consensus       201 ~eIve~LIs~GADI-N~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAd------IN~~d~~G~TpLh~Aa~~g~~~~~~~~  273 (437)
T PHA02795        201 LEIYKLCIPYIEDI-NQLDAGGRTLLYRAIYAGYIDLVSWLLENGAN------VNAVMSNGYTCLDVAVDRGSVIARRET  273 (437)
T ss_pred             HHHHHHHHhCcCCc-CcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC------CCCcCCCCCCHHHHHHHcCCccccccc
Confidence            88888888888875 67788888888888888888888888888874      56777888888888888774       


Q ss_pred             -HHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 045083          290 -VDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPS  336 (556)
Q Consensus       290 -~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~  336 (556)
                       .++++.|+++|+++..    .+.+++..  ...+.++++.++.+...
T Consensus       274 ~~eIvelLL~~gadI~~----~~~~~~~~--~~~n~~~ik~lI~y~~~  315 (437)
T PHA02795        274 HLKILEILLREPLSIDC----IKLAILNN--TIENHDVIKLCIKYFMM  315 (437)
T ss_pred             HHHHHHHHHhCCCCCCc----hhHHhhhc--ccchHHHHHHHHHHHHh
Confidence             5788888888877642    12222221  11256677776665443

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=2.5e-25  Score=201.01  Aligned_cols=181  Identities=15%  Similarity=0.198  Sum_probs=108.6

Q ss_pred             cCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcC--CHHHHHHHHhcCCC
Q 045083           79 NAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLR--SVDVVKILIKADPH  156 (556)
Q Consensus        79 ~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~  156 (556)
                      ...+.||||+|+..|+.+.|+.|++..                   +..|..|.||||+|+.++  +.+++++|+++|++
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~~-------------------n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gad   78 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKFV-------------------NDCNDLYETPIFSCLEKDKVNVEILKFLIENGAD   78 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHhh-------------------hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCC
Confidence            345567777777777777777776532                   234666777777777643  67777777777777


Q ss_pred             CcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCC
Q 045083          157 VSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANR  236 (556)
Q Consensus       157 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~  236 (556)
                      ++...+..|.||||+|+..+                                    ..++.+++++|+++++++ +.+|.
T Consensus        79 vn~~~~~~g~TpLh~a~~~~------------------------------------~~~~~eiv~~Ll~~gadi-n~~d~  121 (209)
T PHA02859         79 VNFKTRDNNLSALHHYLSFN------------------------------------KNVEPEILKILIDSGSSI-TEEDE  121 (209)
T ss_pred             CCccCCCCCCCHHHHHHHhC------------------------------------ccccHHHHHHHHHCCCCC-CCcCC
Confidence            66332345666666554321                                    012345555555555553 45555


Q ss_pred             CCCCHHHHHHH--cCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHH-HHhcCCHHHHHHHHhcCCCCCccccCCCCC
Q 045083          237 NSETPLYMAVA--NGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHE-AVRLRSVDVAKILIEADPHVPYSANRNSET  313 (556)
Q Consensus       237 ~g~t~L~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t  313 (556)
                      +|.||||+|+.  .++.+++++|++.+.+      ++.+|..|.||||. |+..++.+++++|+++|++++ .+|..|+|
T Consensus       122 ~G~TpLh~a~~~~~~~~~iv~~Li~~gad------in~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~-~~d~~g~t  194 (209)
T PHA02859        122 DGKNLLHMYMCNFNVRINVIKLLIDSGVS------FLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDIN-ETNKSGYN  194 (209)
T ss_pred             CCCCHHHHHHHhccCCHHHHHHHHHcCCC------cccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCC-CCCCCCCC
Confidence            56666665544  2456666666666653      34556667777764 445566777777777777664 56667777


Q ss_pred             HHHHHHHcC
Q 045083          314 PLYMAAANG  322 (556)
Q Consensus       314 ~L~~A~~~~  322 (556)
                      |||+|..++
T Consensus       195 pl~la~~~~  203 (209)
T PHA02859        195 CYDLIKFRN  203 (209)
T ss_pred             HHHHHhhhh
Confidence            777776543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=3e-25  Score=214.92  Aligned_cols=208  Identities=14%  Similarity=0.125  Sum_probs=166.7

Q ss_pred             HHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCc-----ccccCCCCcHHHHH
Q 045083           98 VEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVS-----YSANRNSETLLYMA  172 (556)
Q Consensus        98 v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-----~~~~~~g~t~L~~A  172 (556)
                      -++++.+|.+                ++.++.+|     +|+..+..|++++|+.+|.+++     ...+..++|+||.+
T Consensus        65 ~~~~~~~~~~----------------i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~  123 (437)
T PHA02795         65 YDYFRIHRDN----------------IDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYY  123 (437)
T ss_pred             HHHHHHcCcc----------------hhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHH
Confidence            4677777765                33344444     8888899999999999998865     13667789999999


Q ss_pred             HH--cCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCC-----CCCCCHHHHH
Q 045083          173 VA--NGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSAN-----RNSETPLYMA  245 (556)
Q Consensus       173 ~~--~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-----~~g~t~L~~A  245 (556)
                      +.  .|+.+++++|+++|++..        ..++.||+|.|+..++.+++++|+++|.+..+..+     ..+.+++|.|
T Consensus       124 ~~n~~n~~eiV~~LI~~GADIn--------~~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a  195 (437)
T PHA02795        124 LSNAYVEIDIVDFMVDHGAVIY--------KIECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLV  195 (437)
T ss_pred             HHhcCCCHHHHHHHHHCCCCCC--------CCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHH
Confidence            98  889999999999997752        13557899999999999999999999875333321     3477888999


Q ss_pred             HHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCC--
Q 045083          246 VANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGS--  323 (556)
Q Consensus       246 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~--  323 (556)
                      +..++.++++.|++++++      ++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+.+|+  
T Consensus       196 ~~~~~~eIve~LIs~GAD------IN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN-~~d~~G~TpLh~Aa~~g~~~  268 (437)
T PHA02795        196 DEPTVLEIYKLCIPYIED------INQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVN-AVMSNGYTCLDVAVDRGSVI  268 (437)
T ss_pred             HhcCHHHHHHHHHhCcCC------cCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCCcc
Confidence            999999999999998874      67788889999999999999999999999999886 778889999999998884  


Q ss_pred             ------HHHHHHHHhcCCCCCCCC
Q 045083          324 ------VKIVAKILQKCPSPAHEG  341 (556)
Q Consensus       324 ------~~~v~~Ll~~~~~~~~~d  341 (556)
                            .++++.|+++|++++..+
T Consensus       269 ~~~~~~~eIvelLL~~gadI~~~~  292 (437)
T PHA02795        269 ARRETHLKILEILLREPLSIDCIK  292 (437)
T ss_pred             cccccHHHHHHHHHhCCCCCCchh
Confidence                  589999888888877644

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.93  E-value=2.1e-25  Score=219.17  Aligned_cols=261  Identities=23%  Similarity=0.281  Sum_probs=167.5

Q ss_pred             CCHHHHHHHhcCCchHHHHhhhhhcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccC
Q 045083            1 MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANA   80 (556)
Q Consensus         1 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   80 (556)
                      |+..+..|++.||++.+..|++..-        +..++-.+-                           ..+...+..|.
T Consensus         3 k~qel~~a~ka~d~~tva~ll~~~~--------~r~~~l~~~---------------------------trsds~n~qd~   47 (854)
T KOG0507|consen    3 KKQELIDACKAGDYDTVALLLSSKK--------GRSGLLFFT---------------------------TRSDSHNLQDY   47 (854)
T ss_pred             hhhhHHHhhhcccHHHHHHhccCCC--------CCCCCCCCC---------------------------CCCccccccCc
Confidence            4678999999999999999998621        111111111                           11222344555


Q ss_pred             CCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCccc
Q 045083           81 KGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYS  160 (556)
Q Consensus        81 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~  160 (556)
                      +|.|+||.||.+|+.++++.|++..+-                ++..|..|.+|||+|+.+|+.++++.++.++...+ .
T Consensus        48 ~gfTalhha~Lng~~~is~llle~ea~----------------ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~n-a  110 (854)
T KOG0507|consen   48 SGFTLLHHAVLNGQNQISKLLLDYEAL----------------LDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILN-A  110 (854)
T ss_pred             cchhHHHHHHhcCchHHHHHHhcchhh----------------hhhhhccCcceEEehhhcCcchHHHHHHhcccCCC-c
Confidence            777777888777777777777765443                55566777777888877788777777777774444 6


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCC
Q 045083          161 ANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSET  240 (556)
Q Consensus       161 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t  240 (556)
                      .+..|.+|||.|++.|+.|++.+|++++.++..      ++..+.|+|..|++.|..++++.|+...-...  .      
T Consensus       111 ~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i------~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~--~------  176 (854)
T KOG0507|consen  111 VNIENETPLHLAAQHGHLEVVFYLLKKNADPFI------RNNSKETVLDLASRFGRAEVVQMLLQKKFPVQ--S------  176 (854)
T ss_pred             ccccCcCccchhhhhcchHHHHHHHhcCCCccc------cCcccccHHHHHHHhhhhHHHHHHhhhccchh--h------
Confidence            667777777777777777777777777766654      57777777777777777777777776521110  0      


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHH
Q 045083          241 PLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAA  320 (556)
Q Consensus       241 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  320 (556)
                                      +...+ .       ..++..+.+|+|.|+++|+.++++.|++.|.+++..  ....|+||.|+.
T Consensus       177 ----------------~~~~~-~-------~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~--t~~gtalheaal  230 (854)
T KOG0507|consen  177 ----------------SLRVG-D-------IKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYT--TEDGTALHEAAL  230 (854)
T ss_pred             ----------------cccCC-C-------CCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccc--cccchhhhhHhh
Confidence                            00111 0       123345566666666666666666666666666522  234566666666


Q ss_pred             cCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHh
Q 045083          321 NGSVKIVAKILQKCPSPAHEGPDGKTALHAAVY  353 (556)
Q Consensus       321 ~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~  353 (556)
                      .|..++|..|++.|...+.+|.+|+|+|++-..
T Consensus       231 cgk~evvr~ll~~gin~h~~n~~~qtaldil~d  263 (854)
T KOG0507|consen  231 CGKAEVVRFLLEIGINTHIKNQHGQTALDIIID  263 (854)
T ss_pred             cCcchhhhHHHhhccccccccccchHHHHHHHh
Confidence            666666666666666666666666666665544

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.91  E-value=4.5e-24  Score=230.81  Aligned_cols=248  Identities=20%  Similarity=0.199  Sum_probs=183.4

Q ss_pred             CCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhH-HHHhcCCHHHHHHHHhcCCCCc
Q 045083           80 AKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLH-EAVRLRSVDVVKILIKADPHVS  158 (556)
Q Consensus        80 ~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh-~A~~~g~~~~v~~Ll~~~~~~~  158 (556)
                      ..++.+++.|++.|+.+.|+.+++.+...+              ++..|..|+|||| .|+.+++.++++.|++.+.   
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~--------------in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~---   77 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLN--------------INCPDRLGRSALFVAAIENENLELTELLLNLSC---   77 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccC--------------CCCcCccchhHHHHHHHhcChHHHHHHHHhCCC---
Confidence            356789999999999999999998733211              4567899999999 9999999999999999876   


Q ss_pred             ccccCCCCcHHHHHHHcCCHHHH----HHHHHhCCChh----HHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCC
Q 045083          159 YSANRNSETLLYMAVANGSAEIV----AEILQNCPQSA----ARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHV  230 (556)
Q Consensus       159 ~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~~~~~~----~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~  230 (556)
                        .+..|.||||.|+.. ..+.+    ..+....+...    ...........|.||||.|+.+|+.++++.|+++|+++
T Consensus        78 --~~~~G~T~Lh~A~~~-~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv  154 (743)
T TIGR00870        78 --RGAVGDTLLHAISLE-YVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASV  154 (743)
T ss_pred             --CCCcChHHHHHHHhc-cHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCC
Confidence              567899999999873 33333    33333322110    00000112356999999999999999999999999886


Q ss_pred             CccC-------------CCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcC---------
Q 045083          231 PYSA-------------NRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLR---------  288 (556)
Q Consensus       231 ~~~~-------------~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g---------  288 (556)
                      ....             ...|++|||.|+..|+.++++.|++++++      ++.+|..|+||||+|+..+         
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad------in~~d~~g~T~Lh~A~~~~~~~~~~~~l  228 (743)
T TIGR00870       155 PARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPAD------ILTADSLGNTLLHLLVMENEFKAEYEEL  228 (743)
T ss_pred             CcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcc------hhhHhhhhhHHHHHHHhhhhhhHHHHHH
Confidence            4211             13589999999999999999999998864      5677889999999999986         


Q ss_pred             CHHHHHHHHhcCCCCC------ccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHh
Q 045083          289 SVDVAKILIEADPHVP------YSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVY  353 (556)
Q Consensus       289 ~~~~v~~Ll~~~~~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~  353 (556)
                      ...+.+++++.+....      ...|.+|.||||+|+..|+.++++.|++.+.........++.|.+++..
T Consensus       229 ~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~~kk~~a~~~~~~~~~~~  299 (743)
T TIGR00870       229 SCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQKKFVAWPNGQQLLSLY  299 (743)
T ss_pred             HHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHhcceeeccCcchHhHhhh
Confidence            2345566666554432      3468899999999999999999999988654443334445555555543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=5.1e-25  Score=184.74  Aligned_cols=245  Identities=22%  Similarity=0.226  Sum_probs=200.7

Q ss_pred             cCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCc
Q 045083           79 NAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVS  158 (556)
Q Consensus        79 ~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  158 (556)
                      |+..-..+..++.-|..+.-..|.....                  ..++..|..-+-.+.+.|+.+++......+++..
T Consensus        28 ns~q~a~~~~~~~m~~t~p~~~l~~~~s------------------~~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~   89 (296)
T KOG0502|consen   28 NSTQIAELFEQVEMGTTEPRCALTAEIS------------------ALRNALGESLLTVAVRSGNSDVAVQSAQLDPDAI   89 (296)
T ss_pred             ChHHHHHHHHHhhccccchhHHHHHHHH------------------HHHHhcCCcccchhhhcCCcHHHHHhhccCCCCC
Confidence            3344456777777777766666654321                  2345667777788888999999998888888877


Q ss_pred             ccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCC
Q 045083          159 YSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNS  238 (556)
Q Consensus       159 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g  238 (556)
                      ...+..|.+.++.++-.++.+.++..+.++.....      .+..+.+|+..++...+.+.+..+.+..   .+..|+.|
T Consensus        90 ~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgne------vs~~p~s~~slsVhql~L~~~~~~~~n~---VN~~De~G  160 (296)
T KOG0502|consen   90 DETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNE------VSLMPWSPLSLSVHQLHLDVVDLLVNNK---VNACDEFG  160 (296)
T ss_pred             CCCCchhhhhhhhcCCCCCcceeeeeecccccCCc------cccccCChhhHHHHHHHHHHHHHHhhcc---ccCccccC
Confidence            77888899999999999999999999888765432      6778899999999888888777766543   46789999


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHH
Q 045083          239 ETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMA  318 (556)
Q Consensus       239 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A  318 (556)
                      .|||.+|+.+|+.++|++|++.|+++.      ...+...++|.+|+..|..++|+.|+..+++++ .-|.+|.|||-||
T Consensus       161 fTpLiWAaa~G~i~vV~fLL~~GAdp~------~lgk~resALsLAt~ggytdiV~lLL~r~vdVN-vyDwNGgTpLlyA  233 (296)
T KOG0502|consen  161 FTPLIWAAAKGHIPVVQFLLNSGADPD------ALGKYRESALSLATRGGYTDIVELLLTREVDVN-VYDWNGGTPLLYA  233 (296)
T ss_pred             chHhHHHHhcCchHHHHHHHHcCCChh------hhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcc-eeccCCCceeeee
Confidence            999999999999999999999998754      333567789999999999999999999999987 6789999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCCh
Q 045083          319 AANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPT  357 (556)
Q Consensus       319 ~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~  357 (556)
                      ++-++.+|++.||..|++++..|..|++++++|+..|+.
T Consensus       234 vrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr  272 (296)
T KOG0502|consen  234 VRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR  272 (296)
T ss_pred             ecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH
Confidence            999999999999999999999999999999999998876

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.91  E-value=2.4e-24  Score=218.10  Aligned_cols=293  Identities=23%  Similarity=0.223  Sum_probs=256.5

Q ss_pred             ccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCCCChHHHHHHHhCcHHHHHHHHHHhccCC
Q 045083           30 TDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQP  109 (556)
Q Consensus        30 ~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~  109 (556)
                      +..+-.|+|-.||..||.           |.++.++.   + +..+..+|+.|.+||.+|+-.||..+|+.|+++.++.+
T Consensus       753 Te~n~~t~LT~acaggh~-----------e~vellv~---r-ganiehrdkkgf~plImaatagh~tvV~~llk~ha~ve  817 (2131)
T KOG4369|consen  753 TEPNIKTNLTSACAGGHR-----------EEVELLVV---R-GANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVE  817 (2131)
T ss_pred             cCccccccccccccCccH-----------HHHHHHHH---h-cccccccccccchhhhhhcccCchHHHHHHHhhhhhhh
Confidence            346778999999999999           99999844   3 55677899999999999999999999999998876632


Q ss_pred             chhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCC
Q 045083          110 IDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCP  189 (556)
Q Consensus       110 ~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~  189 (556)
                                     ...|+.+.|+|.+||..|..++|++|+..+++-. .++....|||.+|...|+.+++..|+..+.
T Consensus       818 ---------------aQsdrtkdt~lSlacsggr~~vvelLl~~ganke-hrnvsDytPlsla~Sggy~~iI~~llS~Gs  881 (2131)
T KOG4369|consen  818 ---------------AQSDRTKDTMLSLACSGGRTRVVELLLNAGANKE-HRNVSDYTPLSLARSGGYTKIIHALLSSGS  881 (2131)
T ss_pred             ---------------hhcccccCceEEEecCCCcchHHHHHHHhhcccc-ccchhhcCchhhhcCcchHHHHHHHhhccc
Confidence                           3468899999999999999999999999998876 677888999999999999999999999996


Q ss_pred             ChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHH
Q 045083          190 QSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQM  269 (556)
Q Consensus       190 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~  269 (556)
                      ....+.    -..-|-.||..|.++|+.+.++.|++.+.++......+.+|+|-+|+..|+.+++..||....      .
T Consensus       882 eInSrt----gSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~a------n  951 (2131)
T KOG4369|consen  882 EINSRT----GSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQA------N  951 (2131)
T ss_pred             cccccc----ccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhh------h
Confidence            543321    346788999999999999999999999999877778889999999999999999999998876      3


Q ss_pred             hhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCcccc-CCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q 045083          270 LEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSAN-RNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTAL  348 (556)
Q Consensus       270 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L  348 (556)
                      ++.+-+.|.|||+-++..|.+|+=+.|+..|+|.+...- ....|+|-+++..|+.+.++.|+...+.+..+|++|+|+|
T Consensus       952 vehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~L 1031 (2131)
T KOG4369|consen  952 VEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVL 1031 (2131)
T ss_pred             hhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCccc
Confidence            667779999999999999999999999999999875443 4567899999999999999998888888999999999999


Q ss_pred             HHHHhcCChhHHHHH
Q 045083          349 HAAVYTYPTDILERV  363 (556)
Q Consensus       349 ~~A~~~~~~~~~~~~  363 (556)
                      .+|+--+.......+
T Consensus      1032 wla~~Gg~lss~~il 1046 (2131)
T KOG4369|consen 1032 WLASAGGALSSCPIL 1046 (2131)
T ss_pred             chhccCCccccchHH
Confidence            999988776554433

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=1.5e-24  Score=181.90  Aligned_cols=238  Identities=22%  Similarity=0.255  Sum_probs=173.7

Q ss_pred             cCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCc
Q 045083           79 NAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVS  158 (556)
Q Consensus        79 ~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  158 (556)
                      +..|++-+-.+.+.|+.+++..++....+.               +...+.+|..+++.+.-+++.+.+..++.++...+
T Consensus        59 ~~lge~~~~~~~~s~nsd~~v~s~~~~~~~---------------~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgn  123 (296)
T KOG0502|consen   59 NALGESLLTVAVRSGNSDVAVQSAQLDPDA---------------IDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGN  123 (296)
T ss_pred             HhcCCcccchhhhcCCcHHHHHhhccCCCC---------------CCCCCchhhhhhhhcCCCCCcceeeeeecccccCC
Confidence            444555566666667766666665443322               12245557777777777777777777776666655


Q ss_pred             ccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCC
Q 045083          159 YSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNS  238 (556)
Q Consensus       159 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g  238 (556)
                       ..+-.+.+|+.+++...+.+.+..+.++.        ++..|+.|.|||..|+..|+.+++++|++.|++ +....+..
T Consensus       124 -evs~~p~s~~slsVhql~L~~~~~~~~n~--------VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAd-p~~lgk~r  193 (296)
T KOG0502|consen  124 -EVSLMPWSPLSLSVHQLHLDVVDLLVNNK--------VNACDEFGFTPLIWAAAKGHIPVVQFLLNSGAD-PDALGKYR  193 (296)
T ss_pred             -ccccccCChhhHHHHHHHHHHHHHHhhcc--------ccCccccCchHhHHHHhcCchHHHHHHHHcCCC-hhhhhhhh
Confidence             55666777777777777776666665543        233677777777777777777777777777777 35666777


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHH
Q 045083          239 ETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMA  318 (556)
Q Consensus       239 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A  318 (556)
                      .++|.+|++.|+.++|+.|+.++.+      +|..|.+|.|||.+|++.++.++++.|++.|++.. ..+..|.+++..|
T Consensus       194 esALsLAt~ggytdiV~lLL~r~vd------VNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t-~e~dsGy~~mdlA  266 (296)
T KOG0502|consen  194 ESALSLATRGGYTDIVELLLTREVD------VNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVT-QEDDSGYWIMDLA  266 (296)
T ss_pred             hhhHhHHhcCChHHHHHHHHhcCCC------cceeccCCCceeeeeecCChHHHHHHHHhcCCCcc-cccccCCcHHHHH
Confidence            7888888888888888888888763      67788888999999999999999999999998876 6778899999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q 045083          319 AANGSVKIVAKILQKCPSPAHEGPDGKTALH  349 (556)
Q Consensus       319 ~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~  349 (556)
                      +..|+. +|+..+++....+.+|+.-++|+|
T Consensus       267 ValGyr-~Vqqvie~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  267 VALGYR-IVQQVIEKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             HHhhhH-HHHHHHHHHHHHHhhcccCCCCCC
Confidence            998888 677778888888888888788765

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.91  E-value=7.4e-24  Score=229.16  Aligned_cols=250  Identities=18%  Similarity=0.198  Sum_probs=146.2

Q ss_pred             CHHHHHHHhcCCchHHHHhhhh--hcccccccCCCCeeEE-eeeccccccccccccccccchHHHHHHHHhhCccccccc
Q 045083            2 DRKLYEAAAKGDIEPFREIARD--ELESIVTDVMKNTVLH-VNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQA   78 (556)
Q Consensus         2 ~~~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~Lh-~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   78 (556)
                      +.+++.|++.||.+.++.++++  +.++|..|..|.|||| .|+.+++.           ++++.|++   .+.     .
T Consensus        18 ~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~-----------eiv~lLl~---~g~-----~   78 (743)
T TIGR00870        18 EKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENL-----------ELTELLLN---LSC-----R   78 (743)
T ss_pred             HHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChH-----------HHHHHHHh---CCC-----C
Confidence            4678999999999999999999  8999999999999999 89999999           99999954   222     5


Q ss_pred             cCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCc
Q 045083           79 NAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVS  158 (556)
Q Consensus        79 ~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  158 (556)
                      +..|.||||.|+. |+.+.++.++........+....  ..........+..|.||||+|+.+|+.+++++|+++|++++
T Consensus        79 ~~~G~T~Lh~A~~-~~~~~v~~ll~~l~~~~~~~~~~--~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~  155 (743)
T TIGR00870        79 GAVGDTLLHAISL-EYVDAVEAILLHLLAAFRKSGPL--ELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVP  155 (743)
T ss_pred             CCcChHHHHHHHh-ccHHHHHHHHHHHhhcccccCch--hhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC
Confidence            7889999999987 33444444443322211000000  00000011234579999999999999999999999998886


Q ss_pred             ccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCC
Q 045083          159 YSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNS  238 (556)
Q Consensus       159 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g  238 (556)
                      .....  ....                 .....       .....|.+|||.|+..|+.+++++|++++++. +..|..|
T Consensus       156 ~~~~~--~~~~-----------------~~~~~-------~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadi-n~~d~~g  208 (743)
T TIGR00870       156 ARACG--DFFV-----------------KSQGV-------DSFYHGESPLNAAACLGSPSIVALLSEDPADI-LTADSLG  208 (743)
T ss_pred             cCcCC--chhh-----------------cCCCC-------CcccccccHHHHHHHhCCHHHHHHHhcCCcch-hhHhhhh
Confidence            32110  0000                 00000       01234455555555555555555555555442 4455555


Q ss_pred             CCHHHHHHHcC-----C----HHHHHHHHHcCChhH-HHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcC
Q 045083          239 ETPLYMAVANG-----S----AEIVAEILQNCPESA-ARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEAD  300 (556)
Q Consensus       239 ~t~L~~A~~~g-----~----~~~v~~Ll~~~~~~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~  300 (556)
                      +||||+|+..+     +    ..+.+.+++.+.... ..+..+..|.+|.||||+|+..|+.++++.|++.+
T Consensus       209 ~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~  280 (743)
T TIGR00870       209 NTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIK  280 (743)
T ss_pred             hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHH
Confidence            55555555544     1    112223332221100 00112334555666666666666666666666543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.90  E-value=1.7e-22  Score=219.65  Aligned_cols=194  Identities=19%  Similarity=0.218  Sum_probs=168.5

Q ss_pred             CCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHH
Q 045083          142 RSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVK  221 (556)
Q Consensus       142 g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~  221 (556)
                      ++.++-..+.+.+..   ..+..+.++|+.||..|+.++++.|++.+.+...      .|..|.||||.|+..|+.++++
T Consensus       505 ~~l~v~~ll~~~~~~---~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~------~d~~G~TpLh~Aa~~g~~~~v~  575 (823)
T PLN03192        505 HDLNVGDLLGDNGGE---HDDPNMASNLLTVASTGNAALLEELLKAKLDPDI------GDSKGRTPLHIAASKGYEDCVL  575 (823)
T ss_pred             ccccHHHHHhhcccc---cCCccchhHHHHHHHcCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHcChHHHHH
Confidence            444555556555443   2344577999999999999999999999877543      7899999999999999999999


Q ss_pred             HHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCC
Q 045083          222 ILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADP  301 (556)
Q Consensus       222 ~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~  301 (556)
                      .|++++.+. +.+|.+|.||||.|+..|+.++++.|++.+..        .....|.++||.|+.+|+.++++.|+++|+
T Consensus       576 ~Ll~~gadi-n~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~--------~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Ga  646 (823)
T PLN03192        576 VLLKHACNV-HIRDANGNTALWNAISAKHHKIFRILYHFASI--------SDPHAAGDLLCTAAKRNDLTAMKELLKQGL  646 (823)
T ss_pred             HHHhcCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcc--------cCcccCchHHHHHHHhCCHHHHHHHHHCCC
Confidence            999999985 78899999999999999999999999987653        123567899999999999999999999999


Q ss_pred             CCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCC-CcHHHHHHhc
Q 045083          302 HVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDG-KTALHAAVYT  354 (556)
Q Consensus       302 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g-~t~L~~A~~~  354 (556)
                      +++ .+|.+|+||||+|+..|+.+++++|+++|++++.+|..| .||++++...
T Consensus       647 din-~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        647 NVD-SEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELL  699 (823)
T ss_pred             CCC-CCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHH
Confidence            986 789999999999999999999999999999999999998 9999988664

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.88  E-value=9e-22  Score=213.92  Aligned_cols=181  Identities=17%  Similarity=0.223  Sum_probs=155.9

Q ss_pred             ccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcH
Q 045083          128 NEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTP  207 (556)
Q Consensus       128 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~  207 (556)
                      +..+.++||.|+..|+.++++.|++.|.+++ ..|..|.||||+|+..|+.+++++|++++.+...      +|.+|.||
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n-~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~------~d~~G~Tp  594 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDPD-IGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHI------RDANGNTA  594 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCC------cCCCCCCH
Confidence            4557789999999999999999999999987 7888999999999999999999999998876433      78899999


Q ss_pred             hHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhc
Q 045083          208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRL  287 (556)
Q Consensus       208 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~  287 (556)
                      ||.|+..|+.++++.|++.+...   ....+.++||.|+..|+.++++.|++++.+      ++.+|.+|+||||+|+..
T Consensus       595 L~~A~~~g~~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad------in~~d~~G~TpLh~A~~~  665 (823)
T PLN03192        595 LWNAISAKHHKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQGLN------VDSEDHQGATALQVAMAE  665 (823)
T ss_pred             HHHHHHhCCHHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHHC
Confidence            99999999999999999876543   245677999999999999999999999874      578889999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCccccCCC-CCHHHHHHHcCCHH
Q 045083          288 RSVDVAKILIEADPHVPYSANRNS-ETPLYMAAANGSVK  325 (556)
Q Consensus       288 g~~~~v~~Ll~~~~~~~~~~~~~g-~t~L~~A~~~~~~~  325 (556)
                      |+.+++++|+++|++++ ..|..| .||++++......+
T Consensus       666 g~~~iv~~Ll~~GAdv~-~~~~~g~~t~~~l~~~~~~~~  703 (823)
T PLN03192        666 DHVDMVRLLIMNGADVD-KANTDDDFSPTELRELLQKRE  703 (823)
T ss_pred             CcHHHHHHHHHcCCCCC-CCCCCCCCCHHHHHHHHHHhh
Confidence            99999999999999986 567666 99998886655443

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.88  E-value=1.1e-22  Score=200.12  Aligned_cols=222  Identities=27%  Similarity=0.343  Sum_probs=158.9

Q ss_pred             cccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCCCChHHHHHHHhCcHHHHHHHHHH
Q 045083           25 LESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVF  104 (556)
Q Consensus        25 ~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~  104 (556)
                      .+.+..|.+|.|.||.|+.+|+.           ++.+.+++.    ...+...+..|.+|||+|+.+|+.++||.|+.+
T Consensus        40 ds~n~qd~~gfTalhha~Lng~~-----------~is~llle~----ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q  104 (854)
T KOG0507|consen   40 DSHNLQDYSGFTLLHHAVLNGQN-----------QISKLLLDY----EALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQ  104 (854)
T ss_pred             ccccccCccchhHHHHHHhcCch-----------HHHHHHhcc----hhhhhhhhccCcceEEehhhcCcchHHHHHHhc
Confidence            44567788999999999999999           999999664    556677789999999999999999999999988


Q ss_pred             hccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHH
Q 045083          105 ANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEI  184 (556)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  184 (556)
                      +..                ++..+..|.||||.|+..|+.+++.+|++++.+.. ..|..+.|+|.+|++.|..++++.|
T Consensus       105 ~d~----------------~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~-i~nns~~t~ldlA~qfgr~~Vvq~l  167 (854)
T KOG0507|consen  105 TDI----------------LNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPF-IRNNSKETVLDLASRFGRAEVVQML  167 (854)
T ss_pred             ccC----------------CCcccccCcCccchhhhhcchHHHHHHHhcCCCcc-ccCcccccHHHHHHHhhhhHHHHHH
Confidence            743                56678899999999999999999999999999987 8899999999999999999999999


Q ss_pred             HHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChh
Q 045083          185 LQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPES  264 (556)
Q Consensus       185 l~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~  264 (556)
                      ++.. -+...                            +...+   ...++-.+.+|||.|+++|+.++++.|++.+.+ 
T Consensus       168 l~~~-~~~~~----------------------------~~~~~---~~~~~~~~~~plHlaakngh~~~~~~ll~ag~d-  214 (854)
T KOG0507|consen  168 LQKK-FPVQS----------------------------SLRVG---DIKRPFPAIYPLHLAAKNGHVECMQALLEAGFD-  214 (854)
T ss_pred             hhhc-cchhh----------------------------cccCC---CCCCCCCCcCCcchhhhcchHHHHHHHHhcCCC-
Confidence            9872 11100                            00111   123344445555555555555555555555542 


Q ss_pred             HHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHH
Q 045083          265 AARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMA  318 (556)
Q Consensus       265 ~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A  318 (556)
                           ++.. ....|+||.|+-+|..++|++|++.|.+.. .+|.+|+|+|.+-
T Consensus       215 -----in~~-t~~gtalheaalcgk~evvr~ll~~gin~h-~~n~~~qtaldil  261 (854)
T KOG0507|consen  215 -----INYT-TEDGTALHEAALCGKAEVVRFLLEIGINTH-IKNQHGQTALDII  261 (854)
T ss_pred             -----cccc-cccchhhhhHhhcCcchhhhHHHhhccccc-cccccchHHHHHH
Confidence                 2222 222355555555555555555555555443 4455555555443

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.85  E-value=1.7e-20  Score=169.51  Aligned_cols=166  Identities=25%  Similarity=0.298  Sum_probs=119.5

Q ss_pred             HHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHc-----CCHHHHHHHHHhCCChhHH
Q 045083          120 ARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVAN-----GSAEIVAEILQNCPQSAAR  194 (556)
Q Consensus       120 ~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~-----g~~~~v~~Ll~~~~~~~~~  194 (556)
                      ....++..|.+|+|+||||+.++++++|+.|++.|..-....|+.|.||+++++..     .+.++|+.|...+.- ..+
T Consensus       257 L~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnV-NaK  335 (452)
T KOG0514|consen  257 LEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDV-NAK  335 (452)
T ss_pred             HHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCc-chh
Confidence            34558899999999999999999999999999998887778899999999998753     456777777776532 222


Q ss_pred             HHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcC
Q 045083          195 QMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTN  274 (556)
Q Consensus       195 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  274 (556)
                           -...|+|+|+.|+.+|+.++++.|+..++++ +.+|.+|.|+|++|+++|+.|+++.||....-     .....|
T Consensus       336 -----AsQ~gQTALMLAVSHGr~d~vk~LLacgAdV-NiQDdDGSTALMCA~EHGhkEivklLLA~p~c-----d~sLtD  404 (452)
T KOG0514|consen  336 -----ASQHGQTALMLAVSHGRVDMVKALLACGADV-NIQDDDGSTALMCAAEHGHKEIVKLLLAVPSC-----DISLTD  404 (452)
T ss_pred             -----hhhhcchhhhhhhhcCcHHHHHHHHHccCCC-ccccCCccHHHhhhhhhChHHHHHHHhccCcc-----cceeec
Confidence                 3556777777777777777777777777774 66777777777777777777777777655421     234555


Q ss_pred             CCCCchhHHHHhcCCHHHHHHHH
Q 045083          275 EEQNTPLHEAVRLRSVDVAKILI  297 (556)
Q Consensus       275 ~~g~t~Lh~A~~~g~~~~v~~Ll  297 (556)
                      .+|-|+|.+|-..|+.||.-+|.
T Consensus       405 ~DgSTAl~IAleagh~eIa~mlY  427 (452)
T KOG0514|consen  405 VDGSTALSIALEAGHREIAVMLY  427 (452)
T ss_pred             CCCchhhhhHHhcCchHHHHHHH
Confidence            66666666666666666555554

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.84  E-value=2.5e-20  Score=168.48  Aligned_cols=164  Identities=24%  Similarity=0.286  Sum_probs=122.5

Q ss_pred             cccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCCCChHHHHHHHh-----CcHHHHHHH
Q 045083           27 SIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKGDSPLHLAAKK-----GHTAIVEFL  101 (556)
Q Consensus        27 ~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpLh~A~~~-----g~~~iv~~L  101 (556)
                      +|..|.+|+|+|||++.++++           ++++.|   ++.+--.++..|.-|+||+.+|+..     .+.++|..|
T Consensus       261 VNlaDsNGNTALHYsVSHaNF-----------~VV~~L---LDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~L  326 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANF-----------DVVSIL---LDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERL  326 (452)
T ss_pred             hhhhcCCCCeeeeeeecccch-----------HHHHHH---hccCcccccccccccccHHHHHHHHhhcchhhHHHHHHH
Confidence            456788899999999999888           888888   6666667788888888988888764     366788888


Q ss_pred             HHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHH
Q 045083          102 IVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIV  181 (556)
Q Consensus       102 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v  181 (556)
                      ...|.-+.                .-...|+|+|++|+.+|..++|+.|+..|++++ ..|.+|.|+|++|+.+||.|++
T Consensus       327 F~mgnVNa----------------KAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVN-iQDdDGSTALMCA~EHGhkEiv  389 (452)
T KOG0514|consen  327 FKMGDVNA----------------KASQHGQTALMLAVSHGRVDMVKALLACGADVN-IQDDDGSTALMCAAEHGHKEIV  389 (452)
T ss_pred             HhccCcch----------------hhhhhcchhhhhhhhcCcHHHHHHHHHccCCCc-cccCCccHHHhhhhhhChHHHH
Confidence            77765310                123458888888888888888888888888887 7777888888888888888888


Q ss_pred             HHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhc
Q 045083          182 AEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKA  226 (556)
Q Consensus       182 ~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  226 (556)
                      +.|+....-.     +...|.+|-|+|.+|...|+.|+.-+|..+
T Consensus       390 klLLA~p~cd-----~sLtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  390 KLLLAVPSCD-----ISLTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             HHHhccCccc-----ceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            8887754222     122677777777777777777777666543

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.83  E-value=1.3e-20  Score=179.51  Aligned_cols=227  Identities=25%  Similarity=0.335  Sum_probs=126.5

Q ss_pred             HHHHHHhcCCchHHHHhhhhhcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCCCC
Q 045083            4 KLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKGD   83 (556)
Q Consensus         4 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~   83 (556)
                      .++.|+..||.+.+..|+..|.+++..+.+|.|+||-++...+.           ++++++++.    +..++..|..|+
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~-----------e~v~~l~e~----ga~Vn~~d~e~w  107 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNL-----------EMVKFLVEN----GANVNAQDNEGW  107 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccH-----------HHHHHHHHh----cCCccccccccC
Confidence            35566667777777777766666665556666666666666666           666666433    444555666666


Q ss_pred             hHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccC
Q 045083           84 SPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANR  163 (556)
Q Consensus        84 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~  163 (556)
                      ||||.|+.+||.+++++|+.+|+.                +...|.+|..|+-.|..--..+                  
T Consensus       108 tPlhaaascg~~~i~~~li~~gA~----------------~~avNsdg~~P~dl~e~ea~~~------------------  153 (527)
T KOG0505|consen  108 TPLHAAASCGYLNIVEYLIQHGAN----------------LLAVNSDGNMPYDLAEDEATLD------------------  153 (527)
T ss_pred             CcchhhcccccHHHHHHHHHhhhh----------------hhhccCCCCCccccccCcchhH------------------
Confidence            666666666666666666665554                3334555555544433222222                  


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCH----HHHHHHHhcCCCCCccCCCCCC
Q 045083          164 NSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRV----DVVKILIKADPHVPYSANRNSE  239 (556)
Q Consensus       164 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~~~~~~~~~~~~g~  239 (556)
                                      ++..-....               |-+ +..+-.....    ++-.+ +..+... ...+..|-
T Consensus       154 ----------------~l~~~~~r~---------------gi~-iea~R~~~e~~ml~D~~q~-l~~G~~~-d~~~~rG~  199 (527)
T KOG0505|consen  154 ----------------VLETEMARQ---------------GID-IEAARKAEEQTMLDDARQW-LNAGAEL-DARHARGA  199 (527)
T ss_pred             ----------------HHHHHHHHh---------------ccc-HHHHhhhhHHHHHHHHHHH-Hhccccc-cccccccc
Confidence                            222111110               000 1111000000    12222 2244442 34444477


Q ss_pred             CHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHH
Q 045083          240 TPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAA  319 (556)
Q Consensus       240 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~  319 (556)
                      |.||.|+.+|+.++.+.|++.+..      ++.+|.+|+||||.|+.-|+.++++.|+++|+++. .....|.||+.+|.
T Consensus       200 T~lHvAaa~Gy~e~~~lLl~ag~~------~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d-~~t~~g~~p~dv~d  272 (527)
T KOG0505|consen  200 TALHVAAANGYTEVAALLLQAGYS------VNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMD-AKTKMGETPLDVAD  272 (527)
T ss_pred             hHHHHHHhhhHHHHHHHHHHhccC------cccccccCCCcccHHHHhhhHhHHHHHHHhhcccc-hhhhcCCCCccchh
Confidence            777777777777777777777653      45666777777777777777777777777777765 55667777777765


Q ss_pred             H
Q 045083          320 A  320 (556)
Q Consensus       320 ~  320 (556)
                      .
T Consensus       273 e  273 (527)
T KOG0505|consen  273 E  273 (527)
T ss_pred             h
Confidence            4

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.82  E-value=5e-20  Score=175.61  Aligned_cols=228  Identities=22%  Similarity=0.220  Sum_probs=183.2

Q ss_pred             HHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCC
Q 045083           86 LHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNS  165 (556)
Q Consensus        86 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g  165 (556)
                      +.-|+..|+.+-|+.|+..++.                .+..|.+|.|+||-+|.-.+.+||++|++.|++++ ..|..|
T Consensus        44 ~l~A~~~~d~~ev~~ll~~ga~----------------~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn-~~d~e~  106 (527)
T KOG0505|consen   44 FLEACSRGDLEEVRKLLNRGAS----------------PNLCNVDGLTALHQACIDDNLEMVKFLVENGANVN-AQDNEG  106 (527)
T ss_pred             HHhccccccHHHHHHHhccCCC----------------ccccCCccchhHHHHHhcccHHHHHHHHHhcCCcc-cccccc
Confidence            5558889999999999998866                36689999999999999999999999999999998 889999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 045083          166 ETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMA  245 (556)
Q Consensus       166 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A  245 (556)
                      .||||.|+..|+.+++++|++++++...      .+.+|..|...+......++...-......          + +..+
T Consensus       107 wtPlhaaascg~~~i~~~li~~gA~~~a------vNsdg~~P~dl~e~ea~~~~l~~~~~r~gi----------~-iea~  169 (527)
T KOG0505|consen  107 WTPLHAAASCGYLNIVEYLIQHGANLLA------VNSDGNMPYDLAEDEATLDVLETEMARQGI----------D-IEAA  169 (527)
T ss_pred             CCcchhhcccccHHHHHHHHHhhhhhhh------ccCCCCCccccccCcchhHHHHHHHHHhcc----------c-HHHH
Confidence            9999999999999999999999987654      688888888877665555555544432211          1 1111


Q ss_pred             HHcCCHHH---HHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcC
Q 045083          246 VANGSAEI---VAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANG  322 (556)
Q Consensus       246 ~~~g~~~~---v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  322 (556)
                      -......+   ++..+..+..      .+..+..|-|.||.|+.+|..++.++|++.|.++. .+|.+|+||||.|+..|
T Consensus       170 R~~~e~~ml~D~~q~l~~G~~------~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~-~~D~dgWtPlHAAA~Wg  242 (527)
T KOG0505|consen  170 RKAEEQTMLDDARQWLNAGAE------LDARHARGATALHVAAANGYTEVAALLLQAGYSVN-IKDYDGWTPLHAAAHWG  242 (527)
T ss_pred             hhhhHHHHHHHHHHHHhcccc------ccccccccchHHHHHHhhhHHHHHHHHHHhccCcc-cccccCCCcccHHHHhh
Confidence            11111111   2222334432      33445569999999999999999999999999986 78999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhc
Q 045083          323 SVKIVAKILQKCPSPAHEGPDGKTALHAAVYT  354 (556)
Q Consensus       323 ~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~  354 (556)
                      +.++++.|+++|++.+.+...|.||+++|...
T Consensus       243 ~~~~~elL~~~ga~~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  243 QEDACELLVEHGADMDAKTKMGETPLDVADEE  274 (527)
T ss_pred             hHhHHHHHHHhhcccchhhhcCCCCccchhhh
Confidence            99999999999999999999999999999863

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.82  E-value=2.6e-19  Score=155.56  Aligned_cols=139  Identities=12%  Similarity=0.119  Sum_probs=115.0

Q ss_pred             cCCCCCcHhHHHHhcCCH----HHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHH---HHHHHHcCChhHHHHHhhh
Q 045083          200 TNEEQNTPLHEAVRLRRV----DVVKILIKADPHVPYSANRNSETPLYMAVANGSAEI---VAEILQNCPESAARQMLEK  272 (556)
Q Consensus       200 ~~~~g~t~L~~A~~~~~~----~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~---v~~Ll~~~~~~~~~~~~~~  272 (556)
                      .+.++.+++|.|++.|+.    +++++|.+.+..+ +..|.+|+||||+|+..|+.+.   +++|++.+.+      ++.
T Consensus        16 ~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad------in~   88 (166)
T PHA02743         16 IDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD------INA   88 (166)
T ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC------CCC
Confidence            566778889999998887    5566677777664 6778889999999999887654   7899988874      566


Q ss_pred             cC-CCCCchhHHHHhcCCHHHHHHHHh-cCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCc
Q 045083          273 TN-EEQNTPLHEAVRLRSVDVAKILIE-ADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKT  346 (556)
Q Consensus       273 ~~-~~g~t~Lh~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t  346 (556)
                      ++ ..|+||||+|+..|+.+++++|++ .|.++. .+|..|+||||+|+..++.+++++|+.+|++++.++..|.+
T Consensus        89 ~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~-~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~  163 (166)
T PHA02743         89 RELGTGNTLLHIAASTKNYELAEWLCRQLGVNLG-AINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGLS  163 (166)
T ss_pred             CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCcc-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCcc
Confidence            66 479999999999999999999995 788875 67889999999999999999999999999999988887753

>PHA02741 hypothetical protein; Provisional

Probab=99.82  E-value=3.9e-19  Score=155.32  Aligned_cols=134  Identities=15%  Similarity=0.149  Sum_probs=107.5

Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCC----HHHHHHHHhcCCCCCccc
Q 045083          232 YSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRS----VDVAKILIEADPHVPYSA  307 (556)
Q Consensus       232 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~----~~~v~~Ll~~~~~~~~~~  307 (556)
                      +.+|.+|.||||+|+..|+.++++.|+...........++.+|..|+||||+|+..|+    .+++++|++.|++++ .+
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin-~~   93 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADIN-AQ   93 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCC-CC
Confidence            3456788899999999999999988865321001112467888899999999999998    588999999999886 55


Q ss_pred             c-CCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCcHHHHHHhcCChhHHHHHHHh
Q 045083          308 N-RNSETPLYMAAANGSVKIVAKILQ-KCPSPAHEGPDGKTALHAAVYTYPTDILERVLIV  366 (556)
Q Consensus       308 ~-~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~~~~~  366 (556)
                      + ..|+||||+|+.+++.+++++|+. .+.+++.+|.+|+||||+|+..+..++++.+...
T Consensus        94 ~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~  154 (169)
T PHA02741         94 EMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREI  154 (169)
T ss_pred             CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHH
Confidence            6 489999999999999999999887 4889999999999999999999888887776543

>PHA02741 hypothetical protein; Provisional

Probab=99.80  E-value=1e-18  Score=152.64  Aligned_cols=129  Identities=19%  Similarity=0.266  Sum_probs=94.3

Q ss_pred             cCCCCCcHhHHHHhcCCHHHHHHHHhc------CCCCCccCCCCCCCHHHHHHHcCC----HHHHHHHHHcCChhHHHHH
Q 045083          200 TNEEQNTPLHEAVRLRRVDVVKILIKA------DPHVPYSANRNSETPLYMAVANGS----AEIVAEILQNCPESAARQM  269 (556)
Q Consensus       200 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~------~~~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~~~~~~~~~~  269 (556)
                      ++..|.||||.|+..|+.++++.|+..      +.+ .+.+|..|+||||+|+..|+    .+++++|++.+.+      
T Consensus        17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~-in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad------   89 (169)
T PHA02741         17 KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAA-LNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD------   89 (169)
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhh-hhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC------
Confidence            566777777777777777777766432      233 35677778888888888877    4777888877763      


Q ss_pred             hhhcCC-CCCchhHHHHhcCCHHHHHHHHh-cCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 045083          270 LEKTNE-EQNTPLHEAVRLRSVDVAKILIE-ADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPS  336 (556)
Q Consensus       270 ~~~~~~-~g~t~Lh~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~  336 (556)
                      ++.++. .|+||||+|+..++.+++++|++ .++++. ..|..|+||||+|+..++.++++.|+..++.
T Consensus        90 in~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~-~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         90 INAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLH-FCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-cCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            455553 78888888888888888888886 476664 6677888888888888888888887776544

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.79  E-value=1.9e-18  Score=150.09  Aligned_cols=142  Identities=12%  Similarity=0.143  Sum_probs=108.9

Q ss_pred             ccccccCCCChHHHHHHHhCcH----HHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHH---
Q 045083           74 LLFQANAKGDSPLHLAAKKGHT----AIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDV---  146 (556)
Q Consensus        74 ~~~~~~~~g~tpLh~A~~~g~~----~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~---  146 (556)
                      +.+..+.++.++||.||+.|+.    +++++|++.+..                ++.+|..|+||||+|+..|+.+.   
T Consensus        12 ~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~----------------~~~~d~~g~t~Lh~Aa~~g~~~~~~~   75 (166)
T PHA02743         12 GAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHL----------------LHRYDHHGRQCTHMVAWYDRANAVMK   75 (166)
T ss_pred             HHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchh----------------hhccCCCCCcHHHHHHHhCccCHHHH
Confidence            3445667888899999999998    455556555543                56678899999999999887654   


Q ss_pred             HHHHHhcCCCCccccc-CCCCcHHHHHHHcCCHHHHHHHHH-hCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHH
Q 045083          147 VKILIKADPHVSYSAN-RNSETLLYMAVANGSAEIVAEILQ-NCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILI  224 (556)
Q Consensus       147 v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  224 (556)
                      +++|++.|++++ ..+ ..|.||||+|+..|+.+++++|++ .+.+..      ..+..|.||||+|+..++.+++++|+
T Consensus        76 i~~Ll~~Gadin-~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~------~~d~~g~tpL~~A~~~~~~~iv~~Ll  148 (166)
T PHA02743         76 IELLVNMGADIN-ARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLG------AINYQHETAYHIAYKMRDRRMMEILR  148 (166)
T ss_pred             HHHHHHcCCCCC-CCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCcc------CcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            789999998887 455 578999999999999999999885 554432      26788888898888888888888888


Q ss_pred             hcCCCCCccCCCCCC
Q 045083          225 KADPHVPYSANRNSE  239 (556)
Q Consensus       225 ~~~~~~~~~~~~~g~  239 (556)
                      +++++. +.++..|.
T Consensus       149 ~~ga~~-~~~~~~~~  162 (166)
T PHA02743        149 ANGAVC-DDPLSIGL  162 (166)
T ss_pred             HcCCCC-CCcccCCc
Confidence            888775 45555453

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.78  E-value=1.6e-18  Score=149.44  Aligned_cols=133  Identities=13%  Similarity=0.075  Sum_probs=92.5

Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-hhHHHHHhhhcCCCCCchhHHHHhcCCH---HHHHHHHhcCCCCCccc
Q 045083          232 YSANRNSETPLYMAVANGSAEIVAEILQNCP-ESAARQMLEKTNEEQNTPLHEAVRLRSV---DVAKILIEADPHVPYSA  307 (556)
Q Consensus       232 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~~~g~t~Lh~A~~~g~~---~~v~~Ll~~~~~~~~~~  307 (556)
                      +.+|.+|.||||+|+..|+..  ..+...+. ....+..+..+|..|.||||+|+..|+.   +++++|++.|++++ .+
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin-~~   87 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADIN-GK   87 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcc-cc
Confidence            445667777777777777632  22211110 0001113455677888888888888876   46778888888876 45


Q ss_pred             c-CCCCCHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHhcCChhHHHHHHHhh
Q 045083          308 N-RNSETPLYMAAANGSVKIVAKILQK-CPSPAHEGPDGKTALHAAVYTYPTDILERVLIVR  367 (556)
Q Consensus       308 ~-~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~d~~g~t~L~~A~~~~~~~~~~~~~~~~  367 (556)
                      + ..|+||||+|+.+++.+++++|+.+ +.+++.+|..|+||||+|+..++.++++.++...
T Consensus        88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~g  149 (154)
T PHA02736         88 ERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKG  149 (154)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            5 5788888888888888888888764 7788888888888888888888888777766543

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.78  E-value=4.4e-18  Score=159.04  Aligned_cols=158  Identities=15%  Similarity=0.182  Sum_probs=130.8

Q ss_pred             HhhhccCCCcH-hHHHHhcCCHHHHHHHHhcCCCCccc---ccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhh
Q 045083          124 LKMTNEEQNTP-LHEAVRLRSVDVVKILIKADPHVSYS---ANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEK  199 (556)
Q Consensus       124 l~~~~~~g~t~-Lh~A~~~g~~~~v~~Ll~~~~~~~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~  199 (556)
                      +..+|..|.|+ ||.|++.|+.+++++|+++|++++..   .+..|.||||+|+..|+.+++++|++++++....     
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~-----   99 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRY-----   99 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcc-----
Confidence            55677777765 66777889999999999999998743   2468999999999999999999999999875431     


Q ss_pred             cCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCc
Q 045083          200 TNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNT  279 (556)
Q Consensus       200 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t  279 (556)
                      .+..|.||||.|+..++.+++++|++.+++. +.+|.+|.||||+|+..++.+++..+...           ..+..+.+
T Consensus       100 ~~~~g~TpLh~Aa~~~~~eivklLL~~GAdi-n~kd~~G~TpL~~A~~~~~~~~~~~~~~~-----------~~~~~~~~  167 (300)
T PHA02884        100 AEEAKITPLYISVLHGCLKCLEILLSYGADI-NIQTNDMVTPIELALMICNNFLAFMICDN-----------EISNFYKH  167 (300)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHhCChhHHHHhcCC-----------cccccccC
Confidence            2457999999999999999999999999995 78899999999999999998887655422           23466778


Q ss_pred             hhHHHHhcCCHHHHHHHHhcCC
Q 045083          280 PLHEAVRLRSVDVAKILIEADP  301 (556)
Q Consensus       280 ~Lh~A~~~g~~~~v~~Ll~~~~  301 (556)
                      |.+++   ++.|+++.|+.++.
T Consensus       168 ~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        168 PKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             hhhhh---ccHHHHHHHHHHHH
Confidence            88875   47899999998775

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.77  E-value=5.6e-18  Score=137.25  Aligned_cols=144  Identities=26%  Similarity=0.293  Sum_probs=123.7

Q ss_pred             HhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHh
Q 045083          207 PLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVR  286 (556)
Q Consensus       207 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~  286 (556)
                      -+..|+..+..+.|+.|++..++..+.+|.+|.||||.|+.+|+.++++.|+..+++      .+.+...|+||||.||+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn------~~a~T~~GWTPLhSAck  139 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN------KEAKTNEGWTPLHSACK  139 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCC------cccccccCccchhhhhc
Confidence            356788889999999999999999999999999999999999999999999999875      45677899999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHH-HHHHHhc-CCCCCCCCCCCCcHHHHHHhcCCh
Q 045083          287 LRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKI-VAKILQK-CPSPAHEGPDGKTALHAAVYTYPT  357 (556)
Q Consensus       287 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~-v~~Ll~~-~~~~~~~d~~g~t~L~~A~~~~~~  357 (556)
                      -++.+++-.|+++|++++ .......||||+|+..++... +.+|+.. +-.+..+++.+.||+++|-..+-.
T Consensus       140 WnN~~va~~LLqhgaDVn-A~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s  211 (228)
T KOG0512|consen  140 WNNFEVAGRLLQHGADVN-AQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMS  211 (228)
T ss_pred             ccchhHHHHHHhccCccc-ccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhh
Confidence            999999999999999997 666778999999999887654 4444433 455788899999999999876544

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.77  E-value=5.3e-18  Score=146.17  Aligned_cols=137  Identities=15%  Similarity=0.167  Sum_probs=103.1

Q ss_pred             cccccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCH---HHHHHHH
Q 045083           75 LFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSV---DVVKILI  151 (556)
Q Consensus        75 ~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~---~~v~~Ll  151 (556)
                      .+.+|.+|.||||+||+.|+.  ++.+...+...+         .....+..+|.+|.||||+|+..|+.   +++++|+
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~---------~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll   78 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGV--TDLLAFKNAISD---------ENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLM   78 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcc---------hhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHH
Confidence            456788999999999999983  344433322111         11233566789999999999999986   4688999


Q ss_pred             hcCCCCccccc-CCCCcHHHHHHHcCCHHHHHHHHHh-CCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCC
Q 045083          152 KADPHVSYSAN-RNSETLLYMAVANGSAEIVAEILQN-CPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPH  229 (556)
Q Consensus       152 ~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~  229 (556)
                      +.|.+++ ..+ ..|.||||+|+..|+.+++++|++. +.+..      ..+..|.||||+|+..|+.+++++|++.+++
T Consensus        79 ~~gadin-~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n------~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736         79 EWGADIN-GKERVFGNTPLHIAVYTQNYELATWLCNQPGVNME------ILNYAFKTPYYVACERHDAKMMNILRAKGAQ  151 (154)
T ss_pred             HcCCCcc-ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCc------cccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999887 444 5889999999999999999998874 44322      2677888888888888888888888887765

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.77  E-value=1.1e-17  Score=156.35  Aligned_cols=161  Identities=16%  Similarity=0.177  Sum_probs=131.1

Q ss_pred             cccccCCCChH-HHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhc
Q 045083           75 LFQANAKGDSP-LHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKA  153 (556)
Q Consensus        75 ~~~~~~~g~tp-Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  153 (556)
                      +..+|..|.|+ ||.|+..|+.+++++|+++|++.+..            ....+..|.||||+|+..|+.+++++|+++
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~------------~~~sd~~g~TpLh~Aa~~~~~eivklLL~~   92 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAP------------FPLSENSKTNPLIYAIDCDNDDAAKLLIRY   92 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCcccc------------CcccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            45677788765 66677779999999999999974320            001256899999999999999999999999


Q ss_pred             CCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCcc
Q 045083          154 DPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYS  233 (556)
Q Consensus       154 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~  233 (556)
                      |++++...+..|.||||.|+..|+.+++++|++++++...      .+..|.||||.|+..++.+++..+..      ..
T Consensus        93 GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~------kd~~G~TpL~~A~~~~~~~~~~~~~~------~~  160 (300)
T PHA02884         93 GADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINI------QTNDMVTPIELALMICNNFLAFMICD------NE  160 (300)
T ss_pred             CCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHhCChhHHHHhcC------Cc
Confidence            9999844566899999999999999999999999977543      78899999999999998888766643      22


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q 045083          234 ANRNSETPLYMAVANGSAEIVAEILQNCP  262 (556)
Q Consensus       234 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~  262 (556)
                      .+..+.+|++++   ++.++++.|+++..
T Consensus       161 ~~~~~~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        161 ISNFYKHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             ccccccChhhhh---ccHHHHHHHHHHHH
Confidence            466678888875   47899999998874

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.73  E-value=2.7e-17  Score=133.31  Aligned_cols=118  Identities=25%  Similarity=0.274  Sum_probs=52.8

Q ss_pred             HhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCC
Q 045083          124 LKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEE  203 (556)
Q Consensus       124 l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~  203 (556)
                      ++.+|.+|.||||.|+.+|+.++++.|+..|++.. .....|.||||-||.-.+.+++..|++++++...      ....
T Consensus        90 vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~-a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA------~t~g  162 (228)
T KOG0512|consen   90 VNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKE-AKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNA------QTKG  162 (228)
T ss_pred             ccccccccccHHHHHHhcCchHHHHHHHHccCCcc-cccccCccchhhhhcccchhHHHHHHhccCcccc------cccc
Confidence            34444444444444444444444444444444443 3334444444444444444444444444443222      3334


Q ss_pred             CCcHhHHHHhcCCH-HHHHHHHhcCCCCCccCCCCCCCHHHHHHHc
Q 045083          204 QNTPLHEAVRLRRV-DVVKILIKADPHVPYSANRNSETPLYMAVAN  248 (556)
Q Consensus       204 g~t~L~~A~~~~~~-~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  248 (556)
                      ..||||.|+...+. ..+.+|+......+...+..+.||+.+|-+.
T Consensus       163 ~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  163 LLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRT  208 (228)
T ss_pred             cchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHh
Confidence            44455544443332 2333333333233344445555555555443

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.73  E-value=1e-15  Score=153.64  Aligned_cols=214  Identities=22%  Similarity=0.272  Sum_probs=157.0

Q ss_pred             cHhHHHHhcCCHHHHHHHHhcC---------CCCcccccCCCCcHHHHHHH---cCCHHHHHHHHHhCCChhHHHHhhhc
Q 045083          133 TPLHEAVRLRSVDVVKILIKAD---------PHVSYSANRNSETLLYMAVA---NGSAEIVAEILQNCPQSAARQMLEKT  200 (556)
Q Consensus       133 t~Lh~A~~~g~~~~v~~Ll~~~---------~~~~~~~~~~g~t~L~~A~~---~g~~~~v~~Ll~~~~~~~~~~~~~~~  200 (556)
                      .++..|...+..+....++..+         -+.. .+...|+|.||.|..   .++.++++.|++..|.-... .....
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~-~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind-~~~~e  180 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLN-ERGATGETLLHKALLNLSDGHNELARVLLEIFPKLIND-IYTSE  180 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccc-cccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhh-hhhhH
Confidence            5666676677776666666544         1222 335568899998886   34568888888876533221 12224


Q ss_pred             CCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCc--------cCC--------------CCCCCHHHHHHHcCCHHHHHHHH
Q 045083          201 NEEQNTPLHEAVRLRRVDVVKILIKADPHVPY--------SAN--------------RNSETPLYMAVANGSAEIVAEIL  258 (556)
Q Consensus       201 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~--------~~~--------------~~g~t~L~~A~~~g~~~~v~~Ll  258 (556)
                      ...|.||||+|+.+.+.++|++|++.++++..        ..|              .-|+.||.+||..++.|++++|+
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl  260 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL  260 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence            56789999999999999999999998887521        111              13678999999999999999999


Q ss_pred             HcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCC-CCccccCCCCCHHHHHHHcCCHHHHHHHHhc-C--
Q 045083          259 QNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPH-VPYSANRNSETPLYMAAANGSVKIVAKILQK-C--  334 (556)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~--  334 (556)
                      +++++      ++.+|.+|+|.||..+..-..++.+.+++.|++ ....+|..|-|||-+|++-|+.++++.+++. .  
T Consensus       261 ~~gAd------~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~k~~  334 (782)
T KOG3676|consen  261 AHGAD------PNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERRKFT  334 (782)
T ss_pred             hcCCC------CCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHhhccc
Confidence            98875      578899999999999999889999999999887 2236788999999999999999999998887 1  


Q ss_pred             -----C------CCCCCCC--CCCcHHHHHHhc
Q 045083          335 -----P------SPAHEGP--DGKTALHAAVYT  354 (556)
Q Consensus       335 -----~------~~~~~d~--~g~t~L~~A~~~  354 (556)
                           +      +.+..|.  +-++.|.+.+..
T Consensus       335 ~W~YGpvtsslYpL~~iDT~~n~~SvLeivvyg  367 (782)
T KOG3676|consen  335 DWAYGPVTSSLYPLNSIDTIGNENSVLEIVVYG  367 (782)
T ss_pred             ceeecccccccccchhcccccchhhhhhhhhcC
Confidence                 1      1233333  456788887775

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.72  E-value=2.7e-15  Score=150.69  Aligned_cols=201  Identities=17%  Similarity=0.208  Sum_probs=164.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCChh---HHHHhhhcCCCCCcHhHHHHh---cCCHHHHHHHHhcCCCCCccC----
Q 045083          165 SETLLYMAVANGSAEIVAEILQNCPQSA---ARQMLEKTNEEQNTPLHEAVR---LRRVDVVKILIKADPHVPYSA----  234 (556)
Q Consensus       165 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~---~~~~~~~~~~~g~t~L~~A~~---~~~~~~v~~Ll~~~~~~~~~~----  234 (556)
                      .+.++..|...+..+....++.......   ....++.+...|.|.||.|..   .++.++++.|++..|.+.+..    
T Consensus       101 d~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~e  180 (782)
T KOG3676|consen  101 DRDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSE  180 (782)
T ss_pred             chhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhH
Confidence            3477888888888888887777653221   112344567889999999997   345699999999888765543    


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHH---HhhhcC--------------CCCCchhHHHHhcCCHHHHHHHH
Q 045083          235 NRNSETPLYMAVANGSAEIVAEILQNCPESAARQ---MLEKTN--------------EEQNTPLHEAVRLRSVDVAKILI  297 (556)
Q Consensus       235 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~---~~~~~~--------------~~g~t~Lh~A~~~g~~~~v~~Ll  297 (556)
                      ...|+||||+|+.+.+.++|+.|++.+++...+.   .+...|              ..|..||-.||..++.|++++|+
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl  260 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL  260 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence            3579999999999999999999999998654321   111112              24788999999999999999999


Q ss_pred             hcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCC--CCCCCCCCCcHHHHHHhcCChhHHHHHHHh
Q 045083          298 EADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPS--PAHEGPDGKTALHAAVYTYPTDILERVLIV  366 (556)
Q Consensus       298 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~--~~~~d~~g~t~L~~A~~~~~~~~~~~~~~~  366 (556)
                      ++|+|++ .+|.+|+|.||..+.+-..++...+|+.|++  ...+|+.|-|||.+|++.|..++.+.+++-
T Consensus       261 ~~gAd~~-aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  261 AHGADPN-AQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             hcCCCCC-ccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9999987 8899999999999999999999999999999  899999999999999999999998887765

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.69  E-value=2.5e-17  Score=144.47  Aligned_cols=115  Identities=24%  Similarity=0.291  Sum_probs=94.6

Q ss_pred             CccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCC
Q 045083          231 PYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRN  310 (556)
Q Consensus       231 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~  310 (556)
                      .+.-|..|.+|||+||+.|+..+++.|+.+|+.      ++..+....||||+|+..|+.++|+.|++..++++ ..|..
T Consensus        27 ln~gddhgfsplhwaakegh~aivemll~rgar------vn~tnmgddtplhlaaahghrdivqkll~~kadvn-avneh   99 (448)
T KOG0195|consen   27 LNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR------VNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVN-AVNEH   99 (448)
T ss_pred             cccccccCcchhhhhhhcccHHHHHHHHhcccc------cccccCCCCcchhhhhhcccHHHHHHHHHHhcccc-hhhcc
Confidence            466677888888888888888888888888863      56666677788888888888888888888888876 77888


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q 045083          311 SETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAV  352 (556)
Q Consensus       311 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~  352 (556)
                      |+|||||||..|...+.+-|+..|+.++..+++|.|||+.|-
T Consensus       100 gntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen  100 GNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             CCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhc
Confidence            888888888888888888888888888888888888888764

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.65  E-value=1.1e-15  Score=118.35  Aligned_cols=89  Identities=29%  Similarity=0.440  Sum_probs=72.1

Q ss_pred             HHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHc
Q 045083          242 LYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAAN  321 (556)
Q Consensus       242 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  321 (556)
                      ||+|++.|+.+++++|++.+.+      ++   . |+||||+|+.+|+.+++++|++.|++++ .+|..|+||||+|+.+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~------~~---~-~~~~l~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~   69 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGAD------IN---L-GNTALHYAAENGNLEIVKLLLENGADIN-SQDKNGNTALHYAAEN   69 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTST------TT---S-SSBHHHHHHHTTTHHHHHHHHHTTTCTT--BSTTSSBHHHHHHHT
T ss_pred             CHHHHHcCCHHHHHHHHHCcCC------CC---C-CCCHHHHHHHcCCHHHHHHHHHhccccc-ccCCCCCCHHHHHHHc
Confidence            6888888888888888887643      11   2 7889999999999999999999888875 6678899999999999


Q ss_pred             CCHHHHHHHHhcCCCCCCCC
Q 045083          322 GSVKIVAKILQKCPSPAHEG  341 (556)
Q Consensus       322 ~~~~~v~~Ll~~~~~~~~~d  341 (556)
                      |+.+++++|+++|++++.+|
T Consensus        70 ~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   70 GNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             THHHHHHHHHHTTT-TTSS-
T ss_pred             CCHHHHHHHHHcCCCCCCcC
Confidence            99999999998888888765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.62  E-value=9.9e-15  Score=121.29  Aligned_cols=120  Identities=28%  Similarity=0.514  Sum_probs=67.5

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCH
Q 045083          235 NRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETP  314 (556)
Q Consensus       235 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~  314 (556)
                      |.+|.||||+|+..++.+++++|++.+..      .+..+..|.+|+|.|+..++.+++++|++.++... ..+..|.||
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~------~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~-~~~~~~~~~   76 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGAD------VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVN-ARDKDGNTP   76 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCC------CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCH
Confidence            34455555555555555555555555542      13444555566666666666666666666554432 344555666


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHH
Q 045083          315 LYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE  361 (556)
Q Consensus       315 L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~  361 (556)
                      +|+|++.++.+++++|+.++.+.+..|..|.||+++|...++.++++
T Consensus        77 l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  123 (126)
T cd00204          77 LHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVK  123 (126)
T ss_pred             HHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHH
Confidence            66666666666666666555555555666666666666555544443

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.62  E-value=5.6e-16  Score=136.03  Aligned_cols=122  Identities=34%  Similarity=0.410  Sum_probs=108.1

Q ss_pred             HhhCccccccccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHH
Q 045083           68 LDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVV  147 (556)
Q Consensus        68 ~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v  147 (556)
                      ++....+++.-|..|.+|||+||+.||..+|+.|+.+|++                ++..|....||||+|+..|+-++|
T Consensus        20 ld~tehdln~gddhgfsplhwaakegh~aivemll~rgar----------------vn~tnmgddtplhlaaahghrdiv   83 (448)
T KOG0195|consen   20 LDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR----------------VNSTNMGDDTPLHLAAAHGHRDIV   83 (448)
T ss_pred             ecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccc----------------cccccCCCCcchhhhhhcccHHHH
Confidence            4455677888899999999999999999999999999988                566788889999999999999999


Q ss_pred             HHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHH
Q 045083          148 KILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAV  212 (556)
Q Consensus       148 ~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~  212 (556)
                      +.|++..++++ ..+..|.||||+||.-|+-.+.+-|+..++....      .+..|.|||..|-
T Consensus        84 qkll~~kadvn-avnehgntplhyacfwgydqiaedli~~ga~v~i------cnk~g~tpldkak  141 (448)
T KOG0195|consen   84 QKLLSRKADVN-AVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNI------CNKKGMTPLDKAK  141 (448)
T ss_pred             HHHHHHhcccc-hhhccCCCchhhhhhhcHHHHHHHHHhccceeee------cccCCCCchhhhc
Confidence            99999999988 8899999999999999999999999998876433      6889999998773

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.60  E-value=2.3e-14  Score=119.02  Aligned_cols=124  Identities=34%  Similarity=0.571  Sum_probs=103.8

Q ss_pred             cCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCc
Q 045083          200 TNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNT  279 (556)
Q Consensus       200 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t  279 (556)
                      .+.+|.||||.|+..++.+++++|++.+... ...+..|.+|+|.|+..++.++++.|++.+..      ++..+..|.|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~------~~~~~~~~~~   75 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD------VNARDKDGNT   75 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC------ccccCCCCCC
Confidence            4577889999999998889999998888774 67788888999999999999999999988752      3556678889


Q ss_pred             hhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHH
Q 045083          280 PLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKIL  331 (556)
Q Consensus       280 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  331 (556)
                      |+|+|+..++.+++++|++.+.+.. ..+..|.||+++|...++.+++++|+
T Consensus        76 ~l~~a~~~~~~~~~~~L~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          76 PLHLAARNGNLDVVKLLLKHGADVN-ARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9999999999999999999887765 56788899999999999998888753

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.58  E-value=1.6e-14  Score=111.78  Aligned_cols=86  Identities=28%  Similarity=0.461  Sum_probs=60.8

Q ss_pred             hHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhc
Q 045083          208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRL  287 (556)
Q Consensus       208 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~  287 (556)
                      ||.|++.|+.+++++|++.+.+...     |.||||+|+..|+.+++++|++.+.+      ++.+|..|+||||+|+.+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~-----~~~~l~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~   69 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL-----GNTALHYAAENGNLEIVKLLLENGAD------INSQDKNGNTALHYAAEN   69 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS-----SSBHHHHHHHTTTHHHHHHHHHTTTC------TT-BSTTSSBHHHHHHHT
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC-----CCCHHHHHHHcCCHHHHHHHHHhccc------ccccCCCCCCHHHHHHHc
Confidence            5777777777777777776655422     66777777777777777777777764      456667777788887777


Q ss_pred             CCHHHHHHHHhcCCCCC
Q 045083          288 RSVDVAKILIEADPHVP  304 (556)
Q Consensus       288 g~~~~v~~Ll~~~~~~~  304 (556)
                      |+.+++++|+++|++++
T Consensus        70 ~~~~~~~~Ll~~g~~~~   86 (89)
T PF12796_consen   70 GNLEIVKLLLEHGADVN   86 (89)
T ss_dssp             THHHHHHHHHHTTT-TT
T ss_pred             CCHHHHHHHHHcCCCCC
Confidence            77788888877777764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.53  E-value=1.2e-14  Score=104.92  Aligned_cols=91  Identities=21%  Similarity=0.232  Sum_probs=84.8

Q ss_pred             CHHHHHHHhcCCchHHHHhhhhhcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCC
Q 045083            2 DRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAK   81 (556)
Q Consensus         2 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   81 (556)
                      |..+.+++++|+++.|++...+|.+++.+ ..|++|||+|+..|+.           +++++++.+    +..++.+|+.
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~g~nVn~~-~ggR~plhyAAD~GQl-----------~ilefli~i----GA~i~~kDKy   66 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNEGLNVNEI-YGGRTPLHYAADYGQL-----------SILEFLISI----GANIQDKDKY   66 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHccccHHHH-hCCcccchHhhhcchH-----------HHHHHHHHh----ccccCCcccc
Confidence            45788999999999999999999999877 6999999999999999           999999766    7888999999


Q ss_pred             CChHHHHHHHhCcHHHHHHHHHHhccC
Q 045083           82 GDSPLHLAAKKGHTAIVEFLIVFANRQ  108 (556)
Q Consensus        82 g~tpLh~A~~~g~~~iv~~Ll~~~~~~  108 (556)
                      |.|||..|+..||.+.|++|++.|++.
T Consensus        67 gITPLLsAvwEGH~~cVklLL~~GAdr   93 (117)
T KOG4214|consen   67 GITPLLSAVWEGHRDCVKLLLQNGADR   93 (117)
T ss_pred             CCcHHHHHHHHhhHHHHHHHHHcCccc
Confidence            999999999999999999999999874

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.48  E-value=2.8e-13  Score=97.89  Aligned_cols=104  Identities=22%  Similarity=0.324  Sum_probs=90.8

Q ss_pred             CHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHH
Q 045083          240 TPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAA  319 (556)
Q Consensus       240 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~  319 (556)
                      .-+.+++++|..+-|+.....+-+      ++.. ..|++|||+|+-+|+.+++++|+..|++++ .+|+.|-|||--|+
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~n------Vn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~-~kDKygITPLLsAv   75 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLN------VNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQ-DKDKYGITPLLSAV   75 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHcccc------HHHH-hCCcccchHhhhcchHHHHHHHHHhccccC-CccccCCcHHHHHH
Confidence            346788899999999888877732      3443 489999999999999999999999999987 78999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q 045083          320 ANGSVKIVAKILQKCPSPAHEGPDGKTALHAA  351 (556)
Q Consensus       320 ~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A  351 (556)
                      ..|+.++|++||++|++-..+..+|.+.+..+
T Consensus        76 wEGH~~cVklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   76 WEGHRDCVKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHhhHHHHHHHHHcCcccceeCCCchhHHhhc
Confidence            99999999999999999999999998887654

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.43  E-value=6.8e-12  Score=116.37  Aligned_cols=129  Identities=28%  Similarity=0.394  Sum_probs=104.1

Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCC-----HHHHHHHHhcCC--CCC
Q 045083          232 YSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRS-----VDVAKILIEADP--HVP  304 (556)
Q Consensus       232 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~-----~~~v~~Ll~~~~--~~~  304 (556)
                      ...+..+.++++.++..+..+.+++++..+.+      ++.++..|.||||+|+..++     .++++.|++.|+  +..
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~  140 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGAD------VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVN  140 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCC------cccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCc
Confidence            44566678888888888888888888887764      35677888888888888888     888888888888  566


Q ss_pred             ccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHHHHHHh
Q 045083          305 YSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIV  366 (556)
Q Consensus       305 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~~~~~  366 (556)
                      ..+|..|+||||+|+..|+.++++.|+..+++++.++..|.|+++.|+..+..+++..+...
T Consensus       141 ~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         141 NLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             cccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhc
Confidence            67788888888888888888888888888888888888888888888888888777666543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.40  E-value=9.1e-12  Score=115.53  Aligned_cols=128  Identities=30%  Similarity=0.426  Sum_probs=109.1

Q ss_pred             cCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCC--hhHHHHHhhh
Q 045083          200 TNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGS-----AEIVAEILQNCP--ESAARQMLEK  272 (556)
Q Consensus       200 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~~~~--~~~~~~~~~~  272 (556)
                      .+..+.+++|.++..+..+++++++..+.+. +.++.+|.||||+|+..++     .++++.|++.+.  +     ..+.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~-----~~~~  142 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLD-----VNNL  142 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCC-----Cccc
Confidence            4556788899999888888888888888886 8888999999999999988     899999998887  3     2356


Q ss_pred             cCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 045083          273 TNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKC  334 (556)
Q Consensus       273 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  334 (556)
                      +|..|+||||+|+..|+.++++.|++.+++.. ..+..|.|+++.|+..++.++++.++..+
T Consensus       143 ~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         143 RDEDGNTPLHWAALNGDADIVELLLEAGADPN-SRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             cCCCCCchhHHHHHcCchHHHHHHHhcCCCCc-ccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            68889999999999999999999999988876 66888999999999999999998887765

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.38  E-value=5.5e-13  Score=92.02  Aligned_cols=56  Identities=34%  Similarity=0.491  Sum_probs=30.9

Q ss_pred             HHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q 045083          296 LIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAA  351 (556)
Q Consensus       296 Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A  351 (556)
                      |+++|+...+.+|..|.||||+|+.+|+.+++++|++.|++++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56677444457888999999999999999999999988999999999999999987

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.33  E-value=2.9e-12  Score=88.08  Aligned_cols=54  Identities=37%  Similarity=0.677  Sum_probs=44.7

Q ss_pred             CChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHH
Q 045083           82 GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILI  151 (556)
Q Consensus        82 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll  151 (556)
                      |+||||+||+.|+.+++++|++++.+                ++.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d----------------in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD----------------INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG----------------TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC----------------CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            68999999999999999999999876                5677999999999999999999999986

...

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.32  E-value=4.6e-12  Score=87.03  Aligned_cols=54  Identities=35%  Similarity=0.583  Sum_probs=35.5

Q ss_pred             CCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHH
Q 045083          277 QNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKIL  331 (556)
Q Consensus       277 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  331 (556)
                      |+||||+|++.|+.+++++|++.|.+++ .+|.+|+||||+|+.+|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din-~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADIN-AQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT--B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            5677777777777777777777777765 45777777777777777777777764

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.29  E-value=3e-11  Score=106.64  Aligned_cols=116  Identities=18%  Similarity=0.248  Sum_probs=86.9

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHH
Q 045083          239 ETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMA  318 (556)
Q Consensus       239 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A  318 (556)
                      .+||.-+...+..+-...|++.-.      .++..|..|.++|..|+..|+.++++.|++.|+|++..++..+.||||.|
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr------~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFA   86 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVR------QVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFA   86 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhh------hhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHH
Confidence            466777777777777777775521      35667777888888888888888888888888887777777778888888


Q ss_pred             HHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHH
Q 045083          319 AANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDIL  360 (556)
Q Consensus       319 ~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~  360 (556)
                      +..|+.++.+.|++.|+.+...|+-|+|+-++|+..|+.+.+
T Consensus        87 ALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV  128 (396)
T KOG1710|consen   87 ALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECV  128 (396)
T ss_pred             HHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHH
Confidence            888888888887888888777777888888888777766554

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.23  E-value=4.2e-11  Score=126.86  Aligned_cols=102  Identities=19%  Similarity=0.236  Sum_probs=68.3

Q ss_pred             HhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHh
Q 045083          207 PLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVR  286 (556)
Q Consensus       207 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~  286 (556)
                      .|+.|+..|+.+.++.|++.+++. +.+|.+|.||||+|+..|+.+++++|++.+++      ++.+|..|.||||+|+.
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad------vn~~d~~G~TpLh~A~~  157 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLEFGAD------PTLLDKDGKTPLELAEE  157 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHH
Confidence            466777777777777777777664 56677777777777777777777777777653      45566677777777777


Q ss_pred             cCCHHHHHHHHhc-------CCCCCccccCCCCCHHH
Q 045083          287 LRSVDVAKILIEA-------DPHVPYSANRNSETPLY  316 (556)
Q Consensus       287 ~g~~~~v~~Ll~~-------~~~~~~~~~~~g~t~L~  316 (556)
                      .|+.+++++|+++       +++.. ..+..|.+|+.
T Consensus       158 ~g~~~iv~~Ll~~~~~~~~~ga~~~-~~~~~g~~~~~  193 (664)
T PTZ00322        158 NGFREVVQLLSRHSQCHFELGANAK-PDSFTGKPPSL  193 (664)
T ss_pred             CCcHHHHHHHHhCCCcccccCCCCC-ccccCCCCccc
Confidence            7777777777766       44443 33445555554

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.19  E-value=1.8e-11  Score=84.47  Aligned_cols=54  Identities=30%  Similarity=0.511  Sum_probs=32.9

Q ss_pred             hhCccccccccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHH
Q 045083           69 DLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEA  138 (556)
Q Consensus        69 ~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A  138 (556)
                      +.++.+++..|..|.||||+||.+|+.++|++|++.+.+                ++.+|.+|+||||+|
T Consensus         3 ~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d----------------~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    3 EHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD----------------PNAKDKDGQTPLHYA   56 (56)
T ss_dssp             ---T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT------------------TT---TTS--HHHH-
T ss_pred             ccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC----------------CCCCcCCCCCHHHhC
Confidence            444677889999999999999999999999999988877                677999999999987

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.18  E-value=1.9e-10  Score=101.69  Aligned_cols=122  Identities=18%  Similarity=0.183  Sum_probs=106.3

Q ss_pred             ChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCccccc
Q 045083           83 DSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSAN  162 (556)
Q Consensus        83 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~  162 (556)
                      ..||.-+...|+.+-...|++.-..                ++..|..|.++|..|+..|+.++++.|++.|++++...+
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~----------------vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qh   76 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQ----------------VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQH   76 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhh----------------hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccc
Confidence            4688888888999988888865332                677899999999999999999999999999999998888


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhc
Q 045083          163 RNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKA  226 (556)
Q Consensus       163 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  226 (556)
                      ..+.|||++|+.+|+.++.+.|++.+.....      .+.-|+|+-..|+.-|+.++|..+-++
T Consensus        77 g~~YTpLmFAALSGn~dvcrllldaGa~~~~------vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   77 GTLYTPLMFAALSGNQDVCRLLLDAGARMYL------VNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             cccccHHHHHHHcCCchHHHHHHhccCcccc------ccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            8999999999999999999999999876433      688899999999999999998877554

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.14  E-value=7.2e-11  Score=112.60  Aligned_cols=118  Identities=20%  Similarity=0.209  Sum_probs=89.1

Q ss_pred             HHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCC
Q 045083           87 HLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSE  166 (556)
Q Consensus        87 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~  166 (556)
                      .-|+..|.+|+|+..+..-.+.                ..-|..|-|+||-|+..||.+||++|++.|.+++ ..|.+|.
T Consensus       555 LDaaLeGEldlVq~~i~ev~Dp----------------SqpNdEGITaLHNAiCaghyeIVkFLi~~ganVN-a~DSdGW  617 (752)
T KOG0515|consen  555 LDAALEGELDLVQRIIYEVTDP----------------SQPNDEGITALHNAICAGHYEIVKFLIEFGANVN-AADSDGW  617 (752)
T ss_pred             HhhhhcchHHHHHHHHHhhcCC----------------CCCCccchhHHhhhhhcchhHHHHHHHhcCCccc-CccCCCC
Confidence            3477788888888888766553                3457778888888888888888888888888887 7788888


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHH--HhcCCHHHHHHHHhc
Q 045083          167 TLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEA--VRLRRVDVVKILIKA  226 (556)
Q Consensus       167 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~  226 (556)
                      ||||+|+..++..+++.|++.++.....     .-.++.|+..-+  ...|...|.++|-.-
T Consensus       618 TPLHCAASCNnv~~ckqLVe~GaavfAs-----TlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  618 TPLHCAASCNNVPMCKQLVESGAAVFAS-----TLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             chhhhhhhcCchHHHHHHHhccceEEee-----ecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            8888888888888888888888655433     556667776554  356777888888753

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.12  E-value=2.2e-10  Score=121.41  Aligned_cols=86  Identities=23%  Similarity=0.282  Sum_probs=80.5

Q ss_pred             HHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCC
Q 045083           85 PLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRN  164 (556)
Q Consensus        85 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~  164 (556)
                      .|+.|+..|+.+.++.|++.|++                ++.+|..|+||||+|+..|+.+++++|++.|++++ ..|..
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gad----------------in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn-~~d~~  147 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGAD----------------PNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPT-LLDKD  147 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCC----------------CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCC
Confidence            58899999999999999999887                46678999999999999999999999999999987 78999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHh
Q 045083          165 SETLLYMAVANGSAEIVAEILQN  187 (556)
Q Consensus       165 g~t~L~~A~~~g~~~~v~~Ll~~  187 (556)
                      |.||||+|+..|+.+++++|+++
T Consensus       148 G~TpLh~A~~~g~~~iv~~Ll~~  170 (664)
T PTZ00322        148 GKTPLELAEENGFREVVQLLSRH  170 (664)
T ss_pred             CCCHHHHHHHCCcHHHHHHHHhC
Confidence            99999999999999999999998

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.10  E-value=2.7e-10  Score=108.77  Aligned_cols=103  Identities=25%  Similarity=0.313  Sum_probs=67.6

Q ss_pred             HHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCC
Q 045083          244 MAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGS  323 (556)
Q Consensus       244 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~  323 (556)
                      -|+..|.+++|+..+..-.+      ....+..|-|+||.|+..||.+||++|++.|++++ ..|.+||||||+|+..++
T Consensus       556 DaaLeGEldlVq~~i~ev~D------pSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVN-a~DSdGWTPLHCAASCNn  628 (752)
T KOG0515|consen  556 DAALEGELDLVQRIIYEVTD------PSQPNDEGITALHNAICAGHYEIVKFLIEFGANVN-AADSDGWTPLHCAASCNN  628 (752)
T ss_pred             hhhhcchHHHHHHHHHhhcC------CCCCCccchhHHhhhhhcchhHHHHHHHhcCCccc-CccCCCCchhhhhhhcCc
Confidence            35666777777766654432      23455667777777777777777777777777765 667777777777777777


Q ss_pred             HHHHHHHHhcCCCC-CCCCCCCCcHHHHHHh
Q 045083          324 VKIVAKILQKCPSP-AHEGPDGKTALHAAVY  353 (556)
Q Consensus       324 ~~~v~~Ll~~~~~~-~~~d~~g~t~L~~A~~  353 (556)
                      ..+++.|++.|+.+ ...-.++.||.+-+-.
T Consensus       629 v~~ckqLVe~GaavfAsTlSDmeTa~eKCee  659 (752)
T KOG0515|consen  629 VPMCKQLVESGAAVFASTLSDMETAAEKCEE  659 (752)
T ss_pred             hHHHHHHHhccceEEeeecccccchhhhcch
Confidence            77777777776653 3344556666655543

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.72  E-value=1.3e-08  Score=102.61  Aligned_cols=85  Identities=19%  Similarity=0.140  Sum_probs=74.2

Q ss_pred             hhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q 045083          270 LEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALH  349 (556)
Q Consensus       270 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~  349 (556)
                      .+.+|..|+|+||+|+..+..++++||+++|.++.-.-...|+||||-|+.+|+.+++..||.+|.....+|++|..||+
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            56788899999999999999999999999999987333367999999999999999999999999999999999999999


Q ss_pred             HHHhc
Q 045083          350 AAVYT  354 (556)
Q Consensus       350 ~A~~~  354 (556)
                      +....
T Consensus       125 ~~~r~  129 (1267)
T KOG0783|consen  125 FLSRV  129 (1267)
T ss_pred             HHhhc
Confidence            88773

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.70  E-value=2e-08  Score=95.05  Aligned_cols=88  Identities=26%  Similarity=0.357  Sum_probs=81.6

Q ss_pred             HHHHHHhcCCchHHHHhhhhhcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCCCC
Q 045083            4 KLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKGD   83 (556)
Q Consensus         4 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~   83 (556)
                      .+++|++.||+..++++.-.|.|.+..|.+.+|+||+|+.-|+.           +++|+|   ++.+..+.+.+|..|+
T Consensus       509 ~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v-----------~v~kfl---~~~~kv~~~~kDRw~r  574 (622)
T KOG0506|consen  509 NVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHV-----------EVVKFL---LNACKVDPDPKDRWGR  574 (622)
T ss_pred             hhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCce-----------eHHHHH---HHHHcCCCChhhccCC
Confidence            47899999999999999999999999999999999999999999           999999   5566777788999999


Q ss_pred             hHHHHHHHhCcHHHHHHHHHHh
Q 045083           84 SPLHLAAKKGHTAIVEFLIVFA  105 (556)
Q Consensus        84 tpLh~A~~~g~~~iv~~Ll~~~  105 (556)
                      |||.-|...+|.+++++|-+.-
T Consensus       575 tPlDdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  575 TPLDDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             CcchHhHhcCcHHHHHHHHHHh
Confidence            9999999999999999997653

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.64  E-value=1.3e-07  Score=90.16  Aligned_cols=83  Identities=20%  Similarity=0.279  Sum_probs=66.7

Q ss_pred             hhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhH
Q 045083          280 PLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDI  359 (556)
Q Consensus       280 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~  359 (556)
                      -||..++.|+.+..=.|+..|++.+.-....|.||||+|++.|+.--+++|+.+|++++..|.+|.||+.||-..|+-++
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            47788888888888888888888876666788888888888888888888888888888888888888888888777655


Q ss_pred             HHH
Q 045083          360 LER  362 (556)
Q Consensus       360 ~~~  362 (556)
                      .++
T Consensus       216 aeR  218 (669)
T KOG0818|consen  216 AER  218 (669)
T ss_pred             HHH
Confidence            433

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.61  E-value=4.6e-08  Score=94.47  Aligned_cols=121  Identities=21%  Similarity=0.281  Sum_probs=101.9

Q ss_pred             CHHHHHHHhcCCchHHHHhhhhhcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCc-cccccccC
Q 045083            2 DRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCP-SLLFQANA   80 (556)
Q Consensus         2 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~   80 (556)
                      ...|..|+..+|+-.++....+|-+...++++..|.||+|+..|+-           |++++++   +..| .+++..|.
T Consensus       867 seeil~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~-----------eivkyil---dh~p~elld~~de  932 (1004)
T KOG0782|consen  867 SEEILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNG-----------EIVKYIL---DHGPSELLDMADE  932 (1004)
T ss_pred             cHHHHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCCh-----------HHHHHHH---hcCCHHHHHHHhh
Confidence            3467888999998888888888888888888899999999999999           9999994   4444 46677888


Q ss_pred             CCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHh
Q 045083           81 KGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIK  152 (556)
Q Consensus        81 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  152 (556)
                      .|.|+||-|+..++-.+.++|++.|+.                +..+|..|.||-..|-..|+.++.-||-.
T Consensus       933 ~get~lhkaa~~~~r~vc~~lvdagas----------------l~ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  933 TGETALHKAACQRNRAVCQLLVDAGAS----------------LRKTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             hhhHHHHHHHHhcchHHHHHHHhcchh----------------heecccCCCChHHHHHhcCCchHHHHHhh
Confidence            999999999999999999999998886                66788889999888888888888888865

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.60  E-value=2.3e-07  Score=89.77  Aligned_cols=92  Identities=26%  Similarity=0.377  Sum_probs=47.8

Q ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCC
Q 045083          233 SANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSE  312 (556)
Q Consensus       233 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~  312 (556)
                      .++.+..+.||+|+..|+-++|++++++++..    +++..|..|.|+||.|+..++..+.++|++.|+.+. ..|..|.
T Consensus       894 ~~~~~~~sllh~a~~tg~~eivkyildh~p~e----lld~~de~get~lhkaa~~~~r~vc~~lvdagasl~-ktd~kg~  968 (1004)
T KOG0782|consen  894 IQGPDHCSLLHYAAKTGNGEIVKYILDHGPSE----LLDMADETGETALHKAACQRNRAVCQLLVDAGASLR-KTDSKGK  968 (1004)
T ss_pred             eeCcchhhHHHHHHhcCChHHHHHHHhcCCHH----HHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhhe-ecccCCC
Confidence            44455555555555555555555555555432    234444555555555555555555555555555543 4455555


Q ss_pred             CHHHHHHHcCCHHHHHH
Q 045083          313 TPLYMAAANGSVKIVAK  329 (556)
Q Consensus       313 t~L~~A~~~~~~~~v~~  329 (556)
                      ||-.-|-+.|..+...+
T Consensus       969 tp~eraqqa~d~dlaay  985 (1004)
T KOG0782|consen  969 TPQERAQQAGDPDLAAY  985 (1004)
T ss_pred             ChHHHHHhcCCchHHHH
Confidence            55555555555555444

>PF13606 Ank_3: Ankyrin repeat

Probab=98.58  E-value=9e-08  Score=55.87  Aligned_cols=27  Identities=37%  Similarity=0.551  Sum_probs=14.2

Q ss_pred             CCchhHHHHhcCCHHHHHHHHhcCCCC
Q 045083          277 QNTPLHEAVRLRSVDVAKILIEADPHV  303 (556)
Q Consensus       277 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~  303 (556)
                      |+||||+|+.+|+.|++++|+++|+++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            455555555555555555555555443

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.54  E-value=5e-08  Score=98.57  Aligned_cols=90  Identities=17%  Similarity=0.290  Sum_probs=80.0

Q ss_pred             HhhCccccccccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhc-cCCCcHhHHHHhcCCHHH
Q 045083           68 LDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTN-EEQNTPLHEAVRLRSVDV  146 (556)
Q Consensus        68 ~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~t~Lh~A~~~g~~~~  146 (556)
                      ...|....+..|..|+|+||+|+..|..++++||+.+|.+.                ..+| +.|.||||.|+..|++++
T Consensus        38 ~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv----------------~vqD~ESG~taLHRaiyyG~idc  101 (1267)
T KOG0783|consen   38 EKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDV----------------FVQDEESGYTALHRAIYYGNIDC  101 (1267)
T ss_pred             HHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCcee----------------eeccccccchHhhHhhhhchHHH
Confidence            34567778899999999999999999999999999999873                3344 569999999999999999


Q ss_pred             HHHHHhcCCCCcccccCCCCcHHHHHHH
Q 045083          147 VKILIKADPHVSYSANRNSETLLYMAVA  174 (556)
Q Consensus       147 v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  174 (556)
                      +-.|+.+|..+. ..|+.|.+||.+-++
T Consensus       102 a~lLL~~g~SL~-i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  102 ASLLLSKGRSLR-IKDKEGLSPLQFLSR  128 (1267)
T ss_pred             HHHHHhcCCceE-EecccCCCHHHHHhh
Confidence            999999998876 899999999998776

>PF13606 Ank_3: Ankyrin repeat

Probab=98.54  E-value=1.1e-07  Score=55.48  Aligned_cols=29  Identities=38%  Similarity=0.598  Sum_probs=24.1

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCCC
Q 045083          310 NSETPLYMAAANGSVKIVAKILQKCPSPA  338 (556)
Q Consensus       310 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~  338 (556)
                      +|+||||+|+++|+.+++++|+++|+++|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            47888888888888888888888888776

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.51  E-value=1.8e-07  Score=56.39  Aligned_cols=31  Identities=29%  Similarity=0.350  Sum_probs=18.6

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCCCCCC
Q 045083          311 SETPLYMAAANGSVKIVAKILQKCPSPAHEG  341 (556)
Q Consensus       311 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d  341 (556)
                      |+||||+|+.+|+.+++++|+++|++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            5566666666666666666666666655554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.49  E-value=1.3e-07  Score=89.72  Aligned_cols=90  Identities=23%  Similarity=0.220  Sum_probs=64.3

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHH
Q 045083          236 RNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPL  315 (556)
Q Consensus       236 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L  315 (556)
                      .++..++++|++.|++..++.+.-.+.      +++.+|.+.+|+||.|+..|+++++++|++......+.+|..|+|||
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~------D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPl  577 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGM------DLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPL  577 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcc------cccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcc
Confidence            345567777777777777777766554      35667777777777777777777777777766655566777777777


Q ss_pred             HHHHHcCCHHHHHHHH
Q 045083          316 YMAAANGSVKIVAKIL  331 (556)
Q Consensus       316 ~~A~~~~~~~~v~~Ll  331 (556)
                      +-|...++.+++++|-
T Consensus       578 DdA~~F~h~~v~k~L~  593 (622)
T KOG0506|consen  578 DDAKHFKHKEVVKLLE  593 (622)
T ss_pred             hHhHhcCcHHHHHHHH
Confidence            7777777777777743

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.36  E-value=6.6e-06  Score=84.68  Aligned_cols=132  Identities=17%  Similarity=0.294  Sum_probs=102.8

Q ss_pred             CCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCccc
Q 045083           81 KGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYS  160 (556)
Q Consensus        81 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~  160 (556)
                      .+.--...|+..|+.-.|+..++.......+            ++..|.-|+++|+.|+.+.+.+++++|++.+.+.   
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~ln------------inc~d~lGr~al~iai~nenle~~eLLl~~~~~~---   88 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLN------------INCRDPLGRLALHIAIDNENLELQELLLDTSSEE---   88 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccc------------hhccChHhhhceecccccccHHHHHHHhcCcccc---
Confidence            3445677899999999999999876542111            5778999999999999999999999999865443   


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHh----hhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCc
Q 045083          161 ANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQML----EKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPY  232 (556)
Q Consensus       161 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~----~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~  232 (556)
                           ..+|.+|+..|..+.|+.++.+..........    ...-..+-||+..|+..++.|+++.|++++..++.
T Consensus        89 -----gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   89 -----GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             -----chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence                 57899999999999999999986443211100    00223467999999999999999999999988643

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.32  E-value=9.8e-07  Score=53.16  Aligned_cols=29  Identities=31%  Similarity=0.527  Sum_probs=24.9

Q ss_pred             CCCchhHHHHhcCCHHHHHHHHhcCCCCC
Q 045083          276 EQNTPLHEAVRLRSVDVAKILIEADPHVP  304 (556)
Q Consensus       276 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  304 (556)
                      +|+||||+|+..|+.+++++|+++|++++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~   29 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADIN   29 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence            47888999999899999999998888875

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.25  E-value=2.9e-06  Score=82.35  Aligned_cols=87  Identities=28%  Similarity=0.321  Sum_probs=47.3

Q ss_pred             HhHHHHhcCCHHHHHH-HHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHH
Q 045083          207 PLHEAVRLRRVDVVKI-LIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAV  285 (556)
Q Consensus       207 ~L~~A~~~~~~~~v~~-Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~  285 (556)
                      |+|.++.....+-... +...-.......|..|.||||+|+..|+.+.++.|+..+++      +..+|+.|++|||.|+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad------v~~kN~~gWs~L~EAv   96 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD------VSIKNNEGWSPLHEAV   96 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC------ccccccccccHHHHHH
Confidence            4666655544433333 22222223345556666666666666666666666666553      3355566666666666


Q ss_pred             hcCCHHHHHHHHhc
Q 045083          286 RLRSVDVAKILIEA  299 (556)
Q Consensus       286 ~~g~~~~v~~Ll~~  299 (556)
                      ..|+.+++..++.+
T Consensus        97 ~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   97 STGNEQIITEVLRH  110 (560)
T ss_pred             HcCCHHHHHHHHHH
Confidence            66666666655554

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.23  E-value=1.9e-06  Score=83.48  Aligned_cols=90  Identities=23%  Similarity=0.364  Sum_probs=73.9

Q ss_pred             eeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhh
Q 045083           36 TVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERG  115 (556)
Q Consensus        36 t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~  115 (556)
                      -|+|.++.....           +-....+. .+ -...++.+|..|.||||+|+..||.+.++.|+..+++        
T Consensus        22 ~~lh~~~~~~~~-----------~sl~~el~-~~-~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad--------   80 (560)
T KOG0522|consen   22 KPLHWAVVTTDS-----------DSLEQELL-AK-VSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD--------   80 (560)
T ss_pred             cccchhhhccch-----------hhHHHHHh-hh-hhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC--------
Confidence            358888887776           44444332 22 3456788999999999999999999999999999988        


Q ss_pred             hhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcC
Q 045083          116 VESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKAD  154 (556)
Q Consensus       116 ~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~  154 (556)
                              +..+|..|++|||.|+..|+.+++..++.+.
T Consensus        81 --------v~~kN~~gWs~L~EAv~~g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   81 --------VSIKNNEGWSPLHEAVSTGNEQIITEVLRHL  111 (560)
T ss_pred             --------ccccccccccHHHHHHHcCCHHHHHHHHHHh
Confidence                    5678999999999999999999998888753

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.20  E-value=5.6e-06  Score=80.83  Aligned_cols=92  Identities=24%  Similarity=0.219  Sum_probs=71.8

Q ss_pred             HHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHc
Q 045083          242 LYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAAN  321 (556)
Q Consensus       242 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  321 (556)
                      |..|+...++..+-.||.++.....  .-...+.+|+|+||+|+..|++.+.++|+-+|.|+. .+|..|+|+|.||-..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~--~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~-~rda~g~t~l~yar~a  704 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEV--NETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVM-ARDAHGRTALFYARQA  704 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhh--hccccCCCCcchhhhhhhhcchhHHHHHHHhCccce-ecccCCchhhhhHhhc
Confidence            4556777777788888888764321  112334667899999999999999999998888875 7888999999999999


Q ss_pred             CCHHHHHHHHhcCCC
Q 045083          322 GSVKIVAKILQKCPS  336 (556)
Q Consensus       322 ~~~~~v~~Ll~~~~~  336 (556)
                      |..+++..|+++|..
T Consensus       705 ~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  705 GSQECIDVLLQYGCP  719 (749)
T ss_pred             ccHHHHHHHHHcCCC
Confidence            999999998888754

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.18  E-value=6.3e-06  Score=78.93  Aligned_cols=94  Identities=16%  Similarity=0.205  Sum_probs=83.6

Q ss_pred             hhccCCCc------HhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhh
Q 045083          126 MTNEEQNT------PLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEK  199 (556)
Q Consensus       126 ~~~~~g~t------~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~  199 (556)
                      .+|.+|-+      -||.+++.|+.++.-.|+..|++.++.....|.||||.|++.|+..-++.|+-+|+++..      
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a------  195 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGA------  195 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCC------
Confidence            34555544      489999999999999999999999999999999999999999999999999999988655      


Q ss_pred             cCCCCCcHhHHHHhcCCHHHHHHHHh
Q 045083          200 TNEEQNTPLHEAVRLRRVDVVKILIK  225 (556)
Q Consensus       200 ~~~~g~t~L~~A~~~~~~~~v~~Ll~  225 (556)
                      .|.+|.||+.+|-..|+-++.+-|++
T Consensus       196 ~d~~GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  196 QDSSGMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CCCCCCcHHHHHHhcCchHHHHHHHH
Confidence            79999999999999999988877775

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.16  E-value=6.7e-06  Score=84.64  Aligned_cols=133  Identities=20%  Similarity=0.227  Sum_probs=99.9

Q ss_pred             HHHHHHHhcCCchHHHHhhhh----hcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccc
Q 045083            3 RKLYEAAAKGDIEPFREIARD----ELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQA   78 (556)
Q Consensus         3 ~~L~~A~~~g~~~~v~~Ll~~----g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   78 (556)
                      .....|++.||...|++.++.    ..++|..|.-|+++||.|+.+.+.           |+.+++++.    +...   
T Consensus        27 ~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenl-----------e~~eLLl~~----~~~~---   88 (822)
T KOG3609|consen   27 KGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENL-----------ELQELLLDT----SSEE---   88 (822)
T ss_pred             HHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccH-----------HHHHHHhcC----cccc---
Confidence            456789999999999999987    267788999999999999999999           999999553    1111   


Q ss_pred             cCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCc
Q 045083           79 NAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVS  158 (556)
Q Consensus        79 ~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  158 (556)
                          ..+|.+|+..|..+.|+.++.+..........      .+.-...-..+-|||.+|+..++.|+++.|+++|..+.
T Consensus        89 ----gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~------~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   89 ----GDALLLAIAVGSVPLVELLLVHFVDAPYLERS------GDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             ----chHHHHHHHHHHHHHHHHHHhcccccchhccc------cccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence                45899999999999999999875442110000      00001123457899999999999999999999988876


Q ss_pred             ccccC
Q 045083          159 YSANR  163 (556)
Q Consensus       159 ~~~~~  163 (556)
                      ...+.
T Consensus       159 ~PH~~  163 (822)
T KOG3609|consen  159 IPHDI  163 (822)
T ss_pred             CCccc
Confidence            44443

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.93  E-value=2.6e-05  Score=76.29  Aligned_cols=91  Identities=23%  Similarity=0.255  Sum_probs=66.6

Q ss_pred             HHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCC
Q 045083           86 LHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNS  165 (556)
Q Consensus        86 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g  165 (556)
                      |.-|+...+...+-.|+-+|.....+            -...+.+|+|+||+|++.|+..+.++|+=.|.+.. ..|.+|
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~------------~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~-~rda~g  694 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVN------------ETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVM-ARDAHG  694 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhh------------ccccCCCCcchhhhhhhhcchhHHHHHHHhCccce-ecccCC
Confidence            45567777777777777777653321            12345667888888888888888888887777775 778888


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCC
Q 045083          166 ETLLYMAVANGSAEIVAEILQNCP  189 (556)
Q Consensus       166 ~t~L~~A~~~g~~~~v~~Ll~~~~  189 (556)
                      .|+|.+|-+.|..|++..|++++-
T Consensus       695 ~t~l~yar~a~sqec~d~llq~gc  718 (749)
T KOG0705|consen  695 RTALFYARQAGSQECIDVLLQYGC  718 (749)
T ss_pred             chhhhhHhhcccHHHHHHHHHcCC
Confidence            888888888888888888888763

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.78  E-value=4.9e-05  Score=70.64  Aligned_cols=73  Identities=22%  Similarity=0.264  Sum_probs=61.3

Q ss_pred             hHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccC
Q 045083           84 SPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANR  163 (556)
Q Consensus        84 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~  163 (556)
                      --|..||+.|+.+.|++|++.|..                ++..|+....||.+|+..||.++|++|+++|+-.. ....
T Consensus        38 ~elceacR~GD~d~v~~LVetgvn----------------VN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~-rdtf  100 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVN----------------VNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICS-RDTF  100 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCC----------------cchhhcccccHHHHHHHcCcHHHHHHHHHcCCccc-cccc
Confidence            358899999999999999997766                67789999999999999999999999999998875 4445


Q ss_pred             CCCcHHHHHH
Q 045083          164 NSETLLYMAV  173 (556)
Q Consensus       164 ~g~t~L~~A~  173 (556)
                      .|..+++-|.
T Consensus       101 ~G~RC~YgaL  110 (516)
T KOG0511|consen  101 DGDRCHYGAL  110 (516)
T ss_pred             Ccchhhhhhh
Confidence            5666655443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.73  E-value=3e-05  Score=82.37  Aligned_cols=83  Identities=27%  Similarity=0.352  Sum_probs=76.8

Q ss_pred             CCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhc
Q 045083          275 EEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYT  354 (556)
Q Consensus       275 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~  354 (556)
                      ..|.|+||.|+..|..-++++|++.|++++ ..|..|+||+|.+...|+...+..++.+|++++..|.+|++|+++|...
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn-~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVN-ALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcch-hhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhh
Confidence            467999999999999999999999999975 8899999999999999999999999999999999999999999999876


Q ss_pred             CChh
Q 045083          355 YPTD  358 (556)
Q Consensus       355 ~~~~  358 (556)
                      .+.+
T Consensus       733 ~~~d  736 (785)
T KOG0521|consen  733 ANAD  736 (785)
T ss_pred             cccc
Confidence            4443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.67  E-value=3.1e-05  Score=81.65  Aligned_cols=131  Identities=18%  Similarity=0.096  Sum_probs=84.9

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHh-CCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCC
Q 045083          161 ANRNSETLLYMAVANGSAEIVAEILQN-CPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSE  239 (556)
Q Consensus       161 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~  239 (556)
                      ..-.|.+.+|+++..++.-.++.+++- +.....      .+.+|...+|.+ ..++.+.+-+++.....-.+.+|.+|+
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~e------ld~d~qgV~hfc-a~lg~ewA~ll~~~~~~ai~i~D~~G~  642 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLE------LDRDGQGVIHFC-AALGYEWAFLPISADGVAIDIRDRNGW  642 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccCchh------hcccCCChhhHh-hhcCCceeEEEEeecccccccccCCCC
Confidence            344577888888888888888887774 322221      566777777773 444556666666555555577788888


Q ss_pred             CHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHh
Q 045083          240 TPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE  298 (556)
Q Consensus       240 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  298 (556)
                      ||||+|+..|+..++..|.+.+.+.............|.|+-..|-.+|+..+.-+|-+
T Consensus       643 tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  643 TPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             cccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            88888888888888888887665443211222333456777777777777666666554

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.64  E-value=0.00011  Score=61.87  Aligned_cols=68  Identities=21%  Similarity=0.156  Sum_probs=48.8

Q ss_pred             ccccccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhc
Q 045083           74 LLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKA  153 (556)
Q Consensus        74 ~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  153 (556)
                      .++.+|..|+||+.+|+..|+.+.|.||+.+|...               +...|..|.+++.+|-+.|..+++..|-+.
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~---------------vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAF---------------VGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCccc---------------ccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            45677777777877777777777777777777321               456677777777777777777777777775


Q ss_pred             CCC
Q 045083          154 DPH  156 (556)
Q Consensus       154 ~~~  156 (556)
                      ..+
T Consensus        69 ~~e   71 (223)
T KOG2384|consen   69 DRE   71 (223)
T ss_pred             hcc
Confidence            443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.62  E-value=9.6e-05  Score=68.75  Aligned_cols=76  Identities=24%  Similarity=0.293  Sum_probs=62.1

Q ss_pred             CcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHH
Q 045083          132 NTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEA  211 (556)
Q Consensus       132 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A  211 (556)
                      .--|.+||+.|+.+.|++|++.|.+++ ..|+...+||++|+..||.++|++|+++|+-...      ...+|..+ |++
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN-~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~r------dtf~G~RC-~Yg  108 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVN-AVDRFDSSPLYLASLCGHEDVVKLLLENGAICSR------DTFDGDRC-HYG  108 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcc-hhhcccccHHHHHHHcCcHHHHHHHHHcCCcccc------cccCcchh-hhh
Confidence            344789999999999999999999998 8899999999999999999999999999976432      34455554 455


Q ss_pred             HhcC
Q 045083          212 VRLR  215 (556)
Q Consensus       212 ~~~~  215 (556)
                      +.+.
T Consensus       109 aLnd  112 (516)
T KOG0511|consen  109 ALND  112 (516)
T ss_pred             hhhH
Confidence            5443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.61  E-value=0.00016  Score=60.89  Aligned_cols=64  Identities=14%  Similarity=0.094  Sum_probs=34.4

Q ss_pred             hhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhc
Q 045083          270 LEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQK  333 (556)
Q Consensus       270 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  333 (556)
                      ++.+|..|+||++.|+..|+.+.+.+|+.+|.......|..|.+++.+|-+.|..+++..|.+.
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            3444555555555555555555555555555333334555555555555555555555555444

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.56  E-value=3.6e-05  Score=81.19  Aligned_cols=125  Identities=15%  Similarity=0.008  Sum_probs=88.8

Q ss_pred             HHHHHHhcCCchHHHHhhhh-hcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCCC
Q 045083            4 KLYEAAAKGDIEPFREIARD-ELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKG   82 (556)
Q Consensus         4 ~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g   82 (556)
                      -+|.++..+..-.++.+++. |...+..|.+|...+|+++ .++.           +..-.+   +...+..++.+|..|
T Consensus       577 llhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~lg~-----------ewA~ll---~~~~~~ai~i~D~~G  641 (975)
T KOG0520|consen  577 LLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-ALGY-----------EWAFLP---ISADGVAIDIRDRNG  641 (975)
T ss_pred             HHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhh-hcCC-----------ceeEEE---EeecccccccccCCC
Confidence            36778888888888888886 6666677788888888844 4445           555555   555677788889999


Q ss_pred             ChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhc
Q 045083           83 DSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKA  153 (556)
Q Consensus        83 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  153 (556)
                      +||||+|+..|+..++.-|++.+++.....+          ....+..|.|+-..|-.+|+..+.-+|-+.
T Consensus       642 ~tpL~wAa~~G~e~l~a~l~~lga~~~~~td----------ps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  642 WTPLHWAAFRGREKLVASLIELGADPGAVTD----------PSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             CcccchHhhcCHHHHHHHHHHhccccccccC----------CCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            9999999999999999999888876542211          122344567777777777776666666553

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.50  E-value=9.4e-05  Score=78.67  Aligned_cols=84  Identities=24%  Similarity=0.311  Sum_probs=50.0

Q ss_pred             CCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhH
Q 045083          130 EQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLH  209 (556)
Q Consensus       130 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~  209 (556)
                      .|.|+||.|+..|..-++++|++.|++++ ..|..|.+|+|.+...|+...+..++++++....      .+.+|.++++
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn-~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a------~~~~~~~~l~  727 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVN-ALDSKGRTPLHHATASGHTSIACLLLKRGADPNA------FDPDGKLPLD  727 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcch-hhhccCCCcchhhhhhcccchhhhhccccccccc------cCccCcchhh
Confidence            45666666666666666666666666644 5566666666666666666666666665555433      4666666666


Q ss_pred             HHHhcCCHHHH
Q 045083          210 EAVRLRRVDVV  220 (556)
Q Consensus       210 ~A~~~~~~~~v  220 (556)
                      +|....+.+++
T Consensus       728 ~a~~~~~~d~~  738 (785)
T KOG0521|consen  728 IAMEAANADIV  738 (785)
T ss_pred             HHhhhccccHH
Confidence            66544443333

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.51  E-value=0.0032  Score=61.15  Aligned_cols=67  Identities=22%  Similarity=0.192  Sum_probs=55.8

Q ss_pred             CCHHHHHHHHhcCCCCCcc-----ccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhc
Q 045083          288 RSVDVAKILIEADPHVPYS-----ANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYT  354 (556)
Q Consensus       288 g~~~~v~~Ll~~~~~~~~~-----~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~  354 (556)
                      .-...+++|.+++...+..     .+..-.|+||+|+.+|..++|.+||+.|.|+..+|..|+||.+++...
T Consensus       402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~nk  473 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSANK  473 (591)
T ss_pred             CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccccH
Confidence            3467888888887776432     234467999999999999999999999999999999999999998743

>smart00248 ANK ankyrin repeats

Probab=96.18  E-value=0.011  Score=33.41  Aligned_cols=25  Identities=32%  Similarity=0.533  Sum_probs=13.2

Q ss_pred             CCchhHHHHhcCCHHHHHHHHhcCC
Q 045083          277 QNTPLHEAVRLRSVDVAKILIEADP  301 (556)
Q Consensus       277 g~t~Lh~A~~~g~~~~v~~Ll~~~~  301 (556)
                      |.||+|+|+..++.++++.|++.+.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            4455555555555555555555444

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.09  E-value=0.011  Score=33.43  Aligned_cols=27  Identities=37%  Similarity=0.565  Sum_probs=17.6

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCC
Q 045083          311 SETPLYMAAANGSVKIVAKILQKCPSP  337 (556)
Q Consensus       311 g~t~L~~A~~~~~~~~v~~Ll~~~~~~  337 (556)
                      |.||+|+|+..++.++++.|++.+.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            566667776666667666666665543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.05  E-value=0.056  Score=45.94  Aligned_cols=44  Identities=16%  Similarity=0.055  Sum_probs=28.6

Q ss_pred             hHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHH
Q 045083          281 LHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKIL  331 (556)
Q Consensus       281 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  331 (556)
                      |..|+..|-...+-..++.|.+++       .++|-.|+++++.+++.+++
T Consensus       147 l~~a~~kgll~F~letlkygg~~~-------~~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYGGNVD-------IIVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcCCccc-------HHHHHHHHHhhHHHHHHHhh
Confidence            556666677776666667666653       15667777777777666654

These proteins may be involved in promoting survival of infected macrophages [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.56  E-value=0.24  Score=42.22  Aligned_cols=135  Identities=18%  Similarity=0.144  Sum_probs=78.0

Q ss_pred             HhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHh
Q 045083          134 PLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVR  213 (556)
Q Consensus       134 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~  213 (556)
                      .+..|++.+..++++..-+..   . ..-...++.+..||+..+.|+|+|+-++-.           -.+-.+...+|..
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L---~-~~~~~~q~LFElAC~~qkydiV~WI~qnL~-----------i~~~~~iFdIA~~  113 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDL---E-NERYLNQELFELACEEQKYDIVKWIGQNLH-----------IYNPEDIFDIAFA  113 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHh---h-cchhHHHHHHHHHHHHccccHHHHHhhccC-----------CCCchhhhhhhhh
Confidence            355677777777777766521   1 111345667777888888888888855432           2333445667777


Q ss_pred             cCCHHHHH----HHHhcCCCCCccCCCCC----CCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHH
Q 045083          214 LRRVDVVK----ILIKADPHVPYSANRNS----ETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAV  285 (556)
Q Consensus       214 ~~~~~~v~----~Ll~~~~~~~~~~~~~g----~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~  285 (556)
                      ..+.++..    .+.++....   .+.+-    ..-|..|+..|.+..+...+++|..            ...++|-.|+
T Consensus       114 ~kDlsLyslGY~l~~~~~~~~---~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~------------~~~~vls~Av  178 (192)
T PF03158_consen  114 KKDLSLYSLGYKLLFNRMMSE---HNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGN------------VDIIVLSQAV  178 (192)
T ss_pred             ccchhHHHHHHHHHHhhcccc---cccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCc------------ccHHHHHHHH
Confidence            77666532    122221110   01111    1125667777777777777777642            1227777888


Q ss_pred             hcCCHHHHHHHHh
Q 045083          286 RLRSVDVAKILIE  298 (556)
Q Consensus       286 ~~g~~~~v~~Ll~  298 (556)
                      ++++..++.+++.
T Consensus       179 ~ynhRkIL~yfi~  191 (192)
T PF03158_consen  179 KYNHRKILDYFIR  191 (192)
T ss_pred             HhhHHHHHHHhhc
Confidence            8877777777664

These proteins may be involved in promoting survival of infected macrophages [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.64  E-value=0.03  Score=54.69  Aligned_cols=44  Identities=20%  Similarity=0.188  Sum_probs=39.3

Q ss_pred             CCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHH
Q 045083          275 EEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAA  319 (556)
Q Consensus       275 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~  319 (556)
                      ..--|+||+|+..|..++|.+|++.|.|.. .+|..|+||..++.
T Consensus       428 ~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~-~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  428 YLTSTFLHYAAAQGARKCVKYFLEEGCDPS-TKDGAGRTPYSLSA  471 (591)
T ss_pred             cccchHHHHHHhcchHHHHHHHHHhcCCch-hcccCCCCcccccc
Confidence            345689999999999999999999997765 88999999999887

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.54  E-value=0.31  Score=42.85  Aligned_cols=47  Identities=17%  Similarity=0.076  Sum_probs=29.1

Q ss_pred             CHHHHHHHHhcCCCCCc---cccCCCCCHHHHHHHcCCHHHHHHHHhcCC
Q 045083          289 SVDVAKILIEADPHVPY---SANRNSETPLYMAAANGSVKIVAKILQKCP  335 (556)
Q Consensus       289 ~~~~v~~Ll~~~~~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~  335 (556)
                      +..++++.+++|-...+   .+-..|.|-|.-|+++++.|++..||++|+
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            45566666666633222   223457777777777777777777777665

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.25  E-value=0.76  Score=40.53  Aligned_cols=51  Identities=10%  Similarity=0.217  Sum_probs=37.6

Q ss_pred             CHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCC
Q 045083          250 SAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPH  302 (556)
Q Consensus       250 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  302 (556)
                      +..++++++++|-...... + .+-+.|.|-|..|.++++.+++..|+++|+-
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~-F-~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKK-F-QKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             cHHHHHHHHhccccccchh-h-hccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            4567778887775432211 1 2336799999999999999999999999974

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=90.33  E-value=0.52  Score=34.48  Aligned_cols=47  Identities=19%  Similarity=0.258  Sum_probs=39.3

Q ss_pred             hHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhc
Q 045083           84 SPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKA  153 (556)
Q Consensus        84 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  153 (556)
                      ..+..|+..|+.|+++.+++.+.                       .....+..|+...+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~-----------------------~~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNK-----------------------PDNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhc-----------------------cHHHHHHHHHHHhhHHHHHHHHHh
Confidence            56899999999999999986432                       125678999999999999999985

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=90.20  E-value=16  Score=35.43  Aligned_cols=256  Identities=11%  Similarity=0.062  Sum_probs=147.2

Q ss_pred             ccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhc--CC
Q 045083           78 ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKA--DP  155 (556)
Q Consensus        78 ~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~--~~  155 (556)
                      .|..|.-.+.-+...++.+....+++.-..             ...--..|..|+-.+......+..+-...+++.  +.
T Consensus        17 ~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~-------------~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~   83 (322)
T cd07920          17 KDQHGSRFLQQKLEEATPEEKELIFDEILP-------------HVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGH   83 (322)
T ss_pred             CCchhhHHHHHHhccCCHHHHHHHHHHHHH-------------hHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            455677777777777777777777754211             111234577888888888888877755555542  22


Q ss_pred             CCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHh----cCCCCC
Q 045083          156 HVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK----ADPHVP  231 (556)
Q Consensus       156 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~~~~~~  231 (556)
                      -.....+..|.-.+..+...+..+-...+++.-.....   --..+..|...+..+......+..+.+++    +-..  
T Consensus        84 ~~~l~~~~~g~~vlqkll~~~~~~~~~~i~~~l~~~~~---~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~--  158 (322)
T cd07920          84 VVRLSLDMYGCRVIQKLLESISEEQISLLVKELRGHVV---ELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVA--  158 (322)
T ss_pred             HHHHcccchhHHHHHHHHHhcCHHHHHHHHHHHHHCHH---HHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHH--
Confidence            22224566677777777766665555544443211111   11257788888887777766655555443    2222  


Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHH----HhcCCCCCccc
Q 045083          232 YSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKIL----IEADPHVPYSA  307 (556)
Q Consensus       232 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~L----l~~~~~~~~~~  307 (556)
                      -..+..|...+.........+..+.+++.-.+...   --..|..|+..+..+.+.+..+..+.+    .++-..+  ..
T Consensus       159 l~~~~~G~~vvq~~l~~~~~~~~~~l~~~l~~~~~---~L~~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l--~~  233 (322)
T cd07920         159 LSTHPYGCRVIQRCLEHCSEEQREPLLEEILEHAL---ELVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQL--SC  233 (322)
T ss_pred             HHcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHH---HHhcCCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHH--Hc
Confidence            23466777777777666655444444332211111   113468899999999988876544444    3332222  45


Q ss_pred             cCCCCCHHHHHHHcCCH----HHHHHHHhcCC---C--CCCCCCCCCcHHHHHHhcCC
Q 045083          308 NRNSETPLYMAAANGSV----KIVAKILQKCP---S--PAHEGPDGKTALHAAVYTYP  356 (556)
Q Consensus       308 ~~~g~t~L~~A~~~~~~----~~v~~Ll~~~~---~--~~~~d~~g~t~L~~A~~~~~  356 (556)
                      ++.|...+..+...+..    .+++.++....   .  .-..|..|+-.+..+.....
T Consensus       234 ~k~Gs~Vve~~l~~~~~~~~~~ii~~l~~~~~~~~~l~~l~~d~~Gn~Viq~~l~~~~  291 (322)
T cd07920         234 HKFASNVVEKCLKHASKEERELIIDEILASGNETSALDTLMKDQYGNYVIQTALDVAK  291 (322)
T ss_pred             CcchHHHHHHHHHHCCHHHHHHHHHHHhcCCCchhHHHHHhCCCcccHHHHHHHHhCC
Confidence            77888888888887763    34444433321   1  12456777777776666544

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=88.67  E-value=0.81  Score=33.47  Aligned_cols=48  Identities=19%  Similarity=0.284  Sum_probs=33.5

Q ss_pred             CcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHh
Q 045083          132 NTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQN  187 (556)
Q Consensus       132 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  187 (556)
                      ...+..|+.+|+.|+++.+++.+ .+       ....+..|+...+.|++++|+++
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~-------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KP-------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-cc-------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            34567788888888888777643 11       14567788888888888888775

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=88.12  E-value=8.6  Score=37.34  Aligned_cols=20  Identities=5%  Similarity=-0.044  Sum_probs=11.3

Q ss_pred             cccCCCCCHHHHHHHcCCHH
Q 045083          306 SANRNSETPLYMAAANGSVK  325 (556)
Q Consensus       306 ~~~~~g~t~L~~A~~~~~~~  325 (556)
                      ..|..|+-.+..+......+
T Consensus       274 ~~d~~Gn~Viq~~l~~~~~~  293 (322)
T cd07920         274 MKDQYGNYVIQTALDVAKEE  293 (322)
T ss_pred             hCCCcccHHHHHHHHhCCHH
Confidence            34556666666665555543

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	556
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		3e-20
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		5e-20
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-13
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		5e-08
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-12
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-09
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		1e-08
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		1e-06
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-08
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-08
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-07
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		4e-04
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-08
2xee_A	157	Structural Determinants For Improved Thermal Stabil		4e-04
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		6e-08
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		2e-05
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		6e-08
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		8e-06
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		6e-08
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		1e-06
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		8e-08
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-05
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-07
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-04
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		2e-07
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		4e-07
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		7e-06
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		4e-07
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		4e-07
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		4e-06
1uoh_A	226	Human Gankyrin Length = 226		4e-07
1uoh_A	226	Human Gankyrin Length = 226		4e-06
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		5e-07
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		6e-07
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		7e-07
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		7e-07
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		9e-07
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-06
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		4e-05
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		6e-04
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		3e-06
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-05
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		6e-05
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-06
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-06
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-05
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-06
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		3e-06
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-06
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		5e-06
3ljn_A	364	Ankyrin Repeat Protein From Leishmania Major Length		5e-06
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		7e-06
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		8e-06
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		5e-04
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		9e-06
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		9e-06
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		6e-04
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-05
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-05
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-05
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		1e-05
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		7e-04
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-05
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		3e-05
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		4e-05
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		3e-05
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-05
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		4e-05
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		6e-05
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		5e-05
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		5e-05
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		6e-05
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		6e-05
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		6e-05
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		1e-04
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		7e-05
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		7e-05
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		8e-05
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		9e-05
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		1e-04
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-04
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-04
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-04
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		8e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 145/281 (51%), Gaps = 49/281 (17%)
Query: 78  ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
           +N K ++PLH+AA+ GHT + ++L+   N+  ++ +               ++  TPLH 
Sbjct: 43  SNVKVETPLHMAARAGHTEVAKYLL--QNKAKVNAKA--------------KDDQTPLHC 86
Query: 138 AVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQ 195
           A R+   ++VK+L++  A+P+++ +A     T L++A   G  E V  +L+   + A++ 
Sbjct: 87  AARIGHTNMVKLLLENNANPNLATTA---GHTPLHIAAREGHVETVLALLE---KEASQA 140
Query: 196 MLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVA 255
            + K   +  TPLH A +  +V V ++L++ D H P +A +N  TPL++AV + + +IV 
Sbjct: 141 CMTK---KGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVK 196
Query: 256 EIL--QNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSE- 312
            +L     P S A            TPLH A +   V+VA+ L++      Y  + N+E 
Sbjct: 197 LLLPRGGSPHSPAWNGY--------TPLHIAAKQNQVEVARSLLQ------YGGSANAES 242
Query: 313 ----TPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALH 349
               TPL++AA  G  ++VA +L K  +       G T LH
Sbjct: 243 VQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLH 283

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 131/251 (52%), Gaps = 23/251 (9%)
Query: 133 TPLHEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQ 190
           TPLH A  +  + +VK L++  A P+VS   N   ET L+MA   G  E+   +LQN  +
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGASPNVS---NVKVETPLHMAARAGHTEVAKYLLQNKAK 72
Query: 191 SAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVAN 248
             A+       ++  TPLH A R+   ++VK+L++  A+P++  +A     TPL++A   
Sbjct: 73  VNAKA------KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA---GHTPLHIAARE 123
Query: 249 GSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSAN 308
           G  E V  +L+   E++   M +K      TPLH A +   V VA++L+E D H P +A 
Sbjct: 124 GHVETVLALLEK--EASQACMTKKGF----TPLHVAAKYGKVRVAELLLERDAH-PNAAG 176
Query: 309 RNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRG 368
           +N  TPL++A  + ++ IV  +L +  SP     +G T LH A      ++   +L   G
Sbjct: 177 KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 236
Query: 369 TFKPQEIQELS 379
           +   + +Q ++
Sbjct: 237 SANAESVQGVT 247

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 106/245 (43%), Gaps = 38/245 (15%)
Query: 84  SPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRS 143
           SPLH AA+ GH  I   L              V++ A   +   +E+Q TPL EA     
Sbjct: 13  SPLHAAAEAGHVDICHML--------------VQAGAN--IDTCSEDQRTPLMEAAENNH 56
Query: 144 VDVVKILIKA----DPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEK 199
           ++ VK LIKA    DP      +    T L++A   G  E+V  +L N      +  +  
Sbjct: 57  LEAVKYLIKAGALVDP-----KDAEGSTCLHLAAKKGHYEVVQYLLSN-----GQMDVNC 106
Query: 200 TNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQ 259
            ++   TP+  A   + VD+VK+L+     +    N  +   L+ A  +G  +I AEIL 
Sbjct: 107 QDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEEN-ICLHWAAFSGCVDI-AEILL 164
Query: 260 NCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAA 319
                AA+  L   N   ++PLH A R    D   + +  D  V    N+  ETPL  A+
Sbjct: 165 -----AAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLK-NKEGETPLQCAS 218
Query: 320 ANGSV 324
            N  V
Sbjct: 219 LNSQV 223

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 101/228 (44%), Gaps = 14/228 (6%)
Query: 124 LKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAE 183
            KM ++ + +PLH A     VD+  +L++A  ++  + + +  T L  A  N   E V  
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKY 62
Query: 184 ILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLY 243
           +++      A  +++  + E +T LH A +    +VV+ L+          +    TP+ 
Sbjct: 63  LIK------AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMI 116
Query: 244 MAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHV 303
            A      ++V  +L    +   R      + E+N  LH A     VD+A+IL+ A   +
Sbjct: 117 WATEYKHVDLVKLLLSKGSDINIR------DNEENICLHWAAFSGCVDIAEILLAAKCDL 170
Query: 304 PYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAA 351
            ++ N + ++PL++AA       V   L +      +  +G+T L  A
Sbjct: 171 -HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCA 217

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/127 (35%), Positives = 76/127 (59%), Gaps = 8/127 (6%)
Query: 206 TPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESA 265
           TPLH A R   ++VVK+L++A   V  + ++N  TPL++A  NG  E+V  +L+   +  
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 266 ARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVK 325
           A+      ++   TPLH A R   ++V K+L+EA   V  + ++N  TPL++AA NG ++
Sbjct: 63  AK------DKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLE 115
Query: 326 IVAKILQ 332
           +V  +L+
Sbjct: 116 VVKLLLE 122

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 50/148 (33%), Positives = 72/148 (48%), Gaps = 16/148 (10%)
Query: 208 LHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESA 265
           L EA      D VK L++  ADP+   +++ +  TPL+ A  NG  EIV  +L    +  
Sbjct: 8   LIEAAENGNKDRVKDLLENGADPN---ASDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 64
Query: 266 ARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETPLYMAAANGS 323
           A+      + +  TPLH A      ++ K+L+   ADP+   S  R   TPL+ AA NG 
Sbjct: 65  AK------DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR---TPLHYAAENGH 115
Query: 324 VKIVAKILQKCPSPAHEGPDGKTALHAA 351
            +IV  +L K   P     DG+T L  A
Sbjct: 116 KEIVKLLLSKGADPNTSDSDGRTPLDLA 143

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 95/220 (43%), Gaps = 42/220 (19%)
Query: 84  SPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRS 143
           SP+H AA  GH   +  LI                +    + +   +  +PLHEA     
Sbjct: 61  SPMHEAAIHGHQLSLRNLI----------------SQGWAVNIITADHVSPLHEACLGGH 104
Query: 144 VDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEE 203
           +  VKIL+K    V+     +  T L+ A  +GS + V  +LQ+    A+ Q       +
Sbjct: 105 LSCVKILLKHGAQVN-GVTADWHTPLFNACVSGSWDCVNLLLQH---GASVQ----PESD 156
Query: 204 QNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSE-----TPLYMAVANGSAEIVAEIL 258
             +P+HEA R   V+ V  LI       Y  N + +     TPLY+A  N     V ++L
Sbjct: 157 LASPIHEAARRGHVECVNSLIA------YGGNIDHKISHLGTPLYLACENQQRACVKKLL 210
Query: 259 QNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE 298
               ES A        + Q++PLH  VR  S ++A +L++
Sbjct: 211 ----ESGADV---NQGKGQDSPLHAVVRTASEELACLLMD 243

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 70/154 (45%), Gaps = 20/154 (12%)
Query: 206 TPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESA 265
           +PLHEA     +  VKIL+K    V      +  TPL+ A  +GS + V  +LQ+    A
Sbjct: 94  SPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQH---GA 149
Query: 266 ARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSE-----TPLYMAAA 320
           + Q       +  +P+HEA R   V+    LI       Y  N + +     TPLY+A  
Sbjct: 150 SVQ----PESDLASPIHEAARRGHVECVNSLIA------YGGNIDHKISHLGTPLYLACE 199
Query: 321 NGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYT 354
           N     V K+L+   +  ++G    + LHA V T
Sbjct: 200 NQQRACVKKLLES-GADVNQGKGQDSPLHAVVRT 232

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 12/146 (8%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
           L EA      D VK L++    V  +++ + +TPL++A  NG  E+V  +L    +  A+
Sbjct: 8   LIEAAENGNKDRVKDLLENGADVN-ASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK 66
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETPLYMAAANGSVK 325
                 + +  TPLH A      +V K+L+   ADP+   + + + +TPL++AA NG  +
Sbjct: 67  ------DSDGKTPLHLAAENGHKEVVKLLLSQGADPN---AKDSDGKTPLHLAAENGHKE 117
Query: 326 IVAKILQKCPSPAHEGPDGKTALHAA 351
           +V  +L +   P     DG+T L  A
Sbjct: 118 VVKLLLSQGADPNTSDSDGRTPLDLA 143

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/151 (31%), Positives = 77/151 (50%), Gaps = 26/151 (17%)
Query: 79  NAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPL 135
           NAK   G +PLHLAA++GH  IVE L          L+ G +  A+      +++  TPL
Sbjct: 29  NAKDKDGYTPLHLAAREGHLEIVEVL----------LKAGADVNAK------DKDGYTPL 72
Query: 136 HEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQ 195
           H A R   +++V++L+KA   V+ + +++  T L++A   G  EIV  +L+      A+ 
Sbjct: 73  HLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 131
Query: 196 MLEKTNEEQNTPLHEAVRLRRVDVVKILIKA 226
              K      TP   A+R    D+ ++L KA
Sbjct: 132 KFGK------TPFDLAIREGHEDIAEVLQKA 156

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/154 (28%), Positives = 79/154 (51%), Gaps = 8/154 (5%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
           L EA R  + D V+IL+     V  + +++  TPL++A   G  EIV  +L+   +  A+
Sbjct: 6   LLEAARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
                 +++  TPLH A R   +++ ++L++A   V  + +++  TPL++AA  G ++IV
Sbjct: 65  ------DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIV 117
Query: 328 AKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
             +L+       +   GKT    A+     DI E
Sbjct: 118 EVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAE 151

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 279 TPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPA 338
           TPLH A R   +++ ++L++A   V  + +++  TPL++AA  G ++IV  +L+      
Sbjct: 37  TPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 339 HEGPDGKTALHAAVYTYPTDILERVL 364
            +  DG T LH A      +I+E +L
Sbjct: 96  AKDKDGYTPLHLAAREGHLEIVEVLL 121

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/128 (31%), Positives = 74/128 (57%), Gaps = 9/128 (7%)
Query: 206 TPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESA 265
           TPLH A R   +++V++L+KA   V  + +++  TPL++A   G  EIV  +L+   +  
Sbjct: 37  TPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 266 ARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVK 325
           A+      +++  TPLH A R   +++ ++L++A   V  + ++  +TP  +A  NG+  
Sbjct: 96  AK------DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AQDKFGKTPFDLAIDNGNED 148
Query: 326 IVAKILQK 333
           I A++LQK
Sbjct: 149 I-AEVLQK 155

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 279 TPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPA 338
           TPLH A R   +++ ++L++A   V  + +++  TPL++AA  G ++IV  +L+      
Sbjct: 37  TPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 339 HEGPDGKTALHAAVYTYPTDILERVL 364
            +  DG T LH A      +I+E +L
Sbjct: 96  AKDKDGYTPLHLAAREGHLEIVEVLL 121

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 18/155 (11%)
Query: 176 GSAEIVAEILQNCPQS---AARQMLEKTNEEQN-------TPLHEAVRLRRVDVVKILIK 225
           GS E + +I   C +    A R  L+ T  + N       +PLH A R  R  VV++LI 
Sbjct: 1   GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM 60
Query: 226 ADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAV 285
               +    NR  +TPL++A ++G  +IV ++LQ       +  +   NE  N PLH A 
Sbjct: 61  RGARINV-MNRGDDTPLHLAASHGHRDIVQKLLQ------YKADINAVNEHGNVPLHYAC 113
Query: 286 RLRSVDVAKILIEADPHVPYSANRNSETPLYMAAA 320
                 VA+ L+ A+  +    N+  E P+  A A
Sbjct: 114 FWGQDQVAEDLV-ANGALVSICNKYGEMPVDKAKA 147

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 57/132 (43%), Gaps = 12/132 (9%)
Query: 249 GSAEIVAEILQNCPES---AARQMLEKTNEEQN-------TPLHEAVRLRSVDVAKILIE 298
           GS E + +I   C E    A R  L+ T  + N       +PLH A R     V ++LI 
Sbjct: 1   GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM 60
Query: 299 ADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTD 358
               +    NR  +TPL++AA++G   IV K+LQ           G   LH A + +  D
Sbjct: 61  RGARINV-MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACF-WGQD 118
Query: 359 ILERVLIVRGTF 370
            +   L+  G  
Sbjct: 119 QVAEDLVANGAL 130

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 92/216 (42%), Gaps = 39/216 (18%)
Query: 144 VDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ-NCPQSAARQMLEKTNE 202
           +D +K  I AD  ++   +++S T L+ A + G  EIV  +LQ   P       +   ++
Sbjct: 19  LDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-------VNDKDD 71
Query: 203 EQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCP 262
              +PLH A    R ++VK L+    HV  + N+N  TPL+ A +    EI   +L+   
Sbjct: 72  AGWSPLHIAASAGRDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
Query: 263 ESAARQMLEKT---------------------------NEEQNTPLHEAVRLRSVDVAKI 295
              A+   + T                           + E NTPLH A     V+ AK 
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190
Query: 296 LIEADPHVPYSANRNSETPLYMAAANGSVKIVAKIL 331
           L+     + Y  N+  +TPL +  A G + ++ K L
Sbjct: 191 LVTQGASI-YIENKEEKTPLQV--AKGGLGLILKRL 223

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 10/162 (6%)
Query: 192 AARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNS-ETPLYMAVANGS 250
           A + +  +T+++  T LH A      ++V+ L++    VP +   ++  +PL++A + G 
Sbjct: 28  ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG--VPVNDKDDAGWSPLHIAASAGR 85
Query: 251 AEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRN 310
            EIV  +L       A       N+   TPLH A      ++A +L+E   + P + +  
Sbjct: 86  DEIVKALLVKGAHVNA------VNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHY 138
Query: 311 SETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAV 352
             T ++ AAA G++K+V  +L    S   +  +G T LH A 
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC 180

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 32/215 (14%)
Query: 84  SPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRS 143
           SP+H AA  GH   +  LI                +    + +   +  +PLHEA     
Sbjct: 5   SPMHEAAIHGHQLSLRNLI----------------SQGWAVNIITADHVSPLHEACLGGH 48
Query: 144 VDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEE 203
           +  VKIL+K    V+     +  T L+ A  +GS + V  +LQ+    A+ Q       +
Sbjct: 49  LSCVKILLKHGAQVN-GVTADWHTPLFNACVSGSWDCVNLLLQH---GASVQ----PESD 100
Query: 204 QNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPE 263
             +P+HEA R   V+ V  LI    ++ +  +    TPLY+A  N     V ++L    E
Sbjct: 101 LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLL----E 155
Query: 264 SAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE 298
           S A        + Q++PLH   R  S ++A +L++
Sbjct: 156 SGAD---VNQGKGQDSPLHAVARTASEELACLLMD 187

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 10/149 (6%)
Query: 206 TPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESA 265
           +PLHEA     +  VKIL+K    V      +  TPL+ A  +GS + V  +LQ+    A
Sbjct: 38  SPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQH---GA 93
Query: 266 ARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVK 325
           + Q       +  +P+HEA R   V+    LI    ++ +  +    TPLY+A  N    
Sbjct: 94  SVQ----PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRA 148
Query: 326 IVAKILQKCPSPAHEGPDGKTALHAAVYT 354
            V K+L+   +  ++G    + LHA   T
Sbjct: 149 CVKKLLES-GADVNQGKGQDSPLHAVART 176

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 56/96 (58%), Gaps = 7/96 (7%)
Query: 237 NSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKIL 296
           N  TPL++A  NG  E+V  +L+   +  A+      ++   TPLH A R   ++V K+L
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAK------DKNGRTPLHLAARNGHLEVVKLL 54
Query: 297 IEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQ 332
           +EA   V  + ++N  TPL++AA NG +++V  +L+
Sbjct: 55  LEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLE 89

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 279 TPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPA 338
           TPLH A R   ++V K+L+EA   V  + ++N  TPL++AA NG +++V  +L+      
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 339 HEGPDGKTALHAA 351
            +  +G+T LH A
Sbjct: 63  AKDKNGRTPLHLA 75

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/154 (27%), Positives = 80/154 (51%), Gaps = 8/154 (5%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
           L EA R  + D V+IL+     V  + +++  TPL++A   G  EIV  +L+   +  A+
Sbjct: 18  LLEAARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 76
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
                 +++  TPLH A R   +++ ++L++A   V  + +++  TPL++AA  G ++IV
Sbjct: 77  ------DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIV 129
Query: 328 AKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
             +L+       +   GKTA   ++     D+ E
Sbjct: 130 EVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAE 163

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 279 TPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPA 338
           TPLH A R   +++ ++L++A   V  + +++  TPL++AA  G ++IV  +L+      
Sbjct: 49  TPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 107
Query: 339 HEGPDGKTALHAAVYTYPTDILERVL 364
            +  DG T LH A      +I+E +L
Sbjct: 108 AKDKDGYTPLHLAAREGHLEIVEVLL 133

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 94/193 (48%), Gaps = 9/193 (4%)
Query: 161 ANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVV 220
           A+ + +T L++AV  G+   V  ++ N  Q   R+ L+  N  + TPLH AV      VV
Sbjct: 5   ADEDGDTPLHIAVVQGNLPAVHRLV-NLFQQGGRE-LDIYNNLRQTPLHLAVITTLPSVV 62
Query: 221 KILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQML--EKTNEEQN 278
           ++L+ A    P + +R+ +T  ++A  + S   +  +L    +SAA   L  E  N +  
Sbjct: 63  RLLVTAGAS-PMALDRHGQTAAHLACEHRSPTCLRALL----DSAAPGTLDLEARNYDGL 117
Query: 279 TPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPA 338
           T LH AV     +  ++L+E    +     ++  +PL  A  N S+ +V  +LQ   +  
Sbjct: 118 TALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN 177
Query: 339 HEGPDGKTALHAA 351
            +   G +ALH+A
Sbjct: 178 AQMYSGSSALHSA 190

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 91/216 (42%), Gaps = 39/216 (18%)
Query: 144 VDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ-NCPQSAARQMLEKTNE 202
           +D +K  I AD  ++   +++S T L+ A + G  EIV  +LQ   P       +   ++
Sbjct: 19  LDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-------VNDKDD 71
Query: 203 EQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCP 262
              +PLH A      ++VK L+    HV  + N+N  TPL+ A +    EI   +L+   
Sbjct: 72  AGWSPLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
Query: 263 ESAARQMLEKT---------------------------NEEQNTPLHEAVRLRSVDVAKI 295
              A+   + T                           + E NTPLH A     V+ AK 
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190
Query: 296 LIEADPHVPYSANRNSETPLYMAAANGSVKIVAKIL 331
           L+     + Y  N+  +TPL +  A G + ++ K L
Sbjct: 191 LVTQGASI-YIENKEEKTPLQV--AKGGLGLILKRL 223

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 10/162 (6%)
Query: 192 AARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNS-ETPLYMAVANGS 250
           A + +  +T+++  T LH A      ++V+ L++    VP +   ++  +PL++A + G 
Sbjct: 28  ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG--VPVNDKDDAGWSPLHIAASAGX 85
Query: 251 AEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRN 310
            EIV  +L       A       N+   TPLH A      ++A +L+E   + P + +  
Sbjct: 86  DEIVKALLVKGAHVNA------VNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHY 138
Query: 311 SETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAV 352
             T ++ AAA G++K+V  +L    S   +  +G T LH A 
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC 180

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
           L EA R  + D V+IL+ A+     + +    TPL+MA A G  EIV  +L+N  +  A 
Sbjct: 6   LLEAARAGQDDEVRILM-ANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNA- 63
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSE-----TPLYMAAANG 322
                 +    TPLH A  L  +++ ++L++      Y A+ N++     TPLY+AA  G
Sbjct: 64  -----VDTNGTTPLHLAASLGHLEIVEVLLK------YGADVNAKDATGITPLYLAAYWG 112
Query: 323 SVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
            ++IV  +L+       +   GKTA   ++     D+ E
Sbjct: 113 HLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAE 151

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 89/211 (42%), Gaps = 39/211 (18%)
Query: 147 VKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ-NCPQSAARQMLEKTNEEQN 205
           +K  I AD  ++   +++S T L+ A + G  EIV  +LQ   P       +   ++   
Sbjct: 23  LKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-------VNDKDDAGW 75
Query: 206 TPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESA 265
           +PLH A    R ++VK L+     V  + N+N  TPL+ A +    EI   +L+      
Sbjct: 76  SPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 134
Query: 266 ARQMLEKT---------------------------NEEQNTPLHEAVRLRSVDVAKILIE 298
           A+   E T                           + E NTPLH A     V+ AK+L+ 
Sbjct: 135 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVS 194
Query: 299 ADPHVPYSANRNSETPLYMAAANGSVKIVAK 329
               + Y  N+  +TPL +  A G + ++ K
Sbjct: 195 QGASI-YIENKEEKTPLQV--AKGGLGLILK 222

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 79/162 (48%), Gaps = 10/162 (6%)
Query: 192 AARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSE-TPLYMAVANGS 250
           A + +  +T+++  T LH A      ++V+ L++    VP +   ++  +PL++A + G 
Sbjct: 29  ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG--VPVNDKDDAGWSPLHIAASAGR 86
Query: 251 AEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRN 310
            EIV  +L    +  A       N+   TPLH A      ++A +L+E   + P + +  
Sbjct: 87  DEIVKALLGKGAQVNA------VNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHY 139
Query: 311 SETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAV 352
             T ++ AAA G++K++  +L    S   +  +G T LH A 
Sbjct: 140 EATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLAC 181

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 39/207 (18%)
Query: 151 IKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ-NCPQSAARQMLEKTNEEQNTPLH 209
           I AD  ++   +++S T L+ A + G  EIV  +LQ   P       +   ++   +PLH
Sbjct: 26  ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-------VNDKDDAGWSPLH 78
Query: 210 EAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQM 269
            A    R ++VK L+     V  + N+N  TPL+ A +    EI   +L+      A+  
Sbjct: 79  IAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 137
Query: 270 LEKT---------------------------NEEQNTPLHEAVRLRSVDVAKILIEADPH 302
            E T                           + E NTPLH A     V+ AK+L+     
Sbjct: 138 YEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS 197
Query: 303 VPYSANRNSETPLYMAAANGSVKIVAK 329
           + Y  N+  +TPL +  A G + ++ K
Sbjct: 198 I-YIENKEEKTPLQV--AKGGLGLILK 221

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 79/162 (48%), Gaps = 10/162 (6%)
Query: 192 AARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNS-ETPLYMAVANGS 250
           A + +  +T+++  T LH A      ++V+ L++    VP +   ++  +PL++A + G 
Sbjct: 28  ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG--VPVNDKDDAGWSPLHIAASAGR 85
Query: 251 AEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRN 310
            EIV  +L    +  A       N+   TPLH A      ++A +L+E   + P + +  
Sbjct: 86  DEIVKALLGKGAQVNA------VNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHY 138
Query: 311 SETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAV 352
             T ++ AAA G++K++  +L    S   +  +G T LH A 
Sbjct: 139 EATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLAC 180

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 8/154 (5%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
           L EA R  + D V+IL+     V  + N +  TPL++A +NG  EIV  +L+N  +  A 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDN-DGYTPLHLAASNGHLEIVEVLLKNGADVNAS 76
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
            +         TPLH A     +++ ++L++    V    N +  TPL++AA  G ++IV
Sbjct: 77  DL------TGITPLHLAAATGHLEIVEVLLKHGADVNAYDN-DGHTPLHLAAKYGHLEIV 129
Query: 328 AKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
             +L+       +   GKTA   ++     D+ E
Sbjct: 130 EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 163

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 8/154 (5%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
           L EA R  R D V+IL+     V  +A+    TPL++A   G  EIV  +L+N  +  A 
Sbjct: 18  LLEAARAGRDDEVRILMANGADVN-AADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY 76
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
             L       +TPLH A     +++ ++L++    V  + + N  TPL++AA  G ++IV
Sbjct: 77  DTL------GSTPLHLAAHFGHLEIVEVLLKNGADVN-AKDDNGITPLHLAANRGHLEIV 129
Query: 328 AKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
             +L+       +   GKTA   ++     D+ E
Sbjct: 130 EVLLKYGADVNAQDKFGKTAFDISINNGNEDLAE 163

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 112/301 (37%), Gaps = 61/301 (20%)
Query: 81  KGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVR 140
            GD+ LHLA    H   ++FL+ F             SA  + L + N+   T LH A  
Sbjct: 8   DGDTALHLAVIHQHEPFLDFLLGF-------------SAGHEYLDLQNDLGQTALHLAAI 54
Query: 141 LRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKT 200
           L     V+ L  A                      G+  +VAE                 
Sbjct: 55  LGEASTVEKLYAA----------------------GAGVLVAE----------------- 75
Query: 201 NEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQN 260
               +T LH A R+R      +L++  P  P  A+    T       + S    A   Q 
Sbjct: 76  -RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQP 134
Query: 261 CPESAA-------RQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSET 313
            PE+         R  LE  N + +TPLH AV  +  ++ ++L +A   +         T
Sbjct: 135 NPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRT 194
Query: 314 PLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRGTFKPQ 373
           PL++A    +  ++  +L+    P      G+T L +A+   P  IL R+L   G  +P+
Sbjct: 195 PLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLR-PNPILARLLRAHGAPEPE 253
Query: 374 E 374
           +
Sbjct: 254 D 254

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 112/301 (37%), Gaps = 61/301 (20%)
Query: 81  KGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVR 140
            GD+ LHLA    H   ++FL+ F             SA  + L + N+   T LH A  
Sbjct: 8   DGDTALHLAVIHQHEPFLDFLLGF-------------SAGHEYLDLQNDLGQTALHLAAI 54
Query: 141 LRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKT 200
           L     V+ L  A                      G+  +VAE                 
Sbjct: 55  LGEASTVEKLYAA----------------------GAGVLVAE----------------- 75
Query: 201 NEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQN 260
               +T LH A R+R      +L++  P  P  A+    T       + S    A   Q 
Sbjct: 76  -RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQP 134
Query: 261 CPESAA-------RQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSET 313
            PE+         R  LE  N + +TPLH AV  +  ++ ++L +A   +         T
Sbjct: 135 NPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRT 194
Query: 314 PLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRGTFKPQ 373
           PL++A    +  ++  +L+    P      G+T L +A+   P  IL R+L   G  +P+
Sbjct: 195 PLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLR-PNPILARLLRAHGAPEPE 253
Query: 374 E 374
           +
Sbjct: 254 D 254

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 7/131 (5%)
Query: 235 NRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAK 294
           +++  +PL++A  +G A+++  +L++   + AR      N +Q  PLH A +     V K
Sbjct: 83  SQDGSSPLHVAALHGRADLIPLLLKHGANAGAR------NADQAVPLHLACQQGHFQVVK 136
Query: 295 ILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYT 354
            L++++   P   + +  TPL  A + G  ++VA +LQ   S       G TALH AV  
Sbjct: 137 CLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIE 195
Query: 355 YPTDILERVLI 365
               ++E +L+
Sbjct: 196 KHVFVVELLLL 206

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 33/186 (17%)
Query: 1   MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXX 60
           + +KL EAA  G  +  R +  +  +   TD + +T LH+     HL +           
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEI----------- 62
Query: 61  XXFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAA 120
              VE +L     +    N  G +PLHLAA  GH  IVE L          L+ G +  A
Sbjct: 63  ---VEVLLKYGADVNAWDNY-GATPLHLAADNGHLEIVEVL----------LKHGADVNA 108
Query: 121 RQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEI 180
           +      + E  TPLH A     +++V++L+K    V+ + ++  +T   +++ NG+ E 
Sbjct: 109 K------DYEGFTPLHLAAYDGHLEIVEVLLKYGADVN-AQDKFGKTAFDISIDNGN-ED 160
Query: 181 VAEILQ 186
           +AEILQ
Sbjct: 161 LAEILQ 166

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 74/139 (53%), Gaps = 29/139 (20%)
Query: 205 NTPLHEAVRLRRVDVVKILIKADPHVPYSANRNS-----ETPLYMAVANGSAEIVAEILQ 259
           +TPLH A +   +++V++L+K      Y A+ N+      TPL++A  NG  EIV  +L+
Sbjct: 48  HTPLHLAAKTGHLEIVEVLLK------YGADVNAWDNYGATPLHLAADNGHLEIVEVLLK 101
Query: 260 NCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSE-----TP 314
           +  +  A+      + E  TPLH A     +++ ++L++      Y A+ N++     T 
Sbjct: 102 HGADVNAK------DYEGFTPLHLAAYDGHLEIVEVLLK------YGADVNAQDKFGKTA 149
Query: 315 LYMAAANGSVKIVAKILQK 333
             ++  NG+ + +A+ILQK
Sbjct: 150 FDISIDNGN-EDLAEILQK 167

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 11/92 (11%)
Query: 278 NTPLHEAVRLRSVDVAKILIEADPHVPYSANRNS-----ETPLYMAAANGSVKIVAKILQ 332
           +TPLH A +   +++ ++L++      Y A+ N+      TPL++AA NG ++IV  +L+
Sbjct: 48  HTPLHLAAKTGHLEIVEVLLK------YGADVNAWDNYGATPLHLAADNGHLEIVEVLLK 101
Query: 333 KCPSPAHEGPDGKTALHAAVYTYPTDILERVL 364
                  +  +G T LH A Y    +I+E +L
Sbjct: 102 HGADVNAKDYEGFTPLHLAAYDGHLEIVEVLL 133

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 33/186 (17%)
Query: 1   MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXX 60
           + +KL EAA  G  +  R +  +  +    D    T LH+  ++ HL +           
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEI----------- 62
Query: 61  XXFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAA 120
              VE +L     +   A+  GD+PLHLAA  GH  IVE L          L+ G +  A
Sbjct: 63  ---VEVLLKHGADV-NAADKMGDTPLHLAALYGHLEIVEVL----------LKNGADVNA 108
Query: 121 RQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEI 180
                 T+    TPLH A     +++V++L+K    V+ + ++  +T   +++ NG+ E 
Sbjct: 109 ------TDTYGFTPLHLAADAGHLEIVEVLLKYGADVN-AQDKFGKTAFDISIDNGN-ED 160
Query: 181 VAEILQ 186
           +AEILQ
Sbjct: 161 LAEILQ 166

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 72/132 (54%), Gaps = 9/132 (6%)
Query: 128 NEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQN 187
           ++   TPLH A     +++V++L+K    V+ +A++  +T L++A   G  EIV  +L+N
Sbjct: 44  DDSGKTPLHLAAIKGHLEIVEVLLKHGADVN-AADKMGDTPLHLAALYGHLEIVEVLLKN 102
Query: 188 CPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVA 247
                A      T+    TPLH A     +++V++L+K    V  + ++  +T   +++ 
Sbjct: 103 GADVNA------TDTYGFTPLHLAADAGHLEIVEVLLKYGADVN-AQDKFGKTAFDISID 155
Query: 248 NGSAEIVAEILQ 259
           NG+ E +AEILQ
Sbjct: 156 NGN-EDLAEILQ 166

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 78/155 (50%), Gaps = 10/155 (6%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPE-SAA 266
           L EA R  + D V+IL+     V  + + + +TPL++A   G  EIV  +L++  + +AA
Sbjct: 18  LLEAARAGQDDEVRILMANGADVN-AEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA 76
Query: 267 RQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKI 326
            +M        +TPLH A     +++ ++L++    V  + +    TPL++AA  G ++I
Sbjct: 77  DKM-------GDTPLHLAALYGHLEIVEVLLKNGADVN-ATDTYGFTPLHLAADAGHLEI 128
Query: 327 VAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
           V  +L+       +   GKTA   ++     D+ E
Sbjct: 129 VEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAE 163

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 38/184 (20%)
Query: 1   MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXX 60
           + ++L EAA  G+ +  +++  +  +   +D    T LH      H              
Sbjct: 4   LGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGH-------------- 49
Query: 61  XXFVEQILDLCPSLLFQANAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVE 117
               ++I+ L  S     NAK   G +PLH AAK+GH  IV+ LI           +G +
Sbjct: 50  ----KEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLI----------SKGAD 95
Query: 118 SAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGS 177
             A+      + +  TPLH A +    ++VK+LI     V+ +++ +  T L +A  +G+
Sbjct: 96  VNAK------DSDGRTPLHYAAKEGHKEIVKLLISKGADVN-TSDSDGRTPLDLAREHGN 148
Query: 178 AEIV 181
            EIV
Sbjct: 149 EEIV 152

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 23/148 (15%)
Query: 78  ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
           +++ G +PLH AAK+GH  IV+ LI           +G +  A+      + +  TPLH 
Sbjct: 33  SDSDGRTPLHYAAKEGHKEIVKLLI----------SKGADVNAK------DSDGRTPLHY 76
Query: 138 AVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQML 197
           A +    ++VK+LI     V+ + + +  T L+ A   G  EIV  ++           +
Sbjct: 77  AAKEGHKEIVKLLISKGADVN-AKDSDGRTPLHYAAKEGHKEIVKLLISKGAD------V 129
Query: 198 EKTNEEQNTPLHEAVRLRRVDVVKILIK 225
             ++ +  TPL  A      ++VK+L K
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEIVKLLEK 157

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 8/144 (5%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
           L EA      D VK LI+    V  +++ +  TPL+ A   G  EIV  ++    +  A+
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVN-ASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK 66
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
                 + +  TPLH A +    ++ K+LI     V  + + +  TPL+ AA  G  +IV
Sbjct: 67  ------DSDGRTPLHYAAKEGHKEIVKLLISKGADVN-AKDSDGRTPLHYAAKEGHKEIV 119
Query: 328 AKILQKCPSPAHEGPDGKTALHAA 351
             ++ K         DG+T L  A
Sbjct: 120 KLLISKGADVNTSDSDGRTPLDLA 143

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 8/154 (5%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
           L EA R  + D V+IL+     V  + +    TPL++A   G  EIV  +L+N  +  A+
Sbjct: 18  LLEAARAGQDDEVRILMANGADVN-ARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK 76
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
             L  T      PLH A R   +++ ++L++    V  +++ +  TPL++AA  G ++IV
Sbjct: 77  DSLGVT------PLHLAARRGHLEIVEVLLKNGADVN-ASDSHGFTPLHLAAKRGHLEIV 129
Query: 328 AKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
             +L+       +   GKTA   ++     D+ E
Sbjct: 130 EVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAE 163

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/148 (29%), Positives = 68/148 (45%), Gaps = 18/148 (12%)
Query: 183 EILQNCPQS---AARQMLEKTNEEQN-------TPLHEAVRLRRVDVVKILIKADPHVPY 232
           +I   C +    A R  L+ T  + N       +PLH A R  R  VV++LI     +  
Sbjct: 3   DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV 62
Query: 233 SANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDV 292
             NR  +TPL++A ++G  +IV ++LQ       +  +   NE  N PLH A       V
Sbjct: 63  -MNRGDDTPLHLAASHGHRDIVQKLLQ------YKADINAVNEHGNVPLHYACFWGQDQV 115
Query: 293 AKILIEADPHVPYSANRNSETPLYMAAA 320
           A+ L+ A+  +    N+  E P+  A A
Sbjct: 116 AEDLV-ANGALVSICNKYGEMPVDKAKA 142

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
           L EA      D VK LI+    V  +++ +  TPL+ A  NG  E+V  ++    +  A+
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVN-ASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK 66
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
                 + +  TPLH A      +V K+LI     V  + + +  TPL+ AA NG  ++V
Sbjct: 67  ------DSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGHKEVV 119
Query: 328 AKILQKCPSPAHEGPDGKTALHAA 351
             ++ K         DG+T L  A
Sbjct: 120 KLLISKGADVNTSDSDGRTPLDLA 143

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 8/154 (5%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
           L EA    + D V+IL+     V  + + N  TPL++A ANG  EIV  +L+N  +  A 
Sbjct: 10  LLEAAAAGQDDEVRILMANGADVN-ATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNA- 67
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
                ++    TPLH A     +++ ++L++    V  + +R   TPL++AA +G ++IV
Sbjct: 68  -----SDSAGITPLHLAAYDGHLEIVEVLLKHGADVN-AYDRAGWTPLHLAALSGQLEIV 121
Query: 328 AKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
             +L+       +   G TA   ++     D+ E
Sbjct: 122 EVLLKHGADVNAQDALGLTAFDISINQGQEDLAE 155

>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major Length = 364

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 104/262 (39%), Gaps = 33/262 (12%)
Query: 86  LHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVD 145
           +H+AA+KG T  V  LI          E GV         + N    T LH A +   VD
Sbjct: 24  IHVAARKGQTDEVRRLI----------ETGVSPT------IQNRFGCTALHLACKFGCVD 67
Query: 146 VVKILIKADP-----------HVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAAR 194
             K L                H++  AN+    +  +  A    +    +L  C +    
Sbjct: 68  TAKYLASVGEVHSLWHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVN 127
Query: 195 QMLEKTNE-EQNTPLHEAVRL--RRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSA 251
           ++       +  T LH  V L    ++ +KIL++     P + ++  ETPL  A    + 
Sbjct: 128 EIGSHVKHCKGQTALHWCVGLGPEYLEXIKILVQLGAS-PTAKDKADETPLXRAXEFRNR 186
Query: 252 EIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNS 311
           E +       P S +   L+  N++ N+ LH A+ +   DVA   +E    V    N ++
Sbjct: 187 EALDLXXDTVP-SKSSLRLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHT 245
Query: 312 ETPLYMAAANGSVKIVAKILQK 333
             PLY++     V +  ++LQK
Sbjct: 246 -VPLYLSVRAAXVLLTKELLQK 266

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 18/105 (17%)
Query: 82  GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
           G +PLHLAAK+GH  IVE L          L+ G +  AR I         TPLH A  +
Sbjct: 47  GVTPLHLAAKRGHLEIVEVL----------LKHGADVNARDIWG------RTPLHLAATV 90
Query: 142 RSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ 186
             +++V++L++    V+ + ++  +T   +++ NG+ E +AEILQ
Sbjct: 91  GHLEIVEVLLEYGADVN-AQDKFGKTAFDISIDNGN-EDLAEILQ 133

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 22/191 (11%)
Query: 64  VEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQI 123
           V+++L   PSLL Q +  G  PLH +       I  FL+  +  + ++L+   + +    
Sbjct: 18  VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL--SKMENVNLDDYPDDSGW-- 73
Query: 124 LKMTNEEQNTPLHEAVRLRSVDVVKILIKA--DPHVSYSANRNSETLLYMAVANGSAEIV 181
                    TP H A  + +++VVK L      P ++   N+   T L++AV     E+ 
Sbjct: 74  ---------TPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV-TCLHLAVGKKWFEVS 123
Query: 182 AEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETP 241
             +++N    A+ ++ +K N+    PLH A  +  + ++++L           ++   TP
Sbjct: 124 QFLIEN---GASVRIKDKFNQ---IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177
Query: 242 LYMAVANGSAE 252
           L+ A+A G  +
Sbjct: 178 LFHALAEGHGD 188

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 86/193 (44%), Gaps = 12/193 (6%)
Query: 132 NTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQS 191
           N PLH+A        V+ L+ + P +    +++    L+ +V+  + EI + +L      
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 192 AARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKA--DPHVPYSANRNSETPLYMAVANG 249
               + +  ++   TP H A  +  ++VVK L      P +    N+   T L++AV   
Sbjct: 63  ---NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV-TCLHLAVGKK 118
Query: 250 SAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANR 309
             E+   +++N    A+ ++ +K N+    PLH A  + S+ + ++L           ++
Sbjct: 119 WFEVSQFLIEN---GASVRIKDKFNQ---IPLHRAASVGSLKLIELLCGLGKSAVNWQDK 172
Query: 310 NSETPLYMAAANG 322
              TPL+ A A G
Sbjct: 173 QGWTPLFHALAEG 185

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 18/159 (11%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
           L EA R  + D V+IL+     V  + +   +TPL++A   G  EIV  +L+N  +  A 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVN-AEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL 76
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSE-----TPLYMAAANG 322
                     +TPLH A +   +++ ++L++      Y A+ N++     TPL++AA  G
Sbjct: 77  DF------SGSTPLHLAAKRGHLEIVEVLLK------YGADVNADDTIGSTPLHLAADTG 124
Query: 323 SVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
            ++IV  +L+       +   GKTA   ++     D+ E
Sbjct: 125 HLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAE 163

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 22/191 (11%)
Query: 64  VEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQI 123
           V+++L   PSLL Q +  G  PLH +       I  FL+  +  + ++L+   + +    
Sbjct: 18  VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL--SKMENVNLDDYPDDSGW-- 73
Query: 124 LKMTNEEQNTPLHEAVRLRSVDVVKILIKA--DPHVSYSANRNSETLLYMAVANGSAEIV 181
                    TP H A  + +++VVK L      P ++   N+   T L++AV     E+ 
Sbjct: 74  ---------TPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV-TCLHLAVGKKWFEVS 123
Query: 182 AEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETP 241
             +++N    A+ ++ +K N+    PLH A  +  + ++++L           ++   TP
Sbjct: 124 QFLIEN---GASVRIKDKFNQ---IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177
Query: 242 LYMAVANGSAE 252
           L+ A+A G  +
Sbjct: 178 LFHALAEGHGD 188

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 86/193 (44%), Gaps = 12/193 (6%)
Query: 132 NTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQS 191
           N PLH+A        V+ L+ + P +    +++    L+ +V+  + EI + +L      
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 192 AARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKA--DPHVPYSANRNSETPLYMAVANG 249
               + +  ++   TP H A  +  ++VVK L      P +    N+   T L++AV   
Sbjct: 63  ---NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV-TCLHLAVGKK 118
Query: 250 SAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANR 309
             E+   +++N    A+ ++ +K N+    PLH A  + S+ + ++L           ++
Sbjct: 119 WFEVSQFLIEN---GASVRIKDKFNQ---IPLHRAASVGSLKLIELLCGLGKSAVNWQDK 172
Query: 310 NSETPLYMAAANG 322
              TPL+ A A G
Sbjct: 173 QGWTPLFHALAEG 185

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 33/186 (17%)
Query: 1   MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXX 60
           + RKL EAA  G  +  R +  +  +    D    T LH+     HL +           
Sbjct: 14  LGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEI----------V 63
Query: 61  XXFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAA 120
              ++   D+  S +F     G +PLHLAA  GH  IVE L          L+ G +  A
Sbjct: 64  EVLLKHGADVDASDVF-----GYTPLHLAAYWGHLEIVEVL----------LKNGADVNA 108
Query: 121 RQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEI 180
                  + +  TPLH A +   +++V++L+K    V+ + ++  +T   +++ NG+ E 
Sbjct: 109 ------MDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGN-ED 160
Query: 181 VAEILQ 186
           +AEILQ
Sbjct: 161 LAEILQ 166

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 8/154 (5%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
           L EA R  + D V+IL+     V  +A+    TPL++A  +G  EIV  +L++  +  A 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVN-AADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDAS 76
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
            +         TPLH A     +++ ++L++    V  + + +  TPL++AA  G ++IV
Sbjct: 77  DVF------GYTPLHLAAYWGHLEIVEVLLKNGADVN-AMDSDGMTPLHLAAKWGYLEIV 129
Query: 328 AKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
             +L+       +   GKTA   ++     D+ E
Sbjct: 130 EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 163

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 18/159 (11%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
           L EA R  + D V+IL+     V    ++ S TPL++A   G  EIV  +L++  +  AR
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAHDDQGS-TPLHLAAWIGHPEIVEVLLKHGADVNAR 76
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSE-----TPLYMAAANG 322
                 + +  TPLH A     +++ ++L++      Y A+ N++     TPL++AA  G
Sbjct: 77  ------DTDGWTPLHLAADNGHLEIVEVLLK------YGADVNAQDAYGLTPLHLAADRG 124
Query: 323 SVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
            ++IV  +L+       +   GKTA   ++     D+ E
Sbjct: 125 HLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 163

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 22/191 (11%)
Query: 64  VEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQI 123
           V+++L   PSLL Q +  G  PLH +       I  FL+  +  + ++L+   + +    
Sbjct: 18  VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL--SKMENVNLDDYPDDSGW-- 73
Query: 124 LKMTNEEQNTPLHEAVRLRSVDVVKILIKA--DPHVSYSANRNSETLLYMAVANGSAEIV 181
                    TP H A  + +++VVK L      P ++   N+   T L++AV     E+ 
Sbjct: 74  ---------TPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV-TCLHLAVGKKWFEVS 123
Query: 182 AEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETP 241
             +++N    A+ ++ +K N+    PLH A  +  + ++++L           ++   TP
Sbjct: 124 QFLIEN---GASVRIKDKFNQ---IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177
Query: 242 LYMAVANGSAE 252
           L+ A+A G  +
Sbjct: 178 LFHALAEGHGD 188

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 86/193 (44%), Gaps = 12/193 (6%)
Query: 132 NTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQS 191
           N PLH+A        V+ L+ + P +    +++    L+ +V+  + EI + +L      
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 192 AARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKA--DPHVPYSANRNSETPLYMAVANG 249
               + +  ++   TP H A  +  ++VVK L      P +    N+   T L++AV   
Sbjct: 63  ---NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV-TCLHLAVGKK 118
Query: 250 SAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANR 309
             E+   +++N    A+ ++ +K N+    PLH A  + S+ + ++L           ++
Sbjct: 119 WFEVSQFLIEN---GASVRIKDKFNQ---IPLHRAASVGSLKLIELLCGLGKSAVNWQDK 172
Query: 310 NSETPLYMAAANG 322
              TPL+ A A G
Sbjct: 173 QGWTPLFHALAEG 185

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 8/154 (5%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
           L EA R  R D V+IL+     V  + + +  TPL++A  NG  EIV  +L+N  +  A 
Sbjct: 18  LLEAARAGRDDEVRILMANGADVN-AEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA- 75
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
                 +    TPL  A     +++ ++L++    V  + +    TPL++AA  G ++IV
Sbjct: 76  -----VDHAGMTPLRLAALFGHLEIVEVLLKNGADVN-ANDMEGHTPLHLAAMFGHLEIV 129
Query: 328 AKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
             +L+       +   GKTA   ++     D+ E
Sbjct: 130 EVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAE 163

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 17/122 (13%)
Query: 79  NAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEA 138
           +A G +PLHLAA  GH  IVE L          L+ G +  A  I+       +TPLH A
Sbjct: 44  DASGLTPLHLAATYGHLEIVEVL----------LKHGADVNAIDIMG------STPLHLA 87
Query: 139 VRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLE 198
             +  +++V++L+K    V+ + +   +T L++A   G  EIV  +L++     A+    
Sbjct: 88  ALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
Query: 199 KT 200
           KT
Sbjct: 147 KT 148

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 77/154 (50%), Gaps = 8/154 (5%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
           L EA R  + D V+IL+     V  + + +  TPL++A   G  EIV  +L++  +  A 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVN-ATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI 76
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
            ++       +TPLH A  +  +++ ++L++    V  + +   +TPL++AA  G ++IV
Sbjct: 77  DIM------GSTPLHLAALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIV 129
Query: 328 AKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
             +L+       +   GKTA   ++     D+ E
Sbjct: 130 EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 163

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 8/174 (4%)
Query: 163 RNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKI 222
            + ++ L++A+ +    +  E+++      A   L   N  Q TPLH AV   + ++ + 
Sbjct: 3   EDGDSFLHLAIIHEEKALTMEVIRQVKGDLA--FLNFQNNLQQTPLHLAVITNQPEIAEA 60
Query: 223 LIKA--DPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTP 280
           L+ A  DP +    +    TPL++A   G    V  + Q+C       +L+ TN   +T 
Sbjct: 61  LLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 117
Query: 281 LHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKC 334
           LH A     + + ++L+     V      N  T L++A    +  +V+ +L KC
Sbjct: 118 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL-KC 170

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 8/154 (5%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
           L EA R  + D V+IL+     V  +++    TPL++A   G  EIV  +L+N  +  A 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVN-ASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNAD 76
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
             L  T      PLH A     ++V ++L++    V  + + N  TPL++AA  G ++IV
Sbjct: 77  DSLGVT------PLHLAADRGHLEVVEVLLKNGADVN-ANDHNGFTPLHLAANIGHLEIV 129
Query: 328 AKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
             +L+       +   GKTA   ++     D+ E
Sbjct: 130 EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 163

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 33/186 (17%)
Query: 1   MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXX 60
           + +KL EAA  G  +  R +  +  +    D    T LH+ +   HL +           
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEI----------- 62
Query: 61  XXFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAA 120
              +E +L     +   ++  G +PLHLAA +GH  IVE L          L+ G +  A
Sbjct: 63  ---IEVLLKYAADV-NASDKSGWTPLHLAAYRGHLEIVEVL----------LKYGADVNA 108
Query: 121 RQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEI 180
                  + +  TPLH A     +++V++L+K    V+ + ++  +T   +++ NG+ E 
Sbjct: 109 ------MDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN-AQDKFGKTAFDISIDNGN-ED 160
Query: 181 VAEILQ 186
           +AEILQ
Sbjct: 161 LAEILQ 166

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 24/162 (14%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSE---TPLYMAVANGSAEIVAEILQNCPES 264
           L EA R  + D V+IL+     V    N N     TPL++ V NG  EI+  +L+   + 
Sbjct: 18  LLEAARAGQDDEVRILMANGADV----NANDWFGITPLHLVVNNGHLEIIEVLLKYAADV 73
Query: 265 AARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSE-----TPLYMAA 319
            A      +++   TPLH A     +++ ++L++      Y A+ N+      TPL++AA
Sbjct: 74  NA------SDKSGWTPLHLAAYRGHLEIVEVLLK------YGADVNAMDYQGYTPLHLAA 121
Query: 320 ANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
            +G ++IV  +L+       +   GKTA   ++     D+ E
Sbjct: 122 EDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAE 163

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 18/105 (17%)
Query: 82  GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
           G +PLHLAAK+GH  IVE L          L+ G +  A  I         TPLH A  +
Sbjct: 47  GVTPLHLAAKRGHLEIVEVL----------LKHGADVNASDIWG------RTPLHLAATV 90
Query: 142 RSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ 186
             +++V++L++    V+ + ++  +T   +++ NG+ E +AEILQ
Sbjct: 91  GHLEIVEVLLEYGADVN-AQDKFGKTAFDISIDNGN-EDLAEILQ 133

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 20/116 (17%)
Query: 72  PSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQ 131
           PSL+   + +G S +HLAA+ GHT+IV +LI  A  Q +D              M ++  
Sbjct: 102 PSLI---DGEGCSCIHLAAQFGHTSIVAYLI--AKGQDVD--------------MMDQNG 142
Query: 132 NTPL-HEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ 186
            TPL   A R  SVD  ++L+  +  V+     +  T L+ AV  G+  +++ +L+
Sbjct: 143 MTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE 198

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 7/148 (4%)
Query: 201 NEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQN 260
           N E +  L EA +   V+ VK L                TPL+ A       +V  +LQ+
Sbjct: 7   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 66
Query: 261 CPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAA 320
             +  A+      ++    PLH A      +VA++L++    V   A+    TPL+ AAA
Sbjct: 67  GADVHAK------DKGGLVPLHNACSYGHYEVAELLVKHGA-VVNVADLWKFTPLHEAAA 119
Query: 321 NGSVKIVAKILQKCPSPAHEGPDGKTAL 348
            G  +I   +LQ    P  +  DG T L
Sbjct: 120 KGKYEICKLLLQHGADPTKKNRDGNTPL 147

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 7/148 (4%)
Query: 201 NEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQN 260
           N E +  L EA +   V+ VK L                TPL+ A       +V  +LQ+
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64
Query: 261 CPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAA 320
             +  A+      ++    PLH A      +VA++L++    V   A+    TPL+ AAA
Sbjct: 65  GADVHAK------DKGGLVPLHNACSYGHYEVAELLVKHGA-VVNVADLWKFTPLHEAAA 117
Query: 321 NGSVKIVAKILQKCPSPAHEGPDGKTAL 348
            G  +I   +LQ    P  +  DG T L
Sbjct: 118 KGKYEICKLLLQHGADPTKKNRDGNTPL 145

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 17/122 (13%)
Query: 79  NAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEA 138
           +A G +PLHLAA  GH  IVE L          L+ G +  A  I        +TPLH A
Sbjct: 44  DASGLTPLHLAATYGHLEIVEVL----------LKHGADVNAIDIXG------STPLHLA 87
Query: 139 VRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLE 198
             +  +++V++L+K    V+ + +   +T L++A   G  EIV  +L++     A+    
Sbjct: 88  ALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
Query: 199 KT 200
           KT
Sbjct: 147 KT 148

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 8/154 (5%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
           L EA R  + D V+IL+     V  + + +  TPL++A   G  EIV  +L++  +  A 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVN-ATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI 76
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
            +        +TPLH A  +  +++ ++L++    V  + +   +TPL++AA  G ++IV
Sbjct: 77  DI------XGSTPLHLAALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIV 129
Query: 328 AKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
             +L+       +   GKTA   ++     D+ E
Sbjct: 130 EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 163

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 7/148 (4%)
Query: 201 NEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQN 260
           N E +  L EA +   V+ VK L                TPL+ A       +V  +LQ+
Sbjct: 9   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 68
Query: 261 CPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAA 320
             +  A+      ++    PLH A      +VA++L++    V   A+    TPL+ AAA
Sbjct: 69  GADVHAK------DKGGLVPLHNACSYGHYEVAELLVKHGA-VVNVADLWKFTPLHEAAA 121
Query: 321 NGSVKIVAKILQKCPSPAHEGPDGKTAL 348
            G  +I   +LQ    P  +  DG T L
Sbjct: 122 KGKYEICKLLLQHGADPTKKNRDGNTPL 149

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 8/174 (4%)
Query: 163 RNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKI 222
            + ++ L++A+ +    +  E+++      A   L   N  Q TPLH AV   + ++ + 
Sbjct: 6   EDGDSFLHLAIIHEEKALTMEVIRQVKGDLA--FLNFQNNLQQTPLHLAVITNQPEIAEA 63
Query: 223 LIKA--DPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTP 280
           L+ A  DP +    +    TPL++A   G    V  + Q+C       +L+ TN   +T 
Sbjct: 64  LLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 120
Query: 281 LHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKC 334
           LH A     + + ++L+     V      N  T L++A    +  +V+ +L KC
Sbjct: 121 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL-KC 173

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 18/150 (12%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
           L EA R  + D V+ILI     V  + +    TPL++A  +G  EIV  +L++  +  A 
Sbjct: 18  LLEAARAGQDDEVRILIANGADVN-AVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAA 76
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNS-----ETPLYMAAANG 322
            +         TPLH A     +++ ++L++      Y A+ N+      TPL++AA  G
Sbjct: 77  DVY------GFTPLHLAAMTGHLEIVEVLLK------YGADVNAFDMTGSTPLHLAADEG 124
Query: 323 SVKIVAKILQKCPSPAHEGPDGKTALHAAV 352
            ++IV  +L+       +   GKTA   ++
Sbjct: 125 HLEIVEVLLKYGADVNAQDKFGKTAFDISI 154

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 58/105 (55%), Gaps = 18/105 (17%)
Query: 82  GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
           G +PLHLAAK+GH  IVE L          L+ G +  A      ++    TPLH A  +
Sbjct: 47  GVTPLHLAAKRGHLEIVEVL----------LKHGADVNA------SDSWGRTPLHLAATV 90
Query: 142 RSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ 186
             +++V++L++    V+ + ++  +T   +++ NG+ E +AEILQ
Sbjct: 91  GHLEIVEVLLEYGADVN-AQDKFGKTAFDISIDNGN-EDLAEILQ 133

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 31/134 (23%)
Query: 76  FQANAKGDSPLHLAAKKGHTAIVEFLI---------VFANRQPID--------------L 112
           F  +  G SPLHLAA+ GH +  E L+            +R P+               L
Sbjct: 28  FTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLL 87
Query: 113 ERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMA 172
           + G +  A+ +LKM      T LH A      +VV++LIK    V ++ ++  +T   ++
Sbjct: 88  KHGADVNAKDMLKM------TALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDIS 140
Query: 173 VANGSAEIVAEILQ 186
           + NG+ E +AEILQ
Sbjct: 141 IDNGN-EDLAEILQ 153

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 18/106 (16%)
Query: 81  KGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVR 140
           KG++PLHLAA   H  IVE L          L+ G +  A       + + +TPLH A  
Sbjct: 46  KGNTPLHLAADYDHLEIVEVL----------LKHGADVNAH------DNDGSTPLHLAAL 89
Query: 141 LRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ 186
              +++V++L+K    V+ + ++  +T   +++ NG+ E +AEILQ
Sbjct: 90  FGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGN-EDLAEILQ 133

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 201 NEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQN 260
           +++ NTPLH A +    + VK L+     V  + +++  TPL++A  NG AEIV  +L  
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 261 CPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKIL 296
             +  AR      +++ NTP H A +    ++ K+L
Sbjct: 65  GADVNAR------SKDGNTPEHLAKKNGHHEIVKLL 94

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 18/105 (17%)
Query: 82  GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
           G +PLHLAA  GH  IVE L          L+ G +  A      T     TPLH A   
Sbjct: 47  GHTPLHLAAMLGHLEIVEVL----------LKNGADVNA------TGNTGRTPLHLAAWA 90
Query: 142 RSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ 186
             +++V++L+K    V+ + ++  +T   +++ NG+ E +AEILQ
Sbjct: 91  DHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGN-EDLAEILQ 133

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 9/126 (7%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
           L EA R  + D V+IL+     V  + +    TPLY+A A+G  EIV  +L+N  +  A 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVN-AKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
             +        TPLH A  +  +++A++L++    V  + ++  +T   ++  NG+ + +
Sbjct: 77  DAI------GFTPLHLAAFIGHLEIAEVLLKHGADVN-AQDKFGKTAFDISIGNGN-EDL 128
Query: 328 AKILQK 333
           A+ILQK
Sbjct: 129 AEILQK 134

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	556
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-45
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-45
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-42
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-39
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-27
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-25
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-41
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-18
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-41
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-36
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-32
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-23
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-20
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-41
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-37
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-27
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-26
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-16
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-40
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-28
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-21
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-40
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-38
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-37
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-39
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-36
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-26
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-23
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-39
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-33
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-23
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-39
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-30
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-24
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-23
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-38
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-36
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-23
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-16
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-37
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-36
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-29
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-37
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-33
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-12
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-36
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-30
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-24
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-35
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-31
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-25
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-35
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-30
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-28
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-16
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-35
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-18
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-34
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-32
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-27
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-23
2pnn_A	273	Transient receptor potential cation channel subfa	2e-29
2pnn_A	273	Transient receptor potential cation channel subfa	5e-21
2pnn_A	273	Transient receptor potential cation channel subfa	7e-16
2pnn_A	273	Transient receptor potential cation channel subfa	4e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-28
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-24
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-20
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-17
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-10
2rfa_A	232	Transient receptor potential cation channel subfa	1e-28
2rfa_A	232	Transient receptor potential cation channel subfa	7e-26
2rfa_A	232	Transient receptor potential cation channel subfa	2e-19
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-28
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-27
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-24
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-08
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-26
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-24
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	8e-23
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-19
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-16
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-14
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-26
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-22
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-22
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-16
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-26
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-25
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-24
3v30_A	172	DNA-binding protein rfxank; structural genomics co	9e-21
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-25
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-23
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-20
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-25
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-20
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-25
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-22
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-21
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-25
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-22
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-25
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-15
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-08
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	9e-25
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-20
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-20
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-13
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-25
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-22
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-22
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-18
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-14
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-24
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-19
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-16
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	8e-14
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-23
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-20
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-23
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-20
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-20
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-19
2etb_A	256	Transient receptor potential cation channel subfam	2e-23
2etb_A	256	Transient receptor potential cation channel subfam	6e-23
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-22
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-20
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-15
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-12
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-22
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-20
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-20
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-16
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-21
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-20
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-18
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-15
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-09
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-20
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-18
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-17
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-09
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-19
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-18
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-15
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	9e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-11
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-19
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-18
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-15
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-14
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-13
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-08
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-19
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-18
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-15
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-10
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-19
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-18
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-15
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-17
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-16
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-16
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-15
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-13
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-16
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-15
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-15
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-14
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-14
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-14
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-10
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-13
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-12
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-12
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-10
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-09
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-09
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-13
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-12
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-11
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	9e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-10
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	8e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-09
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	7e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-06

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  165 bits (420), Expect = 1e-45
 Identities = 71/290 (24%), Positives = 120/290 (41%), Gaps = 43/290 (14%)

Query: 78  ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
              KG +PLH+AAK G   + E L+          ER              +   TPLH 
Sbjct: 142 MTKKGFTPLHVAAKYGKVRVAELLL----------ERDAH------PNAAGKNGLTPLHV 185

Query: 138 AVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQ 195
           AV   ++D+VK+L+     PH   S   N  T L++A      E+   +LQ         
Sbjct: 186 AVHHNNLDIVKLLLPRGGSPH---SPAWNGYTPLHIAAKQNQVEVARSLLQYGGS----- 237

Query: 196 MLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEI 253
                + +  TPLH A +    ++V +L+   A+ ++    N++  TPL++    G   +
Sbjct: 238 -ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL---GNKSGLTPLHLVAQEGHVPV 293

Query: 254 VAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNS 311
              ++++         ++ T     TPLH A    ++ + K L++  AD +   +  +  
Sbjct: 294 ADVLIKHGVM------VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN---AKTKLG 344

Query: 312 ETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
            +PL+ AA  G   IV  +L+   SP     DG T L  A       + +
Sbjct: 345 YSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTD 394

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  164 bits (417), Expect = 3e-45
 Identities = 78/297 (26%), Positives = 137/297 (46%), Gaps = 44/297 (14%)

Query: 78  ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
           +N K ++PLH+AA+ GHT + ++L+          +   +  A+       ++  TPLH 
Sbjct: 43  SNVKVETPLHMAARAGHTEVAKYLL----------QNKAKVNAK------AKDDQTPLHC 86

Query: 138 AVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQ 195
           A R+   ++VK+L++  A+P++   A     T L++A   G  E V  +L+         
Sbjct: 87  AARIGHTNMVKLLLENNANPNL---ATTAGHTPLHIAAREGHVETVLALLEKEAS----- 138

Query: 196 MLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEI 253
                 ++  TPLH A +  +V V ++L++  A P+   +A +N  TPL++AV + + +I
Sbjct: 139 -QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN---AAGKNGLTPLHVAVHHNNLDI 194

Query: 254 VAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNS 311
           V  +L                    TPLH A +   V+VA+ L++     +     +   
Sbjct: 195 VKLLLPRGGS------PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE---SVQG 245

Query: 312 ETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRG 368
            TPL++AA  G  ++VA +L K  +       G T LH         + + VLI  G
Sbjct: 246 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVAD-VLIKHG 301

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  156 bits (398), Expect = 1e-42
 Identities = 76/297 (25%), Positives = 124/297 (41%), Gaps = 44/297 (14%)

Query: 78  ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
               G +PLH+A+  GH  IV+ L+          +RG          ++N +  TPLH 
Sbjct: 10  GGESGLTPLHVASFMGHLPIVKNLL----------QRGAS------PNVSNVKVETPLHM 53

Query: 138 AVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQ 195
           A R    +V K L++  A  +   +  ++ +T L+ A   G   +V  +L+N     A  
Sbjct: 54  AARAGHTEVAKYLLQNKAKVN---AKAKDDQTPLHCAARIGHTNMVKLLLEN----NAN- 105

Query: 196 MLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEI 253
                    +TPLH A R   V+ V  L++  A         +   TPL++A   G   +
Sbjct: 106 -PNLATTAGHTPLHIAAREGHVETVLALLEKEASQA---CMTKKGFTPLHVAAKYGKVRV 161

Query: 254 VAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNS 311
              +L+               +   TPLH AV   ++D+ K+L+     PH   S   N 
Sbjct: 162 AELLLERDAH------PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH---SPAWNG 212

Query: 312 ETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRG 368
            TPL++AA    V++   +LQ   S   E   G T LH A      +++  +L+ + 
Sbjct: 213 YTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVA-LLLSKQ 268

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  149 bits (378), Expect = 1e-39
 Identities = 61/285 (21%), Positives = 108/285 (37%), Gaps = 48/285 (16%)

Query: 77  QANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLH 136
            A   G +PLH+A    +  IV+ L+           RG                 TPLH
Sbjct: 174 AAGKNGLTPLHVAVHHNNLDIVKLLL----------PRGGS------PHSPAWNGYTPLH 217

Query: 137 EAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAAR 194
            A +   V+V + L++     +   + +    T L++A   G AE+VA +L         
Sbjct: 218 IAAKQNQVEVARSLLQYGGSAN---AESVQGVTPLHLAAQEGHAEMVALLLSKQAN---- 270

Query: 195 QMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAE 252
                 N+   TPLH   +   V V  +LIK         +  R   TPL++A   G+ +
Sbjct: 271 --GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD---ATTRMGYTPLHVASHYGNIK 325

Query: 253 IVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRN 310
           +V  +LQ+  +      +    +   +PLH+A +    D+  +L++  A P+     + +
Sbjct: 326 LVKFLLQHQAD------VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE---VSSD 376

Query: 311 SETPLYMAAANGSVKIVAKILQKCPS----PAHEGPDGKTALHAA 351
             TPL +A   G + +   +L+                 +     
Sbjct: 377 GTTPLAIAKRLGYISVT-DVLKVVTDETSFVLVSDKHRMSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  113 bits (286), Expect = 2e-27
 Identities = 46/229 (20%), Positives = 92/229 (40%), Gaps = 46/229 (20%)

Query: 79  NAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEA 138
           + +G +PLHLAA++GH  +V  L+           +             N+   TPLH  
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALLL----------SKQANGNLG------NKSGLTPLHLV 285

Query: 139 VRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQM 196
            +   V V  +LIK         +  R   T L++A   G+ ++V  +LQ+         
Sbjct: 286 AQEGHVPVADVLIKHGVMVD---ATTRMGYTPLHVASHYGNIKLVKFLLQHQAD------ 336

Query: 197 LEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIV 254
           +    +   +PLH+A +    D+V +L+K  A P+     + +  TPL +A   G   + 
Sbjct: 337 VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE---VSSDGTTPLAIAKRLGYISVT 393

Query: 255 AEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADP 301
            ++L+   +  +   +  +++ + +                +++   D 
Sbjct: 394 -DVLKVVTDETS--FVLVSDKHRMSFPE---------TVDEILDVSEDE 430

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  108 bits (272), Expect = 1e-25
 Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 17/175 (9%)

Query: 198 EKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIVA 255
               E   TPLH A  +  + +VK L++  A P+    +N   ETPL+MA   G  E+  
Sbjct: 8   GGGGESGLTPLHVASFMGHLPIVKNLLQRGASPN---VSNVKVETPLHMAARAGHTEVAK 64

Query: 256 EILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSET 313
            +LQN    A    +    ++  TPLH A R+   ++ K+L+E  A+P++   A     T
Sbjct: 65  YLLQN---KA---KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL---ATTAGHT 115

Query: 314 PLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRG 368
           PL++AA  G V+ V  +L+K  S A     G T LH A       + E +L+ R 
Sbjct: 116 PLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAE-LLLERD 169

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  150 bits (381), Expect = 1e-41
 Identities = 64/330 (19%), Positives = 109/330 (33%), Gaps = 93/330 (28%)

Query: 78  ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
           A  + +  L  A +     +V+ L+          E G       +     E   TPLH 
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLL----------EGGAN-----VNFQEEEGGWTPLHN 45

Query: 138 AVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIV-------AEILQNC 188
           AV++   D+V++L++  ADP       +N  T   +A   GS +++       A++    
Sbjct: 46  AVQMSREDIVELLLRHGADPV---LRKKNGATPFLLAAIAGSVKLLKLFLSKGADV---- 98

Query: 189 PQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKA---------DPHVPYSANRNSE 239
                     + +    T   EA    +V  +K L K                   +   
Sbjct: 99  ---------NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGA 149

Query: 240 TPLYMAVANGSAEIV--------AEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVD 291
           T L  A   G  E++        A++                +      L  A+      
Sbjct: 150 TALMDAAEKGHVEVLKILLDEMGADV-------------NACDNMGRNALIHALLSSDDS 196

Query: 292 ----VAKILIE--ADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPD-- 343
               +  +L++  AD +V        +TPL +A     + +V ++L        E  +  
Sbjct: 197 DVEAITHLLLDHGADVNV---RGERGKTPLILAVEKKHLGLVQRLL------EQEHIEIN 247

Query: 344 -----GKTALHAAVYTYPTDILERVLIVRG 368
                GKTAL  AV      I E +L  RG
Sbjct: 248 DTDSDGKTALLLAVELKLKKIAE-LLCKRG 276

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 83.3 bits (207), Expect = 6e-18
 Identities = 31/160 (19%), Positives = 58/160 (36%), Gaps = 31/160 (19%)

Query: 77  QANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLH 136
           +    G + L  AA+KGH  +++ L+          E G +      +   +      L 
Sbjct: 143 RLRKGGATALMDAAEKGHVEVLKILL---------DEMGAD------VNACDNMGRNALI 187

Query: 137 EAVRLRSVD----VVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQ 190
            A+          +  +L+   AD +V        +T L +AV      +V  +L+    
Sbjct: 188 HALLSSDDSDVEAITHLLLDHGADVNV---RGERGKTPLILAVEKKHLGLVQRLLEQE-- 242

Query: 191 SAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADP 228
                 +  T+ +  T L  AV L+   + ++L K  A  
Sbjct: 243 -HIE--INDTDSDGKTALLLAVELKLKKIAELLCKRGAST 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  149 bits (378), Expect = 3e-41
 Identities = 59/302 (19%), Positives = 104/302 (34%), Gaps = 57/302 (18%)

Query: 82  GDSPLHLAAKKGHTAIVEFLIVF-ANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVR 140
           GD+ LHLA    H   ++FL+ F A  + +D              + N+   T LH A  
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLD--------------LQNDLGQTALHLAAI 54

Query: 141 LRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIV-------AEILQNCPQS 191
           L     V+ L    A   V   A R   T L++A    +               ++   +
Sbjct: 55  LGEASTVEKLYAAGAGVLV---AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDT 111

Query: 192 AARQMLEKTNEEQNTPLHEAVRLR-RVDVVKILI--KADPHVPYSANRNSETPLYMAVAN 248
              Q  + T +  + P     +     +        +         N +  TPL++AV +
Sbjct: 112 YLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA---ENYDGHTPLHVAVIH 168

Query: 249 GSAEIV-------AEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--A 299
             AE+V       A++  N          +       TPLH AV  ++  V ++L++  A
Sbjct: 169 KDAEMVRLLRDAGADL--N----------KPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216

Query: 300 DPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDI 359
           DP    +      TPL  A    +  +   +         +G D  +   ++     +D 
Sbjct: 217 DPT---ARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDN 273

Query: 360 LE 361
            +
Sbjct: 274 RD 275

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  134 bits (340), Expect = 7e-36
 Identities = 54/274 (19%), Positives = 95/274 (34%), Gaps = 64/274 (23%)

Query: 78  ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
            N  G + LHLAA  G  + VE L             G        + +     +T LH 
Sbjct: 41  QNDLGQTALHLAAILGEASTVEKLY----------AAGAG------VLVAERGGHTALHL 84

Query: 138 AVRLRSVDVVKILIK---------ADPHVSYSANRNSET----LLYMAVANGSAEIVAEI 184
           A R+R+     +L++         +D +++ S +   +T        +  N   E     
Sbjct: 85  ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRD 144

Query: 185 LQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPL 242
                Q      LE  N + +TPLH AV  +  ++V++L    AD + P        TPL
Sbjct: 145 EDWRLQ------LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP--EPTCGRTPL 196

Query: 243 YMAVANGSAEIV-------AEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKI 295
           ++AV   +A ++       A+                      TPL  A+   +  +A++
Sbjct: 197 HLAVEAQAASVLELLLKAGADP-------------TARMYGGRTPLGSALLRPNPILARL 243

Query: 296 LIE--ADPHVPYSANRNSETPLYMAAANGSVKIV 327
           L    A          +  +P   + ++      
Sbjct: 244 LRAHGAPEP---EDGGDKLSPCSSSGSDSDSDNR 274

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  124 bits (315), Expect = 2e-32
 Identities = 48/247 (19%), Positives = 92/247 (37%), Gaps = 29/247 (11%)

Query: 123 ILKMTNEEQNTPLHEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEI 180
           +     E+ +T LH AV  +    +  L+   A        N   +T L++A   G A  
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 181 VAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK---------ADPHVP 231
           V ++            +       +T LH A R+R      +L++         +D ++ 
Sbjct: 61  VEKLYAAGAG------VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLT 114

Query: 232 YSANRNSE---TPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLR 288
            S +   +    P  +              ++         LE  N + +TPLH AV  +
Sbjct: 115 QSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ-----LEAENYDGHTPLHVAVIHK 169

Query: 289 SVDVAKILIE--ADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKT 346
             ++ ++L +  AD + P        TPL++A    +  ++  +L+    P      G+T
Sbjct: 170 DAEMVRLLRDAGADLNKP--EPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRT 227

Query: 347 ALHAAVY 353
            L +A+ 
Sbjct: 228 PLGSALL 234

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 98.8 bits (247), Expect = 3e-23
 Identities = 38/203 (18%), Positives = 69/203 (33%), Gaps = 26/203 (12%)

Query: 197 LEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIV 254
                E+ +T LH AV  +    +  L+   A        N   +T L++A   G A  V
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 255 AEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE---------ADPHVPY 305
            ++            +       +T LH A R+R+   A +L++         +D ++  
Sbjct: 62  EKLYAAGAG------VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ 115

Query: 306 SANRNSE---TPLYMAAANGSVKIVAKIL-QKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
           S +   +    P  + +                     E  DG T LH AV     +++ 
Sbjct: 116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR 175

Query: 362 RVLIVRGTFKPQEIQELSKNVGR 384
            +L   G     ++ +     GR
Sbjct: 176 -LLRDAGA----DLNKPEPTCGR 193

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 89.1 bits (222), Expect = 5e-20
 Identities = 26/189 (13%), Positives = 61/189 (32%), Gaps = 42/189 (22%)

Query: 81  KGDSPLHLAAKK-GHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAV 139
              +P  + ++                      +  ++      L+  N + +TPLH AV
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDE----------DWRLQ------LEAENYDGHTPLHVAV 166

Query: 140 RLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIV-------AEILQNCPQSA 192
             +  ++V++L  A   ++        T L++AV   +A ++       A+         
Sbjct: 167 IHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-------- 218

Query: 193 ARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGS 250
                        TPL  A+      + ++L    A          +  +P   + ++  
Sbjct: 219 -----TARMYGGRTPLGSALLRPNPILARLLRAHGAPEP---EDGGDKLSPCSSSGSDSD 270

Query: 251 AEIVAEILQ 259
           ++   E  +
Sbjct: 271 SDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 70.7 bits (174), Expect = 1e-13
 Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 25/114 (21%)

Query: 79  NAK----GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTP 134
           N      G +PLHLA +    +++E L+          + G +  AR           TP
Sbjct: 185 NKPEPTCGRTPLHLAVEAQAASVLELLL----------KAGADPTAR------MYGGRTP 228

Query: 135 LHEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ 186
           L  A+   +  + ++L    A          +  +    + ++  ++   E  +
Sbjct: 229 LGSALLRPNPILARLLRAHGAPEP---EDGGDKLSPCSSSGSDSDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 46.8 bits (112), Expect = 7e-06
 Identities = 10/79 (12%), Positives = 20/79 (25%), Gaps = 19/79 (24%)

Query: 79  NAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPL 135
            A+   G +PL  A  + +  +   L             G              ++ +P 
Sbjct: 219 TARMYGGRTPLGSALLRPNPILARLLR----------AHGAP------EPEDGGDKLSPC 262

Query: 136 HEAVRLRSVDVVKILIKAD 154
             +      D      + D
Sbjct: 263 SSSGSDSDSDNRDEGDEYD 281

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  146 bits (370), Expect = 1e-40
 Identities = 60/270 (22%), Positives = 110/270 (40%), Gaps = 52/270 (19%)

Query: 78  ANAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTP 134
           A      GD+PLH+A  +G+   V  L+    +   +L+            + N  + TP
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD------------IYNNLRQTP 49

Query: 135 LHEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSA 192
           LH AV      VV++L+   A P    + +R+ +T  ++A  + S   +  +L +   + 
Sbjct: 50  LHLAVITTLPSVVRLLVTAGASPM---ALDRHGQTAAHLACEHRSPTCLRALLDSA--AP 104

Query: 193 ARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGS 250
               LE  N +  T LH AV     + V++L++  AD        ++  +PL  AV N S
Sbjct: 105 GTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDA--VDIKSGRSPLIHAVENNS 162

Query: 251 AEIV-------AEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADP 301
             +V       A +                    ++ LH A     + + + L+   AD 
Sbjct: 163 LSMVQLLLQHGANV-------------NAQMYSGSSALHSASGRGLLPLVRTLVRSGADS 209

Query: 302 HVPYSANRNSETPLYMAAANGSVKIVAKIL 331
            +    N +++TPL +A +   + I+ +  
Sbjct: 210 SL---KNCHNDTPLMVARSRRVIDIL-RGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  113 bits (285), Expect = 1e-28
 Identities = 45/261 (17%), Positives = 88/261 (33%), Gaps = 66/261 (25%)

Query: 60  STEFVEQILDLCPSLLFQANAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGV 116
           +   V ++++L      + +       +PLHLA      ++V  L+            G 
Sbjct: 21  NLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV----------TAGA 70

Query: 117 ESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSY---SANRNSETLLYMAV 173
              A       +    T  H A   RS   ++ L+ +    +    + N +  T L++AV
Sbjct: 71  SPMAL------DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 124

Query: 174 ANGSAEIV-------AEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK- 225
                E V       A+I  +              +   +PL  AV    + +V++L++ 
Sbjct: 125 NTECQETVQLLLERGADI--D----------AVDIKSGRSPLIHAVENNSLSMVQLLLQH 172

Query: 226 -ADPHVPYSANRNSETPLYMAVANGSAEIV-------AEILQNCPESAARQMLEKTNEEQ 277
            A+ +   +   +  + L+ A   G   +V       A+                 N   
Sbjct: 173 GANVN---AQMYSGSSALHSASGRGLLPLVRTLVRSGADS-------------SLKNCHN 216

Query: 278 NTPLHEAVRLRSVDVAKILIE 298
           +TPL  A   R +D+ +    
Sbjct: 217 DTPLMVARSRRVIDILRGKAT 237

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 92.5 bits (231), Expect = 2e-21
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 34/190 (17%)

Query: 196 MLEKTNEEQNTPLHEAVRLRRVDVVKILIK------ADPHVPYSANRNSETPLYMAVANG 249
           M  + +E+ +TPLH AV    +  V  L+        +       N   +TPL++AV   
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD---IYNNLRQTPLHLAVITT 57

Query: 250 SAEIV-------AEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPH 302
              +V       A                  +    T  H A   RS    + L+++   
Sbjct: 58  LPSVVRLLVTAGASP-------------MALDRHGQTAAHLACEHRSPTCLRALLDSAAP 104

Query: 303 VPY---SANRNSETPLYMAAANGSVKIVAKILQKCPSP-AHEGPDGKTALHAAVYTYPTD 358
                 + N +  T L++A      + V  +L++     A +   G++ L  AV      
Sbjct: 105 GTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS 164

Query: 359 ILERVLIVRG 368
           +++ +L+  G
Sbjct: 165 MVQ-LLLQHG 173

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 61.7 bits (151), Expect = 6e-11
 Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 10/119 (8%)

Query: 269 MLEKTNEEQNTPLHEAVRLRSVDVAKILIE------ADPHVPYSANRNSETPLYMAAANG 322
           M  + +E+ +TPLH AV   ++     L+        +       N   +TPL++A    
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD---IYNNLRQTPLHLAVITT 57

Query: 323 SVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRGTFKPQEIQELSKN 381
              +V  ++    SP      G+TA H A        L   L+        +++  + +
Sbjct: 58  LPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLR-ALLDSAAPGTLDLEARNYD 115

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  148 bits (377), Expect = 3e-40
 Identities = 62/310 (20%), Positives = 113/310 (36%), Gaps = 64/310 (20%)

Query: 78  ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
            N  G + LHLA K G     ++L             G   +              P+H 
Sbjct: 49  QNRFGCTALHLACKFGCVDTAKYLA----------SVGEVHSLW--------HGQKPIHL 90

Query: 138 AVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQML 197
           AV     D+V  L+        +  R  +    +       E+  EI  +          
Sbjct: 91  AVMANKTDLVVALV------EGAKERG-QMPESLLNECDEREVN-EIGSH---------- 132

Query: 198 EKTNEEQNTPLHEAVRL--RRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEI 253
            K  + Q T LH  V L    ++++KIL++  A P    + ++  ETPL  A+   + E 
Sbjct: 133 VKHCKGQ-TALHWCVGLGPEYLEMIKILVQLGASPT---AKDKADETPLMRAMEFRNREA 188

Query: 254 VAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNS 311
           + +++ +   S +   L+  N++ N+ LH A+ +   DVA   +E   D +     +   
Sbjct: 189 L-DLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVN---MEDNEH 244

Query: 312 ETPLYMAAANGSVKIVAKILQKCPS-------------PAHEGPDGKTALHAAVYTYPTD 358
             PLY++     V +  ++LQK                   +       + AA      +
Sbjct: 245 TVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQE 304

Query: 359 ILERVLIVRG 368
           +L+ +L  + 
Sbjct: 305 VLQ-LLQEKL 313

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  143 bits (363), Expect = 3e-38
 Identities = 45/295 (15%), Positives = 93/295 (31%), Gaps = 51/295 (17%)

Query: 74  LLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNT 133
           L+  A  +G  P  L  +     + E                          + + +  T
Sbjct: 103 LVEGAKERGQMPESLLNECDEREVNEIGS----------------------HVKHCKGQT 140

Query: 134 PLHEAVRL--RSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCP 189
            LH  V L    ++++KIL++  A P    + ++  ET L  A+   + E + +++ +  
Sbjct: 141 ALHWCVGLGPEYLEMIKILVQLGASPT---AKDKADETPLMRAMEFRNREAL-DLMMDTV 196

Query: 190 QSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILI--KADPHVPYSANRNSETPLYMAVA 247
            S +   L+  N++ N+ LH A+ +   DV    +    D +     +     PLY++V 
Sbjct: 197 PSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVN---MEDNEHTVPLYLSVR 253

Query: 248 NGSAEIVAEIL---------QNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE 298
                +  + L         Q CP      +L          +  A      +V ++L E
Sbjct: 254 AAMVLLT-KELLQKTDVFLIQACPYHNGTTVLPDRVVWL-DFVPAAADPSKQEVLQLLQE 311

Query: 299 --ADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAA 351
              +      +               +  +    L               +   +
Sbjct: 312 KLDEVVR---SLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  140 bits (354), Expect = 4e-37
 Identities = 50/306 (16%), Positives = 99/306 (32%), Gaps = 69/306 (22%)

Query: 78  ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
           ++ +    +H+AA+KG T  V  LI          E GV    +      N    T LH 
Sbjct: 16  SDDENMEKIHVAARKGQTDEVRRLI----------ETGVSPTIQ------NRFGCTALHL 59

Query: 138 AVRLRSVDVVKILIKADPHVSYSAN---RNSETLLYMAVANGSAEIVAEILQNCPQSAAR 194
           A +   VD  K L       S        + +  +++AV     ++V   L         
Sbjct: 60  ACKFGCVDTAKYLA------SVGEVHSLWHGQKPIHLAVMANKTDLV-VAL--------- 103

Query: 195 QMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEI- 253
             +E   E    P          +V +I            +   +T L+  V  G   + 
Sbjct: 104 --VEGAKERGQMPESLLNECDEREVNEIGSHV-------KHCKGQTALHWCVGLGPEYLE 154

Query: 254 VAEILQNCPESAARQMLEK------TNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSA 307
           + +IL           ++        ++   TPL  A+  R+ +   ++++  P    S 
Sbjct: 155 MIKIL-----------VQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPS-KSSL 202

Query: 308 NRNS-----ETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILER 362
             +       + L+ A       +  + ++       E  +    L+ +V      + + 
Sbjct: 203 RLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTK- 261

Query: 363 VLIVRG 368
            L+ + 
Sbjct: 262 ELLQKT 267

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  144 bits (366), Expect = 7e-39
 Identities = 68/316 (21%), Positives = 117/316 (37%), Gaps = 56/316 (17%)

Query: 77  QANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLH 136
               K D  L  A       ++  L              V          ++  ++TPLH
Sbjct: 20  TGEYKKDELLEAARSGNEEKLMALLT----------PLNVN------CHASDGRKSTPLH 63

Query: 137 EAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAAR 194
            A     V +V++L++  AD H     ++     L+ A + G  E+   +L++       
Sbjct: 64  LAAGYNRVRIVQLLLQHGADVHA---KDKGGLVPLHNACSYGHYEVTELLLKHGAC---- 116

Query: 195 QMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAE 252
             +   +  Q TPLHEA    RV+V  +L+   ADP      N + ++ + MA      E
Sbjct: 117 --VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT---LVNCHGKSAVDMAPTPELRE 171

Query: 253 IVA-EILQNCPESAARQM--------------LEKTNEEQNTPLHEAVR---LRSVDVAK 294
            +  E   +    AAR+                 K  +   T LH AV     +   VA+
Sbjct: 172 RLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAE 231

Query: 295 ILIE--ADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAV 352
           +L+   A+ +     N++  TPL++AA      ++  + +           G+TALH A 
Sbjct: 232 LLLRKGANVN---EKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAA 288

Query: 353 YTYPTDILERVLIVRG 368
                     +L+  G
Sbjct: 289 LAGHLQTCR-LLLSYG 303

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  137 bits (348), Expect = 3e-36
 Identities = 63/300 (21%), Positives = 110/300 (36%), Gaps = 65/300 (21%)

Query: 79  NAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPL 135
           +AK   G  PLH A   GH  + E L+          + G        +   +  Q TPL
Sbjct: 85  HAKDKGGLVPLHNACSYGHYEVTELLL----------KHGAC------VNAMDLWQFTPL 128

Query: 136 HEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVA-EILQNCPQSA 192
           HEA     V+V  +L+   ADP      N + ++ + MA      E +  E   +    A
Sbjct: 129 HEAASKNRVEVCSLLLSHGADPT---LVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQA 185

Query: 193 ARQM--------------LEKTNEEQNTPLHEAVR---LRRVDVVKILIK--ADPHVPYS 233
           AR+                 K  +   T LH AV     +R  V ++L++  A+ +    
Sbjct: 186 AREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN---E 242

Query: 234 ANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVA 293
            N++  TPL++A      +++  + ++  +      +   +    T LH A     +   
Sbjct: 243 KNKDFMTPLHVAAERAHNDVMEVLHKHGAK------MNALDSLGQTALHRAALAGHLQTC 296

Query: 294 KILIE--ADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAA 351
           ++L+   +DP +    +    T   M       + V +IL +         D    L  A
Sbjct: 297 RLLLSYGSDPSI---ISLQGFTAAQMGN-----EAVQQILSESTPM--RTSDVDYRLLEA 346

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  108 bits (272), Expect = 4e-26
 Identities = 50/250 (20%), Positives = 91/250 (36%), Gaps = 45/250 (18%)

Query: 146 VVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQN 205
               L         +     + LL  A +    +++A +               ++  ++
Sbjct: 6   SALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVN------CHASDGRKS 59

Query: 206 TPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPE 263
           TPLH A    RV +V++L++  AD H     ++    PL+ A + G  E+   +L++   
Sbjct: 60  TPLHLAAGYNRVRIVQLLLQHGADVHA---KDKGGLVPLHNACSYGHYEVTELLLKHGAC 116

Query: 264 SAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETPLYMAAAN 321
                 +   +  Q TPLHEA     V+V  +L+   ADP      N + ++ + MA   
Sbjct: 117 ------VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT---LVNCHGKSAVDMAPTP 167

Query: 322 GS---------------------VKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDIL 360
                                  +  V K L        +    +TALH AV +      
Sbjct: 168 ELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRK 227

Query: 361 E--RVLIVRG 368
           +   +L+ +G
Sbjct: 228 QVAELLLRKG 237

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 99.1 bits (248), Expect = 8e-23
 Identities = 40/252 (15%), Positives = 78/252 (30%), Gaps = 61/252 (24%)

Query: 78  ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
            N  G S + +A        + +                             + ++ L  
Sbjct: 153 VNCHGKSAVDMAPTPELRERLTYEF---------------------------KGHSLLQA 185

Query: 138 AVRLRSVDVVKILIK-ADPHVSYSANRNSETLLYMAVANGSAEI--VAEILQNCPQSAAR 194
           A       V K L             ++ ET L+ AVA+   +   VAE+L    + A  
Sbjct: 186 AREADLAKVKKTLALEIINFK---QPQSHETALHCAVASLHPKRKQVAELLLR--KGAN- 239

Query: 195 QMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAE 252
             + + N++  TPLH A      DV+++L K  A  +   + +   +T L+ A   G  +
Sbjct: 240 --VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMN---ALDSLGQTALHRAALAGHLQ 294

Query: 253 IVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRN 310
               +L    +          + +  T           +  + ++              +
Sbjct: 295 TCRLLLSYGSD------PSIISLQGFTAAQMG-----NEAVQQILSESTPMRT-----SD 338

Query: 311 SETPLYMAAANG 322
            +  L  A+  G
Sbjct: 339 VDYRLLEASKAG 350

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  141 bits (357), Expect = 8e-39
 Identities = 52/257 (20%), Positives = 92/257 (35%), Gaps = 32/257 (12%)

Query: 77  QANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLH 136
           Q    GDS LHLA      A+   +I         L               N  Q TPLH
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN------------FQNNLQQTPLH 50

Query: 137 EAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAAR 194
            AV     ++ + L+    DP +    +    T L++A   G    V  + Q+C      
Sbjct: 51  LAVITNQPEIAEALLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH 107

Query: 195 QMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAE 252
            +L+ TN   +T LH A     + +V++L+   AD +       N  T L++AV   + +
Sbjct: 108 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ--EPCNGRTALHLAVDLQNPD 165

Query: 253 IVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRN 310
           +V+ +L+   +      + +   +  +P        S  + + L +   +          
Sbjct: 166 LVSLLLKCGAD------VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL---QMLPE 216

Query: 311 SETPLYMAAANGSVKIV 327
           SE        +   +  
Sbjct: 217 SEDEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  126 bits (318), Expect = 2e-33
 Identities = 44/211 (20%), Positives = 84/211 (39%), Gaps = 12/211 (5%)

Query: 162 NRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVK 221
             + ++ L++A+ +    +  E+++      A   L   N  Q TPLH AV   + ++ +
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAF--LNFQNNLQQTPLHLAVITNQPEIAE 62

Query: 222 ILIK--ADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNT 279
            L+    DP +    +    TPL++A   G    V  + Q+C       +L+ TN   +T
Sbjct: 63  ALLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT 119

Query: 280 PLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSP 337
            LH A     + + ++L+   AD +       N  T L++A    +  +V+ +L+     
Sbjct: 120 CLHLASIHGYLGIVELLVSLGADVNAQ--EPCNGRTALHLAVDLQNPDLVSLLLKCGADV 177

Query: 338 AHEGPDGKTALHAAVYTYPTDILERVLIVRG 368
                 G +          T I +  L    
Sbjct: 178 NRVTYQGYSPYQLTWGRPSTRIQQ-QLGQLT 207

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 96.5 bits (241), Expect = 7e-23
 Identities = 45/191 (23%), Positives = 80/191 (41%), Gaps = 38/191 (19%)

Query: 198 EKTNEEQNTPLHEAVR----LRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSA 251
           ++  E+ ++ LH A+        ++V++ +    A  +     N   +TPL++AV     
Sbjct: 2   QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNF---QNNLQQTPLHLAVITNQP 58

Query: 252 EIV-------AEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPH 302
           EI         +              E  +   NTPLH A     +    +L +    PH
Sbjct: 59  EIAEALLGAGCDP-------------ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105

Query: 303 VPY---SANRNSETPLYMAAANGSVKIVAKIL--QKCPSPAHEGPDGKTALHAAVYTYPT 357
           +     + N N  T L++A+ +G + IV ++L        A E  +G+TALH AV     
Sbjct: 106 LHSILKATNYNGHTCLHLASIHGYLGIV-ELLVSLGADVNAQEPCNGRTALHLAVDLQNP 164

Query: 358 DILERVLIVRG 368
           D++  +L+  G
Sbjct: 165 DLVS-LLLKCG 174

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  141 bits (357), Expect = 9e-39
 Identities = 63/258 (24%), Positives = 103/258 (39%), Gaps = 45/258 (17%)

Query: 79  NAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPL 135
             +     SPLH AA+ GH  I   L+          + G        +   +E+Q TPL
Sbjct: 5   KMEHQNKRSPLHAAAEAGHVDICHMLV----------QAGAN------IDTCSEDQRTPL 48

Query: 136 HEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAA 193
            EA     ++ VK LIK  A        +    T L++A   G  E+V + L     S  
Sbjct: 49  MEAAENNHLEAVKYLIKAGALVD---PKDAEGSTCLHLAAKKGHYEVV-QYL----LSNG 100

Query: 194 RQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSA 251
           +  +   ++   TP+  A   + VD+VK+L+   +D ++    +      L+ A  +G  
Sbjct: 101 QMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI---RDNEENICLHWAAFSGCV 157

Query: 252 EIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANR 309
           +I   +L    +      L   N   ++PLH A R    D   + +   +D  +    N+
Sbjct: 158 DIAEILLAAKCD------LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTL---KNK 208

Query: 310 NSETPLYMAAANGSVKIV 327
             ETPL  A+ N  V   
Sbjct: 209 EGETPLQCASLNSQVWSA 226

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  116 bits (293), Expect = 8e-30
 Identities = 48/233 (20%), Positives = 84/233 (36%), Gaps = 50/233 (21%)

Query: 79  NAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPL 135
           +       +PL  AA+  H   V++LI          + G     +      + E +T L
Sbjct: 38  DTCSEDQRTPLMEAAENNHLEAVKYLI----------KAGALVDPK------DAEGSTCL 81

Query: 136 HEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIV-------AEILQNC 188
           H A +    +VV+ L+          +    T +  A      ++V       ++I    
Sbjct: 82  HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI---- 137

Query: 189 PQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILI--KADPHVPYSANRNSETPLYMAV 246
                       + E+N  LH A     VD+ +IL+  K D H   + N + ++PL++A 
Sbjct: 138 ---------NIRDNEENICLHWAAFSGCVDIAEILLAAKCDLH---AVNIHGDSPLHIAA 185

Query: 247 ANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEA 299
                + V   L    +      +   N+E  TPL  A     V  A  + +A
Sbjct: 186 RENRYDCVVLFLSRDSD------VTLKNKEGETPLQCASLNSQVWSALQMSKA 232

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  101 bits (254), Expect = 2e-24
 Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 34/194 (17%)

Query: 79  NAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPL 135
           + K   G + LHLAAKKGH  +V++L+            G       +    +    TP+
Sbjct: 71  DPKDAEGSTCLHLAAKKGHYEVVQYLL----------SNG----QMDVNCQDDGGW-TPM 115

Query: 136 HEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAA 193
             A   + VD+VK+L+   +D ++    +      L+ A  +G  +I   +L        
Sbjct: 116 IWATEYKHVDLVKLLLSKGSDINI---RDNEENICLHWAAFSGCVDIAEILLAAKCD--- 169

Query: 194 RQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSA 251
              L   N   ++PLH A R  R D V + +   +D  +    N+  ETPL  A  N   
Sbjct: 170 ---LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTL---KNKEGETPLQCASLNSQV 223

Query: 252 EIVAEILQNCPESA 265
               ++ +   +SA
Sbjct: 224 WSALQMSKALQDSA 237

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 96.7 bits (242), Expect = 6e-23
 Identities = 37/180 (20%), Positives = 67/180 (37%), Gaps = 26/180 (14%)

Query: 198 EKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIV- 254
           +  ++ + +PLH A     VD+  +L++  A+     + + +  TPL  A  N   E V 
Sbjct: 5   KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID---TCSEDQRTPLMEAAENNHLEAVK 61

Query: 255 ------AEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSAN 308
                 A +             +  + E +T LH A +    +V + L+          +
Sbjct: 62  YLIKAGALV-------------DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQD 108

Query: 309 RNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRG 368
               TP+  A     V +V  +L K         +    LH A ++   DI E +L+   
Sbjct: 109 DGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAE-ILLAAK 167

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  140 bits (355), Expect = 6e-38
 Identities = 42/285 (14%), Positives = 93/285 (32%), Gaps = 44/285 (15%)

Query: 88  LAAKKGHTAIVEFLI--------VFANRQPIDLERGVESAARQILKMTNEEQN------- 132
           + +   H      L+        +   +  +D  +         +++ +           
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDW 60

Query: 133 TPLHEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQ 190
           +P+HEA        ++ LI      +       +  + L+ A   G    V  +L++  Q
Sbjct: 61  SPMHEAAIHGHQLSLRNLISQGWAVN---IITADHVSPLHEACLGGHLSCVKILLKHGAQ 117

Query: 191 SAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVAN 248
                 +     + +TPL  A      D V +L++  A          +  +P++ A   
Sbjct: 118 ------VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ----PESDLASPIHEAARR 167

Query: 249 GSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYS 306
           G  E V  ++           ++       TPL+ A   +     K L+E  AD +    
Sbjct: 168 GHVECVNSLIAYGGN------IDHKISHLGTPLYLACENQQRACVKKLLESGADVN---- 217

Query: 307 ANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAA 351
             +  ++PL+      S ++   ++        +  +GK  +   
Sbjct: 218 QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELV 262

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  136 bits (344), Expect = 2e-36
 Identities = 62/265 (23%), Positives = 99/265 (37%), Gaps = 65/265 (24%)

Query: 79  NAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEA 138
                SP+H AA  GH   +  LI           +G        + +   +  +PLHEA
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLI----------SQGWA------VNIITADHVSPLHEA 99

Query: 139 VRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQM 196
                +  VKIL+K  A  +       +  T L+ A  +GS + V  +L           
Sbjct: 100 CLGGHLSCVKILLKHGAQVNG---VTADWHTPLFNACVSGSWDCV-NLL----------- 144

Query: 197 LEK---TNEEQN--TPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANG 249
           L+       E +  +P+HEA R   V+ V  LI    +         +  TPLY+A  N 
Sbjct: 145 LQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDH---KISHLGTPLYLACENQ 201

Query: 250 SAEIVAEILQNCPESAARQMLEK-----TNEEQNTPLHEAVRLRSVDVAKILIE--ADPH 302
               V + L           LE        + Q++PLH  VR  S ++A +L++  AD  
Sbjct: 202 QRACV-KKL-----------LESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQ 249

Query: 303 VPYSANRNSETPLYMAAANGSVKIV 327
                N   + P+ +      +  +
Sbjct: 250 A---KNAEGKRPVELVPPESPLAQL 271

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 98.7 bits (247), Expect = 3e-23
 Identities = 39/194 (20%), Positives = 62/194 (31%), Gaps = 50/194 (25%)

Query: 78  ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQN--TPL 135
             A   +PL  A   G    V  L+          + G              E +  +P+
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLL----------QHGAS---------VQPESDLASPI 161

Query: 136 HEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAA 193
           HEA R   V+ V  LI    +         +  T LY+A  N     V + L        
Sbjct: 162 HEAARRGHVECVNSLIAYGGNIDH---KISHLGTPLYLACENQQRACV-KKL-------- 209

Query: 194 RQMLEK-----TNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAV 246
              LE        + Q++PLH  VR    ++  +L+   AD       N   + P+ +  
Sbjct: 210 ---LESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQA---KNAEGKRPVELVP 263

Query: 247 ANGSAEIVAEILQN 260
                 +    L+ 
Sbjct: 264 PES--PLAQLFLER 275

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 78.7 bits (195), Expect = 2e-16
 Identities = 31/159 (19%), Positives = 53/159 (33%), Gaps = 31/159 (19%)

Query: 77  QANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLH 136
           Q  +   SP+H AA++GH   V  LI            G     +           TPL+
Sbjct: 152 QPESDLASPIHEAARRGHVECVNSLI----------AYGGNIDHK------ISHLGTPLY 195

Query: 137 EAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAAR 194
            A   +    VK L++  AD +      +  ++ L+  V   S E+   ++         
Sbjct: 196 LACENQQRACVKKLLESGADVN----QGKGQDSPLHAVVRTASEELACLLMDFGAD---- 247

Query: 195 QMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVP 231
              +  N E   P+        +  +  L +  A    P
Sbjct: 248 --TQAKNAEGKRPVELVPPESPLAQL-FLEREGASLPKP 283

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  140 bits (355), Expect = 4e-37
 Identities = 64/343 (18%), Positives = 119/343 (34%), Gaps = 64/343 (18%)

Query: 44  RSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQA---------NAK---GDSPLHLAAK 91
             + ++     E   ++ +  + I     SLL  +         N        P      
Sbjct: 11  MINASVWMPPMENEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYG 70

Query: 92  KGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILI 151
            G+  + +F                             E    LH      S  + + + 
Sbjct: 71  NGNDFLGDFNH----------TNLQIPTEP------EPESPIKLHTEAA-GSYAITEPIT 113

Query: 152 KADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQ--MLEKTNEEQNTPLH 209
           +   ++     R++ T+L+   +N SAE   +++ +  +        +   + ++NTPL 
Sbjct: 114 RESVNI--IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLM 171

Query: 210 EAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
            AV  RR  +V  L+K  ADP      N++  + L+ A AN    ++  +L +       
Sbjct: 172 LAVLARRRRLVAYLMKAGADPT---IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGD- 227

Query: 268 QMLEKTNEEQNTPLHEAVR---LRSVDVAKILIE--ADPHVPYSANRNS-----ETPLYM 317
             +E+ +    T L           V  AK+L+E  A      +A ++S      T L+ 
Sbjct: 228 --IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHY 285

Query: 318 AAANGSVKIVAKILQKCPSPAHEGPD-------GKTALHAAVY 353
           AA   ++ IV K L        +G +       GKT +  A  
Sbjct: 286 AAQVSNMPIV-KYLV-----GEKGSNKDKQDEDGKTPIMLAAQ 322

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  137 bits (346), Expect = 6e-36
 Identities = 61/391 (15%), Positives = 120/391 (30%), Gaps = 89/391 (22%)

Query: 5   LYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFV 64
           L EA+  G I+      R+EL                    +                F+
Sbjct: 41  LLEASYDGYIK----RQRNEL-----QHYSLYPNPQGYGNGND---------------FL 76

Query: 65  EQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQIL 124
                    +  +   +    LH  A  G  AI E +              V        
Sbjct: 77  GDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPIT----------RESVN------- 118

Query: 125 KMTNEEQNTPLHEAVRLRSVDVVKILI--KADPHVSYSANRNS-----ETLLYMAVANGS 177
            +      T LH      S +  + LI  +A   ++  A+ N+      T L +AV    
Sbjct: 119 IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARR 178

Query: 178 AEIV-------AEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHV 230
             +V       A+                 N+ + + LH+A   R   ++  ++      
Sbjct: 179 RRLVAYLMKAGADP-------------TIYNKSERSALHQAAANRDFGMMVYMLN---ST 222

Query: 231 PYSANRNS-----ETPLYMAVANGSAEIV--AEILQNC---PESAARQMLEKTNEEQNTP 280
               +         T L +   N   + V  A++L       +       +    +  T 
Sbjct: 223 KLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA 282

Query: 281 LHEAVRLRSVDVAKILIE---ADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSP 337
           LH A ++ ++ + K L+    ++       + + +TP+ +AA  G +++V  ++Q+  S 
Sbjct: 283 LHYAAQVSNMPIVKYLVGEKGSNKD---KQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV 339

Query: 338 AHEGPDGKTALHAAVYTYPTDILERVLIVRG 368
                   TA   A      +I++ +     
Sbjct: 340 EAVDATDHTARQLAQANNHHNIVD-IFDRCR 369

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  118 bits (298), Expect = 2e-29
 Identities = 49/287 (17%), Positives = 99/287 (34%), Gaps = 62/287 (21%)

Query: 35  NTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAK---GDSPLHLAAK 91
            TVLH     S    +  E  I  E+ E +    D+        NA     ++PL LA  
Sbjct: 126 RTVLHWIASNSSA--EKSEDLIVHEAKECIAAGADV--------NAMDCDENTPLMLAVL 175

Query: 92  KGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILI 151
                +V +L+          + G +          N+ + + LH+A   R   ++  ++
Sbjct: 176 ARRRRLVAYLM----------KAGADPTIY------NKSERSALHQAAANRDFGMMVYML 219

Query: 152 KADPHVSYSANRNS-----ETLLYMAVANGSAEIV--AEIL------QNCPQSAARQMLE 198
                     +         T L +   N   + V  A++L       +   +A +   +
Sbjct: 220 N---STKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARK---D 273

Query: 199 KTNEEQNTPLHEAVRLRRVDVVKILIK---ADPHVPYSANRNSETPLYMAVANGSAEIVA 255
               +  T LH A ++  + +VK L+    ++       + + +TP+ +A   G  E+V 
Sbjct: 274 SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD---KQDEDGKTPIMLAAQEGRIEVVM 330

Query: 256 EILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--AD 300
            ++Q          +E  +   +T    A      ++  I      +
Sbjct: 331 YLIQQGAS------VEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  137 bits (348), Expect = 8e-37
 Identities = 54/304 (17%), Positives = 103/304 (33%), Gaps = 65/304 (21%)

Query: 78  ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
           A+AK      L    G    +E  +           +  +       K+  ++       
Sbjct: 4   ADAKQKRNEQLKRWIGSETDLEPPV----------VKRKK------TKVKFDD-GAVFLA 46

Query: 138 AVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIV-------AEILQNC 188
           A      + V  L++  AD +    AN +  T L+ A  + + ++V       A I    
Sbjct: 47  ACSSGDTEEVLRLLERGADIN---YANVDGLTALHQACIDDNVDMVKFLVENGANI---- 99

Query: 189 PQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAV 246
                     + + E   PLH A     +D+ + LI   A      + N   +TPL +A 
Sbjct: 100 ---------NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG---AVNSEGDTPLDIAE 147

Query: 247 ANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVP 304
                E++ +             + +   +      E  R+   D  + L     +    
Sbjct: 148 EEAMEELL-QNE-----------VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDV-- 193

Query: 305 YSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVL 364
               ++  T L++AAA G  +++  ++Q       +  DG T LHAA +    +    +L
Sbjct: 194 -RHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACR-IL 251

Query: 365 IVRG 368
           +   
Sbjct: 252 VENL 255

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  126 bits (320), Expect = 6e-33
 Identities = 49/264 (18%), Positives = 96/264 (36%), Gaps = 54/264 (20%)

Query: 78  ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERG--VESAARQILKMTNEEQNTPL 135
           AN  G + LH A    +  +V+FL+          E G  +           + E   PL
Sbjct: 69  ANVDGLTALHQACIDDNVDMVKFLV----------ENGANINQP--------DNEGWIPL 110

Query: 136 HEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAA 193
           H A     +D+ + LI   A      + N   +T L +A      E++ +          
Sbjct: 111 HAAASCGYLDIAEYLISQGAHVG---AVNSEGDTPLDIAEEEAMEELL-QNE-------- 158

Query: 194 RQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSA 251
              + +   +      E  R+   D  + L     +        ++  T L++A A G  
Sbjct: 159 ---VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDV---RHAKSGGTALHVAAAKGYT 212

Query: 252 EIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANR 309
           E++  ++Q   +      +   + +  TPLH A      +  +IL+E   D     + N+
Sbjct: 213 EVLKLLIQARYD------VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME---AVNK 263

Query: 310 NSETPLYMAAANGSVKIVAKILQK 333
             +T   +A  +  +  + ++ +K
Sbjct: 264 VGQTAFDVADEDI-LGYLEELQKK 286

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 66.8 bits (164), Expect = 3e-12
 Identities = 23/189 (12%), Positives = 50/189 (26%), Gaps = 62/189 (32%)

Query: 74  LLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNT 133
            + +     ++      +       ++L              +            +   T
Sbjct: 158 EVNRQGVDIEAARKEEERIMLRDARQWLN----------SGHINDVRH------AKSGGT 201

Query: 134 PLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAA 193
            LH A      +V+K+LI          + N                             
Sbjct: 202 ALHVAAAKGYTEVLKLLI------QARYDVN----------------------------- 226

Query: 194 RQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSA 251
                K  +   TPLH A    + +  +IL++   D     + N+  +T   +A  +   
Sbjct: 227 ----IKDYDGW-TPLHAAAHWGKEEACRILVENLCDME---AVNKVGQTAFDVADEDILG 278

Query: 252 EIVAEILQN 260
            +  E+ + 
Sbjct: 279 YLE-ELQKK 286

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  134 bits (340), Expect = 2e-36
 Identities = 52/274 (18%), Positives = 88/274 (32%), Gaps = 63/274 (22%)

Query: 77  QANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLH 136
             +      +  A + G       L+          E G +      ++  ++E  T LH
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCRELV----------EAGYD------VRQPDKENVTLLH 47

Query: 137 EAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIV-------AEILQNCP 189
            A     +D+VK  I     V       + T L+ A   G   +V       A+      
Sbjct: 48  WAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP----- 102

Query: 190 QSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVA 247
                      + E  + +H A +     +V  LI    D       ++N  TPL  A  
Sbjct: 103 --------SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD---MMDQNGMTPLMWAAY 151

Query: 248 NGSAEIVAEIL------QNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--A 299
              +     +L       N                +NT LH AV   +  V  +L+E  A
Sbjct: 152 RTHSVDPTRLLLTFNVSVN----------LGDKYHKNTALHWAVLAGNTTVISLLLEAGA 201

Query: 300 DPHVPYSANRNSETPLYMAAANGSVKIVAKILQK 333
           +     + N   E+ L +A    +V ++   LQ+
Sbjct: 202 NVD---AQNIKGESALDLAKQRKNVWMI-NHLQE 231

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  118 bits (299), Expect = 1e-30
 Identities = 47/226 (20%), Positives = 94/226 (41%), Gaps = 33/226 (14%)

Query: 77  QANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLH 136
           Q + +  + LH AA      +V++ I           +G       + ++  +  +TPLH
Sbjct: 37  QPDKENVTLLHWAAINNRIDLVKYYI----------SKGAI-----VDQLGGDLNSTPLH 81

Query: 137 EAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAAR 194
            A R   + +V  L+K  ADP +    +    + +++A   G   IVA ++         
Sbjct: 82  WATRQGHLSMVVQLMKYGADPSL---IDGEGCSCIHLAAQFGHTSIVAYLIAKGQD---- 134

Query: 195 QMLEKTNEEQNTPLHEAV-RLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEI 253
             ++  ++   TPL  A  R   VD  ++L+  +  V      +  T L+ AV  G+  +
Sbjct: 135 --VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTV 192

Query: 254 VAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEA 299
           ++ +L+          ++  N +  + L  A + ++V +   L EA
Sbjct: 193 ISLLLEAGAN------VDAQNIKGESALDLAKQRKNVWMINHLQEA 232

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 99.4 bits (249), Expect = 7e-24
 Identities = 34/184 (18%), Positives = 71/184 (38%), Gaps = 31/184 (16%)

Query: 197 LEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIV 254
           +   ++     + +A +    +  + L++   D       ++ + T L+ A  N   ++V
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVR---QPDKENVTLLHWAAINNRIDLV 58

Query: 255 -------AEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPY 305
                  A +  +          +   +  +TPLH A R   + +   L++  ADP +  
Sbjct: 59  KYYISKGAIV--D----------QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSL-- 104

Query: 306 SANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALH-AAVYTYPTDILERVL 364
             +    + +++AA  G   IVA ++ K         +G T L  AA  T+  D    +L
Sbjct: 105 -IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTR-LL 162

Query: 365 IVRG 368
           +   
Sbjct: 163 LTFN 166

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  133 bits (336), Expect = 3e-35
 Identities = 42/286 (14%), Positives = 86/286 (30%), Gaps = 63/286 (22%)

Query: 78  ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQN-TPLH 136
           A+  G S  + A    +  +V  L+            G            N  +N  PLH
Sbjct: 27  ADVHGHSASYYAIADNNVRLVCTLL----------NAGAL---------KNLLENEFPLH 67

Query: 137 EAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAAR 194
           +A  L    +VKIL+    D       +    T LY AV +G+ + V   ++        
Sbjct: 68  QAATLEDTKIVKILLFSGLDDSQ---FDDKGNTALYYAVDSGNMQTVKLFVKKNW----- 119

Query: 195 QMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAE 252
           +++        T  + AV L  V +V   +                 + +++ + NG  +
Sbjct: 120 RLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF----DLAILLSCIHITIKNGHVD 175

Query: 253 IV-------AEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPY 305
           ++            N             +      +  A+  + +++ + L + D     
Sbjct: 176 MMILLLDYMTST--N----------TNNSLLFIPDIKLAIDNKDIEMLQALFKYD----- 218

Query: 306 SANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAA 351
             N    +           +I   I++K      +       +   
Sbjct: 219 -INIY--SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKN 261

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  122 bits (308), Expect = 2e-31
 Identities = 48/264 (18%), Positives = 94/264 (35%), Gaps = 64/264 (24%)

Query: 79  NAK-GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
           N    + PLH AA    T IV+ L+            G++          +++ NT L+ 
Sbjct: 58  NLLENEFPLHQAATLEDTKIVKILL----------FSGLD------DSQFDDKGNTALYY 101

Query: 138 AVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQML 197
           AV   ++  VK+ +K +  + +      +T  Y AV      IV+  L   P +      
Sbjct: 102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST------ 155

Query: 198 EKTNEEQNTPLHEAVRLRRVDVVKILI--KADPHVPYSANRNSETP-LYMAVANGSAEIV 254
                   + +H  ++   VD++ +L+      +   + N     P + +A+ N   E++
Sbjct: 156 FDLAILL-SCIHITIKNGHVDMMILLLDYMTSTN---TNNSLLFIPDIKLAIDNKDIEML 211

Query: 255 -------AEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPY 305
                    I                     +   E V L   ++AK++IE   +     
Sbjct: 212 QALFKYDINI--------------------YSANLENVLLDDAEIAKMIIEKHVEYK--- 248

Query: 306 SANRNSETPLYMAAANGSVKIVAK 329
             + +    L +   N   +I++K
Sbjct: 249 --SDSYTKDLDIVKNNKLDEIISK 270

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  104 bits (261), Expect = 4e-25
 Identities = 32/199 (16%), Positives = 76/199 (38%), Gaps = 22/199 (11%)

Query: 172 AVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPH 229
            +    ++ +   L +           K +   ++  + A+    V +V  L+   A  +
Sbjct: 6   RINTWKSKQLKSFLSSKD-------TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKN 58

Query: 230 VPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRS 289
           +       +E PL+ A      +IV  +L +  +        + +++ NT L+ AV   +
Sbjct: 59  L-----LENEFPLHQAATLEDTKIVKILLFSGLD------DSQFDDKGNTALYYAVDSGN 107

Query: 290 VDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALH 349
           +   K+ ++ +  + +      +T  Y A     V IV+  L + PS   +     + +H
Sbjct: 108 MQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF-DLAILLSCIH 166

Query: 350 AAVYTYPTDILERVLIVRG 368
             +     D++  +L+   
Sbjct: 167 ITIKNGHVDMMI-LLLDYM 184

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 62.5 bits (153), Expect = 5e-11
 Identities = 18/148 (12%), Positives = 47/148 (31%), Gaps = 29/148 (19%)

Query: 78  ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
             A   S +H+  K GH  ++  L+          +              +      +  
Sbjct: 157 DLAILLSCIHITIKNGHVDMMILLL----------DYMT-----STNTNNSLLFIPDIKL 201

Query: 138 AVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQML 197
           A+  + +++++ L K D       N    +     V    AEI   I++   +       
Sbjct: 202 AIDNKDIEMLQALFKYD------INIY--SANLENVLLDDAEIAKMIIEKHVE------Y 247

Query: 198 EKTNEEQNTPLHEAVRLRRVDVVKILIK 225
           +  +  ++  + +  +L  +      ++
Sbjct: 248 KSDSYTKDLDIVKNNKLDEIISKNKELR 275

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  130 bits (329), Expect = 5e-35
 Identities = 47/253 (18%), Positives = 98/253 (38%), Gaps = 39/253 (15%)

Query: 82  GDSPLHLAAKKGHTAIV-EFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVR 140
            + PLH A  +     V E L            +         L   +++   PLH +V 
Sbjct: 2   SNYPLHQACMENEFFKVQELLH----------SKPSL------LLQKDQDGRIPLHWSVS 45

Query: 141 LRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLE 198
            ++ ++   L+    + ++    + +  T  ++A + G+ E+V + L + P       L 
Sbjct: 46  FQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVV-KSLYDRPLKPD---LN 101

Query: 199 KTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIVAE 256
           K   +  T LH AV  +  +V + LI+  A        ++ ++ PL+ A + GS +++  
Sbjct: 102 KITNQGVTCLHLAVGKKWFEVSQFLIENGASVR---IKDKFNQIPLHRAASVGSLKLIEL 158

Query: 257 ILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE---ADPHVPYSANRNSET 313
           +        +   +   +++  TPL  A+     D A +L+E   A+  +    +     
Sbjct: 159 LCGL---GKSA--VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL---VDNKGAK 210

Query: 314 PLYMAAANGSVKI 326
              +A      K 
Sbjct: 211 AEDVALNEQVKKF 223

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  116 bits (294), Expect = 4e-30
 Identities = 44/238 (18%), Positives = 82/238 (34%), Gaps = 39/238 (16%)

Query: 132 NTPLHEAVRLRSVD-VVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNC 188
           N PLH+A        V ++L    +        +++    L+ +V+  + EI + +L   
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLL---QKDQDGRIPLHWSVSFQAHEITSFLLSK- 58

Query: 189 PQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILI----KADPHVPYSANRNSETPLYM 244
                  + +  ++   TP H A  +  ++VVK L     K D +          T L++
Sbjct: 59  --MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN---KITNQGVTCLHL 113

Query: 245 AVANGSAEIV-------AEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILI 297
           AV     E+        A +                ++    PLH A  + S+ + ++L 
Sbjct: 114 AVGKKWFEVSQFLIENGASV-------------RIKDKFNQIPLHRAASVGSLKLIELLC 160

Query: 298 EADPHVPYSANRNSETPLYMAAANGSVKIVAKIL--QKCPSPAHEGPDGKTALHAAVY 353
                     ++   TPL+ A A G       +L  +           G  A   A+ 
Sbjct: 161 GLGKSAVNWQDKQGWTPLFHALAEGHGDAA-VLLVEKYGAEYDLVDNKGAKAEDVALN 217

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  112 bits (282), Expect = 2e-28
 Identities = 41/246 (16%), Positives = 75/246 (30%), Gaps = 68/246 (27%)

Query: 79  NAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPL 135
             K   G  PLH +       I  FL+           +        +    ++   TP 
Sbjct: 30  LQKDQDGRIPLHWSVSFQAHEITSFLL----------SKM---ENVNLDDYPDDSGWTPF 76

Query: 136 HEAVRLRSVDVVKILI----KADPHVSYSANRNSETLLYMAVANGSAEIV-------AEI 184
           H A  + +++VVK L     K D +          T L++AV     E+        A +
Sbjct: 77  HIACSVGNLEVVKSLYDRPLKPDLN---KITNQGVTCLHLAVGKKWFEVSQFLIENGASV 133

Query: 185 LQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYM 244
                           ++    PLH A  +  + ++++L           ++   TPL+ 
Sbjct: 134 -------------RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH 180

Query: 245 AVANGSAEIVAEIL-------QNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILI 297
           A+A G  +    +L        +             N+        A+      V K  +
Sbjct: 181 ALAEGHGDAA-VLLVEKYGAEYD----------LVDNKGA-KAEDVALNE---QVKKFFL 225

Query: 298 EADPHV 303
               +V
Sbjct: 226 N---NV 228

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 76.3 bits (189), Expect = 6e-16
 Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 10/134 (7%)

Query: 239 ETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE 298
             PL+ A        V E+L + P       L + +++   PLH +V  ++ ++   L+ 
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSL-----LLQKDQDGRIPLHWSVSFQAHEITSFLLS 57

Query: 299 --ADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPD--GKTALHAAVYT 354
              + ++    + +  TP ++A + G++++V  +  +   P        G T LH AV  
Sbjct: 58  KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK 117

Query: 355 YPTDILERVLIVRG 368
              ++ +  LI  G
Sbjct: 118 KWFEVSQ-FLIENG 130

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  130 bits (330), Expect = 9e-35
 Identities = 58/285 (20%), Positives = 106/285 (37%), Gaps = 78/285 (27%)

Query: 79  NAK---GDSPLHLAA-------------KKGHTAIVEFLIVFANRQPIDLERGVESAARQ 122
           N +   G +PL +A+             ++   A++   I           +G       
Sbjct: 4   NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFI----------YQGAS----- 48

Query: 123 ILKMTNEEQNTPLHEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEI 180
           +   T+    T LH A R    D  K L++  AD +     +    T L+ AV+  +  +
Sbjct: 49  LHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN---IQDNMGRTPLHAAVSADAQGV 105

Query: 181 VAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNS 238
              +++N     A  +  + ++   TPL  A RL    +++ LI   AD +   + +   
Sbjct: 106 FQILIRN----RATDLDARMHDGT-TPLILAARLAVEGMLEDLINSHADVN---AVDDLG 157

Query: 239 ETPLYMAVANGSAEIV-------AEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVD 291
           ++ L+ A A  + +         A    +           + N E+ TPL  A R  S +
Sbjct: 158 KSALHWAAAVNNVDAAVVLLKNGANK--D----------MQNNREE-TPLFLAAREGSYE 204

Query: 292 VAKILIEADPHVPYSANRNS-----ETPLYMAAANGSVKIVAKIL 331
            AK+L++        ANR+        P  +A       IV ++L
Sbjct: 205 TAKVLLDHF------ANRDITDHMDRLPRDIAQERMHHDIV-RLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 82.5 bits (205), Expect = 7e-18
 Identities = 39/191 (20%), Positives = 61/191 (31%), Gaps = 34/191 (17%)

Query: 198 EKTNEEQNTPLHEAVR-------------LRRVDVVKILIKADPHVPYSANRNSETPLYM 244
                +  TPL  A                    V+   I     +    +R  ET L++
Sbjct: 4   NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHL 63

Query: 245 AVANGSAEIV-------AEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILI 297
           A     ++         A+   N           + N  + TPLH AV   +  V +ILI
Sbjct: 64  AARYSRSDAAKRLLEASADA--N----------IQDNMGR-TPLHAAVSADAQGVFQILI 110

Query: 298 EADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPT 357
                   +   +  TPL +AA      ++  ++            GK+ALH A      
Sbjct: 111 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV 170

Query: 358 DILERVLIVRG 368
           D    VL+  G
Sbjct: 171 DAAV-VLLKNG 180

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 82.1 bits (204), Expect = 9e-18
 Identities = 34/165 (20%), Positives = 57/165 (34%), Gaps = 46/165 (27%)

Query: 79  NAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPL 135
           +A+   G +PL LAA+     ++E LI              +      +   ++   + L
Sbjct: 118 DARMHDGTTPLILAARLAVEGMLEDLI----------NSHAD------VNAVDDLGKSAL 161

Query: 136 HEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIV-------AEILQ 186
           H A  + +VD   +L+K  A+       N   ET L++A   GS E         A    
Sbjct: 162 HWAAAVNNVDAAVVLLKNGANKD---MQNNREETPLFLAAREGSYETAKVLLDHFANR-- 216

Query: 187 NCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPH 229
                      + T+     P   A      D+V++L       H
Sbjct: 217 -----------DITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  127 bits (323), Expect = 3e-34
 Identities = 52/269 (19%), Positives = 96/269 (35%), Gaps = 60/269 (22%)

Query: 93  GHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIK 152
              A++   I           +G       +   T+    T LH A R    D  K L++
Sbjct: 2   DAPAVISDFI----------YQGAS-----LHNQTDRTGETALHLAARYSRSDAAKRLLE 46

Query: 153 --ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHE 210
             AD +     +    T L+ AV+  +  +   +++N     A  +  + ++   TPL  
Sbjct: 47  ASADAN---IQDNMGRTPLHAAVSADAQGVFQILIRN----RATDLDARMHDGT-TPLIL 98

Query: 211 AVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIVAEIL------QNCP 262
           A RL    +++ LI   AD +     +   ++ L+ A A  + +    +L      ++  
Sbjct: 99  AARLAVEGMLEDLINSHADVNA---VDDLGKSALHWAAAVNNVDAA-VVLLKNGANKD-- 152

Query: 263 ESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETPLYMAAA 320
                    + N E+ TPL  A R  S + AK+L++  A+       +     P  +A  
Sbjct: 153 --------MQNNREE-TPLFLAAREGSYETAKVLLDHFANRD---ITDHMDRLPRDIAQE 200

Query: 321 NGSVKIVAKILQKCPSPAHEGPDGKTALH 349
                IV  + +               LH
Sbjct: 201 RMHHDIVRLLDEY-------NLVRSPQLH 222

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 45.5 bits (109), Expect = 2e-05
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 1/80 (1%)

Query: 289 SVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTAL 348
           +  V    I     +    +R  ET L++AA         ++L+       +   G+T L
Sbjct: 3   APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPL 62

Query: 349 HAAVYTYPTDILERVLIVRG 368
           HAAV      + + +LI   
Sbjct: 63  HAAVSADAQGVFQ-ILIRNR 81

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  123 bits (312), Expect = 2e-32
 Identities = 45/293 (15%), Positives = 78/293 (26%), Gaps = 81/293 (27%)

Query: 77  QANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLH 136
           +   +G     +  K GH+                     +            E  TP  
Sbjct: 10  RTAGEGAMEYLIEWKDGHSPSWVPSS----------YIAAD---------VVSEYETPWW 50

Query: 137 EAVRLRSVDVVKILIK-ADPHVSYSANRNSETLLYMAVANGSAEIV-------AEILQNC 188
            A R      +  L++  D     + + N  T L      GS + V       A++  + 
Sbjct: 51  TAARKADEQALSQLLEDRDVD---AVDENGRTALLFVAGLGSDKCVRLLAEAGADL--D- 104

Query: 189 PQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAV 246
                     +      T LH A    R +VV+ L++  AD  V    +    T L +A 
Sbjct: 105 ---------HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV---EDERGLTALELAR 152

Query: 247 ANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYS 306
                      +Q       R        E+   + E       +V +I+ +        
Sbjct: 153 EILKTTPKGNPMQF----GRRI-----GLEKVINVLEGQVFEYAEVDEIVEKRG------ 197

Query: 307 ANRNSETPLYMAAANGSVKIV-------AKILQKCPSPAHEGPDGKTALHAAV 352
                +   Y+                 A+ + K         D +  L  AV
Sbjct: 198 ---KGKDVEYLVRWKDGGDCEWVKGVHVAEDVAK---------DYEDGLEYAV 238

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  109 bits (274), Expect = 3e-27
 Identities = 39/257 (15%), Positives = 77/257 (29%), Gaps = 66/257 (25%)

Query: 79  NAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEA 138
            ++ ++P   AA+K     +  L+   +         V++         +E   T L   
Sbjct: 42  VSEYETPWWTAARKADEQALSQLLEDRD---------VDAV--------DENGRTALLFV 84

Query: 139 VRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIV-------AEILQNCPQS 191
             L S   V++L +A   + +   R   T L+MA      E+V       A+I       
Sbjct: 85  AGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI------- 137

Query: 192 AARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSE--TPLYMAVANG 249
                 E  +E   T L  A  + +       ++      +      E    +       
Sbjct: 138 ------EVEDERGLTALELAREILKTTPKGNPMQ------FGRRIGLEKVINVLEGQVFE 185

Query: 250 SAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSA 307
            AE+              +++EK  + +    +        D   +     A+       
Sbjct: 186 YAEVD-------------EIVEKRGKGK-DVEYLVRWKDGGDCEWVKGVHVAEDVA---- 227

Query: 308 NRNSETPLYMAAANGSV 324
            ++ E  L  A A   +
Sbjct: 228 -KDYEDGLEYAVAESVI 243

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 98.4 bits (246), Expect = 2e-23
 Identities = 38/258 (14%), Positives = 71/258 (27%), Gaps = 48/258 (18%)

Query: 120 ARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAE 179
            + I   T  E         +                V        ET  + A      +
Sbjct: 4   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQ 59

Query: 180 IVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSE 239
            ++++L++         ++  +E   T L     L     V++L +A   + +   R   
Sbjct: 60  ALSQLLEDRD-------VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGL 112

Query: 240 TPLYMAVANGSAEIV-------AEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDV 292
           T L+MA      E+V       A+I             E  +E   T L  A  +     
Sbjct: 113 TALHMAAGYVRPEVVEALVELGADI-------------EVEDERGLTALELAREILKTTP 159

Query: 293 AKILIEADPHVPYSANRNSE--TPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHA 350
               ++      +      E    +         + V +I++K          GK   + 
Sbjct: 160 KGNPMQ------FGRRIGLEKVINVLEGQVFEYAE-VDEIVEK-------RGKGKDVEYL 205

Query: 351 AVYTYPTDILERVLIVRG 368
             +    D    V  V  
Sbjct: 206 VRWKDGGDCEW-VKGVHV 222

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  116 bits (292), Expect = 2e-29
 Identities = 55/306 (17%), Positives = 94/306 (30%), Gaps = 78/306 (25%)

Query: 79  NAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEA 138
                  +  A  + +   +E L+ F  R     +R  +S  +       E   T L +A
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRS---KKRLTDSEFKD-----PETGKTCLLKA 61

Query: 139 V---RLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQ 195
           +        D + +L+        +   +S      A    S                  
Sbjct: 62  MLNLHNGQNDTIALLL------DVARKTDSLKQFVNASYTDS------------------ 97

Query: 196 MLEKTNEEQNTPLHEAVRLRRVDVVKILIK--AD-----------PHVPYSANRNSETPL 242
                  +  T LH A+  R + +V +L++  AD                      E PL
Sbjct: 98  -----YYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPL 152

Query: 243 YMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEA--- 299
            +A       IV  +LQN  + A    +   +   NT LH  V +    V          
Sbjct: 153 SLAACTNQLAIVKFLLQNSWQPA---DISARDSVGNTVLHALVEVADNTVDNTKFVTSMY 209

Query: 300 DPHVPYSANRNSE------------TPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTA 347
           +  +   A  +              TPL +AA++G + ++A ILQ+              
Sbjct: 210 NEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR-------EIHEPEC 262

Query: 348 LHAAVY 353
            HAA +
Sbjct: 263 RHAAAH 268

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 92.2 bits (229), Expect = 5e-21
 Identities = 40/276 (14%), Positives = 91/276 (32%), Gaps = 53/276 (19%)

Query: 5   LYEAAAKGDIEPFREIAR--DELESIVTDVMK------NTVLHVNIMRSHLTLQTEEGEI 56
           +++A A+ + +    +       +  +TD          T L   ++  H   Q +   +
Sbjct: 17  IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLH-NGQNDTIAL 75

Query: 57  SSESTEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERG- 115
             +     + +     +    +  KG + LH+A ++ +  +V  L+          E G 
Sbjct: 76  LLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV----------ENGA 125

Query: 116 -VESAARQILKMTNEEQN------TPLHEAVRLRSVDVVKILI-----KADPHVSYSANR 163
            V++AA        + +        PL  A     + +VK L+      AD     + + 
Sbjct: 126 DVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADIS---ARDS 182

Query: 164 NSETLLYMAVANGSAEIVAEILQNCPQS----------AARQMLEKTNEEQNTPLHEAVR 213
              T+L+  V      +          +             ++ E TN +  TPL  A  
Sbjct: 183 VGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAAS 242

Query: 214 LRRVDVVKILIKADPHVPYSANRNSETPLYMAVANG 249
             ++ V+  +++ +         +     + A  + 
Sbjct: 243 SGKIGVLAYILQRE--------IHEPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 77.1 bits (190), Expect = 7e-16
 Identities = 36/192 (18%), Positives = 64/192 (33%), Gaps = 31/192 (16%)

Query: 192 AARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK-ADPHVPYSANRNS------ETPLYM 244
           +     +         + +AV       ++ L+           +         +T L  
Sbjct: 1   SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLK 60

Query: 245 AVAN---GSAEIVAEILQNCPESAARQML-----EKTNEEQNTPLHEAVRLRSVDVAKIL 296
           A+ N   G  + +A +L    ++ + +         +  +  T LH A+  R++ +  +L
Sbjct: 61  AMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLL 120

Query: 297 IE--AD-----------PHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAH---E 340
           +E  AD                      E PL +AA    + IV  +LQ    PA     
Sbjct: 121 VENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISAR 180

Query: 341 GPDGKTALHAAV 352
              G T LHA V
Sbjct: 181 DSVGNTVLHALV 192

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 65.6 bits (160), Expect = 4e-12
 Identities = 24/166 (14%), Positives = 47/166 (28%), Gaps = 30/166 (18%)

Query: 235 NRNSETPLYMAVANGSAEIVAEILQNCPESAAR--QMLEKTNEEQNTPLHEAV---RLRS 289
                  ++ AVA  + + +  +L     S  R      K  E   T L +A+       
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQ 69

Query: 290 VDVAKILIEADPHV----------PYSANRNSETPLYMAAANGSVKIV-------AKILQ 332
            D   +L++                  +    +T L++A    ++ +V       A +  
Sbjct: 70  NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA 129

Query: 333 KC-------PSPAHEGPDGKTALHAAVYTYPTDILERVLIVRGTFK 371
                             G+  L  A  T    I+ + L+      
Sbjct: 130 AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV-KFLLQNSWQP 174

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  112 bits (283), Expect = 1e-28
 Identities = 34/249 (13%), Positives = 71/249 (28%), Gaps = 41/249 (16%)

Query: 77  QANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLH 136
           +    G   +  A         + L +    +  D+                +  +T   
Sbjct: 7   KPVKPGQVKVFRALYTFEPRTPDELYI----EEGDII------------YITDMSDTNWW 50

Query: 137 EAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQM 196
           +        ++     A+         + +  L+ A   G+   + E L N         
Sbjct: 51  KGTSKGRTGLIPSNYVAE------QAESIDNPLHEAAKRGNLSWLRECLDNRVG------ 98

Query: 197 LEKTNEEQNTPLHEAVRLRRVDVVKILIK---ADPHVPYSANRNSETPLYMAVANGSAEI 253
           +   ++  +T L+ A      D+V++L      + +     N+  +T L+ A   G A+I
Sbjct: 99  VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ---QNKLGDTALHAAAWKGYADI 155

Query: 254 VAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSET 313
           V  +L            +  N E+      A       + K     D  V   +N     
Sbjct: 156 VQLLLAKGAR------TDLRNIEKKLAFDMATNAACASLLKKKQGTDA-VRTLSNAEDYL 208

Query: 314 PLYMAAANG 322
               +    
Sbjct: 209 DDEDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  100 bits (252), Expect = 2e-24
 Identities = 31/205 (15%), Positives = 66/205 (32%), Gaps = 24/205 (11%)

Query: 160 SANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDV 219
              +  +  ++ A+         E+            +    +  +T   +     R  +
Sbjct: 7   KPVKPGQVKVFRALYTFEPRTPDELYIEEGD------IIYITDMSDTNWWKGTSKGRTGL 60

Query: 220 VKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNT 279
           +     A+         + + PL+ A   G+   + E L N         +   ++  +T
Sbjct: 61  IPSNYVAE------QAESIDNPLHEAAKRGNLSWLRECLDNRVG------VNGLDKAGST 108

Query: 280 PLHEAVRLRSVDVAKILIE---ADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPS 336
            L+ A      D+ ++L      + +     N+  +T L+ AA  G   IV  +L K   
Sbjct: 109 ALYWACHGGHKDIVEMLFTQPNIELNQ---QNKLGDTALHAAAWKGYADIVQLLLAKGAR 165

Query: 337 PAHEGPDGKTALHAAVYTYPTDILE 361
                 + K A   A       +L+
Sbjct: 166 TDLRNIEKKLAFDMATNAACASLLK 190

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 87.3 bits (217), Expect = 9e-20
 Identities = 31/181 (17%), Positives = 60/181 (33%), Gaps = 31/181 (17%)

Query: 197 LEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAE 256
             K  +     +  A+          L   +  + Y     S+T  +   + G   ++  
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIY-ITDMSDTNWWKGTSKGRTGLIPS 63

Query: 257 ILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETP 314
                          +  E  + PLHEA +  ++   +  ++     +     ++   T 
Sbjct: 64  NYVA-----------EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG---LDKAGSTA 109

Query: 315 LYMAAANGSVKIVAKILQKCPSPAHEGPD-------GKTALHAAVYTYPTDILERVLIVR 367
           LY A   G   IV  +            +       G TALHAA +    DI++ +L+ +
Sbjct: 110 LYWACHGGHKDIVEMLF------TQPNIELNQQNKLGDTALHAAAWKGYADIVQ-LLLAK 162

Query: 368 G 368
           G
Sbjct: 163 G 163

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 79.2 bits (196), Expect = 5e-17
 Identities = 41/228 (17%), Positives = 76/228 (33%), Gaps = 47/228 (20%)

Query: 5   LYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTL--------QTEEGE- 55
           ++ A    +     E+  +E + I    M +T       +    L        Q E  + 
Sbjct: 16  VFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDN 75

Query: 56  ---ISSE--STEFVEQILDLCPSLLFQANAK---GDSPLHLAAKKGHTAIVEFLIVFANR 107
               +++  +  ++ + LD    +    N     G + L+ A   GH  IVE L      
Sbjct: 76  PLHEAAKRGNLSWLRECLDNRVGV----NGLDKAGSTALYWACHGGHKDIVEMLF----- 126

Query: 108 QPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIK--ADPHVSYSANRNS 165
                +  +E      L   N+  +T LH A      D+V++L+   A   +    N   
Sbjct: 127 ----TQPNIE------LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDL---RNIEK 173

Query: 166 ETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVR 213
           +    MA     A ++ +  Q     A R     +N E      ++  
Sbjct: 174 KLAFDMATNAACASLL-KKKQG--TDAVR---TLSNAEDYLDDEDSDL 215

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 21/110 (19%), Positives = 33/110 (30%), Gaps = 24/110 (21%)

Query: 74  LLFQANA-------KGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKM 126
           L  Q N         GD+ LH AA KG+  IV+ L+           +G          +
Sbjct: 125 LFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL----------AKGAR------TDL 168

Query: 127 TNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANG 176
            N E+      A       ++K     D   +  +N         +    
Sbjct: 169 RNIEKKLAFDMATNAACASLLKKKQGTDAVRT-LSNAEDYLDDEDSDLEH 217

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  112 bits (283), Expect = 1e-28
 Identities = 44/235 (18%), Positives = 85/235 (36%), Gaps = 37/235 (15%)

Query: 82  GDSPLHLAAKKGHT-AIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVR 140
            +SPL LAAK+    A+ + L             G E   R           T LH A  
Sbjct: 3   WESPLLLAAKENDVQALSKLLK----------FEGCEVHQR------GAMGETALHIAAL 46

Query: 141 LRSVDVVKILIKADPHVSY----SANRNSETLLYMAVANGSAEIV-------AEILQNCP 189
             +++   +L++A P + +    S     +T L++AV N +  +V       A +     
Sbjct: 47  YDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARAT 106

Query: 190 QSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVA 247
            S               PL  A  +   ++V++LI+  AD     + +    T L++ + 
Sbjct: 107 GSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR---AQDSLGNTVLHILIL 163

Query: 248 NGSAEIVAEI----LQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE 298
             +     ++    L        + +    N +  TP   A    ++ + + L++
Sbjct: 164 QPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  104 bits (263), Expect = 7e-26
 Identities = 36/227 (15%), Positives = 74/227 (32%), Gaps = 34/227 (14%)

Query: 166 ETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK 225
           E+ L +A      + ++++L+   +      + +      T LH A     ++   +L++
Sbjct: 4   ESPLLLAAKENDVQALSKLLKF--EGCE---VHQRGAMGETALHIAALYDNLEAAMVLME 58

Query: 226 ADPHVPY----SANRNSETPLYMAVANGSAEIV-------AEILQNCPESAARQMLEKTN 274
           A P + +    S     +T L++AV N +  +V       A +      S          
Sbjct: 59  AAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLI 118

Query: 275 EEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETPLYMAAANGSVKIV----- 327
                PL  A  + S ++ ++LIE  AD     + +    T L++     +         
Sbjct: 119 YYGEHPLSFAACVGSEEIVRLLIEHGADIR---AQDSLGNTVLHILILQPNKTFACQMYN 175

Query: 328 ------AKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRG 368
                      K          G T    A       + +  L+ + 
Sbjct: 176 LLLSYDGGDHLKSLELVPNN-QGLTPFKLAGVEGNIVMFQ-HLMQKR 220

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 86.5 bits (215), Expect = 2e-19
 Identities = 39/237 (16%), Positives = 81/237 (34%), Gaps = 43/237 (18%)

Query: 5   LYEAAAKGDIEPFREI---------ARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGE 55
           L  AA + D++   ++          R          M  T LH+  +  +L        
Sbjct: 7   LLLAAKENDVQALSKLLKFEGCEVHQRGA--------MGETALHIAALYDNL-------- 50

Query: 56  ISSESTEF-VEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVF-ANRQPIDLE 113
              E+    +E   +L    +     +G + LH+A    +  +V  L+   A+   +   
Sbjct: 51  ---EAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGAS---VS-A 103

Query: 114 RGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYM 171
           R   S               PL  A  + S ++V++LI+  AD     + +    T+L++
Sbjct: 104 RATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR---AQDSLGNTVLHI 160

Query: 172 AVANGSAEIVAEI----LQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILI 224
            +   +     ++    L        + +    N +  TP   A     + + + L+
Sbjct: 161 LILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLM 217

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  110 bits (278), Expect = 4e-28
 Identities = 49/232 (21%), Positives = 85/232 (36%), Gaps = 43/232 (18%)

Query: 79  NAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEA 138
             +  + L  A ++    + E L           +   +          + E NTPL+ A
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQ----------DTTYQVDEV------DTEGNTPLNIA 46

Query: 139 VRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQM 196
           V    +++ K LI   AD +     N  S++    A A G  EI+A +L++    A    
Sbjct: 47  VHNNDIEIAKALIDRGADIN---LQNSISDSPYLYAGAQGRTEILAYMLKH----ATPD- 98

Query: 197 LEKTNEEQNTPLHEAVRLRRVDVVKILI---KADPHVPYSANRNSETPLYMAVA-----N 248
           L K N      L  A     +D VK+L+   + D       N    T L  AV       
Sbjct: 99  LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF---QNDFGYTALIEAVGLREGNQ 155

Query: 249 GSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEAD 300
              +IV  +++N  +          +    T +  A +    +++KIL + +
Sbjct: 156 LYQDIVKLLMENGAD------QSIKDNSGRTAMDYANQKGYTEISKILAQYN 201

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  107 bits (270), Expect = 4e-27
 Identities = 49/230 (21%), Positives = 73/230 (31%), Gaps = 57/230 (24%)

Query: 126 MTNEEQNTPLHEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIV-- 181
           M   E    L  A +  +  V +IL             +    T L +AV N   EI   
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQVD---EVDTEGNTPLNIAVHNNDIEIAKA 57

Query: 182 -----AEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANR 236
                A+I                N   ++P   A    R +++  ++K         NR
Sbjct: 58  LIDRGADI-------------NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNR 104

Query: 237 NSETPLYMAVANGSAEIV--------AEILQNCPESAARQMLEKTNEEQNTPLHEAVRLR 288
                L  A   G  + V         +I             +  N+   T L EAV LR
Sbjct: 105 YGGNALIPAAEKGHIDNVKLLLEDGREDI-------------DFQNDFGYTALIEAVGLR 151

Query: 289 S-----VDVAKILIE--ADPHVPYSANRNSETPLYMAAANGSVKIVAKIL 331
                  D+ K+L+E  AD       + +  T +  A   G  +I  KIL
Sbjct: 152 EGNQLYQDIVKLLMENGADQS---IKDNSGRTAMDYANQKGYTEIS-KIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 99.8 bits (250), Expect = 2e-24
 Identities = 50/202 (24%), Positives = 80/202 (39%), Gaps = 27/202 (13%)

Query: 162 NRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVK 221
                 LL  A    + ++  EILQ+      +  +++ + E NTPL+ AV    +++ K
Sbjct: 3   TYEVGALLEAANQRDTKKVK-EILQDT---TYQ--VDEVDTEGNTPLNIAVHNNDIEIAK 56

Query: 222 ILIK--ADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNT 279
            LI   AD +     N  S++P   A A G  EI+A +L++    A    L K N     
Sbjct: 57  ALIDRGADIN---LQNSISDSPYLYAGAQGRTEILAYMLKH----ATPD-LNKHNRYGGN 108

Query: 280 PLHEAVRLRSVDVAKILIE---ADPHVPYSANRNSETPLYMAAA-----NGSVKIVAKIL 331
            L  A     +D  K+L+E    D       N    T L  A            IV  ++
Sbjct: 109 ALIPAAEKGHIDNVKLLLEDGREDIDF---QNDFGYTALIEAVGLREGNQLYQDIVKLLM 165

Query: 332 QKCPSPAHEGPDGKTALHAAVY 353
           +     + +   G+TA+  A  
Sbjct: 166 ENGADQSIKDNSGRTAMDYANQ 187

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 52.5 bits (127), Expect = 5e-08
 Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 20/104 (19%)

Query: 274 NEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETPLYMAAANGSVKIV---- 327
             E    L  A +  +  V +IL +           +    TPL +A  N  ++I     
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVD---EVDTEGNTPLNIAVHNNDIEIAKALI 59

Query: 328 ---AKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRG 368
              A I  +            +    A     T+IL   ++   
Sbjct: 60  DRGADINLQ-------NSISDSPYLYAGAQGRTEILA-YMLKHA 95

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  105 bits (264), Expect = 1e-26
 Identities = 41/181 (22%), Positives = 72/181 (39%), Gaps = 33/181 (18%)

Query: 82  GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
               +H  A +G    +   I          E+         +  T+EE  TPL  A   
Sbjct: 3   NSLSVHQLAAQGEMLYLATRI----------EQENV------INHTDEEGFTPLMWAAAH 46

Query: 142 RSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEK 199
             + VV+ L++  ADP +     +  E+ L +A + G  +IV  +L           + +
Sbjct: 47  GQIAVVEFLLQNGADPQL---LGKGRESALSLACSKGYTDIVKMLLDCGVD------VNE 97

Query: 200 TNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIVAEI 257
            +    TPL  AV    V  VK+L++  ADP +      +    + +AVA G   +  ++
Sbjct: 98  YDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI---ETDSGYNSMDLAVALGYRSVQ-QV 153

Query: 258 L 258
           +
Sbjct: 154 I 154

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 98.2 bits (246), Expect = 3e-24
 Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 23/172 (13%)

Query: 164 NSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKIL 223
            +   ++   A G    +A  ++          +  T+EE  TPL  A    ++ VV+ L
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENV------INHTDEEGFTPLMWAAAHGQIAVVEFL 55

Query: 224 IK--ADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPL 281
           ++  ADP +     +  E+ L +A + G  +IV  +L    +      + + +    TPL
Sbjct: 56  LQNGADPQL---LGKGRESALSLACSKGYTDIVKMLLDCGVD------VNEYDWNGGTPL 106

Query: 282 HEAVRLRSVDVAKILIE--ADPHVPYSANRNSETPLYMAAANGSVKIVAKIL 331
             AV    V   K+L+E  ADP +      +    + +A A G   +  +++
Sbjct: 107 LYAVHGNHVKCVKMLLESGADPTI---ETDSGYNSMDLAVALGYRSVQ-QVI 154

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 94.4 bits (236), Expect = 8e-23
 Identities = 33/168 (19%), Positives = 62/168 (36%), Gaps = 17/168 (10%)

Query: 205 NTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCP 262
           +  +H+      +  +   I+     +     +    TPL  A A+G   +V  +LQN  
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQENVIN---HTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60

Query: 263 ESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETPLYMAAA 320
           +       +   + + + L  A      D+ K+L++   D +     + N  TPL  A  
Sbjct: 61  D------PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE---YDWNGGTPLLYAVH 111

Query: 321 NGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRG 368
              VK V  +L+    P  E   G  ++  AV      + + V+    
Sbjct: 112 GNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQ-VIESHL 158

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 85.1 bits (212), Expect = 2e-19
 Identities = 31/166 (18%), Positives = 53/166 (31%), Gaps = 46/166 (27%)

Query: 79  NAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPL 135
           N     G +PL  AA  G  A+VEFL+          + G +       ++  + + + L
Sbjct: 30  NHTDEEGFTPLMWAAAHGQIAVVEFLL----------QNGAD------PQLLGKGRESAL 73

Query: 136 HEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIV-------AEILQ 186
             A      D+VK+L+    D +     + N  T L  AV     + V       A+   
Sbjct: 74  SLACSKGYTDIVKMLLDCGVDVNE---YDWNGGTPLLYAVHGNHVKCVKMLLESGADP-- 128

Query: 187 NCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHV 230
                          +     +  AV L    V +++         
Sbjct: 129 -----------TIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQ 163

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 75.5 bits (187), Expect = 3e-16
 Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 11/119 (9%)

Query: 237 NSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKIL 296
            +   ++   A G    +A  ++          +  T+EE  TPL  A     + V + L
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENV------INHTDEEGFTPLMWAAAHGQIAVVEFL 55

Query: 297 IE--ADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVY 353
           ++  ADP +     +  E+ L +A + G   IV  +L           +G T L  AV+
Sbjct: 56  LQNGADPQL---LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVH 111

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 69.7 bits (172), Expect = 3e-14
 Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 22/110 (20%)

Query: 78  ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
                +S L LA  KG+T IV+ L+          + GV+      +   +    TPL  
Sbjct: 65  LGKGRESALSLACSKGYTDIVKMLL----------DCGVD------VNEYDWNGGTPLLY 108

Query: 138 AVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEIL 185
           AV    V  VK+L++  ADP +      +    + +AVA G   +  +++
Sbjct: 109 AVHGNHVKCVKMLLESGADPTI---ETDSGYNSMDLAVALGYRSVQ-QVI 154

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  104 bits (261), Expect = 4e-26
 Identities = 39/192 (20%), Positives = 69/192 (35%), Gaps = 46/192 (23%)

Query: 78  ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
            + +    +    ++G+   V   +              ++    +    ++   +PLH 
Sbjct: 1   GSPEFMDDIFTQCREGNAVAVRLWL--------------DNTENDL-NQGDDHGFSPLHW 45

Query: 138 AVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIV-------AEILQNC 188
           A R     VV++LI   A  +V    NR  +T L++A ++G  +IV       A+I    
Sbjct: 46  ACREGRSAVVEMLIMRGARINV---MNRGDDTPLHLAASHGHRDIVQKLLQYKADI---- 98

Query: 189 PQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAV 246
                       NE  N PLH A    +  V + L+   A   +    N+  E P+  A 
Sbjct: 99  ---------NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI---CNKYGEMPVDKAK 146

Query: 247 ANGSAEIVAEIL 258
           A     +  E  
Sbjct: 147 APLRELLR-ERA 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 92.9 bits (232), Expect = 3e-22
 Identities = 41/178 (23%), Positives = 65/178 (36%), Gaps = 41/178 (23%)

Query: 79  NAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERG--VESAARQILKMTNEEQNT 133
           N     G SPLH A ++G +A+VE LI           RG  +           N   +T
Sbjct: 33  NQGDDHGFSPLHWACREGRSAVVEMLI----------MRGARINV--------MNRGDDT 74

Query: 134 PLHEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQS 191
           PLH A      D+V+ L++  AD +     N +    L+ A   G  ++  +++ N    
Sbjct: 75  PLHLAASHGHRDIVQKLLQYKADINA---VNEHGNVPLHYACFWGQDQVAEDLVAN---- 127

Query: 192 AARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANG 249
            A   +   N+    P+ +A    R  + +   K         N N   P       G
Sbjct: 128 GAL--VSICNKYGEMPVDKAKAPLRELLRERAEKMG------QNLN-RIPYKDTFWKG 176

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 92.9 bits (232), Expect = 3e-22
 Identities = 29/177 (16%), Positives = 57/177 (32%), Gaps = 26/177 (14%)

Query: 201 NEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIV------ 254
           + E    +    R      V++ +    +     + +  +PL+ A   G + +V      
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 255 -AEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNS 311
            A I                N   +TPLH A      D+ + L++  AD +     N + 
Sbjct: 62  GARI-------------NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA---VNEHG 105

Query: 312 ETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRG 368
             PL+ A   G  ++   ++      +     G+  +  A       + E      G
Sbjct: 106 NVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRE-RAEKMG 161

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 76.3 bits (189), Expect = 2e-16
 Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 11/137 (8%)

Query: 234 ANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVA 293
            +      ++     G+A  V   L N   +     L + ++   +PLH A R     V 
Sbjct: 1   GSPEFMDDIFTQCREGNAVAVRLWLDN---TEND--LNQGDDHGFSPLHWACREGRSAVV 55

Query: 294 KILIE--ADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAA 351
           ++LI   A  +V    NR  +TPL++AA++G   IV K+LQ           G   LH A
Sbjct: 56  EMLIMRGARINV---MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYA 112

Query: 352 VYTYPTDILERVLIVRG 368
            +     + E  L+  G
Sbjct: 113 CFWGQDQVAE-DLVANG 128

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  103 bits (260), Expect = 5e-26
 Identities = 44/191 (23%), Positives = 75/191 (39%), Gaps = 47/191 (24%)

Query: 82  GDS-PLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVR 140
           GDS  +H  A +G    ++  +           +G       + K  +E   TPL  A  
Sbjct: 1   GDSLSIHQLAAQGELDQLKEHL----------RKG----DNLVNK-PDERGFTPLIWASA 45

Query: 141 LRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIV-------AEILQNCPQS 191
              ++ V+ L++  ADPH+     +  E+ L +A   G  +IV        +I       
Sbjct: 46  FGEIETVRFLLEWGADPHI---LAKERESALSLASTGGYTDIVGLLLERDVDI------- 95

Query: 192 AARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANG 249
                    +    TPL  AVR   V  V+ L+   AD         +  TP+ +AVA G
Sbjct: 96  ------NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT---EADSGYTPMDLAVALG 146

Query: 250 SAEIVAEILQN 260
             ++  ++++N
Sbjct: 147 YRKVQ-QVIEN 156

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  102 bits (256), Expect = 2e-25
 Identities = 35/187 (18%), Positives = 66/187 (35%), Gaps = 22/187 (11%)

Query: 132 NTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQS 191
           +  +H+      +D +K  ++   ++    +    T L  A A G  E V  +L+     
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD- 61

Query: 192 AARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANG 249
                     +E+ + L  A      D+V +L++   D ++    + N  TPL  AV   
Sbjct: 62  -----PHILAKERESALSLASTGGYTDIVGLLLERDVDINI---YDWNGGTPLLYAVRGN 113

Query: 250 SAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSA 307
             + V  +L    +      L    +   TP+  AV L    V +++            +
Sbjct: 114 HVKCVEALLARGAD------LTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQ---S 164

Query: 308 NRNSETP 314
           N     P
Sbjct: 165 NLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 97.9 bits (245), Expect = 5e-24
 Identities = 34/166 (20%), Positives = 62/166 (37%), Gaps = 12/166 (7%)

Query: 205 NTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPES 264
           +  +H+      +D +K  ++   ++    +    TPL  A A G  E V  +L+   + 
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD- 61

Query: 265 AARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETPLYMAAANG 322
                     +E+ + L  A      D+  +L+E   D ++    + N  TPL  A    
Sbjct: 62  -----PHILAKERESALSLASTGGYTDIVGLLLERDVDINI---YDWNGGTPLLYAVRGN 113

Query: 323 SVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRG 368
            VK V  +L +      E   G T +  AV      + + V+    
Sbjct: 114 HVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQ-VIENHI 158

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 88.6 bits (221), Expect = 9e-21
 Identities = 33/168 (19%), Positives = 58/168 (34%), Gaps = 32/168 (19%)

Query: 78  ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
            + +G +PL  A+  G    V FL+          E G +        +  +E+ + L  
Sbjct: 32  PDERGFTPLIWASAFGEIETVRFLL----------EWGAD------PHILAKERESALSL 75

Query: 138 AVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQ 195
           A      D+V +L++   D ++    + N  T L  AV     + V  +L          
Sbjct: 76  ASTGGYTDIVGLLLERDVDINI---YDWNGGTPLLYAVRGNHVKCVEALLARGAD----- 127

Query: 196 MLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETP 241
            L    +   TP+  AV L    V +++            +N     P
Sbjct: 128 -LTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQ---SNLVPADP 171

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  102 bits (256), Expect = 1e-25
 Identities = 40/189 (21%), Positives = 69/189 (36%), Gaps = 48/189 (25%)

Query: 82  GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
               L  AA+ G    V  L+            G            +    +PLH A + 
Sbjct: 2   LGKKLLEAARAGQDDEVRILM----------ANGAPFTT-------DWLGTSPLHLAAQY 44

Query: 142 RSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIV-------AEILQNCPQSA 192
                 ++L++         +  +   T L+MA + G A IV       A++        
Sbjct: 45  GHFSTTEVLLRAGVSRD---ARTKVDRTPLHMAASEGHANIVEVLLKHGADV-------- 93

Query: 193 ARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGS 250
                   +  + T LH A      +VV++LIK  AD H     ++  +T   +++ NG+
Sbjct: 94  -----NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT---QSKFCKTAFDISIDNGN 145

Query: 251 AEIVAEILQ 259
            ++  EILQ
Sbjct: 146 EDLA-EILQ 153

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 94.4 bits (236), Expect = 6e-23
 Identities = 41/212 (19%), Positives = 71/212 (33%), Gaps = 72/212 (33%)

Query: 132 NTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQS 191
              L EA R    D V+IL+      +  A                              
Sbjct: 3   GKKLLEAARAGQDDEVRILM------ANGAPFT--------------------------- 29

Query: 192 AARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANG 249
                   T+    +PLH A +       ++L++         +  +   TPL+MA + G
Sbjct: 30  --------TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD---ARTKVDRTPLHMAASEG 78

Query: 250 SAEIV-------AEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--AD 300
            A IV       A++                +  + T LH A      +V ++LI+  AD
Sbjct: 79  HANIVEVLLKHGADV-------------NAKDMLKMTALHWATEHNHQEVVELLIKYGAD 125

Query: 301 PHVPYSANRNSETPLYMAAANGSVKIVAKILQ 332
            H     ++  +T   ++  NG+  +  +ILQ
Sbjct: 126 VHT---QSKFCKTAFDISIDNGNEDLA-EILQ 153

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 87.1 bits (217), Expect = 2e-20
 Identities = 31/173 (17%), Positives = 61/173 (35%), Gaps = 41/173 (23%)

Query: 205 NTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIV-------AEI 257
              L EA R  + D V+IL+        + +    +PL++A   G               
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPF--TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 258 LQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETPL 315
             +           +T  ++ TPLH A      ++ ++L++  AD +   + +    T L
Sbjct: 61  --D----------ARTKVDR-TPLHMAASEGHANIVEVLLKHGADVN---AKDMLKMTAL 104

Query: 316 YMAAANGSVKIV-------AKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
           + A  +   ++V       A +  +           KTA   ++     D+ E
Sbjct: 105 HWATEHNHQEVVELLIKYGADVHTQ-------SKFCKTAFDISIDNGNEDLAE 150

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  101 bits (255), Expect = 2e-25
 Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 47/191 (24%)

Query: 79  NAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEA 138
           N++ D  L  AAK G    V+ L      Q ++             +     Q+TPLH A
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLC---TVQSVN------------CRDIEGRQSTPLHFA 49

Query: 139 VRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIV-------AEILQNCP 189
                V VV+ L++  AD H   + ++     L+ A + G  E+        A +     
Sbjct: 50  AGYNRVSVVEYLLQHGADVH---AKDKGGLVPLHNACSYGHYEVAELLVKHGAVV----- 101

Query: 190 QSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVA 247
                      +  + TPLHEA    + ++ K+L++  ADP      NR+  TPL +   
Sbjct: 102 --------NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK---KNRDGNTPLDLV-K 149

Query: 248 NGSAEIVAEIL 258
           +G  +I  ++L
Sbjct: 150 DGDTDIQ-DLL 159

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 87.4 bits (218), Expect = 2e-20
 Identities = 43/184 (23%), Positives = 64/184 (34%), Gaps = 41/184 (22%)

Query: 201 NEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIV------ 254
           N E +  L EA +   V+ VK L                TPL+ A       +V      
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64

Query: 255 -AEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNS 311
            A++                ++    PLH A      +VA++L++  A  +V   A+   
Sbjct: 65  GADV-------------HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV---ADLWK 108

Query: 312 ETPLYMAAANGSVKIV-------AKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVL 364
            TPL+ AAA G  +I        A   +K         DG T L        TDI + +L
Sbjct: 109 FTPLHEAAAKGKYEICKLLLQHGADPTKK-------NRDGNTPLDLVKDGD-TDIQD-LL 159

Query: 365 IVRG 368
               
Sbjct: 160 RGDA 163

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  103 bits (257), Expect = 3e-25
 Identities = 48/252 (19%), Positives = 91/252 (36%), Gaps = 38/252 (15%)

Query: 82  GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
                +LA       + E ++                        T+++  T LH A   
Sbjct: 7   NIMICNLAYSGKLDELKERIL----------ADKSL------ATRTDQDSRTALHWACSA 50

Query: 142 RSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEK 199
              ++V+ L++     +     +    + L++A + G  EIV  +L           +  
Sbjct: 51  GHTEIVEFLLQLGVPVN---DKDDAGWSPLHIAASAGXDEIVKALLVKGAH------VNA 101

Query: 200 TNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQ 259
            N+   TPLH A    R ++  +L++   +   + +    T ++ A A G+ ++V  +L 
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPD-AKDHYDATAMHRAAAKGNLKMVHILLF 160

Query: 260 NCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAA 319
                         + E NTPLH A     V+ AK L+     + Y  N+  +TPL +A 
Sbjct: 161 YKAS------TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI-YIENKEEKTPLQVAK 213

Query: 320 ANGSVKIVAKIL 331
                  +    
Sbjct: 214 GG---LGLILKR 222

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 93.4 bits (232), Expect = 9e-22
 Identities = 42/203 (20%), Positives = 86/203 (42%), Gaps = 18/203 (8%)

Query: 164 NSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKIL 223
           ++  +  +A +    E+   IL +           +T+++  T LH A      ++V+ L
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSL------ATRTDQDSRTALHWACSAGHTEIVEFL 59

Query: 224 IK--ADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPL 281
           ++     +     +    +PL++A + G  EIV  +L           +   N+   TPL
Sbjct: 60  LQLGVPVN---DKDDAGWSPLHIAASAGXDEIVKALLVKGAH------VNAVNQNGCTPL 110

Query: 282 HEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEG 341
           H A      ++A +L+E   +   + +    T ++ AAA G++K+V  +L    S   + 
Sbjct: 111 HYAASKNRHEIAVMLLEGGANPD-AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD 169

Query: 342 PDGKTALHAAVYTYPTDILERVL 364
            +G T LH A      +  + ++
Sbjct: 170 TEGNTPLHLACDEERVEEAKFLV 192

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 93.4 bits (232), Expect = 1e-21
 Identities = 47/230 (20%), Positives = 83/230 (36%), Gaps = 37/230 (16%)

Query: 79  NAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPL 135
                   + LH A   GHT IVEFL+          + GV       +   ++   +PL
Sbjct: 34  TRTDQDSRTALHWACSAGHTEIVEFLL----------QLGVP------VNDKDDAGWSPL 77

Query: 136 HEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQ 195
           H A      ++VK L+    HV+ + N+N  T L+ A +    EI   +L+         
Sbjct: 78  HIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN----- 131

Query: 196 MLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVA 255
             +  +    T +H A     + +V IL+          +    TPL++A      E   
Sbjct: 132 -PDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST-NIQDTEGNTPLHLACDEERVEEAK 189

Query: 256 EILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHV 303
            ++           +   N+E+ TPL  A     + +    +    +  +
Sbjct: 190 FLVTQGAS------IYIENKEEKTPLQVAK--GGLGLILKRLAEGEEASM 231

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  101 bits (255), Expect = 5e-25
 Identities = 40/240 (16%), Positives = 69/240 (28%), Gaps = 72/240 (30%)

Query: 78  ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
            +  G+    +  +K     ++FL    N +                   +    TPL  
Sbjct: 4   MDKNGEIVEKIKDEKSINQNLDFLR---NYR-------------------DSYNRTPLMV 41

Query: 138 AVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIV-------AEILQNC 188
           A  L   + +  L++           +    T L  AV N    I        + +    
Sbjct: 42  ACMLGMENAIDKLVENFDKLE---DKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV---- 94

Query: 189 PQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAV 246
                       +    TPL  ++     ++   L++  A+ +     N   ETPL +A 
Sbjct: 95  ---------NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN---DRNLEGETPLIVAS 142

Query: 247 ANGSAEIV-------AEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEA 299
             G +EIV       A+I                +    T    A      +V KI  E 
Sbjct: 143 KYGRSEIVKKLLELGADI-------------SARDLTGLTAEASARIFGRQEVIKIFTEV 189

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 94.4 bits (236), Expect = 1e-22
 Identities = 37/224 (16%), Positives = 73/224 (32%), Gaps = 57/224 (25%)

Query: 160 SANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDV 219
             ++N E +  +       +   + L+N           + +  + TPL  A  L   + 
Sbjct: 3   HMDKNGEIVEKIKDEKSINQN-LDFLRN----------YRDSYNR-TPLMVACMLGMENA 50

Query: 220 VKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIV-------AEILQNCPESAARQML 270
           +  L++           +    T L  AV N    I        + +             
Sbjct: 51  IDKLVENFDKLE---DKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV------------- 94

Query: 271 EKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETPLYMAAANGSVKIV- 327
              +    TPL  ++     +++  L+E  A+ +     N   ETPL +A+  G  +IV 
Sbjct: 95  NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN---DRNLEGETPLIVASKYGRSEIVK 151

Query: 328 ------AKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLI 365
                 A I  +          G TA  +A      ++++ +  
Sbjct: 152 KLLELGADISAR-------DLTGLTAEASARIFGRQEVIK-IFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 45.5 bits (109), Expect = 1e-05
 Identities = 18/102 (17%), Positives = 28/102 (27%), Gaps = 22/102 (21%)

Query: 274 NEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV------ 327
           ++                    L           +  + TPL +A   G    +      
Sbjct: 5   DKNGEIVEKIKDEKSINQNLDFLRNY-------RDSYNRTPLMVACMLGMENAIDKLVEN 57

Query: 328 -AKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRG 368
             K+  K         +G TAL  AV      I E  L+ +G
Sbjct: 58  FDKLEDK-------DIEGSTALIWAVKNNRLGIAE-KLLSKG 91

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  105 bits (264), Expect = 6e-25
 Identities = 43/272 (15%), Positives = 82/272 (30%), Gaps = 42/272 (15%)

Query: 78  ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
             A+      LAA+ GH  ++  L               E A  +I+ M   E       
Sbjct: 124 IQAENYQAFRLAAENGHLHVLNRLC--------------ELAPTEIMAMIQAENYHAFRL 169

Query: 138 AVRLRSVDVVKILIKADPHVSYSA--NRNSETLLYMAVANGSAEIVAEILQNCPQSAARQ 195
           A     + V+  L +  P  + +     N     + AV  G   ++  +L      A  +
Sbjct: 170 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAE 229

Query: 196 MLEKTN------------EEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLY 243
           + E                 +   +H+A +L   D V  L+                 L 
Sbjct: 230 IHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSE------CLQGFYMLR 283

Query: 244 MAVANGSAEIVAEILQNCPESAARQML---EKTNEEQNTPLHEAVRLRSVDVAKILIEAD 300
             +     E++ + ++        + L        + N  L  A+RL +     +L+   
Sbjct: 284 NLIRRN-DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS-- 340

Query: 301 PHVPYSANRNSETPLYMAAANGSVKIVAKILQ 332
             +P           Y+    G + + A  L+
Sbjct: 341 --IPSVLALTKANNYYINETGGRLDLRAVALE 370

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 75.4 bits (185), Expect = 8e-15
 Identities = 29/266 (10%), Positives = 67/266 (25%), Gaps = 37/266 (13%)

Query: 128 NEEQNTPLHEAVR---LRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEI 184
             +       A       ++D + +L+ +D  V       +     +A  NG   ++  +
Sbjct: 89  GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVK-VIQAENYQAFRLAAENGHLHVLNRL 147

Query: 185 LQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSA--NRNSETPL 242
            +  P      +      E       A     + V+  L +  P    +     N     
Sbjct: 148 CELAPTEIMAMI----QAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFR 203

Query: 243 YMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPH 302
           + AV  G   ++  +L           L      +              V   +      
Sbjct: 204 WAAVGRGHHNVINFLLDCPVM------LAYAEIHEFEYGE-------KYVNPFIARH--- 247

Query: 303 VPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILER 362
              +  +       ++  +G   +V K          E   G   L   +      +L+ 
Sbjct: 248 --VNRLKEMHDAFKLSNPDGVFDLVTK---------SECLQGFYMLRNLIRRNDEVLLDD 296

Query: 363 VLIVRGTFKPQEIQELSKNVGRGQYP 388
           +  +      + +   +   G     
Sbjct: 297 IRFLLSIPGIKALAPTATIPGDANEL 322

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 56.9 bits (137), Expect = 7e-09
 Identities = 24/159 (15%), Positives = 49/159 (30%), Gaps = 9/159 (5%)

Query: 196 MLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVA 255
            L  T   +       +     +     + +D H        SE   ++A   G +  + 
Sbjct: 53  FLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAH---KKGIKSEVICFVAAITGCSSAL- 108

Query: 256 EILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYS-ANRNSETP 314
           + L     S    +++    E       A     + V   L E  P    +     +   
Sbjct: 109 DTLCLLLTSDE--IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHA 166

Query: 315 LYMAAANGSVKIVAKILQKCPSPAHE--GPDGKTALHAA 351
             +AA NG + ++ ++ +  P+ A      +   A   A
Sbjct: 167 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA 205

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 53.8 bits (129), Expect = 6e-08
 Identities = 14/111 (12%), Positives = 37/111 (33%), Gaps = 12/111 (10%)

Query: 77  QANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLH 136
               +G   L    ++    +++   +        ++    +A          + N  L 
Sbjct: 273 SECLQGFYMLRNLIRRNDEVLLD--DIRFLLSIPGIKALAPTAT------IPGDANELLR 324

Query: 137 EAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQN 187
            A+RL +     +L+     ++ +   N     Y+    G  ++ A  L++
Sbjct: 325 LALRLGNQGACALLLSIPSVLALTKANN----YYINETGGRLDLRAVALEH 371

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 51.5 bits (123), Expect = 3e-07
 Identities = 22/169 (13%), Positives = 51/169 (30%), Gaps = 22/169 (13%)

Query: 74  LLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQ-- 131
            L               + G   +  F+    NR     +    S    +  +  + +  
Sbjct: 217 FLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECL 276

Query: 132 --NTPLHEAVR---LRSVDVVKILIKADPHVSYSANRNSE-----TLLYMAVANGSAEIV 181
                L   +R      +D ++ L+ + P +   A   +       LL +A+  G+    
Sbjct: 277 QGFYMLRNLIRRNDEVLLDDIRFLL-SIPGIKALAPTATIPGDANELLRLALRLGNQGAC 335

Query: 182 AEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHV 230
           A +L      +   + +  N       +      R+D+  + ++   H 
Sbjct: 336 ALLLS---IPSVLALTKANN------YYINETGGRLDLRAVALEHHHHH 375

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 99.5 bits (249), Expect = 9e-25
 Identities = 34/183 (18%), Positives = 59/183 (32%), Gaps = 38/183 (20%)

Query: 78  ANAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTP 134
           A +        L  AA +G    V  L+          E G    A       N     P
Sbjct: 5   AGSSMEPSADWLATAAARGRVEEVRALL----------EAGANPNAP------NSYGRRP 48

Query: 135 LHEAVRLRSVDVVKILIK--ADPHVSYSANRNSETL-LYMAVANGSAEIVAEILQNCPQS 191
           +   +   S  V ++L+   A+P+    A+  + T  ++ A   G  + +  + +     
Sbjct: 49  IQVMMM-GSARVAELLLLHGAEPNC---ADPATLTRPVHDAAREGFLDTLVVLHRA---- 100

Query: 192 AARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSA 251
            AR  L+  +     P+  A  L   DV + L  A                 +  A G +
Sbjct: 101 GAR--LDVRDAWGRLPVDLAEELGHRDVARYLRAAA------GGTRGSNHARIDAAEGPS 152

Query: 252 EIV 254
           +I 
Sbjct: 153 DIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 87.9 bits (219), Expect = 1e-20
 Identities = 36/172 (20%), Positives = 57/172 (33%), Gaps = 35/172 (20%)

Query: 201 NEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIV---- 254
            E     L  A    RV+ V+ L++  A+P+     N     P+ +    GSA +     
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEAGANPNA---PNSYGRRPIQVM-MMGSARVAELLL 64

Query: 255 ---AEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANR 309
              AE   NC                  P+H+A R   +D   +L    A   V    + 
Sbjct: 65  LHGAEP--NC----------ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV---RDA 109

Query: 310 NSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
               P+ +A   G   +  + L+     A  G  G           P+DI +
Sbjct: 110 WGRLPVDLAEELGHRDVA-RYLRA----AAGGTRGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 85.6 bits (213), Expect = 7e-20
 Identities = 36/174 (20%), Positives = 60/174 (34%), Gaps = 28/174 (16%)

Query: 160 SANRNSE---TLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRR 216
           +A  + E     L  A A G  E V  +L+     A        N     P+   +    
Sbjct: 4   AAGSSMEPSADWLATAAARGRVEEVRALLEA---GAN---PNAPNSYGRRPIQVMMM-GS 56

Query: 217 VDVVKILIK--ADPHVPYSANRNSET-PLYMAVANGSAEIVAEILQNCPESAARQMLEKT 273
             V ++L+   A+P+    A+  + T P++ A   G  + +  + +      AR  L+  
Sbjct: 57  ARVAELLLLHGAEPNC---ADPATLTRPVHDAAREGFLDTLVVLHRA----GAR--LDVR 107

Query: 274 NEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
           +     P+  A  L   DVA+ L  A                 + AA G   I 
Sbjct: 108 DAWGRLPVDLAEELGHRDVARYLRAAA------GGTRGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 66.0 bits (162), Expect = 5e-13
 Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 16/127 (12%)

Query: 233 SANRNSE---TPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRS 289
           +A  + E     L  A A G  E V  +L+     A        N     P+   +   S
Sbjct: 4   AAGSSMEPSADWLATAAARGRVEEVRALLEA---GAN---PNAPNSYGRRPIQVMMM-GS 56

Query: 290 VDVAKILIE--ADPHVPYSANRNSET-PLYMAAANGSVKIVAKILQKCPSPAHEGPDGKT 346
             VA++L+   A+P+    A+  + T P++ AA  G +  +  + +           G+ 
Sbjct: 57  ARVAELLLLHGAEPNC---ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRL 113

Query: 347 ALHAAVY 353
            +  A  
Sbjct: 114 PVDLAEE 120

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 99.7 bits (250), Expect = 9e-25
 Identities = 43/191 (22%), Positives = 78/191 (40%), Gaps = 47/191 (24%)

Query: 79  NAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEA 138
            +     L  AA+ G    V  L+            G +  A       +    TPLH A
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILM----------ANGADVNAE------DASGWTPLHLA 54

Query: 139 VRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIV-------AEILQNCP 189
                +++V++L+K  AD +   + +    T L +A   G  EIV       A++     
Sbjct: 55  AFNGHLEIVEVLLKNGADVN---AVDHAGMTPLRLAALFGHLEIVEVLLKNGADV----- 106

Query: 190 QSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVA 247
                      + E +TPLH A     +++V++L+K  AD +     ++  +T   +++ 
Sbjct: 107 --------NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA---QDKFGKTAFDISID 155

Query: 248 NGSAEIVAEIL 258
           NG+ ++  EIL
Sbjct: 156 NGNEDLA-EIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 93.6 bits (234), Expect = 2e-22
 Identities = 41/199 (20%), Positives = 79/199 (39%), Gaps = 53/199 (26%)

Query: 153 ADPHVSYSANRNSETLLYMAVANGSAEIV-------AEILQNCPQSAARQMLEKTNEEQN 205
           +  H  + ++      L  A   G  + V       A++                +    
Sbjct: 4   SHHHHHHGSDLG--KKLLEAARAGRDDEVRILMANGADV-------------NAEDASGW 48

Query: 206 TPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIV-------AE 256
           TPLH A     +++V++L+K  AD +   + +    TPL +A   G  EIV       A+
Sbjct: 49  TPLHLAAFNGHLEIVEVLLKNGADVN---AVDHAGMTPLRLAALFGHLEIVEVLLKNGAD 105

Query: 257 ILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETP 314
           +                + E +TPLH A     +++ ++L++  AD +     ++  +T 
Sbjct: 106 V-------------NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA---QDKFGKTA 149

Query: 315 LYMAAANGSVKIVAKILQK 333
             ++  NG+  +  +ILQK
Sbjct: 150 FDISIDNGNEDLA-EILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 91.3 bits (228), Expect = 9e-22
 Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 30/160 (18%)

Query: 205 NTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIV-------A 255
              L EA R  R D V+IL+   AD +   + + +  TPL++A  NG  EIV       A
Sbjct: 15  GKKLLEAARAGRDDEVRILMANGADVN---AEDASGWTPLHLAAFNGHLEIVEVLLKNGA 71

Query: 256 EILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSET 313
           ++                +    TPL  A     +++ ++L++  AD +     +    T
Sbjct: 72  DV-------------NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA---NDMEGHT 115

Query: 314 PLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVY 353
           PL++AA  G ++IV  +L+       +   GKTA   ++ 
Sbjct: 116 PLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISID 155

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 80.9 bits (201), Expect = 4e-18
 Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 48/163 (29%)

Query: 79  NAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERG--VESAARQILKMTNEEQNT 133
           NA+   G +PLHLAA  GH  IVE L+          + G  V +         +    T
Sbjct: 41  NAEDASGWTPLHLAAFNGHLEIVEVLL----------KNGADVNAV--------DHAGMT 82

Query: 134 PLHEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIV-------AEI 184
           PL  A     +++V++L+K  AD +     +    T L++A   G  EIV       A++
Sbjct: 83  PLRLAALFGHLEIVEVLLKNGADVNA---NDMEGHTPLHLAAMFGHLEIVEVLLKNGADV 139

Query: 185 LQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKAD 227
                           ++   T    ++     D+ +IL K +
Sbjct: 140 -------------NAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 68.5 bits (169), Expect = 9e-14
 Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 28/152 (18%)

Query: 226 ADPHVPYSANRNSETPLYMAVANGSAEIV-------AEILQNCPESAARQMLEKTNEEQN 278
           +  H  + ++      L  A   G  + V       A++                +    
Sbjct: 4   SHHHHHHGSDLG--KKLLEAARAGRDDEVRILMANGADV-------------NAEDASGW 48

Query: 279 TPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPS 336
           TPLH A     +++ ++L++  AD +   + +    TPL +AA  G ++IV  +L+    
Sbjct: 49  TPLHLAAFNGHLEIVEVLLKNGADVN---AVDHAGMTPLRLAALFGHLEIVEVLLKNGAD 105

Query: 337 PAHEGPDGKTALHAAVYTYPTDILERVLIVRG 368
                 +G T LH A      +I+E VL+  G
Sbjct: 106 VNANDMEGHTPLHLAAMFGHLEIVE-VLLKNG 136

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 96.7 bits (242), Expect = 9e-24
 Identities = 38/190 (20%), Positives = 65/190 (34%), Gaps = 46/190 (24%)

Query: 81  KGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVR 140
           +    L  AA +G    V  L+             V   A       N    T L   + 
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLL---------HRELVHPDAL------NRFGKTALQVMMF 45

Query: 141 LRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIV-------AEILQNCPQS 191
             S  +   L+K  A P+V    + +  + ++ A   G  + +       A++       
Sbjct: 46  -GSTAIALELLKQGASPNV---QDTSGTSPVHDAARTGFLDTLKVLVEHGADV------- 94

Query: 192 AARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK-ADPHVPYSANRNSETPLYMAVANGS 250
                    +     P+H AV+     VV  L   +D H     +    TPL +A+  G+
Sbjct: 95  ------NVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHR---RDARGLTPLELALQRGA 145

Query: 251 AEIVAEILQN 260
            ++V +ILQ 
Sbjct: 146 QDLV-DILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 84.4 bits (210), Expect = 2e-19
 Identities = 35/151 (23%), Positives = 57/151 (37%), Gaps = 13/151 (8%)

Query: 205 NTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPES 264
              L  A     V  V+ L+  +   P + NR  +T L +    GS  I  E+L+     
Sbjct: 3   GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGAS- 60

Query: 265 AARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETPLYMAAANG 322
                    +    +P+H+A R   +D  K+L+E  AD +V    +     P+++A   G
Sbjct: 61  -----PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV---PDGTGALPIHLAVQEG 112

Query: 323 SVKIVAKILQKCPSPAHEGPDGKTALHAAVY 353
              +V   L            G T L  A+ 
Sbjct: 113 HTAVV-SFLAAESDLHRRDARGLTPLELALQ 142

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 75.1 bits (186), Expect = 3e-16
 Identities = 33/152 (21%), Positives = 62/152 (40%), Gaps = 32/152 (21%)

Query: 79  NAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPL 135
           +A    G + L +    G TAI   L+          ++G          + +    +P+
Sbjct: 30  DALNRFGKTALQVMM-FGSTAIALELL----------KQGAS------PNVQDTSGTSPV 72

Query: 136 HEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAA 193
           H+A R   +D +K+L++  AD +V    +      +++AV  G   +V   L     + +
Sbjct: 73  HDAARTGFLDTLKVLVEHGADVNV---PDGTGALPIHLAVQEGHTAVV-SFL----AAES 124

Query: 194 RQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK 225
              L + +    TPL  A++    D+V IL  
Sbjct: 125 D--LHRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 68.2 bits (168), Expect = 8e-14
 Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 21/111 (18%)

Query: 78  ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
            +  G SP+H AA+ G    ++ L+          E G +          +     P+H 
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLV----------EHGADVNVP------DGTGALPIHL 107

Query: 138 AVRLRSVDVVKILIK-ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQN 187
           AV+     VV  L   +D H     +    T L +A+  G+ ++V +ILQ 
Sbjct: 108 AVQEGHTAVVSFLAAESDLHR---RDARGLTPLELALQRGAQDLV-DILQG 154

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 97.2 bits (243), Expect = 1e-23
 Identities = 36/233 (15%), Positives = 60/233 (25%), Gaps = 70/233 (30%)

Query: 77  QANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLH 136
           +   +G     +  K GH+                     +            E  TP  
Sbjct: 9   RTAGEGAMEYLIEWKDGHSPSWVPSS----------YIAAD---------VVSEYETPWW 49

Query: 137 EAVRLRSVDVVKILIK-ADPHVSYSANRNSETLLYMAVANGSAEIV-------AEILQNC 188
            A R      +  L++  D     + + N  T L      GS + V       A++  + 
Sbjct: 50  TAARKADEQALSQLLEDRDVD---AVDENGRTALLFVAGLGSDKCVRLLAEAGADL--D- 103

Query: 189 PQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAV 246
                     +      T LH A    R +VV+ L++  AD  V    +    T L +A 
Sbjct: 104 ---------HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV---EDERGLTALELAR 151

Query: 247 ANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEA 299
                                            P+    R+    V  +L   
Sbjct: 152 EILKTTPK-----------------------GNPMQFGRRIGLEKVINVLEGQ 181

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 87.9 bits (219), Expect = 2e-20
 Identities = 31/170 (18%), Positives = 55/170 (32%), Gaps = 12/170 (7%)

Query: 199 KTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEIL 258
           +T  E         +                V        ETP + A      + ++++L
Sbjct: 9   RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALSQLL 64

Query: 259 QNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMA 318
           ++         ++  +E   T L     L S    ++L EA   + +   R   T L+MA
Sbjct: 65  EDRD-------VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 117

Query: 319 AANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRG 368
           A     ++V  +++       E   G TAL  A     T       +  G
Sbjct: 118 AGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKG-NPMQFG 166

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 98.8 bits (247), Expect = 1e-23
 Identities = 34/283 (12%), Positives = 71/283 (25%), Gaps = 89/283 (31%)

Query: 82  GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
           G   L    +          I            G+           N      L ++   
Sbjct: 5   GQVSLPPGKRTNLRKTGSERI----------AHGMRVKF-------NPLPLALLLDSSLE 47

Query: 142 RSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTN 201
              D+V+ +I          + +                                    N
Sbjct: 48  GEFDLVQRII------YEVDDPS----------------------------------LPN 67

Query: 202 EEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIV----- 254
           +E  T LH AV     ++VK L++   + +   +A+ +  TPL+ A +  + ++      
Sbjct: 68  DEGITALHNAVCAGHTEIVKFLVQFGVNVN---AADSDGWTPLHCAASCNNVQVCKFLVE 124

Query: 255 --AEILQNCPESAARQMLEKTNEEQN--TPLHEAVRLRSVDVAKILIE--ADPHVPYSAN 308
             A +               T  +        E +       ++ L        +    N
Sbjct: 125 SGAAV------------FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGI---MN 169

Query: 309 RNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAA 351
           +     L+        ++  K    C +  H   + +     A
Sbjct: 170 KGVIYALWDYEPQNDDELPMKEGD-CMTIIHREDEDEIEWWWA 211

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 90.0 bits (224), Expect = 1e-20
 Identities = 34/208 (16%), Positives = 57/208 (27%), Gaps = 34/208 (16%)

Query: 164 NSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKIL 223
             +  L         +  +E + +      R    K N      L ++      D+V+ +
Sbjct: 4   TGQVSLPPGKRTNLRKTGSERIAHG----MRV---KFNPLPLALLLDSSLEGEFDLVQRI 56

Query: 224 IK--ADPHVPYSANRNSETPLYMAVANGSAEIV-------AEILQNCPESAARQMLEKTN 274
           I    DP      N    T L+ AV  G  EIV         +                +
Sbjct: 57  IYEVDDPS---LPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-------------NAAD 100

Query: 275 EEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETPLYMAAANGSVKIVAKILQ 332
            +  TPLH A    +V V K L+E  A       ++  +          G  +    +  
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG 160

Query: 333 KCPSPAHEGPDGKTALHAAVYTYPTDIL 360
                         AL         ++ 
Sbjct: 161 VQEKMGIMNKGVIYALWDYEPQNDDELP 188

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 88.8 bits (221), Expect = 4e-20
 Identities = 27/180 (15%), Positives = 62/180 (34%), Gaps = 29/180 (16%)

Query: 78  ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
            N    + L  ++ +G   +V+ +I              +        + N+E  T LH 
Sbjct: 33  FNPLPLALLLDSSLEGEFDLVQRII----------YEVDD------PSLPNDEGITALHN 76

Query: 138 AVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQ 195
           AV     ++VK L++   + +   +A+ +  T L+ A +  + ++  + L      AA  
Sbjct: 77  AVCAGHTEIVKFLVQFGVNVN---AADSDGWTPLHCAASCNNVQVC-KFLVE--SGAAVF 130

Query: 196 MLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEI 253
            +  ++ +      E +        + L        +    N+     L+        E+
Sbjct: 131 AMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGI---MNKGVIYALWDYEPQNDDEL 187

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 85.7 bits (213), Expect = 4e-19
 Identities = 28/173 (16%), Positives = 52/173 (30%), Gaps = 25/173 (14%)

Query: 205 NTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPES 264
              L    R          I     V    N      L  +   G  ++V  I+    + 
Sbjct: 6   QVSLPPGKRTNLRKTGSERIAHGMRV--KFNPLPLALLLDSSLEGEFDLVQRIIYEVDD- 62

Query: 265 AARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETPLYMAAANG 322
                    N+E  T LH AV     ++ K L++   + +   +A+ +  TPL+ AA+  
Sbjct: 63  -----PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN---AADSDGWTPLHCAASCN 114

Query: 323 SVKIV-------AKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRG 368
           +V++        A +        +            +    T   +  L    
Sbjct: 115 NVQVCKFLVESGAAVFAMT----YSDMQTAADKCEEMEEGYTQCSQ-FLYGVQ 162

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 98.7 bits (246), Expect = 2e-23
 Identities = 47/299 (15%), Positives = 87/299 (29%), Gaps = 74/299 (24%)

Query: 85  PLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRS- 143
            L     +G    +  L+ +       L     +              T L +AV     
Sbjct: 5   RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTE--------GSTGKTCLMKAVLNLQD 56

Query: 144 --VDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTN 201
                +  L+          +  +   L  A                             
Sbjct: 57  GVNACIMPLL------QIDKDSGNPKPLVNAQCT-----------------------DEF 87

Query: 202 EEQNTPLHEAVRLRRVDVVKILIK--ADPHV----------PYSANRNSETPLYMAVANG 249
            + ++ LH A+  R +  VK+L++  AD H+            +     E PL +A    
Sbjct: 88  YQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTK 147

Query: 250 SAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANR 309
             ++V  +L+N  + A+   LE T+   NT LH  V                    + N 
Sbjct: 148 QWDVVTYLLENPHQPAS---LEATDSLGNTVLHALVM------------------IADNS 186

Query: 310 NSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRG 368
              + L +   +G +++ A++             G T L  A      +I    ++ R 
Sbjct: 187 PENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFR-HILQRE 244

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 97.6 bits (243), Expect = 6e-23
 Identities = 47/283 (16%), Positives = 78/283 (27%), Gaps = 68/283 (24%)

Query: 3   RKLYEAAAKGDIEPFR---EIARDELESIVTDVMK-----NTVLHVNIMRSHLTLQTEEG 54
            +L+   ++G  E      E  R   + +            T L   ++           
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQ-------- 55

Query: 55  EISSESTEFVEQILDL-----CPSLLFQANA-----KGDSPLHLAAKKGHTAIVEFLIVF 104
                    +  +L +      P  L  A       +G S LH+A +K     V+ L+  
Sbjct: 56  ---DGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLV-- 110

Query: 105 ANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILI-----KADPHVSY 159
            N   +   R      ++           PL  A   +  DVV  L+      A      
Sbjct: 111 ENGADVH-LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEA-- 167

Query: 160 SANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDV 219
             +    T+L+  V                           N  +N+ L   +    + +
Sbjct: 168 -TDSLGNTVLHALVMIAD-----------------------NSPENSALVIHMYDGLLQM 203

Query: 220 VKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIVAEILQN 260
              L        +    N    TPL +A   G  EI   ILQ 
Sbjct: 204 GARLCPTVQLEEIS---NHQGLTPLKLAAKEGKIEIFRHILQR 243

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 92.5 bits (231), Expect = 2e-22
 Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 17/138 (12%)

Query: 200 TNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIVAEI 257
           TN    T LH A     +  V+ L++  +DP+V    +    TPL+ A  +G  ++V  +
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNV---KDHAGWTPLHEACNHGHLKVVELL 62

Query: 258 LQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETPL 315
           LQ+         +  T  + ++PLH+A +   VD+ K+L+   A  +     N     P+
Sbjct: 63  LQHKAL------VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA---VNIFGLRPV 113

Query: 316 YMAAANGSVKIVAKILQK 333
                     ++  + +K
Sbjct: 114 DYTDDESMKSLL-LLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 86.7 bits (216), Expect = 2e-20
 Identities = 35/185 (18%), Positives = 65/185 (35%), Gaps = 62/185 (33%)

Query: 78  ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
            N +G++ LH+A+ KG    VE+L+          + G +   +      +    TPLHE
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLL----------QNGSDPNVK------DHAGWTPLHE 49

Query: 138 AVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQML 197
           A     + VV++L+       + A  N                                 
Sbjct: 50  ACNHGHLKVVELLL------QHKALVN--------------------------------- 70

Query: 198 EKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIVA 255
             T  + ++PLH+A +   VD+VK+L+   A  +     N     P+          ++ 
Sbjct: 71  -TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA---VNIFGLRPVDYTDDESMKSLL- 125

Query: 256 EILQN 260
            + + 
Sbjct: 126 LLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 72.8 bits (180), Expect = 1e-15
 Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 25/137 (18%)

Query: 234 ANRNSETPLYMAVANGSAEIV-------AEILQNCPESAARQMLEKTNEEQNTPLHEAVR 286
            N   ET L++A   G    V       ++                 +    TPLHEA  
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDP-------------NVKDHAGWTPLHEACN 52

Query: 287 LRSVDVAKILIE--ADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDG 344
              + V ++L++  A  +        +++PL+ AA NG V IV  +L    S       G
Sbjct: 53  HGHLKVVELLLQHKALVNT---TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFG 109

Query: 345 KTALHAAVYTYPTDILE 361
              +          +L 
Sbjct: 110 LRPVDYTDDESMKSLLL 126

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 62.1 bits (152), Expect = 7e-12
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 6/98 (6%)

Query: 273 TNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETPLYMAAANGSVKIVAKI 330
           TN    T LH A     +   + L++  +DP+V    +    TPL+ A  +G +K+V  +
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNV---KDHAGWTPLHEACNHGHLKVVELL 62

Query: 331 LQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRG 368
           LQ        G    + LH A      DI++ +L+  G
Sbjct: 63  LQHKALVNTTGYQNDSPLHDAAKNGHVDIVK-LLLSYG 99

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 92.1 bits (230), Expect = 4e-22
 Identities = 33/187 (17%), Positives = 65/187 (34%), Gaps = 43/187 (22%)

Query: 81  KGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVR 140
              + L  AA +G    +  L+          +  V       +   N    T L    +
Sbjct: 4   PWGNELASAAARGDLEQLTSLL----------QNNVN------VNAQNGFGRTALQVM-K 46

Query: 141 LRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIV-------AEILQNCPQS 191
           L + ++ + L+   A+P +    +R    +++ A   G  + +       A++       
Sbjct: 47  LGNPEIARRLLLRGANPDL---KDRTGFAVIHDAARAGFLDTLQTLLEFQADV------- 96

Query: 192 AARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSA 251
                    + E N PLH A +   + VV+ L+K         N   +T   +A   G  
Sbjct: 97  ------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN 150

Query: 252 EIVAEIL 258
           E+V  ++
Sbjct: 151 EVV-SLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 87.1 bits (217), Expect = 3e-20
 Identities = 27/182 (14%), Positives = 63/182 (34%), Gaps = 36/182 (19%)

Query: 128 NEEQNTPLHEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIV---- 181
            E     L  A     ++ +  L++   + +   + N    T L +    G+ EI     
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVN---AQNGFGRTALQVM-KLGNPEIARRLL 57

Query: 182 ---AEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANR 236
              A               +  +      +H+A R   +D ++ L++  AD ++    + 
Sbjct: 58  LRGANP-------------DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI---EDN 101

Query: 237 NSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKIL 296
               PL++A   G   +V  ++++     A  +  + ++   T    A      +V  ++
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHT----ASNVGHRNHKGD-TACDLARLYGRNEVVSLM 156

Query: 297 IE 298
             
Sbjct: 157 QA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 85.9 bits (214), Expect = 7e-20
 Identities = 32/181 (17%), Positives = 64/181 (35%), Gaps = 35/181 (19%)

Query: 201 NEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIV---- 254
            E     L  A     ++ +  L++   + +   + N    T L +    G+ EI     
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVN---AQNGFGRTALQVM-KLGNPEIARRLL 57

Query: 255 ---AEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANR 309
              A               +  +      +H+A R   +D  + L+E  AD ++    + 
Sbjct: 58  LRGANP-------------DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI---EDN 101

Query: 310 NSETPLYMAAANGSVKIVAKIL--QKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVR 367
               PL++AA  G +++V + L      +  H    G TA   A      +++  ++   
Sbjct: 102 EGNLPLHLAAKEGHLRVV-EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS-LMQAN 159

Query: 368 G 368
           G
Sbjct: 160 G 160

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 74.3 bits (184), Expect = 7e-16
 Identities = 26/152 (17%), Positives = 57/152 (37%), Gaps = 30/152 (19%)

Query: 79  NAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPL 135
           NA+   G + L +    G+  I   L+           RG     +      +      +
Sbjct: 32  NAQNGFGRTALQVMK-LGNPEIARRLL----------LRGANPDLK------DRTGFAVI 74

Query: 136 HEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAA 193
           H+A R   +D ++ L++  AD ++    +      L++A   G   +V  ++++     A
Sbjct: 75  HDAARAGFLDTLQTLLEFQADVNI---EDNEGNLPLHLAAKEGHLRVVEFLVKHT----A 127

Query: 194 RQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK 225
             +  + ++   T    A    R +VV ++  
Sbjct: 128 SNVGHRNHKGD-TACDLARLYGRNEVVSLMQA 158

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 90.8 bits (226), Expect = 7e-21
 Identities = 38/229 (16%), Positives = 64/229 (27%), Gaps = 36/229 (15%)

Query: 133 TPLHEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIV-------AE 183
             L +A     ++VV+  +K   DP      N    T L+ A+   +  IV       A 
Sbjct: 23  VLLLDAALTGELEVVQQAVKEMNDPS---QPNEEGITALHNAICGANYSIVDFLITAGAN 79

Query: 184 ILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLY 243
           +                +    TPLH A       +   L++    +  +   +  T   
Sbjct: 80  V-------------NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFE 126

Query: 244 MAVA--NGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADP 301
                  G A+     L +  +S     +   N      L +       D          
Sbjct: 127 KCDPYREGYADCA-TYLADVEQS-----MGLMNSGAVYALWDYSA-EFGDELSFREGESV 179

Query: 302 HVPYSANRNSETPLYMAAANGSVKIVAK-ILQKCPSPAHEGPDGKTALH 349
            V    +   ET  + AA +G    V +      P    +    K   H
Sbjct: 180 TVL-RRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHHHH 227

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 88.9 bits (221), Expect = 3e-20
 Identities = 39/222 (17%), Positives = 70/222 (31%), Gaps = 40/222 (18%)

Query: 147 VKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQ 204
           ++ +++    P  +  A  N   LL  A   G  E+V + ++            + NEE 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND------PSQPNEEG 54

Query: 205 NTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIV-------A 255
            T LH A+      +V  LI   A+ +   S + +  TPL+ A +     I        A
Sbjct: 55  ITALHNAICGANYSIVDFLITAGANVN---SPDSHGWTPLHCAASCNDTVICMALVQHGA 111

Query: 256 EILQNCPESAARQMLEKTNEEQNTPLHEAVRLRS--VDVAKILIE--ADPHVPYSANRNS 311
            I               T  +  T   +    R    D A  L +      +    N  +
Sbjct: 112 AI------------FATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGL---MNSGA 156

Query: 312 ETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVY 353
              L+  +A      ++    +  +        +T    A  
Sbjct: 157 VYALWDYSAEF-GDELSFREGESVTVLRRDGPEETDWWWAAL 197

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 84.2 bits (209), Expect = 1e-18
 Identities = 34/205 (16%), Positives = 59/205 (28%), Gaps = 27/205 (13%)

Query: 77  QANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLH 136
           Q N +G + LH A    + +IV+FLI            G    +       +    TPLH
Sbjct: 49  QPNEEGITALHNAICGANYSIVDFLI----------TAGANVNSP------DSHGWTPLH 92

Query: 137 EAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVA--NGSAEIVAEILQNCPQSAAR 194
            A       +   L++    +  +   +  T          G A+     L +       
Sbjct: 93  CAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCA-TYLAD-----VE 146

Query: 195 QMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIV 254
           Q +   N      L +       D +         V    +   ET  + A  +G    V
Sbjct: 147 QSMGLMNSGAVYALWDYSA-EFGDELSFREGESVTVL-RRDGPEETDWWWAALHGQEGYV 204

Query: 255 AE-ILQNCPESAARQMLEKTNEEQN 278
                   P    ++   K +   +
Sbjct: 205 PRNYFGLFPRVKPQRSKVKHHHHHH 229

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 75.4 bits (186), Expect = 1e-15
 Identities = 26/176 (14%), Positives = 47/176 (26%), Gaps = 29/176 (16%)

Query: 198 EKTNEEQN--TPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEI 253
           +      N    L +A     ++VV+  +K   DP      N    T L+ A+   +  I
Sbjct: 13  KARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPS---QPNEEGITALHNAICGANYSI 69

Query: 254 V-------AEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYS 306
           V       A +                +    TPLH A       +   L++    +  +
Sbjct: 70  VDFLITAGANV-------------NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFAT 116

Query: 307 ANRNSETPLYMAAA--NGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDIL 360
              +  T          G       +     S          AL      +  ++ 
Sbjct: 117 TLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELS 172

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 55.3 bits (134), Expect = 8e-09
 Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 8/102 (7%)

Query: 271 EKTNEEQN--TPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETPLYMAAANGSVKI 326
           +      N    L +A     ++V +  ++   DP      N    T L+ A    +  I
Sbjct: 13  KARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPS---QPNEEGITALHNAICGANYSI 69

Query: 327 VAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRG 368
           V  ++    +       G T LH A     T I    L+  G
Sbjct: 70  VDFLITAGANVNSPDSHGWTPLHCAASCNDTVICM-ALVQHG 110

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 294 KILIE--ADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAA 351
           + ++     P     A  N    L  AA  G +++V + +++   P+    +G TALH A
Sbjct: 2   RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA 61

Query: 352 VYTYPTDILERVLIVRG 368
           +      I++  LI  G
Sbjct: 62  ICGANYSIVD-FLITAG 77

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 90.6 bits (225), Expect = 1e-20
 Identities = 46/250 (18%), Positives = 84/250 (33%), Gaps = 58/250 (23%)

Query: 133 TPLHEAVRLRSV----DVVKILIKADPHVSYSANRNS---------ETLLYMAVANGSA- 178
             L + V   S      ++  L+      ++               +T L  A+ N SA 
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLL------THKKRLTDEEFREPSTGKTCLPKALLNLSAG 60

Query: 179 --EIVAEILQNCPQSAARQMLEKTN-----EEQNTPLHEAVRLRRVDVVKILIK--AD-- 227
             + +  +L    ++   +    +          T LH A+  R    V++L++  AD  
Sbjct: 61  RNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH 120

Query: 228 ---------PHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQN 278
                    P          E PL +A       IV  + +N  + A    L + +   N
Sbjct: 121 AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQA---DLRRQDSRGN 177

Query: 279 TPLHEAVRLRS---------VDVAKILIE------ADPHVPYSANRNSETPLYMAAANGS 323
           T LH  V +             +  +L+        D ++    N +  +PL MAA  G 
Sbjct: 178 TVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK 237

Query: 324 VKIVAKILQK 333
           + I   I+++
Sbjct: 238 IGIFQHIIRR 247

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 82.9 bits (205), Expect = 5e-18
 Identities = 40/248 (16%), Positives = 67/248 (27%), Gaps = 50/248 (20%)

Query: 166 ETLLYMAVANGSAEIVAEILQNCPQSAAR--QMLEKTNEEQNTPLHEAVRLR---RVDVV 220
             +L+  V+ GS + +  +L        R      +      T L +A+      R D +
Sbjct: 6   RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTI 65

Query: 221 KILIKADPHVPY----------SANRNSETPLYMAVANGSAEIVAEIL---------QNC 261
            IL+                        +T L++A+       V E+L         Q  
Sbjct: 66  PILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYV-ELLVEKGADVHAQAR 124

Query: 262 PESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSE-----TPLY 316
                 +           PL  A       +   L E   +    A+   +     T L+
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE---NGHKQADLRRQDSRGNTVLH 181

Query: 317 MAAANGS----------------VKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDIL 360
              A                   +   AK+       A    DG + L  A  T    I 
Sbjct: 182 ALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIF 241

Query: 361 ERVLIVRG 368
           +  +I R 
Sbjct: 242 Q-HIIRRE 248

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 80.6 bits (199), Expect = 3e-17
 Identities = 36/255 (14%), Positives = 78/255 (30%), Gaps = 44/255 (17%)

Query: 2   DRK-LYEAAAKGDIEPFREI--------ARDELESIVTDVMKNTVLHV---NIMRSHL-- 47
           +R  L++  ++G  +    +         R   E         T L     N+       
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 48  -TLQTEEGEISSESTEFV-EQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFA 105
             +  +  E +    EF+     D           +G + LH+A ++     VE L+   
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRD--------VYYRGQTALHIAIERRCKHYVELLV--E 114

Query: 106 NRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNS 165
               +  +        +           PL  A       +V  L +   +    A+   
Sbjct: 115 KGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE---NGHKQADLRR 171

Query: 166 E-----TLLYMAVANGS---------AEIVAEILQNCPQ-SAARQMLEKTNEEQNTPLHE 210
           +     T+L+  VA             ++   +L  C +      +    N +  +PL  
Sbjct: 172 QDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMM 231

Query: 211 AVRLRRVDVVKILIK 225
           A +  ++ + + +I+
Sbjct: 232 AAKTGKIGIFQHIIR 246

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 25/162 (15%), Positives = 43/162 (26%), Gaps = 30/162 (18%)

Query: 239 ETPLYMAVANGSAEIVAEILQNCPESAAR--QMLEKTNEEQNTPLHEAVRLRS---VDVA 293
              L+  V+ GS + +  +L        R      +      T L +A+   S    D  
Sbjct: 6   RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTI 65

Query: 294 KILIEADPHVPY----------SANRNSETPLYMAAANGSVKIV-------AKILQKC-- 334
            IL++                       +T L++A        V       A +  +   
Sbjct: 66  PILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARG 125

Query: 335 -----PSPAHEGPDGKTALHAAVYTYPTDILERVLIVRGTFK 371
                         G+  L  A  T    I+   L   G  +
Sbjct: 126 RFFQPKDEGGYFYFGELPLSLAACTNQPHIVH-YLTENGHKQ 166

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 84.0 bits (209), Expect = 2e-19
 Identities = 31/145 (21%), Positives = 50/145 (34%), Gaps = 31/145 (21%)

Query: 198 EKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIV- 254
                  +  L  A    +V+ V+ L++  ADP+     NR    P+ +    GSA++  
Sbjct: 6   HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNA---LNRFGRRPIQVM-MMGSAQVAE 61

Query: 255 ------AEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYS 306
                 AE   NC                  P+H+A R   +D   +L    A   V   
Sbjct: 62  LLLLHGAEP--NC----------ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV--- 106

Query: 307 ANRNSETPLYMAAANGSVKIVAKIL 331
            +     P+ +A   G   I  + L
Sbjct: 107 CDAWGRLPVDLAEEQGHRDIA-RYL 130

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 81.3 bits (202), Expect = 1e-18
 Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 29/152 (19%)

Query: 78  ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
                D+ L  AA +G    V  L+          E G +  A       N     P+  
Sbjct: 8   LGGSSDAGLATAAARGQVETVRQLL----------EAGADPNAL------NRFGRRPIQV 51

Query: 138 AVRLRSVDVVKILIK--ADPHVSYSANRNSETL-LYMAVANGSAEIVAEILQNCPQSAAR 194
            +   S  V ++L+   A+P+    A+  + T  ++ A   G  + +  + +      AR
Sbjct: 52  MMM-GSAQVAELLLLHGAEPNC---ADPATLTRPVHDAAREGFLDTLVVLHRA----GAR 103

Query: 195 QMLEKTNEEQNTPLHEAVRLRRVDVVKILIKA 226
             L+  +     P+  A      D+ + L  A
Sbjct: 104 --LDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 70.9 bits (175), Expect = 5e-15
 Identities = 29/150 (19%), Positives = 55/150 (36%), Gaps = 22/150 (14%)

Query: 153 ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAV 212
              H+      +S+  L  A A G  E V ++L+              N     P+   +
Sbjct: 3   PGIHM---LGGSSDAGLATAAARGQVETVRQLLEAGAD------PNALNRFGRRPIQVMM 53

Query: 213 RLRRVDVVKILIK--ADPHVPYSANRNSET-PLYMAVANGSAEIVAEILQNCPESAARQM 269
                 V ++L+   A+P+    A+  + T P++ A   G  + +  + +      AR  
Sbjct: 54  M-GSAQVAELLLLHGAEPNC---ADPATLTRPVHDAAREGFLDTLVVLHRA----GAR-- 103

Query: 270 LEKTNEEQNTPLHEAVRLRSVDVAKILIEA 299
           L+  +     P+  A      D+A+ L  A
Sbjct: 104 LDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 67.5 bits (166), Expect = 9e-14
 Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 17/146 (11%)

Query: 226 ADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAV 285
              H+      +S+  L  A A G  E V ++L+     A        N     P+   +
Sbjct: 3   PGIHM---LGGSSDAGLATAAARGQVETVRQLLEA---GAD---PNALNRFGRRPIQVMM 53

Query: 286 RLRSVDVAKILIE--ADPHVPYSANRNSET-PLYMAAANGSVKIVAKILQKCPSPAHEGP 342
              S  VA++L+   A+P+    A+  + T P++ AA  G +  +  + +          
Sbjct: 54  M-GSAQVAELLLLHGAEPNC---ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDA 109

Query: 343 DGKTALHAAVYTYPTDILERVLIVRG 368
            G+  +  A      DI    L    
Sbjct: 110 WGRLPVDLAEEQGHRDIAR-YLHAAT 134

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 60.9 bits (149), Expect = 1e-11
 Identities = 19/113 (16%), Positives = 34/113 (30%), Gaps = 21/113 (18%)

Query: 77  QANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLH 136
             N  G  P+ +    G   + E L+            G E                P+H
Sbjct: 40  ALNRFGRRPIQVMM-MGSAQVAELLL----------LHGAEPNCA-----DPATLTRPVH 83

Query: 137 EAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQN 187
           +A R   +D + +L +  A   V    +      + +A   G  +I   +   
Sbjct: 84  DAAREGFLDTLVVLHRAGARLDV---CDAWGRLPVDLAEEQGHRDIARYLHAA 133

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 83.2 bits (207), Expect = 2e-19
 Identities = 45/138 (32%), Positives = 74/138 (53%), Gaps = 31/138 (22%)

Query: 205 NTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIV-------A 255
            TPLH A R   ++VVK+L++  AD +     ++N  TPL++A  NG  E+V       A
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNA---KDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 256 EILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSET 313
           ++                ++   TPLH A R   ++V K+L+E  AD +   + ++N  T
Sbjct: 60  DV-------------NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRT 103

Query: 314 PLYMAAANGSVKIVAKIL 331
           PL++AA NG +++V K+L
Sbjct: 104 PLHLAARNGHLEVV-KLL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 80.5 bits (200), Expect = 2e-18
 Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 45/156 (28%)

Query: 82  GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERG--VESAARQILKMTNEEQNTPLHEAV 139
           G +PLHLAA+ GH  +V+ L+          E G  V +         ++   TPLH A 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLL----------EAGADVNAK--------DKNGRTPLHLAA 43

Query: 140 RLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIV-------AEILQNCPQ 190
           R   ++VVK+L++  AD +     ++N  T L++A  NG  E+V       A++      
Sbjct: 44  RNGHLEVVKLLLEAGADVNA---KDKNGRTPLHLAARNGHLEVVKLLLEAGADV------ 94

Query: 191 SAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKA 226
                     ++   TPLH A R   ++VVK+L++A
Sbjct: 95  -------NAKDKNGRTPLHLAARNGHLEVVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 71.6 bits (177), Expect = 2e-15
 Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 45/152 (29%)

Query: 164 NSETLLYMAVANGSAEIV-------AEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRR 216
           N  T L++A  NG  E+V       A++                ++   TPLH A R   
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADV-------------NAKDKNGRTPLHLAARNGH 47

Query: 217 VDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIV-------AEILQNCPESAAR 267
           ++VVK+L++  AD +     ++N  TPL++A  NG  E+V       A++          
Sbjct: 48  LEVVKLLLEAGADVNA---KDKNGRTPLHLAARNGHLEVVKLLLEAGADV---------- 94

Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEA 299
                 ++   TPLH A R   ++V K+L+EA
Sbjct: 95  ---NAKDKNGRTPLHLAARNGHLEVVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 68.9 bits (170), Expect = 2e-14
 Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 40/148 (27%)

Query: 237 NSETPLYMAVANGSAEIV-------AEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRS 289
           N  TPL++A  NG  E+V       A++                ++   TPLH A R   
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADV-------------NAKDKNGRTPLHLAARNGH 47

Query: 290 VDVAKILIE--ADPHVPYSANRNSETPLYMAAANGSVKIV-------AKILQKCPSPAHE 340
           ++V K+L+E  AD +     ++N  TPL++AA NG +++V       A +  K       
Sbjct: 48  LEVVKLLLEAGADVNA---KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK------- 97

Query: 341 GPDGKTALHAAVYTYPTDILERVLIVRG 368
             +G+T LH A      ++++ +L+  G
Sbjct: 98  DKNGRTPLHLAARNGHLEVVK-LLLEAG 124

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 65.8 bits (162), Expect = 3e-13
 Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 25/112 (22%)

Query: 79  NAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPL 135
           NAK   G +PLHLAA+ GH  +V+ L+          E G +      +   ++   TPL
Sbjct: 29  NAKDKNGRTPLHLAARNGHLEVVKLLL----------EAGAD------VNAKDKNGRTPL 72

Query: 136 HEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEIL 185
           H A R   ++VVK+L++  AD +   + ++N  T L++A  NG  E+V ++L
Sbjct: 73  HLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVV-KLL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 52.0 bits (126), Expect = 2e-08
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 23/80 (28%)

Query: 79  NAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERG--VESAARQILKMTNEEQNT 133
           NAK   G +PLHLAA+ GH  +V+ L+          E G  V +         ++   T
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLL----------EAGADVNAK--------DKNGRT 103

Query: 134 PLHEAVRLRSVDVVKILIKA 153
           PLH A R   ++VVK+L++A
Sbjct: 104 PLHLAARNGHLEVVKLLLEA 123

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 82.8 bits (206), Expect = 4e-19
 Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 31/138 (22%)

Query: 205 NTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIV-------A 255
              L EA R  + D V+IL+   AD +   + +    TPLY+A A+G  EIV       A
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVN---AKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71

Query: 256 EILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSET 313
           ++                +    TPLH A  +  +++A++L++  AD +   + ++  +T
Sbjct: 72  DV-------------NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN---AQDKFGKT 115

Query: 314 PLYMAAANGSVKIVAKIL 331
              ++  NG+  +  +IL
Sbjct: 116 AFDISIGNGNEDLA-EIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 79.4 bits (197), Expect = 7e-18
 Identities = 32/182 (17%), Positives = 64/182 (35%), Gaps = 62/182 (34%)

Query: 79  NAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEA 138
            +     L  AA+ G    V  L+            G +  A+      +E   TPL+ A
Sbjct: 11  GSDLGKKLLEAARAGQDDEVRILM----------ANGADVNAK------DEYGLTPLYLA 54

Query: 139 VRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLE 198
                +++V++L+         A+ N                                  
Sbjct: 55  TAHGHLEIVEVLL------KNGADVN---------------------------------A 75

Query: 199 KTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIVAE 256
                  TPLH A  +  +++ ++L+K  AD +   + ++  +T   +++ NG+ ++  E
Sbjct: 76  VDAIGF-TPLHLAAFIGHLEIAEVLLKHGADVN---AQDKFGKTAFDISIGNGNEDLA-E 130

Query: 257 IL 258
           IL
Sbjct: 131 IL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 72.8 bits (180), Expect = 1e-15
 Identities = 33/178 (18%), Positives = 59/178 (33%), Gaps = 65/178 (36%)

Query: 132 NTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQS 191
              L EA R    D V+IL+      +  A+ N                           
Sbjct: 15  GKKLLEAARAGQDDEVRILM------ANGADVN--------------------------- 41

Query: 192 AARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANG 249
                  K      TPL+ A     +++V++L+K  AD +     +    TPL++A   G
Sbjct: 42  ------AKDEYGL-TPLYLATAHGHLEIVEVLLKNGADVNA---VDAIGFTPLHLAAFIG 91

Query: 250 SAEIV-------AEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEAD 300
             EI        A++                ++   T    ++   + D+A+IL + +
Sbjct: 92  HLEIAEVLLKHGADV-------------NAQDKFGKTAFDISIGNGNEDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 57.8 bits (141), Expect = 2e-10
 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 20/100 (20%)

Query: 278 NTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETPLYMAAANGSVKIV-------A 328
              L EA R    D  +IL+   AD +   + +    TPLY+A A+G ++IV       A
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVN---AKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71

Query: 329 KILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRG 368
            +             G T LH A +    +I E VL+  G
Sbjct: 72  DVNAV-------DAIGFTPLHLAAFIGHLEIAE-VLLKHG 103

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 39.7 bits (94), Expect = 4e-04
 Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 3/27 (11%)

Query: 79  NAK---GDSPLHLAAKKGHTAIVEFLI 102
           NA+   G +   ++   G+  + E L 
Sbjct: 107 NAQDKFGKTAFDISIGNGNEDLAEILQ 133

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 81.7 bits (203), Expect = 7e-19
 Identities = 29/180 (16%), Positives = 47/180 (26%), Gaps = 65/180 (36%)

Query: 79  NAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERG--VESAARQILKMTNEEQNTPLH 136
            +  D     A K G    V+  +           +G  V          T E    PLH
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYV----------AKGEDVNR--------TLEGGRKPLH 45

Query: 137 EAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQM 196
            A     +++++ L+         A+ N                                
Sbjct: 46  YAADCGQLEILEFLL------LKGADIN-------------------------------- 67

Query: 197 LEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIV 254
               ++   TPL  AV    V  VK+L+   AD  V      +  T            ++
Sbjct: 68  --APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV---KGPDGLTAFEATDNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 80.1 bits (199), Expect = 3e-18
 Identities = 24/127 (18%), Positives = 42/127 (33%), Gaps = 16/127 (12%)

Query: 205 NTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCP 262
           +     A++   +D VK  +    D +           PL+ A   G  EI+  +L    
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGEDVN---RTLEGGRKPLHYAADCGQLEILEFLLLKGA 64

Query: 263 ESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETPLYMAAA 320
           +      +   ++   TPL  AV    V   K+L+   AD  V      +  T       
Sbjct: 65  D------INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV---KGPDGLTAFEATDN 115

Query: 321 NGSVKIV 327
                ++
Sbjct: 116 QAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 72.0 bits (178), Expect = 2e-15
 Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 11/129 (8%)

Query: 235 NRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAK 294
               +     A+ NG  + V + +    +      + +T E    PLH A     +++ +
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKGED------VNRTLEGGRKPLHYAADCGQLEILE 57

Query: 295 ILIE--ADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAV 352
            L+   AD +     +++  TPL  A   G V  V  +L K      +GPDG TA  A  
Sbjct: 58  FLLLKGADINA---PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114

Query: 353 YTYPTDILE 361
                 +L+
Sbjct: 115 NQAIKALLQ 123

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 78.6 bits (194), Expect = 4e-17
 Identities = 25/192 (13%), Positives = 59/192 (30%), Gaps = 38/192 (19%)

Query: 133 TPLHEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQ 190
             +  A  L + +    L +   +   S   +     +LY  + N + E   +I      
Sbjct: 8   RTVSAAAMLGTYEDFLELFEKGYEDKESVLKS----NILYDVLRNNNDEARYKI------ 57

Query: 191 SAARQMLEK------TNEEQNTPLHEAVRLRRVDV------VKILIK--ADPHVPYSANR 236
             +  ++ K        +E  T      +    D+       KI ++  AD        +
Sbjct: 58  --SMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITAL---YK 112

Query: 237 NSETPLYMAVANGSAEIVAEILQN---CPESAARQMLEKTNEEQNTPLHEAVRLRSVDVA 293
             +  ++  + N   +    I        +S  +  L   ++   T L    R +     
Sbjct: 113 PYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ--LLIKDKWGLTALEFVKRCQKPIAL 170

Query: 294 KILIE--ADPHV 303
           K++ +     ++
Sbjct: 171 KMMEDYIKKYNL 182

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 77.0 bits (190), Expect = 1e-16
 Identities = 27/203 (13%), Positives = 57/203 (28%), Gaps = 52/203 (25%)

Query: 78  ANAKGD-SPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLH 136
           +NA  +   +  AA  G       L           E+G E          +  ++  L+
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLEL----------FEKGYEDKE-------SVLKSNILY 43

Query: 137 EAVRLRS----VDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQ 190
           + +R  +      +   LI   AD        +   TL +     G  +I          
Sbjct: 44  DVLRNNNDEARYKISMFLINKGADIKS---RTKEGTTLFFPLFQGGGNDITGTT------ 94

Query: 191 SAARQMLEK------TNEEQNTPLHEAVRLRRVD------VVKILIK---ADPHVPYSAN 235
              +  LEK        +     + + +    VD      + K++         +    +
Sbjct: 95  ELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI---KD 151

Query: 236 RNSETPLYMAVANGSAEIVAEIL 258
           +   T L           + +++
Sbjct: 152 KWGLTALEFVKRCQKPIAL-KMM 173

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 75.5 bits (186), Expect = 5e-16
 Identities = 25/184 (13%), Positives = 49/184 (26%), Gaps = 35/184 (19%)

Query: 206 TPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESA 265
             +  A  L   +    L +         +      LY  + N + E   +I        
Sbjct: 8   RTVSAAAMLGTYEDFLELFEK--GYEDKESVLKSNILYDVLRNNNDEARYKI-------- 57

Query: 266 ARQMLEK------TNEEQNTPLHEAVR------LRSVDVAKILIE--ADPHVPYSANRNS 311
           +  ++ K        +E  T      +        + ++ KI +E  AD        +  
Sbjct: 58  SMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITAL---YKPY 114

Query: 312 ETPLYMAAANGSVKIVAKILQKCPSPAHEGPD-------GKTALHAAVYTYPTDILERVL 364
           +  ++    N  V     I       +  G         G TAL           L+ ++
Sbjct: 115 KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALK-MM 173

Query: 365 IVRG 368
               
Sbjct: 174 EDYI 177

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 72.8 bits (179), Expect = 5e-15
 Identities = 25/195 (12%), Positives = 55/195 (28%), Gaps = 41/195 (21%)

Query: 160 SANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLR---- 215
           S   +    +  A   G+ E   E+ +           +K +  ++  L++ +R      
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEK----GYE---DKESVLKSNILYDVLRNNNDEA 53

Query: 216 RVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEK- 272
           R  +   LI   AD        +   T  +     G  +I             +  LEK 
Sbjct: 54  RYKISMFLINKGADIKS---RTKEGTTLFFPLFQGGGNDITGTT------ELCKIFLEKG 104

Query: 273 -----TNEEQNTPLHEAVRLRSVDVAK-------ILIE--ADPHVPYSANRNSETPLYMA 318
                  +     + + +    VD  +       I  +      +    ++   T L   
Sbjct: 105 ADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI---KDKWGLTALEFV 161

Query: 319 AANGSVKIVAKILQK 333
                   + K+++ 
Sbjct: 162 KRCQKPIAL-KMMED 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 67.0 bits (164), Expect = 4e-13
 Identities = 22/160 (13%), Positives = 50/160 (31%), Gaps = 34/160 (21%)

Query: 84  SPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVR--- 140
             L     +    I  FLI           +G +      +K   +E  T      +   
Sbjct: 44  DVLRNNNDEARYKISMFLI----------NKGAD------IKSRTKEGTTLFFPLFQGGG 87

Query: 141 ---LRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQN---CPQSA 192
                + ++ KI ++  AD        +  + +++  + N   +    I        QS 
Sbjct: 88  NDITGTTELCKIFLEKGADITA---LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG 144

Query: 193 ARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHV 230
            +  L   ++   T L    R ++   +K++       ++
Sbjct: 145 LQ--LLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNL 182

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 22/147 (14%), Positives = 46/147 (31%), Gaps = 22/147 (14%)

Query: 233 SANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRS--- 289
           S   +    +  A   G+ E   E+ +   E       +K +  ++  L++ +R  +   
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEKGYE-------DKESVLKSNILYDVLRNNNDEA 53

Query: 290 -VDVAKILIE--ADPHVPYSANRNSETPLYMAAANGSVKIVAKI------LQKCPSPAHE 340
              ++  LI   AD        +   T  +     G   I          L+K       
Sbjct: 54  RYKISMFLINKGADIKS---RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITAL 110

Query: 341 GPDGKTALHAAVYTYPTDILERVLIVR 367
               K  +   ++ Y  D  E + + +
Sbjct: 111 YKPYKIVVFKNIFNYFVDENEMIPLYK 137

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 15/104 (14%), Positives = 28/104 (26%), Gaps = 14/104 (13%)

Query: 5   LYEAAAKG--DIEPFREIARDELES---I-VTDVMKNTVLHVNIMRSHLTLQTEEGEISS 58
            +     G  DI    E+ +  LE    I         V+  NI    +          +
Sbjct: 79  FFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVD--------EN 130

Query: 59  ESTEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLI 102
           E     + I       L   +  G + L    +      ++ + 
Sbjct: 131 EMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMME 174

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 79.3 bits (195), Expect = 3e-16
 Identities = 43/275 (15%), Positives = 85/275 (30%), Gaps = 74/275 (26%)

Query: 62  EFVEQILDLCPSLLFQANAKGD----SPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVE 117
             ++++ D  P+     N   D    +PLH      +  +V+ L+          + G  
Sbjct: 107 SLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLV----------KHGSN 156

Query: 118 SAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGS 177
                     +    + L +AV+                     + N+          G+
Sbjct: 157 RLYG------DNMGESCLVKAVK---------------------SVNNYDS-------GT 182

Query: 178 AEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRV-----------DVVKILIKA 226
            E + + L  C        L   +    T LH  +    +           D++   I  
Sbjct: 183 FEALLDYLYPC--------LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVK 234

Query: 227 DPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVR 286
             + P  +  N +            + + E L      A   ML   +   +T L+ A R
Sbjct: 235 KQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN--MLNAQDSNGDTCLNIAAR 292

Query: 287 LRSVDVAKILIE--ADPHVPYSANRNSETPLYMAA 319
           L ++ +   L++  ADP +    N++   P+   A
Sbjct: 293 LGNISIVDALLDYGADPFIA---NKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 77.0 bits (189), Expect = 1e-15
 Identities = 47/324 (14%), Positives = 103/324 (31%), Gaps = 53/324 (16%)

Query: 40  VNIMRSHLTLQTEEGEISSESTEFVEQIL----DLCPSLLFQANAKGDSPLHLAAKKGHT 95
           + IM++  +    + E   +   F++++L       P+ L   ++  +S    + ++   
Sbjct: 43  LKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQH 102

Query: 96  AIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIK--A 153
              + L+   N           +    +    +E  NTPLH    + ++++VK L+K  +
Sbjct: 103 VSFDSLLQEVNDAFP-------NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGS 155

Query: 154 DPHVSYSANRNSETLLYMAVANG---SAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHE 210
           +       +   E+ L  AV +     +     +L           L   +    T LH 
Sbjct: 156 NRLY---GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC-----LILEDSMNRTILHH 207

Query: 211 AVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQML 270
            +                         S      A A    +I+   +           +
Sbjct: 208 III-----------------------TSGMTGCSAAAKYYLDILMGWIVKKQNRP----I 240

Query: 271 EKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPY--SANRNSETPLYMAAANGSVKIVA 328
           +    E+ +  ++    R   + + L           + + N +T L +AA  G++ IV 
Sbjct: 241 QSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVD 300

Query: 329 KILQKCPSPAHEGPDGKTALHAAV 352
            +L     P      G   +    
Sbjct: 301 ALLDYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 23/138 (16%), Positives = 55/138 (39%), Gaps = 21/138 (15%)

Query: 5   LYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFV 64
           L+       +      A+  L+ ++  ++K    +  I       +++  + + E  + +
Sbjct: 205 LHHIIITSGMTGCSAAAKYYLDILMGWIVKK--QNRPIQSGTNEKESKPNDKNGERKDSI 262

Query: 65  EQILDLCPSLLFQANAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAAR 121
            + LDL   +    NA+   GD+ L++AA+ G+ +IV+ L+          + G +    
Sbjct: 263 LENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALL----------DYGAD---- 308

Query: 122 QILKMTNEEQNTPLHEAV 139
               + N+    P+    
Sbjct: 309 --PFIANKSGLRPVDFGA 324

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 72.0 bits (178), Expect = 1e-15
 Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 30/127 (23%)

Query: 201 NEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIV---- 254
           +++ NTPLH A +    + VK L+   AD +   + +++  TPL++A  NG AEIV    
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVN---ARSKDGNTPLHLAAKNGHAEIVKLLL 62

Query: 255 ---AEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANR 309
              A++                +++ NTP H A +    ++ K+L    AD +   + + 
Sbjct: 63  AKGADV-------------NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN---ARSW 106

Query: 310 NSETPLY 316
            S    +
Sbjct: 107 GSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 68.2 bits (168), Expect = 3e-14
 Identities = 29/132 (21%), Positives = 52/132 (39%), Gaps = 39/132 (29%)

Query: 234 ANRNSETPLYMAVANGSAEIV-------AEILQNCPESAARQMLEKTNEEQNTPLHEAVR 286
            +++  TPL+ A  NG AE V       A++                +++ NTPLH A +
Sbjct: 5   GSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-------------NARSKDGNTPLHLAAK 51

Query: 287 LRSVDVAKILIE--ADPHVPYSANRNSETPLYMAAANGSVKIV-------AKILQKCPSP 337
               ++ K+L+   AD +     +++  TP ++A  NG  +IV       A +  +    
Sbjct: 52  NGHAEIVKLLLAKGADVNA---RSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR---- 104

Query: 338 AHEGPDGKTALH 349
                      H
Sbjct: 105 ---SWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 67.4 bits (166), Expect = 5e-14
 Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 45/144 (31%)

Query: 77  QANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERG--VESAARQILKMTNEEQNTP 134
             +  G++PLH AAK GH   V+ L+           +G  V +         +++ NTP
Sbjct: 4   WGSKDGNTPLHNAAKNGHAEEVKKLL----------SKGADVNAR--------SKDGNTP 45

Query: 135 LHEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIV-------AEIL 185
           LH A +    ++VK+L+   AD +     +++  T  ++A  NG  EIV       A++ 
Sbjct: 46  LHLAAKNGHAEIVKLLLAKGADVNA---RSKDGNTPEHLAKKNGHHEIVKLLDAKGADV- 101

Query: 186 QNCPQSAARQMLEKTNEEQNTPLH 209
                          +   +   H
Sbjct: 102 ------------NARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 67.0 bits (165), Expect = 6e-14
 Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 30/127 (23%)

Query: 128 NEEQNTPLHEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIV---- 181
           +++ NTPLH A +    + VK L+   AD +   + +++  T L++A  NG AEIV    
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVN---ARSKDGNTPLHLAAKNGHAEIVKLLL 62

Query: 182 ---AEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANR 236
              A++                +++ NTP H A +    ++VK+L    AD +   + + 
Sbjct: 63  AKGADV-------------NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN---ARSW 106

Query: 237 NSETPLY 243
            S    +
Sbjct: 107 GSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 57.0 bits (139), Expect = 2e-10
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 20/104 (19%)

Query: 274 NEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETPLYMAAANGSVKIV---- 327
           +++ NTPLH A +    +  K L+   AD +   + +++  TPL++AA NG  +IV    
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVN---ARSKDGNTPLHLAAKNGHAEIVKLLL 62

Query: 328 ---AKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRG 368
              A +  +         DG T  H A      +I++ +L  +G
Sbjct: 63  AKGADVNAR-------SKDGNTPEHLAKKNGHHEIVK-LLDAKG 98

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 65.8 bits (162), Expect = 1e-13
 Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 22/106 (20%)

Query: 82  GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
           G +PLHLAA+ GH  +V+ L+          E G +      +   ++   TPLH A R 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLL----------EAGAD------VNAKDKNGRTPLHLAARN 45

Query: 142 RSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEIL 185
             ++VVK+L++  AD +     ++N  T L++A  NG  E+V ++L
Sbjct: 46  GHLEVVKLLLEAGADVNA---KDKNGRTPLHLAARNGHLEVV-KLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 63.1 bits (155), Expect = 1e-12
 Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 25/104 (24%)

Query: 205 NTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIV-------A 255
            TPLH A R   ++VVK+L++  AD +     ++N  TPL++A  NG  E+V       A
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNA---KDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 256 EILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEA 299
           ++                ++   TPLH A R   ++V K+L+EA
Sbjct: 60  DV-------------NAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 61.6 bits (151), Expect = 3e-12
 Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 26/104 (25%)

Query: 237 NSETPLYMAVANGSAEIV-------AEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRS 289
           N  TPL++A  NG  E+V       A++                ++   TPLH A R   
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADV-------------NAKDKNGRTPLHLAARNGH 47

Query: 290 VDVAKILIE--ADPHVPYSANRNSETPLYMAAANGSVKIVAKIL 331
           ++V K+L+E  AD +     ++N  TPL++AA NG +++V K+L
Sbjct: 48  LEVVKLLLEAGADVNA---KDKNGRTPLHLAARNGHLEVV-KLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 57.4 bits (140), Expect = 1e-10
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 26/104 (25%)

Query: 164 NSETLLYMAVANGSAEIV-------AEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRR 216
           N  T L++A  NG  E+V       A++                ++   TPLH A R   
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADV-------------NAKDKNGRTPLHLAARNGH 47

Query: 217 VDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIVAEIL 258
           ++VVK+L++  AD +     ++N  TPL++A  NG  E+V ++L
Sbjct: 48  LEVVKLLLEAGADVNA---KDKNGRTPLHLAARNGHLEVV-KLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 53.9 bits (131), Expect = 2e-09
 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 5/78 (6%)

Query: 278 NTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCP 335
            TPLH A R   ++V K+L+E  AD +     ++N  TPL++AA NG +++V  +L+   
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNA---KDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 336 SPAHEGPDGKTALHAAVY 353
               +  +G+T LH A  
Sbjct: 60  DVNAKDKNGRTPLHLAAR 77

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 53.1 bits (129), Expect = 3e-09
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 23/80 (28%)

Query: 79  NAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERG--VESAARQILKMTNEEQNT 133
           NAK   G +PLHLAA+ GH  +V+ L+          E G  V +         ++   T
Sbjct: 29  NAKDKNGRTPLHLAARNGHLEVVKLLL----------EAGADVNAK--------DKNGRT 70

Query: 134 PLHEAVRLRSVDVVKILIKA 153
           PLH A R   ++VVK+L++A
Sbjct: 71  PLHLAARNGHLEVVKLLLEA 90

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 65.7 bits (161), Expect = 2e-13
 Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 22/110 (20%)

Query: 79  NAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEA 138
            +     L  AA+ G    V  L+            G +      +   ++  +TPLH A
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRILM----------ANGAD------VAAKDKNGSTPLHLA 64

Query: 139 VRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ 186
            R   ++VVK+L++  AD     + ++  +T   +++ NG+ ++  EILQ
Sbjct: 65  ARNGHLEVVKLLLEAGADV---XAQDKFGKTAFDISIDNGNEDLA-EILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 62.2 bits (152), Expect = 3e-12
 Identities = 34/173 (19%), Positives = 59/173 (34%), Gaps = 65/173 (37%)

Query: 89  AAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVK 148
            +   H      L+           RG              +    L EA R    D V+
Sbjct: 1   GSSHHHHHHSSGLV----------PRGSH---------MGSDLGKKLLEAARAGQDDEVR 41

Query: 149 ILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPL 208
           IL+                       NG A++                    ++  +TPL
Sbjct: 42  ILMA----------------------NG-ADV-----------------AAKDKNGSTPL 61

Query: 209 HEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIVAEILQ 259
           H A R   ++VVK+L++  AD     + ++  +T   +++ NG+ ++  EILQ
Sbjct: 62  HLAARNGHLEVVKLLLEAGAD---VXAQDKFGKTAFDISIDNGNEDLA-EILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 58.4 bits (142), Expect = 7e-11
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 20/122 (16%)

Query: 245 AVANGSAEIVAEILQNCPESAARQMLEK---TNEEQNTPLHEAVRLRSVDVAKILIE--A 299
             ++         L           + +      +    L EA R    D  +IL+   A
Sbjct: 1   GSSHHHHHHS-SGL-----------VPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGA 48

Query: 300 DPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDI 359
           D     + ++N  TPL++AA NG +++V  +L+       +   GKTA   ++     D+
Sbjct: 49  DVA---AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDL 105

Query: 360 LE 361
            E
Sbjct: 106 AE 107

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 55.7 bits (135), Expect = 7e-10
 Identities = 26/130 (20%), Positives = 51/130 (39%), Gaps = 26/130 (20%)

Query: 172 AVANGSAEIVAEILQNCPQSAARQMLEK---TNEEQNTPLHEAVRLRRVDVVKILIK--A 226
             ++         L           + +      +    L EA R  + D V+IL+   A
Sbjct: 1   GSSHHHHHHS-SGL-----------VPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGA 48

Query: 227 DPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVR 286
           D     + ++N  TPL++A  NG  E+V  +L+   +      +   ++   T    ++ 
Sbjct: 49  DVA---AKDKNGSTPLHLAARNGHLEVVKLLLEAGAD------VXAQDKFGKTAFDISID 99

Query: 287 LRSVDVAKIL 296
             + D+A+IL
Sbjct: 100 NGNEDLAEIL 109

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 3e-11
 Identities = 55/417 (13%), Positives = 116/417 (27%), Gaps = 129/417 (30%)

Query: 22  RDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAK 81
           R +   +   +   T  H+++    +TL T +     E    + + LD  P  L      
Sbjct: 273 RFK--QVTDFLSAATTTHISLDHHSMTL-TPD-----EVKSLLLKYLDCRPQDL-PREVL 323

Query: 82  GDSPLHLAAKKGHTAIVEFLIVFANR----QPIDLERGVESAARQILKMTNEEQNTPLHE 137
             +P  L+       I E +          + ++ ++        I++ +        + 
Sbjct: 324 TTNPRRLSI------IAESIRDGLATWDNWKHVNCDK-----LTTIIESSLNVLEPAEYR 372

Query: 138 AVRLRSVDV----VKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAA 193
                 + V      I                  LL +   +     V  ++        
Sbjct: 373 K-MFDRLSVFPPSAHI---------------PTILLSLIWFDVIKSDVMVVVNKL---HK 413

Query: 194 RQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEI 253
             ++EK  +E    +                                 +Y+         
Sbjct: 414 YSLVEKQPKESTISIPS-------------------------------IYL--------- 433

Query: 254 VAEILQNCPESAA--RQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADP----HVPY-- 305
             E+        A  R +++  N  +     +           I    D     H+ +  
Sbjct: 434 --ELKVKLENEYALHRSIVDHYNIPKTFDSDD----------LIPPYLDQYFYSHIGHHL 481

Query: 306 SANRNSE-----TPLYMAAANGSVK-IVAKILQKCPSPAHEGPDGKTALHAAVY-TYPTD 358
               + E       +++       + +  KI     +    G    T      Y  Y  D
Sbjct: 482 KNIEHPERMTLFRMVFL-----DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536

Query: 359 ---ILERVLIVRGTFKPQEIQELSKNVGRGQYPNGILRV--QTEKEPVDEEALKEMQ 410
                ER++     F P+    + +N+   +Y + +LR+    E E + EEA K++Q
Sbjct: 537 NDPKYERLVNAILDFLPK----IEENLICSKYTD-LLRIALMAEDEAIFEEAHKQVQ 588

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 60.8 bits (147), Expect = 2e-10
 Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 26/163 (15%)

Query: 104 FANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANR 163
           +A ++  D    + S    +             + V L                  + + 
Sbjct: 119 YARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTE-----------KIPLANGHE 167

Query: 164 NSETLLYMAVANGSA---EIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVV 220
             ET L++AV +       IV  ++QN         L+K   + +T LH        + +
Sbjct: 168 PDETALHLAVRSVDRTSLHIVDFLVQNSGN------LDKQTGKGSTALHYCCLTDNAECL 221

Query: 221 KILIK--ADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNC 261
           K+L++  A   +    N + ETPL +A          E+L   
Sbjct: 222 KLLLRGKASIEIA---NESGETPLDIAKRLKHEHCE-ELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 58.9 bits (142), Expect = 9e-10
 Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 25/116 (21%)

Query: 78  ANAKGDSPLHLA---AKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTP 134
            +   ++ LHLA     +    IV+FL+   N   +D                  + +T 
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLV--QNSGNLD--------------KQTGKGSTA 208

Query: 135 LHEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNC 188
           LH      + + +K+L++  A   +   AN + ET L +A          E+L   
Sbjct: 209 LHYCCLTDNAECLKLLLRGKASIEI---ANESGETPLDIAKRLKHEHCE-ELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 10/133 (7%)

Query: 170 YMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVR---LRRVDVVKILIKA 226
             AV       + +   +      +  L   +E   T LH AVR      + +V  L++ 
Sbjct: 135 CEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN 194

Query: 227 DPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVR 286
             ++         T L+      +AE +  +L+       +  +E  NE   TPL  A R
Sbjct: 195 SGNLD-KQTGKGSTALHYCCLTDNAECLKLLLRG------KASIEIANESGETPLDIAKR 247

Query: 287 LRSVDVAKILIEA 299
           L+     ++L +A
Sbjct: 248 LKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 48.5 bits (115), Expect = 2e-06
 Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 16/77 (20%)

Query: 77  QANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLH 136
           +   KG + LH      +   ++ L          L               NE   TPL 
Sbjct: 200 KQTGKGSTALHYCCLTDNAECLKLL----------LRGKASIEI------ANESGETPLD 243

Query: 137 EAVRLRSVDVVKILIKA 153
            A RL+     ++L +A
Sbjct: 244 IAKRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 21/123 (17%), Positives = 40/123 (32%), Gaps = 4/123 (3%)

Query: 243 YMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVR---LRSVDVAKILIEA 299
             AV       + +   +  +   +  L   +E   T LH AVR     S+ +   L++ 
Sbjct: 135 CEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN 194

Query: 300 DPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDI 359
             ++         T L+      + + +  +L+   S       G+T L  A        
Sbjct: 195 SGNLD-KQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHC 253

Query: 360 LER 362
            E 
Sbjct: 254 EEL 256

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 59.6 bits (144), Expect = 6e-10
 Identities = 31/123 (25%), Positives = 44/123 (35%), Gaps = 25/123 (20%)

Query: 71  CPSLLFQANAKGDSPLHLA---AKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMT 127
            P     A A  +  LHLA   A +    +V+F+I   N   +D                
Sbjct: 179 QPLPGPDAQAPEELVLHLAVKVANQASLPLVDFII--QNGGHLD--------------AK 222

Query: 128 NEEQNTPLHEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEIL 185
             + NT LH A      D +K+L+K  A        N   ET L +A      E   E+L
Sbjct: 223 AADGNTALHYAALYNQPDCLKLLLKGRALVGT---VNEAGETALDIARKKHHKECE-ELL 278

Query: 186 QNC 188
           +  
Sbjct: 279 EQA 281

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 58.5 bits (141), Expect = 1e-09
 Identities = 30/112 (26%), Positives = 44/112 (39%), Gaps = 15/112 (13%)

Query: 155 PHVSYSANRNSETLLYMAVANG---SAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEA 211
           P     A    E +L++AV      S  +V  I+QN         L+    + NT LH A
Sbjct: 180 PLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH------LDAKAADGNTALHYA 233

Query: 212 VRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNC 261
               + D +K+L+K  A        N   ET L +A      E   E+L+  
Sbjct: 234 ALYNQPDCLKLLLKGRALVGT---VNEAGETALDIARKKHHKECE-ELLEQA 281

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 50.0 bits (119), Expect = 8e-07
 Identities = 29/153 (18%), Positives = 54/153 (35%), Gaps = 17/153 (11%)

Query: 170 YMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRL---RRVDVVKILIKA 226
           + A+ N     V E   N                +   LH AV++     + +V  +I+ 
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215

Query: 227 DPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVR 286
             H+      +  T L+ A      + +  +L+       R ++   NE   T L  A +
Sbjct: 216 GGHLDAK-AADGNTALHYAALYNQPDCLKLLLKG------RALVGTVNEAGETALDIARK 268

Query: 287 LRSVDVAKILIEADP-------HVPYSANRNSE 312
               +  ++L +A         HV YS   ++E
Sbjct: 269 KHHKECEELLEQAQAGTFAFPLHVDYSWVISTE 301

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 23/97 (23%)

Query: 77  QANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLH 136
              A G++ LH AA       ++ L          L+      A       NE   T L 
Sbjct: 221 AKAADGNTALHYAALYNQPDCLKLL----------LKGR----ALV--GTVNEAGETALD 264

Query: 137 EAVRLRSVDVVKILIKADP-------HVSYSANRNSE 166
            A +    +  ++L +A         HV YS   ++E
Sbjct: 265 IARKKHHKECEELLEQAQAGTFAFPLHVDYSWVISTE 301

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 44.2 bits (104), Expect = 5e-05
 Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 4/123 (3%)

Query: 243 YMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRL---RSVDVAKILIEA 299
           + A+ N     V E   N  +             +   LH AV++    S+ +   +I+ 
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215

Query: 300 DPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDI 359
             H+      +  T L+ AA       +  +L+           G+TAL  A   +  + 
Sbjct: 216 GGHLDAK-AADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKEC 274

Query: 360 LER 362
            E 
Sbjct: 275 EEL 277

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 58.3 bits (140), Expect = 2e-09
 Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 12/184 (6%)

Query: 80  AKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAV 139
            K          +G       +    + +P       +         +          + 
Sbjct: 149 TKLPEIRGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASG 208

Query: 140 RLRSVDVVKILIKADPHVSYS-ANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLE 198
              S+  +   +     V++    +++ T L  A A  S      +LQN         + 
Sbjct: 209 HPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN------VN 262

Query: 199 KTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIVAE 256
           + +     PLH A  L    +  + +K  AD       +     PL +A+   +A+IV  
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFLKRGADLGAR---DSEGRDPLTIAMETANADIVTL 319

Query: 257 ILQN 260
           +   
Sbjct: 320 LRLA 323

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 45.5 bits (107), Expect = 3e-05
 Identities = 28/176 (15%), Positives = 55/176 (31%), Gaps = 6/176 (3%)

Query: 189 PQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVAN 248
           P+   R+        Q     +     R   ++      P     +          +   
Sbjct: 152 PEIRGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSK-PEPPSEDLGSLHPGALLFRASGHP 210

Query: 249 GSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSAN 308
            S   +A+ L       A        ++  TPL +A    S+   + L++   +V   A+
Sbjct: 211 PSLPTMADALA----HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN-QAD 265

Query: 309 RNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVL 364
                PL+ A   G   +    L++         +G+  L  A+ T   DI+  + 
Sbjct: 266 SAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLR 321

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 16/78 (20%)

Query: 77  QANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLH 136
           QA++ G  PLH A   GHT +              L+RG +  AR      + E   PL 
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLF----------LKRGADLGAR------DSEGRDPLT 306

Query: 137 EAVRLRSVDVVKILIKAD 154
            A+   + D+V +L  A 
Sbjct: 307 IAMETANADIVTLLRLAK 324

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 48.4 bits (115), Expect = 5e-06
 Identities = 32/137 (23%), Positives = 49/137 (35%), Gaps = 20/137 (14%)

Query: 208 LHEAVRLRRVDVVKILI--KAD---PHVPYSANRNSETPLYMAVAN---GSAEIVAEILQ 259
           L  A+  R +  V        D   P     A    E  L++AV      S  +V  I+Q
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195

Query: 260 NCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETPLYM 317
           N         L+    + NT LH A      D  K+L++  A        N   ET L +
Sbjct: 196 NG------GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGT---VNEAGETALDI 246

Query: 318 AAANGSVKIVAKILQKC 334
           A      +   ++L++ 
Sbjct: 247 ARKKHHKECE-ELLEQA 262

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	556
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.98
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.98
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.93
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.92
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.91
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.91
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.9
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.89
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.89
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.89
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.88
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.88
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.88
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.87
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.87
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.87
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.86
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.86
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.86
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.85
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.84
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.84
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.84
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.83
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.83
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.82
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.82
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.82
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.81
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.78
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.78
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.78
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.77
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.77
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.77
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.75
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.73
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.66
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.66

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.4e-50  Score=411.59  Aligned_cols=334  Identities=27%  Similarity=0.331  Sum_probs=249.7

Q ss_pred             HHHHHHHhcCCchHHHHhhhhhcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCCC
Q 045083            3 RKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKG   82 (556)
Q Consensus         3 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g   82 (556)
                      ++||.|++.|+.++|++|+++|++++..+..|.||||+|+..|+.           +++++|++.    +..++..+.+|
T Consensus        16 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~-----------~~v~~Ll~~----g~~~~~~~~~g   80 (437)
T 1n11_A           16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHT-----------EVAKYLLQN----KAKVNAKAKDD   80 (437)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCH-----------HHHHHHHHH----TCCSSCCCTTS
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH-----------HHHHHHHhC----CCCCCCCCCCC
Confidence            689999999999999999999999999999999999999999999           999999654    55678889999


Q ss_pred             ChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhh-----------HHHHHHH------hhhccCCCcHhHHHHhcCCHH
Q 045083           83 DSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVE-----------SAARQIL------KMTNEEQNTPLHEAVRLRSVD  145 (556)
Q Consensus        83 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~-----------~~~~~~l------~~~~~~g~t~Lh~A~~~g~~~  145 (556)
                      .||||+|+..|+.++|++|+++|++.+.....+..           ...+.++      ...+..|.||||+|+..|+.+
T Consensus        81 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~  160 (437)
T 1n11_A           81 QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR  160 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHH
Confidence            99999999999999999999998875332111111           1112222      123455667777777777777


Q ss_pred             HHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHh
Q 045083          146 VVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK  225 (556)
Q Consensus       146 ~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  225 (556)
                      ++++|++++.+++ ..+..|.||||+|+..|+.+++++|++++.+...      .+..|.||||.|+..|+.+++++|++
T Consensus       161 ~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~~~~~~~~~~~Ll~  233 (437)
T 1n11_A          161 VAELLLERDAHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS------PAWNGYTPLHIAAKQNQVEVARSLLQ  233 (437)
T ss_dssp             HHHHHHHTTCCTT-CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCC------CCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC------cCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            7777777766665 5566677777777777777777777776654322      45667777777777777777777777


Q ss_pred             cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCc
Q 045083          226 ADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPY  305 (556)
Q Consensus       226 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~  305 (556)
                      .+.+. +..+..|.||||+|+..|+.+++++|++.+.+      .+..+..|.||||+|+..|+.+++++|+++|.+++ 
T Consensus       234 ~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-  305 (437)
T 1n11_A          234 YGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLSKQAN------GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD-  305 (437)
T ss_dssp             TTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT-
T ss_pred             cCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCC-
Confidence            77663 56667777777777777777777777777653      34566777777777777777777777777777765 


Q ss_pred             cccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHHHHHHh
Q 045083          306 SANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIV  366 (556)
Q Consensus       306 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~~~~~  366 (556)
                      .+|..|+||||+|+.+|+.+++++|+++|++++.+|..|+||||+|+..++.++++.++..
T Consensus       306 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  366 (437)
T 1n11_A          306 ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN  366 (437)
T ss_dssp             CCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHC
Confidence            5677777888888877777778877777777777777778888888777777777777664

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.3e-50  Score=409.63  Aligned_cols=297  Identities=27%  Similarity=0.355  Sum_probs=199.7

Q ss_pred             hhcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCCCChHHHHHHHhCcHHHHHHHH
Q 045083           23 DELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLI  102 (556)
Q Consensus        23 ~g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll  102 (556)
                      .|++++..+..|.||||+|+..|+.           +++++|++   . +..++..+..|.||||+|+..|+.+++++|+
T Consensus         3 ~g~~~~~~~~~g~t~L~~Aa~~g~~-----------~~v~~Ll~---~-g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll   67 (437)
T 1n11_A            3 PGISGGGGGESGLTPLHVASFMGHL-----------PIVKNLLQ---R-GASPNVSNVKVETPLHMAARAGHTEVAKYLL   67 (437)
T ss_dssp             ------------CCHHHHHHHHTCH-----------HHHHHHHH---T-TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH
T ss_pred             CCCCccccCCCCCCHHHHHHHCCCH-----------HHHHHHHH---c-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            5788888899999999999999999           99999954   3 5567788999999999999999999999999


Q ss_pred             HHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHH
Q 045083          103 VFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVA  182 (556)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~  182 (556)
                      +.+++                ++.++.+|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.++++
T Consensus        68 ~~g~~----------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~g~~~~v~  130 (437)
T 1n11_A           68 QNKAK----------------VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN-LATTAGHTPLHIAAREGHVETVL  130 (437)
T ss_dssp             HHTCC----------------SSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             hCCCC----------------CCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCC-CCCCCCCcHHHHHHHcCCHHHHH
Confidence            99887                34567778888888888888888888888877776 56677778888888888888888


Q ss_pred             HHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q 045083          183 EILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCP  262 (556)
Q Consensus       183 ~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~  262 (556)
                      +|++++.....      .+..|.||||.|+..|+.+++++|++++.+. +..+.+|.||||+|+..|+.+++++|++.+.
T Consensus       131 ~Ll~~~~~~~~------~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  203 (437)
T 1n11_A          131 ALLEKEASQAC------MTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG  203 (437)
T ss_dssp             HHHHTTCCSCC------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTC
T ss_pred             HHHhCCCCCcC------CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence            88777654322      4566667777777777777777777766663 5566666777777777777777777766664


Q ss_pred             hhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q 045083          263 ESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGP  342 (556)
Q Consensus       263 ~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~  342 (556)
                      +      .+..+..|.||||+|+..|+.+++++|++.|.+++ ..+..|.||||+|+..|+.+++++|++++++++..|.
T Consensus       204 ~------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~  276 (437)
T 1n11_A          204 S------PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN-AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK  276 (437)
T ss_dssp             C------SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCT
T ss_pred             C------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCC
Confidence            3      23344455556666555555555555555555543 4455555555555555555555555555555555555


Q ss_pred             CCCcHHHHHHhcCChhHHHHHHH
Q 045083          343 DGKTALHAAVYTYPTDILERVLI  365 (556)
Q Consensus       343 ~g~t~L~~A~~~~~~~~~~~~~~  365 (556)
                      .|.||||+|+..++.++++.++.
T Consensus       277 ~g~t~L~~A~~~~~~~~~~~Ll~  299 (437)
T 1n11_A          277 SGLTPLHLVAQEGHVPVADVLIK  299 (437)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh
Confidence            55555555555555555555544

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2.6e-43  Score=346.60  Aligned_cols=289  Identities=18%  Similarity=0.211  Sum_probs=242.6

Q ss_pred             HHHHHHHhcCCchHHHHhhhhhcccccccC-CCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCC
Q 045083            3 RKLYEAAAKGDIEPFREIARDELESIVTDV-MKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAK   81 (556)
Q Consensus         3 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~-~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   81 (556)
                      ++|+.||+.||+++|++|+++|++++..+. .|+||||+|+..|+.           +++++|++.    +..++..+..
T Consensus        27 t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~-----------~iv~~Ll~~----ga~~~~~~~~   91 (337)
T 4g8k_A           27 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRE-----------DIVELLLRH----GADPVLRKKN   91 (337)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCH-----------HHHHHHHHT----TCCTTCCCTT
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCH-----------HHHHHHHHc----CCchhhhccC
Confidence            579999999999999999999999987764 589999999999999           999999553    5667788999


Q ss_pred             CChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcc--
Q 045083           82 GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSY--  159 (556)
Q Consensus        82 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~--  159 (556)
                      +.+|++.++..++.++++.+++.+.+                ++..|..|.||||+|+..|+.+++++|+++|++++.  
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~  155 (337)
T 4g8k_A           92 GATPFILAAIAGSVKLLKLFLSKGAD----------------VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR  155 (337)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTTTCC----------------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCchhHHHHhcccchhhHHhhhccch----------------hhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhh
Confidence            99999999999999999999988776                566788999999999999999999999998877652  


Q ss_pred             -------cccCCCCcHHHHHHHcCCHHHHHHHHHh-CCChhHHHHhhhcCCCCCcHhHHHHhcCC----HHHHHHHHhcC
Q 045083          160 -------SANRNSETLLYMAVANGSAEIVAEILQN-CPQSAARQMLEKTNEEQNTPLHEAVRLRR----VDVVKILIKAD  227 (556)
Q Consensus       160 -------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~~  227 (556)
                             ..+..|.||||+|+..|+.+++++|+++ +.+.      +..+..|.|++|.++..+.    .+++++|++++
T Consensus       156 ~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~------n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~g  229 (337)
T 4g8k_A          156 KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV------NACDNMGRNALIHALLSSDDSDVEAITHLLLDHG  229 (337)
T ss_dssp             CCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT------TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTT
T ss_pred             ccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCc------CccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCC
Confidence                   2345688999999999999999999975 4442      2378889999988776543    46888999999


Q ss_pred             CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccc
Q 045083          228 PHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSA  307 (556)
Q Consensus       228 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  307 (556)
                      .++ +.+|.+|+||||+|+..|+.++++.|++....     .++.+|..|+||||+|++.|+.++|++|+++|++++   
T Consensus       230 ad~-n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~-----~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n---  300 (337)
T 4g8k_A          230 ADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHI-----EINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD---  300 (337)
T ss_dssp             CCT-TCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTC-----CTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST---
T ss_pred             CCC-CCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCC-----cccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC---
Confidence            885 78889999999999999999999999976422     357888999999999999999999999999998763   


Q ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q 045083          308 NRNSETPLYMAAANGSVKIVAKILQKCPSPAHE  340 (556)
Q Consensus       308 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~  340 (556)
                         ..+|||+|+++|+.++|++||++|+++|..
T Consensus       301 ---~~~~L~~A~~~~~~~iv~~Ll~~GA~~d~~  330 (337)
T 4g8k_A          301 ---CGDLVMTARRNYDHSLVKVLLSHGAKEDFH  330 (337)
T ss_dssp             ---TCCHHHHHHHTTCHHHHHHHHHTTCCC---
T ss_pred             ---CCCHHHHHHHcCCHHHHHHHHHCcCCCCCC
Confidence               457999999999999999999999988754

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.8e-42  Score=342.79  Aligned_cols=292  Identities=23%  Similarity=0.260  Sum_probs=245.1

Q ss_pred             HHHHHHHhcCCchHHHHhhhh-hcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCC
Q 045083            3 RKLYEAAAKGDIEPFREIARD-ELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAK   81 (556)
Q Consensus         3 ~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   81 (556)
                      ++|+.|++.|+.+.+++|+++ +.+++..|..|+||||+|+..|+.           +++++|++   . +..++..|..
T Consensus        26 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~-----------~~v~~Ll~---~-g~~~~~~~~~   90 (351)
T 3utm_A           26 DELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRV-----------RIVQLLLQ---H-GADVHAKDKG   90 (351)
T ss_dssp             HHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCH-----------HHHHHHHH---T-TCCTTCCCTT
T ss_pred             hhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCH-----------HHHHHHHH---c-CCCCCccCCC
Confidence            578888888888888887776 777777778888888888888888           88888844   3 4556777888


Q ss_pred             CChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccc
Q 045083           82 GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSA  161 (556)
Q Consensus        82 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  161 (556)
                      |.||||+|+..|+.+++++|++++.+                ++..|..|.||||+|+..|+.+++++|+++|.++. ..
T Consensus        91 g~t~L~~A~~~g~~~iv~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~  153 (351)
T 3utm_A           91 GLVPLHNACSYGHYEVTELLLKHGAC----------------VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT-LV  153 (351)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCC----------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CC
T ss_pred             CCcHHHHHHHCCCHHHHHHHHHCCCC----------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-cc
Confidence            88888888888888888888888776                45567788888888888888888888888888776 66


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCH
Q 045083          162 NRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETP  241 (556)
Q Consensus       162 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~  241 (556)
                      +..|.+|+++|+..+..+.+++....                  .++..++..++.+.++.++..... ....+..|.||
T Consensus       154 ~~~g~~~l~~a~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~  214 (351)
T 3utm_A          154 NCHGKSAVDMAPTPELRERLTYEFKG------------------HSLLQAAREADLAKVKKTLALEII-NFKQPQSHETA  214 (351)
T ss_dssp             CTTSCCHHHHCSSHHHHHHHHHHHHH------------------HHHHHHHHTTCHHHHHHHTTTCCT-TCCCTTTCCCH
T ss_pred             cCCCCcchHHHhhhhhHHHHHhhhcc------------------cHHHHHHHhccHHHHHHHHHhhcc-cccCCCCCCCH
Confidence            77888888888877777666655432                  246777888889999988887655 35678889999


Q ss_pred             HHHHHHc---CCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHH
Q 045083          242 LYMAVAN---GSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMA  318 (556)
Q Consensus       242 L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A  318 (556)
                      ||+|+..   ++.+++++|++.+.+      ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|+||||+|
T Consensus       215 L~~A~~~~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n-~~d~~g~t~L~~A  287 (351)
T 3utm_A          215 LHCAVASLHPKRKQVAELLLRKGAN------VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMN-ALDSLGQTALHRA  287 (351)
T ss_dssp             HHHHHHCCSTTHHHHHHHHHHTTCC------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHH
T ss_pred             HHHHHHHhCccHHHHHHHHHHcCCC------cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHH
Confidence            9999999   558999999999874      57788999999999999999999999999999986 7899999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q 045083          319 AANGSVKIVAKILQKCPSPAHEGPDGKTALHAAV  352 (556)
Q Consensus       319 ~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~  352 (556)
                      +.+|+.+++++|+++|++++.+|..|+||+|+|.
T Consensus       288 ~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a~  321 (351)
T 3utm_A          288 ALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN  321 (351)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHSC
T ss_pred             HHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhhh
Confidence            9999999999999999999999999999999983

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.4e-41  Score=325.83  Aligned_cols=270  Identities=19%  Similarity=0.255  Sum_probs=156.2

Q ss_pred             CCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchh
Q 045083           33 MKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDL  112 (556)
Q Consensus        33 ~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~  112 (556)
                      +|+|+||.|+..|+.           +++++|   ++.+.......+..|.||||+|+..|+.+++++|+++|.+     
T Consensus         4 ~g~~~L~~A~~~g~~-----------~~v~~L---l~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----   64 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDV-----------DLVQQL---LEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-----   64 (285)
T ss_dssp             HHHHHHHHHHHTTCH-----------HHHHHH---HHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----
T ss_pred             ccchHHHHHHHcCCH-----------HHHHHH---HHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----
Confidence            355666666666666           666666   3333222222255566666666666666666666666554     


Q ss_pred             hhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChh
Q 045083          113 ERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSA  192 (556)
Q Consensus       113 ~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~  192 (556)
                                 ++..|..|.||||+|+..|+.+++++|+++|.++. ..+..|.||||+|+..|+.+++++|++++.+..
T Consensus        65 -----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  132 (285)
T 1wdy_A           65 -----------PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN  132 (285)
T ss_dssp             -----------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             -----------CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcc
Confidence                       23445566666666666666666666666666654 455566666666666666666666666654332


Q ss_pred             HH----HHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhc-CCCCCccCCCCCCCHHHHHHHcCC----HHHHHHHHHcCCh
Q 045083          193 AR----QMLEKTNEEQNTPLHEAVRLRRVDVVKILIKA-DPHVPYSANRNSETPLYMAVANGS----AEIVAEILQNCPE  263 (556)
Q Consensus       193 ~~----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~~~~  263 (556)
                      ..    ......+..|.||||.|+..|+.+++++|++. +.+ .+..|..|.||||+|+..++    .+++++|++.+.+
T Consensus       133 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~  211 (285)
T 1wdy_A          133 LRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD  211 (285)
T ss_dssp             CCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC-TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC
T ss_pred             cccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCC-CCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCC
Confidence            10    00111245566666666666666666666655 433 35556666666666666666    5666666666543


Q ss_pred             hHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHh-cCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCC
Q 045083          264 SAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE-ADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEG  341 (556)
Q Consensus       264 ~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d  341 (556)
                            ++.+|..|+||||+|+..|+.+++++|++ .|.+++ .+|..|+||||+|+++|+.+++++|+++|++++.+|
T Consensus       212 ------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~-~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d  283 (285)
T 1wdy_A          212 ------VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN-DTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             ------SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             ------CCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCcc-ccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCccc
Confidence                  34555566666666666666666666666 455543 555666666666666666666666666666665554

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=3.3e-41  Score=331.50  Aligned_cols=293  Identities=18%  Similarity=0.225  Sum_probs=254.3

Q ss_pred             CCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccC-CCChHHHHHHHhCcHHHHHHHHHHhccCCc
Q 045083           32 VMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANA-KGDSPLHLAAKKGHTAIVEFLIVFANRQPI  110 (556)
Q Consensus        32 ~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~  110 (556)
                      .+|+|+||.|+++|+.           +++++|++.    +.+++.++. .|+||||+||..|+.++|++|+++|++   
T Consensus        23 ~~~~t~L~~Av~~g~~-----------~~V~~LL~~----Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~---   84 (337)
T 4g8k_A           23 VEDNHLLIKAVQNEDV-----------DLVQQLLEG----GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD---   84 (337)
T ss_dssp             HHHHHHHHHHHHTTCH-----------HHHHHHHHH----TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---
T ss_pred             CCCChHHHHHHHcCCH-----------HHHHHHHHC----CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc---
Confidence            4578999999999999           999999553    556666654 599999999999999999999999987   


Q ss_pred             hhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Q 045083          111 DLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQ  190 (556)
Q Consensus       111 ~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~  190 (556)
                                   ++.++..+.++++.++..+...++..+++.+.+++ ..|..|.||||+|+..|+.+++++|++++.+
T Consensus        85 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~  150 (337)
T 4g8k_A           85 -------------PVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGAN  150 (337)
T ss_dssp             -------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             -------------hhhhccCCCchhHHHHhcccchhhHHhhhccchhh-hhccCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence                         45678999999999999999999999999999987 7889999999999999999999999999865


Q ss_pred             hhHH----HHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhc-CCCCCccCCCCCCCHHHHHHHcCC----HHHHHHHHHcC
Q 045083          191 SAAR----QMLEKTNEEQNTPLHEAVRLRRVDVVKILIKA-DPHVPYSANRNSETPLYMAVANGS----AEIVAEILQNC  261 (556)
Q Consensus       191 ~~~~----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~~  261 (556)
                      ....    ......+..|.||||.|+..|+.+++++|+++ +.+ ++..|..|.|+++.++..++    .+++++|++++
T Consensus       151 ~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad-~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~g  229 (337)
T 4g8k_A          151 VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG  229 (337)
T ss_dssp             TTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCC-TTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTT
T ss_pred             cchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCC-cCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCC
Confidence            4211    11223567899999999999999999999975 666 57899999999999876554    46889999999


Q ss_pred             ChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhc-CCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q 045083          262 PESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEA-DPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHE  340 (556)
Q Consensus       262 ~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~  340 (556)
                      .+      ++.+|..|+||||+|+..|+.++++.|++. +.+++ .+|..|+||||+|+++|+.++|++||++|+++|.+
T Consensus       230 ad------~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn-~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~  302 (337)
T 4g8k_A          230 AD------VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN-DTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG  302 (337)
T ss_dssp             CC------TTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTT-CBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC
T ss_pred             CC------CCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCccc-CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence            74      578889999999999999999999999986 56654 88999999999999999999999999999988754


Q ss_pred             CCCCCcHHHHHHhcCChhHHHHHHHhhCC
Q 045083          341 GPDGKTALHAAVYTYPTDILERVLIVRGT  369 (556)
Q Consensus       341 d~~g~t~L~~A~~~~~~~~~~~~~~~~~~  369 (556)
                           +|||+|+..++.++++.++..+..
T Consensus       303 -----~~L~~A~~~~~~~iv~~Ll~~GA~  326 (337)
T 4g8k_A          303 -----DLVMTARRNYDHSLVKVLLSHGAK  326 (337)
T ss_dssp             -----CHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             -----CHHHHHHHcCCHHHHHHHHHCcCC
Confidence                 599999999999999998876543

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-40  Score=319.62  Aligned_cols=263  Identities=21%  Similarity=0.269  Sum_probs=238.1

Q ss_pred             CCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhh-ccCCCcHhHHHHhcCCHHHHHHHHhcCCCCc
Q 045083           80 AKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMT-NEEQNTPLHEAVRLRSVDVVKILIKADPHVS  158 (556)
Q Consensus        80 ~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  158 (556)
                      .+|.||||.|++.|+.+++++|++.+.+.                +.. +..|.||||+|+..|+.+++++|++++.++.
T Consensus         3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~~----------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~   66 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLVQQLLEGGANV----------------NFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV   66 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTCCT----------------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCc----------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence            35789999999999999999999998763                334 7789999999999999999999999999987


Q ss_pred             ccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccC----
Q 045083          159 YSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSA----  234 (556)
Q Consensus       159 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~----  234 (556)
                       ..+..|.||||+|+..|+.+++++|++++.+..      ..+..|.||||.|+..|+.+++++|++.+.+.....    
T Consensus        67 -~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~  139 (285)
T 1wdy_A           67 -LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN------ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE  139 (285)
T ss_dssp             -CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT------CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCH
T ss_pred             -ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHH
Confidence             678899999999999999999999999987643      378899999999999999999999999998863221    


Q ss_pred             -----CCCCCCHHHHHHHcCCHHHHHHHHHc-CChhHHHHHhhhcCCCCCchhHHHHhcCC----HHHHHHHHhcCCCCC
Q 045083          235 -----NRNSETPLYMAVANGSAEIVAEILQN-CPESAARQMLEKTNEEQNTPLHEAVRLRS----VDVAKILIEADPHVP  304 (556)
Q Consensus       235 -----~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~----~~~v~~Ll~~~~~~~  304 (556)
                           +..|.||||+|+..|+.+++++|++. +.+      ++..|..|+||||+|+..++    .+++++|++.|++++
T Consensus       140 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~------~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~  213 (285)
T 1wdy_A          140 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD------VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN  213 (285)
T ss_dssp             HHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC------TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred             HHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCC------CCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCC
Confidence                 78899999999999999999999987 553      56788999999999999999    999999999999986


Q ss_pred             ccccCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCcHHHHHHhcCChhHHHHHHHhhCCCCh
Q 045083          305 YSANRNSETPLYMAAANGSVKIVAKILQ-KCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRGTFKP  372 (556)
Q Consensus       305 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~~  372 (556)
                       .+|..|+||||+|+++|+.+++++|++ .|.+++.+|..|+||||+|+..++.++++.++..+.....
T Consensus       214 -~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~  281 (285)
T 1wdy_A          214 -VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             -CCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred             -CcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCc
Confidence             778999999999999999999999999 7999999999999999999999999999999887765443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=8.3e-42  Score=339.86  Aligned_cols=314  Identities=18%  Similarity=0.196  Sum_probs=224.5

Q ss_pred             CHHHHHHHhcCCchHHHHhhhhhcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCC
Q 045083            2 DRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAK   81 (556)
Q Consensus         2 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   81 (556)
                      .++|..|+..|+.+.++.++++.....    ...++++-+...|+.           ++++++..         +..+..
T Consensus        38 ~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~-----------~~~~~~~~---------~~~~~~   93 (373)
T 2fo1_E           38 QHSLLEASYDGYIKRQRNELQHYSLYP----NPQGYGNGNDFLGDF-----------NHTNLQIP---------TEPEPE   93 (373)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccCCccccchhhhhhhhcccc----CccccCCCCCccccc-----------cccccccc---------cCCCCC
Confidence            456888889999999999998766543    234566778888888           88877632         356889


Q ss_pred             CChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhc-cCCCcHhHHHHhcCCHHHHHHHH--------h
Q 045083           82 GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTN-EEQNTPLHEAVRLRSVDVVKILI--------K  152 (556)
Q Consensus        82 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll--------~  152 (556)
                      |.||||+|+..|+ +++++|++.  +                ++..| ..|.||||+|+..|+.+++++|+        +
T Consensus        94 g~t~L~~Aa~~~~-~~~~~L~~~--~----------------~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~  154 (373)
T 2fo1_E           94 SPIKLHTEAAGSY-AITEPITRE--S----------------VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIA  154 (373)
T ss_dssp             CCCHHHHHHHSSS-CCCSCCSTT--T----------------TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHH
T ss_pred             CccHHHHHhcCCc-hHHHHhccc--c----------------ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence            9999999999665 788877542  1                45566 78999999999999998888776        7


Q ss_pred             cCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcC---CC
Q 045083          153 ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKAD---PH  229 (556)
Q Consensus       153 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~---~~  229 (556)
                      .|.+++ ..|..|.||||+|+..|+.+++++|++++.+...      .+..|.||||.|+..|+.+++++|++.+   .+
T Consensus       155 ~ga~vn-~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~------~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~  227 (373)
T 2fo1_E          155 AGADVN-AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTI------YNKSERSALHQAAANRDFGMMVYMLNSTKLKGD  227 (373)
T ss_dssp             TCCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC------CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHT
T ss_pred             cCCCCc-CCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcc------cCCCCCCHHHHHHHCCCHHHHHHHHhcCccccC
Confidence            888887 7789999999999999999999999999876543      7889999999999999999999999987   45


Q ss_pred             CCccCCCCCCCHHHHHHHcC---CHHHHHHHHHcCChhHHH--HHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcC-CCC
Q 045083          230 VPYSANRNSETPLYMAVANG---SAEIVAEILQNCPESAAR--QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEAD-PHV  303 (556)
Q Consensus       230 ~~~~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~~~~~~~~--~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~-~~~  303 (556)
                       .+..|.+|.||||+|+..+   +.+++++|++.+.+....  ...+..|..|.||||+|+..|+.+++++|++.+ .++
T Consensus       228 -~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  306 (373)
T 2fo1_E          228 -IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK  306 (373)
T ss_dssp             -TSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCT
T ss_pred             -hhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCc
Confidence             4778999999999999998   899999999998753210  001235678999999999999999999999987 555


Q ss_pred             CccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHHHHHHhh
Q 045083          304 PYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVR  367 (556)
Q Consensus       304 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~~~~~~  367 (556)
                       +.+|..|+||||+|+.+|+.+++++|+++|++++.+|..|+||||+|+..++.++++.++.++
T Consensus       307 -n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~  369 (373)
T 2fo1_E          307 -DKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCR  369 (373)
T ss_dssp             -TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC
T ss_pred             -cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence             488999999999999999999999999999999999999999999999999999998887654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=6.2e-40  Score=313.86  Aligned_cols=256  Identities=23%  Similarity=0.317  Sum_probs=142.4

Q ss_pred             CCCCeeEEeeeccccccccccccccccchHHHHHHHHhh-------CccccccccCCCChHHHHHHHhCcHHHHHHHHHH
Q 045083           32 VMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDL-------CPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVF  104 (556)
Q Consensus        32 ~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~  104 (556)
                      ..|.|+||+|+..|+.           +.+..++..-..       ....++..|..|+||||+|+..|+.+++++|++.
T Consensus        13 ~~~~~~lH~Aa~~g~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~   81 (285)
T 3d9h_A           13 GLVPRGSHMASMDGKQ-----------GGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQ   81 (285)
T ss_dssp             ----------------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             hHHHHHHHHHhhcCCC-----------CCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHC
Confidence            6899999999999997           555554221100       1233566788899999999999999999999988


Q ss_pred             hccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHH
Q 045083          105 ANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEI  184 (556)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  184 (556)
                      +.+                ++.+|.+|.||||+|+..|+.+++++|++.+.+++ ..+..|.||||+|+..|+.+++++|
T Consensus        82 g~~----------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~~~~~~v~~L  144 (285)
T 3d9h_A           82 GWA----------------VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN-GVTADWHTPLFNACVSGSWDCVNLL  144 (285)
T ss_dssp             TCC----------------SCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             CCC----------------CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCHHHHHHHH
Confidence            876                45678889999999999999999999999888876 6677777888888877777777777


Q ss_pred             HHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChh
Q 045083          185 LQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPES  264 (556)
Q Consensus       185 l~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~  264 (556)
                      ++++.+..       .+..|.||||.|+..|+.+++++|++.+.++ +..|.+|.||||+|+..|+.+++++|++.+.+ 
T Consensus       145 l~~g~~~~-------~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-  215 (285)
T 3d9h_A          145 LQHGASVQ-------PESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESGAD-  215 (285)
T ss_dssp             HHTTCCSS-------CSCTTSCHHHHHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred             HHCCCCCC-------CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCC-
Confidence            77765432       2334555666665555555555555555542 34444455555555555555555555544432 


Q ss_pred             HHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhc
Q 045083          265 AARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQK  333 (556)
Q Consensus       265 ~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  333 (556)
                           ++ .+..|+||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+  ++.+++++|+++
T Consensus       216 -----~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~-~~d~~g~t~l~~A~--~~~~~~~~Ll~~  275 (285)
T 3d9h_A          216 -----VN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQ-AKNAEGKRPVELVP--PESPLAQLFLER  275 (285)
T ss_dssp             -----TT-CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCGGGGSC--TTSHHHHHHHHH
T ss_pred             -----CC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHhc--CccHHHHHHHHh
Confidence                 11 23444444444444444444444444444433 34444444444444  223444444443

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.7e-39  Score=310.89  Aligned_cols=265  Identities=17%  Similarity=0.175  Sum_probs=204.8

Q ss_pred             ccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCC
Q 045083           78 ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHV  157 (556)
Q Consensus        78 ~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~  157 (556)
                      ....|.|+||+|+..|+.+.+..++..+........-     ....+...|..|.||||+|+..|+.+++++|++.+.++
T Consensus        11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~   85 (285)
T 3d9h_A           11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRL-----LSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV   85 (285)
T ss_dssp             -------------------------------CCSEEC-----CCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhh-----hhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            4567899999999999988777776654331100000     00014567899999999999999999999999999998


Q ss_pred             cccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCC
Q 045083          158 SYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRN  237 (556)
Q Consensus       158 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~  237 (556)
                      + ..|..|.||||+|+..|+.+++++|++++.+..      ..+..|.||||.|+..|+.+++++|++.+.+..  .+.+
T Consensus        86 ~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~  156 (285)
T 3d9h_A           86 N-IITADHVSPLHEACLGGHLSCVKILLKHGAQVN------GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESD  156 (285)
T ss_dssp             C-EECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSS------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCT
T ss_pred             C-CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC------CCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CCCC
Confidence            7 788899999999999999999999999987643      378999999999999999999999999998853  3456


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHH
Q 045083          238 SETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYM  317 (556)
Q Consensus       238 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~  317 (556)
                      |.||||+|+..|+.+++++|++.+.+      ++.+|..|.||||+|+..|+.+++++|++.|++++  .|..|+||||+
T Consensus       157 g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~g~t~L~~  228 (285)
T 3d9h_A          157 LASPIHEAARRGHVECVNSLIAYGGN------IDHKISHLGTPLYLACENQQRACVKKLLESGADVN--QGKGQDSPLHA  228 (285)
T ss_dssp             TSCHHHHHHHHTCHHHHHHHHHTTCC------TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT--CCBTTBCHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCC------CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC--CCCCCCCHHHH
Confidence            99999999999999999999999874      56788999999999999999999999999999986  48899999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHHHHHHh
Q 045083          318 AAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIV  366 (556)
Q Consensus       318 A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~~~~~  366 (556)
                      |+..++.+++++|+++|++++.+|.+|+||||+|+.  ..++++.++..
T Consensus       229 A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~--~~~~~~~Ll~~  275 (285)
T 3d9h_A          229 VVRTASEELACLLMDFGADTQAKNAEGKRPVELVPP--ESPLAQLFLER  275 (285)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCT--TSHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcC--ccHHHHHHHHh
Confidence            999999999999999999999999999999999993  45666666655

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.6e-40  Score=330.61  Aligned_cols=282  Identities=22%  Similarity=0.217  Sum_probs=223.5

Q ss_pred             HHHHhcCCchHHHHhhhhhcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCcccccccc-CCCCh
Q 045083            6 YEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQAN-AKGDS   84 (556)
Q Consensus         6 ~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~g~t   84 (556)
                      ..+...|+.+.++.++...     .|..|.|+||+|+..+ .           ++++.|   ..   ..++..| ..|+|
T Consensus        71 ~~~~~~g~~~~~~~~~~~~-----~~~~g~t~L~~Aa~~~-~-----------~~~~~L---~~---~~~n~~d~~~g~t  127 (373)
T 2fo1_E           71 NGNDFLGDFNHTNLQIPTE-----PEPESPIKLHTEAAGS-Y-----------AITEPI---TR---ESVNIIDPRHNRT  127 (373)
T ss_dssp             ----------------------------CCCHHHHHHHSS-S-----------CCCSCC---ST---TTTTTCCCSSCCC
T ss_pred             CCCCccccccccccccccC-----CCCCCccHHHHHhcCC-c-----------hHHHHh---cc---ccccccCCcCCCC
Confidence            4566678888888876653     4578999999999954 5           566665   22   3456666 78999


Q ss_pred             HHHHHHHhCcHHHHHHHH--------HHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCC
Q 045083           85 PLHLAAKKGHTAIVEFLI--------VFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPH  156 (556)
Q Consensus        85 pLh~A~~~g~~~iv~~Ll--------~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  156 (556)
                      |||+|+..|+.+++++|+        +.|++                ++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus       128 ~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~----------------vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  191 (373)
T 2fo1_E          128 VLHWIASNSSAEKSEDLIVHEAKECIAAGAD----------------VNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD  191 (373)
T ss_dssp             HHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC----------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC----------------CcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCC
Confidence            999999999999988887        45554                567899999999999999999999999999999


Q ss_pred             CcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcC---CHHHHHHHHhcCCCCCc-
Q 045083          157 VSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLR---RVDVVKILIKADPHVPY-  232 (556)
Q Consensus       157 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~---~~~~v~~Ll~~~~~~~~-  232 (556)
                      ++ ..+..|.||||+|+..|+.+++++|++++..   ...++..+..|.||||.|+..+   +.+++++|++.+.+... 
T Consensus       192 ~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~---~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~  267 (373)
T 2fo1_E          192 PT-IYNKSERSALHQAAANRDFGMMVYMLNSTKL---KGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYD  267 (373)
T ss_dssp             SC-CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHH---HHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCC
T ss_pred             Cc-ccCCCCCCHHHHHHHCCCHHHHHHHHhcCcc---ccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccc
Confidence            87 7788999999999999999999999987521   0113347899999999999998   89999999999988632 


Q ss_pred             ------cCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCcc
Q 045083          233 ------SANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYS  306 (556)
Q Consensus       233 ------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~  306 (556)
                            ..|..|.||||+|+..|+.+++++|++.+..     .++.+|..|+||||+|+..|+.+++++|+++|++++ .
T Consensus       268 ~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~-----~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~-~  341 (373)
T 2fo1_E          268 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS-----NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE-A  341 (373)
T ss_dssp             SGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCC-----CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS-C
T ss_pred             cccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCC-----CccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-C
Confidence                  3677999999999999999999999988632     357889999999999999999999999999999986 7


Q ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 045083          307 ANRNSETPLYMAAANGSVKIVAKILQKCPS  336 (556)
Q Consensus       307 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~  336 (556)
                      +|..|+||||+|+.+|+.+++++|++++++
T Consensus       342 ~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          342 VDATDHTARQLAQANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             CCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            899999999999999999999999988765

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.9e-39  Score=321.05  Aligned_cols=294  Identities=20%  Similarity=0.196  Sum_probs=252.1

Q ss_pred             HHhhhhhcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCCCChHHHHHHHhCcHHH
Q 045083           18 REIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAI   97 (556)
Q Consensus        18 ~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~i   97 (556)
                      ..|.+.+.+...++..+.++||.|+..|+.           +.++.+   +...+..++..|..|.||||+|+..|+.++
T Consensus         8 l~l~~~~~~~~~~~~~~~~~L~~A~~~g~~-----------~~v~~l---l~~~~~~~~~~d~~g~t~L~~A~~~g~~~~   73 (351)
T 3utm_A            8 LDLADPSAKAVLTGEYKKDELLEAARSGNE-----------EKLMAL---LTPLNVNCHASDGRKSTPLHLAAGYNRVRI   73 (351)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHTCH-----------HHHHHH---CCTTTTTCCCSSTTCCCHHHHHHHTTCHHH
T ss_pred             hhccCCceeeeeeccccchhHHHHHHcCCH-----------HHHHHH---HHhcCCCcccCCCCCCCHHHHHHHcCCHHH
Confidence            345566677777778888999999999999           888888   666677788889999999999999999999


Q ss_pred             HHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCC
Q 045083           98 VEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGS  177 (556)
Q Consensus        98 v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~  177 (556)
                      |++|+++|.+                ++..|..|.||||+|+..|+.+++++|++++++++ ..+..|.||||+|+..|+
T Consensus        74 v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~  136 (351)
T 3utm_A           74 VQLLLQHGAD----------------VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVN-AMDLWQFTPLHEAASKNR  136 (351)
T ss_dssp             HHHHHHTTCC----------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHcCCC----------------CCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCC
Confidence            9999998877                45678889999999999999999999999998887 678889999999999999


Q ss_pred             HHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHH
Q 045083          178 AEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEI  257 (556)
Q Consensus       178 ~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  257 (556)
                      .+++++|++++.+...      .+..|.+|++.|+..+..+.+++....             .++..++..++.+.++.+
T Consensus       137 ~~~v~~Ll~~g~~~~~------~~~~g~~~l~~a~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~  197 (351)
T 3utm_A          137 VEVCSLLLSHGADPTL------VNCHGKSAVDMAPTPELRERLTYEFKG-------------HSLLQAAREADLAKVKKT  197 (351)
T ss_dssp             HHHHHHHHHTTCCTTC------CCTTSCCHHHHCSSHHHHHHHHHHHHH-------------HHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCcc------ccCCCCcchHHHhhhhhHHHHHhhhcc-------------cHHHHHHHhccHHHHHHH
Confidence            9999999998876543      688899999999888877777776542             467888899999999999


Q ss_pred             HHcCChhHHHHHhhhcCCCCCchhHHHHhc---CCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 045083          258 LQNCPESAARQMLEKTNEEQNTPLHEAVRL---RSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKC  334 (556)
Q Consensus       258 l~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  334 (556)
                      +.....      ....+..|.||||+|+..   ++.+++++|++.|.+++ .+|..|+||||+|+.+|+.+++++|+++|
T Consensus       198 l~~~~~------~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  270 (351)
T 3utm_A          198 LALEII------NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN-EKNKDFMTPLHVAAERAHNDVMEVLHKHG  270 (351)
T ss_dssp             TTTCCT------TCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHhhcc------cccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcC-CcCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            887653      234567899999999999   56899999999999986 77999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHhcCChhHHHHHHHhhC
Q 045083          335 PSPAHEGPDGKTALHAAVYTYPTDILERVLIVRG  368 (556)
Q Consensus       335 ~~~~~~d~~g~t~L~~A~~~~~~~~~~~~~~~~~  368 (556)
                      ++++.+|..|+||||+|+..++.++++.++..+.
T Consensus       271 a~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga  304 (351)
T 3utm_A          271 AKMNALDSLGQTALHRAALAGHLQTCRLLLSYGS  304 (351)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            9999999999999999999999999999887654

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=4.8e-39  Score=302.42  Aligned_cols=230  Identities=20%  Similarity=0.278  Sum_probs=180.9

Q ss_pred             HhhhccCCCcHhHHHHhcC-------------CHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Q 045083          124 LKMTNEEQNTPLHEAVRLR-------------SVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQ  190 (556)
Q Consensus       124 l~~~~~~g~t~Lh~A~~~g-------------~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~  190 (556)
                      ++.+|.+|.||||+|+..|             +.+++++|++.++++....|..|.||||+|+..|+.+++++|++++.+
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~   82 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD   82 (253)
T ss_dssp             -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            5678999999999999987             899999999999999877899999999999999999999999999876


Q ss_pred             hhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHh
Q 045083          191 SAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQML  270 (556)
Q Consensus       191 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~  270 (556)
                      ...      .+..|.||||.|+..|+.+++++|++.++...+..+.+|.||||+|+..|+.+++++|++.+.+      +
T Consensus        83 ~~~------~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~  150 (253)
T 1yyh_A           83 ANI------QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD------V  150 (253)
T ss_dssp             TTC------CCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC------T
T ss_pred             CCC------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCC------C
Confidence            433      7889999999999999999999999999855688899999999999999999999999999874      5


Q ss_pred             hhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q 045083          271 EKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHA  350 (556)
Q Consensus       271 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~  350 (556)
                      +.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+.+|+.+++++|+++|++++.+|..|+||+|+
T Consensus       151 ~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~  229 (253)
T 1yyh_A          151 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI  229 (253)
T ss_dssp             TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHH
Confidence            7888999999999999999999999999999986 779999999999999999999999999999999999999999999


Q ss_pred             HHhcCChhHHHHHHHh
Q 045083          351 AVYTYPTDILERVLIV  366 (556)
Q Consensus       351 A~~~~~~~~~~~~~~~  366 (556)
                      |+..++.++++++...
T Consensus       230 A~~~g~~~i~~~l~~~  245 (253)
T 1yyh_A          230 AQERMHHDIVRLLDLE  245 (253)
T ss_dssp             HHHTTCHHHHHHHHC-
T ss_pred             HHHcCCHHHHHHHHHH
Confidence            9999999998877543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.4e-39  Score=323.57  Aligned_cols=270  Identities=21%  Similarity=0.240  Sum_probs=230.3

Q ss_pred             cccccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcC
Q 045083           75 LFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKAD  154 (556)
Q Consensus        75 ~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~  154 (556)
                      .+..|.+|.||||+||..|+.++|++|+++|.+                ++..|..|.||||+|+..|+.+++++|++.+
T Consensus        13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~----------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g   76 (364)
T 3ljn_A           13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVS----------------PTIQNRFGCTALHLACKFGCVDTAKYLASVG   76 (364)
T ss_dssp             ---CCHHHHHHHHHHHHHTCHHHHHHHHHTTCC----------------TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHC
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHCC
Confidence            456788999999999999999999999999877                5668999999999999999999999999999


Q ss_pred             CCCcccccCCCCcHHHHHHHcCCHHHHHHHHHh----CCChhHHH-----------HhhhcCCCCCcHhHHHHhcC--CH
Q 045083          155 PHVSYSANRNSETLLYMAVANGSAEIVAEILQN----CPQSAARQ-----------MLEKTNEEQNTPLHEAVRLR--RV  217 (556)
Q Consensus       155 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----~~~~~~~~-----------~~~~~~~~g~t~L~~A~~~~--~~  217 (556)
                      ++..   +..|.||||+|+..|+.+++++|++.    +.......           ..+..+..|.||||.|+..|  +.
T Consensus        77 ~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~  153 (364)
T 3ljn_A           77 EVHS---LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYL  153 (364)
T ss_dssp             CCCC---CBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGH
T ss_pred             CCcc---ccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchH
Confidence            9654   45899999999999999999999998    54432200           01115678999999999999  99


Q ss_pred             HHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHH
Q 045083          218 DVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILI  297 (556)
Q Consensus       218 ~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll  297 (556)
                      +++++|++.+.++ +..|..|.||||+|+..|+.+++++|++.+++... ..++..|..|+||||+|+..|+.+++++|+
T Consensus       154 ~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  231 (364)
T 3ljn_A          154 EMIKILVQLGASP-TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSS-LRLDYANKQGNSHLHWAILINWEDVAMRFV  231 (364)
T ss_dssp             HHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSS-CCTTCCCTTCCCTTHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHhccccccc-ccccccCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            9999999999885 78899999999999999999999999998864100 015678899999999999999999999999


Q ss_pred             hcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCC------------CCCCCCCCcHHHHHHhcCChhHHHHHHH
Q 045083          298 EADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSP------------AHEGPDGKTALHAAVYTYPTDILERVLI  365 (556)
Q Consensus       298 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~------------~~~d~~g~t~L~~A~~~~~~~~~~~~~~  365 (556)
                      ++|++++ .+|..|+||||+|+..|+.+++++|+++++++            ...+..|+||++.|+..+..+.+..++.
T Consensus       232 ~~gad~~-~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~  310 (364)
T 3ljn_A          232 EMGIDVN-MEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQ  310 (364)
T ss_dssp             TTTCCTT-CCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHH
T ss_pred             HcCCCCC-CCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHH
Confidence            9999986 78999999999999999999999999997653            2357788999999998887766655544


Q ss_pred             h
Q 045083          366 V  366 (556)
Q Consensus       366 ~  366 (556)
                      .
T Consensus       311 ~  311 (364)
T 3ljn_A          311 E  311 (364)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.1e-38  Score=305.46  Aligned_cols=260  Identities=22%  Similarity=0.238  Sum_probs=191.9

Q ss_pred             cccccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcC
Q 045083           75 LFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKAD  154 (556)
Q Consensus        75 ~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~  154 (556)
                      ++.+|.+|+||||+|+..|+.++|++|++.+.....             ++.+|..|.||||+|+..|+.+++++|+++|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g   68 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEY-------------LDLQNDLGQTALHLAAILGEASTVEKLYAAG   68 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGG-------------GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccc-------------ccccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            467899999999999999999999999998876321             4668899999999999999999999999999


Q ss_pred             CCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHH-------HHhhhcCCCCCcHhHHHHhcCCHHHHHHH-Hhc
Q 045083          155 PHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAAR-------QMLEKTNEEQNTPLHEAVRLRRVDVVKIL-IKA  226 (556)
Q Consensus       155 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-------~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-l~~  226 (556)
                      ++++ ..+..|.||||+|+..|+.+++++|+++++.....       .........+.++++.+...+.......+ ...
T Consensus        69 a~~~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (282)
T 1oy3_D           69 AGVL-VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDW  147 (282)
T ss_dssp             CCSS-CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCG
T ss_pred             CCCC-CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhh
Confidence            9987 77889999999999999999999999987542110       00111234556677776665544333333 333


Q ss_pred             CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCC-CCCchhHHHHhcCCHHHHHHHHhcCCCCCc
Q 045083          227 DPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNE-EQNTPLHEAVRLRSVDVAKILIEADPHVPY  305 (556)
Q Consensus       227 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~-~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~  305 (556)
                      +.+ .+..+..|.||||+|+..|+.+++++|++.+.+      ++..+. .|+||||+|+..|+.+++++|+++|++++ 
T Consensus       148 ~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~-  219 (282)
T 1oy3_D          148 RLQ-LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD------LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT-  219 (282)
T ss_dssp             GGG-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-
T ss_pred             hhc-CCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC------CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc-
Confidence            333 467899999999999999999999999999975      455554 49999999999999999999999999986 


Q ss_pred             cccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCC
Q 045083          306 SANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYP  356 (556)
Q Consensus       306 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~  356 (556)
                      .+|..|+||||+|+.+|+.+++++|+++|++++.+|..|.|||++|.....
T Consensus       220 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          220 ARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             CCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC---------------
T ss_pred             ccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCccc
Confidence            789999999999999999999999999999999999999999999987543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.3e-38  Score=299.51  Aligned_cols=232  Identities=22%  Similarity=0.246  Sum_probs=179.3

Q ss_pred             cccccCCCChHHHHHHHhC-------------cHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhc
Q 045083           75 LFQANAKGDSPLHLAAKKG-------------HTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL  141 (556)
Q Consensus        75 ~~~~~~~g~tpLh~A~~~g-------------~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~  141 (556)
                      ++.+|.+|.||||+|+..|             +.+++++|++.+.+.               ....|..|.||||+|+..
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~---------------~~~~d~~g~t~L~~A~~~   67 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASL---------------HNQTDRTGETALHLAARY   67 (253)
T ss_dssp             ----------------------------------------------------------------CCCTTSCCHHHHHHHT
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCc---------------ccccCCCCCcHHHHHHHc
Confidence            5678999999999999988             899999999988763               234688999999999999


Q ss_pred             CCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHH
Q 045083          142 RSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVK  221 (556)
Q Consensus       142 g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~  221 (556)
                      |+.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|+++++...     +..+..|.||||.|+..|+.++++
T Consensus        68 g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-----~~~~~~g~t~L~~A~~~~~~~~v~  141 (253)
T 1yyh_A           68 SRSDAAKRLLEASADAN-IQDNMGRTPLHAAVSADAQGVFQILIRNRATDL-----DARMHDGTTPLILAARLAVEGMLE  141 (253)
T ss_dssp             TCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCT-----TCCCTTCCCHHHHHHHHTCSSHHH
T ss_pred             CCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-----cccCCCCCcHHHHHHHcChHHHHH
Confidence            99999999999999987 778999999999999999999999999986432     237889999999999999999999


Q ss_pred             HHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCC
Q 045083          222 ILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADP  301 (556)
Q Consensus       222 ~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~  301 (556)
                      +|++.+.++ +..|.+|.||||+|+..|+.+++++|++.+.+      ++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus       142 ~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga  214 (253)
T 1yyh_A          142 DLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN------KDMQNNREETPLFLAAREGSYETAKVLLDHFA  214 (253)
T ss_dssp             HHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            999999985 78899999999999999999999999999875      56788999999999999999999999999999


Q ss_pred             CCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCC
Q 045083          302 HVPYSANRNSETPLYMAAANGSVKIVAKILQKCP  335 (556)
Q Consensus       302 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~  335 (556)
                      +++ .+|..|+||||+|+++|+.+++++|.....
T Consensus       215 ~~~-~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~  247 (253)
T 1yyh_A          215 NRD-ITDHMDRLPRDIAQERMHHDIVRLLDLEHH  247 (253)
T ss_dssp             CTT-CCCTTCCCHHHHHHHTTCHHHHHHHHC---
T ss_pred             Ccc-ccccCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence            986 789999999999999999999999876543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=7.5e-38  Score=292.24  Aligned_cols=235  Identities=24%  Similarity=0.345  Sum_probs=133.8

Q ss_pred             cccccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcC
Q 045083           75 LFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKAD  154 (556)
Q Consensus        75 ~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~  154 (556)
                      .+.+|.+|+||||+||..|+.+++++|++.......+            ++..|..|.||||+|+..|+.+++++|++.|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   69 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE------------LDIYNNLRQTPLHLAVITTLPSVVRLLVTAG   69 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC------------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCC------------CCcccccCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            3566788888888888888888888888632111000            4556777888888888888888888888887


Q ss_pred             CCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccC
Q 045083          155 PHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSA  234 (556)
Q Consensus       155 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~  234 (556)
                      .++. ..+..|.||||+|+..|+.+++++|++.++....  .++..+..|.||||.|+..|+.+++++|++.+.+.. ..
T Consensus        70 ~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~  145 (241)
T 1k1a_A           70 ASPM-ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTL--DLEARNYDGLTALHVAVNTECQETVQLLLERGADID-AV  145 (241)
T ss_dssp             CCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSC--CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CC
T ss_pred             CCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc--cccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcc-cc
Confidence            7776 5567777788888877777777777777642100  011244555555555555555555555555555532 22


Q ss_pred             C-CCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCC
Q 045083          235 N-RNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSET  313 (556)
Q Consensus       235 ~-~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t  313 (556)
                      + ..|.||||+|+..|+.+++++|++.+.+      ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|+|
T Consensus       146 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t  218 (241)
T 1k1a_A          146 DIKSGRSPLIHAVENNSLSMVQLLLQHGAN------VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS-LKNCHNDT  218 (241)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCC
T ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHHcCCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC-CcCCCCCC
Confidence            2 4455555555555555555555554432      33444445555555555555555555555554443 34444555


Q ss_pred             HHHHHHHcCCHHHHHHHHh
Q 045083          314 PLYMAAANGSVKIVAKILQ  332 (556)
Q Consensus       314 ~L~~A~~~~~~~~v~~Ll~  332 (556)
                      |||+|+..|+.++++.|++
T Consensus       219 pl~~A~~~~~~~i~~~l~~  237 (241)
T 1k1a_A          219 PLMVARSRRVIDILRGKAT  237 (241)
T ss_dssp             TTTTCSSHHHHHHHTC---
T ss_pred             HHHHHHhcCcHHHHhhhcc
Confidence            5555555555555444433

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=5.2e-37  Score=285.78  Aligned_cols=223  Identities=23%  Similarity=0.314  Sum_probs=206.2

Q ss_pred             HhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCC
Q 045083          124 LKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEE  203 (556)
Q Consensus       124 l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~  203 (556)
                      ++.+|..|.||||+|+..|+.+++++|+++|.+++ ..+..|.||||+|+..|+.+++++|++++.+...      .+..
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------~~~~   76 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP------KDAE   76 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCC------CCTT
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcC-ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCC------CCCC
Confidence            45678999999999999999999999999999987 7788999999999999999999999999866432      6889


Q ss_pred             CCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHH
Q 045083          204 QNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHE  283 (556)
Q Consensus       204 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~  283 (556)
                      |.||||.|+..|+.+++++|++.++...+..+..|.||||+|+..|+.+++++|++.+.+      ++.++..|.||||+
T Consensus        77 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~L~~  150 (237)
T 3b7b_A           77 GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD------INIRDNEENICLHW  150 (237)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC------CCccCCCCCCHHHH
Confidence            999999999999999999999999665688899999999999999999999999999874      56788999999999


Q ss_pred             HHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHH
Q 045083          284 AVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDIL  360 (556)
Q Consensus       284 A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~  360 (556)
                      |+..|+.+++++|++.|++++ .+|..|+||||+|+++++.+++++|+++|++++.+|.+|+||||+|+..++.+.+
T Consensus       151 A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~  226 (237)
T 3b7b_A          151 AAFSGCVDIAEILLAAKCDLH-AVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSA  226 (237)
T ss_dssp             HHHHCCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHH
T ss_pred             HHHCCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999986 7789999999999999999999999999999999999999999999998876443

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=4.8e-37  Score=285.97  Aligned_cols=228  Identities=28%  Similarity=0.377  Sum_probs=207.8

Q ss_pred             cccccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcC
Q 045083           75 LFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKAD  154 (556)
Q Consensus        75 ~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~  154 (556)
                      ++..|.+|.||||+|+..|+.+++++|+++|.+                ++..+..|.||||+|+..|+.+++++|++.+
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   67 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN----------------IDTCSEDQRTPLMEAAENNHLEAVKYLIKAG   67 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC----------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCC----------------cCccCCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence            467889999999999999999999999999887                4567889999999999999999999999999


Q ss_pred             CCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccC
Q 045083          155 PHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSA  234 (556)
Q Consensus       155 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~  234 (556)
                      .++. ..+..|.||||+|+..|+.+++++|+++++...     +..+..|.||||.|+..++.+++++|++.+.++ +..
T Consensus        68 ~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~-----~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~  140 (237)
T 3b7b_A           68 ALVD-PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV-----NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIR  140 (237)
T ss_dssp             CCCC-CCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCT-----TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCC
T ss_pred             CCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc-----ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-Ccc
Confidence            9887 678899999999999999999999999984432     227889999999999999999999999999985 788


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCH
Q 045083          235 NRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETP  314 (556)
Q Consensus       235 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~  314 (556)
                      +..|.||||+|+..|+.+++++|++.+.+      ++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|+||
T Consensus       141 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~-~~d~~g~t~  213 (237)
T 3b7b_A          141 DNEENICLHWAAFSGCVDIAEILLAAKCD------LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVT-LKNKEGETP  213 (237)
T ss_dssp             CTTSCCHHHHHHHHCCHHHHHHHHTTTCC------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCTTSCCH
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHcCCC------CCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCC-ccCCCCCCH
Confidence            99999999999999999999999999874      56788999999999999999999999999999986 789999999


Q ss_pred             HHHHHHcCCHHHHHHHHh
Q 045083          315 LYMAAANGSVKIVAKILQ  332 (556)
Q Consensus       315 L~~A~~~~~~~~v~~Ll~  332 (556)
                      ||+|+.+++.+.+..+++
T Consensus       214 l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          214 LQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             HHHSCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999876666543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=3.1e-37  Score=288.06  Aligned_cols=228  Identities=20%  Similarity=0.247  Sum_probs=202.0

Q ss_pred             HhhhccCCCcHhHHHHhcCCHHHHHHHHh----cCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhh
Q 045083          124 LKMTNEEQNTPLHEAVRLRSVDVVKILIK----ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEK  199 (556)
Q Consensus       124 l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~  199 (556)
                      ++.+|.+|.||||+|+..|+.+++++|++    .+.+++ ..+..|.||||+|+..|+.+++++|++++.+...      
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------   74 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMA------   74 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC------
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-cccccCCCHHHHHHHcCCHHHHHHHHHcCCCccc------
Confidence            45689999999999999999999999997    566665 7788999999999999999999999999876533      


Q ss_pred             cCCCCCcHhHHHHhcCCHHHHHHHHhcCCC---CCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcC-C
Q 045083          200 TNEEQNTPLHEAVRLRRVDVVKILIKADPH---VPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTN-E  275 (556)
Q Consensus       200 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~---~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-~  275 (556)
                      .+..|.||||.|+..|+.+++++|++.++.   ..+..+..|.||||+|+..|+.+++++|++.+.+      ++..+ .
T Consensus        75 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~  148 (241)
T 1k1a_A           75 LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD------IDAVDIK  148 (241)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC------ccccccc
Confidence            688999999999999999999999999872   2467889999999999999999999999999875      45556 7


Q ss_pred             CCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcC
Q 045083          276 EQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTY  355 (556)
Q Consensus       276 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~  355 (556)
                      .|.||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+.+|+.+++++|+++|++++.+|..|+||||+|+..+
T Consensus       149 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~  227 (241)
T 1k1a_A          149 SGRSPLIHAVENNSLSMVQLLLQHGANVN-AQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRR  227 (241)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcC
Confidence            89999999999999999999999999986 77999999999999999999999999999999999999999999999988


Q ss_pred             ChhHHHHHHH
Q 045083          356 PTDILERVLI  365 (556)
Q Consensus       356 ~~~~~~~~~~  365 (556)
                      ..++++.+..
T Consensus       228 ~~~i~~~l~~  237 (241)
T 1k1a_A          228 VIDILRGKAT  237 (241)
T ss_dssp             HHHHHTC---
T ss_pred             cHHHHhhhcc
Confidence            8888765543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=5.4e-38  Score=312.04  Aligned_cols=280  Identities=19%  Similarity=0.228  Sum_probs=223.1

Q ss_pred             HHHHHHHhcCCchHHHHhhhhhcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCCC
Q 045083            3 RKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKG   82 (556)
Q Consensus         3 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g   82 (556)
                      ++||+||..|+.++|++|+++|++++..|..|.||||+|+..|+.           +++++|++   .+.   ...+.+|
T Consensus        22 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~-----------~~v~~Ll~---~g~---~~~~~~g   84 (364)
T 3ljn_A           22 EKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCV-----------DTAKYLAS---VGE---VHSLWHG   84 (364)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCH-----------HHHHHHHH---HCC---CCCCBTT
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCH-----------HHHHHHHH---CCC---CccccCC
Confidence            689999999999999999999999999999999999999999999           99999955   333   2334589


Q ss_pred             ChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhH-----HHHHHHhhhccCCCcHhHHHHhcC--CHHHHHHHHhcCC
Q 045083           83 DSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVES-----AARQILKMTNEEQNTPLHEAVRLR--SVDVVKILIKADP  155 (556)
Q Consensus        83 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~  155 (556)
                      .||||+|+..|+.+++++|++.+.....+.......     ......+..|..|.||||+|+..|  +.+++++|++.|.
T Consensus        85 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga  164 (364)
T 3ljn_A           85 QKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGA  164 (364)
T ss_dssp             BCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCC
Confidence            999999999999999999999844321111000000     000001227889999999999999  9999999999999


Q ss_pred             CCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCC
Q 045083          156 HVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSAN  235 (556)
Q Consensus       156 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~  235 (556)
                      +++ ..|..|.||||+|+..|+.+++++|++++++... ..++..+..|.||||+|+..|+.+++++|++++.++ +..|
T Consensus       165 ~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-~~~d  241 (364)
T 3ljn_A          165 SPT-AKDKADETPLMRAMEFRNREALDLMMDTVPSKSS-LRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV-NMED  241 (364)
T ss_dssp             CTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSS-CCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCT-TCCC
T ss_pred             CCc-ccCCCCCCHHHHHHHcCCHHHHHHHHhccccccc-ccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCCC
Confidence            987 7788999999999999999999999999866210 002237889999999999999999999999999985 7889


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHH------hhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCC
Q 045083          236 RNSETPLYMAVANGSAEIVAEILQNCPESAARQM------LEKTNEEQNTPLHEAVRLRSVDVAKILIEADPH  302 (556)
Q Consensus       236 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~------~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  302 (556)
                      .+|.||||+|+..|+.+++++|++++.+......      ....+..+++|++.|+..|+.+.+..|++.+.+
T Consensus       242 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~~~  314 (364)
T 3ljn_A          242 NEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLD  314 (364)
T ss_dssp             TTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHHHH
Confidence            9999999999999999999999999875432100      001345677788888888877777777766544

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.1e-36  Score=280.55  Aligned_cols=224  Identities=21%  Similarity=0.255  Sum_probs=122.3

Q ss_pred             CCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcc
Q 045083           80 AKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSY  159 (556)
Q Consensus        80 ~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~  159 (556)
                      ..+.+|||.|+..|+.+.+++|++.+...               ++..|..|.||||+|+..|+.+++++|++.+.+++ 
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~---------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-   67 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILADKSL---------------ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-   67 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHHCGGG---------------GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHhchhh---------------hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC-
Confidence            34566777777777777777776654321               34456667777777777777777777777666655 


Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCC
Q 045083          160 SANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSE  239 (556)
Q Consensus       160 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~  239 (556)
                      ..+..|.||||+|+..|+.+++++|++++.+..      ..+..|.||||.|+..++.+++++|++.+.+. +..+..|.
T Consensus        68 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~  140 (231)
T 3aji_A           68 DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN------AVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDA  140 (231)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSC
T ss_pred             CcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCC------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCC
Confidence            455566666666666666666666666554422      14445555555555555555555555555442 34444455


Q ss_pred             CHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHH
Q 045083          240 TPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAA  319 (556)
Q Consensus       240 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~  319 (556)
                      ||||+|+..|+.+++++|++.+.+      ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+
T Consensus       141 t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~  213 (231)
T 3aji_A          141 TAMHRAAAKGNLKMVHILLFYKAS------TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY-IENKEEKTPLQVAK  213 (231)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCC------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHSC
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCCC------ccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHH
Confidence            555555555555555555544432      23344444455555555555555555554444443 34444455555544


Q ss_pred             HcCCHHHHHHHHhc
Q 045083          320 ANGSVKIVAKILQK  333 (556)
Q Consensus       320 ~~~~~~~v~~Ll~~  333 (556)
                      ..++.+++++|+++
T Consensus       214 ~~~~~~i~~lL~~~  227 (231)
T 3aji_A          214 GGLGLILKRLAEGE  227 (231)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHccc
Confidence            44444444444443

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=3.8e-36  Score=278.78  Aligned_cols=226  Identities=22%  Similarity=0.218  Sum_probs=207.6

Q ss_pred             ccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcH
Q 045083          128 NEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTP  207 (556)
Q Consensus       128 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~  207 (556)
                      +..+++|||.|++.|+.+.+++|++.++......+..|.||||+|+..|+.+++++|++.+.+..      ..+..|.||
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------~~~~~g~t~   76 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN------DKDDAGWSP   76 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC------CCCTTSCCH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC------CcCCCCCCH
Confidence            45689999999999999999999999888766889999999999999999999999999986643      278899999


Q ss_pred             hHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhc
Q 045083          208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRL  287 (556)
Q Consensus       208 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~  287 (556)
                      ||.|+..|+.+++++|++++.+. +..+..|.||||+|+..|+.+++++|++.+.+      ++.++..|.||||+|+..
T Consensus        77 L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~  149 (231)
T 3aji_A           77 LHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN------PDAKDHYDATAMHRAAAK  149 (231)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHH
T ss_pred             HHHHHHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------CCCcCCCCCcHHHHHHHc
Confidence            99999999999999999999985 78899999999999999999999999999874      567788999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHHHHHHhh
Q 045083          288 RSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVR  367 (556)
Q Consensus       288 g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~~~~~~  367 (556)
                      |+.+++++|+++|++++ .+|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+..++.++.+.+...+
T Consensus       150 ~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~  228 (231)
T 3aji_A          150 GNLKMVHILLFYKASTN-IQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEE  228 (231)
T ss_dssp             TCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCCCcc-ccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccc
Confidence            99999999999999986 77999999999999999999999999999999999999999999999888877777665443

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=4.4e-36  Score=277.73  Aligned_cols=214  Identities=21%  Similarity=0.251  Sum_probs=194.3

Q ss_pred             CCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhh-cCCCCCcHhH
Q 045083          131 QNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEK-TNEEQNTPLH  209 (556)
Q Consensus       131 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~~~g~t~L~  209 (556)
                      |+||||+|+..|+.+++++|++.+++.....+..|.||||+|+..|+.+++++|++.++....    .. .+..|.||||
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~----~~~~~~~g~t~L~   77 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL----DDYPDDSGWTPFH   77 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCG----GGCCCTTSCCHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccc----cccCCCCCCCHHH
Confidence            789999999999999999999999998777899999999999999999999999999843221    12 6789999999


Q ss_pred             HHHhcCCHHHHHHHHhcC--CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhc
Q 045083          210 EAVRLRRVDVVKILIKAD--PHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRL  287 (556)
Q Consensus       210 ~A~~~~~~~~v~~Ll~~~--~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~  287 (556)
                      .|+..|+.+++++|++.+  ++ .+..+..|.||||+|+..|+.+++++|++.+.+      ++.+|..|+||||+|+..
T Consensus        78 ~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~  150 (228)
T 2dzn_A           78 IACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS------VRIKDKFNQIPLHRAASV  150 (228)
T ss_dssp             HHHHHCCHHHHHHHHSSSSCCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC------SCCCCTTSCCHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHhCCCCcc-cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC------ccccCCCCCCHHHHHHHc
Confidence            999999999999999998  66 477899999999999999999999999999874      567889999999999999


Q ss_pred             CCHHHHHHHHhcC-CCCCccccCCCCCHHHHHHHcCCHHHHHHHH-hcCCCCCCCCCCCCcHHHHHHhcCC
Q 045083          288 RSVDVAKILIEAD-PHVPYSANRNSETPLYMAAANGSVKIVAKIL-QKCPSPAHEGPDGKTALHAAVYTYP  356 (556)
Q Consensus       288 g~~~~v~~Ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~~~~~~~~d~~g~t~L~~A~~~~~  356 (556)
                      |+.+++++|++.| .++ +.+|..|+||||+|+..|+.+++++|+ +.|++++.+|.+|+||+|+|+..+.
T Consensus       151 ~~~~~v~~Ll~~g~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~~~  220 (228)
T 2dzn_A          151 GSLKLIELLCGLGKSAV-NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQV  220 (228)
T ss_dssp             TCHHHHHHHHTTTCCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSSTTH
T ss_pred             CCHHHHHHHHhcCcccc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHHHH
Confidence            9999999999999 555 478999999999999999999999999 8899999999999999999976533

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=6.3e-37  Score=293.13  Aligned_cols=256  Identities=21%  Similarity=0.236  Sum_probs=187.4

Q ss_pred             ccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCCCChHHHHHHHhCcHHHHHHHHHHhcc
Q 045083           28 IVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANR  107 (556)
Q Consensus        28 ~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~  107 (556)
                      +..|.+|+||||+|+..|+.           +++++|++. ...+..++..+..|.||||+|+..|+.+++++|+++|++
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~-----------~~v~~Ll~~-g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~   70 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHE-----------PFLDFLLGF-SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG   70 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCH-----------HHHHHHHHH-HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             CccCCCCCcHHHHHHHcCCH-----------HHHHHHHhc-CCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            45789999999999999999           999999663 333445788999999999999999999999999999987


Q ss_pred             CCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCccc------------ccCCCCcHHHHHHHc
Q 045083          108 QPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYS------------ANRNSETLLYMAVAN  175 (556)
Q Consensus       108 ~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~------------~~~~g~t~L~~A~~~  175 (556)
                                      ++.+|..|.||||+|+..|+.+++++|++.+++....            ....+.++++.++..
T Consensus        71 ----------------~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (282)
T 1oy3_D           71 ----------------VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQP  134 (282)
T ss_dssp             ----------------SSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC--------------------------
T ss_pred             ----------------CCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhcccc
Confidence                            4567899999999999999999999999988764311            122355666666655


Q ss_pred             CCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHH
Q 045083          176 GSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVA  255 (556)
Q Consensus       176 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~  255 (556)
                      +.......++....     ..++..+..|.||||.|+..|+.+++++|++.++++....+..|+||||+|+..|+.++++
T Consensus       135 ~~~~~~~~~~~~~~-----~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~  209 (282)
T 1oy3_D          135 NPENEEEPRDEDWR-----LQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLE  209 (282)
T ss_dssp             ---------CCCGG-----GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccchhhhhhhhhhh-----hcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHH
Confidence            54433332222111     1234478899999999999999999999999999964443456999999999999999999


Q ss_pred             HHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCC
Q 045083          256 EILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGS  323 (556)
Q Consensus       256 ~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~  323 (556)
                      +|++.+.+      ++.+|..|+||||+|+.+|+.+++++|+++|++++ .+|..|.|||++|.....
T Consensus       210 ~Ll~~gad------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          210 LLLKAGAD------PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP-EDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             HHHHTTCC------TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCC-CCC---------------
T ss_pred             HHHHcCCC------CcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcC-cCCCcccccccccCCccc
Confidence            99999875      57888999999999999999999999999999986 789999999999987654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.3e-35  Score=276.72  Aligned_cols=232  Identities=20%  Similarity=0.211  Sum_probs=182.8

Q ss_pred             ccccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCC
Q 045083           76 FQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADP  155 (556)
Q Consensus        76 ~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~  155 (556)
                      +..|..|.||||.|+..|+.+++++|++.+.+                ++..+..|.||||+|+..|+.+++++|++.++
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~   66 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAGYD----------------VRQPDKENVTLLHWAAINNRIDLVKYYISKGA   66 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcCCC----------------cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence            45677888899999999999999999888766                45567888899999999999999999998888


Q ss_pred             CCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCC
Q 045083          156 HVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSAN  235 (556)
Q Consensus       156 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~  235 (556)
                      +.....+..|.||||+|+..|+.+++++|++.+.+...      .+..|.||||.|+..|+.+++++|++.+.+. +..+
T Consensus        67 ~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~  139 (240)
T 3eu9_A           67 IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSL------IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMD  139 (240)
T ss_dssp             CTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC
T ss_pred             cchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcc------cCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccC
Confidence            88766666788888888888888888888888765432      5777888888888888888888888887774 6777


Q ss_pred             CCCCCHHHHHHHcCC-HHHHHHHHHcCChhHHHHHhhhcCC-CCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCC
Q 045083          236 RNSETPLYMAVANGS-AEIVAEILQNCPESAARQMLEKTNE-EQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSET  313 (556)
Q Consensus       236 ~~g~t~L~~A~~~g~-~~~v~~Ll~~~~~~~~~~~~~~~~~-~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t  313 (556)
                      .+|.||||+|+..++ .+++++|++.+.+      ++..+. .|.||||+|+..|+.+++++|+++|++++ .+|..|+|
T Consensus       140 ~~g~t~l~~a~~~~~~~~~~~~L~~~~~~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t  212 (240)
T 3eu9_A          140 QNGMTPLMWAAYRTHSVDPTRLLLTFNVS------VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD-AQNIKGES  212 (240)
T ss_dssp             TTSCCHHHHHHHHCCSSTTHHHHHHTTCC------TTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CBCTTSCB
T ss_pred             CCCCcHHHHHHHhCChHHHHHHHHhcCCC------cchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCC
Confidence            788888888886655 7778888877764      344454 77888888888888888888888887765 66778888


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCC
Q 045083          314 PLYMAAANGSVKIVAKILQKCPSP  337 (556)
Q Consensus       314 ~L~~A~~~~~~~~v~~Ll~~~~~~  337 (556)
                      |||+|+++|+.+++++|++.++..
T Consensus       213 ~l~~A~~~~~~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          213 ALDLAKQRKNVWMINHLQEARQAK  236 (240)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHC---
T ss_pred             HHHHHHHcCcHHHHHHHHHhhhcc
Confidence            888888888888888888776654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=7.9e-37  Score=288.76  Aligned_cols=224  Identities=24%  Similarity=0.342  Sum_probs=142.4

Q ss_pred             cccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCH-HHHHHHHhcCC
Q 045083           77 QANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSV-DVVKILIKADP  155 (556)
Q Consensus        77 ~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~-~~v~~Ll~~~~  155 (556)
                      .+|..+.+||+.||..|+.++|++|++.++....+        ....++..+..|.||||.|+..++. .++++|++.|.
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~--------~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Ga   77 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLED--------AEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGL   77 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC------------------------------------------------CCC
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCccccc--------ccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCC
Confidence            45777889999999999999999999987653221        1122456778899999999987765 47888999998


Q ss_pred             CCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCC
Q 045083          156 HVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSAN  235 (556)
Q Consensus       156 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~  235 (556)
                      +++ ..|..|.||||+|+..|+.+++++|++.+++...      .+..|.||+|.|+..++.+++++|++.+.++ +.+|
T Consensus        78 dvn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~------~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d  149 (269)
T 4b93_B           78 GVN-VTSQDGSSPLHVAALHGRADLIPLLLKHGANAGA------RNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKD  149 (269)
T ss_dssp             CTT-CCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTC------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCC
T ss_pred             CCC-CcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCc------cCCCCCCccccccccChHHHHHHHHHCCCCC-CCCC
Confidence            887 6778888888888888888888888888765432      6777788888888888888888888777774 6667


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHH
Q 045083          236 RNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPL  315 (556)
Q Consensus       236 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L  315 (556)
                      .+|+||||+|+..|+.+++++|++.+.+      ++.++..|+||||+|+..|+.+++++|+++|++++ .+|..|+|||
T Consensus       150 ~~g~TpL~~A~~~g~~~~v~~Ll~~gad------vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~-~~d~~G~TpL  222 (269)
T 4b93_B          150 LSGNTPLIYACSGGHHELVALLLQHGAS------INASNNKGNTALHEAVIEKHVFVVELLLLHGASVQ-VLNKRQRTAV  222 (269)
T ss_dssp             TTCCCHHHHHHHTTCGGGHHHHHHTTCC------TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCSG
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHCCCC------CCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHH
Confidence            7777777777777777777777777653      45666777777777777777777777777777764 5677777777


Q ss_pred             HHHHHcCC
Q 045083          316 YMAAANGS  323 (556)
Q Consensus       316 ~~A~~~~~  323 (556)
                      |+|+++++
T Consensus       223 ~~A~~~~~  230 (269)
T 4b93_B          223 DCAEQNSK  230 (269)
T ss_dssp             GGSCTTCH
T ss_pred             HHHHhCCc
Confidence            77766554

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.8e-35  Score=272.31  Aligned_cols=220  Identities=19%  Similarity=0.228  Sum_probs=194.0

Q ss_pred             CChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcC--CCCcc
Q 045083           82 GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKAD--PHVSY  159 (556)
Q Consensus        82 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~--~~~~~  159 (556)
                      |+||||+|+..|+.+++++|++.+...               ....|..|.||||+|+..|+.+++++|++.+  .++..
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~---------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~   66 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSL---------------LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD   66 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGG---------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGG
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccc---------------cccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccc
Confidence            789999999999999999999987652               2347899999999999999999999999999  55554


Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHHhC--CChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCC
Q 045083          160 SANRNSETLLYMAVANGSAEIVAEILQNC--PQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRN  237 (556)
Q Consensus       160 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~  237 (556)
                      ..+..|.||||+|+..|+.+++++|++++  .+.      +..+..|.||||.|+..|+.+++++|++++.+. +.+|.+
T Consensus        67 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~  139 (228)
T 2dzn_A           67 YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL------NKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKF  139 (228)
T ss_dssp             CCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCT------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTT
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc------ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCC
Confidence            47889999999999999999999999987  432      237889999999999999999999999999885 788999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHH-hcCCCCCccccCCCCCHHH
Q 045083          238 SETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILI-EADPHVPYSANRNSETPLY  316 (556)
Q Consensus       238 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll-~~~~~~~~~~~~~g~t~L~  316 (556)
                      |.||||+|+..|+.+++++|++.+..     .++.+|..|+||||+|+..|+.+++++|+ +.|++++ .+|..|+||||
T Consensus       140 g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~-~~~~~g~t~l~  213 (228)
T 2dzn_A          140 NQIPLHRAASVGSLKLIELLCGLGKS-----AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD-LVDNKGAKAED  213 (228)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHTTTCC-----CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSC-CBCTTSCBGGG
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCcc-----cccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCC-ccCCCCCcHHH
Confidence            99999999999999999999999832     35678899999999999999999999999 8899976 78999999999


Q ss_pred             HHHHcCCHHHHHHHHh
Q 045083          317 MAAANGSVKIVAKILQ  332 (556)
Q Consensus       317 ~A~~~~~~~~v~~Ll~  332 (556)
                      +|+..+   ++++|++
T Consensus       214 ~A~~~~---~~~~l~~  226 (228)
T 2dzn_A          214 VALNEQ---VKKFFLN  226 (228)
T ss_dssp             GCSSTT---HHHHHHT
T ss_pred             HHHHHH---HHHHHHh
Confidence            997654   4555443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.7e-34  Score=269.15  Aligned_cols=230  Identities=18%  Similarity=0.213  Sum_probs=208.7

Q ss_pred             hhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCC
Q 045083          126 MTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQN  205 (556)
Q Consensus       126 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~  205 (556)
                      ..|..|.||||.|+..|+.+++++|++.+.++. ..+..|.||||+|+..|+.+++++|+++++.....     .+..|.
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-----~~~~~~   77 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVR-QPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQL-----GGDLNS   77 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-----BTTTTB
T ss_pred             ccccccchHHHHHHHcCChHHHHHHHHcCCCcC-CCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhh-----cCCcCC
Confidence            457889999999999999999999999999987 77889999999999999999999999998765432     456699


Q ss_pred             cHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHH
Q 045083          206 TPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAV  285 (556)
Q Consensus       206 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~  285 (556)
                      ||||.|+..|+.+++++|++.+.+. +..+..|.||||+|+..|+.+++++|++.+.+      ++.++..|.||||+|+
T Consensus        78 t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~------~~~~~~~g~t~l~~a~  150 (240)
T 3eu9_A           78 TPLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD------VDMMDQNGMTPLMWAA  150 (240)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHH
T ss_pred             ChhHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC------ccccCCCCCcHHHHHH
Confidence            9999999999999999999999885 77899999999999999999999999999874      5678899999999999


Q ss_pred             hcCC-HHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHHHHH
Q 045083          286 RLRS-VDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVL  364 (556)
Q Consensus       286 ~~g~-~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~~~  364 (556)
                      ..++ .+++++|++.|++++...+..|.||||+|+.+|+.+++++|+++|++++.+|..|+||||+|+..++.++++.++
T Consensus       151 ~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~  230 (240)
T 3eu9_A          151 YRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQ  230 (240)
T ss_dssp             HHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred             HhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            7766 899999999999987443348999999999999999999999999999999999999999999999999999887


Q ss_pred             HhhC
Q 045083          365 IVRG  368 (556)
Q Consensus       365 ~~~~  368 (556)
                      ....
T Consensus       231 ~~~~  234 (240)
T 3eu9_A          231 EARQ  234 (240)
T ss_dssp             HHC-
T ss_pred             Hhhh
Confidence            6654

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=2.7e-35  Score=284.38  Aligned_cols=250  Identities=20%  Similarity=0.197  Sum_probs=210.6

Q ss_pred             HHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCc
Q 045083           88 LAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSET  167 (556)
Q Consensus        88 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t  167 (556)
                      .++..++.+.++.++..............       ....+..|.||||.|+..|+.+++++|++.|++++ ..+..|.|
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t   75 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRK-------KTKVKFDDGAVFLAACSSGDTEEVLRLLERGADIN-YANVDGLT   75 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCS-------CCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTT-CBCTTCCB
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCc-------ccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCC
Confidence            46777888888888876554322111110       12234578899999999999999999999999987 67889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHH
Q 045083          168 LLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVA  247 (556)
Q Consensus       168 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  247 (556)
                      |||+|+..|+.+++++|++++.+..      ..+..|.||||.|+..|+.+++++|++++++. +..+.+|.||||+|+.
T Consensus        76 ~L~~A~~~g~~~~v~~Ll~~ga~~~------~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~  148 (299)
T 1s70_B           76 ALHQACIDDNVDMVKFLVENGANIN------QPDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEE  148 (299)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTT------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCS
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCC------CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHh
Confidence            9999999999999999999987643      37889999999999999999999999999985 7889999999999999


Q ss_pred             cCCHHHHHHHHHcCChhHHH--------------HHh-------hhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCcc
Q 045083          248 NGSAEIVAEILQNCPESAAR--------------QML-------EKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYS  306 (556)
Q Consensus       248 ~g~~~~v~~Ll~~~~~~~~~--------------~~~-------~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~  306 (556)
                      .++.++++.++.........              .++       ...+..|.||||+|+..|+.+++++|++.|++++ .
T Consensus       149 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~-~  227 (299)
T 1s70_B          149 EAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN-I  227 (299)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-C
T ss_pred             cchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC-C
Confidence            99999999888653321110              000       1245679999999999999999999999999986 7


Q ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHh
Q 045083          307 ANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVY  353 (556)
Q Consensus       307 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~  353 (556)
                      +|..|+||||+|+.+|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus       228 ~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~  274 (299)
T 1s70_B          228 KDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (299)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             cCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            89999999999999999999999999999999999999999999965

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-35  Score=280.18  Aligned_cols=217  Identities=20%  Similarity=0.215  Sum_probs=171.5

Q ss_pred             hhccCCCcHhHHHHhcCCHHHHHHHHhcCCCC-------cccccCCCCcHHHHHHHcCCH-HHHHHHHHhCCChhHHHHh
Q 045083          126 MTNEEQNTPLHEAVRLRSVDVVKILIKADPHV-------SYSANRNSETLLYMAVANGSA-EIVAEILQNCPQSAARQML  197 (556)
Q Consensus       126 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-------~~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~~~~~~~~~~~  197 (556)
                      .+|..+.+||+.|+..|+.++|++|++.+.+.       ....+..+.+||+.|+..+.. .+++.|++.+.+..     
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn-----   80 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVN-----   80 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTT-----
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCC-----
Confidence            46777889999999999999999999987653       224566789999999988775 48899999887643     


Q ss_pred             hhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCC
Q 045083          198 EKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQ  277 (556)
Q Consensus       198 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g  277 (556)
                       ..+.+|.||||+|+..|+.+++++|++.+++. +..+.+|.||+|+|+..++.++++.|++.+.+      ++.+|..|
T Consensus        81 -~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~------~n~~d~~g  152 (269)
T 4b93_B           81 -VTSQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAK------PNKKDLSG  152 (269)
T ss_dssp             -CCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC------SCCCCTTC
T ss_pred             -CcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCCC------CCCCCCCC
Confidence             37899999999999999999999999999985 78899999999999999999999999999874      57888999


Q ss_pred             CchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCC
Q 045083          278 NTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYP  356 (556)
Q Consensus       278 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~  356 (556)
                      +||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+.+|+.+++++|+++|++++.+|.+|+||||+|+..+.
T Consensus       153 ~TpL~~A~~~g~~~~v~~Ll~~gadvn-~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          153 NTPLIYACSGGHHELVALLLQHGASIN-ASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             CCHHHHHHHTTCGGGHHHHHHTTCCTT-CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCCC-ccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc
Confidence            999999999999999999999999986 789999999999999999999999999999999999999999999987553

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=4.4e-35  Score=280.04  Aligned_cols=228  Identities=20%  Similarity=0.236  Sum_probs=201.0

Q ss_pred             ccccccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhc
Q 045083           74 LLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKA  153 (556)
Q Consensus        74 ~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  153 (556)
                      .++.+|.+|.||||+|+..|+.++|++|+++|++.                +..  +|.||||+|+..|+.+++++|+++
T Consensus        23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~----------------~~~--~g~t~L~~A~~~g~~~~v~~Ll~~   84 (285)
T 3kea_A           23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK----------------NLL--ENEFPLHQAATLEDTKIVKILLFS   84 (285)
T ss_dssp             TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG----------------SCC--TTCCHHHHHTTSSSCHHHHHHHHT
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC----------------CCC--CCCCHHHHHHHcCCHHHHHHHHHC
Confidence            46889999999999999999999999999998763                233  599999999999999999999999


Q ss_pred             CCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCC-CcHhHHHHhcCCHHHHHHHHhcCCCCCc
Q 045083          154 DPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQ-NTPLHEAVRLRRVDVVKILIKADPHVPY  232 (556)
Q Consensus       154 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g-~t~L~~A~~~~~~~~v~~Ll~~~~~~~~  232 (556)
                      |++++ ..+..|.||||+|+..|+.+++++|++++.+..      ..+..| .||||.|+..|+.+++++|++++++...
T Consensus        85 ga~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~------~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  157 (285)
T 3kea_A           85 GLDDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM------FYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD  157 (285)
T ss_dssp             TCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGG------GCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC
T ss_pred             CCCCC-CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC------ccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc
Confidence            99987 678899999999999999999999999987643      378888 8999999999999999999999987521


Q ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCch-hHHHHhcCCHHHHHHHHhcCCCCCccccCCC
Q 045083          233 SANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTP-LHEAVRLRSVDVAKILIEADPHVPYSANRNS  311 (556)
Q Consensus       233 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~-Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g  311 (556)
                        ...|.||||+|+..|+.+++++|++++.+      ++.+|..|+|| ||+|+..|+.+++++|+++|++++ ..|   
T Consensus       158 --~~~g~t~L~~A~~~g~~~~v~~Ll~~gad------~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~-~~~---  225 (285)
T 3kea_A          158 --LAILLSCIHITIKNGHVDMMILLLDYMTS------TNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY-SAN---  225 (285)
T ss_dssp             --CSTHHHHHHHHHHTTCHHHHHHHHHHHHH------TCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCST-TTT---
T ss_pred             --ccCCccHHHHHHHcChHHHHHHHHHcCCC------CCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC-CCC---
Confidence              23899999999999999999999998753      67888999998 999999999999999999999976 444   


Q ss_pred             CCHHHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q 045083          312 ETPLYMAAANGSVKIVAKILQKCPSPAHEGP  342 (556)
Q Consensus       312 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~  342 (556)
                          +.|+..|+.+++++|+++|.+++..+.
T Consensus       226 ----~~a~~~~~~~iv~~Ll~~g~~~~~~~~  252 (285)
T 3kea_A          226 ----LENVLLDDAEIAKMIIEKHVEYKSDSY  252 (285)
T ss_dssp             ----GGGGTTTCHHHHHHHHHHHHHHTTCTT
T ss_pred             ----hhhhhcCCHHHHHHHHHcCCCCCCccc
Confidence                366789999999999999987665443

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.3e-34  Score=266.90  Aligned_cols=216  Identities=19%  Similarity=0.261  Sum_probs=191.5

Q ss_pred             cCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHH
Q 045083          141 LRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVV  220 (556)
Q Consensus       141 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v  220 (556)
                      +|+.+++++|+++++++....|..|.||||+|+..|+.+++++|++++.+...      .+..|.||||.|+..|+.+++
T Consensus         1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~~~~~~~~v   74 (223)
T 2f8y_A            1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI------QDNMGRTPLHAAVSADAQGVF   74 (223)
T ss_dssp             ----CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHTTCHHHH
T ss_pred             CCcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCC------cCCCCCCHHHHHHHcCCHHHH
Confidence            36788889999999998877788999999999999999999999998866432      788999999999999999999


Q ss_pred             HHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcC
Q 045083          221 KILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEAD  300 (556)
Q Consensus       221 ~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~  300 (556)
                      ++|++.++...+..+..|.||||+|+..|+.+++++|++.+.+      ++..|..|+||||+|+..|+.+++++|+++|
T Consensus        75 ~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  148 (223)
T 2f8y_A           75 QILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD------VNAVDDLGKSALHWAAAVNNVDAAVVLLKNG  148 (223)
T ss_dssp             HHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC------TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC------CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence            9999998866688899999999999999999999999998874      5677889999999999999999999999999


Q ss_pred             CCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHHHHHHhhCC
Q 045083          301 PHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRGT  369 (556)
Q Consensus       301 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~~~~~~~~  369 (556)
                      ++++ .+|..|+||||+|+++|+.+++++|+++|++++.+|..|+||+|+|+..++.++++.++..+..
T Consensus       149 ~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~  216 (223)
T 2f8y_A          149 ANKD-MQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV  216 (223)
T ss_dssp             CCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred             CCCC-CcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence            9876 7788999999999999999999999999999999999999999999999999999888766543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=3.2e-36  Score=290.89  Aligned_cols=276  Identities=18%  Similarity=0.212  Sum_probs=224.5

Q ss_pred             HHHhcCCchHHHHhhhhhccccc---------ccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCcccccc
Q 045083            7 EAAAKGDIEPFREIARDELESIV---------TDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQ   77 (556)
Q Consensus         7 ~A~~~g~~~~v~~Ll~~g~~~~~---------~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   77 (556)
                      .+++.+..+.++.++..+.+...         .+..|.||||.|+..|+.           +++++|++.    +..++.
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~-----------~~v~~Ll~~----g~~~~~   68 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDT-----------EEVLRLLER----GADINY   68 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCH-----------HHHHHHHHH----CCCTTC
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCH-----------HHHHHHHHc----CCCCcc
Confidence            46788888888888887543321         234678999999999999           999999553    456788


Q ss_pred             ccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCC
Q 045083           78 ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHV  157 (556)
Q Consensus        78 ~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~  157 (556)
                      .|..|.||||+|+..|+.+++++|+++|++                ++..|..|.||||+|+..|+.+++++|+++|+++
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~----------------~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  132 (299)
T 1s70_B           69 ANVDGLTALHQACIDDNVDMVKFLVENGAN----------------INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV  132 (299)
T ss_dssp             BCTTCCBHHHHHHHTTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----------------CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Confidence            899999999999999999999999999887                4567889999999999999999999999999998


Q ss_pred             cccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCC
Q 045083          158 SYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRN  237 (556)
Q Consensus       158 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~  237 (556)
                      . ..+..|.||||+|+..|+.+++++++.........     .+..+.++++        ..+..++..+.......+..
T Consensus       133 ~-~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~-----~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~  198 (299)
T 1s70_B          133 G-AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEA-----ARKEEERIML--------RDARQWLNSGHINDVRHAKS  198 (299)
T ss_dssp             T-CCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHH-----HHHHHHHHHH--------HHHHHHHHHTCCCCCCCTTT
T ss_pred             C-CcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchh-----hhhhhhhHHH--------HHHHHHHhccCcchhhhcCC
Confidence            7 77889999999999999999999988765433221     1111222222        33455666666666677889


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHH
Q 045083          238 SETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYM  317 (556)
Q Consensus       238 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~  317 (556)
                      |.||||+|+..|+.+++++|++.+.+      ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|+||||+
T Consensus       199 g~t~L~~A~~~g~~~~v~~Ll~~g~d------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~-~~d~~g~t~l~~  271 (299)
T 1s70_B          199 GGTALHVAAAKGYTEVLKLLIQARYD------VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME-AVNKVGQTAFDV  271 (299)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTTTCC------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCTTTS
T ss_pred             CCCHHHHHHHCCcHHHHHHHHHcCCC------CCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHH
Confidence            99999999999999999999999874      57888999999999999999999999999999986 789999999999


Q ss_pred             HHHcCCHHHHHHHHhcCC
Q 045083          318 AAANGSVKIVAKILQKCP  335 (556)
Q Consensus       318 A~~~~~~~~v~~Ll~~~~  335 (556)
                      |++.. .+.++.++++..
T Consensus       272 A~~~~-~~~l~~l~~~~~  288 (299)
T 1s70_B          272 ADEDI-LGYLEELQKKQN  288 (299)
T ss_dssp             CCSGG-GHHHHHHHHHTT
T ss_pred             HHHHH-HHHHHHHHHHHh
Confidence            97644 455555565543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=7.4e-36  Score=285.40  Aligned_cols=241  Identities=19%  Similarity=0.214  Sum_probs=209.6

Q ss_pred             HHhcCCchHHHHhhhhhcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCCCChHHH
Q 045083            8 AAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKGDSPLH   87 (556)
Q Consensus         8 A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpLh   87 (556)
                      +++..+.+.++.++..+ +++..|.+|.||||+|+..|+.           +++++|++   . +..++..  +|.||||
T Consensus         6 ~i~~~~~~~v~~lL~~~-~~~~~d~~g~t~L~~A~~~g~~-----------~~v~~Ll~---~-g~~~~~~--~g~t~L~   67 (285)
T 3kea_A            6 RINTWKSKQLKSFLSSK-DTFKADVHGHSASYYAIADNNV-----------RLVCTLLN---A-GALKNLL--ENEFPLH   67 (285)
T ss_dssp             TGGGCCHHHHHHHHHST-TTTCCCTTSCCHHHHHHHTTCH-----------HHHHHHHH---T-TGGGSCC--TTCCHHH
T ss_pred             HHHhcCHHHHHHHHHhC-CCCccCCCCCCHHHHHHHcCCH-----------HHHHHHHh---C-CCCCCCC--CCCCHHH
Confidence            35667777777777765 5788999999999999999999           99999955   4 4445554  5999999


Q ss_pred             HHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCC-C
Q 045083           88 LAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNS-E  166 (556)
Q Consensus        88 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-~  166 (556)
                      +|+..|+.+++++|+++|++                ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..| .
T Consensus        68 ~A~~~g~~~~v~~Ll~~ga~----------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~~  130 (285)
T 3kea_A           68 QAATLEDTKIVKILLFSGLD----------------DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM-FYGKTGWK  130 (285)
T ss_dssp             HHTTSSSCHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGG-GCSSSGGG
T ss_pred             HHHHcCCHHHHHHHHHCCCC----------------CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC-ccCCCCCC
Confidence            99999999999999999987                45678999999999999999999999999999987 677778 8


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCH-HHHH
Q 045083          167 TLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETP-LYMA  245 (556)
Q Consensus       167 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~-L~~A  245 (556)
                      ||||+|+..|+.+++++|+++++...       ....|.||||.|+..|+.+++++|+++++++ +.+|..|+|| ||+|
T Consensus       131 t~L~~A~~~~~~~~v~~Ll~~g~~~~-------~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-n~~~~~g~t~~L~~A  202 (285)
T 3kea_A          131 TSFYHAVMLNDVSIVSYFLSEIPSTF-------DLAILLSCIHITIKNGHVDMMILLLDYMTST-NTNNSLLFIPDIKLA  202 (285)
T ss_dssp             SHHHHHHHTTCHHHHHHHHTTSCTTC-------CCSTHHHHHHHHHHTTCHHHHHHHHHHHHHT-CTTCCCBCCTTHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCccc-------cccCCccHHHHHHHcChHHHHHHHHHcCCCC-CcccCCCCChHHHHH
Confidence            99999999999999999999987642       2238999999999999999999999999885 7889999998 9999


Q ss_pred             HHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCC
Q 045083          246 VANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVP  304 (556)
Q Consensus       246 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  304 (556)
                      +..|+.+++++|++++.+      ++..|       +.|+..|+.+++++|+++|.+..
T Consensus       203 ~~~~~~~~v~~Ll~~gad------~~~~~-------~~a~~~~~~~iv~~Ll~~g~~~~  248 (285)
T 3kea_A          203 IDNKDIEMLQALFKYDIN------IYSAN-------LENVLLDDAEIAKMIIEKHVEYK  248 (285)
T ss_dssp             HHHTCHHHHHHHTTSCBC------STTTT-------GGGGTTTCHHHHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHcCCC------CCCCC-------hhhhhcCCHHHHHHHHHcCCCCC
Confidence            999999999999999975      23333       36788999999999999998764

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=8.1e-34  Score=261.50  Aligned_cols=212  Identities=20%  Similarity=0.233  Sum_probs=115.7

Q ss_pred             chHHHHHHHHhhCccccccccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHH
Q 045083           59 ESTEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEA  138 (556)
Q Consensus        59 ~~~~~l~~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A  138 (556)
                      +++++|   ++.+.......|..|.||||+|+..|+.+++++|++++.+                ++..|..|.||||+|
T Consensus         5 ~~i~~L---l~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A   65 (223)
T 2f8y_A            5 AVISDF---IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD----------------ANIQDNMGRTPLHAA   65 (223)
T ss_dssp             CCEETT---EETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHH
T ss_pred             HHHHHH---HHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCC----------------CCCcCCCCCCHHHHH
Confidence            555555   4444443344456666666666666666666666665554                234455566666666


Q ss_pred             HhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHH
Q 045083          139 VRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVD  218 (556)
Q Consensus       139 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  218 (556)
                      +..|+.+++++|++.++......+..|.||||+|+..|+.+++++|+++                               
T Consensus        66 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-------------------------------  114 (223)
T 2f8y_A           66 VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-------------------------------  114 (223)
T ss_dssp             HHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-------------------------------
T ss_pred             HHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHc-------------------------------
Confidence            6666666666666655533224444555555555555555555555554                               


Q ss_pred             HHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHh
Q 045083          219 VVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE  298 (556)
Q Consensus       219 ~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  298 (556)
                              +.+. +..|.+|.||||+|+..|+.+++++|++.+.+      ++.+|..|.||||+|+..|+.+++++|++
T Consensus       115 --------g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  179 (223)
T 2f8y_A          115 --------HADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN------KDMQNNREETPLFLAAREGSYETAKVLLD  179 (223)
T ss_dssp             --------TCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             --------CCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC------CCCcCCCCcCHHHHHHHcCCHHHHHHHHH
Confidence                    4442 34445555555555555555555555555442      33445555555555555555555555555


Q ss_pred             cCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 045083          299 ADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPS  336 (556)
Q Consensus       299 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~  336 (556)
                      +|++.+ .+|..|.||||+|+++++.+++++|+++|+.
T Consensus       180 ~ga~~~-~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~  216 (223)
T 2f8y_A          180 HFANRD-ITDHMDRLPRDIAQERMHHDIVRLLDEYNLV  216 (223)
T ss_dssp             TTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred             cCCCCc-cccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence            555543 4455556666666666666666665555543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=3.7e-35  Score=286.25  Aligned_cols=273  Identities=13%  Similarity=0.063  Sum_probs=201.8

Q ss_pred             chHHHHHHHHhhCccccccccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHH-HHHHhhhccCCCcHhHH
Q 045083           59 ESTEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAA-RQILKMTNEEQNTPLHE  137 (556)
Q Consensus        59 ~~~~~l~~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~-~~~l~~~~~~g~t~Lh~  137 (556)
                      ++++++   ++. +..++..+..|.|+++     |+.++|+.|+++|.+............. ..--........+.+|.
T Consensus        33 dlv~~l---l~~-ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  103 (327)
T 1sw6_A           33 DLTSDF---LSS-PLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHV  103 (327)
T ss_dssp             TCCCST---TTS-SCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------
T ss_pred             chHHHH---hhC-CcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHH
Confidence            677777   333 6778889999999988     9999999999999774321000000000 00000011122344688


Q ss_pred             HHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCC-
Q 045083          138 AVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRR-  216 (556)
Q Consensus       138 A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-  216 (556)
                      |+..+..+++++|++.+.+++...|..|.||||+|+..|+.+++++|++++++..      ..+..|.||||+|+..|+ 
T Consensus       104 a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n------~~d~~g~TpLh~A~~~g~~  177 (327)
T 1sw6_A          104 SFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL------YGDNMGESCLVKAVKSVNN  177 (327)
T ss_dssp             CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT------BCCTTCCCHHHHHHHSSHH
T ss_pred             HHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC------CcCCCCCCHHHHHHHhccc
Confidence            8988999999999999999985489999999999999999999999999997754      378999999999999998 


Q ss_pred             --HHHHHHHHhcCCCCCccCCCCCCCHHHHHHH----cCCHHHHHHHHHcCChhHH--------------HHHhhhcCCC
Q 045083          217 --VDVVKILIKADPHVPYSANRNSETPLYMAVA----NGSAEIVAEILQNCPESAA--------------RQMLEKTNEE  276 (556)
Q Consensus       217 --~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~----~g~~~~v~~Ll~~~~~~~~--------------~~~~~~~~~~  276 (556)
                        .++++.|++.+....+.+|.+|+||||+|+.    .|+.++++.|++.+.....              ...++.++..
T Consensus       178 ~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~  257 (327)
T 1sw6_A          178 YDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE  257 (327)
T ss_dssp             HHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC--------------
T ss_pred             ccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccccccc
Confidence              6778888877644467899999999999999    8999999999987421100              1135677899


Q ss_pred             CCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcC
Q 045083          277 QNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTY  355 (556)
Q Consensus       277 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~  355 (556)
                      |.||||.|+.      +++|++++.   +.+|..|+||||+|+++|+.+++++|+++|++++.+|..|+||||+|++.|
T Consensus       258 g~t~L~~a~~------~~~Ll~~~~---n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          258 RKDSILENLD------LKWIIANML---NAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             --CHHHHHCS------HHHHHHHTT---TCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             CCChhHHHHH------HHHHHHhCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence            9999999996      999999853   367899999999999999999999999999999999999999999998653

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=7.9e-35  Score=283.94  Aligned_cols=258  Identities=16%  Similarity=0.166  Sum_probs=200.6

Q ss_pred             hcCCchHHHHhhhhhcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccc--c-c----------
Q 045083           10 AKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSL--L-F----------   76 (556)
Q Consensus        10 ~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~-~----------   76 (556)
                      .....+++++|+++|++++..|..|.++++     |+.           ++++.|++.-.. +..  + .          
T Consensus        28 ~~~~~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~-----------~~v~~Ll~~g~~-~~~~~~~~a~~~~~~~~~   90 (327)
T 1sw6_A           28 ITFTHDLTSDFLSSPLKIMKALPSPVVNDN-----EQK-----------MKLEAFLQRLLF-PEIQEMPTSLNNDSSNRN   90 (327)
T ss_dssp             EECCTTCCCSTTTSSCCCEECBCCCCCCCH-----HHH-----------HHHHHHHHHHHC-------------------
T ss_pred             hhhcCchHHHHhhCCcccccCCCCCCcccC-----chh-----------HHHHHHHHhccC-CccccchHhhhccccccc
Confidence            345667899999999999999999999977     999           999999764211 111  0 0          


Q ss_pred             -cccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhh-hccCCCcHhHHHHhcCCHHHHHHHHhcC
Q 045083           77 -QANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKM-TNEEQNTPLHEAVRLRSVDVVKILIKAD  154 (556)
Q Consensus        77 -~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~-~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~  154 (556)
                       .......+.+|+|+..+..++++.|++.+.+                ++. +|..|.||||+|+..|+.+++++|+++|
T Consensus        91 ~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~d----------------vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~G  154 (327)
T 1sw6_A           91 SEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLN----------------LNIPVDEHGNTPLHWLTSIANLELVKHLVKHG  154 (327)
T ss_dssp             -------------CHHHHHHHHHHHCTTSCCC----------------SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             ccccCCccchhHHHHHhhHHHHHHHHHhcCCC----------------cccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence             0111222345888888889999999988877                456 7899999999999999999999999999


Q ss_pred             CCCcccccCCCCcHHHHHHHcCC---HHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHh----cCCHHHHHHHHhc-
Q 045083          155 PHVSYSANRNSETLLYMAVANGS---AEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVR----LRRVDVVKILIKA-  226 (556)
Q Consensus       155 ~~~~~~~~~~g~t~L~~A~~~g~---~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~-  226 (556)
                      ++++ ..|..|.||||+|+..|+   .++++.|++.+...     ++..+..|.||||+|+.    .|+.+++++|++. 
T Consensus       155 ad~n-~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~-----~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~  228 (327)
T 1sw6_A          155 SNRL-YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC-----LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDIL  228 (327)
T ss_dssp             CCTT-BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG-----GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred             CCCC-CcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcc-----ccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHH
Confidence            9998 889999999999999998   67788888776332     34489999999999999    8999999999987 


Q ss_pred             -------------------CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhc
Q 045083          227 -------------------DPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRL  287 (556)
Q Consensus       227 -------------------~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~  287 (556)
                                         +.+ ++..+..|.||||.|+.      +++|++.+        ++.+|..|+||||+|+..
T Consensus       229 ~~~~~~~~~~~i~~~~~~~g~~-~~~~~~~g~t~L~~a~~------~~~Ll~~~--------~n~~d~~G~TpLh~A~~~  293 (327)
T 1sw6_A          229 MGWIVKKQNRPIQSGTNEKESK-PNDKNGERKDSILENLD------LKWIIANM--------LNAQDSNGDTCLNIAARL  293 (327)
T ss_dssp             HHHHHHGGGCCEEEC-----------------CHHHHHCS------HHHHHHHT--------TTCCCTTSCCHHHHHHHH
T ss_pred             HHHHhcccchHHHhhhhcccCC-cccccccCCChhHHHHH------HHHHHHhC--------CCCCCCCCCCHHHHHHHc
Confidence                               555 47789999999999995      88888874        468889999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcC
Q 045083          288 RSVDVAKILIEADPHVPYSANRNSETPLYMAAANG  322 (556)
Q Consensus       288 g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  322 (556)
                      |+.+++++|+++|++++ .+|..|+||||+|+++|
T Consensus       294 g~~~~v~~Ll~~Gad~~-~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          294 GNISIVDALLDYGADPF-IANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             CCHHHHHHHHHTTCCTT-CCCTTSCCGGGGTCC--
T ss_pred             CCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHhcC
Confidence            99999999999999986 88999999999998765

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=2e-34  Score=268.02  Aligned_cols=222  Identities=22%  Similarity=0.246  Sum_probs=138.9

Q ss_pred             cccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCC
Q 045083           77 QANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPH  156 (556)
Q Consensus        77 ~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  156 (556)
                      ..|.+|.||||+|+..|+.+++++|++.+.....+            ++..|..|.||||+|+..|+.+++++|+++|.+
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~   70 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAF------------LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD   70 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCC------------CCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHH------------hhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            46778888888888888888888888766532111            455677888888888888888888888888877


Q ss_pred             CcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCC
Q 045083          157 VSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANR  236 (556)
Q Consensus       157 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~  236 (556)
                      ++ ..+..|.||||+|+..|+.+++++|++.+......                                  ......+.
T Consensus        71 ~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~----------------------------------~~~~~~~~  115 (236)
T 1ikn_D           71 PE-LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH----------------------------------SILKATNY  115 (236)
T ss_dssp             SC-CCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSS----------------------------------CGGGCCCT
T ss_pred             CC-CcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHH----------------------------------HHhhccCC
Confidence            76 56777888888888888888888888776432110                                  11233444


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCC-CCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHH
Q 045083          237 NSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNE-EQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPL  315 (556)
Q Consensus       237 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~-~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L  315 (556)
                      .|.||||+|+..|+.+++++|++.+.+      ++.++. .|+||||+|+..|+.+++++|+++|++++ .+|..|+|||
T Consensus       116 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpl  188 (236)
T 1ikn_D          116 NGHTCLHLASIHGYLGIVELLVSLGAD------VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN-RVTYQGYSPY  188 (236)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHTCC------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC-CCCTTCCCGG
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cccCCCCCHH
Confidence            555555555555555555555555543      334444 56666666666666666666666666654 4566666666


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCC--CCCCCCCCcHHHHHH
Q 045083          316 YMAAANGSVKIVAKILQKCPSP--AHEGPDGKTALHAAV  352 (556)
Q Consensus       316 ~~A~~~~~~~~v~~Ll~~~~~~--~~~d~~g~t~L~~A~  352 (556)
                      |+|+.+|+.+++++|+++|++.  ...+.+|.||.+.+.
T Consensus       189 ~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~  227 (236)
T 1ikn_D          189 QLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTES  227 (236)
T ss_dssp             GGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC-
T ss_pred             HHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhc
Confidence            6666666666666666666653  355666666655443

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=3.7e-32  Score=251.98  Aligned_cols=198  Identities=23%  Similarity=0.283  Sum_probs=140.1

Q ss_pred             CCCcHhHHHHhcCCHHHHHHHHhc-CCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHh
Q 045083          130 EQNTPLHEAVRLRSVDVVKILIKA-DPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPL  208 (556)
Q Consensus       130 ~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L  208 (556)
                      .|+||||+|++.|+.+++++|++. +.+++ ..|..|.||||+|+..|+.+++++|++.+++.... ..+..+..|.|||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~~g~t~L   79 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVH-QRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE-PMTSELYEGQTAL   79 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGC-CCCSTTTTTCCHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcc-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccc-cccccCCCCcCHH
Confidence            489999999999999999999998 77776 77889999999999999999999999998653210 0122567899999


Q ss_pred             HHHHhcCCHHHHHHHHhcCCCCCccCCC-------------CCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCC
Q 045083          209 HEAVRLRRVDVVKILIKADPHVPYSANR-------------NSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNE  275 (556)
Q Consensus       209 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-------------~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~  275 (556)
                      |.|+..|+.+++++|++++.+. +..+.             +|.||||+|+..|+.+++++|++.+.+      ++.+|.
T Consensus        80 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------~~~~d~  152 (232)
T 2rfa_A           80 HIAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD------IRAQDS  152 (232)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC------TTCCCT
T ss_pred             HHHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC------CCCCCC
Confidence            9999999999999999998875 33333             466666666666666666666665543      345555


Q ss_pred             CCCchhHHHHhcCCHHHH----HHHHhcCCCCC-----ccccCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 045083          276 EQNTPLHEAVRLRSVDVA----KILIEADPHVP-----YSANRNSETPLYMAAANGSVKIVAKILQKCPS  336 (556)
Q Consensus       276 ~g~t~Lh~A~~~g~~~~v----~~Ll~~~~~~~-----~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~  336 (556)
                      .|+||||+|+..|+.+++    ++|++.|++..     +.+|..|+||||+|+++|+.+++++|+++|+.
T Consensus       153 ~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~  222 (232)
T 2rfa_A          153 LGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKH  222 (232)
T ss_dssp             TSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            666666666666665555    56666655542     34455566666666666666666666655544

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.2e-33  Score=262.70  Aligned_cols=167  Identities=22%  Similarity=0.225  Sum_probs=137.6

Q ss_pred             cCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCc
Q 045083          200 TNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNT  279 (556)
Q Consensus       200 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t  279 (556)
                      .+..|.||||.|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++.+.+......++..+..|.|
T Consensus        41 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t  119 (236)
T 1ikn_D           41 QNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT  119 (236)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCC
Confidence            5566667777777777777777777766663 566777778888888888888888888776532211135677889999


Q ss_pred             hhHHHHhcCCHHHHHHHHhcCCCCCccccC-CCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChh
Q 045083          280 PLHEAVRLRSVDVAKILIEADPHVPYSANR-NSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTD  358 (556)
Q Consensus       280 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~  358 (556)
                      |||+|+..|+.+++++|+++|++++ .++. .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+
T Consensus       120 ~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~  198 (236)
T 1ikn_D          120 CLHLASIHGYLGIVELLVSLGADVN-AQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTR  198 (236)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchH
Confidence            9999999999999999999999987 5565 9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhC
Q 045083          359 ILERVLIVRG  368 (556)
Q Consensus       359 ~~~~~~~~~~  368 (556)
                      +++.++..+.
T Consensus       199 ~~~~Ll~~ga  208 (236)
T 1ikn_D          199 IQQQLGQLTL  208 (236)
T ss_dssp             HHHHHHTTSC
T ss_pred             HHHHHHHcch
Confidence            9998876543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.98  E-value=3.6e-31  Score=239.52  Aligned_cols=192  Identities=22%  Similarity=0.249  Sum_probs=98.7

Q ss_pred             CCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHH
Q 045083          131 QNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHE  210 (556)
Q Consensus       131 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~  210 (556)
                      +.||||.|+..|+.+.++.|++.++......+..|.||||+|+..|+.+++++|++++.+...      .+..|.||||.
T Consensus         5 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------~~~~g~t~l~~   78 (201)
T 3hra_A            5 EVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL------QNSISDSPYLY   78 (201)
T ss_dssp             CTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC------CCTTSCCHHHH
T ss_pred             cccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC------CCCCCCCHHHH
Confidence            344444444444444444444433311113333444444444444444444444444333211      34444455555


Q ss_pred             HHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCC-
Q 045083          211 AVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRS-  289 (556)
Q Consensus       211 A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~-  289 (556)
                      |+..|+.+++++|++.+....+..+..|.||||+|+..|+.+++++|++.+..     .++.+|..|+||||+|+..++ 
T Consensus        79 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~~g~t~L~~A~~~~~~  153 (201)
T 3hra_A           79 AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE-----DIDFQNDFGYTALIEAVGLREG  153 (201)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCC-----CTTCCCTTSCCHHHHHHHSSCC
T ss_pred             HHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----CcCCCCCCCCCHHHHHHHhccc
Confidence            55555555555555333322345555556666666666666666666655521     134555666666666666665 


Q ss_pred             ----HHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 045083          290 ----VDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKC  334 (556)
Q Consensus       290 ----~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  334 (556)
                          .+++++|+++|++++ .+|..|+||||+|+++|+.+++++|+++|
T Consensus       154 ~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          154 NQLYQDIVKLLMENGADQS-IKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             SHHHHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             hhhHHHHHHHHHHCCCCCC-ccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence                666666666666654 55666666666666666666666666544

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.98  E-value=7.7e-31  Score=237.37  Aligned_cols=193  Identities=25%  Similarity=0.257  Sum_probs=174.0

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCH
Q 045083          162 NRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETP  241 (556)
Q Consensus       162 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~  241 (556)
                      +..+.||||.|+..|+.+.++.|+..++...     +..+..|.||||.|+..|+.+++++|++.+.++ +..+..|.||
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~-----~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~   75 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQV-----DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSP   75 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCT-----TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCC-----CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCH
Confidence            3468899999999999999999999886332     237889999999999999999999999999985 7889999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHc
Q 045083          242 LYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAAN  321 (556)
Q Consensus       242 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  321 (556)
                      ||+|+..|+.+++++|++.+..     .++..+..|.||||+|+..|+.+++++|++.|+...+.+|..|+||||+|+..
T Consensus        76 l~~A~~~~~~~~~~~Ll~~~~~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~  150 (201)
T 3hra_A           76 YLYAGAQGRTEILAYMLKHATP-----DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGL  150 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCC-----CTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHS
T ss_pred             HHHHHHcCCHHHHHHHHhccCc-----ccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHh
Confidence            9999999999999999965543     25678899999999999999999999999999443458899999999999999


Q ss_pred             CC-----HHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHHHHHH
Q 045083          322 GS-----VKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLI  365 (556)
Q Consensus       322 ~~-----~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~~~~  365 (556)
                      ++     .+++++|+++|++++.+|..|+||||+|+..++.++++.++.
T Consensus       151 ~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  199 (201)
T 3hra_A          151 REGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ  199 (201)
T ss_dssp             SCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             ccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHh
Confidence            98     999999999999999999999999999999999999988864

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=2.3e-32  Score=259.99  Aligned_cols=230  Identities=20%  Similarity=0.234  Sum_probs=149.1

Q ss_pred             cccccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhc---CCHHHHHHHH
Q 045083           75 LFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL---RSVDVVKILI  151 (556)
Q Consensus        75 ~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll  151 (556)
                      .+..|..|+||||+|+..|+.++|+.|++.+.+...++...        ....|..|.||||+|+..   |+.+++++|+
T Consensus         6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~--------~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll   77 (273)
T 2pnn_A            6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDS--------EFKDPETGKTCLLKAMLNLHNGQNDTIALLL   77 (273)
T ss_dssp             -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSG--------GGSCTTTCCCHHHHHHHSCBTTBCHHHHHHH
T ss_pred             CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCc--------ccccCcCCCCHHHHHHHHHhcCChHHHHHHH
Confidence            45678999999999999999999999998765433221100        113578899999999976   9999999999


Q ss_pred             hcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCC
Q 045083          152 KADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVP  231 (556)
Q Consensus       152 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~  231 (556)
                      +.+++...                     ++.++.....        ..+..|.||||+|+..|+.+++++|++.++++ 
T Consensus        78 ~~ga~~~~---------------------~~~~i~~~~~--------~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-  127 (273)
T 2pnn_A           78 DVARKTDS---------------------LKQFVNASYT--------DSYYKGQTALHIAIERRNMTLVTLLVENGADV-  127 (273)
T ss_dssp             HHHHHTTC---------------------HHHHHTCCCC--------STTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-
T ss_pred             Hhhccccc---------------------hhHHhhcccc--------cccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-
Confidence            98754321                     0111111100        02334444444444444444444444444443 


Q ss_pred             ccC--------------CCCCCCHHHHHHHcCCHHHHHHHHH---cCChhHHHHHhhhcCCCCCchhHHHHhcCC-----
Q 045083          232 YSA--------------NRNSETPLYMAVANGSAEIVAEILQ---NCPESAARQMLEKTNEEQNTPLHEAVRLRS-----  289 (556)
Q Consensus       232 ~~~--------------~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~-----  289 (556)
                      +..              +..|.||||+|+..|+.+++++|++   .+.+      ++.+|..|+||||+|+..|+     
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad------~~~~d~~g~tpLh~A~~~~~~~~~~  201 (273)
T 2pnn_A          128 QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD------ISARDSVGNTVLHALVEVADNTVDN  201 (273)
T ss_dssp             TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC------TTCCCTTSCCHHHHHHHHCCSCHHH
T ss_pred             CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC------ceeeCCCCCcHHHHHHHccCcchhH
Confidence            222              3478888888888888888888888   6653      56777888888888888887     


Q ss_pred             ----HHHHHHHHhcCCCCC------ccccCCCCCHHHHHHHcCCHHHHHHHHhcCC-CCCCCCCCCCcHH
Q 045083          290 ----VDVAKILIEADPHVP------YSANRNSETPLYMAAANGSVKIVAKILQKCP-SPAHEGPDGKTAL  348 (556)
Q Consensus       290 ----~~~v~~Ll~~~~~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~d~~g~t~L  348 (556)
                          .+++++|+++|++++      +.+|..|+||||+|+++|+.+++++|+++|+ ++......+.+|-
T Consensus       202 ~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~  271 (273)
T 2pnn_A          202 TKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHH  271 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-------------
T ss_pred             HHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhcc
Confidence                788888888887765      2478888999999999999999999888888 6777776666653

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=7.4e-31  Score=247.09  Aligned_cols=206  Identities=21%  Similarity=0.198  Sum_probs=128.8

Q ss_pred             CCChHHHHHHHhCcHH----HHHHHHHHhccCCchhhhhhhHHHHHHHhh----hccCCCcHhHHHHhc---CCHHHHHH
Q 045083           81 KGDSPLHLAAKKGHTA----IVEFLIVFANRQPIDLERGVESAARQILKM----TNEEQNTPLHEAVRL---RSVDVVKI  149 (556)
Q Consensus        81 ~g~tpLh~A~~~g~~~----iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~----~~~~g~t~Lh~A~~~---g~~~~v~~  149 (556)
                      .|+||||.|+..|+.+    ++++|++.+.+                ++.    .|..|.||||+|+..   |+.+++++
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~----------------i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~   64 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKY----------------LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP   64 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC----------------TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCC----------------cccccccCCCCCCCHHHHHHHccccchHHHHHH
Confidence            4789999999999997    55666667766                344    688999999999999   99999999


Q ss_pred             HHhcCCCCccc----------ccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHH
Q 045083          150 LIKADPHVSYS----------ANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDV  219 (556)
Q Consensus       150 Ll~~~~~~~~~----------~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  219 (556)
                      |++.+++....          .|..|.||||+|+..|+.+++++|++++++...      .+..+..+            
T Consensus        65 Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~------~~~~~~~~------------  126 (256)
T 2etb_A           65 LLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHL------RACGRFFQ------------  126 (256)
T ss_dssp             HHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC------CCCSGGGS------------
T ss_pred             HHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCc------cccccccc------------
Confidence            99987765421          234577777777777777777777776654322      23220000            


Q ss_pred             HHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHH---cCChhHHHHHhhhcCCCCCchhHHHHh--cCCHH---
Q 045083          220 VKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQ---NCPESAARQMLEKTNEEQNTPLHEAVR--LRSVD---  291 (556)
Q Consensus       220 v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~~~~~~~~~~~g~t~Lh~A~~--~g~~~---  291 (556)
                              .+ ....+..|.||||+|+..|+.+++++|++   .+.+      ++.+|..|+||||+|+.  .++.+   
T Consensus       127 --------~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~------~n~~d~~g~TpLh~A~~~~~~~~~~~~  191 (256)
T 2etb_A          127 --------KH-QGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS------LEATDSLGNTVLHALVMIADNSPENSA  191 (256)
T ss_dssp             --------CC-SSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC------TTCCCTTSCCHHHHHHHHCCSCHHHHH
T ss_pred             --------cc-ccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC------cCccCCCCCCHHHHHHHcccCCchhhH
Confidence                    00 01112225555555555555555555555   4442      34555555555555555  55555   


Q ss_pred             ----HHHHHHhcCCCCC------ccccCCCCCHHHHHHHcCCHHHHHHHHhcCC
Q 045083          292 ----VAKILIEADPHVP------YSANRNSETPLYMAAANGSVKIVAKILQKCP  335 (556)
Q Consensus       292 ----~v~~Ll~~~~~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~  335 (556)
                          ++++|+++|+++.      +.+|..|+||||+|++.|+.+++++|+++|+
T Consensus       192 ~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~  245 (256)
T 2etb_A          192 LVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREF  245 (256)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence                6666666555542      3455566666666666666666666665554

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=3.4e-31  Score=251.90  Aligned_cols=245  Identities=17%  Similarity=0.185  Sum_probs=167.8

Q ss_pred             hcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccc----cccCCCChHHHHHHHh---CcHH
Q 045083           24 ELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLF----QANAKGDSPLHLAAKK---GHTA   96 (556)
Q Consensus        24 g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~g~tpLh~A~~~---g~~~   96 (556)
                      +...+..|..|+||||.|+..|+.           ++++.|++.....+..++    ..|..|.||||+|+..   |+.+
T Consensus         3 ~a~~~~~d~~g~t~L~~A~~~g~~-----------~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~   71 (273)
T 2pnn_A            3 SAGEKPPRLYDRRSIFDAVAQSNC-----------QELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQND   71 (273)
T ss_dssp             --------CCCHHHHHHHHHTTCS-----------STTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCH
T ss_pred             cccCCCCCcccchHHHHHHHcCCH-----------HHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChH
Confidence            444556778999999999999999           999999775444444443    4588999999999987   9999


Q ss_pred             HHHHHHHHhccCCchhhhhhhHHHHHHHhh----hccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHH
Q 045083           97 IVEFLIVFANRQPIDLERGVESAARQILKM----TNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMA  172 (556)
Q Consensus        97 iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~----~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A  172 (556)
                      +|++|++.|++...         .+..++.    .|..|.||||+|+..|+.+++++|+++|++++ ..+..+..     
T Consensus        72 ~v~~Ll~~ga~~~~---------~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~-----  136 (273)
T 2pnn_A           72 TIALLLDVARKTDS---------LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ-AAANGDFF-----  136 (273)
T ss_dssp             HHHHHHHHHHHTTC---------HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBCSGGG-----
T ss_pred             HHHHHHHhhccccc---------hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC-cccccccc-----
Confidence            99999999876431         1112232    56789999999999999999999999998887 33432200     


Q ss_pred             HHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHh---cCCCCCccCCCCCCCHHHHHHHcC
Q 045083          173 VANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK---ADPHVPYSANRNSETPLYMAVANG  249 (556)
Q Consensus       173 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~---~~~~~~~~~~~~g~t~L~~A~~~g  249 (556)
                                   ... .      ....+..|.||||.|+..|+.+++++|++   .+.++ +.+|.+|+||||+|+..|
T Consensus       137 -------------~~~-~------~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~  195 (273)
T 2pnn_A          137 -------------KKT-K------GRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI-SARDSVGNTVLHALVEVA  195 (273)
T ss_dssp             -------------SSC-S------SSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHC
T ss_pred             -------------ccc-c------ccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCc-eeeCCCCCcHHHHHHHcc
Confidence                         000 0      01145578888888888888888888888   77774 678888888888888887


Q ss_pred             C---------HHHHHHHHHcCChhHH-HHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHH
Q 045083          250 S---------AEIVAEILQNCPESAA-RQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPL  315 (556)
Q Consensus       250 ~---------~~~v~~Ll~~~~~~~~-~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L  315 (556)
                      +         .+++++|++.+.+... ...++.+|..|+||||+|++.|+.+++++|+++|+..+......+.+|-
T Consensus       196 ~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~  271 (273)
T 2pnn_A          196 DNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHH  271 (273)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-------------
T ss_pred             CcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhcc
Confidence            7         7888888887754210 0011467788999999999999999999999988855545555555543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=9.1e-31  Score=246.49  Aligned_cols=211  Identities=18%  Similarity=0.148  Sum_probs=156.6

Q ss_pred             CCCcHhHHHHhcCCHH----HHHHHHhcCCCCcc---cccCCCCcHHHHHHHc---CCHHHHHHHHHhCCChhHHH-Hhh
Q 045083          130 EQNTPLHEAVRLRSVD----VVKILIKADPHVSY---SANRNSETLLYMAVAN---GSAEIVAEILQNCPQSAARQ-MLE  198 (556)
Q Consensus       130 ~g~t~Lh~A~~~g~~~----~v~~Ll~~~~~~~~---~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~-~~~  198 (556)
                      .|+||||.|+..|+.+    ++++|++.+.+++.   ..|..|.||||+|+..   |+.+++++|++.+.+..... .++
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            4789999999999997    66777778888873   3688899999999998   99999999998764321100 000


Q ss_pred             ----hcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcC
Q 045083          199 ----KTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTN  274 (556)
Q Consensus       199 ----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  274 (556)
                          ..+..|.||||.|+..|+.+++++|++.++++ +..+..+..+                    .      ..+..+
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~--------------------~------~~~~~~  133 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQ--------------------K------HQGTCF  133 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGS--------------------C------CSSSCC
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-Cccccccccc--------------------c------cccccc
Confidence                01234555555555555555555555554442 2333222110                    0      011223


Q ss_pred             CCCCchhHHHHhcCCHHHHHHHHh---cCCCCCccccCCCCCHHHHHHH--cCCHH-------HHHHHHhcCCCC-----
Q 045083          275 EEQNTPLHEAVRLRSVDVAKILIE---ADPHVPYSANRNSETPLYMAAA--NGSVK-------IVAKILQKCPSP-----  337 (556)
Q Consensus       275 ~~g~t~Lh~A~~~g~~~~v~~Ll~---~~~~~~~~~~~~g~t~L~~A~~--~~~~~-------~v~~Ll~~~~~~-----  337 (556)
                      ..|.||||+|+..|+.+++++|++   .|++++ .+|..|+||||+|+.  +++.+       ++++|+++|+++     
T Consensus       134 ~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n-~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~  212 (256)
T 2etb_A          134 YFGELPLSLAACTKQWDVVTYLLENPHQPASLE-ATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQ  212 (256)
T ss_dssp             CSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTT-CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhccccCCCcC-ccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccc
Confidence            349999999999999999999999   999986 789999999999999  88888       999999999998     


Q ss_pred             --CCCCCCCCcHHHHHHhcCChhHHHHHHHhhC
Q 045083          338 --AHEGPDGKTALHAAVYTYPTDILERVLIVRG  368 (556)
Q Consensus       338 --~~~d~~g~t~L~~A~~~~~~~~~~~~~~~~~  368 (556)
                        +.+|..|+||||+|+..++.++++.++....
T Consensus       213 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~  245 (256)
T 2etb_A          213 LEEISNHQGLTPLKLAAKEGKIEIFRHILQREF  245 (256)
T ss_dssp             GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence              8999999999999999999999999887654

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=3.8e-31  Score=230.47  Aligned_cols=158  Identities=25%  Similarity=0.372  Sum_probs=139.3

Q ss_pred             CHHHHHHHhcCCchHHHHhhhhhcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCC
Q 045083            2 DRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAK   81 (556)
Q Consensus         2 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   81 (556)
                      .++|+.||+.|+.++|+.|+++|++++.+|.+|+||||+|+..|+.           ++++.+++   . +.+++.+|.+
T Consensus         5 g~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~-----------~~~~~ll~---~-gad~~~~d~~   69 (169)
T 4gpm_A            5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHK-----------EVVKLLIS---K-GADVNAKDSD   69 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH-----------HHHHHHHH---T-TCCTTCCCTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCH-----------HHHHHHHh---c-ccchhhhccC
Confidence            4689999999999999999999999999999999999999999999           99999854   3 5667888999


Q ss_pred             CChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccc
Q 045083           82 GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSA  161 (556)
Q Consensus        82 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  161 (556)
                      |+||||+|+..|+.++|++|+++|++                ++.+|.+|+||||+|+..|+.+++++|++.|++++ ..
T Consensus        70 g~TpLh~A~~~g~~~~v~~Ll~~gad----------------vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~  132 (169)
T 4gpm_A           70 GRTPLHHAAENGHKEVVKLLISKGAD----------------VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN-TS  132 (169)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCcCC----------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-cc
Confidence            99999999999999999999999887                56688899999999999999999999999999887 77


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCCh
Q 045083          162 NRNSETLLYMAVANGSAEIVAEILQNCPQS  191 (556)
Q Consensus       162 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~  191 (556)
                      |..|.||||+|+..|+.+++++|++++++.
T Consensus       133 d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~i  162 (169)
T 4gpm_A          133 DSDGRTPLDLAREHGNEEVVKLLEKQGGWL  162 (169)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence            888999999999999999999999988764

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=2.2e-29  Score=219.30  Aligned_cols=156  Identities=26%  Similarity=0.427  Sum_probs=80.5

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc
Q 045083          169 LYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVAN  248 (556)
Q Consensus       169 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  248 (556)
                      |+.|++.|+.++|+.|++.+.+..      .++..|.||||.|+..++.+++++|++.+.++ +.+|.+|+||||+|+..
T Consensus         8 L~~Aa~~G~~~~v~~Ll~~Gadvn------~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~   80 (169)
T 4gpm_A            8 LIEAAENGNKDRVKDLIENGADVN------ASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAEN   80 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCC------CcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHc
Confidence            444444444444444444443321      13444444555555555555555555544442 44555555555555555


Q ss_pred             CCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHH
Q 045083          249 GSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVA  328 (556)
Q Consensus       249 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~  328 (556)
                      |+.+++++|++.+.+      ++.+|.+|+||||+|+..|+.+++++|++.|++++ .+|..|+||||+|+++|+.++++
T Consensus        81 g~~~~v~~Ll~~gad------vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~g~~~iv~  153 (169)
T 4gpm_A           81 GHKEVVKLLISKGAD------VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN-TSDSDGRTPLDLAREHGNEEVVK  153 (169)
T ss_dssp             TCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHHCcCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHH
Confidence            555555555555542      34555556666666666666666666666665554 45556666666666666666666


Q ss_pred             HHHhcCCCCC
Q 045083          329 KILQKCPSPA  338 (556)
Q Consensus       329 ~Ll~~~~~~~  338 (556)
                      +|+++|++++
T Consensus       154 ~Ll~~GA~ie  163 (169)
T 4gpm_A          154 LLEKQGGWLE  163 (169)
T ss_dssp             HHHTC-----
T ss_pred             HHHHCCCCcC
Confidence            6666665544

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=5.8e-30  Score=241.60  Aligned_cols=202  Identities=20%  Similarity=0.254  Sum_probs=138.5

Q ss_pred             ccCCCcHhHHHHhcCCHHHHHH----HHhcCCCCccc---ccCCCCcHHHHHH---HcCCHHHHHHHHHhCCChhHHHH-
Q 045083          128 NEEQNTPLHEAVRLRSVDVVKI----LIKADPHVSYS---ANRNSETLLYMAV---ANGSAEIVAEILQNCPQSAARQM-  196 (556)
Q Consensus       128 ~~~g~t~Lh~A~~~g~~~~v~~----Ll~~~~~~~~~---~~~~g~t~L~~A~---~~g~~~~v~~Ll~~~~~~~~~~~-  196 (556)
                      +..|+|+||.|++.|+.+.++.    |++.+.+++..   .+..|.||||+|+   ..|+.+++++|++.+.+...... 
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   81 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF   81 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence            5678999999999999995544    44488877632   2367999999999   67999999999998643211100 


Q ss_pred             ----hhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCC--------------CCCCCHHHHHHHcCCHHHHHHHH
Q 045083          197 ----LEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSAN--------------RNSETPLYMAVANGSAEIVAEIL  258 (556)
Q Consensus       197 ----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~--------------~~g~t~L~~A~~~g~~~~v~~Ll  258 (556)
                          +...+..|.||||.|+..|+.+++++|++.++++ +..+              ..|.||||+|+..|+.+++++|+
T Consensus        82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  160 (260)
T 3jxi_A           82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT  160 (260)
T ss_dssp             HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred             hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence                1113347778888888888888888888877774 4444              45677777777777777777777


Q ss_pred             H---cCChhHHHHHhhhcCCCCCchhHHHHhcCC---------HHHHHHHHhcCCCCC------ccccCCCCCHHHHHHH
Q 045083          259 Q---NCPESAARQMLEKTNEEQNTPLHEAVRLRS---------VDVAKILIEADPHVP------YSANRNSETPLYMAAA  320 (556)
Q Consensus       259 ~---~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~---------~~~v~~Ll~~~~~~~------~~~~~~g~t~L~~A~~  320 (556)
                      +   .+.+      ++.+|..|+||||+|+..++         .+++++|+++|++++      +.+|..|+||||+|++
T Consensus       161 ~~~~~ga~------~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~  234 (260)
T 3jxi_A          161 ENGHKQAD------LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAK  234 (260)
T ss_dssp             HCSSCCCC------TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             hccccCCC------CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHH
Confidence            6   5543      45566667777777776665         566777777666552      2456667777777777


Q ss_pred             cCCHHHHHHHHhcCCC
Q 045083          321 NGSVKIVAKILQKCPS  336 (556)
Q Consensus       321 ~~~~~~v~~Ll~~~~~  336 (556)
                      +|+.+++++|+++|++
T Consensus       235 ~g~~~~v~~Ll~~g~~  250 (260)
T 3jxi_A          235 TGKIGIFQHIIRREIA  250 (260)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHhCCC
Confidence            7777777776666543

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=3.1e-29  Score=236.60  Aligned_cols=206  Identities=16%  Similarity=0.146  Sum_probs=168.0

Q ss_pred             cCCCChHHHHHHHhCcHHHHHHHHH----HhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHH---hcCCHHHHHHHH
Q 045083           79 NAKGDSPLHLAAKKGHTAIVEFLIV----FANRQPIDLERGVESAARQILKMTNEEQNTPLHEAV---RLRSVDVVKILI  151 (556)
Q Consensus        79 ~~~g~tpLh~A~~~g~~~iv~~Ll~----~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~---~~g~~~~v~~Ll  151 (556)
                      +..|+||||.|++.|+.+.++.|++    .+.+.+..            -...|..|.||||+|+   +.|+.+++++|+
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~------------~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll   69 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDE------------EFREPSTGKTCLPKALLNLSAGRNDTIPILL   69 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSG------------GGSCTTTCCCHHHHHHTSCBTTBCTHHHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchh------------hhhccCCCCcHHHHHHHHhhcCCHHHHHHHH
Confidence            5678999999999999996555555    66653221            0123477999999999   789999999999


Q ss_pred             hcCCCCc----------ccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcC--------------CCCCcH
Q 045083          152 KADPHVS----------YSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTN--------------EEQNTP  207 (556)
Q Consensus       152 ~~~~~~~----------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~--------------~~g~t~  207 (556)
                      +.+.+..          ...|..|.||||+|+..|+.+++++|++++.+...      .+              ..|.||
T Consensus        70 ~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~------~~~~~~~~~~~~~~~~~~g~tp  143 (260)
T 3jxi_A           70 DIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHA------QARGRFFQPKDEGGYFYFGELP  143 (260)
T ss_dssp             HHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTC------CCEECCCSSSCCCCSCCSCSSH
T ss_pred             HhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCc------cccccccCcccccccccCCCCH
Confidence            9865421          13445899999999999999999999999876543      44              579999


Q ss_pred             hHHHHhcCCHHHHHHHHh---cCCCCCccCCCCCCCHHHHHHHcCC---------HHHHHHHHHcCChhHH-HHHhhhcC
Q 045083          208 LHEAVRLRRVDVVKILIK---ADPHVPYSANRNSETPLYMAVANGS---------AEIVAEILQNCPESAA-RQMLEKTN  274 (556)
Q Consensus       208 L~~A~~~~~~~~v~~Ll~---~~~~~~~~~~~~g~t~L~~A~~~g~---------~~~v~~Ll~~~~~~~~-~~~~~~~~  274 (556)
                      ||.|+..|+.+++++|++   .+.++ +.+|.+|+||||+|+..|+         .+++++|++.+.+... ....+.+|
T Consensus       144 L~~A~~~g~~~~v~~Ll~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d  222 (260)
T 3jxi_A          144 LSLAACTNQPHIVHYLTENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLN  222 (260)
T ss_dssp             HHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCC
T ss_pred             HHHHHHcCCHHHHHHHHhccccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhccc
Confidence            999999999999999999   88885 7899999999999999888         7999999998864200 00015688


Q ss_pred             CCCCchhHHHHhcCCHHHHHHHHhcCCCC
Q 045083          275 EEQNTPLHEAVRLRSVDVAKILIEADPHV  303 (556)
Q Consensus       275 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~  303 (556)
                      ..|+||||+|++.|+.+++++|+++|++.
T Consensus       223 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          223 NDGLSPLMMAAKTGKIGIFQHIIRREIAD  251 (260)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Confidence            99999999999999999999999998764

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=3.7e-28  Score=230.69  Aligned_cols=189  Identities=20%  Similarity=0.203  Sum_probs=123.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHH
Q 045083          167 TLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAV  246 (556)
Q Consensus       167 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~  246 (556)
                      +++|.|+..|+.+.++.+++...+    ..++..|.+|.||||+|+..|+.+++++|++.++...+..+..|.||||+|+
T Consensus        78 ~~l~~a~~~~~~~~~~~l~~~~~~----~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~  153 (276)
T 4hbd_A           78 SDAHPELVRRHLVTFRAMSARLLD----YVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTA  153 (276)
T ss_dssp             TTCCHHHHHHHHHHHHHHCHHHHH----HHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGG
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHh----hcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHH
Confidence            444555555555555555443211    1133356667777777777777777777777666334666677777777776


Q ss_pred             -----HcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHc
Q 045083          247 -----ANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAAN  321 (556)
Q Consensus       247 -----~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  321 (556)
                           ..++.++++.|++.+..      .+..+..|+||||+|+..|+.+++++|++.|++++ .+|..|+||||+|+.+
T Consensus       154 ~~~~~~~~~~~~v~~Ll~~g~~------~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n-~~d~~G~TpLh~A~~~  226 (276)
T 4hbd_A          154 LATLKTQDDIETVLQLFRLGNI------NAKASQAGQTALMLAVSHGRVDVVKALLACEADVN-VQDDDGSTALMCACEH  226 (276)
T ss_dssp             GCCCCSHHHHHHHHHHHHHSCT------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHH
T ss_pred             HHHhhhhhhHHHHHHHHHcCCC------ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CCCCCCCCHHHHHHHC
Confidence                 45666777777776642      34455667777777777777777777777777764 5667777777777777


Q ss_pred             CCHHHHHHHHh-cCCCCCCCCCCCCcHHHHHHhcCChhHHHHHHHh
Q 045083          322 GSVKIVAKILQ-KCPSPAHEGPDGKTALHAAVYTYPTDILERVLIV  366 (556)
Q Consensus       322 ~~~~~v~~Ll~-~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~~~~~  366 (556)
                      |+.+++++|++ .|++++.+|..|+||||+|+..++.++++.++..
T Consensus       227 g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  272 (276)
T 4hbd_A          227 GHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR  272 (276)
T ss_dssp             TCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            77777777777 6777777777777777777777777777666543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=7.8e-28  Score=211.67  Aligned_cols=169  Identities=20%  Similarity=0.216  Sum_probs=118.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 045083          166 ETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMA  245 (556)
Q Consensus       166 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A  245 (556)
                      .+|||.|+..|+.+++++|++.++...     +..+..|.||||.|+..|+.+++++|++.+.+. +..+..|.||||+|
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~-----~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A   76 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLV-----NKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLA   76 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGG-----GCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHH
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccc-----cCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHH
Confidence            456666666666666666666654422     225666777777777777777777777776663 56677777788887


Q ss_pred             HHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHH
Q 045083          246 VANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVK  325 (556)
Q Consensus       246 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~  325 (556)
                      +..|+.+++++|++.+.+      ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+.+|+.+
T Consensus        77 ~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~~~  149 (172)
T 3v30_A           77 STGGYTDIVGLLLERDVD------INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT-TEADSGYTPMDLAVALGYRK  149 (172)
T ss_dssp             HHTTCHHHHHHHHTTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHH
T ss_pred             HHCCCHHHHHHHHHcCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHhCcHH
Confidence            777778888877777753      45667778888888888888888888888887765 66778888888888888888


Q ss_pred             HHHHHHhcCCCCCCCCCCCCcH
Q 045083          326 IVAKILQKCPSPAHEGPDGKTA  347 (556)
Q Consensus       326 ~v~~Ll~~~~~~~~~d~~g~t~  347 (556)
                      ++++|+++++++..++..|.||
T Consensus       150 ~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          150 VQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHHHHHHHHHSCC-------
T ss_pred             HHHHHHHHHHHHhcccCCCCCC
Confidence            8888888887777777777766

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=2.2e-31  Score=261.70  Aligned_cols=288  Identities=13%  Similarity=0.060  Sum_probs=181.9

Q ss_pred             cCCchHHHHhhhhhcccccccCCCCeeEEeeec-cccccccccccccccchHHHHHHHHhhCccccccccCCCChHHHHH
Q 045083           11 KGDIEPFREIARDELESIVTDVMKNTVLHVNIM-RSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKGDSPLHLA   89 (556)
Q Consensus        11 ~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~-~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpLh~A   89 (556)
                      .+..+.+..+++++.+.+.  ..+.+++++|.. .++.           +..+++.+           .+.+++||||+|
T Consensus        44 ~~~~~~~~~~~~~~~~~~~--~~~ll~~~~a~~~~~~~-----------~~~~~l~~-----------~g~~~~T~Lh~A   99 (376)
T 2aja_A           44 LSYKEAIHIFLPGTKNMEQ--VRQLLCLYYAHYNRNAK-----------QLWSDAHK-----------KGIKSEVICFVA   99 (376)
T ss_dssp             SCHHHHHHHCCCCSSHHHH--HHHHHHHHHHHTTTTCT-----------THHHHHHH-----------HTCCHHHHHHHH
T ss_pred             ccHHHHHHHHhcCCCCHHH--HHHHHHHHHHHhcCCCH-----------HHHHHHHH-----------cCCCcCCHHHHH
Confidence            3344555555544333321  123345555544 3555           66666633           234556999999


Q ss_pred             HHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCc--ccccCCCCc
Q 045083           90 AKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVS--YSANRNSET  167 (556)
Q Consensus        90 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~g~t  167 (556)
                      |+.|+.++|++|++.++....             ....+..|.||||+|+..|+.+++++|+++|++..  ...+.+ .|
T Consensus       100 a~~G~~e~v~~Ll~~ga~~~~-------------~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~T  165 (376)
T 2aja_A          100 AITGCSSALDTLCLLLTSDEI-------------VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YH  165 (376)
T ss_dssp             HHHCCHHHHHHHTTC--CCSS-------------CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HH
T ss_pred             HHcCCHHHHHHHHHcCCcHHH-------------HHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CC
Confidence            999999999999988763210             11234567889999999999999999999997521  112223 89


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHH-hcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHH
Q 045083          168 LLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAV-RLRRVDVVKILIKADPHVPYSANRNSETPLYMAV  246 (556)
Q Consensus       168 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~  246 (556)
                      |||+|+..|+.+++++|++++++...    +..+..|.||||.|+ ..|+.+++++|++.+.        .|.||||+|+
T Consensus       166 pLh~Aa~~G~~eiv~~Ll~~ga~~~~----~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa  233 (376)
T 2aja_A          166 AFRLAAENGHLHVLNRLCELAPTEAT----AMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEF  233 (376)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSCGGGHH----HHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTT
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCccch----hccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHH
Confidence            99999999999999999999876432    014566889999999 9999999999998653        2789999999


Q ss_pred             HcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCC---------------------------HHHHHHHHhc
Q 045083          247 ANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRS---------------------------VDVAKILIEA  299 (556)
Q Consensus       247 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~---------------------------~~~v~~Ll~~  299 (556)
                      ..|+.+++++|++.+.+..      ..+    ++++.|+.+|+                           .+.+++|++.
T Consensus       234 ~~g~~evv~lL~~~ga~~~------~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~  303 (376)
T 2aja_A          234 EYGEKYVNPFIARHVNRLK------EMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSI  303 (376)
T ss_dssp             TTTTTTHHHHHHHHHHHHH------HHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTS
T ss_pred             HCCCHHHHHHHHhcCcccc------ccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhC
Confidence            9999999999999875422      111    24444444444                           3445555543


Q ss_pred             CCCC----CccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHH
Q 045083          300 DPHV----PYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE  361 (556)
Q Consensus       300 ~~~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~  361 (556)
                      +..-    .......+.||||+|+..|+.+++++|++.+   ..+|..|+|++.+|...|..++.+
T Consensus       304 ~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~---~v~~~~~~~~~~~~~~~~~~~~~~  366 (376)
T 2aja_A          304 PGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP---SVLALTKANNYYINETGGRLDLRA  366 (376)
T ss_dssp             TTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH---HHHHSCC-----------------
T ss_pred             hhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh---HHHHHHHHhccccccccccccHHH
Confidence            2100    0011235678899999999999999987653   566778888888888877776643

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=6.4e-28  Score=229.09  Aligned_cols=189  Identities=18%  Similarity=0.278  Sum_probs=111.8

Q ss_pred             CcHhHHHHhcCCHHHHHHHHhcCCC--CcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhH
Q 045083          132 NTPLHEAVRLRSVDVVKILIKADPH--VSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLH  209 (556)
Q Consensus       132 ~t~Lh~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~  209 (556)
                      .+++|.|+..|+.+.++.+++.+.+  ++ ..|..|.||||+|+..|+.+++++|++.++...     +..+..|.||||
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n-~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~-----~~~~~~g~tpL~  150 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLDYVVN-IADSNGNTALHYSVSHANFPVVQQLLDSGVCKV-----DKQNRAGYSPIM  150 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHHHHHT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCT-----TCCCTTSCCHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhhcCc-CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcC-----CCCCCCCCCHHH
Confidence            3444555555555554444443222  11 334445555555555555555555555443111     114555555555


Q ss_pred             HHH-----hcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHH
Q 045083          210 EAV-----RLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEA  284 (556)
Q Consensus       210 ~A~-----~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A  284 (556)
                      .|+     ..++.++++.|++.+.. ....+..|+||||+|+..|+.+++++|++.+.+      ++.+|..|+||||+|
T Consensus       151 ~a~~~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad------~n~~d~~G~TpLh~A  223 (276)
T 4hbd_A          151 LTALATLKTQDDIETVLQLFRLGNI-NAKASQAGQTALMLAVSHGRVDVVKALLACEAD------VNVQDDDGSTALMCA  223 (276)
T ss_dssp             HGGGCCCCSHHHHHHHHHHHHHSCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHH
T ss_pred             HHHHHHhhhhhhHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC------CCCCCCCCCCHHHHH
Confidence            555     34556666666666644 345566677777777777777777777776653      456667777777777


Q ss_pred             HhcCCHHHHHHHHh-cCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 045083          285 VRLRSVDVAKILIE-ADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKC  334 (556)
Q Consensus       285 ~~~g~~~~v~~Ll~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  334 (556)
                      +..|+.+++++|++ .|++++ .+|..|+||||+|+++|+.+++++|+++.
T Consensus       224 ~~~g~~~iv~~Ll~~~gad~~-~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          224 CEHGHKEIAGLLLAVPSCDIS-LTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHTCHHHHHHHHTSTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHCCCHHHHHHHHhcCCCCCc-CcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            77777777777777 666654 56777777777777777777777776654

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=1e-27  Score=215.03  Aligned_cols=163  Identities=20%  Similarity=0.230  Sum_probs=125.6

Q ss_pred             ccccccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhc
Q 045083           74 LLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKA  153 (556)
Q Consensus        74 ~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  153 (556)
                      ..+.+|..|.||||+|+..|+.+++++|++.+.+                ++..|..|.||||+|+..|+.+++++|++.
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   90 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDK----------------LEDKDIEGSTALIWAVKNNRLGIAEKLLSK   90 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc----------------cccccccCccHHHHHHHcCCHHHHHHHHHC
Confidence            4567788888999999999999999999888776                455678888888888888888888888888


Q ss_pred             CCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCcc
Q 045083          154 DPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYS  233 (556)
Q Consensus       154 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~  233 (556)
                      +++++ ..+..|.||||+|+..|+.+++++|++++.+...      .+..|.||||.|+..|+.+++++|++.+.+. +.
T Consensus        91 g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~  162 (192)
T 2rfm_A           91 GSNVN-TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVND------RNLEGETPLIVASKYGRSEIVKKLLELGADI-SA  162 (192)
T ss_dssp             TCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TC
T ss_pred             CCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CC
Confidence            88776 6677788888888888888888888877655322      5667777777777777777777777777663 56


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 045083          234 ANRNSETPLYMAVANGSAEIVAEILQN  260 (556)
Q Consensus       234 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~  260 (556)
                      +|..|.||||+|+..|+.+++++|++.
T Consensus       163 ~~~~g~t~l~~A~~~~~~~~v~~Ll~~  189 (192)
T 2rfm_A          163 RDLTGLTAEASARIFGRQEVIKIFTEV  189 (192)
T ss_dssp             BCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence            667777777777777777777777654

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=2.1e-27  Score=212.94  Aligned_cols=162  Identities=22%  Similarity=0.254  Sum_probs=144.8

Q ss_pred             hhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCC
Q 045083          198 EKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQ  277 (556)
Q Consensus       198 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g  277 (556)
                      +.++..|.||||.|+..|+.+++++|++.+.++ +..+..|+||||+|+..|+.+++++|++.+.+      ++.+|..|
T Consensus        29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g  101 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN------VNTKDFSG  101 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC------TTCCCTTS
T ss_pred             hCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCC------CCCCCCCC
Confidence            347889999999999999999999999988874 67888899999999999999999999998874      56778889


Q ss_pred             CchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCCh
Q 045083          278 NTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPT  357 (556)
Q Consensus       278 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~  357 (556)
                      .||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+.+|+.+++++|+++|++++.+|..|+||||+|+..++.
T Consensus       102 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~  180 (192)
T 2rfm_A          102 KTPLMWSIIFGYSEMSYFLLEHGANVN-DRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQ  180 (192)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcH
Confidence            999999999999999999999999876 7788999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhh
Q 045083          358 DILERVLIVR  367 (556)
Q Consensus       358 ~~~~~~~~~~  367 (556)
                      ++++.++..+
T Consensus       181 ~~v~~Ll~~~  190 (192)
T 2rfm_A          181 EVIKIFTEVR  190 (192)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhcc
Confidence            9888877653

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=1.6e-26  Score=202.22  Aligned_cols=156  Identities=21%  Similarity=0.239  Sum_probs=119.7

Q ss_pred             CCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhH
Q 045083          203 EQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLH  282 (556)
Q Consensus       203 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh  282 (556)
                      .|.||||.|+..|+.+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|++.+.+      ++..+..|.||||
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~   74 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD------PQLLGKGRESALS   74 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTCCCHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC------CCCcCCCCCcHHH
Confidence            467777777777777777777777766 366777788888888888888888888877653      4556677788888


Q ss_pred             HHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHHH
Q 045083          283 EAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILER  362 (556)
Q Consensus       283 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~  362 (556)
                      +|+..|+.+++++|+++|++++ .+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.++++.
T Consensus        75 ~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~  153 (167)
T 3v31_A           75 LACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQV  153 (167)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence            8888888888888888877765 667778888888888888888888888888888888888888888888887777766


Q ss_pred             HHHh
Q 045083          363 VLIV  366 (556)
Q Consensus       363 ~~~~  366 (556)
                      ++..
T Consensus       154 L~~~  157 (167)
T 3v31_A          154 IESH  157 (167)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=4.9e-27  Score=206.58  Aligned_cols=170  Identities=21%  Similarity=0.235  Sum_probs=149.1

Q ss_pred             CCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHH
Q 045083          131 QNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHE  210 (556)
Q Consensus       131 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~  210 (556)
                      +.||||.|+..|+.+++++|++.++......+..|.||||+|+..|+.+++++|++++.+...      .+..|.||||.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------~~~~g~t~L~~   75 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI------LAKERESALSL   75 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC------CCTTCCCHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchh------hcccCCCHHHH
Confidence            578999999999999999999999886668899999999999999999999999999876433      78899999999


Q ss_pred             HHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCH
Q 045083          211 AVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSV  290 (556)
Q Consensus       211 A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~  290 (556)
                      |+..|+.+++++|++.+.++ +..|.+|.||||+|+..|+.+++++|++.+.+      ++.+|..|.||||+|+..|+.
T Consensus        76 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------~~~~~~~g~t~l~~A~~~~~~  148 (172)
T 3v30_A           76 ASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGAD------LTTEADSGYTPMDLAVALGYR  148 (172)
T ss_dssp             HHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------ccccCCCCCCHHHHHHHhCcH
Confidence            99999999999999999985 78899999999999999999999999999874      567889999999999999999


Q ss_pred             HHHHHHHhcCCCCCccccCCCCCH
Q 045083          291 DVAKILIEADPHVPYSANRNSETP  314 (556)
Q Consensus       291 ~~v~~Ll~~~~~~~~~~~~~g~t~  314 (556)
                      +++++|++++++.. ..+..|.||
T Consensus       149 ~~~~~L~~~~~~~~-~~~~~~~~p  171 (172)
T 3v30_A          149 KVQQVIENHILKLF-QSNLVPADP  171 (172)
T ss_dssp             HHHHHHHHHHHHHS-CC-------
T ss_pred             HHHHHHHHHHHHHh-cccCCCCCC
Confidence            99999999998865 556666665

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=1.8e-30  Score=255.22  Aligned_cols=270  Identities=14%  Similarity=0.166  Sum_probs=184.1

Q ss_pred             HHHHHHh-cCCchHHHHhhhhhcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCcc--ccccccC
Q 045083            4 KLYEAAA-KGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPS--LLFQANA   80 (556)
Q Consensus         4 ~L~~A~~-~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~   80 (556)
                      .+++|.. .++.+.+++++++|.+.       +||||+|+..|+.           +++++|   ++.+..  .....+.
T Consensus        68 ~~~~a~~~~~~~~~~~~l~~~g~~~-------~T~Lh~Aa~~G~~-----------e~v~~L---l~~ga~~~~~~~~~~  126 (376)
T 2aja_A           68 CLYYAHYNRNAKQLWSDAHKKGIKS-------EVICFVAAITGCS-----------SALDTL---CLLLTSDEIVKVIQA  126 (376)
T ss_dssp             HHHHHHTTTTCTTHHHHHHHHTCCH-------HHHHHHHHHHCCH-----------HHHHHH---TTC--CCSSCC--CH
T ss_pred             HHHHHHhcCCCHHHHHHHHHcCCCc-------CCHHHHHHHcCCH-----------HHHHHH---HHcCCcHHHHHHhcc
Confidence            3556666 58889999999887654       4999999999999           999999   444331  1224456


Q ss_pred             CCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcc-
Q 045083           81 KGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSY-  159 (556)
Q Consensus        81 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~-  159 (556)
                      .|.||||+||..|+.++|++|+++|++...             .+..+.+ .||||+|+..|+.+++++|+++|+++.. 
T Consensus       127 ~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~-------------~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~  192 (376)
T 2aja_A          127 ENYQAFRLAAENGHLHVLNRLCELAPTEIM-------------AMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATA  192 (376)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHSCTTTHH-------------HHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCccc-------------cccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchh
Confidence            788999999999999999999999864210             1112222 9999999999999999999999998762 


Q ss_pred             cccCCCCcHHHHHH-HcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCC
Q 045083          160 SANRNSETLLYMAV-ANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNS  238 (556)
Q Consensus       160 ~~~~~g~t~L~~A~-~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g  238 (556)
                      ..|..|.||||+|+ ..|+.+++++|++++.             .|.||||.|+..|+.+++++|++++++. +..+   
T Consensus       193 ~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------------~~~taL~~Aa~~g~~evv~lL~~~ga~~-~~~~---  255 (376)
T 2aja_A          193 MIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------------MLAYAEIHEFEYGEKYVNPFIARHVNRL-KEMH---  255 (376)
T ss_dssp             HHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------------HHHHHHHCTTTTTTTTHHHHHHHHHHHH-HHHH---
T ss_pred             ccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------------ccchHHHHHHHCCCHHHHHHHHhcCccc-cccc---
Confidence            26778999999999 9999999999998541             2789999999999999999999987653 2221   


Q ss_pred             CCHHHHHHHcCCHH------------HHHHHHHcCChhHH---HHHh-----------hhcCCCCCchhHHHHhcCCHHH
Q 045083          239 ETPLYMAVANGSAE------------IVAEILQNCPESAA---RQML-----------EKTNEEQNTPLHEAVRLRSVDV  292 (556)
Q Consensus       239 ~t~L~~A~~~g~~~------------~v~~Ll~~~~~~~~---~~~~-----------~~~~~~g~t~Lh~A~~~g~~~~  292 (556)
                       ++++.|+.+|+.+            +++.|+..+.....   +..+           ......+.||||+|+..|+.++
T Consensus       256 -~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~  334 (376)
T 2aja_A          256 -DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGA  334 (376)
T ss_dssp             -TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTH
T ss_pred             -HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHH
Confidence             2455555555544            23344444322110   0000           1223457789999999999999


Q ss_pred             HHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHH
Q 045083          293 AKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKI  330 (556)
Q Consensus       293 v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  330 (556)
                      +++|++.+    ..++..++|++.+|-..|+.++.+.-
T Consensus       335 v~lLl~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~  368 (376)
T 2aja_A          335 CALLLSIP----SVLALTKANNYYINETGGRLDLRAVA  368 (376)
T ss_dssp             HHHHTTSH----HHHHSCC-------------------
T ss_pred             HHHHHcCh----HHHHHHHHhccccccccccccHHHHH
Confidence            99999865    35678899999999999999887653

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=6.2e-27  Score=203.73  Aligned_cols=156  Identities=19%  Similarity=0.190  Sum_probs=87.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 045083          166 ETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMA  245 (556)
Q Consensus       166 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A  245 (556)
                      .+|||.|+..|+.+++++|++++.+..      ..+..|.||||.|+. |+.+++++|++.+.+. +.++..|.||||+|
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~------~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A   77 (162)
T 1ihb_A            6 GNELASAAARGDLEQLTSLLQNNVNVN------AQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDA   77 (162)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTTSCCCTT------CCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             hhHHHHHHHcCCHHHHHHHHhCCCCcc------ccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence            344444444444444444444443321      134455555555555 5555555555555442 44555566666666


Q ss_pred             HHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHH
Q 045083          246 VANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVK  325 (556)
Q Consensus       246 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~  325 (556)
                      +..|+.+++++|++.+.+      ++.+|..|+||||+|+..|+.+++++|+++|++..+.+|..|+||||+|+.+|+.+
T Consensus        78 ~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~  151 (162)
T 1ihb_A           78 ARAGFLDTLQTLLEFQAD------VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE  151 (162)
T ss_dssp             HHHTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHcCCHHHHHHHHHcCCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence            666666666666665542      34555666666666666666666666666666543455666666666666666666


Q ss_pred             HHHHHHhcCC
Q 045083          326 IVAKILQKCP  335 (556)
Q Consensus       326 ~v~~Ll~~~~  335 (556)
                      ++++|+++|+
T Consensus       152 ~~~~Ll~~GA  161 (162)
T 1ihb_A          152 VVSLMQANGA  161 (162)
T ss_dssp             HHHHHHHTC-
T ss_pred             HHHHHHHhCC
Confidence            6666666655

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=5.1e-27  Score=204.29  Aligned_cols=156  Identities=19%  Similarity=0.191  Sum_probs=80.6

Q ss_pred             CChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccc
Q 045083           82 GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSA  161 (556)
Q Consensus        82 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  161 (556)
                      ..||||.|+..|+.+++++|++.+.+                ++..|..|.||||+|+. |+.+++++|++.+.+++ ..
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~----------------~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-~~   66 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVN----------------VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPD-LK   66 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCC----------------TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTT-CC
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCC----------------ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCC-CC
Confidence            34566666666666666666655443                23345556666666555 66666666666555554 44


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCH
Q 045083          162 NRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETP  241 (556)
Q Consensus       162 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~  241 (556)
                      +..|.||||+|+..|+.+++++|++++.+..      ..+..|.||||.|+..|+.+++++|++.+++..+..+..|.||
T Consensus        67 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~  140 (162)
T 1ihb_A           67 DRTGFAVIHDAARAGFLDTLQTLLEFQADVN------IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA  140 (162)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------CcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcH
Confidence            4555555555555555555555555543321      1344445555555555555555555554444334444444444


Q ss_pred             HHHHHHcCCHHHHHHHHHcC
Q 045083          242 LYMAVANGSAEIVAEILQNC  261 (556)
Q Consensus       242 L~~A~~~g~~~~v~~Ll~~~  261 (556)
                      ||+|+..|+.+++++|+++|
T Consensus       141 l~~A~~~~~~~~~~~Ll~~G  160 (162)
T 1ihb_A          141 CDLARLYGRNEVVSLMQANG  160 (162)
T ss_dssp             HHHHHHTTCHHHHHHHHHTC
T ss_pred             HHHHHHcCCHHHHHHHHHhC
Confidence            44444444444444444443

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=1.6e-26  Score=202.16  Aligned_cols=157  Identities=23%  Similarity=0.246  Sum_probs=115.4

Q ss_pred             CCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCccc
Q 045083           81 KGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYS  160 (556)
Q Consensus        81 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~  160 (556)
                      .|.||||.|+..|+.+++++|++.+.+                ++..|..|.||||+|+..|+.+++++|++.+.+++ .
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~   64 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV----------------INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-L   64 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-C
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC----------------cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-C
Confidence            467888888888888888888877655                45567778888888888888888888888877766 5


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCC
Q 045083          161 ANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSET  240 (556)
Q Consensus       161 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t  240 (556)
                      .+..|.||||+|+..|+.+++++|++++.+..      ..+..|.||||.|+..|+.+++++|++.+.+. +..|.+|.|
T Consensus        65 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t  137 (167)
T 3v31_A           65 LGKGRESALSLACSKGYTDIVKMLLDCGVDVN------EYDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYN  137 (167)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCC
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC------cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCC
Confidence            66777777777777777777777777765532      25666777777777777777777777776663 556667777


Q ss_pred             HHHHHHHcCCHHHHHHHHHcC
Q 045083          241 PLYMAVANGSAEIVAEILQNC  261 (556)
Q Consensus       241 ~L~~A~~~g~~~~v~~Ll~~~  261 (556)
                      |||+|+..|+.+++++|++++
T Consensus       138 ~l~~A~~~~~~~~~~~L~~~~  158 (167)
T 3v31_A          138 SMDLAVALGYRSVQQVIESHL  158 (167)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCcHHHHHHHHHHH
Confidence            777777777777777776665

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=1.6e-26  Score=202.58  Aligned_cols=157  Identities=24%  Similarity=0.360  Sum_probs=89.0

Q ss_pred             cCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCc
Q 045083           79 NAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVS  158 (556)
Q Consensus        79 ~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  158 (556)
                      ...+.+|||.|++.|+.++|++|++++.+                ++.+|..|.||||+|+..|+.+++++|++++.+++
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~   74 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGAD----------------VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN   74 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCC----------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            34455666666666666666666666554                34455666666666666666666666666666554


Q ss_pred             ccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCC
Q 045083          159 YSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNS  238 (556)
Q Consensus       159 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g  238 (556)
                       ..+..|.||||+|+..|+.+++++|++++.+..      ..+..|.||||.|+..|+.+++++|++++.+. +.+|..|
T Consensus        75 -~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g  146 (169)
T 2y1l_E           75 -AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN------ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFG  146 (169)
T ss_dssp             -CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTS
T ss_pred             -ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCC
Confidence             445556666666666666666666665554322      14445555555555555555555555555542 4445555


Q ss_pred             CCHHHHHHHcCCHHHHHHHHH
Q 045083          239 ETPLYMAVANGSAEIVAEILQ  259 (556)
Q Consensus       239 ~t~L~~A~~~g~~~~v~~Ll~  259 (556)
                      .||||+|+..|+.+++++|++
T Consensus       147 ~t~l~~A~~~~~~~~~~~L~~  167 (169)
T 2y1l_E          147 KTAFDISIDNGNEDLAEILQK  167 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCHHHHHHHhCCHHHHHHHHH
Confidence            555555555555555555544

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=2.2e-26  Score=198.11  Aligned_cols=150  Identities=19%  Similarity=0.237  Sum_probs=115.3

Q ss_pred             CcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHH
Q 045083          205 NTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEA  284 (556)
Q Consensus       205 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A  284 (556)
                      .++||.|+..|+.+++++|++.+++.  ..+..|.||||+|+..|+.+++++|++.+.+      ++.++..|+||||+|
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A   74 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPF--TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS------RDARTKVDRTPLHMA   74 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC--CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC------TTCCCTTCCCHHHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCC--CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------CCCCCCCCCCHHHHH
Confidence            46777777777777777777777664  2567777888888888888888888877653      456677788888888


Q ss_pred             HhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHHHH
Q 045083          285 VRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERV  363 (556)
Q Consensus       285 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~~  363 (556)
                      +..|+.+++++|+++|++++ .+|..|+||||+|+.+|+.+++++|+++|++++.+|..|+||||+|+..++.++++.+
T Consensus        75 ~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           75 ASEGHANIVEVLLKHGADVN-AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHcChHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            88888888888888887765 6677788888888888888888888888888888888888888888888777766543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=2.8e-26  Score=200.97  Aligned_cols=156  Identities=27%  Similarity=0.376  Sum_probs=105.0

Q ss_pred             CCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCch
Q 045083          201 NEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTP  280 (556)
Q Consensus       201 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~  280 (556)
                      ...+.++|+.|+..|+.+++++|++.+.++ +..|.+|.||||+|+..|+.+++++|++.+.+      ++..|..|.||
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~   83 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD------VNAVDHAGMTP   83 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------CCccCCCCCCH
Confidence            444556677777777777777777666663 55666677777777777777777777766653      34556667777


Q ss_pred             hHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHH
Q 045083          281 LHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDIL  360 (556)
Q Consensus       281 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~  360 (556)
                      ||+|+..|+.+++++|+++|++++ .+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++
T Consensus        84 L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~  162 (169)
T 2y1l_E           84 LRLAALFGHLEIVEVLLKNGADVN-ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLA  162 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHH
Confidence            777777777777777777776654 5566677777777777777777777777777777777777777777777766666


Q ss_pred             HHHH
Q 045083          361 ERVL  364 (556)
Q Consensus       361 ~~~~  364 (556)
                      +.++
T Consensus       163 ~~L~  166 (169)
T 2y1l_E          163 EILQ  166 (169)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=1.8e-26  Score=201.44  Aligned_cols=157  Identities=27%  Similarity=0.322  Sum_probs=125.6

Q ss_pred             cCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCc
Q 045083          200 TNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNT  279 (556)
Q Consensus       200 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t  279 (556)
                      .+..|.++||.|+..|+.++++.|++.++......+..|.||||+|+..|+.+++++|++.+.+      ++.+|..|+|
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t   77 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD------VHAKDKGGLV   77 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCC
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC------CCccCCCCCC
Confidence            4566778888888888888888888766655667777788888888888888888888888764      4667778888


Q ss_pred             hhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhH
Q 045083          280 PLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDI  359 (556)
Q Consensus       280 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~  359 (556)
                      |||+|+..|+.+++++|+++|++++ .+|..|+||||+|+.+|+.+++++|+++|++++.+|..|+||||+|.. ++.++
T Consensus        78 ~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i  155 (165)
T 3twr_A           78 PLHNACSYGHYEVAELLVKHGAVVN-VADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDI  155 (165)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHH
T ss_pred             HHHHHHHcCcHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHH
Confidence            8888888888888888888888875 667888888888888888888888888888888888888888888766 66677


Q ss_pred             HHHHH
Q 045083          360 LERVL  364 (556)
Q Consensus       360 ~~~~~  364 (556)
                      ++.++
T Consensus       156 ~~~L~  160 (165)
T 3twr_A          156 QDLLR  160 (165)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            76664

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=3.6e-26  Score=202.39  Aligned_cols=165  Identities=25%  Similarity=0.291  Sum_probs=89.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHH
Q 045083          165 SETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYM  244 (556)
Q Consensus       165 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~  244 (556)
                      +.++|+.|+..|+.+++++|++.++...     +..+..|.||||.|+..|+.+++++|++.+.++ +..|.+|.||||+
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~-----~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~   78 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNTENDL-----NQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHL   78 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCTTSCT-----TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCcccc-----cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHH
Confidence            3444555555555555555554432221     114445555555555555555555555555542 4455555566666


Q ss_pred             HHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCH
Q 045083          245 AVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSV  324 (556)
Q Consensus       245 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~  324 (556)
                      |+..|+.+++++|++.+.+      ++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+..++.
T Consensus        79 A~~~~~~~~v~~Ll~~g~~------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpl~~A~~~~~~  151 (179)
T 3f6q_A           79 AASHGHRDIVQKLLQYKAD------INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS-ICNKYGEMPVDKAKAPLRE  151 (179)
T ss_dssp             HHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS-BCCTTSCCGGGGSCHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCC------CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc-hhccCCCCcHHHHHHHHHH
Confidence            6666666666666655542      34455556666666666666666666666665553 4555666666666666666


Q ss_pred             HHHHHHHhcCCCCCCCCC
Q 045083          325 KIVAKILQKCPSPAHEGP  342 (556)
Q Consensus       325 ~~v~~Ll~~~~~~~~~d~  342 (556)
                      +++++|++.|++++..+.
T Consensus       152 ~~~~~L~~~g~~~~~~~~  169 (179)
T 3f6q_A          152 LLRERAEKMGQNLNRIPY  169 (179)
T ss_dssp             HHHHHHHHTTCCCSCBCC
T ss_pred             HHHHHHHHhhcCcccCCc
Confidence            666666666666554443

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=5.5e-26  Score=201.19  Aligned_cols=161  Identities=16%  Similarity=0.198  Sum_probs=146.3

Q ss_pred             CCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchh
Q 045083          202 EEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPL  281 (556)
Q Consensus       202 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L  281 (556)
                      ..+.++||.|+..|+.+++++|++.++...+..+..|+||||+|+..|+.+++++|++.+.+      ++.+|..|.|||
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~L   76 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR------INVMNRGDDTPL   76 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTCCCHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC------CCCcCCCCCCHH
Confidence            46789999999999999999999997776788999999999999999999999999999874      567889999999


Q ss_pred             HHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHH
Q 045083          282 HEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE  361 (556)
Q Consensus       282 h~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~  361 (556)
                      |+|+..|+.+++++|+++|++++ .+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..+..++++
T Consensus        77 ~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~  155 (179)
T 3f6q_A           77 HLAASHGHRDIVQKLLQYKADIN-AVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRE  155 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHH
Confidence            99999999999999999999986 77999999999999999999999999999999999999999999999988888888


Q ss_pred             HHHHhhCC
Q 045083          362 RVLIVRGT  369 (556)
Q Consensus       362 ~~~~~~~~  369 (556)
                      .++..+..
T Consensus       156 ~L~~~g~~  163 (179)
T 3f6q_A          156 RAEKMGQN  163 (179)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHhhcC
Confidence            77765544

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=1.2e-25  Score=193.47  Aligned_cols=150  Identities=22%  Similarity=0.306  Sum_probs=106.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 045083          166 ETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMA  245 (556)
Q Consensus       166 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A  245 (556)
                      .+||+.|+..|+.+++++|++.+.+..       .+..|.||||.|+..|+.+++++|++.+.+. +..+..|+||||+|
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A   74 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT-------TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMA   74 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-------CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC-------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence            356666666666666666666654321       4556667777777777777777777666663 56677777777777


Q ss_pred             HHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHH
Q 045083          246 VANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVK  325 (556)
Q Consensus       246 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~  325 (556)
                      +..|+.+++++|++.+.+      ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+.+|+.+
T Consensus        75 ~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~~~  147 (153)
T 1awc_B           75 ASEGHANIVEVLLKHGAD------VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH-TQSKFCKTAFDISIDNGNED  147 (153)
T ss_dssp             HHHTCHHHHHHHHTTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHH
T ss_pred             HHcChHHHHHHHHHcCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHH
Confidence            777777777777777653      45667778888888888888888888888887765 66778888888888888888


Q ss_pred             HHHHH
Q 045083          326 IVAKI  330 (556)
Q Consensus       326 ~v~~L  330 (556)
                      ++++|
T Consensus       148 i~~~L  152 (153)
T 1awc_B          148 LAEIL  152 (153)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            87764

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=3e-29  Score=230.85  Aligned_cols=180  Identities=21%  Similarity=0.198  Sum_probs=89.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHH
Q 045083          165 SETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYM  244 (556)
Q Consensus       165 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~  244 (556)
                      +.||||.|+..|+.+++++|++.+.+..      ..+..|.||||.|+..|+.+++++|++.+.++ +..|.+|+||||+
T Consensus        21 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~------~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh~   93 (229)
T 2vge_A           21 PLVLLLDAALTGELEVVQQAVKEMNDPS------QPNEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHC   93 (229)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHSSCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHH
T ss_pred             hhHHHHHHHHcCCHHHHHHHHhcCCCCC------CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHH
Confidence            3344444444444444444444433221      13444445555555555555555555544442 4445555555555


Q ss_pred             HHHcCCHHHHHHHHHcCChhHHHHHhhhcC-CCCCchhHHH--HhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHc
Q 045083          245 AVANGSAEIVAEILQNCPESAARQMLEKTN-EEQNTPLHEA--VRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAAN  321 (556)
Q Consensus       245 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-~~g~t~Lh~A--~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  321 (556)
                      |+..|+.+++++|++.+.+      ++..+ ..|+||||+|  +..|+.+++++|++.|++++ ..|..|.|+++.++..
T Consensus        94 A~~~g~~~~v~~Ll~~ga~------~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~-~~~~~~~~~l~~~~~~  166 (229)
T 2vge_A           94 AASCNDTVICMALVQHGAA------IFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMG-LMNSGAVYALWDYSAE  166 (229)
T ss_dssp             HHHTTCHHHHHHHHTTTCC------TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTT-TSGGGEEEESSCBCCS
T ss_pred             HHHcCCHHHHHHHHHcCCC------cccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcc-cccCCchHHHHHHhhc
Confidence            5555555555555555442      22332 3555555555  55555555555555555543 3445555555543333


Q ss_pred             CCHHHHHHHHhcCCC--CCCCCCCCCcHHHHHHhcCChhHHH
Q 045083          322 GSVKIVAKILQKCPS--PAHEGPDGKTALHAAVYTYPTDILE  361 (556)
Q Consensus       322 ~~~~~v~~Ll~~~~~--~~~~d~~g~t~L~~A~~~~~~~~~~  361 (556)
                      +..   +.|+..|++  ++.+|..|+||||+|+..|+.++++
T Consensus       167 ~~~---~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~  205 (229)
T 2vge_A          167 FGD---ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVP  205 (229)
T ss_dssp             STT---BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEE
T ss_pred             ccc---ccCccccccccccccCCCcccHHHHHHHcCCcceee
Confidence            222   344555555  4556666666666666666555543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=1.2e-25  Score=194.28  Aligned_cols=151  Identities=22%  Similarity=0.311  Sum_probs=94.0

Q ss_pred             CcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHH
Q 045083          205 NTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEA  284 (556)
Q Consensus       205 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A  284 (556)
                      .||||.|+..|+.++++.|++......+..+..|.||||+ +..|+.+++++|++.+.+      ++.+|..|.||||+|
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A   75 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS------PNVQDTSGTSPVHDA   75 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHH
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC------CCCcCCCCCCHHHHH
Confidence            3566666666666666666665322345556666666666 666666666666666543      345556666666666


Q ss_pred             HhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHHHHH
Q 045083          285 VRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVL  364 (556)
Q Consensus       285 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~~~  364 (556)
                      +..|+.+++++|+++|++++ .+|..|+||||+|+.+|+.+++++|++. ++++.+|..|+||||+|+..++.++++.++
T Consensus        76 ~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  153 (156)
T 1bd8_A           76 ARTGFLDTLKVLVEHGADVN-VPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQ  153 (156)
T ss_dssp             HHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHH
T ss_pred             HHcCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            66666666666666666654 4566666666666666666666666666 666666666666666666666666665554

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.93  E-value=6.8e-26  Score=197.74  Aligned_cols=160  Identities=26%  Similarity=0.300  Sum_probs=87.5

Q ss_pred             hccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCc
Q 045083          127 TNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNT  206 (556)
Q Consensus       127 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t  206 (556)
                      .|.+|.||||.|++.|+.++++.|++.++......+..|.||||+|+..|+.+++++|++++.+..      ..+..|.|
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------~~~~~g~t   77 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH------AKDKGGLV   77 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT------CCCTTSCC
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCC------ccCCCCCC
Confidence            355666777777777777777777765443333445556666666666666666666666554422      14555555


Q ss_pred             HhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHh
Q 045083          207 PLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVR  286 (556)
Q Consensus       207 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~  286 (556)
                      |||.|+..|+.+++++|++.+.+. +..|..|+||||+|+..|+.+++++|++.+.+      ++.+|..|+||||+|+.
T Consensus        78 ~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------~~~~~~~g~t~l~~a~~  150 (165)
T 3twr_A           78 PLHNACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGAD------PTKKNRDGNTPLDLVKD  150 (165)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCTGGGSCT
T ss_pred             HHHHHHHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------CcccCCCCCChhHhHhc
Confidence            555555555555555555555553 44455555555555555555555555555442      23444555555555443


Q ss_pred             cCCHHHHHHHHhcC
Q 045083          287 LRSVDVAKILIEAD  300 (556)
Q Consensus       287 ~g~~~~v~~Ll~~~  300 (556)
                       |+.+++++|+++|
T Consensus       151 -~~~~i~~~L~~~g  163 (165)
T 3twr_A          151 -GDTDIQDLLRGDA  163 (165)
T ss_dssp             -TCHHHHHHHHTC-
T ss_pred             -CChHHHHHHhhcc
Confidence             4555555555443

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.93  E-value=4.3e-29  Score=229.85  Aligned_cols=145  Identities=23%  Similarity=0.179  Sum_probs=80.6

Q ss_pred             cccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCC
Q 045083           77 QANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPH  156 (556)
Q Consensus        77 ~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  156 (556)
                      ..+.+|.||||+|+..|+.++|++|++.|.+                ++.+|..|.||||+|+..|+.+++++|++.|++
T Consensus        16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~----------------~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~   79 (229)
T 2vge_A           16 RARLNPLVLLLDAALTGELEVVQQAVKEMND----------------PSQPNEEGITALHNAICGANYSIVDFLITAGAN   79 (229)
T ss_dssp             CTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             ccccchhHHHHHHHHcCCHHHHHHHHhcCCC----------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            3445555666666666666666666666554                344556666666666666666666666666666


Q ss_pred             CcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHH--HhcCCHHHHHHHHhcCCCCCccC
Q 045083          157 VSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEA--VRLRRVDVVKILIKADPHVPYSA  234 (556)
Q Consensus       157 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~~~~~~~~~  234 (556)
                      ++ ..|..|.||||+|+..|+.+++++|++++.+....     .+..|.||||+|  +..|+.+++++|++.+++. +..
T Consensus        80 ~n-~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~-----~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~-~~~  152 (229)
T 2vge_A           80 VN-SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFAT-----TLSDGATAFEKCDPYREGYADCATYLADVEQSM-GLM  152 (229)
T ss_dssp             TT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCC-----CSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT-TTS
T ss_pred             CC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-----cCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc-ccc
Confidence            54 44555566666666666666666665555443221     123555555555  5555555555555555442 334


Q ss_pred             CCCCCCHHHH
Q 045083          235 NRNSETPLYM  244 (556)
Q Consensus       235 ~~~g~t~L~~  244 (556)
                      |..|.+|++.
T Consensus       153 ~~~~~~~l~~  162 (229)
T 2vge_A          153 NSGAVYALWD  162 (229)
T ss_dssp             GGGEEEESSC
T ss_pred             cCCchHHHHH
Confidence            4444444443

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=2.8e-25  Score=191.86  Aligned_cols=153  Identities=18%  Similarity=0.189  Sum_probs=105.1

Q ss_pred             CChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccc
Q 045083           82 GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSA  161 (556)
Q Consensus        82 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  161 (556)
                      +.||||.|+..|+.+++++|++. ...+              ++..|..|.||||+ +..|+.+++++|++.|.+++ ..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~--------------~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~-~~   64 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHR-ELVH--------------PDALNRFGKTALQV-MMFGSTAIALELLKQGASPN-VQ   64 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT-TCCC--------------TTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT-CC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHh-hCcC--------------ccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC-Cc
Confidence            45788888888888888888876 2111              34567778888888 77788888888888777765 56


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCH
Q 045083          162 NRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETP  241 (556)
Q Consensus       162 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~  241 (556)
                      |..|.||||+|+..|+.+++++|++++.+...      .+..|.||||.|+..|+.+++++|++. .+ .+..|.+|.||
T Consensus        65 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~-~~~~~~~g~t~  136 (156)
T 1bd8_A           65 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNV------PDGTGALPIHLAVQEGHTAVVSFLAAE-SD-LHRRDARGLTP  136 (156)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC------CCTTSCCHHHHHHHHTCHHHHHHHHTT-SC-TTCCCTTSCCH
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCC------cCCCCCcHHHHHHHhChHHHHHHHHhc-cC-CCCcCCCCCCH
Confidence            66777777777777777777777776654322      556666777777777777777776666 44 35566666666


Q ss_pred             HHHHHHcCCHHHHHHHHH
Q 045083          242 LYMAVANGSAEIVAEILQ  259 (556)
Q Consensus       242 L~~A~~~g~~~~v~~Ll~  259 (556)
                      ||+|+..|+.+++++|++
T Consensus       137 l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A          137 LELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHHSCCHHHHHHHHT
T ss_pred             HHHHHHcCcHHHHHHHHh
Confidence            666666666666666664

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.92  E-value=2.4e-26  Score=213.48  Aligned_cols=179  Identities=17%  Similarity=0.094  Sum_probs=122.7

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHH
Q 045083          163 RNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPL  242 (556)
Q Consensus       163 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L  242 (556)
                      ..|+||||.|+..|+.+.++.|++++.+..       .+..|.||||.|+..|+.+++++|++.+++ .+..|.+|.|||
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~-------~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L   74 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVK-------FNPLPLALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITAL   74 (239)
T ss_dssp             -----------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcc-------cCchhhHHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHH
Confidence            457888888888888888888888775543       346778889999999999999999988886 477888999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCC-CHHHHH--H
Q 045083          243 YMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSE-TPLYMA--A  319 (556)
Q Consensus       243 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~-t~L~~A--~  319 (556)
                      |+|+..|+.+++++|++++.+      ++.+|..|+||||+|+..|+.+++++|+++|++++ ..+..|. ||||+|  +
T Consensus        75 ~~A~~~g~~~~v~~Ll~~ga~------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~~~~t~l~~a~~~  147 (239)
T 1ycs_B           75 HNAVCAGHTEIVKFLVQFGVN------VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF-AMTYSDMQTAADKCEEM  147 (239)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCC------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCSSSCCCHHHHCCSS
T ss_pred             HHHHHcCCHHHHHHHHHcCCC------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-eecCCCCcchHHHHHHh
Confidence            999999999999999998874      57788899999999999999999999999999986 5555555 999999  7


Q ss_pred             HcCCHHHHHHHHhcCCCCCCC---------CCCCCcHHHHHHhcCC
Q 045083          320 ANGSVKIVAKILQKCPSPAHE---------GPDGKTALHAAVYTYP  356 (556)
Q Consensus       320 ~~~~~~~v~~Ll~~~~~~~~~---------d~~g~t~L~~A~~~~~  356 (556)
                      ..|+.+++++|+..+++++..         |..+.++++++...|.
T Consensus       148 ~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          148 EEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             STTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             hhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            888999999999988887765         5667788887766554

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.91  E-value=2.2e-25  Score=206.95  Aligned_cols=159  Identities=21%  Similarity=0.163  Sum_probs=96.5

Q ss_pred             cCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCc
Q 045083           79 NAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVS  158 (556)
Q Consensus        79 ~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  158 (556)
                      +..|.||||.|++.|+.+.++.|+++|++.                + .+..|.||||.|+..|+.+++++|++.+++++
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~----------------~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~   64 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRV----------------K-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPS   64 (239)
T ss_dssp             ----------------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCC
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCc----------------c-cCchhhHHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            346788888888888888888888888763                2 23567888888888888888888888888776


Q ss_pred             ccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCC
Q 045083          159 YSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNS  238 (556)
Q Consensus       159 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g  238 (556)
                       ..|..|.||||+|+..|+.+++++|++++.+..      ..+..|.||||+|+..|+.+++++|+++++++ +..+..|
T Consensus        65 -~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~------~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~  136 (239)
T 1ycs_B           65 -LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN------AADSDGWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSD  136 (239)
T ss_dssp             -CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSS
T ss_pred             -CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ceecCCC
Confidence             667788888888888888888888888876533      26777888888888888888888888888775 4455444


Q ss_pred             C-CHHHHH--HHcCCHHHHHHHHHcCC
Q 045083          239 E-TPLYMA--VANGSAEIVAEILQNCP  262 (556)
Q Consensus       239 ~-t~L~~A--~~~g~~~~v~~Ll~~~~  262 (556)
                      . ||||+|  +..|+.+++++|++.+.
T Consensus       137 ~~t~l~~a~~~~~g~~~~~~~Ll~~~a  163 (239)
T 1ycs_B          137 MQTAADKCEEMEEGYTQCSQFLYGVQE  163 (239)
T ss_dssp             CCCHHHHCCSSSTTCCCHHHHHHHHHH
T ss_pred             CcchHHHHHHhhhccHHHHHHHHHhhh
Confidence            4 888877  66777888888877664

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.91  E-value=3.2e-24  Score=185.12  Aligned_cols=143  Identities=19%  Similarity=0.215  Sum_probs=115.3

Q ss_pred             cCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCc
Q 045083          200 TNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNT  279 (556)
Q Consensus       200 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t  279 (556)
                      .+..|.||||.|+..|+.+++++|++.+.++ +..|..|+||||+|+ .|+.+++++|++.+.+      ++.+|..|+|
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~------~~~~d~~g~t   79 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAE------PNCADPATLT   79 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC------CCCCCTTTCC
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC------CCCcCCCCCc
Confidence            6788999999999999999999999998884 788899999999985 8999999999999874      5778889999


Q ss_pred             -hhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q 045083          280 -PLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAA  351 (556)
Q Consensus       280 -~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A  351 (556)
                       |||+|+..|+.+++++|+++|++++ .+|..|+||||+|+.+|+.+++++|+++|++++.+|..|.||.+-+
T Consensus        80 tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           80 RPVHDAAREGFLDTLVVLHRAGARLD-VRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence             9999999999999999999999986 7789999999999999999999999999999999999999997743

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.90  E-value=1.5e-23  Score=176.34  Aligned_cols=132  Identities=15%  Similarity=0.139  Sum_probs=96.2

Q ss_pred             cccccccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHh
Q 045083           73 SLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIK  152 (556)
Q Consensus        73 ~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  152 (556)
                      ..++..+..|.||||+|+..|+.+++++|++++.+                ++.+|..|.||||+|+. |+.+++++|++
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~   65 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD----------------PNALNRFGRRPIQVMMM-GSAQVAELLLL   65 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC----------------TTCCCTTCCTTTTTSTT-SCHHHHHHHHH
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC----------------cCCcCCCCCCHHHHHHc-CCHHHHHHHHH
Confidence            34567777888888888888888888888887765                45567778888888888 88888888888


Q ss_pred             cCCCCcccccCC-CCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCC
Q 045083          153 ADPHVSYSANRN-SETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADP  228 (556)
Q Consensus       153 ~~~~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~  228 (556)
                      ++++++ ..+.. |.||||+|+..|+.+++++|++++.+...      .+..|.||||+|+..++.+++++|+++++
T Consensus        66 ~g~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~------~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           66 HGAEPN-CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV------CDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             HTCCSS-CCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCC------CSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             CCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc------cCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            887776 55555 77777777777777777777777655322      56666677777777667777776666554

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.89  E-value=8.4e-23  Score=171.70  Aligned_cols=127  Identities=18%  Similarity=0.156  Sum_probs=84.0

Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCC-
Q 045083          232 YSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRN-  310 (556)
Q Consensus       232 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-  310 (556)
                      +..+..|.||||+|+..|+.+++++|++.+.+      ++.+|..|+||||+|+. |+.+++++|+++|++++ .+|.. 
T Consensus         6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-~~~~~~   77 (136)
T 1d9s_A            6 HMLGGSSDAGLATAAARGQVETVRQLLEAGAD------PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPN-CADPAT   77 (136)
T ss_dssp             SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSS-CCBTTT
T ss_pred             cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC------cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCC-CcCCCC
Confidence            45566666666666666666666666666543      34556666677777766 66777777776666654 45555 


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHHHHHHh
Q 045083          311 SETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIV  366 (556)
Q Consensus       311 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~~~~~  366 (556)
                      |+||||+|+.+|+.+++++|+++|++++.+|..|+||||+|+..++.++++.++..
T Consensus        78 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~  133 (136)
T 1d9s_A           78 LTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA  133 (136)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            66777777777777777776666666666666777777777766666666666544

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.89  E-value=7e-24  Score=187.78  Aligned_cols=159  Identities=10%  Similarity=0.093  Sum_probs=93.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCH----HHHHHHHhcCCCCCccCCCCCCCH
Q 045083          166 ETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRV----DVVKILIKADPHVPYSANRNSETP  241 (556)
Q Consensus       166 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~~~~~~~~~~~~g~t~  241 (556)
                      .++|+.|+..|+.+.++.++..+....       .+..|.||||+|+..++.    +++++|+++|+++ +.+|.+|+||
T Consensus         7 ~~~l~~Aa~~g~~~~~~~l~~~~~~~~-------~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~Tp   78 (186)
T 3t8k_A            7 YRTVSAAAMLGTYEDFLELFEKGYEDK-------ESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTL   78 (186)
T ss_dssp             CSSHHHHHHHSCHHHHHHHHHHSSSCH-------HHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCT
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcCcccc-------cccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcH
Confidence            355666666666666666665543321       124566666666666653    3666666666663 5666666666


Q ss_pred             HHHHHHcCC------HHHHHHHHHcCChhHHHHHhhhcCCCCC-chhHHHHhcC-----CHHHHHHHHh-cCCCCCcccc
Q 045083          242 LYMAVANGS------AEIVAEILQNCPESAARQMLEKTNEEQN-TPLHEAVRLR-----SVDVAKILIE-ADPHVPYSAN  308 (556)
Q Consensus       242 L~~A~~~g~------~~~v~~Ll~~~~~~~~~~~~~~~~~~g~-t~Lh~A~~~g-----~~~~v~~Ll~-~~~~~~~~~~  308 (556)
                      ||+|+..|+      .+++++|+++|.+      ++.+|..|+ ||||+|+..+     +.+++++|++ +|++++ .+|
T Consensus        79 Lh~a~~~~~~~~~~~~~iv~~Ll~~Gad------in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~-~~d  151 (186)
T 3t8k_A           79 FFPLFQGGGNDITGTTELCKIFLEKGAD------ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL-IKD  151 (186)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCC------SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT-CCC
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHCCCC------CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc-ccC
Confidence            666666665      4556666666653      455566666 6666666633     2346666666 666654 556


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC
Q 045083          309 RNSETPLYMAAANGSVKIVAKILQKCPSPAH  339 (556)
Q Consensus       309 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~  339 (556)
                      ..|+||||+|++.|+.+++++|+......+.
T Consensus       152 ~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~  182 (186)
T 3t8k_A          152 KWGLTALEFVKRCQKPIALKMMEDYIKKYNL  182 (186)
T ss_dssp             TTSCCHHHHHHTTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence            6666666666666666666665544333333

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.89  E-value=1.3e-23  Score=186.11  Aligned_cols=152  Identities=12%  Similarity=0.062  Sum_probs=134.4

Q ss_pred             CCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCH----HHHHHHHHcCChhHHHHHhhhcCCCCCc
Q 045083          204 QNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSA----EIVAEILQNCPESAARQMLEKTNEEQNT  279 (556)
Q Consensus       204 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~~~~~~g~t  279 (556)
                      +.++|+.|++.|+.+.++.+++.+.+.  ..+..|+||||+|+.+|+.    +++++|++.|++      ++.+|..|+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad------vn~~d~~g~T   77 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGAD------IKSRTKEGTT   77 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC------SSCCCTTCCC
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC------CCCCCCCCCc
Confidence            467899999999999999999887542  2237799999999999985    599999999985      6788999999


Q ss_pred             hhHHHHhcCC------HHHHHHHHhcCCCCCccccCCCC-CHHHHHHHcC-----CHHHHHHHHh-cCCCCCCCCCCCCc
Q 045083          280 PLHEAVRLRS------VDVAKILIEADPHVPYSANRNSE-TPLYMAAANG-----SVKIVAKILQ-KCPSPAHEGPDGKT  346 (556)
Q Consensus       280 ~Lh~A~~~g~------~~~v~~Ll~~~~~~~~~~~~~g~-t~L~~A~~~~-----~~~~v~~Ll~-~~~~~~~~d~~g~t  346 (556)
                      |||+|+..|+      .+++++|+++|++++ .+|..|+ ||||+|+..+     ..+++++|++ +|++++.+|..|+|
T Consensus        78 pLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin-~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~T  156 (186)
T 3t8k_A           78 LFFPLFQGGGNDITGTTELCKIFLEKGADIT-ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLT  156 (186)
T ss_dssp             THHHHHHHCTTCHHHHHHHHHHHHHTTCCSS-SCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCC
T ss_pred             HHHHHHHcCCcchhhHHHHHHHHHHCCCCCC-ccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCC
Confidence            9999999987      689999999999987 7899999 9999999954     3569999999 99999999999999


Q ss_pred             HHHHHHhcCChhHHHHHH
Q 045083          347 ALHAAVYTYPTDILERVL  364 (556)
Q Consensus       347 ~L~~A~~~~~~~~~~~~~  364 (556)
                      |||+|+..+..+.++.+.
T Consensus       157 pL~~A~~~~~~~~v~~L~  174 (186)
T 3t8k_A          157 ALEFVKRCQKPIALKMME  174 (186)
T ss_dssp             HHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHH
Confidence            999999999998887664

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.88  E-value=5e-23  Score=177.56  Aligned_cols=142  Identities=16%  Similarity=0.132  Sum_probs=90.2

Q ss_pred             cccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCC
Q 045083           77 QANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPH  156 (556)
Q Consensus        77 ~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  156 (556)
                      ..+..|.||||+|+..|+.++|++|++++.+                ++..|..|.||||+|+ .|+.+++++|+++|.+
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~   69 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGAN----------------PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE   69 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCC----------------TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCC----------------CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC
Confidence            4566777888888888888888888877665                4456777888888774 7778888888877777


Q ss_pred             CcccccCCCCc-HHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCC
Q 045083          157 VSYSANRNSET-LLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSAN  235 (556)
Q Consensus       157 ~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~  235 (556)
                      ++ ..+..|.| |||+|+..|+.+++++|++++.+...      .+..|.||||+|+..|+.+++++|++++.+. +..+
T Consensus        70 ~~-~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~------~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~-~~~~  141 (156)
T 1bi7_B           70 PN-CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV------RDAWGRLPVDLAEELGHRDVARYLRAAAGGT-RGSN  141 (156)
T ss_dssp             CC-CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSC------CCTTCCCHHHHHHHHTCHHHHHHHSSCC--------
T ss_pred             CC-CcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcc------cCCCCCCHHHHHHHhCHHHHHHHHHHcCCCC-CccC
Confidence            66 56666776 77777777777777777777655322      5666777777777777777777777776663 5566


Q ss_pred             CCCCCHHH
Q 045083          236 RNSETPLY  243 (556)
Q Consensus       236 ~~g~t~L~  243 (556)
                      ..|.||.+
T Consensus       142 ~~g~t~~~  149 (156)
T 1bi7_B          142 HARIDAAE  149 (156)
T ss_dssp             --------
T ss_pred             cCcCcccc
Confidence            66666654

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.88  E-value=6.5e-22  Score=163.82  Aligned_cols=126  Identities=35%  Similarity=0.559  Sum_probs=87.8

Q ss_pred             CCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhH
Q 045083          203 EQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLH  282 (556)
Q Consensus       203 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh  282 (556)
                      +|.||||.|+..|+.+++++|++.+.+. +..+..|.||||+|+..|+.+++++|++.+.+      ++.+|..|.||||
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~l~   73 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLH   73 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTSCCHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC------CcccCCCCCcHHH
Confidence            3667777777777777777777766663 55666777777777777777777777776653      4456667777777


Q ss_pred             HHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 045083          283 EAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPS  336 (556)
Q Consensus       283 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~  336 (556)
                      +|+..|+.+++++|+++|++++ .+|..|+||||+|+..++.+++++|+++|++
T Consensus        74 ~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           74 LAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHcChHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            7777777777777777777664 5566777777777777777777777776653

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.88  E-value=4.6e-22  Score=167.16  Aligned_cols=127  Identities=25%  Similarity=0.394  Sum_probs=85.1

Q ss_pred             cCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCc
Q 045083          200 TNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNT  279 (556)
Q Consensus       200 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t  279 (556)
                      ....+.||||.|+..|+.+++++|++.+.++ +..|.+|+||||+|+..|+.+++++|++.+.+      ++.+|..|+|
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~d~~g~t   82 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD------VNAVDAIGFT   82 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTCCC
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------CCcCCCCCCC
Confidence            3445667777777777777777777776663 55666677777777777777777777776653      4556666777


Q ss_pred             hhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 045083          280 PLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKC  334 (556)
Q Consensus       280 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  334 (556)
                      |||+|+..|+.+++++|+++|++++ .+|..|+||||+|+.+|+.+++++|++.|
T Consensus        83 ~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           83 PLHLAAFIGHLEIAEVLLKHGADVN-AQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCc-CcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            7777777777777777777776654 55666777777777777777777766543

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.87  E-value=7.5e-23  Score=190.32  Aligned_cols=171  Identities=16%  Similarity=0.142  Sum_probs=137.0

Q ss_pred             CCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCCCChHHHHHHHhCcHHHHHHHHHHhccCCch
Q 045083           32 VMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPID  111 (556)
Q Consensus        32 ~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~  111 (556)
                      ..+.+++.+++..|+.           +.+....       ......+..|.||||+|+..|+.+++++|++ +.+    
T Consensus        13 ~~~~~~~l~~~~~g~~-----------~~~~~~~-------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~----   69 (244)
T 3ui2_A           13 GEGAMEYLIEWKDGHS-----------PSWVPSS-------YIAADVVSEYETPWWTAARKADEQALSQLLE-DRD----   69 (244)
T ss_dssp             TTTEEEEEEEESSCCC-----------CEEEEGG-------GSCHHHHHHHHHHHHHHHTTTCHHHHHHTTT-TCC----
T ss_pred             CCCccHHHHHHHcCCC-----------ccccccc-------ccccccccCCCCHHHHHHHcCCHHHHHHHHc-CCC----
Confidence            4677899999999998           5544431       1122345678999999999999999999998 655    


Q ss_pred             hhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCh
Q 045083          112 LERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQS  191 (556)
Q Consensus       112 ~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~  191 (556)
                                  ++.+|..|.||||+|+..|+.+++++|+++|++++...+..|.||||+|+..|+.+++++|++++.+.
T Consensus        70 ------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~  137 (244)
T 3ui2_A           70 ------------VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI  137 (244)
T ss_dssp             ------------TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             ------------CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence                        56688999999999999999999999999999988555588999999999999999999999988764


Q ss_pred             hHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 045083          192 AARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNC  261 (556)
Q Consensus       192 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~  261 (556)
                      ..      .+..|.||||+|+..++                  ...+.+|||+|+..|+.+++++|++..
T Consensus       138 ~~------~d~~g~t~l~~A~~~~~------------------~~~~~~~l~~a~~~g~~~iv~~L~~~~  183 (244)
T 3ui2_A          138 EV------EDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINVLEGQV  183 (244)
T ss_dssp             TC------CCTTCCCHHHHHHHHHT------------------TCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CC------CCCCCCcHHHHHHHHHh------------------ccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence            32      78889999999875321                  245678888888888888888887753

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.87  E-value=1.1e-21  Score=162.51  Aligned_cols=125  Identities=34%  Similarity=0.566  Sum_probs=80.0

Q ss_pred             CCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCccc
Q 045083           81 KGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYS  160 (556)
Q Consensus        81 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~  160 (556)
                      +|+||||+|+..|+.+++++|++++.+                ++..+..|.||||+|+..|+.+++++|++.+.++. .
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~----------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~   63 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD----------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-A   63 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCC----------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-C
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCC----------------CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc-c
Confidence            466777777777777777777776655                34456667777777777777777777777766655 4


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCC
Q 045083          161 ANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADP  228 (556)
Q Consensus       161 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~  228 (556)
                      .+..|.||||+|+..|+.+++++|++++.+..      ..+..|.||||.|+..++.+++++|+++|+
T Consensus        64 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~------~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           64 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVN------AKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             cCCCCCcHHHHHHHcChHHHHHHHHHcCCCCc------ccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            55566666666666666666666666654422      145555666666666666666666655554

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.87  E-value=5.1e-22  Score=166.86  Aligned_cols=126  Identities=21%  Similarity=0.246  Sum_probs=115.7

Q ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCC
Q 045083          233 SANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSE  312 (556)
Q Consensus       233 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~  312 (556)
                      .....+.||||+|+..|+.+++++|++.+.+      ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|+
T Consensus         9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~   81 (136)
T 2jab_A            9 HHGSDLGKKLLEAARAGQDDEVRILMANGAD------VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN-AVDAIGF   81 (136)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCC
T ss_pred             cccccccHHHHHHHHhCCHHHHHHHHHcCCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCC
Confidence            3456688999999999999999999999874      56788999999999999999999999999999986 7789999


Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHHHHHH
Q 045083          313 TPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLI  365 (556)
Q Consensus       313 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~~~~  365 (556)
                      ||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.++++.++.
T Consensus        82 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~  134 (136)
T 2jab_A           82 TPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK  134 (136)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999888764

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.86  E-value=2.7e-22  Score=168.89  Aligned_cols=123  Identities=26%  Similarity=0.265  Sum_probs=104.4

Q ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCC
Q 045083          233 SANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSE  312 (556)
Q Consensus       233 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~  312 (556)
                      .+|.+|+||||+|+..|+.+++++|++.+.+      ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~   77 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD------PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN-TTGYQND   77 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCGGGC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccc-CcCCCCC
Confidence            5678888889888888888888888888764      46777889999999999999999999999988875 6788899


Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHHH
Q 045083          313 TPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILER  362 (556)
Q Consensus       313 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~  362 (556)
                      ||||+|+.+|+.+++++|+++|++++.+|..|+||||+|+..+..+++..
T Consensus        78 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~  127 (137)
T 3c5r_A           78 SPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLL  127 (137)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhh
Confidence            99999999999999999999999999999999999999887666655543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.86  E-value=1.4e-22  Score=179.73  Aligned_cols=142  Identities=18%  Similarity=0.208  Sum_probs=116.1

Q ss_pred             ccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCC
Q 045083           78 ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHV  157 (556)
Q Consensus        78 ~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~  157 (556)
                      .+..|.||||+|+..|+.+++++|++ +.+                ++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~----------------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  102 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE-DRD----------------VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL  102 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT-TSC----------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh-cCC----------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            45678899999999999999999998 654                4667889999999999999999999999999998


Q ss_pred             cccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCC
Q 045083          158 SYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRN  237 (556)
Q Consensus       158 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~  237 (556)
                      +...+..|.||||+|+..|+.+++++|++++.+...      ++..|.||||+|+..++.                  ..
T Consensus       103 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~------~d~~g~tpl~~A~~~~~~------------------~~  158 (183)
T 3deo_A          103 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV------EDERGLTALELAREILKT------------------TP  158 (183)
T ss_dssp             TCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTC------CCTTSCCHHHHHHHHHHT------------------CC
T ss_pred             CcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcC------CCCCCCCHHHHHHHhccC------------------cc
Confidence            744448899999999999999999999988866432      788888888888764321                  34


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHc
Q 045083          238 SETPLYMAVANGSAEIVAEILQN  260 (556)
Q Consensus       238 g~t~L~~A~~~g~~~~v~~Ll~~  260 (556)
                      +.++|++|+..|+.++++.|.++
T Consensus       159 ~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          159 KGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             cccHHHHHHHcCHHHHHHHHHHh
Confidence            56888888888888888887654

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.86  E-value=3e-23  Score=184.16  Aligned_cols=164  Identities=14%  Similarity=0.109  Sum_probs=139.5

Q ss_pred             HHHhcCCchHHHHhhhhh--cccc---------cccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCcccc
Q 045083            7 EAAAKGDIEPFREIARDE--LESI---------VTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLL   75 (556)
Q Consensus         7 ~A~~~g~~~~v~~Ll~~g--~~~~---------~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   75 (556)
                      .|++.|..+.+++|++.+  ..+.         ..+..|.||||.|+..|+.           ++++.+   ++  +..+
T Consensus         6 ~aa~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~-----------~~v~~L---l~--~~~~   69 (183)
T 3deo_A            6 IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADE-----------QALSQL---LE--DRDV   69 (183)
T ss_dssp             EEEEEETTTEEEEEEEETTCCCCEEEEGGGSCHHHHHHHHHHHHHHHHTTCH-----------HHHHHH---TT--TSCT
T ss_pred             HHHHhcCCchhHHHHHHhCCCCccccchhcccccCCCCCCCHHHHHHHcCCH-----------HHHHHH---Hh--cCCC
Confidence            356778888888888653  2211         1246889999999999999           999999   55  5677


Q ss_pred             ccccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhc-cCCCcHhHHHHhcCCHHHHHHHHhcC
Q 045083           76 FQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTN-EEQNTPLHEAVRLRSVDVVKILIKAD  154 (556)
Q Consensus        76 ~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~  154 (556)
                      +..|..|.||||+|+..|+.+++++|+++|++                ++.++ ..|+||||+|+..|+.+++++|+++|
T Consensus        70 ~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----------------~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g  133 (183)
T 3deo_A           70 DAVDENGRTALLFVAGLGSDKCVRLLAEAGAD----------------LDHRDMRGGLTALHMAAGYVRPEVVEALVELG  133 (183)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----------------TTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----------------CCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcC
Confidence            88999999999999999999999999999987                44556 88999999999999999999999999


Q ss_pred             CCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhc
Q 045083          155 PHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKA  226 (556)
Q Consensus       155 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  226 (556)
                      ++++ ..|..|.||||+|+..+                       ....+.++|+.|+..|+.+++++|.++
T Consensus       134 a~~~-~~d~~g~tpl~~A~~~~-----------------------~~~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          134 ADIE-VEDERGLTALELAREIL-----------------------KTTPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             CCTT-CCCTTSCCHHHHHHHHH-----------------------HTCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCc-CCCCCCCCHHHHHHHhc-----------------------cCcccccHHHHHHHcCHHHHHHHHHHh
Confidence            9987 78999999999998632                       345678999999999999999999765

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.85  E-value=2.1e-21  Score=160.01  Aligned_cols=112  Identities=24%  Similarity=0.374  Sum_probs=90.5

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCH
Q 045083          235 NRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETP  314 (556)
Q Consensus       235 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~  314 (556)
                      +..|.||||+|+..|+.+++++|++.+.+      ++.+|..|+||||+|+..|+.+++++|++.|++++ .+|..|+||
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~tp   76 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGED------VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-APDKHHITP   76 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCC------TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCTTSCCH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCC------cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCH
Confidence            44567888888888888888888887763      45677788888888888888888888888888875 678888888


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHh
Q 045083          315 LYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVY  353 (556)
Q Consensus       315 L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~  353 (556)
                      ||+|+..++.+++++|+++|++++.+|.+|+||||+|..
T Consensus        77 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           77 LLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence            888888888888888888888888888888888888844

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.84  E-value=1.6e-21  Score=164.12  Aligned_cols=127  Identities=24%  Similarity=0.309  Sum_probs=87.6

Q ss_pred             cccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCC
Q 045083           77 QANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPH  156 (556)
Q Consensus        77 ~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  156 (556)
                      .+|.+|.||||+|+..|+.+++++|++.+.+                ++.+|..|.||||+|+..|+.+++++|++.+.+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~   68 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD----------------PNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL   68 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC----------------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----------------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc
Confidence            4567777888888888888888888777665                345667777777777777777777777777777


Q ss_pred             CcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhc
Q 045083          157 VSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKA  226 (556)
Q Consensus       157 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  226 (556)
                      ++ ..|..|.||||+|+..|+.+++++|++++.+...      .+..|.||||+|+..+..+++++|.+.
T Consensus        69 ~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~------~~~~g~tpl~~A~~~~~~~~l~~l~~~  131 (137)
T 3c5r_A           69 VN-TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA------VNIFGLRPVDYTDDESMKSLLLLPEKN  131 (137)
T ss_dssp             TT-CCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTC------CCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred             cc-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC------CCCCCCCHHHHHhhccHHHHHhhcccc
Confidence            65 5566677777777777777777777776655322      566677777777666666666555543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.84  E-value=1.4e-20  Score=178.13  Aligned_cols=131  Identities=17%  Similarity=0.126  Sum_probs=97.7

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhc---CCHHHHHHHHhcCCCCCccccCCCCCHH
Q 045083          239 ETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRL---RSVDVAKILIEADPHVPYSANRNSETPL  315 (556)
Q Consensus       239 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t~L  315 (556)
                      .++|+.|+..|+.+.++.+++.+.+......++..+..|+||||+|+..   |+.+++++|+++|++++ .+|..|+|||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in-~~d~~g~TpL  209 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD-KQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT-CCCTTCCCHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcc-ccCCCCCCHH
Confidence            4577778888888777777777764221101344467788888888887   77888888888888775 6677888888


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHHHHHHhhCCC
Q 045083          316 YMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRGTF  370 (556)
Q Consensus       316 ~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~~~~~~~~~  370 (556)
                      |+|+.+|+.+++++|+++|++++.+|.+|+||||+|+..++.++++.++....+.
T Consensus       210 h~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            8888888888888888888888888888888888888888888777777665543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.84  E-value=6.4e-21  Score=182.50  Aligned_cols=141  Identities=23%  Similarity=0.160  Sum_probs=117.1

Q ss_pred             CCcHhHHHHhcCCHHHHHHHHhcCCCCCcc-----CCCCCCCHHHHHHHc---CCHHHHHHHHHcCChhHHHHHhhhcCC
Q 045083          204 QNTPLHEAVRLRRVDVVKILIKADPHVPYS-----ANRNSETPLYMAVAN---GSAEIVAEILQNCPESAARQMLEKTNE  275 (556)
Q Consensus       204 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-----~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~~~~  275 (556)
                      ..++|+.|+..|+.+.++.|++.++++...     .+..|.||||+|+..   |+.+++++|++.+.+      ++.+|.
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad------vn~~d~  224 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH------LDAKAA  224 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC------TTCCCT
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC------CCCCCC
Confidence            346799999999999999999888885332     688899999999987   899999999999874      577889


Q ss_pred             CCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcC
Q 045083          276 EQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTY  355 (556)
Q Consensus       276 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~  355 (556)
                      .|+||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+..++.+++++|+++|++      .|.||||+|+..|
T Consensus       225 ~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g  297 (301)
T 2b0o_E          225 DGNTALHYAALYNQPDCLKLLLKGRALVG-TVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWV  297 (301)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCCS-CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcC
Confidence            99999999999999999999999999986 7899999999999999999999999998875      5889999999876


Q ss_pred             Ch
Q 045083          356 PT  357 (556)
Q Consensus       356 ~~  357 (556)
                      ..
T Consensus       298 ~~  299 (301)
T 2b0o_E          298 IS  299 (301)
T ss_dssp             --
T ss_pred             Cc
Confidence            53

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.83  E-value=1e-20  Score=175.94  Aligned_cols=143  Identities=20%  Similarity=0.213  Sum_probs=115.3

Q ss_pred             hccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcC-CCCC
Q 045083          127 TNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTN-EEQN  205 (556)
Q Consensus       127 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-~~g~  205 (556)
                      .+..|.||||+|++.|+.+++++|++ +.+++ ..|..|.||||+|+..|+.+++++|++++.+...      .+ ..|.
T Consensus        41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~------~~~~~g~  112 (244)
T 3ui2_A           41 VVSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH------RDMRGGL  112 (244)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTT-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC------CCSSSCC
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHc-CCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCc------CCCCCCC
Confidence            34568899999999999999999998 77776 6788899999999999999999999998876533      44 7788


Q ss_pred             cHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHH
Q 045083          206 TPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAV  285 (556)
Q Consensus       206 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~  285 (556)
                      ||||.|+..|+.+++++|+++++++ +.+|..|.||||+|+..+                       ....+.||||+|+
T Consensus       113 t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~-----------------------~~~~~~~~l~~a~  168 (244)
T 3ui2_A          113 TALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREIL-----------------------KTTPKGNPMQFGR  168 (244)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHH-----------------------TTCCCSSHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHH-----------------------hccCCCCHHHHHH
Confidence            8888888888888888888888884 678888888888887521                       1245778888888


Q ss_pred             hcCCHHHHHHHHhcCC
Q 045083          286 RLRSVDVAKILIEADP  301 (556)
Q Consensus       286 ~~g~~~~v~~Ll~~~~  301 (556)
                      ..|+.+++++|++.+.
T Consensus       169 ~~g~~~iv~~L~~~~~  184 (244)
T 3ui2_A          169 RIGLEKVINVLEGQVF  184 (244)
T ss_dssp             HHHHHHHHHHHHHHHE
T ss_pred             HcChHHHHHHHHHhcc
Confidence            8888888888887543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.83  E-value=5.1e-21  Score=175.49  Aligned_cols=136  Identities=20%  Similarity=0.277  Sum_probs=98.3

Q ss_pred             cCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHc-CChhHHHHHhhhcCCCCC
Q 045083          200 TNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQN-CPESAARQMLEKTNEEQN  278 (556)
Q Consensus       200 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~g~  278 (556)
                      .+..|.||||.|+..|+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|++. +.+      ++.+|..|+
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~------~~~~d~~g~  141 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE------LNQQNKLGD  141 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC------CCCCCTTSC
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC------ccccCCCCC
Confidence            5677888888888888888888888888774 67778888888888888888888888877 543      566778888


Q ss_pred             chhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC
Q 045083          279 TPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPD  343 (556)
Q Consensus       279 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~  343 (556)
                      ||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+..++.++++.|+..++..+.++.+
T Consensus       142 tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~  205 (222)
T 3ehr_A          142 TALHAAAWKGYADIVQLLLAKGARTD-LRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAE  205 (222)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCSC-CCCTTSCCHHHHCCSHHHHHHHC---------------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCc-cccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchh
Confidence            88888888888888888888888775 67788888888888888888888877777776655544

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.82  E-value=1.8e-20  Score=154.31  Aligned_cols=115  Identities=18%  Similarity=0.200  Sum_probs=99.0

Q ss_pred             cCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCc
Q 045083          200 TNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNT  279 (556)
Q Consensus       200 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t  279 (556)
                      .+..|.||||.|+..|+.+++++|++.+.++ +..|..|+||||+|+..|+.+++++|++.+.+      ++.+|..|+|
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~d~~g~t   75 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD------INAPDKHHIT   75 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC------TTCCCTTSCC
T ss_pred             cccccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC------CCcCCCCCCC
Confidence            4567889999999999999999999998884 78888999999999999999999999998874      5678889999


Q ss_pred             hhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcC
Q 045083          280 PLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANG  322 (556)
Q Consensus       280 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  322 (556)
                      |||+|+..|+.+++++|+++|++++ .+|..|+||||+|...+
T Consensus        76 pL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~  117 (123)
T 3aaa_C           76 PLLSAVYEGHVSCVKLLLSKGADKT-VKGPDGLTAFEATDNQA  117 (123)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCCCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHhCCHH
Confidence            9999999999999999999999875 78899999999994433

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.82  E-value=1e-19  Score=174.14  Aligned_cols=138  Identities=25%  Similarity=0.193  Sum_probs=83.9

Q ss_pred             cHhHHHHhcCCHHHHHHHHhcCCCCccc-----ccCCCCcHHHHHHHc---CCHHHHHHHHHhCCChhHHHHhhhcCCCC
Q 045083          133 TPLHEAVRLRSVDVVKILIKADPHVSYS-----ANRNSETLLYMAVAN---GSAEIVAEILQNCPQSAARQMLEKTNEEQ  204 (556)
Q Consensus       133 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g  204 (556)
                      ++|+.|+..|+.+.++.|++.+++++..     .+..|.||||+|+..   |+.+++++|++++++..      ..+..|
T Consensus       153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn------~~d~~G  226 (301)
T 2b0o_E          153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD------AKAADG  226 (301)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTT------CCCTTC
T ss_pred             HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCC------CCCCCC
Confidence            4577777777777777777777666532     456666677776665   66666666666665432      256666


Q ss_pred             CcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHH
Q 045083          205 NTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEA  284 (556)
Q Consensus       205 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A  284 (556)
                      .||||+|+..|+.+++++|++.++++ +.+|.+|.||||+|+..|+.+++++|++.++            ..|.||||+|
T Consensus       227 ~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga------------~~g~tpLh~A  293 (301)
T 2b0o_E          227 NTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQA------------GTFAFPLHVD  293 (301)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH------------HTTSSCCC--
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC------------CCCCChhHHH
Confidence            66666666666666666666666663 5666666666666666666666666666542            1356666666


Q ss_pred             HhcCC
Q 045083          285 VRLRS  289 (556)
Q Consensus       285 ~~~g~  289 (556)
                      ++.|+
T Consensus       294 ~~~g~  298 (301)
T 2b0o_E          294 YSWVI  298 (301)
T ss_dssp             -----
T ss_pred             HhcCC
Confidence            66554

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.82  E-value=1.2e-20  Score=173.11  Aligned_cols=130  Identities=20%  Similarity=0.189  Sum_probs=112.9

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhc-CCCCCccccCCCC
Q 045083          234 ANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEA-DPHVPYSANRNSE  312 (556)
Q Consensus       234 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~  312 (556)
                      .+.+|.||||+|+..|+.++++.|++.+.+      ++.+|..|+||||+|+..|+.+++++|++. |.+++ .+|..|+
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~-~~d~~g~  141 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVG------VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELN-QQNKLGD  141 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCC-CCCTTSC
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCC------ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcc-ccCCCCC
Confidence            356789999999999999999999998874      567889999999999999999999999999 88875 7899999


Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHHHHHHhhCCC
Q 045083          313 TPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRGTF  370 (556)
Q Consensus       313 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~~~~~~~~~  370 (556)
                      ||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..+..++++.++......
T Consensus       142 tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~  199 (222)
T 3ehr_A          142 TALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR  199 (222)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence            9999999999999999999999999999999999999999988888887766554433

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.81  E-value=1.6e-19  Score=170.76  Aligned_cols=194  Identities=18%  Similarity=0.151  Sum_probs=143.0

Q ss_pred             hccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCc
Q 045083          127 TNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNT  206 (556)
Q Consensus       127 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t  206 (556)
                      .|..+.+.++.+...|+..+.+++...-+.........+....+    ....-..+++..........     ......+
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~----~~~fI~aKYl~~~f~~~~~~-----~~~~~l~  132 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIA----RKDYITAKYMERRYARKKHA-----DTAAKLH  132 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHH----HHHHHHHHHTTCTTSCCCSS-----SHHHHHH
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHH----HHHHHHHHHHHhhccccccc-----ccchhhh
Confidence            46788899999999999877776654332221111111111111    11111111222211110000     1112246


Q ss_pred             HhHHHHhcCCHHHHHHHHhcCCCCC-----ccCCCCCCCHHHHHHHc---CCHHHHHHHHHcCChhHHHHHhhhcCCCCC
Q 045083          207 PLHEAVRLRRVDVVKILIKADPHVP-----YSANRNSETPLYMAVAN---GSAEIVAEILQNCPESAARQMLEKTNEEQN  278 (556)
Q Consensus       207 ~L~~A~~~~~~~~v~~Ll~~~~~~~-----~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~  278 (556)
                      +|+.|+..|+.+.++.+++.+.+..     ...+..|+||||+|+..   |+.+++++|++++.+      ++.+|..|+
T Consensus       133 ~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~------in~~d~~g~  206 (278)
T 1dcq_A          133 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN------LDKQTGKGS  206 (278)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC------TTCCCTTCC
T ss_pred             hhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC------ccccCCCCC
Confidence            8999999999999999999998853     34488899999999999   899999999999974      678899999


Q ss_pred             chhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 045083          279 TPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPS  336 (556)
Q Consensus       279 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~  336 (556)
                      ||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+..|+.+++++|+++|++
T Consensus       207 TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          207 TALHYCCLTDNAECLKLLLRGKASIE-IANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCC-CccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999999999986 7899999999999999999999999999875

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.78  E-value=9.4e-19  Score=136.04  Aligned_cols=91  Identities=34%  Similarity=0.556  Sum_probs=51.4

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHH
Q 045083          238 SETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYM  317 (556)
Q Consensus       238 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~  317 (556)
                      |+||||+|+..|+.+++++|++.+.+      ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|+||||+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~------~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~t~l~~   74 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHL   74 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCC------CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHH
Confidence            45555555555555555555555542      34455555566666666666666666666555543 445556666666


Q ss_pred             HHHcCCHHHHHHHHhcCC
Q 045083          318 AAANGSVKIVAKILQKCP  335 (556)
Q Consensus       318 A~~~~~~~~v~~Ll~~~~  335 (556)
                      |+..|+.+++++|+++|+
T Consensus        75 A~~~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           75 AARNGHLEVVKLLLEAGA   92 (93)
T ss_dssp             HHHTTCHHHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHHcCC
Confidence            666666666666555554

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.78  E-value=7.9e-19  Score=136.49  Aligned_cols=92  Identities=35%  Similarity=0.580  Sum_probs=79.9

Q ss_pred             CCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCccc
Q 045083           81 KGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYS  160 (556)
Q Consensus        81 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~  160 (556)
                      +|+||||+|+..|+.+++++|++.+.+                ++.+|..|.||||+|+..|+.+++++|++.|++++ .
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------------~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~   63 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD----------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-A   63 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-C
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC----------------CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-c
Confidence            478999999999999999999998876                46678889999999999999999999999998887 7


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhCC
Q 045083          161 ANRNSETLLYMAVANGSAEIVAEILQNCP  189 (556)
Q Consensus       161 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~  189 (556)
                      .|..|.||||+|+..|+.+++++|+++++
T Consensus        64 ~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           64 KDKNGRTPLHLAARNGHLEVVKLLLEAGA   92 (93)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            78889999999999999999999988764

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.78  E-value=9.6e-19  Score=171.06  Aligned_cols=146  Identities=18%  Similarity=0.196  Sum_probs=111.9

Q ss_pred             cCCCCCcHhHHHHhc-CCHHHHHHHHhcCCCCCccCC--CCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCC
Q 045083          200 TNEEQNTPLHEAVRL-RRVDVVKILIKADPHVPYSAN--RNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEE  276 (556)
Q Consensus       200 ~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~  276 (556)
                      ....+.|+||.|+.. ++.++++.|++.+.++ +..+  .+|.||||+|+..|+.+++++|++++.+      ++..|..
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad------vn~~d~~  267 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGAN------VNQADSA  267 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTT
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC------CCCCCCC
Confidence            344567899999999 9999999999999885 5566  7899999999999999999999999874      6788899


Q ss_pred             CCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCC---CCCCCCCCCcHHHHHHh
Q 045083          277 QNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPS---PAHEGPDGKTALHAAVY  353 (556)
Q Consensus       277 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~---~~~~d~~g~t~L~~A~~  353 (556)
                      |+||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+..++.+++++|+..+..   ....+..+.|+++++..
T Consensus       268 G~TpLh~A~~~g~~~~v~~LL~~Gad~~-~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~  346 (368)
T 3jue_A          268 GRGPLHHATILGHTGLACLFLKRGADLG-ARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRD  346 (368)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHCcCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHH
Confidence            9999999999999999999999999986 7789999999999999999999998877533   44566777888877654

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.77  E-value=4.3e-19  Score=144.12  Aligned_cols=108  Identities=25%  Similarity=0.362  Sum_probs=86.3

Q ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCC
Q 045083          233 SANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSE  312 (556)
Q Consensus       233 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~  312 (556)
                      .+|.+|+||||+|+..|+.+++++|++.+.+      ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~   76 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD------VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN-ARSKDGN   76 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC------SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTT-CCCTTCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCCC
Confidence            3567788888888888888888888877763      45677788888888888888888888888888875 6677888


Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcH
Q 045083          313 TPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTA  347 (556)
Q Consensus       313 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~  347 (556)
                      ||||+|+..++.+++++|+++|++++.++..|.+|
T Consensus        77 tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           77 TPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             CTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence            88888888888888888888888888888888877

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.75  E-value=5.4e-18  Score=165.75  Aligned_cols=122  Identities=20%  Similarity=0.240  Sum_probs=60.7

Q ss_pred             CCcHhHHHHhc-CCHHHHHHHHhcCCCCccccc--CCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcH
Q 045083          131 QNTPLHEAVRL-RSVDVVKILIKADPHVSYSAN--RNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTP  207 (556)
Q Consensus       131 g~t~Lh~A~~~-g~~~~v~~Ll~~~~~~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~  207 (556)
                      +.|+||.|+.. |+.++++.|++.|.+++ ..+  ..|.||||+|+..|+.+++++|++++.+..      ..+..|.||
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn-~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn------~~d~~G~Tp  271 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAHGADVN-WVNGGQDNATPLIQATAANSLLACEFLLQNGANVN------QADSAGRGP  271 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHTTCCTT-CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT------CCCTTSCCH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHcCCCCC-ccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCC------CCCCCCCCH
Confidence            34455555555 55555555555555544 222  445555555555555555555555544322      144455555


Q ss_pred             hHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 045083          208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQN  260 (556)
Q Consensus       208 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  260 (556)
                      ||+|+..|+.+++++|+++++++ +..|.+|.||||+|+..|+.+++++|++.
T Consensus       272 Lh~A~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~  323 (368)
T 3jue_A          272 LHHATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLA  323 (368)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            55555555555555555555442 44444555555555555555555555443

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.73  E-value=8.5e-18  Score=136.41  Aligned_cols=108  Identities=27%  Similarity=0.368  Sum_probs=84.7

Q ss_pred             cccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCC
Q 045083           77 QANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPH  156 (556)
Q Consensus        77 ~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  156 (556)
                      .+|.+|.||||+|+..|+.+++++|++++.+                ++..|..|.||||+|+..|+.+++++|++.+++
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----------------~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~   67 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD----------------VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD   67 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC----------------SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----------------CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            4577888888888888888888888887766                455678888888888888888888888888888


Q ss_pred             CcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcH
Q 045083          157 VSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTP  207 (556)
Q Consensus       157 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~  207 (556)
                      ++ ..|..|.||||+|+..|+.+++++|++++++...      .+..|.+|
T Consensus        68 ~~-~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~------~~~~~~~~  111 (115)
T 2l6b_A           68 VN-ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA------RSWGSSHH  111 (115)
T ss_dssp             TT-CCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHH------HSCCCC--
T ss_pred             Cc-ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCc------CCcccccc
Confidence            76 6677888888888888888888888888766543      56666655

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.66  E-value=2.8e-16  Score=126.08  Aligned_cols=92  Identities=26%  Similarity=0.360  Sum_probs=72.7

Q ss_pred             hhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q 045083          271 EKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHA  350 (556)
Q Consensus       271 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~  350 (556)
                      ...|.+|.||||+|+..|+.+++++|++.|++++ .+|..|+||||+|+.+|+.+++++|+++|++++.+|..|+||||+
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~-~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~   96 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI   96 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHH
Confidence            4556778888888888888888888888888775 667888888888888888888888888888888888888888888


Q ss_pred             HHhcCChhHHHHH
Q 045083          351 AVYTYPTDILERV  363 (556)
Q Consensus       351 A~~~~~~~~~~~~  363 (556)
                      |+..++.++++.+
T Consensus        97 A~~~~~~~~~~~L  109 (110)
T 2zgd_A           97 SIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHh
Confidence            8888887776543

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.66  E-value=1.9e-16  Score=127.16  Aligned_cols=96  Identities=22%  Similarity=0.322  Sum_probs=78.8

Q ss_pred             ccccccccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHH
Q 045083           72 PSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILI  151 (556)
Q Consensus        72 ~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll  151 (556)
                      +......|.+|.||||+|+..|+.+++++|++.+.+                ++.+|..|.||||+|+..|+.+++++|+
T Consensus        14 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----------------i~~~d~~g~tpLh~A~~~~~~~~v~~Ll   77 (110)
T 2zgd_A           14 VPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGAD----------------VAAKDKNGSTPLHLAARNGHLEVVKLLL   77 (110)
T ss_dssp             --------CCHHHHHHHHHHHTCHHHHHHHHHTTCC----------------TTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCcccccCCccchHHHHHHHcCCHHHHHHHHHcCCC----------------CCccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            334556788899999999999999999999998876                4567889999999999999999999999


Q ss_pred             hcCCCCcccccCCCCcHHHHHHHcCCHHHHHHH
Q 045083          152 KADPHVSYSANRNSETLLYMAVANGSAEIVAEI  184 (556)
Q Consensus       152 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  184 (556)
                      ++|++++ ..|..|.||||+|+..|+.+++++|
T Consensus        78 ~~ga~~~-~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           78 EAGADVX-AQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HcCCCcc-ccccCCCcHHHHHHHcCCHHHHHHh
Confidence            9998876 6788899999999999999998876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	556
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-29
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-29
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-24
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-19
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-12
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-24
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-21
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-20
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-18
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.004
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-19
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-17
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.001
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-19
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-18
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-13
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-18
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-16
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-11
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-15
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-12
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-14
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-13
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.002
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-14
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-14
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-13
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-12
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	6e-13
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	6e-12
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.001
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.001
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	7e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	0.001
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	4e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	8e-06
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	8e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.001
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	7e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	7e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	5e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.002

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 2e-29
 Identities = 77/311 (24%), Positives = 126/311 (40%), Gaps = 53/311 (17%)

Query: 85  PLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSV 144
           PLH+A+  GH  IV+ L          L+RG          ++N +  TPLH A R    
Sbjct: 3   PLHVASFMGHLPIVKNL----------LQRGAS------PNVSNVKVETPLHMAARAGHT 46

Query: 145 DVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCP--------------- 189
           +V K L++    V+ +  ++ +T L+ A   G   +V  +L+N                 
Sbjct: 47  EVAKYLLQNKAKVN-AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHI 105

Query: 190 ------------QSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRN 237
                                   ++  TPLH A +  +V V ++L++ D H   +A +N
Sbjct: 106 AAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKN 164

Query: 238 SETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILI 297
             TPL++AV + + +IV  +L                    TPLH A +   V+VA+ L+
Sbjct: 165 GLTPLHVAVHHNNLDIVKLLLPRGGS------PHSPAWNGYTPLHIAAKQNQVEVARSLL 218

Query: 298 EADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPT 357
           +       + +    TPL++AA  G  ++VA +L K  +       G T LH        
Sbjct: 219 Q-YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHV 277

Query: 358 DILERVLIVRG 368
            +   VLI  G
Sbjct: 278 PV-ADVLIKHG 287

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (290), Expect = 8e-29
 Identities = 86/406 (21%), Positives = 145/406 (35%), Gaps = 78/406 (19%)

Query: 5   LYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFV 64
           L+ A+  G +   + + +      V++V   T LH+     H               E  
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHT--------------EVA 49

Query: 65  EQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLI-----------------VFANR 107
           + +L     +  +      +PLH AA+ GHT +V+ L+                   A R
Sbjct: 50  KYLLQNKAKVNAK-AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR 108

Query: 108 QPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSET 167
           +                    ++  TPLH A +   V V ++L++ D H + +A +N  T
Sbjct: 109 EGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN-AAGKNGLT 167

Query: 168 LLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKAD 227
            L++AV + + +IV  +L                    TPLH A +  +V+V + L++  
Sbjct: 168 PLHVAVHHNNLDIVKLLLPRGGS------PHSPAWNGYTPLHIAAKQNQVEVARSLLQ-Y 220

Query: 228 PHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRL 287
                + +    TPL++A   G AE+VA +L               N+   TPLH   + 
Sbjct: 221 GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ------ANGNLGNKSGLTPLHLVAQE 274

Query: 288 RSVDVAKILIEADPHV--------------------------------PYSANRNSETPL 315
             V VA +LI+    V                                  +  +   +PL
Sbjct: 275 GHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPL 334

Query: 316 YMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
           + AA  G   IV  +L+   SP     DG T L  A       + +
Sbjct: 335 HQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTD 380

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 2e-24
 Identities = 60/228 (26%), Positives = 101/228 (44%), Gaps = 19/228 (8%)

Query: 133 TPLHEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQ 190
           TPLH A  +  + +VK L++  A P+V   +N   ET L+MA   G  E+   +LQN  +
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNV---SNVKVETPLHMAARAGHTEVAKYLLQNKAK 58

Query: 191 SAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGS 250
                 +    ++  TPLH A R+   ++VK+L++ + +   +                 
Sbjct: 59  ------VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATT-------AGHTPLHI 105

Query: 251 AEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRN 310
           A     +                 ++  TPLH A +   V VA++L+E D H   +A +N
Sbjct: 106 AAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKN 164

Query: 311 SETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTD 358
             TPL++A  + ++ IV  +L +  SP     +G T LH A      +
Sbjct: 165 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVE 212

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.3 bits (215), Expect = 4e-19
 Identities = 52/269 (19%), Positives = 104/269 (38%), Gaps = 44/269 (16%)

Query: 5   LYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFV 64
           L+ A    +++  + +               T LH+   ++ + +               
Sbjct: 169 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVA-------------- 214

Query: 65  EQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQIL 124
            + L          + +G +PLHLAA++GH  +V  L+                  +   
Sbjct: 215 -RSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK----------------QANG 257

Query: 125 KMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEI 184
            + N+   TPLH   +   V V  +LIK    V  +  R   T L++A   G+ ++V  +
Sbjct: 258 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT-TRMGYTPLHVASHYGNIKLVKFL 316

Query: 185 LQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPL 242
           LQ+         +    +   +PLH+A +    D+V +L+K  A P+     + +  TPL
Sbjct: 317 LQHQ------ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE---VSSDGTTPL 367

Query: 243 YMAVANGSAEIVAEILQNCPESAARQMLE 271
            +A   G   +  ++L+   +  +  ++ 
Sbjct: 368 AIAKRLGYISVT-DVLKVVTDETSFVLVS 395

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.9 bits (201), Expect = 3e-17
 Identities = 46/236 (19%), Positives = 88/236 (37%), Gaps = 31/236 (13%)

Query: 78  ANAKGDSPLHLAAKKGHTAIVEFLI---------VFANRQPIDLERGVESAARQIL---- 124
           A   G +PLH+A    +  IV+ L+          +    P+ +                
Sbjct: 161 AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY 220

Query: 125 ----KMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEI 180
                  + +  TPLH A +    ++V +L+    +     N++  T L++    G   +
Sbjct: 221 GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPV 279

Query: 181 VAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSET 240
              ++++        M++ T     TPLH A     + +VK  +        +  +   +
Sbjct: 280 ADVLIKHGV------MVDATTRMGYTPLHVASHYGNIKLVK-FLLQHQADVNAKTKLGYS 332

Query: 241 PLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKIL 296
           PL+ A   G  +IV  +L+N           + + +  TPL  A RL  + V  +L
Sbjct: 333 PLHQAAQQGHTDIVTLLLKNGAS------PNEVSSDGTTPLAIAKRLGYISVTDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.5 bits (161), Expect = 2e-12
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 5/88 (5%)

Query: 279 TPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPS 336
           TPLH A  +  + + K L++  A P+V    N   ETPL+MAA  G  ++   +LQ    
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVS---NVKVETPLHMAARAGHTEVAKYLLQNKAK 58

Query: 337 PAHEGPDGKTALHAAVYTYPTDILERVL 364
              +  D +T LH A     T++++ +L
Sbjct: 59  VNAKAKDDQTPLHCAARIGHTNMVKLLL 86

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 5e-06
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 313 TPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRG 368
           TPL++A+  G + IV  +LQ+  SP       +T LH A     T++ +  L+   
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAK-YLLQNK 56

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 3e-24
 Identities = 49/295 (16%), Positives = 99/295 (33%), Gaps = 59/295 (20%)

Query: 78  ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
           A  + +  L  A +     +V+ L          LE G     +       E   TPLH 
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQL----------LEGGANVNFQ-----EEEGGWTPLHN 45

Query: 138 AVRLRSVDVVKILIKADPH--------------------------------VSYSANRNS 165
           AV++   D+V++L++                                         +   
Sbjct: 46  AVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYG 105

Query: 166 ETLLYMAVANGSAEIVAEILQNCP----QSAARQMLEKTNEEQNTPLHEAVRLRRVDVVK 221
            T    A   G  + +  + +       +   ++  E+  +   T L +A     V+V+K
Sbjct: 106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 165

Query: 222 ILIK---ADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQN 278
           IL+    AD +   +  RN+     ++  +   E +  +L +         +    E   
Sbjct: 166 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-----VNVRGERGK 220

Query: 279 TPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQK 333
           TPL  AV  + + + + L+E +       + + +T L +A      KI   + ++
Sbjct: 221 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.7 bits (229), Expect = 1e-21
 Identities = 54/278 (19%), Positives = 92/278 (33%), Gaps = 44/278 (15%)

Query: 130 EQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ--- 186
           E N  L +AV+   VD+V+ L++   +V++       T L+ AV     +IV  +L+   
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 187 ------------------------NCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKI 222
                                        +    + + +    T   EA    +V  +K 
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 223 LIKADP---------HVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKT 273
           L K                   +   T L  A   G  E++  +L               
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD-NMG 182

Query: 274 NEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETPLYMAAANGSVKIVAKIL 331
                  L  +       +  +L++  AD +V        +TPL +A     + +V ++L
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGADVNVR---GERGKTPLILAVEKKHLGLVQRLL 239

Query: 332 QKCP-SPAHEGPDGKTALHAAVYTYPTDILERVLIVRG 368
           ++          DGKTAL  AV      I E +L  RG
Sbjct: 240 EQEHIEINDTDSDGKTALLLAVELKLKKIAE-LLCKRG 276

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.8 bits (172), Expect = 3e-14
 Identities = 43/282 (15%), Positives = 96/282 (34%), Gaps = 41/282 (14%)

Query: 5   LYEAAAKGDIEPFREIARDELES-----IVTDVMKNTVLHVNIMRSHLTL---------- 49
           L +A    D++    + +  LE         +    T LH  +  S   +          
Sbjct: 9   LIKAVQNEDVD----LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64

Query: 50  --------QTEEGEISSESTEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFL 101
                    T     +   +  + ++     + + + +  G +    AA  G    ++FL
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124

Query: 102 IVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIK---ADPHVS 158
                         +    ++  +   +   T L +A     V+V+KIL+    AD +  
Sbjct: 125 Y------KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC 178

Query: 159 YSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVD 218
            +  RN+     ++  +   E +  +L +         +    E   TPL  AV  + + 
Sbjct: 179 DNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-----VNVRGERGKTPLILAVEKKHLG 233

Query: 219 VVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQN 260
           +V+ L++ +       + + +T L +AV     +I   + + 
Sbjct: 234 LVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 89.6 bits (221), Expect = 5e-20
 Identities = 39/339 (11%), Positives = 85/339 (25%), Gaps = 54/339 (15%)

Query: 5   LYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFV 64
           ++    K   +  + +               +  H   ++S +          S + + +
Sbjct: 50  IFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTL 109

Query: 65  EQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQIL 124
             +L     ++    A+      LAA+ GH  ++  L               E A  +I+
Sbjct: 110 CLLLT-SDEIVKVIQAENYQAFRLAAENGHLHVLNRLC--------------ELAPTEIM 154

Query: 125 KMTNEEQNTPLHEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVA 182
            M   E       A     + V+  L +       +     N     + AV  G   ++ 
Sbjct: 155 AMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVI- 213

Query: 183 EILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPL 242
                         L                     V   + +       +  +      
Sbjct: 214 ------------NFLLDCPVMLAYAEIHEFEYGEKYVNPFIARH-----VNRLKEMHDAF 256

Query: 243 YMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPH 302
            ++  +G  ++V             +            L        +D  + L+   P 
Sbjct: 257 KLSNPDGVFDLV------------TKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSI-PG 303

Query: 303 VPYSANRNS-----ETPLYMAAANGSVKIVAKILQKCPS 336
           +   A   +        L +A   G+      +L   PS
Sbjct: 304 IKALAPTATIPGDANELLRLALRLGNQGAC-ALLLSIPS 341

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 85.3 bits (210), Expect = 1e-18
 Identities = 40/358 (11%), Positives = 85/358 (23%), Gaps = 50/358 (13%)

Query: 1   MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSES 60
            D +L           F+        S++T   K   +H+ +  +    Q  +      +
Sbjct: 12  NDPQLRLIPWILWENLFQHFISANELSLMTLSYKE-AIHIFLPGTKNMEQVRQLLCLYYA 70

Query: 61  TEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAA 120
                           +   K +    +AA  G ++ ++ L +        L        
Sbjct: 71  HYNRNAKQLWSD--AHKKGIKSEVICFVAAITGCSSALDTLCLL-------LTSDEI--- 118

Query: 121 RQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADP-HVSYSANRNSETLLYMAVANGSAE 179
              +K+   E       A     + V+  L +  P  +       +     +A  NG   
Sbjct: 119 ---VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLH 175

Query: 180 IVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSE 239
           ++  + +  P  A         E        AV     +V+  L+     +         
Sbjct: 176 VLNRLCELAPTEATAM---IQAENYYAFRWAAVGRGHHNVINFLLDCPVML--------A 224

Query: 240 TPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEA 299
                    G   +   I ++              +E +     +      D+       
Sbjct: 225 YAEIHEFEYGEKYVNPFIARHVNR----------LKEMHDAFKLSNPDGVFDLVT----- 269

Query: 300 DPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCP-----SPAHEGPDGKTALHAAV 352
                          L        +  +  +L           A    D    L  A+
Sbjct: 270 --KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLAL 325

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 51.0 bits (121), Expect = 2e-07
 Identities = 23/175 (13%), Positives = 54/175 (30%), Gaps = 13/175 (7%)

Query: 201 NEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQ- 259
           N E +  L     +   ++ +  I A+     + +      +++       + V ++L  
Sbjct: 9   NYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQ-VRQLLCL 67

Query: 260 -----NCPESAARQMLEKTNEEQNTPLHEAVR---LRSVDVAKILIEADPHVPYSANRNS 311
                N           K   +       A       ++D   +L+ +D  V       +
Sbjct: 68  YYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIV-KVIQAEN 126

Query: 312 ETPLYMAAANGSVKIVAKILQKCPSPAHEGPD--GKTALHAAVYTYPTDILERVL 364
                +AA NG + ++ ++ +  P+            A   A       +L R+ 
Sbjct: 127 YQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLC 181

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.6 bits (86), Expect = 0.004
 Identities = 10/103 (9%), Positives = 33/103 (32%), Gaps = 18/103 (17%)

Query: 1   MDRKLYEAAAKGDIEPFREIARDELESIVTDVMK-NTVLHVNIMRSHLTLQTEEGEISSE 59
           M      +   G  +   +    +   ++ ++++ N  + ++ +R  L++   +    + 
Sbjct: 252 MHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTA 311

Query: 60  STEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLI 102
           +                      +  L LA + G+      L+
Sbjct: 312 TI-----------------PGDANELLRLALRLGNQGACALLL 337

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 87.1 bits (214), Expect = 1e-19
 Identities = 54/262 (20%), Positives = 93/262 (35%), Gaps = 27/262 (10%)

Query: 82  GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
             + LH  A        E LIV   ++ I    G +      +   + ++NTPL  AV  
Sbjct: 33  NRTVLHWIASNSSAEKSEDLIVHEAKECI--AAGAD------VNAMDCDENTPLMLAVLA 84

Query: 142 RSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTN 201
           R   +V  L+KA    +          L+ A AN    ++  +L +       + L++  
Sbjct: 85  RRRRLVAYLMKAGADPTIYNKSERSA-LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNG 143

Query: 202 EEQNTPLHEAVRLRRVDVVKILIKADPHVPY-------SANRNSETPLYMAVANGSAEIV 254
                 +       +V   K+L++    V Y       S      T L+ A    +  IV
Sbjct: 144 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIV 203

Query: 255 AEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSE 312
             ++            +K +E+  TP+  A +   ++V   LI+  A        +    
Sbjct: 204 KYLVGEKG-----SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA---VDATDH 255

Query: 313 TPLYMAAANGSVKIVAKILQKC 334
           T   +A AN    IV  I  +C
Sbjct: 256 TARQLAQANNHHNIV-DIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 81.3 bits (199), Expect = 1e-17
 Identities = 43/294 (14%), Positives = 91/294 (30%), Gaps = 38/294 (12%)

Query: 83  DSPLHLA-AKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
           +SP+ L     G  AI E +              V         +      T LH     
Sbjct: 1   ESPIKLHTEAAGSYAITEPIT----------RESVN-------IIDPRHNRTVLHWIASN 43

Query: 142 RSVDVVKILIKADPHVSYSA-------NRNSETLLYMAVANGSAEIVAEILQNCPQSAAR 194
            S +  + LI  +     +A       + +  T L +AV                   A 
Sbjct: 44  SSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRR------LVAYLMKAG 97

Query: 195 QMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIV 254
                 N+ + + LH+A   R   ++  ++ +          +      + +   +    
Sbjct: 98  ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRD 157

Query: 255 AEILQNCPESAARQM-------LEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSA 307
                        ++        +    +  T LH A ++ ++ + K L+          
Sbjct: 158 QVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQ 217

Query: 308 NRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
           + + +TP+ +AA  G +++V  ++Q+  S         TA   A      +I++
Sbjct: 218 DEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVD 271

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 59.0 bits (141), Expect = 3e-10
 Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 16/94 (17%)

Query: 60  STEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESA 119
           +   V+ ++    S   + +  G +P+ LAA++G   +V +LI          ++G    
Sbjct: 199 NMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLI----------QQGAS-- 246

Query: 120 ARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKA 153
               ++  +   +T    A      ++V I  + 
Sbjct: 247 ----VEAVDATDHTARQLAQANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 55.1 bits (131), Expect = 6e-09
 Identities = 50/247 (20%), Positives = 96/247 (38%), Gaps = 15/247 (6%)

Query: 133 TPLHEAVR-LRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQS 191
           +P+        S  + + + +    V+    R++ T+L+   +N SAE   +++ +  + 
Sbjct: 2   SPIKLHTEAAGSYAITEPITRES--VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKE 59

Query: 192 AARQ--MLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANG 249
                  +   + ++NTPL  AV  RR  +V  L+KA                + A AN 
Sbjct: 60  CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL-HQAAANR 118

Query: 250 SAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPY---- 305
              ++  +L +       + L++        +        V  AK+L+E    V Y    
Sbjct: 119 DFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA 178

Query: 306 ---SANRNSETPLYMAAANGSVKIVAKILQKCPSPA-HEGPDGKTALHAAVYTYPTDILE 361
              S      T L+ AA   ++ IV  ++ +  S    +  DGKT +  A      +++ 
Sbjct: 179 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM 238

Query: 362 RVLIVRG 368
             LI +G
Sbjct: 239 -YLIQQG 244

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 6/53 (11%), Positives = 18/53 (33%)

Query: 312 ETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVL 364
           E+P+ +         + + + +      +    +T LH        +  E ++
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLI 53

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.8 bits (208), Expect = 5e-19
 Identities = 47/258 (18%), Positives = 83/258 (32%), Gaps = 25/258 (9%)

Query: 82  GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
           GD+ LHLA    H   ++FL          L      A  + L + N+   T LH A  L
Sbjct: 9   GDTALHLAVIHQHEPFLDFL----------LGFS---AGHEYLDLQNDLGQTALHLAAIL 55

Query: 142 RSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCP----QSAARQML 197
                V+ L  A   V  +        L++A    +      +LQ  P     ++   + 
Sbjct: 56  GEASTVEKLYAAGAGVLVAERGGHTA-LHLACRVRAHTCACVLLQPRPSHPRDASDTYLT 114

Query: 198 EKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEI 257
           +  +   +T    A    + +        D    +     +E        + +       
Sbjct: 115 QSQDCTPDTSHAPAAVDSQPNPENEEEPRDED--WRLQLEAENYDGHTPLHVAVIHKDAE 172

Query: 258 LQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETPL 315
           +      A   + +       TPLH AV  ++  V ++L++  ADP           TPL
Sbjct: 173 MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA---RMYGGRTPL 229

Query: 316 YMAAANGSVKIVAKILQK 333
             A    +  +   +   
Sbjct: 230 GSALLRPNPILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.6 bits (205), Expect = 1e-18
 Identities = 52/263 (19%), Positives = 97/263 (36%), Gaps = 20/263 (7%)

Query: 123 ILKMTNEEQNTPLHEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEI 180
           +     E+ +T LH AV  +    +  L+   A        N   +T L++A   G A  
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAS- 59

Query: 181 VAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKA---------DPHVP 231
                      AA   +       +T LH A R+R      +L++          D ++ 
Sbjct: 60  -----TVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLT 114

Query: 232 YSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVD 291
            S +   +T    A  +       E      +      LE  N + +TPLH AV  +  +
Sbjct: 115 QSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL--QLEAENYDGHTPLHVAVIHKDAE 172

Query: 292 VAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAA 351
           + ++L +A   +         TPL++A    +  ++  +L+    P      G+T L +A
Sbjct: 173 MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA 232

Query: 352 VYTYPTDILERVLIVRGTFKPQE 374
           +      +   +L   G  +P++
Sbjct: 233 LLRPNPILAR-LLRAHGAPEPED 254

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.4 bits (163), Expect = 3e-13
 Identities = 55/276 (19%), Positives = 98/276 (35%), Gaps = 49/276 (17%)

Query: 35  NTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLC--PSLLFQANAKGDSPLHLAAKK 92
           +T LH+ ++  H                F++ +L        L   N  G + LHLAA  
Sbjct: 10  DTALHLAVIHQHE--------------PFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL 55

Query: 93  GHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIK 152
           G  + VE L                        +     +T LH A R+R+     +L++
Sbjct: 56  GEASTVEKLYAAGAGVL----------------VAERGGHTALHLACRVRAHTCACVLLQ 99

Query: 153 A---------DPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEE 203
                     D +++ S +   +T    A  +       E             LE  N +
Sbjct: 100 PRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL--QLEAENYD 157

Query: 204 QNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPE 263
            +TPLH AV  +  ++V++L  A   +         TPL++AV   +A ++  +L+   +
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217

Query: 264 SAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEA 299
                          TPL  A+   +  +A++L   
Sbjct: 218 ------PTARMYGGRTPLGSALLRPNPILARLLRAH 247

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (201), Expect = 2e-18
 Identities = 55/248 (22%), Positives = 102/248 (41%), Gaps = 26/248 (10%)

Query: 82  GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
           GD+PLH+A  +G+   V  L+    +   +L+            + N  + TPLH AV  
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD------------IYNNLRQTPLHLAVIT 50

Query: 142 RSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTN 201
               VV++L+ A                ++A  + S   +  +L +         LE  N
Sbjct: 51  TLPSVVRLLVTAGASPMALDRHGQTA-AHLACEHRSPTCLRALLDSAAPG--TLDLEARN 107

Query: 202 EEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNC 261
            +  T LH AV     + V++L++    +     ++  +PL  AV N S  +V  +LQ+ 
Sbjct: 108 YDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG 167

Query: 262 PESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETPLYMAA 319
                   +       ++ LH A     + + + L+   AD  +    N +++TPL +A 
Sbjct: 168 ------ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK---NCHNDTPLMVAR 218

Query: 320 ANGSVKIV 327
           +   + I+
Sbjct: 219 SRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 3e-06
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 16/86 (18%)

Query: 63  FVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQ 122
            + Q+L    + +      G S LH A+ +G   +V  L+            G +     
Sbjct: 158 SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLV----------RSGAD----- 202

Query: 123 ILKMTNEEQNTPLHEAVRLRSVDVVK 148
              + N   +TPL  A   R +D+++
Sbjct: 203 -SSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 29/228 (12%), Positives = 77/228 (33%), Gaps = 18/228 (7%)

Query: 5   LYEAAAKGDIEPFREIARDELESIV----TDVMKNTVLHVNIMRSHLTLQTEEGEISSES 60
           L+ A  +G++     +     +        + ++ T LH+ ++ +  ++        +  
Sbjct: 7   LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP 66

Query: 61  TEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAA 120
                             +      L  +A  G   +            + +    +   
Sbjct: 67  MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETV 126

Query: 121 RQILKMT-------NEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAV 173
           + +L+          +   +PL  AV   S+ +V++L++   +V+     +  + L+ A 
Sbjct: 127 QLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ-MYSGSSALHSAS 185

Query: 174 ANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVK 221
             G   +V  ++++             N   +TPL  A   R +D+++
Sbjct: 186 GRGLLPLVRTLVRSGAD------SSLKNCHNDTPLMVARSRRVIDILR 227

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (185), Expect = 3e-16
 Identities = 47/233 (20%), Positives = 90/233 (38%), Gaps = 15/233 (6%)

Query: 132 NTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQS 191
           N  +        ++ +K  I AD  ++   +++S T L+ A + G               
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAG------HTEIVEFLL 57

Query: 192 AARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSA 251
                +   ++   +PLH A    R ++VK L+     V  + N+N  TPL+ A +    
Sbjct: 58  QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRH 116

Query: 252 EIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNS 311
           EI   +L+           +  +  + T +H A    ++ +  IL+          +   
Sbjct: 117 EIAVMLLEGGAN------PDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST-NIQDTEG 169

Query: 312 ETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVL 364
            TPL++A     V+    ++ +  S   E  + KT L  A       IL+R++
Sbjct: 170 NTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGL-GLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 3e-11
 Identities = 42/240 (17%), Positives = 77/240 (32%), Gaps = 43/240 (17%)

Query: 5   LYEAAAKGDIEPFRE-IARDELESIVTDVMKNTVLHV------------------NIMRS 45
           +   A  G +E  +E I  D+  +  TD    T LH                    +   
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 46  HLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFA 105
                +     +S   + + + L    + +   N  G +PLH AA K    I   L    
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVML---- 122

Query: 106 NRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNS 165
                 LE G            +  + T +H A    ++ ++ IL+          +   
Sbjct: 123 ------LEGGAN------PDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST-NIQDTEG 169

Query: 166 ETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK 225
            T L++A      E    ++           +   N+E+ TPL  A       ++K +++
Sbjct: 170 NTPLHLACDEERVEEAKLLVSQGAS------IYIENKEEKTPLQVAKG-GLGLILKRMVE 222

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (174), Expect = 7e-15
 Identities = 47/218 (21%), Positives = 80/218 (36%), Gaps = 19/218 (8%)

Query: 82  GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
           GDS LHLA      A+   +I         L               N  Q TPLH AV  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN------------FQNNLQQTPLHLAVIT 49

Query: 142 RSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTN 201
              ++ + L+ A         R +   L++A   G    V  + Q+C       +L+ TN
Sbjct: 50  NQPEIAEALLGAGCDPELRDFRGNTP-LHLACEQGCLASVGVLTQSCTTPHLHSILKATN 108

Query: 202 EEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNC 261
              +T LH A     + +V++L+     V      N  T L++AV   + ++V+ +L+  
Sbjct: 109 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 168

Query: 262 PESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEA 299
            +            +  +P        S  + + L + 
Sbjct: 169 ADVNRV------TYQGYSPYQLTWGRPSTRIQQQLGQL 200

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (158), Expect = 1e-12
 Identities = 42/218 (19%), Positives = 81/218 (37%), Gaps = 4/218 (1%)

Query: 164 NSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKIL 223
           + ++ L++A+ +    +  E+++      A   L   N  Q TPLH AV   + ++ + L
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLA--FLNFQNNLQQTPLHLAVITNQPEIAEAL 58

Query: 224 IKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHE 283
           + A         R +    ++A   G    V  + Q+C       +L+ TN   +T LH 
Sbjct: 59  LGAGCDPELRDFRGNTPL-HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 117

Query: 284 AVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPD 343
           A     + + ++L+     V      N  T L++A    +  +V+ +L+           
Sbjct: 118 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 177

Query: 344 GKTALHAAVYTYPTDILERVLIVRGTFKPQEIQELSKN 381
           G +          T I +  L        Q + E    
Sbjct: 178 GYSPYQLTWGRPSTRIQQ-QLGQLTLENLQMLPESEDE 214

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 4e-04
 Identities = 7/24 (29%), Positives = 10/24 (41%)

Query: 79  NAKGDSPLHLAAKKGHTAIVEFLI 102
             +G SP  L   +  T I + L 
Sbjct: 175 TYQGYSPYQLTWGRPSTRIQQQLG 198

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.4 bits (176), Expect = 1e-14
 Identities = 42/299 (14%), Positives = 89/299 (29%), Gaps = 47/299 (15%)

Query: 56  ISSESTEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERG 115
           +  E  E    + +   +   +  +      H++       + +          ++L   
Sbjct: 47  LFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPN----TQLNLNIP 102

Query: 116 VESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVAN 175
           V           +E  NTPLH    + ++++VK L+K   +  Y  +   E+ L  AV +
Sbjct: 103 V-----------DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYG-DNMGESCLVKAVKS 150

Query: 176 GSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSAN 235
            +                   L   +    T LH            I+         +A 
Sbjct: 151 VNNYDSGTFEALL--DYLYPCLILEDSMNRTILHHI----------IITSGMTGCSAAAK 198

Query: 236 RNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKI 295
              +  +   V   +  I                 +    E+ +  ++    R   + + 
Sbjct: 199 YYLDILMGWIVKKQNRPI-----------------QSGTNEKESKPNDKNGERKDSILEN 241

Query: 296 LIEAD--PHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAV 352
           L       ++  + + N +T L +AA  G++ IV  +L     P      G   +    
Sbjct: 242 LDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.0 bits (162), Expect = 9e-13
 Identities = 32/251 (12%), Positives = 73/251 (29%), Gaps = 24/251 (9%)

Query: 133 TPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSA 192
             L   +     ++   L     + +     +++   +++  +   E+            
Sbjct: 41  AFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPN-----T 95

Query: 193 ARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAE 252
              +    +E  NTPLH    +  +++VK L+K   +     +   E+ L  AV + +  
Sbjct: 96  QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNY 154

Query: 253 IVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVD------------VAKILIEAD 300
                            L   +    T LH  +    +             +   +++  
Sbjct: 155 DSGTFEALL--DYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ 212

Query: 301 PHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPA---HEGPDGKTALHAAVYTYPT 357
                S     E+            I+  +  K         +  +G T L+ A      
Sbjct: 213 NRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNI 272

Query: 358 DILERVLIVRG 368
            I++  L+  G
Sbjct: 273 SIVD-ALLDYG 282

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 13/118 (11%), Positives = 39/118 (33%), Gaps = 5/118 (4%)

Query: 239 ETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE 298
           E  L   +     E+   +  +     +     +         H +      +V      
Sbjct: 40  EAFLQRLLFPEIQEMPTSLNNDSSNRNS-----EGGSSNQQQQHVSFDSLLQEVNDAFPN 94

Query: 299 ADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYP 356
              ++    + +  TPL+   +  ++++V  +++   +  +    G++ L  AV +  
Sbjct: 95  TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVN 152

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.5 bits (168), Expect = 5e-14
 Identities = 36/222 (16%), Positives = 74/222 (33%), Gaps = 9/222 (4%)

Query: 132 NTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQS 191
           N PLH+A        V+ L+ + P +    +++    L+ +V+  + EI + +L      
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 192 AARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSA 251
                    +                 V  +  +              T L++AV     
Sbjct: 61  --NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 118

Query: 252 EIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNS 311
           E+   +++N         +   ++    PLH A  + S+ + ++L           ++  
Sbjct: 119 EVSQFLIENG------ASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQG 172

Query: 312 ETPLYMAAANGSVKIVAKILQKCP-SPAHEGPDGKTALHAAV 352
            TPL+ A A G       +++K           G  A   A+
Sbjct: 173 WTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 214

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.7 bits (166), Expect = 8e-14
 Identities = 40/244 (16%), Positives = 86/244 (35%), Gaps = 23/244 (9%)

Query: 83  DSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLR 142
           + PLH A  +     V+ L+   + +P  L +             +++   PLH +V  +
Sbjct: 1   NYPLHQACMENEFFKVQELL---HSKPSLLLQ------------KDQDGRIPLHWSVSFQ 45

Query: 143 SVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNE 202
           + ++   L+    +V+     +        +A     +             +  L K   
Sbjct: 46  AHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPL--KPDLNKITN 103

Query: 203 EQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCP 262
           +  T LH AV  +  +V + LI+ +       ++ ++ PL+ A + GS ++         
Sbjct: 104 QGVTCLHLAVGKKWFEVSQFLIE-NGASVRIKDKFNQIPLHRAASVGSLKL-----IELL 157

Query: 263 ESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANG 322
               +  +   +++  TPL  A+     D A +L+E         +        +A    
Sbjct: 158 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ 217

Query: 323 SVKI 326
             K 
Sbjct: 218 VKKF 221

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.4 bits (142), Expect = 1e-10
 Identities = 38/268 (14%), Positives = 76/268 (28%), Gaps = 42/268 (15%)

Query: 35  NTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGH 94
           N  LH   M +                  V+++L   PSLL Q +  G  PLH +     
Sbjct: 1   NYPLHQACMENEF--------------FKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQA 46

Query: 95  TAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKAD 154
                            L +             +                 V  +  +  
Sbjct: 47  H----------EITSFLLSKMENV--NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPL 94

Query: 155 PHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRL 214
                       T L++AV     E+   +++N         +   ++    PLH A  +
Sbjct: 95  KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG------ASVRIKDKFNQIPLHRAASV 148

Query: 215 RRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTN 274
             + ++++L           ++   TPL+ A+A G  +    +++           +  +
Sbjct: 149 GSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE-----YDLVD 203

Query: 275 EEQNTPLHEAVRLRSVDVAKILIE--AD 300
            +       A+      V K  +    D
Sbjct: 204 NKGAKAEDVALNE---QVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.0 bits (133), Expect = 2e-09
 Identities = 22/155 (14%), Positives = 48/155 (30%), Gaps = 2/155 (1%)

Query: 205 NTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPES 264
           N PLH+A        V+ L+ + P +    +++   PL+ +V+  + EI + +L      
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 265 AARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSV 324
                    +                 V  +                 T L++A      
Sbjct: 61  --NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 118

Query: 325 KIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDI 359
           ++   +++   S   +    +  LH A       +
Sbjct: 119 EVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKL 153

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 68.2 bits (165), Expect = 3e-13
 Identities = 39/284 (13%), Positives = 86/284 (30%), Gaps = 32/284 (11%)

Query: 86  LHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVD 145
           +  A +K +  +  ++    + +P  ++R               +       A      +
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVVKRKK--------TKVKFDDGAVFLAACSSGDTE 54

Query: 146 VVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEE 203
            V  L++  AD +    AN +  T L+ A  + + ++V  +++N                
Sbjct: 55  EVLRLLERGADINY---ANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLH 111

Query: 204 QNTPLHEAVRLRRVDVVKILIKA--------------DPHVPYSANRNSETPLYMAVANG 249
                        +      + A              +       N  +   + +  A  
Sbjct: 112 AAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARK 171

Query: 250 SAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSA 307
             E +         ++      +  +   T LH A      +V K+LI+   D ++    
Sbjct: 172 EEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKD-- 229

Query: 308 NRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAA 351
             +  TPL+ AA  G  +    +++           G+TA   A
Sbjct: 230 -YDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA 272

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 65.9 bits (159), Expect = 2e-12
 Identities = 47/274 (17%), Positives = 94/274 (34%), Gaps = 49/274 (17%)

Query: 82  GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
             +    A   G T  V  L          LERG +      +   N +  T LH+A   
Sbjct: 40  DGAVFLAACSSGDTEEVLRL----------LERGAD------INYANVDGLTALHQACID 83

Query: 142 RSVDVVKILIKADPHVSYSANRNSETLLYM--------------------AVANGSAEIV 181
            +VD+VK L++   +++   N     L                       AV +     +
Sbjct: 84  DNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPL 143

Query: 182 AEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETP 241
               +   +   +  + +   +      E  R+   D  + L     +      ++  T 
Sbjct: 144 DIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND-VRHAKSGGTA 202

Query: 242 LYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--A 299
           L++A A G  E++  ++Q   +      +   + +  TPLH A      +  +IL+E   
Sbjct: 203 LHVAAAKGYTEVLKLLIQARYD------VNIKDYDGWTPLHAAAHWGKEEACRILVENLC 256

Query: 300 DPHVPYSANRNSETPLYMAAANGSVKIVAKILQK 333
           D       N+  +T   +A  +  +  + ++ +K
Sbjct: 257 DMEA---VNKVGQTAFDVADEDI-LGYLEELQKK 286

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 55.9 bits (133), Expect = 3e-09
 Identities = 36/228 (15%), Positives = 73/228 (32%), Gaps = 19/228 (8%)

Query: 77  QANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLH 136
            AN  G + LH A    +  +V+FL+            G             +     + 
Sbjct: 68  YANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLIS 127

Query: 137 EAVRLRSVD----VVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSA 192
           +   + +V+        + + +       N  +   + +  A    E +         ++
Sbjct: 128 QGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNS 187

Query: 193 ARQMLEKTNEEQNTPLHEAVRLRRVDVVKIL--IKADPHVPYSANRNSETPLYMAVANGS 250
                 +  +   T LH A      +V+K+L   + D ++      +  TPL+ A   G 
Sbjct: 188 GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKD---YDGWTPLHAAAHWGK 244

Query: 251 AEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE 298
            E    +++N  +      +E  N+   T    A      D+   L E
Sbjct: 245 EEACRILVENLCD------MEAVNKVGQTAFDVADE----DILGYLEE 282

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 20/121 (16%), Positives = 34/121 (28%), Gaps = 35/121 (28%)

Query: 30  TDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKGDSPLHLA 89
                 T LHV   + +                 V ++L      +   +  G +PLH A
Sbjct: 195 HAKSGGTALHVAAAKGYTE---------------VLKLLIQARYDVNIKDYDGWTPLHAA 239

Query: 90  AKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKI 149
           A  G       L+          E   +      ++  N+   T    A      D++  
Sbjct: 240 AHWGKEEACRILV----------ENLCD------MEAVNKVGQTAFDVADE----DILGY 279

Query: 150 L 150
           L
Sbjct: 280 L 280

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 21/115 (18%)

Query: 63  FVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQ 122
              Q L+       +    G + LH+AA KG+T +++ L     +   D+          
Sbjct: 180 DARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL----IQARYDVN--------- 226

Query: 123 ILKMTNEEQNTPLHEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVAN 175
              + + +  TPLH A      +  +IL++   D       N+  +T   +A  +
Sbjct: 227 ---IKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA---VNKVGQTAFDVADED 275

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 66.0 bits (159), Expect = 6e-13
 Identities = 42/219 (19%), Positives = 78/219 (35%), Gaps = 31/219 (14%)

Query: 60  STEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESA 119
           + + +  +L     L    +  G++ LHLAA+       + L+            G    
Sbjct: 1   TAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPL 60

Query: 120 ARQIL------------------KMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSA 161
              +                        +  TPL  A RL    +V+ LI AD  ++ +A
Sbjct: 61  HAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADIN-AA 119

Query: 162 NRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVK 221
           + + +T L+ A A  + E V  +L +          +  +++  TPL  A R    +  K
Sbjct: 120 DNSGKTALHWAAAVNNTEAVNILLMHH------ANRDAQDDKDETPLFLAAREGSYEASK 173

Query: 222 ILIK--ADPHVPYSANRNSETPLYMAVANGSAEIVAEIL 258
            L+   A+  +    +     P  +A      +IV  +L
Sbjct: 174 ALLDNFANREIT---DHMDRLPRDVASERLHHDIV-RLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 62.9 bits (151), Expect = 6e-12
 Identities = 47/237 (19%), Positives = 83/237 (35%), Gaps = 34/237 (14%)

Query: 97  IVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPH 156
           ++  L+           +G E  A       ++   T LH A R    D  K L+ A   
Sbjct: 4   VISDLL----------AQGAELNATM-----DKTGETSLHLAARFARADAAKRLLDAGAD 48

Query: 157 VSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRR 216
            +   N     L     A+        +        AR     T       L        
Sbjct: 49  ANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA------I 102

Query: 217 VDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEE 276
             +V+ LI AD  +  +A+ + +T L+ A A  + E V  +L +          +  +++
Sbjct: 103 EGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEAVNILLMHH------ANRDAQDDK 155

Query: 277 QNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETPLYMAAANGSVKIVAKIL 331
             TPL  A R  S + +K L++  A+  +    +     P  +A+      IV ++L
Sbjct: 156 DETPLFLAAREGSYEASKALLDNFANREIT---DHMDRLPRDVASERLHHDIV-RLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 31/178 (17%), Positives = 62/178 (34%), Gaps = 30/178 (16%)

Query: 219 VVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAA------------ 266
           V+  L+     +  + ++  ET L++A     A+    +L    ++ +            
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 63

Query: 267 ----------------RQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRN 310
                              L     +  TPL  A RL    + + LI AD  +  +A+ +
Sbjct: 64  VAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI-NAADNS 122

Query: 311 SETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRG 368
            +T L+ AAA  + + V  +L    +   +    +T L  A      +  +  L+   
Sbjct: 123 GKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASK-ALLDNF 179

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 8/51 (15%), Positives = 18/51 (35%)

Query: 289 SVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAH 339
           +  V   L+     +  + ++  ET L++AA         ++L        
Sbjct: 1   TAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANS 51

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.3 bits (124), Expect = 1e-08
 Identities = 24/145 (16%), Positives = 43/145 (29%), Gaps = 14/145 (9%)

Query: 160 SANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLR---R 216
           +        L  AV       + +   +      +  L   +E   T LH AVR      
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 60

Query: 217 VDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTN 274
           + +V  L++   +          +     +                      +  +E  N
Sbjct: 61  LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAE---------CLKLLLRGKASIEIAN 111

Query: 275 EEQNTPLHEAVRLRSVDVAKILIEA 299
           E   TPL  A RL+     ++L +A
Sbjct: 112 ESGETPLDIAKRLKHEHCEELLTQA 136

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.9 bits (123), Expect = 2e-08
 Identities = 29/155 (18%), Positives = 47/155 (30%), Gaps = 27/155 (17%)

Query: 80  AKGDSPLHL---AAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLH 136
           A   + LH    A K      +                GV+   +  L   +E   T LH
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQA----------YADGVDLTEKIPLANGHEPDETALH 50

Query: 137 EAVRLR---SVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQS 191
            AVR     S+ +V  L++   +          +     +                    
Sbjct: 51  LAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAE---------CLKLLL 101

Query: 192 AARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKA 226
             +  +E  NE   TPL  A RL+     ++L +A
Sbjct: 102 RGKASIEIANESGETPLDIAKRLKHEHCEELLTQA 136

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.7 bits (107), Expect = 2e-06
 Identities = 20/138 (14%), Positives = 41/138 (29%), Gaps = 9/138 (6%)

Query: 201 NEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPY---SANRNSETPLYMAVANGSAEIVA 255
              +   L EAV+ R +  +        D        + +   ET L++AV +     + 
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL- 61

Query: 256 EILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPL 315
            I+    +++     +                       +  +A   +    N + ETPL
Sbjct: 62  HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIA---NESGETPL 118

Query: 316 YMAAANGSVKIVAKILQK 333
            +A           + Q 
Sbjct: 119 DIAKRLKHEHCEELLTQA 136

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.2 bits (103), Expect = 7e-06
 Identities = 20/134 (14%), Positives = 40/134 (29%), Gaps = 8/134 (5%)

Query: 233 SANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLR---S 289
           +        L  AV       + +   +  +   +  L   +E   T LH AVR     S
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 60

Query: 290 VDVAKILIE--ADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTA 347
           + +   L++   +          +     +     + + +  +L+   S       G+T 
Sbjct: 61  LHIVDFLVQNSGNLDKQTGKGSTALHYCCL---TDNAECLKLLLRGKASIEIANESGETP 117

Query: 348 LHAAVYTYPTDILE 361
           L  A         E
Sbjct: 118 LDIAKRLKHEHCEE 131

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 20/103 (19%)

Query: 71  CPSLLFQANAKGDSPLHLAAK---KGHTAIVEFL-----------------IVFANRQPI 110
               L   +   ++ LHLA +   +    IV+FL                 + +      
Sbjct: 34  EKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDN 93

Query: 111 DLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKA 153
                +    +  +++ NE   TPL  A RL+     ++L +A
Sbjct: 94  AECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA 136

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 21/125 (16%), Positives = 34/125 (27%), Gaps = 27/125 (21%)

Query: 5   LYEAAAKGDIEPFREIARD------ELESIVTDVMKNTVLH------------------- 39
           L EA    DI    +   D      ++          T LH                   
Sbjct: 10  LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ 69

Query: 40  --VNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAI 97
              N+ +      T              ++L    + +  AN  G++PL +A +  H   
Sbjct: 70  NSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHC 129

Query: 98  VEFLI 102
            E L 
Sbjct: 130 EELLT 134

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 1e-07
 Identities = 21/153 (13%), Positives = 43/153 (28%), Gaps = 10/153 (6%)

Query: 84  SPLHLAAKKGHTAIVEFLI----------VFANRQPIDLERGVESAARQILKMTNEEQNT 133
           + L  AA +G    +  L+           F       ++ G    AR++L         
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 134 PLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAA 193
                  +        L      + + A+ N E        + +A+     +        
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 194 RQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKA 226
              +   N + +T    A    R +VV ++   
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 4e-05
 Identities = 19/167 (11%), Positives = 47/167 (28%), Gaps = 14/167 (8%)

Query: 133 TPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSA 192
             L  A     ++ +  L++ +       N N+         NG      ++++      
Sbjct: 3   NELASAAARGDLEQLTSLLQNN------VNVNA--------QNGFGRTALQVMKLGNPEI 48

Query: 193 ARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAE 252
           AR++L +              +        L      + + A+ N E        + +A+
Sbjct: 49  ARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK 108

Query: 253 IVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEA 299
                +           +   N + +T    A      +V  ++   
Sbjct: 109 EGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 4e-05
 Identities = 8/24 (33%), Positives = 11/24 (45%)

Query: 79  NAKGDSPLHLAAKKGHTAIVEFLI 102
           N KGD+   LA   G   +V  + 
Sbjct: 130 NHKGDTACDLARLYGRNEVVSLMQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.5 bits (111), Expect = 4e-07
 Identities = 22/165 (13%), Positives = 53/165 (32%), Gaps = 15/165 (9%)

Query: 132 NTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQS 191
              L EA R    D V+IL+         A   ++ L    +   +        +   ++
Sbjct: 3   GKKLLEAARAGQDDEVRILMANG------APFTTDWLGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 192 AARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSA 251
              +      +     +  +     +  V +   AD +            L+ A  +   
Sbjct: 57  GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMT---ALHWATEHNHQ 113

Query: 252 EIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKIL 296
           E+V  +++   +      +   ++   T    ++   + D+A+IL
Sbjct: 114 EVVELLIKYGAD------VHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.4 bits (108), Expect = 1e-06
 Identities = 19/157 (12%), Positives = 47/157 (29%), Gaps = 9/157 (5%)

Query: 205 NTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPES 264
              L EA R  + D V+IL+         A   ++      +   +        +    +
Sbjct: 3   GKKLLEAARAGQDDEVRILMANG------APFTTDWLGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 265 AARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSV 324
              +      +     +  +    ++    +   AD +            L+ A  +   
Sbjct: 57  GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMT---ALHWATEHNHQ 113

Query: 325 KIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
           ++V  +++       +    KTA   ++     D+ E
Sbjct: 114 EVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE 150

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.8 bits (104), Expect = 3e-06
 Identities = 27/175 (15%), Positives = 56/175 (32%), Gaps = 26/175 (14%)

Query: 85  PLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSV 144
            L  AA+ G    V  L          +  G       +   +                +
Sbjct: 5   KLLEAARAGQDDEVRIL----------MANGAPFTTDWL-GTSPLHLAAQYGHFSTTEVL 53

Query: 145 DVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQ 204
               +   A   V  +    + +  +  +     +  A++                   +
Sbjct: 54  LRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDML-------------K 100

Query: 205 NTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQ 259
            T LH A      +VV++LIK    V ++ ++  +T   +++ NG+ ++  EILQ
Sbjct: 101 MTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLA-EILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.1 bits (89), Expect = 3e-04
 Identities = 3/23 (13%), Positives = 9/23 (39%)

Query: 79  NAKGDSPLHLAAKKGHTAIVEFL 101
           +    +   ++   G+  + E L
Sbjct: 130 SKFCKTAFDISIDNGNEDLAEIL 152

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 8e-06
 Identities = 27/159 (16%), Positives = 49/159 (30%), Gaps = 12/159 (7%)

Query: 81  KGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVR 140
           +    L  AA +G    V  L+      P  L R  ++A + ++  +       L +   
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGAS 60

Query: 141 LRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQM---- 196
               D        D   +   +     + + A  N      A  +    Q     +    
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 197 -----LEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHV 230
                L + +    TPL  A++    D+V IL     H+
Sbjct: 121 AAESDLHRRDARGLTPLELALQRGAQDLVDILQG---HM 156

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 79  NAKGDSPLHLAAKKGHTAIVEFLI 102
           +A+G +PL LA ++G   +V+ L 
Sbjct: 130 DARGLTPLELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 3e-04
 Identities = 24/172 (13%), Positives = 48/172 (27%), Gaps = 18/172 (10%)

Query: 132 NTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQS 191
              L  A     V  V+ L+  +     + NR  +T L +        ++        + 
Sbjct: 3   GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV--------MMFGSTAIALEL 54

Query: 192 AARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSA 251
             +       +   T                ++          +     P+++AV     
Sbjct: 55  LKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE--- 111

Query: 252 EIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHV 303
                        AA   L + +    TPL  A++  + D+  IL     H+
Sbjct: 112 ----GHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQG---HM 156

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 8e-04
 Identities = 29/155 (18%), Positives = 50/155 (32%), Gaps = 4/155 (2%)

Query: 4   KLYEAAAKGDIEPFREIARDELESI-VTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTE 62
           +L  AAA+GD++  R +   EL      +    T L V +  S         + +S + +
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQ 64

Query: 63  FVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQ 122
                  +  +            +   A          L +    Q          AA  
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES 124

Query: 123 ILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHV 157
            L   +    TPL  A++  + D+V IL     H+
Sbjct: 125 DLHRRDARGLTPLELALQRGAQDLVDILQG---HM 156

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 28/170 (16%), Positives = 48/170 (28%), Gaps = 19/170 (11%)

Query: 163 RNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKI 222
           R  + L   A A G  + V  +L            +  N    T L   +       +++
Sbjct: 1   RAGDRLS-GAAARGDVQEVRRLLHRELVH-----PDALNRFGKTALQVMMFGSTAIALEL 54

Query: 223 LIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLH 282
           L +         +  S                  +            +   +     P+H
Sbjct: 55  LKQGASPNVQDTSGTSPVHDAA--------RTGFLDTLKVLVEHGADVNVPDGTGALPIH 106

Query: 283 EAVRLRSVDVAKILIE-ADPHVPYSANRNSETPLYMAAANGSVKIVAKIL 331
            AV+     V   L   +D H     +    TPL +A   G+  +V  IL
Sbjct: 107 LAVQEGHTAVVSFLAAESDLHR---RDARGLTPLELALQRGAQDLV-DIL 152

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 7e-05
 Identities = 23/145 (15%), Positives = 36/145 (24%), Gaps = 23/145 (15%)

Query: 82  GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
               L  AA +G    V  L+                             N P     R 
Sbjct: 3   SADWLATAAARGRVEEVRALL-----------------------EAGANPNAPNSYGRRP 39

Query: 142 RSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTN 201
             V ++     A+  + + A  N      +      A     +        A   L+  +
Sbjct: 40  IQVMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRD 99

Query: 202 EEQNTPLHEAVRLRRVDVVKILIKA 226
                P+  A  L   DV + L  A
Sbjct: 100 AWGRLPVDLAEELGHRDVARYLRAA 124

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 7e-04
 Identities = 27/135 (20%), Positives = 41/135 (30%), Gaps = 13/135 (9%)

Query: 165 SETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILI 224
           S   L  A A G  E V             + L +     N P     R  +V ++    
Sbjct: 3   SADWLATAAARGRVEEV-------------RALLEAGANPNAPNSYGRRPIQVMMMGSAR 49

Query: 225 KADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEA 284
            A+  + + A  N   P  +      A     +        A   L+  +     P+  A
Sbjct: 50  VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLA 109

Query: 285 VRLRSVDVAKILIEA 299
             L   DVA+ L  A
Sbjct: 110 EELGHRDVARYLRAA 124

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.0 bits (86), Expect = 5e-04
 Identities = 24/114 (21%), Positives = 36/114 (31%), Gaps = 7/114 (6%)

Query: 238 SETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILI 297
            +     A+ NG  + V + +    +        +          +   L  + +    I
Sbjct: 2   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 61

Query: 298 EADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAA 351
            A             TPL  A   G V  V  +L K      +GPDG TAL A 
Sbjct: 62  NAPDKHHI-------TPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT 108

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 19/128 (14%), Positives = 39/128 (30%), Gaps = 12/128 (9%)

Query: 132 NTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQS 191
           +     A++   +D VK  +     V+ +     + L Y            ++       
Sbjct: 3   DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYA-------ADCGQLEILEFLL 55

Query: 192 AARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSA 251
                +   ++   TPL  AV    V  VK+ + +          +  T L         
Sbjct: 56  LKGADINAPDKHHITPLLSAVYEGHVSCVKL-LLSKGADKTVKGPDGLTALEAT----DN 110

Query: 252 EIVAEILQ 259
           + +  +LQ
Sbjct: 111 QAIKALLQ 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	556
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.98
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.92
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.92
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.91
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.88
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.87
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.86
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.86
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.85
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.84
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.81
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.81

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-45  Score=368.03  Aligned_cols=338  Identities=23%  Similarity=0.311  Sum_probs=283.1

Q ss_pred             HHHHHHHhcCCchHHHHhhhhhcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCCC
Q 045083            3 RKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKG   82 (556)
Q Consensus         3 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g   82 (556)
                      ++||.||..|+.++|++|+++|++++..|..|+||||+|+..|+.           +++++|++.    +..++.++.+|
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~-----------~iv~~Ll~~----gadi~~~~~~g   66 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHT-----------EVAKYLLQN----KAKVNAKAKDD   66 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCH-----------HHHHHHHHH----TCCSSCCCTTS
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH-----------HHHHHHHHC----cCCCCCCCCCC
Confidence            589999999999999999999999999999999999999999999           999999554    56788999999


Q ss_pred             ChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhH-----------HHH------HHHhhhccCCCcHhHHHHhcCCHH
Q 045083           83 DSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVES-----------AAR------QILKMTNEEQNTPLHEAVRLRSVD  145 (556)
Q Consensus        83 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~-----------~~~------~~l~~~~~~g~t~Lh~A~~~g~~~  145 (556)
                      .||||+|+..|+.+++++|++...............           ...      ......+..+.++++.|+..++.+
T Consensus        67 ~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~  146 (408)
T d1n11a_          67 QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR  146 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHH
Confidence            999999999999999999998876542211110000           000      013344667788888888888888


Q ss_pred             HHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHH--------------------H-------Hhh
Q 045083          146 VVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAAR--------------------Q-------MLE  198 (556)
Q Consensus       146 ~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~--------------------~-------~~~  198 (556)
                      ++++|++++.++. ..+..|.+||++|+..|+.+++++|++++.+....                    .       ...
T Consensus       147 ~v~~ll~~~~~~~-~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~  225 (408)
T d1n11a_         147 VAELLLERDAHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN  225 (408)
T ss_dssp             HHHHHHHTTCCTT-CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHcCCCCC-cCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhcccccc
Confidence            8888888888776 66777888888888888888888888776442100                    0       011


Q ss_pred             hcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCC
Q 045083          199 KTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQN  278 (556)
Q Consensus       199 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~  278 (556)
                      ..+..+.||||.|+..++.++++.++...... +..+..|.||++.|+..++.+++++|++.+.+      ++..+..+.
T Consensus       226 ~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~------~~~~~~~~~  298 (408)
T d1n11a_         226 AESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM------VDATTRMGY  298 (408)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC------TTCCCSSCC
T ss_pred             ccCCCCCCHHHHHHHhCcHhHhhhhhcccccc-ccccCCCCChhhhhhhcCcHHHHHHHHHCCCc------ccccccccc
Confidence            24567889999999999999999999987774 67888999999999999999999999999875      456778899


Q ss_pred             chhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChh
Q 045083          279 TPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTD  358 (556)
Q Consensus       279 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~  358 (556)
                      ||||.++..++.++++++++.|.+++ .+|..|+||||+|+++|+.++|++|+++|++++.+|++|+||||+|++.|+.+
T Consensus       299 t~L~~~~~~~~~~~~~~ll~~g~~in-~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~  377 (408)
T d1n11a_         299 TPLHVASHYGNIKLVKFLLQHQADVN-AKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYIS  377 (408)
T ss_dssp             CHHHHHHHSSCSHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHH
T ss_pred             ccchhhcccCcceeeeeecccccccc-ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            99999999999999999999999986 78999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHH
Q 045083          359 ILERVL  364 (556)
Q Consensus       359 ~~~~~~  364 (556)
                      +++.+.
T Consensus       378 iv~~L~  383 (408)
T d1n11a_         378 VTDVLK  383 (408)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887653

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-38  Score=315.92  Aligned_cols=287  Identities=29%  Similarity=0.362  Sum_probs=244.0

Q ss_pred             eeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhh
Q 045083           36 TVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERG  115 (556)
Q Consensus        36 t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~  115 (556)
                      ||||+||..|+.           ++++.|++   . +..++..|.+|+||||+|+.+|+.++|++|+++|++        
T Consensus         2 TpL~~Aa~~g~~-----------~~v~~Ll~---~-g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad--------   58 (408)
T d1n11a_           2 TPLHVASFMGHL-----------PIVKNLLQ---R-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK--------   58 (408)
T ss_dssp             CHHHHHHHHTCH-----------HHHHHHHH---T-TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC--------
T ss_pred             ChHHHHHHCcCH-----------HHHHHHHH---C-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCC--------
Confidence            899999999999           99999954   4 567888999999999999999999999999999987        


Q ss_pred             hhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCc--------------------------------ccccC
Q 045083          116 VESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVS--------------------------------YSANR  163 (556)
Q Consensus       116 ~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~--------------------------------~~~~~  163 (556)
                              ++.+|.+|.||||+|+..|+.+++++|++..++..                                ...+.
T Consensus        59 --------i~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (408)
T d1n11a_          59 --------VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTK  130 (408)
T ss_dssp             --------SSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT
T ss_pred             --------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhccccccccccccccccccccc
Confidence                    56689999999999999999999999997654321                                13456


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHH
Q 045083          164 NSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLY  243 (556)
Q Consensus       164 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~  243 (556)
                      .+.++++.|+..++.+++++|++++.....      .+.+|.+|||.|+..|+.+++++|++++++. +..+..|.||+|
T Consensus       131 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~------~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~t~l~  203 (408)
T d1n11a_         131 KGFTPLHVAAKYGKVRVAELLLERDAHPNA------AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLH  203 (408)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTC------CCSSCCCHHHHHHHTTCHHHHHHHGGGTCCS-CCCCTTCCCHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCCCc------CCCcCchHHHHHHHcCCHHHHHHHHhcCCcc-cccCCCCCCcch
Confidence            788999999999999999999999866432      6889999999999999999999999998774 455555555555


Q ss_pred             HHHHcCCH---------------------------------HHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCH
Q 045083          244 MAVANGSA---------------------------------EIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSV  290 (556)
Q Consensus       244 ~A~~~g~~---------------------------------~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~  290 (556)
                      .++...+.                                 ++++.+.+...      ..+..+..|.||++.|++.++.
T Consensus       204 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~------~~~~~~~~g~~~l~~a~~~~~~  277 (408)
T d1n11a_         204 IAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQA------NGNLGNKSGLTPLHLVAQEGHV  277 (408)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC------CTTCCCTTCCCHHHHHHHHTCH
T ss_pred             hhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhcccc------ccccccCCCCChhhhhhhcCcH
Confidence            55555444                                 44444444433      2345678899999999999999


Q ss_pred             HHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHHHHHHhh
Q 045083          291 DVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVR  367 (556)
Q Consensus       291 ~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~~~~~~  367 (556)
                      +++++|+++|++++ ..+..+.||||.++..++.++++++++.|++++.+|.+|+||||+|++.++.++++.++..+
T Consensus       278 ~i~~~Ll~~g~~~~-~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~G  353 (408)
T d1n11a_         278 PVADVLIKHGVMVD-ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG  353 (408)
T ss_dssp             HHHHHHHHHTCCTT-CCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCccc-cccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            99999999999976 66788999999999999999999999999999999999999999999999999999998754

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.8e-36  Score=279.75  Aligned_cols=240  Identities=22%  Similarity=0.217  Sum_probs=157.3

Q ss_pred             ccccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCC
Q 045083           76 FQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADP  155 (556)
Q Consensus        76 ~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~  155 (556)
                      ...+.+|+||||+||+.|+.+++++|++++++...             ++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~-------------i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga   69 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEY-------------LDLQNDLGQTALHLAAILGEASTVEKLYAAGA   69 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGG-------------GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-------------ccCcCCCCCCccchHHhhcccccccccccccc
Confidence            45689999999999999999999999999876322             56788999999999999999999999999999


Q ss_pred             CCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHH----HHhhhcCCCCCcHhHHHHhc---CCHHHHHHHH-hcC
Q 045083          156 HVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAAR----QMLEKTNEEQNTPLHEAVRL---RRVDVVKILI-KAD  227 (556)
Q Consensus       156 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~----~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll-~~~  227 (556)
                      +++ ..|..|.||||+|+..|+.+++++|++........    ...........+....+...   ........+. ..+
T Consensus        70 ~i~-~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (255)
T d1oy3d_          70 GVL-VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWR  148 (255)
T ss_dssp             CSS-CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGG
T ss_pred             ccc-ccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcC
Confidence            987 78899999999999999999999998876432100    00000001111111111111   0111111111 111


Q ss_pred             CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccc
Q 045083          228 PHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSA  307 (556)
Q Consensus       228 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  307 (556)
                      .. .+.+|.+|.||||+|+..++.+++++|++.+.+.     ...++..|.||||+|++.|+.+++++|+++|++++ .+
T Consensus       149 ~~-in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~-----~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin-~~  221 (255)
T d1oy3d_         149 LQ-LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL-----NKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT-AR  221 (255)
T ss_dssp             GG-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-----TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CC
T ss_pred             cc-cccccccCcccccccccccccccccchhcccccc-----cccccccccccccccccccHHHHHHHHHHCCCCCC-CC
Confidence            12 2445666677777777777777777776666532     12344566677777777777777777777666654 55


Q ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 045083          308 NRNSETPLYMAAANGSVKIVAKILQKCPS  336 (556)
Q Consensus       308 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~  336 (556)
                      |..|+||||+|+.+++.+++++|+++|++
T Consensus       222 d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         222 MYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             CTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            66677777777777777777776666664

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-34  Score=259.56  Aligned_cols=219  Identities=24%  Similarity=0.270  Sum_probs=200.7

Q ss_pred             CCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHH
Q 045083          131 QNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHE  210 (556)
Q Consensus       131 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~  210 (556)
                      +++.|+.++..|+.+.++.+++.++......|..|.||||+|+..|+.++++++++.......      .+..+.++++.
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~------~~~~~~~~~~~   76 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND------KDDAGWSPLHI   76 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCC------CCTTCCCHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccccc------ccccccccccc
Confidence            578899999999999999999888877778999999999999999999999999999866543      57788999999


Q ss_pred             HHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCH
Q 045083          211 AVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSV  290 (556)
Q Consensus       211 A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~  290 (556)
                      ++..++.+++++|++++.++ +..|.+|.||||+|+..|+.+++++|++++.+      ++.++..|.||||+|+..++.
T Consensus        77 ~~~~~~~~i~~~Ll~~~~d~-~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d------~~~~~~~~~t~L~~a~~~~~~  149 (223)
T d1uoha_          77 AASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN------PDAKDHYEATAMHRAAAKGNL  149 (223)
T ss_dssp             HHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCH
T ss_pred             cccccccchhHHHhccCcee-EeeCCCCCchhhHHHHcCCHHHHHHHHHCCCC------CCCcCCCCCccchhhhhcCCc
Confidence            99999999999999999884 78999999999999999999999999999874      467889999999999999999


Q ss_pred             HHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHHHHH
Q 045083          291 DVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVL  364 (556)
Q Consensus       291 ~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~~~  364 (556)
                      +++++|++.+.+++ .+|..|+||||+|+.+|+.+++++|+++|++++.+|.+|+||||+|. .++.++++.++
T Consensus       150 ~~~~~L~~~~~~i~-~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~-~~~~~i~~~Ll  221 (223)
T d1uoha_         150 KMIHILLYYKASTN-IQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMV  221 (223)
T ss_dssp             HHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCC-TTHHHHHHHHH
T ss_pred             chhhhhccccceee-eccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-CCCHHHHhccc
Confidence            99999999999976 78999999999999999999999999999999999999999999984 57777777665

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-33  Score=257.77  Aligned_cols=220  Identities=23%  Similarity=0.298  Sum_probs=198.5

Q ss_pred             CChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccc
Q 045083           82 GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSA  161 (556)
Q Consensus        82 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  161 (556)
                      +.+.|+.+|..|+.+.|+.+++.....               ++.+|..|+||||+|+..|+.+++++|++.+.... ..
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~---------------~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~-~~   66 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSL---------------ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DK   66 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGG---------------GGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC-CC
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCc---------------CcCcCCCCCCHHHHHHHhhhhcccccccccccccc-cc
Confidence            457899999999999998888654331               67789999999999999999999999999988876 56


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCH
Q 045083          162 NRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETP  241 (556)
Q Consensus       162 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~  241 (556)
                      +..+.++++.++..|+.+++++|++++.+..      ..+..|.||||.|+..|+.+++++|++++.++ +..+.+|.||
T Consensus        67 ~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~------~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~~~~t~  139 (223)
T d1uoha_          67 DDAGWSPLHIAASAGRDEIVKALLGKGAQVN------AVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATA  139 (223)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCH
T ss_pred             cccccccccccccccccchhHHHhccCceeE------eeCCCCCchhhHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcc
Confidence            6788999999999999999999999987643      37999999999999999999999999999884 7889999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHc
Q 045083          242 LYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAAN  321 (556)
Q Consensus       242 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  321 (556)
                      ||+|+..++.+++++|.+.+.+      ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|.+|+||||+| +.
T Consensus       140 L~~a~~~~~~~~~~~L~~~~~~------i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~-~~d~~g~tpl~~A-~~  211 (223)
T d1uoha_         140 MHRAAAKGNLKMIHILLYYKAS------TNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIY-IENKEEKTPLQVA-KG  211 (223)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC------SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHC-CT
T ss_pred             chhhhhcCCcchhhhhccccce------eeeccCCCCceeccccccCcHHHHHHHHHCCCCCC-CCCCCCCCHHHHH-HC
Confidence            9999999999999999998874      67889999999999999999999999999999986 7899999999998 57


Q ss_pred             CCHHHHHHHHh
Q 045083          322 GSVKIVAKILQ  332 (556)
Q Consensus       322 ~~~~~v~~Ll~  332 (556)
                      |+.+++++||+
T Consensus       212 ~~~~i~~~Ll~  222 (223)
T d1uoha_         212 GLGLILKRMVE  222 (223)
T ss_dssp             THHHHHHHHHC
T ss_pred             CCHHHHhcccC
Confidence            99999998764

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-33  Score=264.23  Aligned_cols=236  Identities=21%  Similarity=0.233  Sum_probs=183.3

Q ss_pred             hhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCc--ccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCC
Q 045083          126 MTNEEQNTPLHEAVRLRSVDVVKILIKADPHVS--YSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEE  203 (556)
Q Consensus       126 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~  203 (556)
                      ..+++|+||||+|++.|+.+++++|++.+++..  ...|..|.||||+|+..|+.+++++|++++.+...      .+.+
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~------~d~~   77 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV------AERG   77 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC------CCTT
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccc------cccc
Confidence            467899999999999999999999999876633  36778899999999999999999999999876433      7899


Q ss_pred             CCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCC---------CCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcC
Q 045083          204 QNTPLHEAVRLRRVDVVKILIKADPHVPYSANR---------NSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTN  274 (556)
Q Consensus       204 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~---------~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  274 (556)
                      |.||||.|+..++.++++.|++...........         .+.+....+..................  ....++.+|
T Consensus        78 g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~in~~d  155 (255)
T d1oy3d_          78 GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDED--WRLQLEAEN  155 (255)
T ss_dssp             SCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCC--GGGGTTCCC
T ss_pred             cchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhh--cCccccccc
Confidence            999999999999999999999876543211111         011111111111111011111111111  111456788


Q ss_pred             CCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhc
Q 045083          275 EEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYT  354 (556)
Q Consensus       275 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~  354 (556)
                      ..|.||||+|+.+++.+++++|++.+.+.....+..|.||||+|++.|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus       156 ~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~  235 (255)
T d1oy3d_         156 YDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLR  235 (255)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTS
T ss_pred             ccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Confidence            99999999999999999999999999999877788999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHhhCC
Q 045083          355 YPTDILERVLIVRGT  369 (556)
Q Consensus       355 ~~~~~~~~~~~~~~~  369 (556)
                      ++.++++.++.++..
T Consensus       236 ~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         236 PNPILARLLRAHGAP  250 (255)
T ss_dssp             SCHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHcCCC
Confidence            999999999877553

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-33  Score=264.47  Aligned_cols=271  Identities=18%  Similarity=0.219  Sum_probs=208.1

Q ss_pred             CCCeeEEeeeccccccccccccccccchHHHHHHHHhhCcccccc-ccCCCChHHHHHHHhCcHHHHHHHHHHhccCCch
Q 045083           33 MKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQ-ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPID  111 (556)
Q Consensus        33 ~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~  111 (556)
                      +++|+||.|+++|+.           +++++|   ++.+ .+++. .+..|+||||+|+..|+.+++++|++.+..    
T Consensus         4 ~~~~~L~~Ai~~~~~-----------e~vk~L---l~~G-~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~----   64 (285)
T d1wdya_           4 EDNHLLIKAVQNEDV-----------DLVQQL---LEGG-ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD----   64 (285)
T ss_dssp             HHHHHHHHHHHTTCH-----------HHHHHH---HHTT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----
T ss_pred             CCcHHHHHHHHcCCH-----------HHHHHH---HHCC-CCcCccCCCCCCCHHHHHHHcCCHHHhhhhcccccc----
Confidence            356888889999988           888888   4444 44443 445788999999999999999988887765    


Q ss_pred             hhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCCh
Q 045083          112 LERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQS  191 (556)
Q Consensus       112 ~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~  191 (556)
                                  ....+..+.+|.+.+...+..+.....++...+.. ..+..+.++++.|+..|+...++.++......
T Consensus        65 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~  131 (285)
T d1wdya_          65 ------------PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANV  131 (285)
T ss_dssp             ------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             ------------ccccccccchhhHHHhhcCCccccchhhhhccccc-ccccCCCchhHHHHHhcchhhhhhhhhhcccc
Confidence                        33456678888888888888888888888776654 56778888999998888888888888765432


Q ss_pred             h----HHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcC----CHHHHHHHHHcCCh
Q 045083          192 A----ARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANG----SAEIVAEILQNCPE  263 (556)
Q Consensus       192 ~----~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g----~~~~v~~Ll~~~~~  263 (556)
                      .    ...........|.||||.|+++|+.+++++|+++.....+..+..|.++++.+...+    ..+++++|++.+.+
T Consensus       132 ~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~  211 (285)
T d1wdya_         132 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD  211 (285)
T ss_dssp             TCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC
T ss_pred             cccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCC
Confidence            1    111233366778889999999888899988887643335777888888877765443    35688888888764


Q ss_pred             hHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhc-CCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q 045083          264 SAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEA-DPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGP  342 (556)
Q Consensus       264 ~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~  342 (556)
                            ++.++..|.||||.|++.|+.+++++|++. |.+++ .+|.+|+||||+|+++|+.+++++||++|+++|.+|.
T Consensus       212 ------~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din-~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         212 ------VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN-DTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             ------SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             ------CCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCc-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence                  456778888999999998889999888875 55654 7788888999999999999999988888988888773

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.8e-33  Score=253.83  Aligned_cols=225  Identities=19%  Similarity=0.217  Sum_probs=134.5

Q ss_pred             ChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCc--cc
Q 045083           83 DSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVS--YS  160 (556)
Q Consensus        83 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~--~~  160 (556)
                      .||||+||..|+.++|+.|++.....               ++.+|.+|+||||+|+..|+.+++++|+++|++++  ..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~---------------~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~   65 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSL---------------LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY   65 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGG---------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGC
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCc---------------ccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccc
Confidence            37888888888888888887754321               45677888888888888888888888888777654  23


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCC
Q 045083          161 ANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSET  240 (556)
Q Consensus       161 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t  240 (556)
                      .+..|.+|+++++..+..++++.++..+.....    ...+..+.++++.++..++.++++.|++.+... ...+.+|+|
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t  140 (229)
T d1ixva_          66 PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL----NKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQI  140 (229)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCT----TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCC
T ss_pred             ccccccccccccccccccccccccccccccccc----cccccccccccccccccchhhhhhhhhhhcccc-cccCCCCCC
Confidence            455666777777777777776666655432211    113445556666666666666666666555553 444555555


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHh-cCCCCCccccCCCCCHHHHHH
Q 045083          241 PLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE-ADPHVPYSANRNSETPLYMAA  319 (556)
Q Consensus       241 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~g~t~L~~A~  319 (556)
                      |||+|+..|+.+++++|++.+..     .++.+|..|+||||+|+++|+.+++++|++ .|++++ .+|..|+||||+|+
T Consensus       141 ~l~~a~~~~~~~~~~~Ll~~~~~-----~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~-~~d~~g~t~l~~A~  214 (229)
T d1ixva_         141 PLHRAASVGSLKLIELLCGLGKS-----AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD-LVDNKGAKAEDVAL  214 (229)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCC-----CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSC-CCCTTSCCTGGGCS
T ss_pred             ccchhhhcccccccccccccccc-----cccccccccCCchhhhcccccHHHHHHHHHhcCCCCC-CcCCCCCCHHHHHh
Confidence            55555555555555555555432     134445555555555555555555555554 244443 44555555555554


Q ss_pred             HcCCHHHHHHHHhcCCC
Q 045083          320 ANGSVKIVAKILQKCPS  336 (556)
Q Consensus       320 ~~~~~~~v~~Ll~~~~~  336 (556)
                      .   .+++++|+++|+|
T Consensus       215 ~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         215 N---EQVKKFFLNNVVD  228 (229)
T ss_dssp             C---HHHHHHHHHHCCC
T ss_pred             h---HHHHHHHHHcCCC
Confidence            2   3455555555543

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-31  Score=253.93  Aligned_cols=265  Identities=20%  Similarity=0.246  Sum_probs=226.7

Q ss_pred             CCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCccc
Q 045083           81 KGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYS  160 (556)
Q Consensus        81 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~  160 (556)
                      ++.|+||.|+++|+.++|++|+++|++.+.               ..+..|.||||+|+..|+.+++++|++.+.... .
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~---------------~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~-~   67 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNF---------------QEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-L   67 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTC---------------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-C
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCc---------------cCCCCCCCHHHHHHHcCCHHHhhhhcccccccc-c
Confidence            356999999999999999999999987321               234679999999999999999999999998876 6


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCC---------
Q 045083          161 ANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVP---------  231 (556)
Q Consensus       161 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~---------  231 (556)
                      .+..+.+|.+.++..+..+.....++.......      .+..+.++++.|+..++...++.++....+..         
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (285)
T d1wdya_          68 RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE------CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQ  141 (285)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC------BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHH
T ss_pred             cccccchhhHHHhhcCCccccchhhhhcccccc------cccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhh
Confidence            677889999999999999999999998755432      67889999999999999999999998765532         


Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhc----CCHHHHHHHHhcCCCCCccc
Q 045083          232 YSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRL----RSVDVAKILIEADPHVPYSA  307 (556)
Q Consensus       232 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~----g~~~~v~~Ll~~~~~~~~~~  307 (556)
                      ...+..|.||||+|+.+|+.+++++|+++...     .++..+..|.++.+.+...    +..+++++|+++|++++ .+
T Consensus       142 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n-~~  215 (285)
T d1wdya_         142 ERLRKGGATALMDAAEKGHVEVLKILLDEMGA-----DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN-VR  215 (285)
T ss_dssp             HHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCC-----CTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSS-CC
T ss_pred             hhhcccCchHHHHHHHcCCHHHHHHHHhccCC-----CcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCC-cc
Confidence            12356799999999999999999999976432     2567788898888776544    34579999999999986 77


Q ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHhcCChhHHHHHHHhhCCCChh
Q 045083          308 NRNSETPLYMAAANGSVKIVAKILQK-CPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRGTFKPQ  373 (556)
Q Consensus       308 ~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~d~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~~~  373 (556)
                      |..|.||||+|+++|+.+++++|+++ |.+++.+|.+|+||||+|++.++.++++.++..+......
T Consensus       216 ~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~  282 (285)
T d1wdya_         216 GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG  282 (285)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCS
T ss_pred             CCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcc
Confidence            89999999999999999999999975 8899999999999999999999999999999887765543

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.4e-32  Score=249.55  Aligned_cols=224  Identities=20%  Similarity=0.214  Sum_probs=196.6

Q ss_pred             CcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHH
Q 045083          132 NTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEA  211 (556)
Q Consensus       132 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A  211 (556)
                      ++|||+||..|+.++++.|++.++......|.+|.||||+|+..|+.+++++|++++++...   .+..+..|.+|+|++
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~---~~~~~~~~~~~~~~~   77 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL---DDYPDDSGWTPFHIA   77 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCG---GGCCCTTSCCHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccc---ccccccccccccccc
Confidence            58999999999999999999987766668899999999999999999999999999865432   223678899999999


Q ss_pred             HhcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCH
Q 045083          212 VRLRRVDVVKILIKADPHV-PYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSV  290 (556)
Q Consensus       212 ~~~~~~~~v~~Ll~~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~  290 (556)
                      +..+..++++.++..+... ....+..+.++++.++..++.++++.|++.+..      .+.+|..|+||||+|+..|+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~------~~~~~~~g~t~l~~a~~~~~~  151 (229)
T d1ixva_          78 CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS------VRIKDKFNQIPLHRAASVGSL  151 (229)
T ss_dssp             HHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------SCCCCTTSCCHHHHHHHHTCH
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccc------ccccCCCCCCccchhhhcccc
Confidence            9999999999999877643 345678899999999999999999999998864      456788999999999999999


Q ss_pred             HHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHhcCChhHHHHHHHhh
Q 045083          291 DVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQK-CPSPAHEGPDGKTALHAAVYTYPTDILERVLIVR  367 (556)
Q Consensus       291 ~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~d~~g~t~L~~A~~~~~~~~~~~~~~~~  367 (556)
                      +++++|++.++...+.+|..|+||||+|+.+|+.+++++|+++ |++++.+|.+|+||||+|+.   .++++.++.++
T Consensus       152 ~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g  226 (229)
T d1ixva_         152 KLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNV  226 (229)
T ss_dssp             HHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHC
T ss_pred             cccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcC
Confidence            9999999998776678899999999999999999999999974 89999999999999999984   35666666543

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=4.3e-33  Score=263.45  Aligned_cols=262  Identities=21%  Similarity=0.228  Sum_probs=156.1

Q ss_pred             CeeEEeeeccccccccccccccccchHHHHHHHHhhCcccccccc-CCCChHHHHHHHhCcHHHHHHHHHHhccCCchhh
Q 045083           35 NTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQAN-AKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLE  113 (556)
Q Consensus        35 ~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~  113 (556)
                      .||||++++.+..+          ++.+.|    .+.+  ++..+ .+|+||||+||.+|+.++|++|+.+....  -+.
T Consensus         1 ~~p~~~~~~~~~~~----------~~~~~l----~~~~--~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~--~l~   62 (277)
T d2fo1e1           1 ESPIKLHTEAAGSY----------AITEPI----TRES--VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKE--CIA   62 (277)
T ss_dssp             CCCCHHHHHHHSSS----------CCCSCC----STTT--TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHH--HHH
T ss_pred             CChHHHHHHhCCCH----------HHHHHH----HhcC--CCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhH--HHH
Confidence            47888655544430          444444    2222  23333 46999999999999999999987653210  000


Q ss_pred             hhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhH
Q 045083          114 RGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAA  193 (556)
Q Consensus       114 ~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~  193 (556)
                      .|.+      ++.+|.+|+||||+|++.|+.+++++|+++|++++ ..+..|.|||+.|+..++.++++.+.....   .
T Consensus        63 ~Gad------vn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~---~  132 (277)
T d2fo1e1          63 AGAD------VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPT-IYNKSERSALHQAAANRDFGMMVYMLNSTK---L  132 (277)
T ss_dssp             TCCC------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHTTSHH---H
T ss_pred             cCCC------ccccCCCCCeeeccccccccccccccccccccccc-cccccccccccchhhhcchhhhhhhhhccc---c
Confidence            0000      56789999999999999999999999999999987 678899999999999999999998865432   1


Q ss_pred             HHHhhhcCCCCCcHhHHHHhcCCHH---HHHHHHhcCCCC-------CccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCh
Q 045083          194 RQMLEKTNEEQNTPLHEAVRLRRVD---VVKILIKADPHV-------PYSANRNSETPLYMAVANGSAEIVAEILQNCPE  263 (556)
Q Consensus       194 ~~~~~~~~~~g~t~L~~A~~~~~~~---~v~~Ll~~~~~~-------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~  263 (556)
                      ...++..+..+.++.+.+...+..+   .++.+.+.....       ....+..|+||||+++..++.+.++.++.....
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~  212 (277)
T d2fo1e1         133 KGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS  212 (277)
T ss_dssp             HHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCC
T ss_pred             cccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccc
Confidence            1223346677788888887766543   333333332221       112233444555555555554444443332221


Q ss_pred             hHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHH
Q 045083          264 SAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKI  330 (556)
Q Consensus       264 ~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  330 (556)
                           ..+.+|..|+||||+|++.|+.+++++|+++|++++ .+|..|+||||+|+++|+.+++++|
T Consensus       213 -----~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin-~~d~~G~T~L~~A~~~~~~~iv~lL  273 (277)
T d2fo1e1         213 -----NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE-AVDATDHTARQLAQANNHHNIVDIF  273 (277)
T ss_dssp             -----CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             -----cccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCC-CcCCCCCCHHHHHHHcCCHHHHHHH
Confidence                 123344444445555555455555555554444443 3444444555555555544444443

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.98  E-value=1.4e-32  Score=259.78  Aligned_cols=262  Identities=17%  Similarity=0.207  Sum_probs=208.5

Q ss_pred             HHHHHHHh-cCCchHHHHhhhhhcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHH----HhhCcccccc
Q 045083            3 RKLYEAAA-KGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQI----LDLCPSLLFQ   77 (556)
Q Consensus         3 ~~L~~A~~-~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~   77 (556)
                      ++|+.|++ .|+.++++.|.+++++.... .+|+||||+||..|+.           ++++.|+..    +-..+.+++.
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~~~n~~~~-~~g~T~Lh~A~~~g~~-----------~~v~~Ll~~~~~~~l~~Gadvn~   69 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRESVNIIDP-RHNRTVLHWIASNSSA-----------EKSEDLIVHEAKECIAAGADVNA   69 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTTTTTTCCC-SSCCCHHHHHHCTTCC-----------SCCTTHHHHHHHHHHHTCCCTTC
T ss_pred             ChHHHHHHhCCCHHHHHHHHhcCCCcCCC-CCCccHHHHHHHcCCH-----------HHHHHHHhcchhHHHHcCCCccc
Confidence            45664333 56666666666777775433 5699999999999999           999988653    1234667889


Q ss_pred             ccCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCC-
Q 045083           78 ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPH-  156 (556)
Q Consensus        78 ~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~-  156 (556)
                      +|.+|+||||+|+.+|+.++|++|+++|++                ++.+|.+|.|||++|+..++.++++.+...... 
T Consensus        70 ~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad----------------~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~  133 (277)
T d2fo1e1          70 MDCDENTPLMLAVLARRRRLVAYLMKAGAD----------------PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLK  133 (277)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----------------SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHH
T ss_pred             cCCCCCeeeccccccccccccccccccccc----------------cccccccccccccchhhhcchhhhhhhhhccccc
Confidence            999999999999999999999999999987                456789999999999999999999998875321 


Q ss_pred             -CcccccCCCCcHHHHHHHcCCHH---HHHHHHHhCCChh--HHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCC
Q 045083          157 -VSYSANRNSETLLYMAVANGSAE---IVAEILQNCPQSA--ARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHV  230 (556)
Q Consensus       157 -~~~~~~~~g~t~L~~A~~~g~~~---~v~~Ll~~~~~~~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~  230 (556)
                       .....+..+.++.+.+...+..+   .+..+.+......  .....+..+..|.||||.++..++.+++++++......
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~  213 (277)
T d2fo1e1         134 GDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN  213 (277)
T ss_dssp             HTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC
T ss_pred             ccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCcccccccccccccccccccccccc
Confidence             12245677889999998877544   4444444432111  01112235678999999999999999999888766666


Q ss_pred             CccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHh
Q 045083          231 PYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE  298 (556)
Q Consensus       231 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  298 (556)
                      .+.+|..|+||||+|+..|+.+++++|++++++      ++.+|..|+||||+|+++|+.+++++|++
T Consensus       214 ~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gad------in~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         214 KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS------VEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC------SSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            688999999999999999999999999999975      67889999999999999999999999986

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=5.1e-32  Score=258.01  Aligned_cols=236  Identities=20%  Similarity=0.166  Sum_probs=193.1

Q ss_pred             CCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCccc
Q 045083           81 KGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYS  160 (556)
Q Consensus        81 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~  160 (556)
                      ++.|||+.||..|+.++|++|+++|++                ++.+|.+|.||||+|+..|+.+++++|++++.+.. .
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gad----------------vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~-~  101 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGAD----------------INYANVDGLTALHQACIDDNVDMVKFLVENGANIN-Q  101 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCC----------------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT-C
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCC----------------CCccCCCCCcHHHHHHhcCCceeeeeecccccccc-c
Confidence            456999999999999999999999987                56789999999999999999999999999998876 6


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCC
Q 045083          161 ANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSET  240 (556)
Q Consensus       161 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t  240 (556)
                      .+..+.+||+.++..++.++++.|++++.....      .+..+.+++++|+..+..+.++.++.............+..
T Consensus       102 ~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~  175 (291)
T d1s70b_         102 PDNEGWIPLHAAASCGYLDIAEYLISQGAHVGA------VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEER  175 (291)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC------CCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhhcccccCccccc------ccccCccccccccccccchhccccccccccccccccccccc
Confidence            678899999999999999999999998865432      68899999999999999999999987543321111100000


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHH
Q 045083          241 PLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAA  320 (556)
Q Consensus       241 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  320 (556)
                      +       ........+.....      .....+..|.||||.|+..|+.++++.|++.|++++ .++..|+||||+|++
T Consensus       176 ~-------~~~~~~~~~~~~~~------~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din-~~~~~g~TpL~~A~~  241 (291)
T d1s70b_         176 I-------MLRDARQWLNSGHI------NDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN-IKDYDGWTPLHAAAH  241 (291)
T ss_dssp             H-------HHHHHHHHHHHTCC------CCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHH
T ss_pred             c-------ccccchhhhccccc------ccccccCCCCChhhHHHHcCChhhhcccccceeccc-ccccCCCCHHHHHHH
Confidence            0       01111122222221      123456789999999999999999999999999986 779999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHh
Q 045083          321 NGSVKIVAKILQKCPSPAHEGPDGKTALHAAVY  353 (556)
Q Consensus       321 ~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~  353 (556)
                      .|+.++|++|+++|++++.+|+.|+||||+|++
T Consensus       242 ~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         242 WGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            999999999999999999999999999999975

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.5e-30  Score=234.83  Aligned_cols=224  Identities=25%  Similarity=0.352  Sum_probs=133.6

Q ss_pred             CCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCccc
Q 045083           81 KGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYS  160 (556)
Q Consensus        81 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~  160 (556)
                      +|+||||+||..|+.++|+.|++...+...+            ++.+|.+|+||||+|+..|+.+++++|++++++.+ .
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~------------in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~-~   68 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE------------LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-A   68 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC------------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-C
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCC------------CCccCCCCCccceehhccccccccccccccccccc-c
Confidence            6899999999999999998888643221111            45678888999999999999999999998888776 6


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCC
Q 045083          161 ANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSET  240 (556)
Q Consensus       161 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t  240 (556)
                      .+..+.++++.|...++.++++.+..........  .+.......++|+.+.........+.|.....+.....+..+.+
T Consensus        69 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  146 (228)
T d1k1aa_          69 LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD--LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRS  146 (228)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCC
T ss_pred             cccccccccccccccccccchhhhhhcccccccc--ccccccccccccccccccccchhhhhhhccccccccccccchhh
Confidence            6777888888888888888888776654322110  11133444555555555555555555555554443444444455


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHH
Q 045083          241 PLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAA  320 (556)
Q Consensus       241 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  320 (556)
                      ||+.|+..+..++++.+++.+..      .+.+|..|.||||+|+++|+.+++++|+++|++++ .+|.+|+||||+|++
T Consensus       147 ~l~~a~~~~~~~~~~~~~~~~~~------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n-~~d~~G~TpL~~A~~  219 (228)
T d1k1aa_         147 PLIHAVENNSLSMVQLLLQHGAN------VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS-LKNCHNDTPLMVARS  219 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC------TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCTTTTCSS
T ss_pred             HHHHHHHhhhhhhhhhhhhhccc------cccccccCcchHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHh
Confidence            55555555555555554444431      23334444444444444444444444444444433 344444444444444


Q ss_pred             cCCHHH
Q 045083          321 NGSVKI  326 (556)
Q Consensus       321 ~~~~~~  326 (556)
                      +|+.++
T Consensus       220 ~~~~di  225 (228)
T d1k1aa_         220 RRVIDI  225 (228)
T ss_dssp             HHHHHH
T ss_pred             CCCccc
Confidence            444443

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=6.2e-31  Score=250.41  Aligned_cols=262  Identities=19%  Similarity=0.219  Sum_probs=205.5

Q ss_pred             chHHHHhhhhhccccc---------ccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCCCCh
Q 045083           14 IEPFREIARDELESIV---------TDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKGDS   84 (556)
Q Consensus        14 ~~~v~~Ll~~g~~~~~---------~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t   84 (556)
                      .|.++.+.....+.+.         .+.++.|+|+.||..|+.           +++++|++   . +.+++..|.+|.|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~-----------~~v~~Ll~---~-Gadvn~~d~~G~T   75 (291)
T d1s70b_          11 NEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDT-----------EEVLRLLE---R-GADINYANVDGLT   75 (291)
T ss_dssp             HHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCH-----------HHHHHHHH---H-CCCTTCBCTTCCB
T ss_pred             HHHHHHHHhCcccccCchhhccccccCCCCchHHHHHHHcCCH-----------HHHHHHHH---C-CCCCCccCCCCCc
Confidence            4566666555433321         123456899999999999           99999954   4 5668899999999


Q ss_pred             HHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCC
Q 045083           85 PLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRN  164 (556)
Q Consensus        85 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~  164 (556)
                      |||+|+.+|+.++|++|++++.+.                ...+..+.+||+.|+..++.++++.|++++.... ..+..
T Consensus        76 ~L~~A~~~g~~eiv~~Ll~~~~~~----------------~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~-~~~~~  138 (291)
T d1s70b_          76 ALHQACIDDNVDMVKFLVENGANI----------------NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG-AVNSE  138 (291)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT----------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTT
T ss_pred             HHHHHHhcCCceeeeeeccccccc----------------ccccccccccccccccccccchhhcccccCcccc-ccccc
Confidence            999999999999999999998763                4467889999999999999999999999998776 67889


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHH
Q 045083          165 SETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYM  244 (556)
Q Consensus       165 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~  244 (556)
                      +.+|+++|+..++.+.++.++.........     ....+..+.       .......+.... ......+.+|.||||.
T Consensus       139 ~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~-----~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~g~t~L~~  205 (291)
T d1s70b_         139 GDTPLDIAEEEAMEELLQNEVNRQGVDIEA-----ARKEEERIM-------LRDARQWLNSGH-INDVRHAKSGGTALHV  205 (291)
T ss_dssp             SCCHHHHCCSHHHHHHHHHHHHHHTCCHHH-----HHHHHHHHH-------HHHHHHHHHHTC-CCCCCCTTTCCCHHHH
T ss_pred             Cccccccccccccchhcccccccccccccc-----ccccccccc-------cccchhhhcccc-cccccccCCCCChhhH
Confidence            999999999999999999998764332211     000001111       112222333333 3346678899999999


Q ss_pred             HHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCH
Q 045083          245 AVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSV  324 (556)
Q Consensus       245 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~  324 (556)
                      |+..|+.++++.|++.+.+      ++.++..|+||||+|++.|+.++|++|+++|++++ .+|..|+||||+|++    
T Consensus       206 a~~~~~~~~~~~Ll~~g~d------in~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~-~~d~~G~TaL~~A~e----  274 (291)
T d1s70b_         206 AAAKGYTEVLKLLIQARYD------VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME-AVNKVGQTAFDVADE----  274 (291)
T ss_dssp             HHHHTCHHHHHHHHTTTCC------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCTTTSCCS----
T ss_pred             HHHcCChhhhcccccceec------ccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHH----
Confidence            9999999999999999874      56788999999999999999999999999999986 789999999999975    


Q ss_pred             HHHHHHH
Q 045083          325 KIVAKIL  331 (556)
Q Consensus       325 ~~v~~Ll  331 (556)
                      +++++|.
T Consensus       275 ~~~~~L~  281 (291)
T d1s70b_         275 DILGYLE  281 (291)
T ss_dssp             GGGHHHH
T ss_pred             HHHHHHH
Confidence            3555543

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.1e-30  Score=235.86  Aligned_cols=198  Identities=23%  Similarity=0.242  Sum_probs=137.7

Q ss_pred             CCChHHHHHHHhCcHHHHHH----HHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCC
Q 045083           81 KGDSPLHLAAKKGHTAIVEF----LIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPH  156 (556)
Q Consensus        81 ~g~tpLh~A~~~g~~~iv~~----Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  156 (556)
                      +|+||||+|+..|+.++++.    +...+..                ++.+|.+|+||||+|+..|+.+++++|++.|++
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~----------------in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d   64 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAF----------------LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD   64 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCC----------------CCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCC----------------cccCCCCCCcccccccccccccccccccccccc
Confidence            58999999999998655554    4444444                566788999999999999999999999999998


Q ss_pred             CcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCC
Q 045083          157 VSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANR  236 (556)
Q Consensus       157 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~  236 (556)
                      +. ..|..|.+||+.++..|+.++++.|++.+..............+|.||||.|+..++.+++++++..+.......+.
T Consensus        65 ~~-~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~  143 (221)
T d1iknd_          65 PE-LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPC  143 (221)
T ss_dssp             SC-CCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT
T ss_pred             cc-ccccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCccccccccc
Confidence            86 77888999999999999999999998876432221112224455667777777777777777776666665444555


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCC
Q 045083          237 NSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADP  301 (556)
Q Consensus       237 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~  301 (556)
                      +|.||||+|+..|+.+++++|++++.+      ++.+|.+|+||||+|++.++.+++++|++.+.
T Consensus       144 ~G~T~L~~A~~~g~~~~v~~Ll~~gad------~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~  202 (221)
T d1iknd_         144 NGRTALHLAVDLQNPDLVSLLLKCGAD------VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL  202 (221)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHTTTCC------SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSC
T ss_pred             CCCCccccccccccHHHHHHHHhcCCc------ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            666666666666666666666666553      34555666666666666666666666665543

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8e-29  Score=225.72  Aligned_cols=219  Identities=21%  Similarity=0.237  Sum_probs=191.6

Q ss_pred             cCCCcHhHHHHhcCCHHHHHHHHh----cCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCC
Q 045083          129 EEQNTPLHEAVRLRSVDVVKILIK----ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQ  204 (556)
Q Consensus       129 ~~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g  204 (556)
                      ++|+||||+|+..|+.++++.|++    .|.+++ ..|..|.||||+|+..|+.+++++|++++.....      ....+
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in-~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~------~~~~~   73 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMA------LDRHG   73 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC------CCTTS
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-ccCCCCCccceehhcccccccccccccccccccc------ccccc
Confidence            369999999999999999998885    677776 7789999999999999999999999999876533      67889


Q ss_pred             CcHhHHHHhcCCHHHHHHHHhcCCC---CCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchh
Q 045083          205 NTPLHEAVRLRRVDVVKILIKADPH---VPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPL  281 (556)
Q Consensus       205 ~t~L~~A~~~~~~~~v~~Ll~~~~~---~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L  281 (556)
                      .++++.|...++.++++.+......   ..+.......++|+.+.........+.+.....+.     ....+..|.+||
T Consensus        74 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~l  148 (228)
T d1k1aa_          74 QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI-----DAVDIKSGRSPL  148 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-----TCCCTTTCCCHH
T ss_pred             ccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhcccccc-----ccccccchhhHH
Confidence            9999999999999999988775432   23445667889999999999999999998876542     235567899999


Q ss_pred             HHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHH
Q 045083          282 HEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDIL  360 (556)
Q Consensus       282 h~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~  360 (556)
                      +.|+..+..++++.+++.+.... .+|..|.||||+|+.+|+.+++++|+++|++++.+|.+|+||||+|++.++.+++
T Consensus       149 ~~a~~~~~~~~~~~~~~~~~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~div  226 (228)
T d1k1aa_         149 IHAVENNSLSMVQLLLQHGANVN-AQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL  226 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTT-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred             HHHHHhhhhhhhhhhhhhccccc-cccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCcccc
Confidence            99999999999999999998876 7799999999999999999999999999999999999999999999988877665

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=5.5e-28  Score=217.79  Aligned_cols=206  Identities=24%  Similarity=0.290  Sum_probs=170.8

Q ss_pred             HHHHHHHHHHhccCCchhhhhhhHHHHHHHhh-hccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHH
Q 045083           95 TAIVEFLIVFANRQPIDLERGVESAARQILKM-TNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAV  173 (556)
Q Consensus        95 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~-~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~  173 (556)
                      .|+|++|+++|++                ++. .|.+|.||||+||..|+.+++++|++.+++++ ..+..+.++++.++
T Consensus         2 ~~~v~~Ll~~g~d----------------in~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n-~~~~~~~~~~~~~~   64 (209)
T d1ot8a_           2 AQVISDLLAQGAE----------------LNATMDKTGETSLHLAARFARADAAKRLLDAGADAN-SQDNTGRTPLHAAV   64 (209)
T ss_dssp             HHHHHHHHHHHHH----------------HHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHH
T ss_pred             HHHHHHHHHCCCC----------------cCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccc-cccccccccccccc
Confidence            5899999999987                554 58899999999999999999999999999987 77888999999999


Q ss_pred             HcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHH
Q 045083          174 ANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEI  253 (556)
Q Consensus       174 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~  253 (556)
                      ..++.+...............     ....+.++.+.+.........+.|...+.+. +..+..|.|||+.++..+..++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~~~~t~l~~~~~~~~~~~  138 (209)
T d1ot8a_          65 AADAMGVFQILLRNRATNLNA-----RMHDGTTPLILAARLAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEA  138 (209)
T ss_dssp             HTTCHHHHHHHHTCTTCCTTC-----CCTTCCCHHHHHHHTTCTTHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHH
T ss_pred             ccccccccccccccccccccc-----ccccccccccccccccchhhhhhhhhhcccc-cccCCCCCCcchhhcccCccee
Confidence            999988877776655443322     5667788888888888888888888887774 6678888888888888888888


Q ss_pred             HHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHH
Q 045083          254 VAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKI  330 (556)
Q Consensus       254 v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  330 (556)
                      ++.+++.+.+      ++..|..|.||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+++|+.++|++|
T Consensus       139 ~~~l~~~~~~------~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n-~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         139 VNILLMHHAN------RDAQDDKDETPLFLAAREGSYEASKALLDNFANRE-ITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHHTTCC------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeeecccccc------ccccccccccccchhccccHHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            8888888764      45677888888888888888888888888888875 6788888888888888888888863

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.7e-29  Score=228.51  Aligned_cols=164  Identities=22%  Similarity=0.227  Sum_probs=122.5

Q ss_pred             cCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCc
Q 045083          200 TNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNT  279 (556)
Q Consensus       200 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t  279 (556)
                      ++.+|+||||+|+..|+.+++++|++.+++. +..|.+|.||||+++..|+.++++.+++.+...............|.|
T Consensus        35 ~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t  113 (221)
T d1iknd_          35 QNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT  113 (221)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCC
T ss_pred             CCCCCCccccccccccccccccccccccccc-cccccccccccccccccccccccchhhhhcccccccccccccccccch
Confidence            4556666666666666666666666666653 556666777777777777777777666654322111122344566889


Q ss_pred             hhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhH
Q 045083          280 PLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDI  359 (556)
Q Consensus       280 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~  359 (556)
                      |||.|+..++.+++++|++.|+.++...+.+|.||||+|+++|+.+++++|+++|++++.+|.+|+||||+|++.++.++
T Consensus       114 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~  193 (221)
T d1iknd_         114 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRI  193 (221)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHH
T ss_pred             hhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHH
Confidence            99999999999999999999888876667789999999999999999999999999999999999999999998888888


Q ss_pred             HHHHH
Q 045083          360 LERVL  364 (556)
Q Consensus       360 ~~~~~  364 (556)
                      ++.+.
T Consensus       194 ~~~l~  198 (221)
T d1iknd_         194 QQQLG  198 (221)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77664

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=1.1e-27  Score=215.91  Aligned_cols=207  Identities=19%  Similarity=0.302  Sum_probs=188.4

Q ss_pred             HHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHH
Q 045083          144 VDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKIL  223 (556)
Q Consensus       144 ~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  223 (556)
                      .|+|++|+++|++++...|.+|.||||+||..|+.+++++|++.++...      ..+..+.++++.++..++.......
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n------~~~~~~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADAN------SQDNTGRTPLHAAVAADAMGVFQIL   75 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTT------CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccc------ccccccccccccccccccccccccc
Confidence            4899999999999886678999999999999999999999999987643      3788999999999999999988888


Q ss_pred             HhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCC
Q 045083          224 IKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHV  303 (556)
Q Consensus       224 l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~  303 (556)
                      ..............|.++.+.+.........+.|.+.+.+      ++.++..|+|||+.++.++..++++.+++.+.++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~------~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~  149 (209)
T d1ot8a_          76 LRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD------INAADNSGKTALHWAAAVNNTEAVNILLMHHANR  149 (209)
T ss_dssp             HTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCC------TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             ccccccccccccccccccccccccccchhhhhhhhhhccc------ccccCCCCCCcchhhcccCcceeeeeeccccccc
Confidence            8777766677778899999999999999999999988764      5678899999999999999999999999999987


Q ss_pred             CccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHHHH
Q 045083          304 PYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERV  363 (556)
Q Consensus       304 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~~  363 (556)
                      + ..|..|.||||+|+.+|+.+++++|+++|++++.+|..|+||||+|++.++.++++.|
T Consensus       150 ~-~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         150 D-AQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             T-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             c-ccccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            6 7799999999999999999999999999999999999999999999999999988754

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=4.1e-29  Score=242.43  Aligned_cols=240  Identities=14%  Similarity=0.113  Sum_probs=159.3

Q ss_pred             ccccccCCCChHHHHHHHhCcHHHHHH---HHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHH
Q 045083           74 LLFQANAKGDSPLHLAAKKGHTAIVEF---LIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKIL  150 (556)
Q Consensus        74 ~~~~~~~~g~tpLh~A~~~g~~~iv~~---Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~L  150 (556)
                      .++.++..|.||||+||++||.+++++   |++.++.                ++.+|.+|.||||+|+++|+.++|++|
T Consensus        82 ~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~----------------in~~~~~g~taL~~Aa~~G~~~~v~~L  145 (346)
T d2ajaa1          82 DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEI----------------VKVIQAENYQAFRLAAENGHLHVLNRL  145 (346)
T ss_dssp             HHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS----------------CC--CHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCc----------------ccccCCCCCCHHHHHHHCCCHHHHHHH
Confidence            345778899999999999999988776   6777766                566788999999999999999999999


Q ss_pred             HhcCCCCccc-ccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCC
Q 045083          151 IKADPHVSYS-ANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPH  229 (556)
Q Consensus       151 l~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~  229 (556)
                      ++.|++.+.. .+..|.||||+|+..|+.++|++|++.++.....   +..+.++.||++.|+.+|+.+++++|++.+++
T Consensus       146 l~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~---~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~  222 (346)
T d2ajaa1         146 CELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATA---MIQAENYYAFRWAAVGRGHHNVINFLLDCPVM  222 (346)
T ss_dssp             HHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHH---HHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH
T ss_pred             HHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCccccc---ccccCCCcchhhHHhhcCHHHHHHHHHhCCCC
Confidence            9999988633 2346899999999999999999999998654322   22445677888999999999999999988765


Q ss_pred             CCc------cCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHH---HHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcC
Q 045083          230 VPY------SANRNSETPLYMAVANGSAEIVAEILQNCPESAA---RQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEAD  300 (556)
Q Consensus       230 ~~~------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~---~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~  300 (556)
                      ...      .....+.++++.+...+..+....+.....+...   ..........+.++++.|+..|..+++++|++.+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~  302 (346)
T d2ajaa1         223 LAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIP  302 (346)
T ss_dssp             HHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTST
T ss_pred             cchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCc
Confidence            310      1112222344444333333332222221110000   0000000112345677777777788888887765


Q ss_pred             CCCC----ccccCCCCCHHHHHHHcCCHHHHHHHHh
Q 045083          301 PHVP----YSANRNSETPLYMAAANGSVKIVAKILQ  332 (556)
Q Consensus       301 ~~~~----~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  332 (556)
                      ....    ...+.+|+||||+|++.|+.++|++||.
T Consensus       303 ~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~  338 (346)
T d2ajaa1         303 GIKALAPTATIPGDANELLRLALRLGNQGACALLLS  338 (346)
T ss_dssp             TTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTT
T ss_pred             ChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhC
Confidence            4321    1223457777777777777777777664

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=1.2e-27  Score=231.96  Aligned_cols=272  Identities=12%  Similarity=0.055  Sum_probs=193.4

Q ss_pred             hHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHH---HHhcCCCCccc
Q 045083           84 SPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKI---LIKADPHVSYS  160 (556)
Q Consensus        84 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~---Ll~~~~~~~~~  160 (556)
                      ++++++...+..++.+.+...+.+......     .....+..++..|.||||+|+.+|+.+++++   |++.|++++ .
T Consensus        48 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in-~  121 (346)
T d2ajaa1          48 IHIFLPGTKNMEQVRQLLCLYYAHYNRNAK-----QLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVK-V  121 (346)
T ss_dssp             HHHCCCCSSHHHHHHHHHHHHHHHTTTTCT-----THHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--
T ss_pred             HHHHHHhhccHHHHHHHHHHcchhhccchh-----hhhhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCccc-c
Confidence            445555556667888888777655432111     1223367789999999999999999887765   788898887 6


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCC--ccCCCCC
Q 045083          161 ANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVP--YSANRNS  238 (556)
Q Consensus       161 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~--~~~~~~g  238 (556)
                      .+..|.||||+||++|+.++|++|++.+++.....    .+.+|.||||+|+..|+.+++++|++.++...  +..+.++
T Consensus       122 ~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~----~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~  197 (346)
T d2ajaa1         122 IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM----IQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENY  197 (346)
T ss_dssp             -CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHH----HSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccc----cccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCC
Confidence            78899999999999999999999999987754321    34578999999999999999999999987632  2334567


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHcCChhHHHHH-hhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCC-cccc-------C
Q 045083          239 ETPLYMAVANGSAEIVAEILQNCPESAARQM-LEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVP-YSAN-------R  309 (556)
Q Consensus       239 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-~~~~-------~  309 (556)
                      .+|++.|+.+|+.+++++|++.+++...... .......+.++++.+...+..+....+.....+.. ...+       .
T Consensus       198 ~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~  277 (346)
T d2ajaa1         198 YAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGF  277 (346)
T ss_dssp             HHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHH
T ss_pred             cchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccc
Confidence            7888999999999999999998764322100 01112233455666655555554444443332211 0111       1


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCC-----CCCCCCCCCcHHHHHHhcCChhHHHHHHH
Q 045083          310 NSETPLYMAAANGSVKIVAKILQKCPS-----PAHEGPDGKTALHAAVYTYPTDILERVLI  365 (556)
Q Consensus       310 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~-----~~~~d~~g~t~L~~A~~~~~~~~~~~~~~  365 (556)
                      .+.++++.|+..+..+++++|+..+..     .+..+.+|+||||+|++.|+.++++.++.
T Consensus       278 ~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~  338 (346)
T d2ajaa1         278 YMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS  338 (346)
T ss_dssp             HHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTT
T ss_pred             hhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhC
Confidence            234688899999999999999987654     45566789999999999999999988863

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.2e-25  Score=188.66  Aligned_cols=154  Identities=20%  Similarity=0.215  Sum_probs=98.4

Q ss_pred             hHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccccC
Q 045083           84 SPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANR  163 (556)
Q Consensus        84 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~  163 (556)
                      +|||+||..|+.++|++|+++|++                ++.+|.+|.||||+|+ .|+.+++++|+++++++. ..+.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d----------------~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~-~~~~   64 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVN----------------VNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPD-LKDR   64 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCC----------------TTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTT-CCCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC----------------cCccCCcccccccccc-cccccccccccccccccc-cccc
Confidence            677777777777777777777665                3456677777777664 567777777777776665 5556


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHH
Q 045083          164 NSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLY  243 (556)
Q Consensus       164 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~  243 (556)
                      .+.+|++.++..++.+.++.+++.+....      ..+..|.+|+|.|+..++.+++++|+++++...+.+|.+|+||||
T Consensus        65 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~  138 (156)
T d1ihba_          65 TGFAVIHDAARAGFLDTLQTLLEFQADVN------IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACD  138 (156)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHH
T ss_pred             cCccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccCCCCCCHHH
Confidence            66666666666666666666666654422      245566666666666666666666666665444555666666666


Q ss_pred             HHHHcCCHHHHHHHHHcC
Q 045083          244 MAVANGSAEIVAEILQNC  261 (556)
Q Consensus       244 ~A~~~g~~~~v~~Ll~~~  261 (556)
                      +|+..|+.+++++|+++|
T Consensus       139 ~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         139 LARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHTTCHHHHHHHHHTC
T ss_pred             HHHHcCCHHHHHHHHhcC
Confidence            666666666666665543

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.9e-25  Score=188.24  Aligned_cols=154  Identities=23%  Similarity=0.262  Sum_probs=136.3

Q ss_pred             HHHHHHHhcCCchHHHHhhhhhcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCCC
Q 045083            3 RKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKG   82 (556)
Q Consensus         3 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g   82 (556)
                      .+||.||+.|++++|+.|+++|++++.+|.+|.||||+|+ .|+.           +++++|++   . +..++..+..|
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~-----------ei~~~Ll~---~-~a~~~~~~~~~   66 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNP-----------EIARRLLL---R-GANPDLKDRTG   66 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCH-----------HHHHHHHH---T-TCCTTCCCTTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccc-----------cccccccc---c-ccccccccccC
Confidence            5899999999999999999999999999999999999886 6888           99999954   3 45577888999


Q ss_pred             ChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCccccc
Q 045083           83 DSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSAN  162 (556)
Q Consensus        83 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~  162 (556)
                      .+|++.++..++.+.++.|++.+.+                ++..+..|.+|||+|+..++.+++++|+++++......|
T Consensus        67 ~~~l~~~~~~~~~~~~~~l~~~~~~----------------~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d  130 (156)
T d1ihba_          67 FAVIHDAARAGFLDTLQTLLEFQAD----------------VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRN  130 (156)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCC
T ss_pred             ccccccccccccccccccccccccc----------------ccccccccccccccccccccccccccccccccccccccC
Confidence            9999999999999999999988766                456788899999999999999999999999885555888


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhC
Q 045083          163 RNSETLLYMAVANGSAEIVAEILQNC  188 (556)
Q Consensus       163 ~~g~t~L~~A~~~g~~~~v~~Ll~~~  188 (556)
                      ..|.||||+|+..|+.+++++|+++|
T Consensus       131 ~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         131 HKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            89999999999999999999998865

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=8.7e-24  Score=179.73  Aligned_cols=148  Identities=20%  Similarity=0.235  Sum_probs=105.3

Q ss_pred             cHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHH
Q 045083          206 TPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAV  285 (556)
Q Consensus       206 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~  285 (556)
                      ||||.|++.|+.++++.|++++++.  ..|..|+||||+|+..++.++++.++.....      ....+..+.++++.++
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~--~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~   75 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPF--TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS------RDARTKVDRTPLHMAA   75 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCC--CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC------TTCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCc--ccccCCCcccccccccccccccccccccccc------cccccccccccccccc
Confidence            6777777777777777777777653  2567777777777777777777777666543      2334456667777777


Q ss_pred             hcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHHH
Q 045083          286 RLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILER  362 (556)
Q Consensus       286 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~  362 (556)
                      ...+.++++++.+++.+.. .+|..|+||||+|+..|+.+++++|++.|++++.+|.+|+||||+|+..++.++++.
T Consensus        76 ~~~~~~~~~~l~~~~~~~~-~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~l  151 (153)
T d1awcb_          76 SEGHANIVEVLLKHGADVN-AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI  151 (153)
T ss_dssp             HHTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ccccceeeecccccCCccc-cccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHh
Confidence            7777777777777777664 567777777777777777777777777777777777777777777777777776653

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.4e-24  Score=180.27  Aligned_cols=150  Identities=22%  Similarity=0.302  Sum_probs=107.8

Q ss_pred             cHhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHH
Q 045083          206 TPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAV  285 (556)
Q Consensus       206 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~  285 (556)
                      +.|+.|+..|+.++++.|++.+...++..|..|+||||+|+ .|+.+++++|++.+.+      ++..+..|.+|++.++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~------~~~~~~~~~~~l~~~~   76 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS------PNVQDTSGTSPVHDAA   76 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccc------cccccccccccccccc
Confidence            34777777777777777777654445677777777777765 3677777777777653      3555667777777777


Q ss_pred             hcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHHHHH
Q 045083          286 RLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVL  364 (556)
Q Consensus       286 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~~~  364 (556)
                      ..++.+++++++++|++++ .+|..|+||||+|++.|+.+++++|+ .|++++.+|.+|+||||+|+..++.++++.++
T Consensus        77 ~~~~~~~~~~~l~~~~~~n-~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  153 (156)
T d1bd8a_          77 RTGFLDTLKVLVEHGADVN-VPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQ  153 (156)
T ss_dssp             HTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHH
T ss_pred             ccccccccccccccccccc-cccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            7777777777777777765 56777777777777777777777644 66777777777777777777777777776654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.5e-24  Score=185.07  Aligned_cols=151  Identities=21%  Similarity=0.287  Sum_probs=125.5

Q ss_pred             HHHHHHHhcCCchHHHHhhhh-hcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCC
Q 045083            3 RKLYEAAAKGDIEPFREIARD-ELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAK   81 (556)
Q Consensus         3 ~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   81 (556)
                      .+|+.||..||++.|++|+++ +.+++..|..|+||||+|+. |+.           +++++|++   . +..++..+..
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~-----------~~v~~Ll~---~-~~~~~~~~~~   67 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GST-----------AIALELLK---Q-GASPNVQDTS   67 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCH-----------HHHHHHHH---T-TCCTTCCCTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-ccc-----------cccccccc---c-cccccccccc
Confidence            468999999999999999886 78888888999999998874 777           88888843   3 3446777888


Q ss_pred             CChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccc
Q 045083           82 GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSA  161 (556)
Q Consensus        82 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  161 (556)
                      |.+|+++|+..++.++++++++++.+                ++.+|..|.||||+|++.|+.+++++|+ .+.+++ ..
T Consensus        68 ~~~~l~~~~~~~~~~~~~~~l~~~~~----------------~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~-~~  129 (156)
T d1bd8a_          68 GTSPVHDAARTGFLDTLKVLVEHGAD----------------VNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLH-RR  129 (156)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCC----------------SCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTT-CC
T ss_pred             cccccccccccccccccccccccccc----------------cccccCCCCeeecccccccccccccccc-cccccc-cc
Confidence            89999999999999999999988776                4557888999999999999999998877 566665 67


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHh
Q 045083          162 NRNSETLLYMAVANGSAEIVAEILQN  187 (556)
Q Consensus       162 ~~~g~t~L~~A~~~g~~~~v~~Ll~~  187 (556)
                      |..|.||||+|+..|+.+++++|+++
T Consensus       130 d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         130 DARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            88889999999999999999888865

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=1.4e-23  Score=178.50  Aligned_cols=148  Identities=22%  Similarity=0.285  Sum_probs=81.6

Q ss_pred             cHhHHHHhcCCHHHHHHHHhcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHH
Q 045083          133 TPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAV  212 (556)
Q Consensus       133 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~  212 (556)
                      ||||.|++.|+.+++++|+++|++..  .|..|.||||+|+..++.++++.++...                        
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~--~~~~g~t~L~~a~~~~~~~~~~~~~~~~------------------------   57 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAG------------------------   57 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTT------------------------
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc--cccCCCcccccccccccccccccccccc------------------------
Confidence            56666666666666666666655443  3555555555555555555555555444                        


Q ss_pred             hcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHH
Q 045083          213 RLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDV  292 (556)
Q Consensus       213 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~  292 (556)
                                     ... ...+..+.++++.++...+.+.++++...+.+      .+.+|..|+||||+|+..|+.++
T Consensus        58 ---------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~g~T~L~~A~~~g~~~i  115 (153)
T d1awcb_          58 ---------------VSR-DARTKVDRTPLHMAASEGHANIVEVLLKHGAD------VNAKDMLKMTALHWATEHNHQEV  115 (153)
T ss_dssp             ---------------CCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC------TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             ---------------ccc-cccccccccccccccccccceeeecccccCCc------cccccccCchHHHhhhhcchhhe
Confidence                           332 23333444555555555555555555554432      23445556666666666666666


Q ss_pred             HHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHH
Q 045083          293 AKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAK  329 (556)
Q Consensus       293 v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~  329 (556)
                      +++|++.|++++ .+|.+|.||||+|+.+|+.|++++
T Consensus       116 v~~ll~~gad~~-~~d~~g~Tpl~~A~~~g~~eiv~l  151 (153)
T d1awcb_         116 VELLIKYGADVH-TQSKFCKTAFDISIDNGNEDLAEI  151 (153)
T ss_dssp             HHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             eeeccccccCCc-ccCCCCCCHHHHHHHcCCHHHHHh
Confidence            666666666554 456666666666666666666654

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=2.7e-24  Score=204.53  Aligned_cols=186  Identities=16%  Similarity=0.171  Sum_probs=98.8

Q ss_pred             cCCCChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCH-------HHHHHHH
Q 045083           79 NAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSV-------DVVKILI  151 (556)
Q Consensus        79 ~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~-------~~v~~Ll  151 (556)
                      |.+|+||||+||..|+.++|++|+++|++                ++.+|..|+||||.|+..++.       ++++++.
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad----------------~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~  167 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSN----------------RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY  167 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCC----------------TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCC----------------CCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh
Confidence            77788888888888888888888888776                456777888888888876541       2333332


Q ss_pred             hcCCCCcccccCCCCcHHHHHHHcCC----HHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHHhcC
Q 045083          152 KADPHVSYSANRNSETLLYMAVANGS----AEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKAD  227 (556)
Q Consensus       152 ~~~~~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  227 (556)
                      +   . ....|..|.||||.++..+.    .+.+++.                               ...++.++.+.+
T Consensus       168 ~---~-~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~l~~~~  212 (301)
T d1sw6a_         168 P---C-LILEDSMNRTILHHIIITSGMTGCSAAAKYY-------------------------------LDILMGWIVKKQ  212 (301)
T ss_dssp             G---G-GGEECTTCCCHHHHHHHHHTSTTCHHHHHHH-------------------------------HHHHHHHHHHGG
T ss_pred             h---h-hhhcccccCCHHHHHHHHhCccccHHHHHHH-------------------------------HHHHHHHHHhcC
Confidence            2   1 12345556666665553221    1111111                               112333444444


Q ss_pred             CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccc
Q 045083          228 PHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSA  307 (556)
Q Consensus       228 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  307 (556)
                      ..........+.++++.+........+..+.                                  ...++...   .+.+
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~---in~~  255 (301)
T d1sw6a_         213 NRPIQSGTNEKESKPNDKNGERKDSILENLD----------------------------------LKWIIANM---LNAQ  255 (301)
T ss_dssp             GCCEEEC----------------CHHHHHCS----------------------------------HHHHHHHT---TTCC
T ss_pred             CcchhcccccccchhHHHHhcchHHHHHHHh----------------------------------hHHHHhcC---ccCC
Confidence            3333333333334433333222211111110                                  11122222   1255


Q ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q 045083          308 NRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAV  352 (556)
Q Consensus       308 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~  352 (556)
                      |.+|+||||+|+++|+.++|++|+++|++++.+|+.|+||||+|+
T Consensus       256 D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         256 DSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            777888888888888888888888888888888888888888775

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=4e-23  Score=196.31  Aligned_cols=170  Identities=12%  Similarity=0.060  Sum_probs=83.2

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCH-------HHHHHHHhcCCCCCccC
Q 045083          162 NRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRV-------DVVKILIKADPHVPYSA  234 (556)
Q Consensus       162 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~-------~~v~~Ll~~~~~~~~~~  234 (556)
                      |..|.||||+||..|+.++|++|++++++...      +|..|+||||.|+..++.       ++++++..    .....
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~------~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~----~~~~~  173 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLY------GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP----CLILE  173 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTB------CCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG----GGGEE
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc------CCcccccHHHHhhhcccchhhhhHHHHHHHHhh----hhhhc
Confidence            55555666666666666666666655544322      455555666555554431       22333221    12344


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCH
Q 045083          235 NRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETP  314 (556)
Q Consensus       235 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~  314 (556)
                      |..|+||||.++..+..+.                           ...++++....+++++.+.+..........+.++
T Consensus       174 d~~g~t~lh~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  226 (301)
T d1sw6a_         174 DSMNRTILHHIIITSGMTG---------------------------CSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK  226 (301)
T ss_dssp             CTTCCCHHHHHHHHHTSTT---------------------------CHHHHHHHHHHHHHHHHHGGGCCEEEC-------
T ss_pred             ccccCCHHHHHHHHhCccc---------------------------cHHHHHHHHHHHHHHHHhcCCcchhcccccccch
Confidence            5556666666553321100                           0011111112345666666655544555566666


Q ss_pred             HHHHHHcCCHHHHHHHHh---cCCCCCCCCCCCCcHHHHHHhcCChhHHHHHHHhhC
Q 045083          315 LYMAAANGSVKIVAKILQ---KCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRG  368 (556)
Q Consensus       315 L~~A~~~~~~~~v~~Ll~---~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~~~~~~~  368 (556)
                      ++.+........+..+..   ....+|.+|.+|+||||+|++.++.++++.++..+.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GA  283 (301)
T d1sw6a_         227 PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA  283 (301)
T ss_dssp             ---------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTC
T ss_pred             hHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            666655544433332211   122378999999999999999999999999887543

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=8.7e-23  Score=164.27  Aligned_cols=107  Identities=26%  Similarity=0.395  Sum_probs=95.4

Q ss_pred             CHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHH
Q 045083          240 TPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAA  319 (556)
Q Consensus       240 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~  319 (556)
                      |||++|+++|+.+++++|++.+.+      ++.+|..|+||||+|+.+|+.+++++|+++|++++ .+|..|+||||+|+
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d------~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din-~~d~~g~tpLh~A~   76 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGED------VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-APDKHHITPLLSAV   76 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCC------CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTT-CCSSSCSCHHHHHH
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhc------cccccccccccccccccccccccccccccccceee-ecccccccchhhhh
Confidence            688999999999999999988864      56778889999999999999999999999999876 77889999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHh
Q 045083          320 ANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVY  353 (556)
Q Consensus       320 ~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~  353 (556)
                      .+|+.+++++|+++|++++.+|.+|+||||+|..
T Consensus        77 ~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          77 YEGHVSCVKLLLSKGADKTVKGPDGLTALEATDN  110 (118)
T ss_dssp             TTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTCSS
T ss_pred             hcCchhhhhhhhcccccceeeCCCCCCHHHHHhH
Confidence            9999999999999999999999999999998843

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=9.2e-22  Score=160.04  Aligned_cols=117  Identities=18%  Similarity=0.177  Sum_probs=63.9

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCC-CCHHHH
Q 045083          239 ETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNS-ETPLYM  317 (556)
Q Consensus       239 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-~t~L~~  317 (556)
                      .++||+|+.+|+.+++++|++++.+      ++.+|..|.||+|.|+ .|+.+++++|+++|++++ .++..| .||||+
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad------~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~L~~   75 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGAN------PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN-CADPATLTRPVHD   75 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCC------TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC-CCCTTTCCCHHHH
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCc------cccccccccccccccc-cccccccccccccccccc-ccccccccccccc
Confidence            3455555555555555555555542      3444555555555443 455555555555555554 333333 245666


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHhcCChhHHHHH
Q 045083          318 AAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERV  363 (556)
Q Consensus       318 A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~~  363 (556)
                      |+++|+.+++++|+++|++++.+|..|+||||+|++.++.++++.+
T Consensus        76 A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~L  121 (125)
T d1bi7b_          76 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL  121 (125)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             ccccccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHH
Confidence            6666666666665555555555566666666666555555555443

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=9e-22  Score=160.12  Aligned_cols=120  Identities=16%  Similarity=0.144  Sum_probs=78.7

Q ss_pred             CChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCcccc
Q 045083           82 GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSA  161 (556)
Q Consensus        82 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  161 (556)
                      +.++||+|+..|+.++|++|+++|.+                ++..|.+|.||||.|+ .|+.+++++|+++|++++...
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad----------------~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~   65 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGAN----------------PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCAD   65 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCC----------------TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCc----------------cccccccccccccccc-ccccccccccccccccccccc
Confidence            44677788888888888887777765                3456777777777554 577777777777777766333


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCChhHHHHhhhcCCCCCcHhHHHHhcCCHHHHHHHH
Q 045083          162 NRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILI  224 (556)
Q Consensus       162 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  224 (556)
                      ...+.+|||+|+..|+.+++++|++++.+..      .+|..|.||||+|++.|+.+++++|+
T Consensus        66 ~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~------~~d~~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          66 PATLTRPVHDAAREGFLDTLVVLHRAGARLD------VRDAWGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHHHHHTCCSS------CCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred             ccccccccccccccccccccccccccccccc------cccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            3333456777777777777776666664432      25566666666666666666666654

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=3.3e-23  Score=166.79  Aligned_cols=107  Identities=19%  Similarity=0.174  Sum_probs=98.9

Q ss_pred             CHHHHHHHhcCCchHHHHhhhhhcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCC
Q 045083            2 DRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAK   81 (556)
Q Consensus         2 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   81 (556)
                      |++|++|++.|+++++++|+++|++++..|.+|+||||+|+..|+.           ++++++++   . +.+++.+|..
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~-----------~~~~~ll~---~-g~din~~d~~   67 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQL-----------EILEFLLL---K-GADINAPDKH   67 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTT-----------THHHHHHH---S-SCTTTCCSSS
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcccccccccccccccccccccc-----------cccccccc---c-cceeeecccc
Confidence            6799999999999999999999999999999999999999999999           99999954   3 5667889999


Q ss_pred             CChHHHHHHHhCcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHH
Q 045083           82 GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAV  139 (556)
Q Consensus        82 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~  139 (556)
                      |+||||+|+.+|+.+++++|+++|++                ++.+|.+|.||||+|.
T Consensus        68 g~tpLh~A~~~~~~~~v~~Ll~~Gad----------------~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          68 HITPLLSAVYEGHVSCVKLLLSKGAD----------------KTVKGPDGLTALEATD  109 (118)
T ss_dssp             CSCHHHHHHTTTCCHHHHHHHTTCCC----------------SSSSSSSTCCCCCTCS
T ss_pred             cccchhhhhhcCchhhhhhhhccccc----------------ceeeCCCCCCHHHHHh
Confidence            99999999999999999999999987                5678999999999883

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1e-20  Score=154.88  Aligned_cols=118  Identities=23%  Similarity=0.208  Sum_probs=55.6

Q ss_pred             HhHHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHh
Q 045083          207 PLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVR  286 (556)
Q Consensus       207 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~  286 (556)
                      +|+.|+..|+.++++.|++++.++ +.+|.+|+||||+|+..|+.+++++|++.+.+      ++.+|.+|+||||+|+.
T Consensus         4 lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~------~~~~d~~g~tpLh~A~~   76 (130)
T d1ycsb1           4 LLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFGVN------VNAADSDGWTPLHCAAS   76 (130)
T ss_dssp             HHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC------TTCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCc-cccccccccccccccccccccccccccccccc------cccccccCcccccccch
Confidence            345555555555555555555442 44444555555555555555555555544432      23444445555555555


Q ss_pred             cCCHHHHHHHHhcCCCCCccccCCCCCHHHHH--HHcCCHHHHHHHH
Q 045083          287 LRSVDVAKILIEADPHVPYSANRNSETPLYMA--AANGSVKIVAKIL  331 (556)
Q Consensus       287 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll  331 (556)
                      +|+.+++++|+++|++++...+..|+|+++++  .++|+.+++++|+
T Consensus        77 ~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~  123 (130)
T d1ycsb1          77 CNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY  123 (130)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHH
T ss_pred             hhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHH
Confidence            55555555555555444322223344444333  2334444444443

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.3e-20  Score=152.75  Aligned_cols=119  Identities=21%  Similarity=0.189  Sum_probs=107.1

Q ss_pred             CHHHHHHHcCCHHHHHHHHHcCChhHHHHHhhhcCCCCCchhHHHHhcCCHHHHHHHHhcCCCCCccccCCCCCHHHHHH
Q 045083          240 TPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAA  319 (556)
Q Consensus       240 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~  319 (556)
                      ++|+.|+..|+.++++.|++++.+      ++.+|.+|+||||+|+..|+.+++++|++.|++.+ .+|.+|+||||+|+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d------~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~-~~d~~g~tpLh~A~   75 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDD------PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAA   75 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSS------CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC------ccccccccccccccccccccccccccccccccccc-cccccCcccccccc
Confidence            578999999999999999999874      57889999999999999999999999999999986 78999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCCC-CCCcHHHHHH--hcCChhHHHHHHH
Q 045083          320 ANGSVKIVAKILQKCPSPAHEGP-DGKTALHAAV--YTYPTDILERVLI  365 (556)
Q Consensus       320 ~~~~~~~v~~Ll~~~~~~~~~d~-~g~t~L~~A~--~~~~~~~~~~~~~  365 (556)
                      .+|+.+++++|+++|++++.++. +|+||++++.  ..|+.++++.++.
T Consensus        76 ~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          76 SCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             hhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            99999999999999999997764 5899988775  4577888887754

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=1.3e-19  Score=152.04  Aligned_cols=91  Identities=20%  Similarity=0.209  Sum_probs=52.5

Q ss_pred             CCCCCchhHHHHhc---CCHHHHHHHHhcCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q 045083          274 NEEQNTPLHEAVRL---RSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHA  350 (556)
Q Consensus       274 ~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~d~~g~t~L~~  350 (556)
                      +..|+||||+|++.   |..+++++|+++|++++ .+|..|+||||+|++.|+.+++++|+++|++++.+|.+|+||||+
T Consensus        42 ~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin-~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~  120 (154)
T d1dcqa1          42 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD-KQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI  120 (154)
T ss_dssp             SSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChh-hhhhhhccccccccccccccccccccccCccccccCCCCCCHHHH
Confidence            34455566655543   44556666666665553 455556666666666666666666666666666666666666666


Q ss_pred             HHhcCChhHHHHHHH
Q 045083          351 AVYTYPTDILERVLI  365 (556)
Q Consensus       351 A~~~~~~~~~~~~~~  365 (556)
                      |+..++.++++.++.
T Consensus       121 A~~~~~~~i~~~L~~  135 (154)
T d1dcqa1         121 AKRLKHEHCEELLTQ  135 (154)
T ss_dssp             HHHTTCHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHH
Confidence            666655555555544

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=1.8e-20  Score=157.42  Aligned_cols=126  Identities=22%  Similarity=0.254  Sum_probs=89.5

Q ss_pred             HHHHHHhcCCchHHHHhhhhhcccccccCCCCeeEEeeeccccccccccccccccchHHHHHHHHhhCccccccccCCCC
Q 045083            4 KLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQTEEGEISSESTEFVEQILDLCPSLLFQANAKGD   83 (556)
Q Consensus         4 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~   83 (556)
                      .|+.|++.+|++.+.+++.+|.+.+...                                          .....+..|+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~------------------------------------------~~~~~~~~g~   46 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKI------------------------------------------PLANGHEPDE   46 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBC------------------------------------------CCSSCSSTTC
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCC------------------------------------------CcccCCCCCC
Confidence            5789999999999999999988764320                                          0112244567


Q ss_pred             hHHHHHHHh---CcHHHHHHHHHHhccCCchhhhhhhHHHHHHHhhhccCCCcHhHHHHhcCCHHHHHHHHhcCCCCccc
Q 045083           84 SPLHLAAKK---GHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYS  160 (556)
Q Consensus        84 tpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~  160 (556)
                      ||||+|++.   |+.++|++|+++|++                ++.+|.+|+||||+|+..|+.+++++|+++|++++ .
T Consensus        47 t~Lh~A~~~~~~~~~~iv~~Ll~~gad----------------in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~-~  109 (154)
T d1dcqa1          47 TALHLAVRSVDRTSLHIVDFLVQNSGN----------------LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIE-I  109 (154)
T ss_dssp             BHHHHHHHHCCTTTHHHHHHHHHHCSC----------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-C
T ss_pred             chHHHHHHhcCCCCHHHHHHHHHcCCC----------------hhhhhhhhccccccccccccccccccccccCcccc-c
Confidence            777777764   456777777777665                45567777777777777777777777777777765 5


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 045083          161 ANRNSETLLYMAVANGSAEIVAEILQNC  188 (556)
Q Consensus       161 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~  188 (556)
                      .|..|.||||+|+..|+.+++++|++.+
T Consensus       110 ~d~~g~tpL~~A~~~~~~~i~~~L~~~~  137 (154)
T d1dcqa1         110 ANESGETPLDIAKRLKHEHCEELLTQAL  137 (154)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            6777777777777777777777777654