Citrus Sinensis ID: 045121

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MDWSCALCQVSTTSKRDLDEHLHGKKHKARKKDYLEMRRCATRKWTVVKMSILNGANWSSEDVHYLIFNNVKAAHYSSSLVKPRQQKNVGGEEDSENKNEELPKKKALNTITQKTTNGIPTGGTMRRKLPLRENFEFWCEVFQVGTHSAVVMEGHKRGKKHMARSNGSRKNNEAVPLTTPTTIVTPSEPTENVEDEDAVAQE
Secondary Structure (PSIPRED)
ccccccccccEEccHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccEEEcccHHHHHHHHHcHHHHHHHHcccccccccccccccccccccccccccccHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEcccHHHHHHHHccccccHcHHHHHHHHcccccccEEEccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccEEEEEEEEEEcccHHHHHHHHccHHHHHHHHHHccccccccccccccccccccHHHccccHHccccc
Coil and Loop (DISEMBL)
mdwscalcqvsttskrdldehlhgkkhkarKKDYLEMRRCATRKWTVVKMSILnganwssedVHYLIFNNVKaahyssslvkprqqknvggeedsenkneelpkkkALNTITqkttngiptggtmrrklplrenFEFWCEVFQVGTHSAVVMEghkrgkkhmarsngsrknneavplttpttivtpseptenvededavaqe
Flexible Loop (DISEMBL)
mdwscalcqvsttskrdldehlhgkkhkarkkdylemRRCATRKWTVVKMSILNGANWSSEDVHYLIFNNVKAAhyssslvkprqqknvggeedsenkneelpkkkalntitqkttngiptggtmrRKLPLRENFEFWCEVFQVGTHSAVVMEGHKRGKKhmarsngsrknneavplttpttivtpseptenvededavaqe
Low Complexity Region (SEG)
MDWSCALCQVSTTSKRDLDEHLHGKKHKARKKDYLEMRRCATRKWTVVKMSILNGANWSSEDVHYLIFNNVKAAHYSSSLVKPRQQKNVGGEEDSENKNEELPKKKALNTITQKTTNGIPTGGTMRRKLPLRENFEFWCEVFQVGTHSAVVMEGHKRGKKHMARSNGSRKNNEAVplttpttivtpseptENVEDEDAVAQE
Disordered region (IsUnstruct)
****CALCQ***********************DYLEMRRCATRKWTVVKMSILNGANWSSEDVHYLIFNNVKAAHY**************************************************RKLPLRENFEFWCEVFQVGTHSAVVM**************************************************
Disordered Region (DISOPRED)
MDWSCALCQVSTTSKRDLDEHLHG****************************************************************************************************************FWCEVFQVGTHSAVVMEGHKRGKKH*****************************************
Disordered Region (DISEMBL)
MDWSCALCQVST*******************KDYLEMRRCATRKWTVVKMSILNGANWSSEDVHYLIFNNVKAAHYSSSL*********************LPKKKALNTITQKTTNGIPTGGTMRRKLPLRENFEFWCEVFQVGTHSAVVME******************NEAVPLTTPTTIVTPS***************
Disordered Region (DISPRO)
*DWSCALCQVSTTSKRDLDEHLHGKKH******YL********KWTVV********************************************************************************LPLRENFEFWCEVFQVGTHSAVVMEGHKRGKKHMARSNG***********************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDWSCALCQVSTTSKRDLDEHLHGKKHKARKKDYLEMRRCATRKWTVVKMSILNGANWSSEDVHYLIFNNVKAAHYSSSLVKPRQQKNVGGEEDSENKNEELPKKKALNTITQKTTNGIPTGGTMRRKLPLRENFEFWCEVFQVGTHSAVVMEGHKRGKKHMARSNGSRKNNEAVPLTTPTTIVTPSEPTENVEDEDAVAQE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
224091795	291	predicted protein [Populus trichocarpa]	0.797	0.553	0.324	2e-17
356524790	386	PREDICTED: uncharacterized protein LOC10	0.633	0.331	0.289	2e-06
357123265	399	PREDICTED: uncharacterized protein LOC10	0.529	0.268	0.293	4e-05
326517535	877	predicted protein [Hordeum vulgare subsp	0.762	0.175	0.275	5e-05
226532668	390	uncharacterized protein LOC100272432 [Ze	0.529	0.274	0.275	8e-05
413954892	497	hypothetical protein ZEAMMB73_032543 [Ze	0.529	0.215	0.275	8e-05
242096554	601	hypothetical protein SORBIDRAFT_10g02579	0.297	0.099	0.413	0.0001
297825315	456	predicted protein [Arabidopsis lyrata su	0.480	0.212	0.309	0.0002
308080486	321	uncharacterized protein LOC100502196 [Ze	0.524	0.330	0.276	0.0002
125556299	487	hypothetical protein OsI_23931 [Oryza sa	0.143	0.059	0.724	0.0003

>gi|224091795|ref|XP_002309354.1| predicted protein [Populus trichocarpa] gi|222855330|gb|EEE92877.1| predicted protein [Populus trichocarpa]

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 99/188 (52%), Gaps = 27/188 (14%)

Query: 2   DWSCALCQVSTTSKRDLDEHLHGKKHKARK-------------KDYLEMRRCATRKWTVV 48
           +WSCALCQVS TS+R L+EHL G++HKA++             K  L      T K T+ 
Sbjct: 39  EWSCALCQVSATSERGLNEHLQGRRHKAKEAGLRAQKMARNPNKASLPKETTKTAKVTIP 98

Query: 49  KMSILNGANWSSEDVHYLIFNNVKAAHYSSSLVKPRQQKNVGGEEDSENKNEELPK-KKA 107
              +   A    E +        K+ ++S+  ++ ++++    +   E KN++L    K+
Sbjct: 99  TAGLEMEAKIEDESLQL-----NKSDNFSNKKIENKEERGNRNDVQLEQKNQQLEDLNKS 153

Query: 108 LNTITQKTTNGIPTGGTMRRKLPLRENFEFWCEVFQVGTHSAVVMEGHKRGKKHMARSNG 167
           +    Q T    P       ++ +++ F+FWCE+ Q+G +S +VME HK+GKKH+AR   
Sbjct: 154 MAEAVQ-TKERTP-------EIKMKKKFKFWCEMCQIGAYSEMVMEAHKKGKKHLARLQK 205

Query: 168 SRKNNEAV 175
           S +N EAV
Sbjct: 206 SSQNGEAV 213

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524790|ref|XP_003531011.1| PREDICTED: uncharacterized protein LOC100812073 [Glycine max]

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 41/169 (24%)

Query: 2   DWSCALCQVSTTSKRDLDEHLHGKKHKARKKDYLEMRRCATRKWTVVKMSILNGANWSSE 61
           +W+CALC V+T+S++ L +HLHG+KHKA  +      +    K   VK      ++ S +
Sbjct: 256 EWTCALCHVTTSSEKTLIDHLHGRKHKATCESLKAQNQPVPHK---VK------SDQSKD 306

Query: 62  DVHYLIFNNVKAAHYSSSLVKPRQQKNVGGEEDSENKNEELPKKKALNTITQKTTNGI-- 119
           D+                     +QKNV  + +S+ K+ E   K+A++   QK    +  
Sbjct: 307 DL---------------------KQKNVIYQINSKTKSGEKVGKEAMDHKVQKLQKKLYE 345

Query: 120 PTGGTMRRKLPLRENFEFWCEVFQVGTHSAVVMEGHKRGKKHMARSNGS 168
           P G +         N +F CEV  V     + +  HK GKKH+A+   S
Sbjct: 346 PAGTS---------NSKFLCEVCNVYCPCEIALASHKNGKKHLAKIKTS 385

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357123265|ref|XP_003563332.1| PREDICTED: uncharacterized protein LOC100840799 [Brachypodium distachyon]

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 53/160 (33%)

Query: 2   DWSCALCQVSTTSKRDLDEHLHGKKHKARKKDYLEMRRCATRKWTVVKMSILNGANWSSE 61
           DWSCALCQ++ T +  L+EHL G+KHKA+      + +C                  +S 
Sbjct: 194 DWSCALCQMTATCEAGLNEHLEGRKHKAK------LAKCG-----------------ASN 230

Query: 62  DVHYLIFNNVKAAHYSSSLVKPRQQKNVGGEEDSENKNEELPKKKALNTITQKTTNGIPT 121
            ++Y + NN++                  G +DS   ++E PKK             I  
Sbjct: 231 VINY-VKNNLQTTT---------------GNKDSTGPSDE-PKKIC-----------ILV 262

Query: 122 GGTMRRKLPLRENFEFWCEVFQVGTHSAVVMEGHKRGKKH 161
            G M     +++N   WC+  +V   S V M GH RGKKH
Sbjct: 263 DGAMHEV--VQKNNYLWCDRCKVRCDSNVTMAGHLRGKKH 300

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326517535|dbj|BAK03686.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 20/174 (11%)

Query: 2   DWSCALCQVSTTSKRDLDEHLHGKKHKARKKDYLEMRRCATRKWT-----VVKMSILNGA 56
           DWSC+LCQV   S+  L+EHL G+KHKA+      + +C   +        ++ +I N  
Sbjct: 192 DWSCSLCQVIAPSEAGLNEHLGGRKHKAK------LAQCGVSEVIKDDKNCLQTTIGNEN 245

Query: 57  NWSSEDVHYLIFNNVKAAHYSSSLVKPRQQKNVGGEEDSENKNEEL-PKKKALNTITQKT 115
           +    D    I   V  A   + L +    + +  E      ++ +   K +L+T T   
Sbjct: 246 STDPCDAPKKICMLVDGATCEAGLNEDLGGRKLKAELALCGASKAIKDDKDSLHTTTGNK 305

Query: 116 TNGIPTGGTMRRKLP--------LRENFEFWCEVFQVGTHSAVVMEGHKRGKKH 161
            +  P     +  L         +R+N   WC+  +V   S V+M GH RGKKH
Sbjct: 306 NSTDPCDAPKKIFLEVDGEMHEVVRKNNYLWCDRCRVRGDSNVIMAGHLRGKKH 359

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226532668|ref|NP_001140379.1| uncharacterized protein LOC100272432 [Zea mays] gi|194699238|gb|ACF83703.1| unknown [Zea mays] gi|413954891|gb|AFW87540.1| hypothetical protein ZEAMMB73_032543 [Zea mays]

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 62/160 (38%), Gaps = 53/160 (33%)

Query: 2   DWSCALCQVSTTSKRDLDEHLHGKKHKARKKDYLEMRRCATRKWTVVKMSILNGANWSSE 61
           DWSCALCQVS TS+  L++HL GKKHKA+                +V+   +   + +  
Sbjct: 102 DWSCALCQVSATSESGLNQHLQGKKHKAK----------------LVQCGAIKVMDTNKS 145

Query: 62  DVHYLIFNNVKAAHYSSSLVKPRQQKNVGGEEDSENKNEELPKKKALNTITQKTTNGIPT 121
            +H    NN                 N  G  D+  K   L   + ++ + QK+      
Sbjct: 146 GLHVTTGNN-----------------NGAGPSDAPKKIHILVDGE-MHQVVQKSK----- 182

Query: 122 GGTMRRKLPLRENFEFWCEVFQVGTHSAVVMEGHKRGKKH 161
                           WCE  +V   +A  M  H RGKKH
Sbjct: 183 --------------RVWCERCRVSCTNAGAMADHLRGKKH 208

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413954892|gb|AFW87541.1| hypothetical protein ZEAMMB73_032543 [Zea mays]

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 62/160 (38%), Gaps = 53/160 (33%)

Query: 2   DWSCALCQVSTTSKRDLDEHLHGKKHKARKKDYLEMRRCATRKWTVVKMSILNGANWSSE 61
           DWSCALCQVS TS+  L++HL GKKHKA+                +V+   +   + +  
Sbjct: 209 DWSCALCQVSATSESGLNQHLQGKKHKAK----------------LVQCGAIKVMDTNKS 252

Query: 62  DVHYLIFNNVKAAHYSSSLVKPRQQKNVGGEEDSENKNEELPKKKALNTITQKTTNGIPT 121
            +H    NN                 N  G  D+  K   L   + ++ + QK+      
Sbjct: 253 GLHVTTGNN-----------------NGAGPSDAPKKIHILVDGE-MHQVVQKSK----- 289

Query: 122 GGTMRRKLPLRENFEFWCEVFQVGTHSAVVMEGHKRGKKH 161
                           WCE  +V   +A  M  H RGKKH
Sbjct: 290 --------------RVWCERCRVSCTNAGAMADHLRGKKH 315

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242096554|ref|XP_002438767.1| hypothetical protein SORBIDRAFT_10g025790 [Sorghum bicolor] gi|241916990|gb|EER90134.1| hypothetical protein SORBIDRAFT_10g025790 [Sorghum bicolor]

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 15/75 (20%)

Query: 2   DWSCALCQVSTTSKRDLDEHLHGKKHKARKKDYLEMRRCATRKWTVVKMSIL-------N 54
           DWSCALCQVS TS+  L++H+ GKKHKA+      + +C   K    K S L       N
Sbjct: 219 DWSCALCQVSATSEAGLNQHIQGKKHKAK------LVQCGAIKVKDTKKSGLQVTTGNNN 272

Query: 55  GANWSS--EDVHYLI 67
           GA+ S   + +H L+
Sbjct: 273 GASPSDAPKKIHILV 287

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297825315|ref|XP_002880540.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297326379|gb|EFH56799.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 16/113 (14%)

Query: 99  NEELPKKKALNTITQKTTNGIPTGGTMRRKLP--------------LRENFEFWCEVFQV 144
           NE+L  K+  +  ++  T  + +G  +  KLP              +R N++FWCE+ +V
Sbjct: 244 NEDLQMKRQKSKESEAKTMSLESGEIVSSKLPCLGKLGCGKKVEIKVRSNYKFWCEICKV 303

Query: 145 GTHSAVVMEGHKRGKKHMARSNGSRKNNEAVPLT-TPTTIVTP-SEPTENVED 195
           GT+   VM  H+ GKKH A      +  EA   + +P ++  P SE T   ED
Sbjct: 304 GTYCQTVMRDHELGKKHKAAVTQQNEAPEAASTSLSPASVTAPQSEATTVRED 356

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|308080486|ref|NP_001183602.1| uncharacterized protein LOC100502196 [Zea mays] gi|238013370|gb|ACR37720.1| unknown [Zea mays] gi|413943510|gb|AFW76159.1| hypothetical protein ZEAMMB73_364823 [Zea mays]

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 61/159 (38%), Gaps = 53/159 (33%)

Query: 3   WSCALCQVSTTSKRDLDEHLHGKKHKARKKDYLEMRRCATRKWTVVKMSILNGANWSSED 62
           WSCA+CQVS TS+ +L+EHL GKKH+A+      + RC   K T       +G       
Sbjct: 199 WSCAICQVSATSEANLNEHLQGKKHRAK------LARCGATKATTDPPPNRSG------- 245

Query: 63  VHYLIFNNVKAAHYSSSLVKPRQQKNVGGEEDSENKNEELPKKKALNTITQKTTNGIPTG 122
                 +   A     S    R Q  V GE                + + Q+++      
Sbjct: 246 ------DGAVAVAAGPSDAPKRIQILVDGEA---------------HQVVQRSSC----- 279

Query: 123 GTMRRKLPLRENFEFWCEVFQVGTHSAVVMEGHKRGKKH 161
                          WCE  +VG  +A  M  H RGK+H
Sbjct: 280 --------------VWCERCRVGCTNAAAMVDHLRGKRH 304

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125556299|gb|EAZ01905.1| hypothetical protein OsI_23931 [Oryza sativa Indica Group]

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/29 (72%), Positives = 25/29 (86%)

Query: 2   DWSCALCQVSTTSKRDLDEHLHGKKHKAR 30
           DWSCALCQVS TS+  L+EHL GK+HKA+
Sbjct: 250 DWSCALCQVSATSEGALNEHLEGKRHKAK 278

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
TAIR|locus:2061486	455	AT2G24030 [Arabidopsis thalian	0.420	0.186	0.315	0.00032

TAIR|locus:2061486 AT2G24030 [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 0.00032, P = 0.00032
 Identities = 29/92 (31%), Positives = 47/92 (51%)

Query:    90 GGEEDSENKNEELPKK--KALNTITQKTTNG-IPTGGTM----RRKLPLRENFEFWCEVF 142
             G  ED + K  +  +   KA++  T +  +  +P  G +    + +  LR N +FWCE+ 
Sbjct:   240 GLNEDLQVKRPKAKESEAKAMSLETGEIVSSKVPCSGKLGSGKKAEGKLRTNQKFWCEIC 299

Query:   143 QVGTHSAVVMEGHKRGKKHMARSNGSRKNNEA 174
             +VGT+  +VM  H+ GKKH A      +  EA
Sbjct:   300 KVGTYCQIVMRDHELGKKHKAAVTQQNETPEA 331

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	202
pfam12874	25	pfam12874, zf-met, Zinc-finger of C2H2 type	7e-06

>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type

 Score = 41.0 bits (97), Expect = 7e-06
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 3  WSCALCQVSTTSKRDLDEHLHGKKH 27
          + C LC V+ TS+  L  HL GKKH
Sbjct: 1  FYCELCNVTFTSESQLKSHLRGKKH 25

This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding. Length = 25

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	98.66
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	98.61
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	98.56
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	98.41
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	98.27
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	98.08
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	97.47
KOG4727	193	consensus U1-like Zn-finger protein [General funct	97.44
KOG3408	129	consensus U1-like Zn-finger-containing protein, pr	96.68
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	96.66
KOG4727	193	consensus U1-like Zn-finger protein [General funct	96.1
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	95.66
PF14968	336	CCDC84: Coiled coil protein 84	95.33
KOG3792	816	consensus Transcription factor NFAT, subunit NF90	95.18
KOG3032	264	consensus Uncharacterized conserved protein [Funct	95.05
PLN02748	468	tRNA dimethylallyltransferase	95.04
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	95.02
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	94.96
smart00586	49	ZnF_DBF Zinc finger in DBF-like proteins.	94.91
PF07535	49	zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc	94.75
KOG0227	222	consensus Splicing factor 3a, subunit 2 [RNA proce	94.63
KOG3454	165	consensus U1 snRNP-specific protein C [RNA process	94.55
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	94.19
smart00586	49	ZnF_DBF Zinc finger in DBF-like proteins.	94.08
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	94.06
KOG4722	672	consensus Zn-finger protein [General function pred	93.84
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	93.84
COG5112	126	UFD2 U1-like Zn-finger-containing protein [General	93.4
PF07535	49	zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc	93.35
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	93.28
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	93.11
KOG0227	222	consensus Splicing factor 3a, subunit 2 [RNA proce	93.01
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	92.93
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	92.92
COG5246	222	PRP11 Splicing factor 3a, subunit 2 [RNA processin	92.72
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	92.71
COG5188	470	PRP9 Splicing factor 3a, subunit 3 [RNA processing	91.8
COG5246	222	PRP11 Splicing factor 3a, subunit 2 [RNA processin	91.66
KOG3032	264	consensus Uncharacterized conserved protein [Funct	90.77
smart00355	26	ZnF_C2H2 zinc finger.	90.76
KOG1146	1406	consensus Homeobox protein [General function predi	90.33
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	90.18
KOG3408	129	consensus U1-like Zn-finger-containing protein, pr	89.72
KOG3454	165	consensus U1 snRNP-specific protein C [RNA process	89.62
KOG3792	816	consensus Transcription factor NFAT, subunit NF90	89.4
smart00355	26	ZnF_C2H2 zinc finger.	88.73
KOG0150	336	consensus Spliceosomal protein FBP21 [RNA processi	86.76
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	85.68
KOG4722	672	consensus Zn-finger protein [General function pred	85.6
KOG2837	309	consensus Protein containing a U1-type Zn-finger a	84.93
PF04988	165	AKAP95: A-kinase anchoring protein 95 (AKAP95); In	83.65
COG5136	188	U1 snRNP-specific protein C [RNA processing and mo	83.29
COG5112	126	UFD2 U1-like Zn-finger-containing protein [General	81.9
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	81.41
PF04988	165	AKAP95: A-kinase anchoring protein 95 (AKAP95); In	80.59

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=98.66  E-value=1.2e-08  Score=58.87  Aligned_cols=25  Identities=32%  Similarity=0.630  Sum_probs=24.5

Q ss_pred             eecccccccCCCHHHHHhhhcchhH
Q 045121          137 FWCEVFQVGTHSAVVMEGHKRGKKH  161 (202)
Q Consensus       137 ~~Ce~C~v~~~se~~~~~Hl~GkKH  161 (202)
                      |+|++|++.|+++..|.+|++|++|
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            7999999999999999999999999

>smart00451 ZnF_U1 U1-like zinc finger

Probab=98.61  E-value=3.3e-08  Score=60.97  Aligned_cols=32  Identities=28%  Similarity=0.580  Sum_probs=30.3

Q ss_pred             ceecccccccCCCHHHHHhhhcchhHHHHhhh
Q 045121          136 EFWCEVFQVGTHSAVVMEGHKRGKKHMARSNG  167 (202)
Q Consensus       136 ~~~Ce~C~v~~~se~~~~~Hl~GkKH~~k~~~  167 (202)
                      .|||++|++.|++...+..|++|++|..+++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~   34 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK   34 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence            48999999999999999999999999999875

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=98.56  E-value=3.1e-08  Score=57.14  Aligned_cols=25  Identities=40%  Similarity=0.809  Sum_probs=24.6

Q ss_pred             eeccccccccCCHHHHHHhhcCcch
Q 045121            3 WSCALCQVSTTSKRDLDEHLHGKKH   27 (202)
Q Consensus         3 w~C~lC~vt~tse~~l~~Hl~GkkH   27 (202)
                      |+|.||+++|+++..|..|++|++|
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            8999999999999999999999998

>smart00451 ZnF_U1 U1-like zinc finger

Probab=98.41  E-value=1.4e-07  Score=58.11  Aligned_cols=32  Identities=41%  Similarity=0.763  Sum_probs=30.0

Q ss_pred             ceeccccccccCCHHHHHHhhcCcchHHHHHH
Q 045121            2 DWSCALCQVSTTSKRDLDEHLHGKKHKARKKD   33 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~GkkHk~~~e~   33 (202)
                      .|+|.+|+++|+++..+.+|+.|++|+.+++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~   34 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK   34 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence            58999999999999999999999999999864

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=98.27  E-value=4.9e-07  Score=53.47  Aligned_cols=27  Identities=26%  Similarity=0.486  Sum_probs=25.2

Q ss_pred             ceecccccccCCCHHHHHhhhcchhHH
Q 045121          136 EFWCEVFQVGTHSAVVMEGHKRGKKHM  162 (202)
Q Consensus       136 ~~~Ce~C~v~~~se~~~~~Hl~GkKH~  162 (202)
                      .|+|.+|+..|.++..|..|++|++|+
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred             CCCcccCCCCcCCHHHHHHHHccCCCC
Confidence            389999999999999999999999995

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=98.08  E-value=1.5e-06  Score=51.31  Aligned_cols=27  Identities=33%  Similarity=0.703  Sum_probs=25.4

Q ss_pred             ceeccccccccCCHHHHHHhhcCcchH
Q 045121            2 DWSCALCQVSTTSKRDLDEHLHGKKHK   28 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~GkkHk   28 (202)
                      .|+|.+|+..|.++..|.+|+.|++||
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred             CCCcccCCCCcCCHHHHHHHHccCCCC
Confidence            489999999999999999999999997

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.47  E-value=0.0001  Score=47.55  Aligned_cols=32  Identities=22%  Similarity=0.437  Sum_probs=20.7

Q ss_pred             ceecccccccC--CCHHHHHhhhcchhHHHHhhh
Q 045121          136 EFWCEVFQVGT--HSAVVMEGHKRGKKHMARSNG  167 (202)
Q Consensus       136 ~~~Ce~C~v~~--~se~~~~~Hl~GkKH~~k~~~  167 (202)
                      .+||+.|++.+  ++...=..|.+|++|+.+++.
T Consensus         3 ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~   36 (38)
T PF06220_consen    3 RYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKR   36 (38)
T ss_dssp             S-B-TTT--B-S--SHHHHHHHT--THHHHHHHH
T ss_pred             CeecccccceecCCChHHHHHhhccHHHHHHHHH
Confidence            48999999999  555677999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]

Probab=97.44  E-value=8.5e-05  Score=62.65  Aligned_cols=35  Identities=20%  Similarity=0.402  Sum_probs=31.8

Q ss_pred             ccCcceecccccccCCCHHHHHhhhcchhHHHHhh
Q 045121          132 RENFEFWCEVFQVGTHSAVVMEGHKRGKKHMARSN  166 (202)
Q Consensus       132 ~~~~~~~Ce~C~v~~~se~~~~~Hl~GkKH~~k~~  166 (202)
                      -..+-|||.||+-.+-...+|..|+|||+|+.++-
T Consensus        71 sq~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlg  105 (193)
T KOG4727|consen   71 SQKGGYYCDVCDCVVKDSINFLDHINGKKHQRNLG  105 (193)
T ss_pred             cccCceeeeecceeehhhHHHHHHhccHHHHHHHh
Confidence            34578999999999999999999999999998875

>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]

Probab=96.68  E-value=0.0018  Score=51.87  Aligned_cols=39  Identities=21%  Similarity=0.201  Sum_probs=35.8

Q ss_pred             ccCcceecccccccCCCHHHHHhhhcchhHHHHhhhhhh
Q 045121          132 RENFEFWCEVFQVGTHSAVVMEGHKRGKKHMARSNGSRK  170 (202)
Q Consensus       132 ~~~~~~~Ce~C~v~~~se~~~~~Hl~GkKH~~k~~~~~~  170 (202)
                      .-...|||-.|.--|-++.+|..|++||.|.++|+++.+
T Consensus        53 PG~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~~   91 (129)
T KOG3408|consen   53 PGGGQFYCIECARYFIDAKALKTHFKTKVHKRRVKELRE   91 (129)
T ss_pred             CCCceeehhhhhhhhcchHHHHHHHhccHHHHHHHhccc
Confidence            345679999999999999999999999999999999975

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.66  E-value=0.0017  Score=41.84  Aligned_cols=32  Identities=31%  Similarity=0.440  Sum_probs=20.3

Q ss_pred             ceeccccccccC--CHHHHHHhhcCcchHHHHHH
Q 045121            2 DWSCALCQVSTT--SKRDLDEHLHGKKHKARKKD   33 (202)
Q Consensus         2 ~w~C~lC~vt~t--se~~l~~Hl~GkkHk~~~e~   33 (202)
                      .++|+.|++.++  +...-..|+.|.+|+.+++.
T Consensus         3 ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~   36 (38)
T PF06220_consen    3 RYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKR   36 (38)
T ss_dssp             S-B-TTT--B-S--SHHHHHHHT--THHHHHHHH
T ss_pred             CeecccccceecCCChHHHHHhhccHHHHHHHHH
Confidence            489999999994  44566999999999999874

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]

Probab=96.10  E-value=0.0034  Score=53.11  Aligned_cols=32  Identities=22%  Similarity=0.521  Sum_probs=30.1

Q ss_pred             eeccccccccCCHHHHHHhhcCcchHHHHHHH
Q 045121            3 WSCALCQVSTTSKRDLDEHLHGKKHKARKKDY   34 (202)
Q Consensus         3 w~C~lC~vt~tse~~l~~Hl~GkkHk~~~e~l   34 (202)
                      |+|.||.-++-.-..+.+|++||+|+.++..+
T Consensus        76 yyCdVCdcvvKDSinflDHiNgKkHqrnlgms  107 (193)
T KOG4727|consen   76 YYCDVCDCVVKDSINFLDHINGKKHQRNLGMS  107 (193)
T ss_pred             eeeeecceeehhhHHHHHHhccHHHHHHHhhh
Confidence            79999999999999999999999999998754

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=95.66  E-value=0.0047  Score=44.64  Aligned_cols=31  Identities=26%  Similarity=0.417  Sum_probs=26.2

Q ss_pred             ceecccccccCCCHHHHHhhhcchhHHHHhh
Q 045121          136 EFWCEVFQVGTHSAVVMEGHKRGKKHMARSN  166 (202)
Q Consensus       136 ~~~Ce~C~v~~~se~~~~~Hl~GkKH~~k~~  166 (202)
                      .|.|.+|+..+.+...|..|++.+.|.....
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~~   80 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSKHHKKRNS   80 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHTTTTC-S-
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCccCCCccc
Confidence            5899999999999999999999999977644

>PF14968 CCDC84: Coiled coil protein 84

Probab=95.33  E-value=0.0093  Score=54.97  Aligned_cols=43  Identities=16%  Similarity=0.226  Sum_probs=33.4

Q ss_pred             cCcceecccccccCCCH------HHHHhhhcchhHHHHhhhh-hhCCCCC
Q 045121          133 ENFEFWCEVFQVGTHSA------VVMEGHKRGKKHMARSNGS-RKNNEAV  175 (202)
Q Consensus       133 ~~~~~~Ce~C~v~~~se------~~~~~Hl~GkKH~~k~~~~-~~~~~~~  175 (202)
                      ....|||-+|+.-...-      ..+..||.+--|++++++. .+++-.+
T Consensus        55 ~~~~fWC~fC~~ev~~~~s~~~~~~ai~HLaS~eH~k~vk~F~w~~g~~~  104 (336)
T PF14968_consen   55 HRNRFWCVFCDCEVREHDSSFACGGAIEHLASPEHRKNVKKFWWKNGADM  104 (336)
T ss_pred             ccceeEeeCccchhhhccchhhhccHHhhcCCHHHHHHHHHHHHHcCCCc
Confidence            45679999999876544      4688999999999999998 4444444

>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]

Probab=95.18  E-value=0.0087  Score=59.72  Aligned_cols=45  Identities=20%  Similarity=0.141  Sum_probs=39.0

Q ss_pred             cCcceecccccccCCCHHHHHhhhcchhHHHHhhhhhhCCCCCCC
Q 045121          133 ENFEFWCEVFQVGTHSAVVMEGHKRGKKHMARSNGSRKNNEAVPL  177 (202)
Q Consensus       133 ~~~~~~Ce~C~v~~~se~~~~~Hl~GkKH~~k~~~~~~~~~~~~~  177 (202)
                      +.+.+.|++|-++|++-.-+..||+|-+|..-.+-+...|.+.+.
T Consensus       232 w~~el~cEksi~tcs~pd~~g~alRrv~ec~~skL~~k~G~gi~d  276 (816)
T KOG3792|consen  232 WPLELHCEKSIVTCSGPDAYGAALRRVKECKVSKLHKKLGKGIPD  276 (816)
T ss_pred             chHHHHHHHhhccccCccchHHHHHHHHHhhhhcccccCCCCCCC
Confidence            445679999999999999999999999999999888877776554

>KOG3032 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.05  E-value=0.028  Score=49.71  Aligned_cols=37  Identities=22%  Similarity=0.305  Sum_probs=33.5

Q ss_pred             ccCcceecccccccCCCHHHHHhhhcchhHHHHhhhhh
Q 045121          132 RENFEFWCEVFQVGTHSAVVMEGHKRGKKHMARSNGSR  169 (202)
Q Consensus       132 ~~~~~~~Ce~C~v~~~se~~~~~Hl~GkKH~~k~~~~~  169 (202)
                      ..+..+.|.||||-.- +.....|.+||+|..+|..+.
T Consensus        31 n~sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~lK   67 (264)
T KOG3032|consen   31 NESGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLK   67 (264)
T ss_pred             CCCCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHHH
Confidence            3456889999999999 999999999999999998887

>PLN02748 tRNA dimethylallyltransferase

Probab=95.04  E-value=0.017  Score=55.37  Aligned_cols=36  Identities=25%  Similarity=0.353  Sum_probs=32.5

Q ss_pred             cceecccccc-cCCCHHHHHhhhcchhHHHHhhhhhh
Q 045121          135 FEFWCEVFQV-GTHSAVVMEGHKRGKKHMARSNGSRK  170 (202)
Q Consensus       135 ~~~~Ce~C~v-~~~se~~~~~Hl~GkKH~~k~~~~~~  170 (202)
                      ..+.|++|+. .+..+..-+.|++||+|+++++....
T Consensus       417 ~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~k  453 (468)
T PLN02748        417 TQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLKQ  453 (468)
T ss_pred             ccccccCCCCcccCCHHHHHHHhcchHHHHHHhHHHh
Confidence            4567999998 89999999999999999999997764

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=95.02  E-value=0.017  Score=31.55  Aligned_cols=21  Identities=33%  Similarity=0.789  Sum_probs=17.7

Q ss_pred             eeccccccccCCHHHHHHhhc
Q 045121            3 WSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         3 w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      |.|.+|..++.+...|..|+.
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~   21 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMR   21 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHH
Confidence            789999999999999999974

...

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=94.96  E-value=0.017  Score=55.40  Aligned_cols=36  Identities=22%  Similarity=0.369  Sum_probs=33.5

Q ss_pred             ceecccccccCCCHHHHHhhhcchhHHHHhhhhhhC
Q 045121          136 EFWCEVFQVGTHSAVVMEGHKRGKKHMARSNGSRKN  171 (202)
Q Consensus       136 ~~~Ce~C~v~~~se~~~~~Hl~GkKH~~k~~~~~~~  171 (202)
                      .+||-+|+.+|-|+..|..|-+.|||..+|..+.+.
T Consensus       292 ~lyC~vCnKsFKseKq~kNHEnSKKHkenv~eLrqe  327 (508)
T KOG0717|consen  292 VLYCVVCNKSFKSEKQLKNHENSKKHKENVAELRQE  327 (508)
T ss_pred             ceEEeeccccccchHHHHhhHHHHHHHHHHHHHHHH
Confidence            389999999999999999999999999999988763

>smart00586 ZnF_DBF Zinc finger in DBF-like proteins

Probab=94.91  E-value=0.011  Score=40.30  Aligned_cols=28  Identities=21%  Similarity=0.227  Sum_probs=23.8

Q ss_pred             ceecccccccCCCHHHHHhhhcchhHHHHhh
Q 045121          136 EFWCEVFQVGTHSAVVMEGHKRGKKHMARSN  166 (202)
Q Consensus       136 ~~~Ce~C~v~~~se~~~~~Hl~GkKH~~k~~  166 (202)
                      .-|||.|.+.+.   +|..|+.+++|++=..
T Consensus         5 ~GYCE~Cr~kfd---~l~~Hi~s~~Hr~FA~   32 (49)
T smart00586        5 PGYCENCREKYD---DLETHLLSEKHRRFAE   32 (49)
T ss_pred             CcccccHhHHHh---hHHHHhccHHHHHHHc
Confidence            359999999986   7999999999986543

>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.75  E-value=0.02  Score=38.94  Aligned_cols=28  Identities=25%  Similarity=0.290  Sum_probs=24.2

Q ss_pred             cceecccccccCCCHHHHHhhhcchhHHHHh
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKRGKKHMARS  165 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~GkKH~~k~  165 (202)
                      ..-|||.|.+.+.   +|..|+.+.+|++=.
T Consensus         4 k~GYCE~C~~ky~---~l~~Hi~s~~Hr~FA   31 (49)
T PF07535_consen    4 KPGYCENCRVKYD---DLEEHIQSEKHRKFA   31 (49)
T ss_pred             CCccCccccchhh---hHHHHhCCHHHHHHH
Confidence            3469999999997   599999999998755

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding

>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=94.63  E-value=0.027  Score=48.61  Aligned_cols=36  Identities=22%  Similarity=0.423  Sum_probs=32.1

Q ss_pred             ceeccccccccCCHHHHHHhhcCcchHHHHHHHHHH
Q 045121            2 DWSCALCQVSTTSKRDLDEHLHGKKHKARKKDYLEM   37 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~GkkHk~~~e~l~~~   37 (202)
                      .|-|-||...-.+|..+..|++||||+.|++.-.++
T Consensus        53 ~yeCkLClT~H~ne~Syl~HtqGKKHq~Nlarraa~   88 (222)
T KOG0227|consen   53 KYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAK   88 (222)
T ss_pred             ceeehhhhhhhcchhhhhhhhccchhhHHHHHHHHH
Confidence            478999999999999999999999999999865543

>KOG3454 consensus U1 snRNP-specific protein C [RNA processing and modification]

Probab=94.55  E-value=0.021  Score=47.86  Aligned_cols=31  Identities=23%  Similarity=0.429  Sum_probs=26.8

Q ss_pred             ceeccccccc--CCCHHHHHhhhcchhHHHHhh
Q 045121          136 EFWCEVFQVG--THSAVVMEGHKRGKKHMARSN  166 (202)
Q Consensus       136 ~~~Ce~C~v~--~~se~~~~~Hl~GkKH~~k~~  166 (202)
                      .|||+.|++.  =.|.++=..|+.|+||+.+++
T Consensus         3 RYyCDYCdt~LthDslsvRK~H~~GrkH~~nvk   35 (165)
T KOG3454|consen    3 RYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVK   35 (165)
T ss_pred             cchhhhhhhhhhcccHHHHHhhhhhHHHHHHHH
Confidence            4899999954  457889999999999998886

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=94.19  E-value=0.031  Score=30.44  Aligned_cols=21  Identities=24%  Similarity=0.384  Sum_probs=17.6

Q ss_pred             eecccccccCCCHHHHHhhhc
Q 045121          137 FWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       137 ~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      |.|++|+..+.+...|..|+.
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~   21 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMR   21 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHH
Confidence            679999999999999999985

...

>smart00586 ZnF_DBF Zinc finger in DBF-like proteins

Probab=94.08  E-value=0.021  Score=38.97  Aligned_cols=27  Identities=30%  Similarity=0.493  Sum_probs=23.6

Q ss_pred             ceeccccccccCCHHHHHHhhcCcchHHHH
Q 045121            2 DWSCALCQVSTTSKRDLDEHLHGKKHKARK   31 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~GkkHk~~~   31 (202)
                      +.+|++|.+.+.   +|..|+.+++|+.=.
T Consensus         5 ~GYCE~Cr~kfd---~l~~Hi~s~~Hr~FA   31 (49)
T smart00586        5 PGYCENCREKYD---DLETHLLSEKHRRFA   31 (49)
T ss_pred             CcccccHhHHHh---hHHHHhccHHHHHHH
Confidence            458999999986   799999999999844

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=94.06  E-value=0.034  Score=53.37  Aligned_cols=34  Identities=29%  Similarity=0.536  Sum_probs=32.6

Q ss_pred             eeccccccccCCHHHHHHhhcCcchHHHHHHHHH
Q 045121            3 WSCALCQVSTTSKRDLDEHLHGKKHKARKKDYLE   36 (202)
Q Consensus         3 w~C~lC~vt~tse~~l~~Hl~GkkHk~~~e~l~~   36 (202)
                      ++|-+|.-+|-|+..|..|-..|+|+.+|+.|+.
T Consensus       293 lyC~vCnKsFKseKq~kNHEnSKKHkenv~eLrq  326 (508)
T KOG0717|consen  293 LYCVVCNKSFKSEKQLKNHENSKKHKENVAELRQ  326 (508)
T ss_pred             eEEeeccccccchHHHHhhHHHHHHHHHHHHHHH
Confidence            7999999999999999999999999999998875

>KOG4722 consensus Zn-finger protein [General function prediction only]

Probab=93.84  E-value=0.032  Score=53.37  Aligned_cols=33  Identities=27%  Similarity=0.301  Sum_probs=30.8

Q ss_pred             eecccccccCCCHHHHHhhhcchhHHHHhhhhh
Q 045121          137 FWCEVFQVGTHSAVVMEGHKRGKKHMARSNGSR  169 (202)
Q Consensus       137 ~~Ce~C~v~~~se~~~~~Hl~GkKH~~k~~~~~  169 (202)
                      --|++|||-..|++.|-+|..|+||+..|+.+.
T Consensus       494 kqcslcnvlissevylfshvkgrkhqqal~e~~  526 (672)
T KOG4722|consen  494 KQCSLCNVLISSEVYLFSHVKGRKHQQALNELL  526 (672)
T ss_pred             hccchhhhhhhhhhhhhhhhcchhHHHHHHHHh
Confidence            469999999999999999999999999998775

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.84  E-value=0.038  Score=30.63  Aligned_cols=21  Identities=33%  Similarity=0.806  Sum_probs=19.7

Q ss_pred             eeccccccccCCHHHHHHhhc
Q 045121            3 WSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         3 w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      |.|.+|+..|++...|..|..
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~   21 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMR   21 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHh
Confidence            689999999999999999975

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]

Probab=93.40  E-value=0.042  Score=43.49  Aligned_cols=38  Identities=21%  Similarity=0.215  Sum_probs=35.2

Q ss_pred             CcceecccccccCCCHHHHHhhhcchhHHHHhhhhhhC
Q 045121          134 NFEFWCEVFQVGTHSAVVMEGHKRGKKHMARSNGSRKN  171 (202)
Q Consensus       134 ~~~~~Ce~C~v~~~se~~~~~Hl~GkKH~~k~~~~~~~  171 (202)
                      -..+||--|.--|-++..|..|+.|+-|.++++.+++.
T Consensus        53 lGqhYCieCaryf~t~~aL~~HkkgkvHkRR~KelRev   90 (126)
T COG5112          53 LGQHYCIECARYFITEKALMEHKKGKVHKRRAKELREV   90 (126)
T ss_pred             CceeeeehhHHHHHHHHHHHHHhccchhHHHHHHHhcC
Confidence            35789999999999999999999999999999999863

>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.35  E-value=0.041  Score=37.45  Aligned_cols=27  Identities=33%  Similarity=0.630  Sum_probs=23.5

Q ss_pred             ceeccccccccCCHHHHHHhhcCcchHHHH
Q 045121            2 DWSCALCQVSTTSKRDLDEHLHGKKHKARK   31 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~GkkHk~~~   31 (202)
                      .-+|+.|.+.+.   +|..|+.+++|+.=.
T Consensus         5 ~GYCE~C~~ky~---~l~~Hi~s~~Hr~FA   31 (49)
T PF07535_consen    5 PGYCENCRVKYD---DLEEHIQSEKHRKFA   31 (49)
T ss_pred             CccCccccchhh---hHHHHhCCHHHHHHH
Confidence            358999999997   599999999999754

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=93.28  E-value=0.067  Score=30.77  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      ++.|.+|+.+|.+...|..|++
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~   22 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKR   22 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHC
T ss_pred             CCCCCccCCccCChhHHHHHhH
Confidence            4789999999999999999994

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=93.11  E-value=0.046  Score=39.38  Aligned_cols=31  Identities=32%  Similarity=0.718  Sum_probs=26.2

Q ss_pred             ceeccccccccCCHHHHHHhhcCcchHHHHH
Q 045121            2 DWSCALCQVSTTSKRDLDEHLHGKKHKARKK   32 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~GkkHk~~~e   32 (202)
                      .|.|.+|...|.+...|..|+..+.|.....
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~~   80 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSKHHKKRNS   80 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHTTTTC-S-
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCccCCCccc
Confidence            4899999999999999999999999988654

>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=93.01  E-value=0.065  Score=46.29  Aligned_cols=38  Identities=16%  Similarity=0.173  Sum_probs=33.4

Q ss_pred             ccCcceecccccccCCCHHHHHhhhcchhHHHHhhhhh
Q 045121          132 RENFEFWCEVFQVGTHSAVVMEGHKRGKKHMARSNGSR  169 (202)
Q Consensus       132 ~~~~~~~Ce~C~v~~~se~~~~~Hl~GkKH~~k~~~~~  169 (202)
                      ..-..|-|.+|.-.-+++..+..|+.||||+.+|-...
T Consensus        49 Nh~G~yeCkLClT~H~ne~Syl~HtqGKKHq~Nlarra   86 (222)
T KOG0227|consen   49 NHLGKYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRA   86 (222)
T ss_pred             ccCcceeehhhhhhhcchhhhhhhhccchhhHHHHHHH
Confidence            33478999999999999999999999999999886654

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.93  E-value=0.065  Score=29.65  Aligned_cols=22  Identities=18%  Similarity=0.306  Sum_probs=20.0

Q ss_pred             eecccccccCCCHHHHHhhhcc
Q 045121          137 FWCEVFQVGTHSAVVMEGHKRG  158 (202)
Q Consensus       137 ~~Ce~C~v~~~se~~~~~Hl~G  158 (202)
                      |.|+.|+..|.+...|..|++-
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            5799999999999999999863

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=92.92  E-value=0.061  Score=50.35  Aligned_cols=37  Identities=22%  Similarity=0.355  Sum_probs=33.9

Q ss_pred             CcceecccccccCCCHHHHHhhhcchhHHHHhhhhhh
Q 045121          134 NFEFWCEVFQVGTHSAVVMEGHKRGKKHMARSNGSRK  170 (202)
Q Consensus       134 ~~~~~Ce~C~v~~~se~~~~~Hl~GkKH~~k~~~~~~  170 (202)
                      .+.++|.+|+-.+.|...+..||..|+|..++.....
T Consensus        66 ~~~~~c~~c~k~~~s~~a~~~hl~Sk~h~~~~~~~~r  102 (390)
T KOG2785|consen   66 ESVVYCEACNKSFASPKAHENHLKSKKHVENLSNHQR  102 (390)
T ss_pred             ccceehHHhhccccChhhHHHHHHHhhcchhhhhhhc
Confidence            4668999999999999999999999999999998764

>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=92.72  E-value=0.078  Score=45.56  Aligned_cols=33  Identities=27%  Similarity=0.546  Sum_probs=30.3

Q ss_pred             ceeccccccccCCHHHHHHhhcCcchHHHHHHH
Q 045121            2 DWSCALCQVSTTSKRDLDEHLHGKKHKARKKDY   34 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~GkkHk~~~e~l   34 (202)
                      .+.|-||..+--++..+..|+.||||+.++.+-
T Consensus        53 k~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~rr   85 (222)
T COG5246          53 KYVCLLCKTKHLTEMSYVKHREGKKHKENSSRR   85 (222)
T ss_pred             cEEeeeeccccccHHHHHHhhccchhhhhHHHH
Confidence            478999999999999999999999999998754

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=92.71  E-value=0.077  Score=30.51  Aligned_cols=22  Identities=27%  Similarity=0.364  Sum_probs=20.1

Q ss_pred             ceecccccccCCCHHHHHhhhc
Q 045121          136 EFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       136 ~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      .+.|.+|+..|.+...|..|++
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~   22 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKR   22 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHC
T ss_pred             CCCCCccCCccCChhHHHHHhH
Confidence            3789999999999999999984

>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]

Probab=91.80  E-value=0.079  Score=49.60  Aligned_cols=36  Identities=22%  Similarity=0.349  Sum_probs=32.0

Q ss_pred             cceecccccccCCCHHHHHhhhcchhHHHHhhhhhh
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKRGKKHMARSNGSRK  170 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~GkKH~~k~~~~~~  170 (202)
                      ..+||++|+--+....+|+.|+.||.|-+..+..++
T Consensus       237 ~~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~~~~~~~  272 (470)
T COG5188         237 PKVYCVKCGREFSRSKVFEYHLEGKRHCKEGQGKEE  272 (470)
T ss_pred             cceeeHhhhhHhhhhHHHHHHHhhhhhhhhhhhhhH
Confidence            468999999999999999999999999988876553

>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=91.66  E-value=0.17  Score=43.48  Aligned_cols=39  Identities=18%  Similarity=0.284  Sum_probs=34.3

Q ss_pred             cccCcceecccccccCCCHHHHHhhhcchhHHHHhhhhh
Q 045121          131 LRENFEFWCEVFQVGTHSAVVMEGHKRGKKHMARSNGSR  169 (202)
Q Consensus       131 k~~~~~~~Ce~C~v~~~se~~~~~Hl~GkKH~~k~~~~~  169 (202)
                      +.....|.|.+|+-.--++..+..|+.||||..++-..+
T Consensus        48 knh~Gk~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~rrs   86 (222)
T COG5246          48 KNHTGKYVCLLCKTKHLTEMSYVKHREGKKHKENSSRRS   86 (222)
T ss_pred             hcCCCcEEeeeeccccccHHHHHHhhccchhhhhHHHHH
Confidence            344579999999999999999999999999998887664

>KOG3032 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.77  E-value=0.2  Score=44.38  Aligned_cols=34  Identities=24%  Similarity=0.448  Sum_probs=31.8

Q ss_pred             ceeccccccccCCHHHHHHhhcCcchHHHHHHHHH
Q 045121            2 DWSCALCQVSTTSKRDLDEHLHGKKHKARKKDYLE   36 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~GkkHk~~~e~l~~   36 (202)
                      ...|.||.|..- +....-|..||+|+.+++.|+.
T Consensus        35 ql~C~vCn~piK-p~lW~vHvnsKkHre~id~lKs   68 (264)
T KOG3032|consen   35 QLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLKS   68 (264)
T ss_pred             CeeEEEecCccc-HHHHHHHhccHHHHHHHHHHHh
Confidence            468999999999 9999999999999999999994

>smart00355 ZnF_C2H2 zinc finger

Probab=90.76  E-value=0.15  Score=27.77  Aligned_cols=21  Identities=33%  Similarity=0.651  Sum_probs=19.5

Q ss_pred             eeccccccccCCHHHHHHhhc
Q 045121            3 WSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         3 w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +.|..|..+|.+...|..|..
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHH
Confidence            469999999999999999986

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=90.33  E-value=0.24  Score=52.67  Aligned_cols=35  Identities=29%  Similarity=0.537  Sum_probs=32.1

Q ss_pred             ceeccccccccCCHHHHHHhhcCcchHHHHHHHHH
Q 045121            2 DWSCALCQVSTTSKRDLDEHLHGKKHKARKKDYLE   36 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~GkkHk~~~e~l~~   36 (202)
                      ++-|.+|.+++|....|-.||+.-+|+.+++.+..
T Consensus       518 p~~C~~C~~stttng~LsihlqS~~h~~~lee~~~  552 (1406)
T KOG1146|consen  518 PYPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEE  552 (1406)
T ss_pred             cccceeeeeeeecchHHHHHHHHHhhHHHHHHHHh
Confidence            57899999999999999999999999999776665

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=90.18  E-value=0.18  Score=28.32  Aligned_cols=20  Identities=40%  Similarity=0.860  Sum_probs=16.2

Q ss_pred             eeccccccccCCHHHHHHhhc
Q 045121            3 WSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         3 w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +.|..|..+++ +..|..|+.
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~   20 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLK   20 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHH
Confidence            57999999999 999999975

>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]

Probab=89.72  E-value=0.2  Score=40.32  Aligned_cols=35  Identities=29%  Similarity=0.476  Sum_probs=32.8

Q ss_pred             ceeccccccccCCHHHHHHhhcCcchHHHHHHHHH
Q 045121            2 DWSCALCQVSTTSKRDLDEHLHGKKHKARKKDYLE   36 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~GkkHk~~~e~l~~   36 (202)
                      .++|=.|.--|-++..|+.|+.||.|+..+..|+.
T Consensus        57 qfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~~   91 (129)
T KOG3408|consen   57 QFYCIECARYFIDAKALKTHFKTKVHKRRVKELRE   91 (129)
T ss_pred             eeehhhhhhhhcchHHHHHHHhccHHHHHHHhccc
Confidence            57999999999999999999999999999988875

>KOG3454 consensus U1 snRNP-specific protein C [RNA processing and modification]

Probab=89.62  E-value=0.21  Score=41.95  Aligned_cols=32  Identities=31%  Similarity=0.552  Sum_probs=26.8

Q ss_pred             ceecccccc--ccCCHHHHHHhhcCcchHHHHHH
Q 045121            2 DWSCALCQV--STTSKRDLDEHLHGKKHKARKKD   33 (202)
Q Consensus         2 ~w~C~lC~v--t~tse~~l~~Hl~GkkHk~~~e~   33 (202)
                      .|+|+-|++  |=-|-..-+.|+.|++|+.++..
T Consensus         3 RYyCDYCdt~LthDslsvRK~H~~GrkH~~nvk~   36 (165)
T KOG3454|consen    3 RYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVKD   36 (165)
T ss_pred             cchhhhhhhhhhcccHHHHHhhhhhHHHHHHHHH
Confidence            489999994  44577889999999999999864

>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]

Probab=89.40  E-value=0.12  Score=51.85  Aligned_cols=47  Identities=21%  Similarity=0.396  Sum_probs=36.3

Q ss_pred             cCCCcc--cccCCcccCcceecccccccCCCHHHHHhhhcchhHHHHhh
Q 045121          120 PTGGTM--RRKLPLRENFEFWCEVFQVGTHSAVVMEGHKRGKKHMARSN  166 (202)
Q Consensus       120 ~~G~~~--e~~~~k~~~~~~~Ce~C~v~~~se~~~~~Hl~GkKH~~k~~  166 (202)
                      +.|+..  |.+-+..+...|.|.+|+-.|+..-.-..||+|+||.-.-+
T Consensus       341 pvgeE~v~Eekd~~gK~~~f~cKlcdckf~d~nak~mhl~grRhrLQYk  389 (816)
T KOG3792|consen  341 PVGEEYVEEEKDPEGKLLRFHCKLCDCKFNDPNAKEMHLKGRRHRLQYK  389 (816)
T ss_pred             CCcccccccccCcccchHhhhhhhhcCCCCCcchHHhhhhcccccceec
Confidence            444442  44444566689999999999999999999999999965444

>smart00355 ZnF_C2H2 zinc finger

Probab=88.73  E-value=0.31  Score=26.44  Aligned_cols=21  Identities=19%  Similarity=0.281  Sum_probs=19.3

Q ss_pred             eecccccccCCCHHHHHhhhc
Q 045121          137 FWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       137 ~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      +-|..|+..+.+...|..|+.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHH
Confidence            469999999999999999987

>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]

Probab=86.76  E-value=0.39  Score=44.12  Aligned_cols=34  Identities=18%  Similarity=0.339  Sum_probs=28.1

Q ss_pred             cceecccccccCC-CHHHHHhhhcchhHHHHhhhh
Q 045121          135 FEFWCEVFQVGTH-SAVVMEGHKRGKKHMARSNGS  168 (202)
Q Consensus       135 ~~~~Ce~C~v~~~-se~~~~~Hl~GkKH~~k~~~~  168 (202)
                      ...||++|+|.+. .....+.|-+|++|+.+|.+.
T Consensus         9 ~kkfCdyCKiWi~dN~~Sv~~He~GkrHke~V~Kr   43 (336)
T KOG0150|consen    9 PKKFCDYCKIWIKDNPASVRFHERGKRHKENVAKR   43 (336)
T ss_pred             cchhhhhhhhhhcCChHHHHhHhhhhHHHHHHHHH
Confidence            4569999999874 567889999999999887653

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.68  E-value=0.51  Score=32.78  Aligned_cols=21  Identities=29%  Similarity=0.683  Sum_probs=16.4

Q ss_pred             eeccccccccCCHHHHHHhhc
Q 045121            3 WSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         3 w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      -+|++|+.++.+...|..||.
T Consensus        25 atCP~C~a~~~~srnLrRHle   45 (54)
T PF09237_consen   25 ATCPICGAVIRQSRNLRRHLE   45 (54)
T ss_dssp             EE-TTT--EESSHHHHHHHHH
T ss_pred             CCCCcchhhccchhhHHHHHH
Confidence            489999999999999999984

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>KOG4722 consensus Zn-finger protein [General function prediction only]

Probab=85.60  E-value=0.46  Score=45.70  Aligned_cols=33  Identities=33%  Similarity=0.603  Sum_probs=29.1

Q ss_pred             eccccccccCCHHHHHHhhcCcchHHHHHHHHH
Q 045121            4 SCALCQVSTTSKRDLDEHLHGKKHKARKKDYLE   36 (202)
Q Consensus         4 ~C~lC~vt~tse~~l~~Hl~GkkHk~~~e~l~~   36 (202)
                      -|+||.|-.+|+.-|-+|..||||+-.+-.+-.
T Consensus       495 qcslcnvlissevylfshvkgrkhqqal~e~~~  527 (672)
T KOG4722|consen  495 QCSLCNVLISSEVYLFSHVKGRKHQQALNELLL  527 (672)
T ss_pred             ccchhhhhhhhhhhhhhhhcchhHHHHHHHHhc
Confidence            599999999999999999999999977665443

>KOG2837 consensus Protein containing a U1-type Zn-finger and implicated in RNA splicing or processing [RNA processing and modification]

Probab=84.93  E-value=0.19  Score=45.52  Aligned_cols=39  Identities=13%  Similarity=0.179  Sum_probs=35.3

Q ss_pred             CcceecccccccCCCHHHHHhhhcchhHHHHhhhhhhCC
Q 045121          134 NFEFWCEVFQVGTHSAVVMEGHKRGKKHMARSNGSRKNN  172 (202)
Q Consensus       134 ~~~~~Ce~C~v~~~se~~~~~Hl~GkKH~~k~~~~~~~~  172 (202)
                      .+.|||.+|+-+|.++--|.+|...--|++.+.....+.
T Consensus        23 KlRwyCqmCQkQcrDeNGFkCH~~SeSHqRql~~~~~Np   61 (309)
T KOG2837|consen   23 KLRWYCQMCQKQCRDENGFKCHTMSESHQRQLLLFALNP   61 (309)
T ss_pred             HHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHhCc
Confidence            367999999999999999999999999999999887643

>PF04988 AKAP95: A-kinase anchoring protein 95 (AKAP95); InterPro: IPR007071 A-kinase (or PKA)-anchoring protein AKAP95 is implicated in mitotic chromosome condensation by acting as a targeting molecule for the condensin complex

Probab=83.65  E-value=0.97  Score=38.00  Aligned_cols=138  Identities=16%  Similarity=0.263  Sum_probs=79.8

Q ss_pred             eeccccccccCCHHHHHHhhcCcchHHHHHHHHHHHhhhccccceeeeeeccCCCCCcccchhhhhcccccccccccccc
Q 045121            3 WSCALCQVSTTSKRDLDEHLHGKKHKARKKDYLEMRRCATRKWTVVKMSILNGANWSSEDVHYLIFNNVKAAHYSSSLVK   82 (202)
Q Consensus         3 w~C~lC~vt~tse~~l~~Hl~GkkHk~~~e~l~~~~~~~~~k~~~~~~~i~~~a~~s~e~~~~~~~~n~~~~~~sss~~k   82 (202)
                      ++|++|.+.+--+..+..||.++=|+..+.-+..  +.  +             +..-+.++.|..+.++...      .
T Consensus         1 F~Cs~CKfrtf~~~ei~~HleS~~H~E~~~~i~t--kl--~-------------k~~~dFLqEy~~nk~KKt~------~   57 (165)
T PF04988_consen    1 FTCSFCKFRTFEEKEIEKHLESKFHKETLKYIQT--KL--P-------------KKTMDFLQEYMVNKFKKTE------S   57 (165)
T ss_pred             CccceeeeecccHHHHHHHHccchHHHHHHHHHh--cC--C-------------hHHHHHHHHHHHhhHHHHH------H
Confidence            5899999999999999999999999998887733  11  1             1123344455554222111      0


Q ss_pred             ccc-ccCCCCccCCccccccccchhhhccccccccccccCCCcccccCCcccCcceecccccccCCC-HHHHHhhhcchh
Q 045121           83 PRQ-QKNVGGEEDSENKNEELPKKKALNTITQKTTNGIPTGGTMRRKLPLRENFEFWCEVFQVGTHS-AVVMEGHKRGKK  160 (202)
Q Consensus        83 ~~~-qkn~g~~e~~~~k~~~~~k~~~l~~~~k~~~~~~~~G~~~e~~~~k~~~~~~~Ce~C~v~~~s-e~~~~~Hl~GkK  160 (202)
                      +++ ..+..+         ..+      ++    ..+...|-.++.-+  ++-.-+.|.-|++-.+. -..++.||..--
T Consensus        58 r~~~~~~~~~---------~~~------~i----e~D~~~gig~ehfm--~KVEa~hCsACd~~IP~~~~~vQ~Hl~S~~  116 (165)
T PF04988_consen   58 RRQQLENSSE---------ASK------QI----EQDVMEGIGQEHFM--KKVEAAHCSACDVFIPMQHSSVQKHLKSQD  116 (165)
T ss_pred             HHHHHHHhhh---------ccc------cc----ccchhhhcCHHHHH--HHHHHhhhhHhhhhccCcHHHHHHHhccHH
Confidence            010 000000         000      00    00111111122222  23345699999998876 678899999999


Q ss_pred             HHHHhhhhhhCCCCCCCCCCCccc
Q 045121          161 HMARSNGSRKNNEAVPLTTPTTIV  184 (202)
Q Consensus       161 H~~k~~~~~~~~~~~~~~~p~tiv  184 (202)
                      |..+-+...+..+...+..+++|.
T Consensus       117 H~~Nrr~~~eq~Kr~sl~vA~Sil  140 (165)
T PF04988_consen  117 HNKNRRAMMEQSKRSSLSVARSIL  140 (165)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHh
Confidence            998888666555555555555544

The protein contains two zinc fingers which are thought to mediate the binding of AKAP95 to DNA [].; GO: 0003677 DNA binding, 0005634 nucleus

>COG5136 U1 snRNP-specific protein C [RNA processing and modification]

Probab=83.29  E-value=0.4  Score=40.48  Aligned_cols=31  Identities=23%  Similarity=0.270  Sum_probs=25.9

Q ss_pred             ceecccccccCC--CHHHHHhhhcchhHHHHhh
Q 045121          136 EFWCEVFQVGTH--SAVVMEGHKRGKKHMARSN  166 (202)
Q Consensus       136 ~~~Ce~C~v~~~--se~~~~~Hl~GkKH~~k~~  166 (202)
                      .|+|+.|++..+  +.++-.+|+-|++|..+.+
T Consensus         3 RY~CeyC~~~LthD~lsvRk~H~~G~~H~~~~~   35 (188)
T COG5136           3 RYFCEYCNKMLTHDRLSVRKMHCGGAKHGLMRK   35 (188)
T ss_pred             chHHHHHHHHHhccHHHHHHHhhhhHHHHHHHH
Confidence            479999999875  5778899999999986554

>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]

Probab=81.90  E-value=0.87  Score=36.13  Aligned_cols=35  Identities=34%  Similarity=0.507  Sum_probs=32.5

Q ss_pred             ceeccccccccCCHHHHHHhhcCcchHHHHHHHHH
Q 045121            2 DWSCALCQVSTTSKRDLDEHLHGKKHKARKKDYLE   36 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~GkkHk~~~e~l~~   36 (202)
                      ..+|--|---|-++..|..|+.|+-|+..+..|+.
T Consensus        55 qhYCieCaryf~t~~aL~~HkkgkvHkRR~KelRe   89 (126)
T COG5112          55 QHYCIECARYFITEKALMEHKKGKVHKRRAKELRE   89 (126)
T ss_pred             eeeeehhHHHHHHHHHHHHHhccchhHHHHHHHhc
Confidence            46899999999999999999999999999988887

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=81.41  E-value=1  Score=25.19  Aligned_cols=20  Identities=15%  Similarity=0.295  Sum_probs=16.1

Q ss_pred             eecccccccCCCHHHHHhhhc
Q 045121          137 FWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       137 ~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      |.|..|+-.++ +..|..|+.
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~   20 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLK   20 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHH
Confidence            57999999998 999999975

>PF04988 AKAP95: A-kinase anchoring protein 95 (AKAP95); InterPro: IPR007071 A-kinase (or PKA)-anchoring protein AKAP95 is implicated in mitotic chromosome condensation by acting as a targeting molecule for the condensin complex

Probab=80.59  E-value=1.2  Score=37.40  Aligned_cols=32  Identities=22%  Similarity=0.221  Sum_probs=29.5

Q ss_pred             eecccccccCCCHHHHHhhhcchhHHHHhhhh
Q 045121          137 FWCEVFQVGTHSAVVMEGHKRGKKHMARSNGS  168 (202)
Q Consensus       137 ~~Ce~C~v~~~se~~~~~Hl~GkKH~~k~~~~  168 (202)
                      |.|.+|..+.--+..|+.||.++-|+..++-+
T Consensus         1 F~Cs~CKfrtf~~~ei~~HleS~~H~E~~~~i   32 (165)
T PF04988_consen    1 FTCSFCKFRTFEEKEIEKHLESKFHKETLKYI   32 (165)
T ss_pred             CccceeeeecccHHHHHHHHccchHHHHHHHH
Confidence            67999999999999999999999999777766

The protein contains two zinc fingers which are thought to mediate the binding of AKAP95 to DNA [].; GO: 0003677 DNA binding, 0005634 nucleus

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	3e-04

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4 Length = 127

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 9/85 (10%)

Query: 2   DWSCALCQVSTTSKRDLDEHLHGKKHKARKKDYLEMRRCAT------RKWTVVKMSILNG 55
           D  C +C     S+     H   +KH  + + Y+ + +          K    ++S    
Sbjct: 32  DTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGED 91

Query: 56  ANWSSEDVHYLIFNNVKAA--HYSS 78
            +     V  + F++   A  HY  
Sbjct: 92  RSKCC-PVCNMTFSSPVVAESHYIG 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	99.63
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	98.17
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.65
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	97.25
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.14
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	96.04
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	95.16
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	95.11
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	94.49
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	92.33
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	92.23
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	92.17
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	92.02
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	91.95
1ard_A	29	Yeast transcription factor ADR1; transcription reg	91.9
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.54
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	91.47
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	91.26
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.21
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.04
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	91.02
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	90.99
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	90.63
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	90.48
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	90.47
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	89.81
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	90.24
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	90.2
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	89.96
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	89.82
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	89.77
1ard_A	29	Yeast transcription factor ADR1; transcription reg	89.74
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	89.74
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	89.64
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	89.61
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	89.61
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	89.59
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	89.44
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	89.38
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	89.37
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	89.31
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.93
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	88.91
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	88.89
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	88.88
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.87
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.83
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	88.8
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.8
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	88.79
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	88.79
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	88.78
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	88.74
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	88.73
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	88.72
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	88.71
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	88.69
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	88.61
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	88.6
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	88.59
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	88.57
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	88.55
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	88.26
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	88.53
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	88.5
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	88.49
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	88.46
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	88.39
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.39
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	88.37
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	88.11
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	88.36
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	88.32
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	88.31
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.31
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.25
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	88.23
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	88.22
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	88.21
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	88.21
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	88.14
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	88.14
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	88.13
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	88.13
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	88.12
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	88.06
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	88.06
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	88.03
1paa_A	30	Yeast transcription factor ADR1; transcription reg	88.03
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	88.02
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	88.02
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.99
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	87.97
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	87.97
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.91
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.89
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.89
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	87.88
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	87.85
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.84
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.82
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	87.81
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	87.75
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	87.74
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	87.74
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	87.72
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	87.66
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.65
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	87.6
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	87.49
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	87.46
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	87.36
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	87.34
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	87.32
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.32
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.28
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.26
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.25
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	87.24
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	87.21
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	87.18
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.16
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	87.11
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	87.11
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	87.1
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.09
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	87.01
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	86.97
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	86.94
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	86.84
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	86.79
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	86.77
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	86.73
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	86.72
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	86.72
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	86.7
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	86.7
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	86.67
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	86.65
4f9c_B	144	Protein DBF4 homolog A; Ser/Thr protein kinase, tr	86.62
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	86.6
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	86.57
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	86.57
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	86.56
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	86.51
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	86.47
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	86.44
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	86.43
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	86.37
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	86.33
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	86.29
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	86.26
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	86.14
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	86.14
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	86.11
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	86.04
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	86.0
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	86.0
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	85.95
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	85.93
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	85.9
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	85.81
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	85.72
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	85.63
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	85.55
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	85.4
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	85.36
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	85.36
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	85.31
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	85.27
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	85.25
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	85.16
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	85.15
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	85.09
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	84.93
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	84.88
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	84.81
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	84.78
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	84.72
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	84.67
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	84.62
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	84.57
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	84.88
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	84.48
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	84.47
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	84.37
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	84.35
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	84.31
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	84.19
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	84.15
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	84.09
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	84.09
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	84.5
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	84.02
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	83.99
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	83.95
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	83.91
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	83.82
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	83.79
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	83.77
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	83.71
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	83.71
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	83.69
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	83.67
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	83.66
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	83.61
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	83.61
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	83.52
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	83.48
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	83.46
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	83.39
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	83.2
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	83.17
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	83.15
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	83.11
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	83.11
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	83.08
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	83.08
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	83.08
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	83.0
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	83.0
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	82.95
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	82.81
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	82.81
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	82.77
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	82.74
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	82.66
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	82.65
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	82.64
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	82.62
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	82.43
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	82.37
1paa_A	30	Yeast transcription factor ADR1; transcription reg	82.35
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	82.26
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	82.24
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	82.22
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	82.19
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	82.18
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	82.16
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	82.14
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	82.13
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	82.12
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	82.11
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	82.11
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	82.09
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	82.09
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	82.06
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	82.05
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	82.02
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	82.01
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	81.96
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	81.95
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	81.88
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	81.84
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	81.83
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	81.83
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	81.73
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	81.64
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	81.62
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	81.61
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	81.52
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	81.52
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	81.52
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	81.49
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	81.48
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	81.45
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	81.45
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	81.41
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	81.39
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	81.38
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	81.36
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	81.3
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	81.28
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	81.23
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	81.21
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	81.12
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	81.12
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	80.94
4f9c_B	144	Protein DBF4 homolog A; Ser/Thr protein kinase, tr	80.94
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	80.86
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	80.83
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	80.82
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	80.77
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	80.75
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	80.74
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	80.71
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	80.68
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	80.55
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	80.44
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	80.42
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	80.33
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	80.18
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	80.13
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	80.02
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	80.01

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=99.63  E-value=5.1e-16  Score=121.61  Aligned_cols=95  Identities=21%  Similarity=0.299  Sum_probs=68.0

Q ss_pred             ceeccccccccCCHHHHHHhhcCcchHHHHHHHHHHHhhhccccceeeeeeccCCCCCcccchhhhhccccccccccccc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLHGKKHKARKKDYLEMRRCATRKWTVVKMSILNGANWSSEDVHYLIFNNVKAAHYSSSLV   81 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~GkkHk~~~e~l~~~~~~~~~k~~~~~~~i~~~a~~s~e~~~~~~~~n~~~~~~sss~~   81 (202)
                      +|+|.+|+|+|+|+..+..|+.|++|+.++..+.... . ..       ...+      .                    
T Consensus        32 ~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~-~-~~-------~~~~------~--------------------   76 (127)
T 1zu1_A           32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAIN-Q-GE-------DSVP------A--------------------   76 (127)
T ss_dssp             SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHT-T-CC-------CCCS------C--------------------
T ss_pred             CCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhccc-C-cc-------cCCC------C--------------------
Confidence            5899999999999999999999999999998666511 0 00       0000      0                    


Q ss_pred             ccccccCCCCccCCccccccccchhhhccccccccccccCCCcccccCCcccCcceecccccccCCCHHHHHhhhcchhH
Q 045121           82 KPRQQKNVGGEEDSENKNEELPKKKALNTITQKTTNGIPTGGTMRRKLPLRENFEFWCEVFQVGTHSAVVMEGHKRGKKH  161 (202)
Q Consensus        82 k~~~qkn~g~~e~~~~k~~~~~k~~~l~~~~k~~~~~~~~G~~~e~~~~k~~~~~~~Ce~C~v~~~se~~~~~Hl~GkKH  161 (202)
                           +.++.    .                         +  .+..  ......|||++|++.|+|+.+|.+|++||+|
T Consensus        77 -----~~~~~----~-------------------------~--~~~~--~~~~~~~~C~~C~~~f~s~~~~~~H~~gk~H  118 (127)
T 1zu1_A           77 -----KKFKA----A-------------------------P--AEIS--DGEDRSKCCPVCNMTFSSPVVAESHYIGKTH  118 (127)
T ss_dssp             -----CCCSC----C-------------------------S--SCCS--SCCCTTTEETTTTEECSSHHHHHHHHTSHHH
T ss_pred             -----CccCC----C-------------------------c--cccc--cCCCCCeEcCCCCCEeCCHHHHHHHHCCHHH
Confidence                 00000    0                         0  0000  1234568999999999999999999999999


Q ss_pred             HHHhhhhh
Q 045121          162 MARSNGSR  169 (202)
Q Consensus       162 ~~k~~~~~  169 (202)
                      ++++++++
T Consensus       119 ~~~~~~~~  126 (127)
T 1zu1_A          119 IKNLRLRE  126 (127)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99999874

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=98.17  E-value=1.2e-06  Score=68.08  Aligned_cols=35  Identities=17%  Similarity=0.157  Sum_probs=32.5

Q ss_pred             ceecccccccCCCHHHHHhhhcchhHHHHhhhhhh
Q 045121          136 EFWCEVFQVGTHSAVVMEGHKRGKKHMARSNGSRK  170 (202)
Q Consensus       136 ~~~Ce~C~v~~~se~~~~~Hl~GkKH~~k~~~~~~  170 (202)
                      .|+|.+|+|.|+|+.++..|++|++|.++|+....
T Consensus        32 ~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~   66 (127)
T 1zu1_A           32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMA   66 (127)
T ss_dssp             SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhc
Confidence            48999999999999999999999999999987664

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.65  E-value=4.7e-05  Score=59.75  Aligned_cols=37  Identities=16%  Similarity=0.043  Sum_probs=34.5

Q ss_pred             CcceecccccccCCCHHHHHhhhcchhHHHHhhhhhh
Q 045121          134 NFEFWCEVFQVGTHSAVVMEGHKRGKKHMARSNGSRK  170 (202)
Q Consensus       134 ~~~~~Ce~C~v~~~se~~~~~Hl~GkKH~~k~~~~~~  170 (202)
                      ...|+|.+|+..|.+...|..|+++|+|.++++.+.+
T Consensus        48 ekpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~~   84 (124)
T 1zr9_A           48 GGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   84 (124)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             CcceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhcc
Confidence            4579999999999999999999999999999999874

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=97.25  E-value=0.00014  Score=52.74  Aligned_cols=33  Identities=24%  Similarity=0.428  Sum_probs=28.7

Q ss_pred             ceecccccccC--CCHHHHHhhhcchhHHHHhhhh
Q 045121          136 EFWCEVFQVGT--HSAVVMEGHKRGKKHMARSNGS  168 (202)
Q Consensus       136 ~~~Ce~C~v~~--~se~~~~~Hl~GkKH~~k~~~~  168 (202)
                      .|||+.|++..  .|..+-..|++|+||+.+++..
T Consensus         3 kYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~y   37 (77)
T 3cw1_L            3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY   37 (77)
T ss_pred             CcccccCCceecCCCHHHHHHHHccHHHHHHHHHH
Confidence            58999999998  5678889999999999888754

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.14  E-value=0.0002  Score=56.19  Aligned_cols=35  Identities=26%  Similarity=0.381  Sum_probs=33.0

Q ss_pred             ceeccccccccCCHHHHHHhhcCcchHHHHHHHHH
Q 045121            2 DWSCALCQVSTTSKRDLDEHLHGKKHKARKKDYLE   36 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~GkkHk~~~e~l~~   36 (202)
                      +|+|.+|...|.++..|..|+++|+|+.++..|..
T Consensus        50 pfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~~   84 (124)
T 1zr9_A           50 LHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   84 (124)
T ss_dssp             CSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             ceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhcc
Confidence            68999999999999999999999999999988865

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=96.04  E-value=0.0033  Score=45.53  Aligned_cols=33  Identities=36%  Similarity=0.628  Sum_probs=28.0

Q ss_pred             ceeccccccccC--CHHHHHHhhcCcchHHHHHHH
Q 045121            2 DWSCALCQVSTT--SKRDLDEHLHGKKHKARKKDY   34 (202)
Q Consensus         2 ~w~C~lC~vt~t--se~~l~~Hl~GkkHk~~~e~l   34 (202)
                      .|+|..|++..+  |.....+|++|++|+.+++..
T Consensus         3 kYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~y   37 (77)
T 3cw1_L            3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY   37 (77)
T ss_pred             CcccccCCceecCCCHHHHHHHHccHHHHHHHHHH
Confidence            489999999984  466689999999999999853

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=95.16  E-value=0.0061  Score=41.47  Aligned_cols=34  Identities=15%  Similarity=0.225  Sum_probs=31.3

Q ss_pred             eecccccccCCCHHHHHhhhcchhHHHHhhhhhh
Q 045121          137 FWCEVFQVGTHSAVVMEGHKRGKKHMARSNGSRK  170 (202)
Q Consensus       137 ~~Ce~C~v~~~se~~~~~Hl~GkKH~~k~~~~~~  170 (202)
                      .-|++|+|.++....++.|+--+.|..+|+..-.
T Consensus        14 ~eC~lC~vkYs~r~slqDHIFs~qHI~~vk~~v~   47 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHIFSKQHISKVRETVG   47 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHTSHHHHHHHHHTTC
T ss_pred             ccccccCcccccccchhhhhccHHHHHHHHHHHH
Confidence            3799999999999999999999999999997654

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=95.11  E-value=0.01  Score=54.50  Aligned_cols=34  Identities=21%  Similarity=0.279  Sum_probs=30.8

Q ss_pred             CcceecccccccCCCHHHHHhhhcchhHHHHhhh
Q 045121          134 NFEFWCEVFQVGTHSAVVMEGHKRGKKHMARSNG  167 (202)
Q Consensus       134 ~~~~~Ce~C~v~~~se~~~~~Hl~GkKH~~k~~~  167 (202)
                      ...+||..|+-.|.++.++..||.||||.+++.+
T Consensus       290 ~~~l~C~~c~K~Fs~~~v~~~hL~GKkh~K~~~~  323 (402)
T 4dgw_A          290 AKGIYCPFCSRWFKTSSVFESHLVGKIHKKNESK  323 (402)
T ss_dssp             TTEECBTTTTBCBSSHHHHHTTSSSHHHHHHHHH
T ss_pred             CcCeeehhhhhhhccccccHHHhcccccchhHHH
Confidence            3578999999999999999999999999987755

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=94.49  E-value=0.016  Score=53.33  Aligned_cols=36  Identities=11%  Similarity=0.171  Sum_probs=32.1

Q ss_pred             cceecccccc------cCCCHHHHHhhhcchhHHHHhhhhhh
Q 045121          135 FEFWCEVFQV------GTHSAVVMEGHKRGKKHMARSNGSRK  170 (202)
Q Consensus       135 ~~~~Ce~C~v------~~~se~~~~~Hl~GkKH~~k~~~~~~  170 (202)
                      ..+.|++|+.      .+..+...+.|++||+|+++++....
T Consensus       359 ~~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~~k  400 (409)
T 3eph_A          359 THYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNTR  400 (409)
T ss_dssp             CEEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHHHH
T ss_pred             cceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHHHH
Confidence            4678999998      79999999999999999999987653

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=92.33  E-value=0.077  Score=28.03  Aligned_cols=22  Identities=23%  Similarity=0.644  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.+...|..|..
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYR   24 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHT
T ss_pred             CccCCCCCcccCCHHHHHHHHH
Confidence            5789999999999999999975

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=92.23  E-value=0.081  Score=27.59  Aligned_cols=22  Identities=32%  Similarity=0.677  Sum_probs=19.5

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|..+|.+...|..|..
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~   22 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQR   22 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGG
T ss_pred             CccCCCCCCcCCCHHHHHHHHH
Confidence            4789999999999999999974

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=92.17  E-value=0.066  Score=28.24  Aligned_cols=22  Identities=27%  Similarity=0.665  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|..
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvh_A            3 PFSCSLCPQRSRDFSAMTKHLR   24 (27)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CccCCCcChhhCCHHHHHHHHH
Confidence            6899999999999999999973

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=92.02  E-value=0.047  Score=37.07  Aligned_cols=31  Identities=23%  Similarity=0.651  Sum_probs=28.3

Q ss_pred             eccccccccCCHHHHHHhhcCcchHHHHHHH
Q 045121            4 SCALCQVSTTSKRDLDEHLHGKKHKARKKDY   34 (202)
Q Consensus         4 ~C~lC~vt~tse~~l~~Hl~GkkHk~~~e~l   34 (202)
                      -|++|.|.++....|++|+--+.|-++|..+
T Consensus        15 eC~lC~vkYs~r~slqDHIFs~qHI~~vk~~   45 (55)
T 2yrk_A           15 ECTLCGVKYSARLSIRDHIFSKQHISKVRET   45 (55)
T ss_dssp             CCTTTTCCCCSSSCHHHHHTSHHHHHHHHHT
T ss_pred             cccccCcccccccchhhhhccHHHHHHHHHH
Confidence            5999999999999999999999999988643

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=91.95  E-value=0.085  Score=28.03  Aligned_cols=22  Identities=23%  Similarity=0.685  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|..
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvg_A            3 PYRCPLCRAGCPSLASMQAHMR   24 (27)
T ss_dssp             TEEETTTTEEESCHHHHHHHHT
T ss_pred             CcCCCCCCcccCCHHHHHHHHH
Confidence            5889999999999999999974

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=91.90  E-value=0.076  Score=28.00  Aligned_cols=22  Identities=18%  Similarity=0.591  Sum_probs=20.1

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|..
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~   23 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYR   23 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            5789999999999999999974

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=91.54  E-value=0.082  Score=29.36  Aligned_cols=22  Identities=32%  Similarity=0.608  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|..
T Consensus         7 ~~~C~~C~k~f~~~~~L~~H~~   28 (35)
T 2elx_A            7 GYVCALCLKKFVSSIRLRSHIR   28 (35)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CeECCCCcchhCCHHHHHHHHH
Confidence            5899999999999999999974

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=91.47  E-value=0.099  Score=29.19  Aligned_cols=22  Identities=27%  Similarity=0.628  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus         7 ~~~C~~C~k~f~~~~~l~~H~~   28 (35)
T 1srk_A            7 PFVCRICLSAFTTKANCARHLK   28 (35)
T ss_dssp             CEECSSSCCEESSHHHHHHHHG
T ss_pred             CeeCCCCCcccCCHHHHHHHHH
Confidence            5899999999999999999974

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=91.26  E-value=0.096  Score=27.49  Aligned_cols=22  Identities=27%  Similarity=0.522  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|+....|..|..
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLR   23 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHH
Confidence            6899999999999999999973

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.21  E-value=0.095  Score=29.36  Aligned_cols=22  Identities=27%  Similarity=0.440  Sum_probs=20.1

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|..
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elr_A            9 THLCDMCGKKFKSKGTLKSHKL   30 (36)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CeecCcCCCCcCchHHHHHHHH
Confidence            5889999999999999999973

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.04  E-value=0.12  Score=29.13  Aligned_cols=22  Identities=23%  Similarity=0.572  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|..
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elv_A            9 LYDCHICERKFKNELDRDRHML   30 (36)
T ss_dssp             CEECSSSCCEESSHHHHHHHHT
T ss_pred             CeECCCCCCccCCHHHHHHHHH
Confidence            5889999999999999999975

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=91.02  E-value=0.1  Score=27.60  Aligned_cols=22  Identities=18%  Similarity=0.439  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      ++.|.+|...|.....|..|..
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHIL   23 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHT
T ss_pred             CccCCCCCchhCCHHHHHHHHH
Confidence            5789999999999999999975

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=90.99  E-value=0.099  Score=47.98  Aligned_cols=32  Identities=25%  Similarity=0.445  Sum_probs=29.1

Q ss_pred             eeccccccccCCHHHHHHhhcCcchHHHHHHH
Q 045121            3 WSCALCQVSTTSKRDLDEHLHGKKHKARKKDY   34 (202)
Q Consensus         3 w~C~lC~vt~tse~~l~~Hl~GkkHk~~~e~l   34 (202)
                      .+|..|+--|.++..+..||.||+|+.+.+..
T Consensus       293 l~C~~c~K~Fs~~~v~~~hL~GKkh~K~~~~~  324 (402)
T 4dgw_A          293 IYCPFCSRWFKTSSVFESHLVGKIHKKNESKR  324 (402)
T ss_dssp             ECBTTTTBCBSSHHHHHTTSSSHHHHHHHHHS
T ss_pred             eeehhhhhhhccccccHHHhcccccchhHHHH
Confidence            58999999999999999999999999987553

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=90.63  E-value=0.14  Score=26.94  Aligned_cols=22  Identities=23%  Similarity=0.466  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|..+|.....|..|..
T Consensus         3 ~~~C~~C~~~f~~~~~l~~H~~   24 (30)
T 2m0d_A            3 PYQCDYCGRSFSDPTSKMRHLE   24 (30)
T ss_dssp             CEECTTTCCEESCHHHHHHHHH
T ss_pred             CccCCCCCcccCCHHHHHHHHH
Confidence            5889999999999999999974

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=90.48  E-value=0.14  Score=28.89  Aligned_cols=22  Identities=23%  Similarity=0.427  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|..
T Consensus        11 ~~~C~~C~k~f~~~~~l~~H~~   32 (37)
T 1p7a_A           11 PFQCPDCDRSFSRSDHLALHRK   32 (37)
T ss_dssp             SBCCTTTCCCBSSHHHHHHHHG
T ss_pred             CccCCCCCcccCcHHHHHHHHH
Confidence            5889999999999999999974

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.47  E-value=0.12  Score=29.08  Aligned_cols=22  Identities=36%  Similarity=0.863  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|..
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elq_A            9 PFKCSLCEYATRSKSNLKAHMN   30 (36)
T ss_dssp             SEECSSSSCEESCHHHHHHHHH
T ss_pred             CccCCCCCchhCCHHHHHHHHH
Confidence            5899999999999999999973

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=89.81  E-value=0.052  Score=28.41  Aligned_cols=22  Identities=18%  Similarity=0.502  Sum_probs=20.1

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|+..|.....|..|..
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~   23 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIR   23 (26)
Confidence            5789999999999999999964

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.24  E-value=0.13  Score=28.81  Aligned_cols=22  Identities=27%  Similarity=0.688  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elt_A            9 PYKCPQCSYASAIKANLNVHLR   30 (36)
T ss_dssp             SEECSSSSCEESSHHHHHHHHH
T ss_pred             CCCCCCCCcccCCHHHHHHHHH
Confidence            5899999999999999999974

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=90.20  E-value=0.18  Score=26.15  Aligned_cols=21  Identities=14%  Similarity=0.355  Sum_probs=19.3

Q ss_pred             eecccccccCCCHHHHHhhhc
Q 045121          137 FWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       137 ~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      |.|.+|+..|.+...|..|++
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~   22 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQR   22 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGG
T ss_pred             ccCCCCCCcCCCHHHHHHHHH
Confidence            679999999999999999974

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.96  E-value=0.15  Score=28.71  Aligned_cols=22  Identities=27%  Similarity=0.723  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|..
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~   30 (37)
T 2elo_A            9 SYSCPVCEKSFSEDRLIKSHIK   30 (37)
T ss_dssp             CCEETTTTEECSSHHHHHHHHH
T ss_pred             CcCCCCCCCccCCHHHHHHHHH
Confidence            5789999999999999999974

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=89.82  E-value=0.17  Score=28.41  Aligned_cols=22  Identities=18%  Similarity=0.531  Sum_probs=20.1

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      ++.|.+|...|.....|..|+.
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~   23 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHIT   23 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHH
T ss_pred             cccCCCCCchhCCHHHHHHHHH
Confidence            5789999999999999999974

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=89.77  E-value=0.11  Score=27.12  Aligned_cols=22  Identities=23%  Similarity=0.543  Sum_probs=20.1

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|..
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~   23 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLK   23 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHH
T ss_pred             CCcCCCCCcccCCHHHHHHHHH
Confidence            5889999999999999999973

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=89.74  E-value=0.18  Score=26.41  Aligned_cols=22  Identities=27%  Similarity=0.382  Sum_probs=19.9

Q ss_pred             ceecccccccCCCHHHHHhhhc
Q 045121          136 EFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       136 ~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      .|.|++|+..|.....|..|+.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~   23 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYR   23 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            3689999999999999999974

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=89.74  E-value=0.16  Score=31.67  Aligned_cols=22  Identities=14%  Similarity=0.321  Sum_probs=20.0

Q ss_pred             cceecccccccCCCHHHHHhhh
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHK  156 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl  156 (202)
                      ..++|+.|+|+|++-.+|..|.
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHK   28 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHH
T ss_pred             CcCeeccccceehhhHHHhhhh
Confidence            4579999999999999999995

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.64  E-value=0.19  Score=29.35  Aligned_cols=22  Identities=23%  Similarity=0.614  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        11 ~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2eos_A           11 PYPCEICGTRFRHLQTLKSHLR   32 (42)
T ss_dssp             CBCCSSSCCCBSSHHHHHHHTT
T ss_pred             CEECCCCCCccCCHHHHHHHHH
Confidence            5889999999999999999975

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.61  E-value=0.18  Score=30.01  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|+....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emg_A           12 PFICSECGKVFTHKTNLIIHQK   33 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHT
T ss_pred             CEECCccCcccCCHHHHHHHHH
Confidence            5889999999999999999975

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.61  E-value=0.15  Score=28.65  Aligned_cols=22  Identities=27%  Similarity=0.564  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2els_A            9 IFTCEYCNKVFKFKHSLQAHLR   30 (36)
T ss_dssp             CEECTTTCCEESSHHHHHHHHH
T ss_pred             CEECCCCCceeCCHHHHHHHHH
Confidence            5899999999999999999974

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=89.59  E-value=0.15  Score=26.84  Aligned_cols=22  Identities=18%  Similarity=0.715  Sum_probs=20.0

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|..
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIK   23 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHH
Confidence            5789999999999999999964

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.44  E-value=0.19  Score=29.13  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~   31 (41)
T 2ept_A           10 VYECQECGKSFRQKGSLTLHER   31 (41)
T ss_dssp             CEECSSSCCEESSHHHHHHHGG
T ss_pred             CeECCCCCCCcCCHHHHHHHHH
Confidence            5889999999999999999974

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.38  E-value=0.2  Score=30.00  Aligned_cols=22  Identities=18%  Similarity=0.457  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|+....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eon_A           12 PYKCQVCGKAFRVSSHLVQHHS   33 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHTT
T ss_pred             ccCCCCCCcccCcHHHHHHHHH
Confidence            5889999999999999999974

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=89.37  E-value=0.19  Score=29.27  Aligned_cols=22  Identities=23%  Similarity=0.465  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.+...|..|+.
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~   31 (42)
T 2el5_A           10 PYECSECGKAFNRKDQLISHQR   31 (42)
T ss_dssp             SEECSSSCCEESSHHHHHHHHG
T ss_pred             CccCCCcChhhCCHHHHHHHHH
Confidence            5899999999999999999974

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.31  E-value=0.19  Score=29.50  Aligned_cols=22  Identities=27%  Similarity=0.357  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2en7_A           12 PYVCNECGKAFRSKSYLIIHTR   33 (44)
T ss_dssp             SSCCTTTCCCCSSHHHHHHHHT
T ss_pred             CeECCCCCCccCCHHHHHHHhh
Confidence            5889999999999999999984

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.93  E-value=0.21  Score=29.71  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|++...|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep3_A           12 PYRCAECGKAFTDRSNLFTHQK   33 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHT
T ss_pred             CeECCCCCchhCCHHHHHHHHH
Confidence            5899999999999999999974

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=88.91  E-value=0.2  Score=30.26  Aligned_cols=21  Identities=24%  Similarity=0.578  Sum_probs=19.9

Q ss_pred             ceeccccccccCCHHHHHHhh
Q 045121            2 DWSCALCQVSTTSKRDLDEHL   22 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl   22 (202)
                      +|.|..|..+|+....|..|.
T Consensus         8 p~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            8 RFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCEETTTTEECSCHHHHHHHH
T ss_pred             CeECCCCCCccCCHhHccCcC
Confidence            689999999999999999997

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.89  E-value=0.21  Score=29.59  Aligned_cols=22  Identities=23%  Similarity=0.552  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|+....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yrj_A           12 PYRCGECGKAFAQKANLTQHQR   33 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHT
T ss_pred             CeECCCCCCccCCHHHHHHHHH
Confidence            5899999999999999999974

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.88  E-value=0.22  Score=29.60  Aligned_cols=22  Identities=23%  Similarity=0.381  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|+....|..|+.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2enf_A           12 PYKCNECGKVFTQNSHLVRHRG   33 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHHT
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            5889999999999999999974

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.87  E-value=0.22  Score=29.67  Aligned_cols=22  Identities=27%  Similarity=0.516  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|++...|..|+.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emf_A           12 HFECTECGKAFTRKSTLSMHQK   33 (46)
T ss_dssp             CEECSSSCCEESCHHHHHHHGG
T ss_pred             CeECCCCCchhCCHHHHHHHHH
Confidence            5899999999999999999974

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.83  E-value=0.2  Score=29.69  Aligned_cols=22  Identities=27%  Similarity=0.484  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep1_A           12 PYECSDCGKSFIKKSQLHVHQR   33 (46)
T ss_dssp             SSCCSSSCCCCSSHHHHHHHHG
T ss_pred             CcCCCCCCchhCCHHHHHHHHH
Confidence            5889999999999999999975

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=88.80  E-value=0.21  Score=26.17  Aligned_cols=22  Identities=23%  Similarity=0.369  Sum_probs=20.0

Q ss_pred             ceecccccccCCCHHHHHhhhc
Q 045121          136 EFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       136 ~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      .|-|++|+..|.....|..|++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvh_A            3 PFSCSLCPQRSRDFSAMTKHLR   24 (27)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CccCCCcChhhCCHHHHHHHHH
Confidence            4789999999999999999974

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.80  E-value=0.22  Score=29.51  Aligned_cols=22  Identities=27%  Similarity=0.498  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yts_A           12 PYICNECGKSFIQKSHLNRHRR   33 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHGG
T ss_pred             CEECCCCChhhCChHHHHHHHH
Confidence            5899999999999999999974

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=88.79  E-value=0.21  Score=28.69  Aligned_cols=22  Identities=23%  Similarity=0.694  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.+...|..|..
T Consensus         6 ~~~C~~C~k~f~~~~~L~~H~~   27 (39)
T 1njq_A            6 SYTCSFCKREFRSAQALGGHMN   27 (39)
T ss_dssp             SEECTTTCCEESSHHHHHHHHH
T ss_pred             ceECCCCCcccCCHHHHHHHHH
Confidence            5789999999999999999974

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.79  E-value=0.23  Score=29.63  Aligned_cols=22  Identities=23%  Similarity=0.478  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yth_A           12 PFQCEECGKRFTQNSHLHSHQR   33 (46)
T ss_dssp             SBCCSSSCCCBSSHHHHHHHGG
T ss_pred             CCCCCCCCcccCCHHHHHHHHH
Confidence            5889999999999999999974

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=88.78  E-value=0.2  Score=27.68  Aligned_cols=22  Identities=18%  Similarity=0.338  Sum_probs=20.2

Q ss_pred             ceecccccccCCCHHHHHhhhc
Q 045121          136 EFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       136 ~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      .|.|.+|...|.....|..|+.
T Consensus         7 ~~~C~~C~k~f~~~~~L~~H~~   28 (35)
T 2elx_A            7 GYVCALCLKKFVSSIRLRSHIR   28 (35)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CeECCCCcchhCCHHHHHHHHH
Confidence            5889999999999999999974

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.74  E-value=0.23  Score=29.61  Aligned_cols=22  Identities=18%  Similarity=0.495  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|+....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em6_A           12 CYKCDVCGKEFSQSSHLQTHQR   33 (46)
T ss_dssp             CCBCSSSCCBCSSHHHHHHHHT
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            5889999999999999999974

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=88.73  E-value=0.22  Score=29.33  Aligned_cols=22  Identities=27%  Similarity=0.600  Sum_probs=20.1

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      .+.|++|...+++..+|+.|..
T Consensus         3 k~~CpvCk~q~Pd~kt~~~H~e   24 (28)
T 2jvx_A            3 DFCCPKCQYQAPDMDTLQIHVM   24 (28)
T ss_dssp             CEECTTSSCEESSHHHHHHHHH
T ss_pred             cccCccccccCcChHHHHHHHH
Confidence            5789999999999999999964

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.72  E-value=0.22  Score=28.81  Aligned_cols=22  Identities=27%  Similarity=0.572  Sum_probs=20.0

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|..+|.....|..|..
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~   31 (42)
T 2yte_A           10 PYSCAECKETFSDNNRLVQHQK   31 (42)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CeECCCCCCccCCHHHHHHHHH
Confidence            5789999999999999999964

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=88.71  E-value=0.22  Score=26.12  Aligned_cols=22  Identities=27%  Similarity=0.288  Sum_probs=20.0

Q ss_pred             ceecccccccCCCHHHHHhhhc
Q 045121          136 EFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       136 ~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      .|-|.+|+..|.+...|..|++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYR   24 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHT
T ss_pred             CccCCCCCcccCCHHHHHHHHH
Confidence            4789999999999999999975

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.69  E-value=0.19  Score=29.18  Aligned_cols=22  Identities=23%  Similarity=0.495  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|..
T Consensus        11 ~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2ytb_A           11 PYRCDQCGKAFSQKGSLIVHIR   32 (42)
T ss_dssp             SBCCTTTTCCBSSHHHHHTTGG
T ss_pred             CeeCCCccchhCCHHHHHHHHH
Confidence            5889999999999999999974

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.61  E-value=0.22  Score=29.60  Aligned_cols=22  Identities=18%  Similarity=0.596  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|+..|+....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eml_A           12 PYECSVCGKAFSHRQSLSVHQR   33 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHG
T ss_pred             CeeCCCcCCccCCHHHHHHHHH
Confidence            5899999999999999999974

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.60  E-value=0.23  Score=29.63  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.+...|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em5_A           12 SHQCHECGRGFTLKSHLNQHQR   33 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHT
T ss_pred             CeECCcCCCccCCHHHHHHHHH
Confidence            5899999999999999999974

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.59  E-value=0.22  Score=29.56  Aligned_cols=22  Identities=18%  Similarity=0.484  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq3_A           12 PYECNQCGKAFSVRSSLTTHQA   33 (46)
T ss_dssp             SSEETTTTEECSSHHHHHHHHT
T ss_pred             CeECCCCChhhCCHHHHHHHHH
Confidence            5889999999999999999974

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=88.57  E-value=0.23  Score=27.57  Aligned_cols=23  Identities=13%  Similarity=0.205  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.....|..|++
T Consensus         6 k~~~C~~C~k~f~~~~~l~~H~~   28 (35)
T 1srk_A            6 RPFVCRICLSAFTTKANCARHLK   28 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHG
T ss_pred             cCeeCCCCCcccCCHHHHHHHHH
Confidence            35889999999999999999975

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.55  E-value=0.2  Score=29.91  Aligned_cols=22  Identities=23%  Similarity=0.439  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|+....|..|+.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2en9_A           12 LFKCNECKKTFTQSSSLTVHQR   33 (46)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CEECCccCcccCCHHHHHHHHH
Confidence            5889999999999999999974

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=88.26  E-value=0.085  Score=28.08  Aligned_cols=22  Identities=23%  Similarity=0.483  Sum_probs=20.1

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|..
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVR   23 (29)
Confidence            5789999999999999999974

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.53  E-value=0.24  Score=29.47  Aligned_cols=22  Identities=18%  Similarity=0.462  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|+....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2epz_A           12 PFDCIDCGKAFSDHIGLNQHRR   33 (46)
T ss_dssp             SBCCTTTCCCBSSHHHHHHHHT
T ss_pred             CeECCCCCceeCCHHHHHHHHH
Confidence            5889999999999999999975

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.50  E-value=0.23  Score=29.16  Aligned_cols=22  Identities=23%  Similarity=0.453  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2eoj_A           12 PYECCECGKVFSRKDQLVSHQK   33 (44)
T ss_dssp             SCEETTTTEECSSHHHHHHHHT
T ss_pred             CeeCCCCCCccCCHHHHHHHHH
Confidence            5889999999999999999975

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=88.49  E-value=0.23  Score=28.76  Aligned_cols=22  Identities=27%  Similarity=0.489  Sum_probs=20.1

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|+....|..|..
T Consensus        11 ~~~C~~C~k~f~~~~~l~~H~~   32 (42)
T 2epc_A           11 PYLCGQCGKSFTQRGSLAVHQR   32 (42)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHhh
Confidence            5899999999999999999963

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.46  E-value=0.23  Score=28.82  Aligned_cols=22  Identities=18%  Similarity=0.452  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|+....|..|+.
T Consensus        11 ~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2en2_A           11 PYKCETCGARFVQVAHLRAHVL   32 (42)
T ss_dssp             SEECTTTCCEESSHHHHHHHTH
T ss_pred             CEeCCCcChhhCCHHHHHHHHH
Confidence            5899999999999999999974

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=88.39  E-value=0.23  Score=25.93  Aligned_cols=22  Identities=14%  Similarity=0.149  Sum_probs=19.9

Q ss_pred             ceecccccccCCCHHHHHhhhc
Q 045121          136 EFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       136 ~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      .|.|.+|+..+.+...|..|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLR   23 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHH
Confidence            4789999999999999999974

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.39  E-value=0.24  Score=29.53  Aligned_cols=22  Identities=23%  Similarity=0.437  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|+....|..|+.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2ytp_A           12 HYECSECGKAFARKSTLIMHQR   33 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHT
T ss_pred             CeECCcCCcccCCHHHHHHHHH
Confidence            5889999999999999999975

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=88.37  E-value=0.62  Score=32.62  Aligned_cols=33  Identities=6%  Similarity=0.038  Sum_probs=26.3

Q ss_pred             cceecccccccCCCHHHHHhhhcchhHHHHhhhhh
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKRGKKHMARSNGSR  169 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~GkKH~~k~~~~~  169 (202)
                      ..|.|.+|+..|.....|..|++  .|........
T Consensus        64 ~~~~C~~C~~~f~~~~~l~~H~~--~~~~~~~~~~   96 (110)
T 2csh_A           64 KPYECNICAKRFMWRDSFHRHVT--SCTKSYEAAK   96 (110)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHH--HHHHHHHHHH
T ss_pred             CCeeCCCCcchhcCHHHHHHHHH--Hccccccchh
Confidence            35899999999999999999984  5665555444

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=88.11  E-value=0.089  Score=27.95  Aligned_cols=22  Identities=23%  Similarity=0.520  Sum_probs=20.0

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|+..|.....|..|..
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVR   24 (30)
Confidence            5789999999999999999974

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=88.36  E-value=0.2  Score=29.89  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emj_A           12 PFECAECGKSFSISSQLATHQR   33 (46)
T ss_dssp             SEECSSSSCEESSHHHHHHHHH
T ss_pred             CEECCCCCcccCCHHHHHHHHH
Confidence            5899999999999999999973

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.32  E-value=0.24  Score=29.34  Aligned_cols=22  Identities=23%  Similarity=0.258  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|..
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (44)
T 2epv_A           12 PYECNECGKAFIWKSLLIVHER   33 (44)
T ss_dssp             SEECSSSCCEESSHHHHHHHHG
T ss_pred             CeECCCCCcccCchHHHHHHHh
Confidence            5899999999999999999975

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.31  E-value=0.21  Score=29.77  Aligned_cols=22  Identities=23%  Similarity=0.428  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emy_A           12 PYECHECGKAFSRKYQLISHQR   33 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH
T ss_pred             CcCCCCCCcccCcHHHHHHHHH
Confidence            5899999999999999999974

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.31  E-value=0.25  Score=29.31  Aligned_cols=22  Identities=32%  Similarity=0.437  Sum_probs=20.1

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.+...|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eov_A           12 PYKCSDCGKSFTWKSRLRIHQK   33 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHHH
T ss_pred             CccCCccChhhCCHHHHHHHHH
Confidence            5889999999999999999973

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.25  E-value=0.21  Score=29.83  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|+....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yto_A           12 PYKCSDCGKAFTRKSGLHIHQQ   33 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH
T ss_pred             CEECcccCCccCCHhHHHHHHH
Confidence            5899999999999999999973

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.23  E-value=0.24  Score=29.45  Aligned_cols=22  Identities=18%  Similarity=0.469  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq2_A           12 PYQCNECGKAFSQTSKLARHQR   33 (46)
T ss_dssp             SSSCCSSCCCCSSHHHHHHHGG
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            5789999999999999999973

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.22  E-value=0.24  Score=29.43  Aligned_cols=22  Identities=23%  Similarity=0.484  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2en1_A           12 PFKCEECGKRFTQNSQLHSHQR   33 (46)
T ss_dssp             SEEETTTTEEESSHHHHHHHGG
T ss_pred             CeeCCCCCcccCCHHHHHHHHH
Confidence            5899999999999999999974

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.21  E-value=0.26  Score=29.20  Aligned_cols=22  Identities=23%  Similarity=0.291  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eop_A           12 PHECRECGKSFSFNSQLIVHQR   33 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHT
T ss_pred             CeeCCCCCchhCCHHHHHHHHH
Confidence            5889999999999999999975

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=88.21  E-value=0.22  Score=26.28  Aligned_cols=22  Identities=27%  Similarity=0.569  Sum_probs=20.0

Q ss_pred             ceecccccccCCCHHHHHhhhc
Q 045121          136 EFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       136 ~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      .|-|.+|+..|.....|..|++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvg_A            3 PYRCPLCRAGCPSLASMQAHMR   24 (27)
T ss_dssp             TEEETTTTEEESCHHHHHHHHT
T ss_pred             CcCCCCCCcccCCHHHHHHHHH
Confidence            4789999999999999999974

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.14  E-value=0.25  Score=29.29  Aligned_cols=22  Identities=18%  Similarity=0.407  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.+...|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eme_A           12 PYVCDYCGKAFGLSAELVRHQR   33 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHG
T ss_pred             CeECCCCChhhCCHHHHHHHHH
Confidence            5899999999999999999974

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.14  E-value=0.25  Score=29.37  Aligned_cols=22  Identities=18%  Similarity=0.446  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq1_A           12 PYKCNECGKAFRAHSNLTTHQV   33 (46)
T ss_dssp             CCCCTTTTCCCSSHHHHHHHHT
T ss_pred             CeECCcCChhhCCHHHHHHHHH
Confidence            5789999999999999999975

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.13  E-value=0.24  Score=29.49  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|+....|..|+.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2yti_A           12 PYKCNECGKVFTQNSHLARHRG   33 (46)
T ss_dssp             TTCCSSSCCCCSSHHHHHHHHT
T ss_pred             CeECCCCCcccCChhHHHHHhH
Confidence            5789999999999999999974

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.13  E-value=0.21  Score=28.23  Aligned_cols=22  Identities=23%  Similarity=0.563  Sum_probs=20.0

Q ss_pred             ceeccccccccCCH-HHHHHhhc
Q 045121            2 DWSCALCQVSTTSK-RDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse-~~l~~Hl~   23 (202)
                      +|.|.+|...|... ..|..|..
T Consensus         9 ~~~C~~C~k~f~~~~~~L~~H~~   31 (37)
T 2elp_A            9 AMKCPYCDFYFMKNGSDLQRHIW   31 (37)
T ss_dssp             CEECSSSSCEECSSCHHHHHHHH
T ss_pred             CeECCCCChhhccCHHHHHHHHH
Confidence            58899999999999 99999973

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.12  E-value=0.25  Score=28.88  Aligned_cols=22  Identities=27%  Similarity=0.526  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2eof_A           12 PYECNECQKAFNTKSNLMVHQR   33 (44)
T ss_dssp             SEECTTTCCEESCHHHHHHHHH
T ss_pred             CeECCCCCcccCCHhHHHHHHH
Confidence            5899999999999999999973

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.06  E-value=0.27  Score=28.91  Aligned_cols=22  Identities=23%  Similarity=0.594  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2emb_A           12 RYECSKCQATFNLRKHLIQHQK   33 (44)
T ss_dssp             SEECTTTCCEESCHHHHHHHGG
T ss_pred             CeECCCCCCccCCHHHHHHHHH
Confidence            5899999999999999999974

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.06  E-value=0.21  Score=29.85  Aligned_cols=22  Identities=27%  Similarity=0.646  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoz_A           12 PYSCNVCGKAFVLSAHLNQHLR   33 (46)
T ss_dssp             SEEETTTTEEESSHHHHHHHHH
T ss_pred             CeECcccChhhCCHHHHHHHHH
Confidence            5899999999999999999963

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.03  E-value=0.27  Score=29.18  Aligned_cols=22  Identities=27%  Similarity=0.526  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em7_A           12 PYKCEECGKGFICRRDLYTHHM   33 (46)
T ss_dssp             SEECSSSCCEESCHHHHHHHGG
T ss_pred             CccCCCccchhCCHHHHHHHHH
Confidence            5899999999999999999974

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=88.03  E-value=0.21  Score=26.42  Aligned_cols=21  Identities=29%  Similarity=0.574  Sum_probs=19.4

Q ss_pred             ceeccccccccCCHHHHHHhh
Q 045121            2 DWSCALCQVSTTSKRDLDEHL   22 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl   22 (202)
                      ++.|..|...|.....|..|.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~   22 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHA   22 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHH
T ss_pred             CcCCcccCcccCChHHHHHHH
Confidence            578999999999999999994

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.02  E-value=0.24  Score=29.34  Aligned_cols=22  Identities=23%  Similarity=0.468  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eoe_A           12 PYKCNECGKVFTQNSHLANHQR   33 (46)
T ss_dssp             SSEETTTTEECSSHHHHHHHHG
T ss_pred             CeECCCcChhhCCHHHHHHHHH
Confidence            5889999999999999999974

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.02  E-value=0.25  Score=29.31  Aligned_cols=22  Identities=27%  Similarity=0.507  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (45)
T 2epu_A           12 PFECTHCGKSFRAKGNLVTHQR   33 (45)
T ss_dssp             SEEETTTTEEESSHHHHHHHHT
T ss_pred             CccCCCCCCccCChHHHHHHHH
Confidence            5889999999999999999974

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.99  E-value=0.26  Score=29.25  Aligned_cols=22  Identities=18%  Similarity=0.377  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.+...|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ene_A           12 PYKCNECGKVFRHNSYLSRHQR   33 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHT
T ss_pred             CeECCCCCchhCChHHHHHHHh
Confidence            5899999999999999999975

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.97  E-value=0.27  Score=27.35  Aligned_cols=23  Identities=17%  Similarity=0.224  Sum_probs=20.5

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|...|.+...|..|+.
T Consensus         8 ~~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elr_A            8 KTHLCDMCGKKFKSKGTLKSHKL   30 (36)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCeecCcCCCCcCchHHHHHHHH
Confidence            45789999999999999999974

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.97  E-value=0.22  Score=29.52  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytf_A           12 PFECSECQKAFNTKSNLIVHQR   33 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CcCCCCCCcccCCHHHHHHHHH
Confidence            5899999999999999999974

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.91  E-value=0.22  Score=29.51  Aligned_cols=22  Identities=23%  Similarity=0.525  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eor_A           12 PYNCEECGKAFIHDSQLQEHQR   33 (46)
T ss_dssp             SEECTTTCCEESSHHHHHHHHH
T ss_pred             CccCCCCCCCcCCHHHHHHHHH
Confidence            5899999999999999999974

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.89  E-value=0.26  Score=29.26  Aligned_cols=22  Identities=32%  Similarity=0.558  Sum_probs=20.5

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ysp_A           12 PYKCEKCGKGYNSKFNLDMHQK   33 (46)
T ss_dssp             SEEETTTTEEESCHHHHHHHHT
T ss_pred             CeECCCCCCccCCHHHHHHHHH
Confidence            5899999999999999999975

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.89  E-value=0.26  Score=29.29  Aligned_cols=22  Identities=27%  Similarity=0.629  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|+....|..|+.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2em3_A           12 PYECKVCSKAFTQKAHLAQHQK   33 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            5899999999999999999973

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.88  E-value=0.26  Score=29.26  Aligned_cols=22  Identities=23%  Similarity=0.490  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|..
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emi_A           12 HYECSECGKAFIQKSTLSMHQR   33 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHG
T ss_pred             CCCCCCCCcccCCHHHHHHHHh
Confidence            5899999999999999999974

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=87.85  E-value=0.28  Score=29.06  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2el4_A           12 PYGCSQCAKTFSLKSQLIVHQR   33 (46)
T ss_dssp             SEECSSSSCEESSHHHHHHHGG
T ss_pred             ceECCCCCchhCCHHHHHHHHH
Confidence            5899999999999999999974

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.84  E-value=0.29  Score=29.08  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|+....|..|..
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2ytn_A           12 PYKCNECGKVFTQNSHLARHRG   33 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHGG
T ss_pred             CeECCCCCCeeCCHHHHHHHhh
Confidence            5889999999999999999974

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=87.82  E-value=0.28  Score=29.17  Aligned_cols=22  Identities=18%  Similarity=0.484  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ema_A           12 RYKCNECGKVFSRNSQLSQHQK   33 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHT
T ss_pred             CcCCCCCcchhCCHHHHHHHHH
Confidence            5899999999999999999974

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.81  E-value=0.3  Score=29.12  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytq_A           12 PYGCSECGKAFSSKSYLIIHMR   33 (46)
T ss_dssp             SCBCSSSCCBCSCHHHHHHHHT
T ss_pred             CcCCCccChhhCChHHHHHHHH
Confidence            5889999999999999999975

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=87.75  E-value=0.19  Score=26.46  Aligned_cols=22  Identities=14%  Similarity=0.040  Sum_probs=20.0

Q ss_pred             ceecccccccCCCHHHHHhhhc
Q 045121          136 EFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       136 ~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      .|.|.+|+..|.+...|..|+.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHIL   23 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHT
T ss_pred             CccCCCCCchhCCHHHHHHHHH
Confidence            4789999999999999999975

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.74  E-value=0.29  Score=29.04  Aligned_cols=22  Identities=18%  Similarity=0.401  Sum_probs=20.5

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (47)
T 2epx_A           12 PYECIECGKAFIQNTSLIRHWR   33 (47)
T ss_dssp             SBCCSSSCCCBSSHHHHHHHHT
T ss_pred             CEECCccCchhCChHHHHHHhH
Confidence            5889999999999999999976

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.74  E-value=0.28  Score=29.15  Aligned_cols=22  Identities=18%  Similarity=0.368  Sum_probs=20.5

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eq0_A           12 PYKCHECGKVFRRNSHLARHQL   33 (46)
T ss_dssp             CEECTTTCCEESSHHHHHHHHT
T ss_pred             CeECCCCCchhCCHHHHHHHHH
Confidence            5899999999999999999975

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=87.72  E-value=0.3  Score=27.45  Aligned_cols=23  Identities=13%  Similarity=0.154  Sum_probs=20.6

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|++|+..|.....|..|+.
T Consensus        10 k~~~C~~C~k~f~~~~~l~~H~~   32 (37)
T 1p7a_A           10 KPFQCPDCDRSFSRSDHLALHRK   32 (37)
T ss_dssp             SSBCCTTTCCCBSSHHHHHHHHG
T ss_pred             CCccCCCCCcccCcHHHHHHHHH
Confidence            35889999999999999999974

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.66  E-value=0.25  Score=27.67  Aligned_cols=23  Identities=22%  Similarity=0.358  Sum_probs=20.6

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.+...|..|++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elq_A            8 KPFKCSLCEYATRSKSNLKAHMN   30 (36)
T ss_dssp             CSEECSSSSCEESCHHHHHHHHH
T ss_pred             CCccCCCCCchhCCHHHHHHHHH
Confidence            35889999999999999999974

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.65  E-value=0.29  Score=29.10  Aligned_cols=22  Identities=23%  Similarity=0.481  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep0_A           12 PYKCDVCHKSFRYGSSLTVHQR   33 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHT
T ss_pred             CeeCcccCcccCChHHHHHHHH
Confidence            5899999999999999999975

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.60  E-value=0.26  Score=29.34  Aligned_cols=22  Identities=23%  Similarity=0.469  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytt_A           12 PYQCSECGKSFSGSYRLTQHWI   33 (46)
T ss_dssp             TTCCSSSCCCCSSHHHHHHHHT
T ss_pred             CeeCCCCCcccCCHHHHHHHHH
Confidence            5889999999999999999974

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.49  E-value=0.22  Score=28.46  Aligned_cols=20  Identities=30%  Similarity=0.610  Sum_probs=19.0

Q ss_pred             ceeccccccccCCHHHHHHh
Q 045121            2 DWSCALCQVSTTSKRDLDEH   21 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~H   21 (202)
                      +|.|.+|..+|.....|..|
T Consensus         9 ~~~C~~C~k~f~~~~~L~~H   28 (37)
T 2elm_A            9 LYYCSQCHYSSITKNCLKRH   28 (37)
T ss_dssp             EEECSSSSCEEECHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHH
Confidence            58899999999999999999

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.46  E-value=0.24  Score=29.59  Aligned_cols=22  Identities=14%  Similarity=0.249  Sum_probs=20.1

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eom_A           12 GHRCSDCGKFFLQASNFIQHRR   33 (46)
T ss_dssp             SCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CcCCCCCCCeeCChHHHHHHHH
Confidence            5789999999999999999973

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.36  E-value=0.27  Score=27.34  Aligned_cols=23  Identities=13%  Similarity=0.169  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.....|..|++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elt_A            8 KPYKCPQCSYASAIKANLNVHLR   30 (36)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHH
T ss_pred             CCCCCCCCCcccCCHHHHHHHHH
Confidence            35899999999999999999974

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.34  E-value=0.29  Score=27.41  Aligned_cols=23  Identities=9%  Similarity=0.183  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|...|.....|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elv_A            8 LLYDCHICERKFKNELDRDRHML   30 (36)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            35889999999999999999975

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.32  E-value=0.29  Score=29.04  Aligned_cols=22  Identities=32%  Similarity=0.643  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|+....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep2_A           12 PYECSICGKSFTKKSQLHVHQQ   33 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CcCCCCCCcccCCHHHHHHHHH
Confidence            5899999999999999999974

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.32  E-value=0.28  Score=29.06  Aligned_cols=22  Identities=18%  Similarity=0.468  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytr_A           12 PYKCNECGKAFSQTSKLARHQR   33 (46)
T ss_dssp             TTCCTTTCCCCSSHHHHHHHHT
T ss_pred             CcCCCCCCCccCCHHHHHHHHH
Confidence            5789999999999999999974

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=87.28  E-value=0.32  Score=28.98  Aligned_cols=22  Identities=18%  Similarity=0.433  Sum_probs=20.1

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emk_A           12 PYECKECGKAFSQTTHLIQHQR   33 (46)
T ss_dssp             SCBCSSSCCBCSCHHHHHHHHH
T ss_pred             ceECCCCCchhCCHHHHHHHHH
Confidence            5889999999999999999973

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=87.26  E-value=0.32  Score=28.80  Aligned_cols=22  Identities=23%  Similarity=0.309  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em9_A           12 PYNCKECGKSFRWASCLLKHQR   33 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHGG
T ss_pred             CeECCccccccCChHHHHHHHH
Confidence            5899999999999999999974

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.25  E-value=0.26  Score=29.37  Aligned_cols=22  Identities=18%  Similarity=0.596  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|..
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2enh_A           12 PYECDVCRKAFSHHASLTQHQR   33 (46)
T ss_dssp             SCBCTTTCCBCSSSHHHHHHGG
T ss_pred             CcCCCCcCchhCCHHHHHHHHH
Confidence            5789999999999999999974

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=87.24  E-value=0.29  Score=25.60  Aligned_cols=22  Identities=9%  Similarity=0.137  Sum_probs=19.9

Q ss_pred             ceecccccccCCCHHHHHhhhc
Q 045121          136 EFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       136 ~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      .|.|.+|...|.....|..|+.
T Consensus         3 ~~~C~~C~~~f~~~~~l~~H~~   24 (30)
T 2m0d_A            3 PYQCDYCGRSFSDPTSKMRHLE   24 (30)
T ss_dssp             CEECTTTCCEESCHHHHHHHHH
T ss_pred             CccCCCCCcccCCHHHHHHHHH
Confidence            4789999999999999999974

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.21  E-value=0.26  Score=28.98  Aligned_cols=22  Identities=27%  Similarity=0.492  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|..
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~   31 (44)
T 2emx_A           10 PFGCSCCEKAFSSKSYLLVHQQ   31 (44)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CccCCCCCcccCCHHHHHHHHH
Confidence            5899999999999999999963

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.18  E-value=0.3  Score=28.99  Aligned_cols=22  Identities=27%  Similarity=0.489  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|+....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytj_A           12 PYICAECGKAFTIRSNLIKHQK   33 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CeECCCCChhhCCHHHHHHHHH
Confidence            5899999999999999999973

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.16  E-value=0.26  Score=29.37  Aligned_cols=22  Identities=18%  Similarity=0.483  Sum_probs=20.0

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|+....|..|..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoh_A           12 PYECKECRKTFIQIGHLNQHKR   33 (46)
T ss_dssp             SCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CcCCCCcCchhCCHHHHHHHHH
Confidence            5789999999999999999963

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=87.11  E-value=0.31  Score=28.74  Aligned_cols=22  Identities=18%  Similarity=0.256  Sum_probs=20.1

Q ss_pred             ceecccccccCCCHHHHHhhhc
Q 045121          136 EFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       136 ~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      .+.|.+|..+..+..+|.+|..
T Consensus         3 k~~CpvCk~q~Pd~kt~~~H~e   24 (28)
T 2jvx_A            3 DFCCPKCQYQAPDMDTLQIHVM   24 (28)
T ss_dssp             CEECTTSSCEESSHHHHHHHHH
T ss_pred             cccCccccccCcChHHHHHHHH
Confidence            5789999999999999999973

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.11  E-value=0.34  Score=28.83  Aligned_cols=22  Identities=23%  Similarity=0.501  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2elz_A           12 PYKCEDCGKGYNRRLNLDMHQR   33 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHGG
T ss_pred             CeeCcccCchhCCHHHHHHHHH
Confidence            5889999999999999999975

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=87.10  E-value=0.26  Score=30.22  Aligned_cols=22  Identities=18%  Similarity=0.533  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|..
T Consensus         7 p~~C~~C~k~F~~~~~L~~H~~   28 (48)
T 3iuf_A            7 PYACDICGKRYKNRPGLSYHYA   28 (48)
T ss_dssp             CEECTTTCCEESSHHHHHHHHH
T ss_pred             CEECCCcCcccCCHHHHHHHhh
Confidence            5899999999999999999974

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.09  E-value=0.32  Score=28.79  Aligned_cols=22  Identities=18%  Similarity=0.276  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2en8_A           12 SHTCDECGKNFCYISALRIHQR   33 (46)
T ss_dssp             SEECTTTCCEESSHHHHHHHHT
T ss_pred             CeECCCcCcccCCHHHHHHHHH
Confidence            5899999999999999999974

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.01  E-value=0.31  Score=28.93  Aligned_cols=22  Identities=23%  Similarity=0.566  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|+....|..|+.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emh_A           12 PYICTVCGKAFTDRSNLIKHQK   33 (46)
T ss_dssp             SEECTTTCCEESSHHHHHHHHH
T ss_pred             CcCCCCCCchhCCHHHHHHHHH
Confidence            5899999999999999999973

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.97  E-value=0.34  Score=28.68  Aligned_cols=22  Identities=23%  Similarity=0.303  Sum_probs=20.1

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq4_A           12 LYNCKECGKSFSRAPCLLKHER   33 (46)
T ss_dssp             CCCBTTTTBCCSCHHHHHHHHH
T ss_pred             CeECCCCCCccCchHHHHHHHH
Confidence            5889999999999999999973

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=86.94  E-value=0.32  Score=28.95  Aligned_cols=22  Identities=27%  Similarity=0.481  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2el6_A           12 PYKCSQCEKSFSGKLRLLVHQR   33 (46)
T ss_dssp             SEECSSSSCEESSHHHHHHHHG
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            5899999999999999999974

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=86.84  E-value=0.29  Score=30.08  Aligned_cols=20  Identities=25%  Similarity=0.175  Sum_probs=19.5

Q ss_pred             eecccccccCCCHHHHHhhh
Q 045121          137 FWCEVFQVGTHSAVVMEGHK  156 (202)
Q Consensus       137 ~~Ce~C~v~~~se~~~~~Hl  156 (202)
                      |.|.+|-+.+.+...|..|.
T Consensus         6 FiCP~C~~~l~s~~~L~~Hy   25 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHY   25 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHH
T ss_pred             cCCcHHHHHcCCHHHHHHHH
Confidence            89999999999999999998

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.79  E-value=0.28  Score=29.19  Aligned_cols=22  Identities=23%  Similarity=0.490  Sum_probs=20.1

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em2_A           12 PFKCKECGKAFRQNIHLASHLR   33 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CEECCcCCchhCCHHHHHHHHH
Confidence            5899999999999999999964

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.77  E-value=0.26  Score=29.28  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=19.8

Q ss_pred             ceeccccccccCCHHHHHHhh
Q 045121            2 DWSCALCQVSTTSKRDLDEHL   22 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl   22 (202)
                      +|.|.+|...|.....|..|.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~   32 (46)
T 2en3_A           12 PFQCKECGMNFSWSCSLFKHL   32 (46)
T ss_dssp             SEECSSSCCEESSSHHHHHHH
T ss_pred             CeeCcccChhhCCHHHHHHHH
Confidence            589999999999999999997

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.73  E-value=0.29  Score=29.08  Aligned_cols=22  Identities=23%  Similarity=0.539  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytd_A           12 PYKCSECGKAFHRHTHLNEHRR   33 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CeECCCCCCeeCChHHHHHHHH
Confidence            5899999999999999999974

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.72  E-value=0.33  Score=28.72  Aligned_cols=22  Identities=18%  Similarity=0.427  Sum_probs=20.1

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eow_A           12 PYKCNECGKAFRARSSLAIHQA   33 (46)
T ss_dssp             CEECTTSCCEESSHHHHHHHHH
T ss_pred             CeeccccCChhcCHHHHHHHHH
Confidence            5899999999999999999973

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=86.72  E-value=0.13  Score=26.78  Aligned_cols=22  Identities=18%  Similarity=0.259  Sum_probs=19.7

Q ss_pred             ceecccccccCCCHHHHHhhhc
Q 045121          136 EFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       136 ~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      .|-|++|+..|.....|..|++
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~   23 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIR   23 (26)
Confidence            3679999999999999999974

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.70  E-value=0.22  Score=29.62  Aligned_cols=22  Identities=23%  Similarity=0.513  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|+....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytg_A           12 PFKCGECGKSYNQRVHLTQHQR   33 (46)
T ss_dssp             SEECTTTCCEESSSHHHHTTGG
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            5899999999999999999974

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.70  E-value=0.33  Score=28.70  Aligned_cols=22  Identities=23%  Similarity=0.338  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emm_A           12 PHKCNECGKSFIQSAHLIQHQR   33 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CeeCCCCChhhCCHHHHHHHHH
Confidence            5899999999999999999974

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.67  E-value=0.29  Score=29.26  Aligned_cols=22  Identities=14%  Similarity=0.379  Sum_probs=20.1

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|+....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytm_A           12 PYKCMECGKAFGDNSSCTQHQR   33 (46)
T ss_dssp             SSSBTTTTBCCSSHHHHHHHHH
T ss_pred             CcCCCCCCchhCCHHHHHHHHH
Confidence            5789999999999999999974

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.65  E-value=0.28  Score=29.23  Aligned_cols=22  Identities=18%  Similarity=0.478  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|..+|.....|..|..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoy_A           12 CFKCNKCEKTFSCSKYLTQHER   33 (46)
T ss_dssp             CEECSSSCCEESSSHHHHHHHT
T ss_pred             CEECcCCCCcCCCHHHHHHHHH
Confidence            5889999999999999999974

>4f9c_B Protein DBF4 homolog A; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_B* 4f9b_B* 4f9a_B*

Probab=86.62  E-value=0.27  Score=38.99  Aligned_cols=30  Identities=17%  Similarity=0.217  Sum_probs=23.8

Q ss_pred             CcceecccccccCCCHHHHHhhhcchhHHHHhh
Q 045121          134 NFEFWCEVFQVGTHSAVVMEGHKRGKKHMARSN  166 (202)
Q Consensus       134 ~~~~~Ce~C~v~~~se~~~~~Hl~GkKH~~k~~  166 (202)
                      ...-|||+|.+.+.+   |..|+...+|+.-++
T Consensus        85 ~k~GyCE~C~~~y~~---l~~H~~s~~Hr~fa~  114 (144)
T 4f9c_B           85 KKKGYCECCLQKYED---LETHLLSEQHRNFAQ  114 (144)
T ss_dssp             ---CEETTTTEECSC---HHHHHHSHHHHHHHT
T ss_pred             CCCCCccchhhhhhh---HHHHcCCHHHHHHHh
Confidence            345699999999996   889999999986553

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.60  E-value=0.29  Score=28.86  Aligned_cols=22  Identities=23%  Similarity=0.200  Sum_probs=20.0

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2eou_A           12 TSECQECGKIFRHSSLLIEHQA   33 (44)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            5789999999999999999963

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.57  E-value=0.3  Score=29.10  Aligned_cols=22  Identities=27%  Similarity=0.523  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em8_A           12 PYKCVECGKGYKRRLDLDFHQR   33 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CeECcccCchhCCHHHHHHHHH
Confidence            5889999999999999999974

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=86.57  E-value=0.18  Score=31.16  Aligned_cols=20  Identities=30%  Similarity=0.805  Sum_probs=10.2

Q ss_pred             eeccccccccCCHHHHHHhh
Q 045121            3 WSCALCQVSTTSKRDLDEHL   22 (202)
Q Consensus         3 w~C~lC~vt~tse~~l~~Hl   22 (202)
                      |.|.+|...|.+...|..|+
T Consensus        30 ~~C~~C~~~f~~~~~l~~H~   49 (57)
T 1bbo_A           30 YHCTYCNFSFKTKGNLTKHM   49 (57)
T ss_dssp             EECSSSSCEESSHHHHHHHH
T ss_pred             ccCCCCCchhcCHHHHHHHH
Confidence            44555555555555555554

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.56  E-value=0.32  Score=27.19  Aligned_cols=23  Identities=22%  Similarity=0.179  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|...|.....|..|++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2els_A            8 KIFTCEYCNKVFKFKHSLQAHLR   30 (36)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCEECCCCCceeCCHHHHHHHHH
Confidence            45889999999999999999974

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=86.51  E-value=0.41  Score=25.78  Aligned_cols=22  Identities=23%  Similarity=0.525  Sum_probs=20.0

Q ss_pred             ceecc--ccccccCCHHHHHHhhc
Q 045121            2 DWSCA--LCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~--lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.  .|...|+....|..|..
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~   25 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKR   25 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHT
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHH
Confidence            57898  99999999999999974

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=86.47  E-value=0.37  Score=28.59  Aligned_cols=22  Identities=23%  Similarity=0.643  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|+..|.....|..|..
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2em0_A           12 TWKCRECDMCFSQASSLRLHQN   33 (46)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHGG
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            5789999999999999999974

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.44  E-value=0.35  Score=28.80  Aligned_cols=22  Identities=23%  Similarity=0.508  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emz_A           12 PFKCNECGKGFGRRSHLAGHLR   33 (46)
T ss_dssp             SCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            5889999999999999999974

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.43  E-value=0.31  Score=29.05  Aligned_cols=22  Identities=23%  Similarity=0.394  Sum_probs=20.1

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|+....|..|..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em4_A           12 PYECIECGKAFKTKSSLICHRR   33 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CcCCCCCCCccCCHHHHHHHHH
Confidence            5889999999999999999964

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=86.37  E-value=0.34  Score=30.11  Aligned_cols=22  Identities=27%  Similarity=0.631  Sum_probs=20.1

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        24 ~~~C~~C~k~f~~~~~L~~H~~   45 (54)
T 1yui_A           24 PATCPICYAVIRQSRNLRRHLE   45 (54)
T ss_dssp             CEECTTTCCEESSHHHHHHHHH
T ss_pred             CccCCCCCcccCCHHHHHHHHH
Confidence            5899999999999999999964

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.33  E-value=0.37  Score=28.39  Aligned_cols=22  Identities=18%  Similarity=0.446  Sum_probs=20.1

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|..
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~   31 (43)
T 2yrm_A           10 AFFCNECDCRFSEEASLKRHTL   31 (43)
T ss_dssp             CBCCSSSCCCBSSHHHHHHHHH
T ss_pred             CEECCCCCCeeCChHHHHHHHH
Confidence            5889999999999999999963

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=86.29  E-value=0.36  Score=29.16  Aligned_cols=22  Identities=18%  Similarity=0.369  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (48)
T 2epr_A           12 QVACEICGKIFRDVYHLNRHKL   33 (48)
T ss_dssp             SEEETTTTEEESSHHHHHHHGG
T ss_pred             CeeCCCCCcccCCHHHHHHHHH
Confidence            5899999999999999999974

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.26  E-value=0.36  Score=28.70  Aligned_cols=22  Identities=27%  Similarity=0.510  Sum_probs=20.1

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|+.+|.....|..|..
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eoo_A           12 PYGCNECGKNFGRHSHLIEHLK   33 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH
T ss_pred             CEEccccCcccCCHHHHHHHHH
Confidence            5899999999999999999963

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=86.14  E-value=0.37  Score=29.67  Aligned_cols=22  Identities=9%  Similarity=0.279  Sum_probs=19.5

Q ss_pred             eecccccccCCCHHHHHhhhcc
Q 045121          137 FWCEVFQVGTHSAVVMEGHKRG  158 (202)
Q Consensus       137 ~~Ce~C~v~~~se~~~~~Hl~G  158 (202)
                      |.|.+|+..|.+...|..|++-
T Consensus        30 ~~C~~C~~~f~~~~~l~~H~~~   51 (57)
T 1bbo_A           30 YHCTYCNFSFKTKGNLTKHMKS   51 (57)
T ss_dssp             EECSSSSCEESSHHHHHHHHHS
T ss_pred             ccCCCCCchhcCHHHHHHHHHH
Confidence            6899999999999999999853

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.14  E-value=0.38  Score=28.52  Aligned_cols=22  Identities=18%  Similarity=0.351  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emp_A           12 PYMCNECGKAFSVYSSLTTHQV   33 (46)
T ss_dssp             SEECSSSCCEESCHHHHHHHHH
T ss_pred             CeECCCCCchhCCHHHHHHHHH
Confidence            5899999999999999999973

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.11  E-value=0.33  Score=28.84  Aligned_cols=22  Identities=14%  Similarity=0.315  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2enc_A           12 PFKCEECGKGFYTNSQCYSHQR   33 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CcCCCCCCCcCCChHHHHHHHH
Confidence            5899999999999999999973

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.04  E-value=0.34  Score=27.17  Aligned_cols=23  Identities=13%  Similarity=0.303  Sum_probs=20.6

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|...|.....|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (37)
T 2elo_A            8 RSYSCPVCEKSFSEDRLIKSHIK   30 (37)
T ss_dssp             CCCEETTTTEECSSHHHHHHHHH
T ss_pred             CCcCCCCCCCccCCHHHHHHHHH
Confidence            35789999999999999999975

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.00  E-value=0.38  Score=28.55  Aligned_cols=22  Identities=23%  Similarity=0.563  Sum_probs=20.1

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|..+|.....|..|..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoq_A           12 PFKCDICGKSFCGRSRLNRHSM   33 (46)
T ss_dssp             SCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CcCCCcCCchhCCHHHHHHHHH
Confidence            5789999999999999999964

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.00  E-value=0.38  Score=28.52  Aligned_cols=22  Identities=23%  Similarity=0.486  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|+....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytk_A           12 PYKCNECGKVFTQNSHLTNHWR   33 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CEeCCcCCCccCCHHHHHHHHH
Confidence            5899999999999999999974

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=85.95  E-value=0.25  Score=29.45  Aligned_cols=22  Identities=18%  Similarity=0.475  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ely_A           12 PFKCVECGKGFSRRSALNVHHK   33 (46)
T ss_dssp             SBCCSSSCCCBSSTTHHHHHHH
T ss_pred             CcccCccCcccCCHHHHHHHHH
Confidence            5889999999999999999974

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.93  E-value=0.32  Score=28.87  Aligned_cols=22  Identities=23%  Similarity=0.466  Sum_probs=20.1

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|+....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2en6_A           12 PYGCNECGKTFSQKSILSAHQR   33 (46)
T ss_dssp             CEEETTTTEEESSHHHHHHHHH
T ss_pred             CeECCCCCcccCchHHHHHHHH
Confidence            5889999999999999999974

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=85.90  E-value=0.38  Score=26.80  Aligned_cols=22  Identities=14%  Similarity=0.125  Sum_probs=19.8

Q ss_pred             ceecccccccCCCHHHHHhhhc
Q 045121          136 EFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       136 ~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      .|-|.+|+..|.....|..|+.
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~   23 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHIT   23 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHH
T ss_pred             cccCCCCCchhCCHHHHHHHHH
Confidence            3679999999999999999974

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.81  E-value=0.31  Score=28.62  Aligned_cols=22  Identities=23%  Similarity=0.459  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2yu5_A           12 PFKCSKCDRVFTQRNYLVQHER   33 (44)
T ss_dssp             SEECSSSSCEESSSHHHHHHHH
T ss_pred             CeECCCCCchhCCHHHHHHHhH
Confidence            5899999999999999999974

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=85.72  E-value=0.34  Score=29.85  Aligned_cols=21  Identities=29%  Similarity=0.732  Sum_probs=12.8

Q ss_pred             ceeccccccccCCHHHHHHhh
Q 045121            2 DWSCALCQVSTTSKRDLDEHL   22 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl   22 (202)
                      +|.|.+|...|.....|..|+
T Consensus        32 ~~~C~~C~~~f~~~~~l~~H~   52 (57)
T 3uk3_C           32 PYKCEFCEYAAAQKTSLRYHL   52 (57)
T ss_dssp             CEECSSSSCEESSHHHHHHHH
T ss_pred             CcCCCCCcchhCCHHHHHHHH
Confidence            355666666666666666664

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=85.63  E-value=0.36  Score=26.15  Aligned_cols=22  Identities=27%  Similarity=0.501  Sum_probs=20.1

Q ss_pred             ceecc--ccccccCCHHHHHHhhc
Q 045121            2 DWSCA--LCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~--lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.  .|...|.....|..|+.
T Consensus         3 ~~~C~~~~C~k~f~~~~~L~~H~~   26 (32)
T 1zfd_A            3 PYSCDHPGCDKAFVRNHDLIRHKK   26 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHG
T ss_pred             CCcCcCCCCCCccCCHHHHHHHHH
Confidence            57899  89999999999999975

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=85.55  E-value=0.36  Score=29.75  Aligned_cols=21  Identities=29%  Similarity=0.433  Sum_probs=19.0

Q ss_pred             ceeccccccccCCHHHHHHhh
Q 045121            2 DWSCALCQVSTTSKRDLDEHL   22 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl   22 (202)
                      +|.|.+|...|.+...|..|.
T Consensus         4 ~~~C~~C~~~f~~~~~l~~H~   24 (57)
T 3uk3_C            4 SRECSYCGKFFRSNYYLNIHL   24 (57)
T ss_dssp             -CBCTTTCCBCSCHHHHHHHH
T ss_pred             CccCCCCcchhCChHHHHHHH
Confidence            589999999999999999996

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.40  E-value=0.45  Score=28.17  Aligned_cols=23  Identities=13%  Similarity=0.076  Sum_probs=20.8

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emg_A           11 NPFICSECGKVFTHKTNLIIHQK   33 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHT
T ss_pred             CCEECCccCcccCCHHHHHHHHH
Confidence            35889999999999999999975

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.36  E-value=0.25  Score=29.04  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=20.1

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|..
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (44)
T 2eox_A           12 SYNCNECGKAFTRIFHLTRHQK   33 (44)
T ss_dssp             CEEETTTTEEESSSHHHHTTHH
T ss_pred             CeECcccCcccCCHHHHHHHHH
Confidence            5899999999999999999963

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=85.36  E-value=0.36  Score=28.56  Aligned_cols=22  Identities=23%  Similarity=0.616  Sum_probs=20.1

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        10 ~~~C~~C~k~f~~~~~l~~H~~   31 (45)
T 2epq_A           10 PYSCPVCGLRFKRKDRMSYHVR   31 (45)
T ss_dssp             SSEETTTTEECSCHHHHHHHHH
T ss_pred             CCcCCCCCcccCCHHHHHHHHH
Confidence            5889999999999999999973

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=85.31  E-value=0.46  Score=24.71  Aligned_cols=22  Identities=27%  Similarity=0.552  Sum_probs=20.2

Q ss_pred             ceecc--ccccccCCHHHHHHhhc
Q 045121            2 DWSCA--LCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~--lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.  .|...|.....|..|..
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~   25 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKK   25 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHH
Confidence            57899  99999999999999974

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.27  E-value=0.45  Score=28.34  Aligned_cols=23  Identities=13%  Similarity=0.193  Sum_probs=20.9

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eon_A           11 KPYKCQVCGKAFRVSSHLVQHHS   33 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHTT
T ss_pred             cccCCCCCCcccCcHHHHHHHHH
Confidence            45889999999999999999985

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.25  E-value=0.35  Score=28.67  Aligned_cols=22  Identities=23%  Similarity=0.451  Sum_probs=20.1

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yu8_A           12 PYKCNECGKVFTQNSHLARHRR   33 (46)
T ss_dssp             SEECSSSCCEESSSHHHHHHTH
T ss_pred             CeECCcCCchhCCHHHHHHHHH
Confidence            5899999999999999999973

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=85.16  E-value=0.39  Score=29.98  Aligned_cols=22  Identities=18%  Similarity=0.591  Sum_probs=20.0

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.+...|..|..
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~   23 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYR   23 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHH
T ss_pred             cCcCCCCccccCCHHHHHHHHH
Confidence            6899999999999999999964

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.15  E-value=0.46  Score=27.41  Aligned_cols=23  Identities=9%  Similarity=0.132  Sum_probs=20.5

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.+...|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (42)
T 2yte_A            9 KPYSCAECKETFSDNNRLVQHQK   31 (42)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            35789999999999999999974

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=85.09  E-value=0.49  Score=27.05  Aligned_cols=23  Identities=22%  Similarity=0.341  Sum_probs=20.6

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.+...|..|++
T Consensus         5 k~~~C~~C~k~f~~~~~L~~H~~   27 (39)
T 1njq_A            5 RSYTCSFCKREFRSAQALGGHMN   27 (39)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHH
T ss_pred             CceECCCCCcccCCHHHHHHHHH
Confidence            35889999999999999999974

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.93  E-value=0.46  Score=28.15  Aligned_cols=22  Identities=23%  Similarity=0.202  Sum_probs=20.1

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yso_A           12 SHQCRECGEIFFQYVSLIEHQV   33 (46)
T ss_dssp             CEECTTTCCEESSHHHHHHHHH
T ss_pred             CEEccccChhhCCHHHHHHHHH
Confidence            5899999999999999999963

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.88  E-value=0.47  Score=27.54  Aligned_cols=23  Identities=17%  Similarity=0.294  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|++|+..|.+...|..|++
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2eos_A           10 KPYPCEICGTRFRHLQTLKSHLR   32 (42)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHTT
T ss_pred             CCEECCCCCCccCCHHHHHHHHH
Confidence            35789999999999999999975

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.81  E-value=0.46  Score=27.68  Aligned_cols=23  Identities=17%  Similarity=0.157  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|++|+..|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2en7_A           11 KPYVCNECGKAFRSKSYLIIHTR   33 (44)
T ss_dssp             SSSCCTTTCCCCSSHHHHHHHHT
T ss_pred             cCeECCCCCCccCCHHHHHHHhh
Confidence            35889999999999999999974

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.78  E-value=0.48  Score=28.15  Aligned_cols=23  Identities=17%  Similarity=0.208  Sum_probs=20.8

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|...|.+...|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2en9_A           11 KLFKCNECKKTFTQSSSLTVHQR   33 (46)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCEECCccCcccCCHHHHHHHHH
Confidence            45889999999999999999975

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.72  E-value=0.38  Score=28.44  Aligned_cols=22  Identities=23%  Similarity=0.285  Sum_probs=20.1

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|..
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2epw_A           12 PCKCTECGKAFCWKSQLIMHQR   33 (46)
T ss_dssp             SEECSSSCCEESSSHHHHHHHH
T ss_pred             CeeCCCCCCccCCHHHHHHHHH
Confidence            5899999999999999999973

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.67  E-value=0.43  Score=28.27  Aligned_cols=23  Identities=13%  Similarity=0.273  Sum_probs=20.8

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2em3_A           11 KPYECKVCSKAFTQKAHLAQHQK   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            45899999999999999999974

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=84.62  E-value=0.49  Score=27.37  Aligned_cols=23  Identities=13%  Similarity=0.157  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|++|+..|.+...|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (42)
T 2el5_A            9 NPYECSECGKAFNRKDQLISHQR   31 (42)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             CCccCCCcChhhCCHHHHHHHHH
Confidence            35889999999999999999974

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=84.57  E-value=0.34  Score=25.31  Aligned_cols=22  Identities=9%  Similarity=0.350  Sum_probs=19.6

Q ss_pred             ceecccccccCCCHHHHHhhhc
Q 045121          136 EFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       136 ~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      .|-|.+|...|.....|..|+.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIK   23 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHH
Confidence            3679999999999999999974

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=84.88  E-value=0.19  Score=26.57  Aligned_cols=22  Identities=18%  Similarity=0.226  Sum_probs=19.8

Q ss_pred             ceecccccccCCCHHHHHhhhc
Q 045121          136 EFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       136 ~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      .|.|.+|+..|.+...|..|.+
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVR   24 (30)
Confidence            4789999999999999999974

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=84.48  E-value=0.29  Score=25.35  Aligned_cols=22  Identities=14%  Similarity=0.172  Sum_probs=19.6

Q ss_pred             ceecccccccCCCHHHHHhhhc
Q 045121          136 EFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       136 ~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      .|.|..|...|.....|..|+.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~   23 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLK   23 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHH
T ss_pred             CCcCCCCCcccCCHHHHHHHHH
Confidence            3679999999999999999974

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.47  E-value=0.49  Score=27.27  Aligned_cols=23  Identities=13%  Similarity=0.117  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.+...|..|+.
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2ytb_A           10 KPYRCDQCGKAFSQKGSLIVHIR   32 (42)
T ss_dssp             CSBCCTTTTCCBSSHHHHHTTGG
T ss_pred             CCeeCCCccchhCCHHHHHHHHH
Confidence            35789999999999999999974

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=84.37  E-value=0.45  Score=29.12  Aligned_cols=23  Identities=9%  Similarity=0.099  Sum_probs=20.5

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|...|.....|..|++
T Consensus         6 kp~~C~~C~k~F~~~~~L~~H~~   28 (48)
T 3iuf_A            6 KPYACDICGKRYKNRPGLSYHYA   28 (48)
T ss_dssp             SCEECTTTCCEESSHHHHHHHHH
T ss_pred             cCEECCCcCcccCCHHHHHHHhh
Confidence            35889999999999999999874

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.35  E-value=0.52  Score=27.82  Aligned_cols=23  Identities=13%  Similarity=0.225  Sum_probs=20.9

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|...|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yts_A           11 KPYICNECGKSFIQKSHLNRHRR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGG
T ss_pred             cCEECCCCChhhCChHHHHHHHH
Confidence            45899999999999999999974

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.31  E-value=0.5  Score=27.85  Aligned_cols=23  Identities=13%  Similarity=0.088  Sum_probs=20.8

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|++|...|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (44)
T 2epv_A           11 KPYECNECGKAFIWKSLLIVHER   33 (44)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             cCeECCCCCcccCchHHHHHHHh
Confidence            45899999999999999999975

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.19  E-value=0.55  Score=27.78  Aligned_cols=23  Identities=9%  Similarity=0.053  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2enf_A           11 KPYKCNECGKVFTQNSHLVRHRG   33 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHT
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            45889999999999999999974

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=84.15  E-value=0.5  Score=30.04  Aligned_cols=21  Identities=24%  Similarity=0.613  Sum_probs=16.2

Q ss_pred             ceeccccccccCCHHHHHHhh
Q 045121            2 DWSCALCQVSTTSKRDLDEHL   22 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl   22 (202)
                      +|.|.+|...|++...|..|+
T Consensus        40 ~~~C~~C~k~f~~~~~L~~H~   60 (66)
T 2drp_A           40 VYPCPFCFKEFTRKDNMTAHV   60 (66)
T ss_dssp             CEECTTTCCEESCHHHHHHHH
T ss_pred             CeECCCCCCccCCHHHHHHHH
Confidence            467888888888888887776

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.09  E-value=0.55  Score=27.06  Aligned_cols=23  Identities=13%  Similarity=0.118  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|...|.....|..|++
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (41)
T 2ept_A            9 RVYECQECGKSFRQKGSLTLHER   31 (41)
T ss_dssp             CCEECSSSCCEESSHHHHHHHGG
T ss_pred             CCeECCCCCCCcCCHHHHHHHHH
Confidence            35889999999999999999974

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.09  E-value=0.48  Score=27.41  Aligned_cols=23  Identities=13%  Similarity=0.150  Sum_probs=20.8

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|++|+..|.....|..|++
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2en2_A           10 KPYKCETCGARFVQVAHLRAHVL   32 (42)
T ss_dssp             CSEECTTTCCEESSHHHHHHHTH
T ss_pred             CCEeCCCcChhhCCHHHHHHHHH
Confidence            35899999999999999999974

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=84.50  E-value=0.2  Score=26.48  Aligned_cols=22  Identities=18%  Similarity=0.182  Sum_probs=19.7

Q ss_pred             ceecccccccCCCHHHHHhhhc
Q 045121          136 EFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       136 ~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      .|-|++|...|.....|..|+.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVR   23 (29)
Confidence            3679999999999999999974

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=84.02  E-value=0.53  Score=29.34  Aligned_cols=22  Identities=27%  Similarity=0.549  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.+...|..|+.
T Consensus        30 ~~~C~~C~~~f~~~~~l~~H~~   51 (60)
T 2adr_A           30 PYPCGLCNRAFTRRDLLIRHAQ   51 (60)
T ss_dssp             SEECTTTCCEESSHHHHHHHHT
T ss_pred             CccCCCCCCccCCHHHHHHHHH
Confidence            5889999999999999999974

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.99  E-value=0.54  Score=27.73  Aligned_cols=23  Identities=13%  Similarity=0.112  Sum_probs=20.8

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep1_A           11 KPYECSDCGKSFIKKSQLHVHQR   33 (46)
T ss_dssp             CSSCCSSSCCCCSSHHHHHHHHG
T ss_pred             CCcCCCCCCchhCCHHHHHHHHH
Confidence            35889999999999999999985

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.95  E-value=0.64  Score=27.54  Aligned_cols=23  Identities=13%  Similarity=0.174  Sum_probs=20.9

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emf_A           11 KHFECTECGKAFTRKSTLSMHQK   33 (46)
T ss_dssp             CCEECSSSCCEESCHHHHHHHGG
T ss_pred             CCeECCCCCchhCCHHHHHHHHH
Confidence            45899999999999999999975

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.91  E-value=0.55  Score=27.71  Aligned_cols=23  Identities=9%  Similarity=0.049  Sum_probs=20.6

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|++|+..|.+...|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eov_A           11 KPYKCSDCGKSFTWKSRLRIHQK   33 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHH
T ss_pred             CCccCCccChhhCCHHHHHHHHH
Confidence            35889999999999999999974

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.82  E-value=0.55  Score=27.77  Aligned_cols=23  Identities=13%  Similarity=0.231  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq2_A           11 KPYQCNECGKAFSQTSKLARHQR   33 (46)
T ss_dssp             CSSSCCSSCCCCSSHHHHHHHGG
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            45889999999999999999974

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=83.79  E-value=0.52  Score=30.50  Aligned_cols=21  Identities=33%  Similarity=0.436  Sum_probs=19.5

Q ss_pred             ceeccccccccCCHHHHHHhh
Q 045121            2 DWSCALCQVSTTSKRDLDEHL   22 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl   22 (202)
                      +|.|.+|...|.+...|..|+
T Consensus         9 ~~~C~~C~k~f~~~~~L~~H~   29 (70)
T 1x5w_A            9 PEKCSECSYSCSSKAALRIHE   29 (70)
T ss_dssp             SEECSSSSCEESSHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHH
Confidence            589999999999999999995

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.77  E-value=0.58  Score=27.67  Aligned_cols=23  Identities=9%  Similarity=0.125  Sum_probs=20.8

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep3_A           11 KPYRCAECGKAFTDRSNLFTHQK   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCchhCCHHHHHHHHH
Confidence            45899999999999999999974

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.71  E-value=0.5  Score=27.51  Aligned_cols=23  Identities=17%  Similarity=0.216  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2eof_A           11 KPYECNECQKAFNTKSNLMVHQR   33 (44)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHhHHHHHHH
Confidence            45899999999999999999974

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.71  E-value=0.6  Score=27.67  Aligned_cols=23  Identities=22%  Similarity=0.283  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yth_A           11 KPFQCEECGKRFTQNSHLHSHQR   33 (46)
T ss_dssp             SSBCCSSSCCCBSSHHHHHHHGG
T ss_pred             cCCCCCCCCcccCCHHHHHHHHH
Confidence            35889999999999999999974

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.69  E-value=0.53  Score=27.76  Aligned_cols=23  Identities=13%  Similarity=0.206  Sum_probs=20.8

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.....|..|++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yrj_A           11 KPYRCGECGKAFAQKANLTQHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            45899999999999999999974

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=83.67  E-value=0.55  Score=30.45  Aligned_cols=22  Identities=18%  Similarity=0.588  Sum_probs=16.5

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        49 ~~~C~~C~~~f~~~~~l~~H~~   70 (73)
T 1f2i_G           49 PFQCRICMRNFSRSDHLTTHIR   70 (73)
T ss_dssp             CEECTTTCCEESCHHHHHHHHT
T ss_pred             CeECCCCCchhCCHHHHHHHHH
Confidence            4677888888888888877764

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.66  E-value=0.57  Score=27.71  Aligned_cols=23  Identities=17%  Similarity=0.206  Sum_probs=20.8

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|++|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2epz_A           11 KPFDCIDCGKAFSDHIGLNQHRR   33 (46)
T ss_dssp             CSBCCTTTCCCBSSHHHHHHHHT
T ss_pred             CCeECCCCCceeCCHHHHHHHHH
Confidence            45889999999999999999975

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.61  E-value=0.56  Score=27.74  Aligned_cols=23  Identities=13%  Similarity=0.160  Sum_probs=20.8

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|...|.....|..|++
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emi_A           11 RHYECSECGKAFIQKSTLSMHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHG
T ss_pred             CCCCCCCCCcccCCHHHHHHHHh
Confidence            45899999999999999999975

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.61  E-value=0.51  Score=27.84  Aligned_cols=23  Identities=17%  Similarity=0.239  Sum_probs=20.8

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|...|.....|..|++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eor_A           11 KPYNCEECGKAFIHDSQLQEHQR   33 (46)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHH
T ss_pred             cCccCCCCCCCcCCHHHHHHHHH
Confidence            45899999999999999999974

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=83.52  E-value=0.62  Score=26.79  Aligned_cols=23  Identities=13%  Similarity=0.180  Sum_probs=20.6

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|++|+..|.....|..|+.
T Consensus        10 ~~~~C~~C~k~f~~~~~l~~H~~   32 (42)
T 2epc_A           10 TPYLCGQCGKSFTQRGSLAVHQR   32 (42)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHhh
Confidence            45899999999999999999974

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.48  E-value=0.68  Score=27.43  Aligned_cols=23  Identities=17%  Similarity=0.293  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em6_A           11 KCYKCDVCGKEFSQSSHLQTHQR   33 (46)
T ss_dssp             CCCBCSSSCCBCSSHHHHHHHHT
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            45889999999999999999974

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.46  E-value=0.52  Score=27.97  Aligned_cols=23  Identities=9%  Similarity=0.059  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|...|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yto_A           11 KPYKCSDCGKAFTRKSGLHIHQQ   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCEECcccCCccCCHhHHHHHHH
Confidence            45899999999999999999974

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.39  E-value=0.58  Score=27.68  Aligned_cols=23  Identities=17%  Similarity=0.224  Sum_probs=20.9

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|++|+..|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eml_A           11 KPYECSVCGKAFSHRQSLSVHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             CCeeCCCcCCccCCHHHHHHHHH
Confidence            45899999999999999999975

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.20  E-value=0.67  Score=27.46  Aligned_cols=23  Identities=17%  Similarity=0.202  Sum_probs=20.9

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em5_A           11 KSHQCHECGRGFTLKSHLNQHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCcCCCccCCHHHHHHHHH
Confidence            45899999999999999999984

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.17  E-value=0.54  Score=27.72  Aligned_cols=23  Identities=22%  Similarity=0.224  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytf_A           11 KPFECSECQKAFNTKSNLIVHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcCCCCCCcccCCHHHHHHHHH
Confidence            45899999999999999999974

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.15  E-value=0.68  Score=27.35  Aligned_cols=23  Identities=9%  Similarity=0.117  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq1_A           11 KPYKCNECGKAFRAHSNLTTHQV   33 (46)
T ss_dssp             CCCCCTTTTCCCSSHHHHHHHHT
T ss_pred             CCeECCcCChhhCCHHHHHHHHH
Confidence            45889999999999999999975

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.11  E-value=0.57  Score=27.78  Aligned_cols=23  Identities=17%  Similarity=0.176  Sum_probs=20.5

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoh_A           11 KPYECKECRKTFIQIGHLNQHKR   33 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCcCCCCcCchhCCHHHHHHHHH
Confidence            35789999999999999999974

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.11  E-value=0.6  Score=27.51  Aligned_cols=23  Identities=13%  Similarity=0.212  Sum_probs=20.9

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eme_A           11 KPYVCDYCGKAFGLSAELVRHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             CCeECCCCChhhCCHHHHHHHHH
Confidence            45899999999999999999984

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=83.08  E-value=0.5  Score=30.84  Aligned_cols=21  Identities=19%  Similarity=0.423  Sum_probs=15.3

Q ss_pred             ceeccccccccCCHHHHHHhh
Q 045121            2 DWSCALCQVSTTSKRDLDEHL   22 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl   22 (202)
                      +|.|.+|...|.....|..|+
T Consensus        42 ~~~C~~C~~~f~~~~~L~~H~   62 (72)
T 1x6e_A           42 PYKCLECGKAFSQNSGLINHQ   62 (72)
T ss_dssp             CEECSSSCCEESSHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHH
Confidence            467777777777777777775

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.08  E-value=0.63  Score=27.24  Aligned_cols=23  Identities=13%  Similarity=0.157  Sum_probs=20.8

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2emb_A           11 KRYECSKCQATFNLRKHLIQHQK   33 (44)
T ss_dssp             SSEECTTTCCEESCHHHHHHHGG
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            35899999999999999999975

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=83.08  E-value=0.55  Score=27.86  Aligned_cols=23  Identities=17%  Similarity=0.200  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emj_A           11 KPFECAECGKSFSISSQLATHQR   33 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHH
T ss_pred             CCEECCCCCcccCCHHHHHHHHH
Confidence            45889999999999999999974

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.00  E-value=0.62  Score=27.46  Aligned_cols=23  Identities=9%  Similarity=0.110  Sum_probs=20.8

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq3_A           11 KPYECNQCGKAFSVRSSLTTHQA   33 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHT
T ss_pred             CCeECCCCChhhCCHHHHHHHHH
Confidence            45889999999999999999974

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.00  E-value=0.41  Score=26.89  Aligned_cols=23  Identities=9%  Similarity=-0.009  Sum_probs=20.4

Q ss_pred             cceecccccccCCCH-HHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSA-VVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se-~~~~~Hl~  157 (202)
                      ..|.|.+|...|... ..|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~~L~~H~~   31 (37)
T 2elp_A            8 RAMKCPYCDFYFMKNGSDLQRHIW   31 (37)
T ss_dssp             CCEECSSSSCEECSSCHHHHHHHH
T ss_pred             CCeECCCCChhhccCHHHHHHHHH
Confidence            358999999999999 99999974

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.95  E-value=0.58  Score=27.82  Aligned_cols=23  Identities=17%  Similarity=0.017  Sum_probs=20.6

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|...|.....|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eom_A           11 RGHRCSDCGKFFLQASNFIQHRR   33 (46)
T ss_dssp             SSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCcCCCCCCCeeCChHHHHHHHH
Confidence            35889999999999999999974

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.81  E-value=0.57  Score=27.70  Aligned_cols=23  Identities=13%  Similarity=0.166  Sum_probs=20.8

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emy_A           11 NPYECHECGKAFSRKYQLISHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             cCcCCCCCCcccCcHHHHHHHHH
Confidence            45899999999999999999974

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.81  E-value=0.52  Score=27.97  Aligned_cols=23  Identities=17%  Similarity=0.219  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|++|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoz_A           11 KPYSCNVCGKAFVLSAHLNQHLR   33 (46)
T ss_dssp             CSEEETTTTEEESSHHHHHHHHH
T ss_pred             CCeECcccChhhCCHHHHHHHHH
Confidence            45899999999999999999974

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.77  E-value=0.68  Score=27.25  Aligned_cols=23  Identities=13%  Similarity=-0.002  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.+...|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eop_A           11 KPHECRECGKSFSFNSQLIVHQR   33 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHT
T ss_pred             CCeeCCCCCchhCCHHHHHHHHH
Confidence            35889999999999999999975

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.74  E-value=0.52  Score=27.96  Aligned_cols=23  Identities=17%  Similarity=0.345  Sum_probs=20.8

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|...|.....|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2enh_A           11 KPYECDVCRKAFSHHASLTQHQR   33 (46)
T ss_dssp             SSCBCTTTCCBCSSSHHHHHHGG
T ss_pred             CCcCCCCcCchhCCHHHHHHHHH
Confidence            45889999999999999999975

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.66  E-value=0.58  Score=27.66  Aligned_cols=23  Identities=9%  Similarity=0.106  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|++|+..|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytj_A           11 KPYICAECGKAFTIRSNLIKHQK   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCeECCCCChhhCCHHHHHHHHH
Confidence            45899999999999999999974

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.65  E-value=0.75  Score=27.14  Aligned_cols=23  Identities=9%  Similarity=0.081  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|-|.+|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2ytn_A           11 KPYKCNECGKVFTQNSHLARHRG   33 (46)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHGG
T ss_pred             cCeECCCCCCeeCCHHHHHHHhh
Confidence            45889999999999999999974

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.64  E-value=0.61  Score=27.49  Aligned_cols=23  Identities=13%  Similarity=0.166  Sum_probs=20.8

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.+...|..|++
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eoe_A           11 KPYKCNECGKVFTQNSHLANHQR   33 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHG
T ss_pred             CCeECCCcChhhCCHHHHHHHHH
Confidence            45889999999999999999974

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.62  E-value=0.66  Score=27.32  Aligned_cols=23  Identities=9%  Similarity=0.109  Sum_probs=20.8

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eow_A           11 KPYKCNECGKAFRARSSLAIHQA   33 (46)
T ss_dssp             CCEECTTSCCEESSHHHHHHHHH
T ss_pred             CCeeccccCChhcCHHHHHHHHH
Confidence            45899999999999999999974

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.43  E-value=0.62  Score=27.17  Aligned_cols=23  Identities=9%  Similarity=0.019  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|-|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2eoj_A           11 NPYECCECGKVFSRKDQLVSHQK   33 (44)
T ss_dssp             CSCEETTTTEECSSHHHHHHHHT
T ss_pred             cCeeCCCCCCccCCHHHHHHHHH
Confidence            35889999999999999999975

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.37  E-value=0.58  Score=27.60  Aligned_cols=23  Identities=17%  Similarity=0.159  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|-|.+|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (45)
T 2epu_A           11 KPFECTHCGKSFRAKGNLVTHQR   33 (45)
T ss_dssp             CSEEETTTTEEESSHHHHHHHHT
T ss_pred             cCccCCCCCCccCChHHHHHHHH
Confidence            45889999999999999999975

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=82.35  E-value=0.52  Score=24.78  Aligned_cols=21  Identities=10%  Similarity=0.203  Sum_probs=18.9

Q ss_pred             ceecccccccCCCHHHHHhhh
Q 045121          136 EFWCEVFQVGTHSAVVMEGHK  156 (202)
Q Consensus       136 ~~~Ce~C~v~~~se~~~~~Hl  156 (202)
                      .|-|..|+..|.....|..|+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~   22 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHA   22 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHH
T ss_pred             CcCCcccCcccCChHHHHHHH
Confidence            367999999999999999994

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.26  E-value=0.69  Score=27.28  Aligned_cols=23  Identities=13%  Similarity=0.027  Sum_probs=20.8

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (47)
T 2epx_A           11 KPYECIECGKAFIQNTSLIRHWR   33 (47)
T ss_dssp             CSBCCSSSCCCBSSHHHHHHHHT
T ss_pred             CCEECCccCchhCChHHHHHHhH
Confidence            35889999999999999999975

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.24  E-value=0.72  Score=27.31  Aligned_cols=23  Identities=17%  Similarity=0.093  Sum_probs=20.8

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|++|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytq_A           11 KPYGCSECGKAFSSKSYLIIHMR   33 (46)
T ss_dssp             CSCBCSSSCCBCSCHHHHHHHHT
T ss_pred             CCcCCCccChhhCChHHHHHHHH
Confidence            35889999999999999999975

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=82.22  E-value=0.71  Score=27.18  Aligned_cols=23  Identities=13%  Similarity=0.079  Sum_probs=20.8

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2el4_A           11 KPYGCSQCAKTFSLKSQLIVHQR   33 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHGG
T ss_pred             CceECCCCCchhCCHHHHHHHHH
Confidence            45899999999999999999974

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.19  E-value=0.63  Score=27.59  Aligned_cols=23  Identities=9%  Similarity=0.047  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytt_A           11 KPYQCSECGKSFSGSYRLTQHWI   33 (46)
T ss_dssp             CTTCCSSSCCCCSSHHHHHHHHT
T ss_pred             CCeeCCCCCcccCCHHHHHHHHH
Confidence            45789999999999999999975

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.18  E-value=0.66  Score=27.42  Aligned_cols=23  Identities=17%  Similarity=0.307  Sum_probs=20.9

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|++|+..|.....|..|++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep0_A           11 KPYKCDVCHKSFRYGSSLTVHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeeCcccCcccCChHHHHHHHH
Confidence            45899999999999999999975

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=82.16  E-value=0.57  Score=30.30  Aligned_cols=22  Identities=23%  Similarity=0.694  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        37 ~~~C~~C~~~f~~~~~L~~H~~   58 (70)
T 1x5w_A           37 PFKCNYCSFDTKQPSNLSKHMK   58 (70)
T ss_dssp             SEECSSSSCEESSHHHHHHHHH
T ss_pred             CEeCCCCCCccCCHHHHHHHHH
Confidence            5899999999999999999973

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.14  E-value=0.66  Score=27.49  Aligned_cols=23  Identities=13%  Similarity=0.133  Sum_probs=20.9

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|...|.....|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2ytp_A           11 RHYECSECGKAFARKSTLIMHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCcCCcccCCHHHHHHHHH
Confidence            45889999999999999999975

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.13  E-value=0.63  Score=27.49  Aligned_cols=23  Identities=9%  Similarity=0.081  Sum_probs=20.6

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|...|.....|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2yti_A           11 KPYKCNECGKVFTQNSHLARHRG   33 (46)
T ss_dssp             CTTCCSSSCCCCSSHHHHHHHHT
T ss_pred             cCeECCCCCcccCChhHHHHHhH
Confidence            45789999999999999999974

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=82.12  E-value=0.88  Score=27.33  Aligned_cols=24  Identities=17%  Similarity=0.155  Sum_probs=21.5

Q ss_pred             CcceecccccccCCCHHHHHhhhc
Q 045121          134 NFEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       134 ~~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ...|.|.+|...|.....|..|++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (48)
T 2epr_A           10 RKQVACEICGKIFRDVYHLNRHKL   33 (48)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGG
T ss_pred             CcCeeCCCCCcccCCHHHHHHHHH
Confidence            346899999999999999999975

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=82.11  E-value=0.62  Score=29.59  Aligned_cols=21  Identities=19%  Similarity=0.493  Sum_probs=19.4

Q ss_pred             ceeccccccccCCHHHHHHhh
Q 045121            2 DWSCALCQVSTTSKRDLDEHL   22 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl   22 (202)
                      +|.|.+|...|.+...|..|.
T Consensus        10 ~~~C~~C~k~f~~~~~l~~H~   30 (66)
T 2drp_A           10 TYRCKVCSRVYTHISNFCRHY   30 (66)
T ss_dssp             EEECTTTCCEESSHHHHHHHH
T ss_pred             ceECCCCcchhCCHHHHHHHH
Confidence            589999999999999999985

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.11  E-value=0.63  Score=27.50  Aligned_cols=23  Identities=9%  Similarity=0.180  Sum_probs=20.9

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep2_A           11 KPYECSICGKSFTKKSQLHVHQQ   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCcCCCCCCcccCCHHHHHHHHH
Confidence            45899999999999999999974

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.09  E-value=0.69  Score=27.23  Aligned_cols=23  Identities=17%  Similarity=0.174  Sum_probs=20.5

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|++|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq4_A           11 KLYNCKECGKSFSRAPCLLKHER   33 (46)
T ss_dssp             CCCCBTTTTBCCSCHHHHHHHHH
T ss_pred             CCeECCCCCCccCchHHHHHHHH
Confidence            35889999999999999999974

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=82.09  E-value=0.84  Score=26.92  Aligned_cols=23  Identities=13%  Similarity=0.164  Sum_probs=20.8

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|++|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2em0_A           11 KTWKCRECDMCFSQASSLRLHQN   33 (46)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHGG
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            45889999999999999999975

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.06  E-value=0.63  Score=27.58  Aligned_cols=23  Identities=17%  Similarity=0.273  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|...|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em2_A           11 KPFKCKECGKAFRQNIHLASHLR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCEECCcCCchhCCHHHHHHHHH
Confidence            45899999999999999999974

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.05  E-value=0.66  Score=27.41  Aligned_cols=23  Identities=22%  Similarity=0.278  Sum_probs=20.8

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|++|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2en1_A           11 KPFKCEECGKRFTQNSQLHSHQR   33 (46)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGG
T ss_pred             CCeeCCCCCcccCCHHHHHHHHH
Confidence            45899999999999999999984

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.02  E-value=0.81  Score=27.07  Aligned_cols=23  Identities=22%  Similarity=0.369  Sum_probs=20.8

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2elz_A           11 KPYKCEDCGKGYNRRLNLDMHQR   33 (46)
T ss_dssp             SSCBCSSSCCBCSSHHHHHHHGG
T ss_pred             CCeeCcccCchhCCHHHHHHHHH
Confidence            35889999999999999999975

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.01  E-value=0.67  Score=27.47  Aligned_cols=23  Identities=26%  Similarity=0.349  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|...|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emz_A           11 RPFKCNECGKGFGRRSHLAGHLR   33 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            35889999999999999999974

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.96  E-value=0.72  Score=27.22  Aligned_cols=23  Identities=17%  Similarity=0.121  Sum_probs=20.9

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|++|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em7_A           11 KPYKCEECGKGFICRRDLYTHHM   33 (46)
T ss_dssp             CSEECSSSCCEESCHHHHHHHGG
T ss_pred             cCccCCCccchhCCHHHHHHHHH
Confidence            45899999999999999999975

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=81.95  E-value=0.69  Score=28.69  Aligned_cols=21  Identities=19%  Similarity=0.521  Sum_probs=19.8

Q ss_pred             ceeccccccccCCHHHHHHhh
Q 045121            2 DWSCALCQVSTTSKRDLDEHL   22 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl   22 (202)
                      +|.|.+|...|.....|..|+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~   32 (54)
T 2eps_A           12 PYICQSCGKGFSRPDHLNGHI   32 (54)
T ss_dssp             CEECSSSCCEESSHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHH
Confidence            689999999999999999997

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.88  E-value=0.77  Score=27.09  Aligned_cols=23  Identities=13%  Similarity=0.169  Sum_probs=20.9

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ene_A           11 KPYKCNECGKVFRHNSYLSRHQR   33 (46)
T ss_dssp             SSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCchhCChHHHHHHHh
Confidence            45899999999999999999975

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.84  E-value=0.65  Score=27.52  Aligned_cols=23  Identities=13%  Similarity=0.147  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|...|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em4_A           11 RPYECIECGKAFKTKSSLICHRR   33 (46)
T ss_dssp             SSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCcCCCCCCCccCCHHHHHHHHH
Confidence            35889999999999999999974

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.83  E-value=0.46  Score=28.13  Aligned_cols=23  Identities=17%  Similarity=0.180  Sum_probs=20.6

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2en3_A           11 KPFQCKECGMNFSWSCSLFKHLR   33 (46)
T ss_dssp             CSEECSSSCCEESSSHHHHHHHH
T ss_pred             CCeeCcccChhhCCHHHHHHHHH
Confidence            45889999999999999999973

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.83  E-value=0.67  Score=27.53  Aligned_cols=23  Identities=13%  Similarity=0.107  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytm_A           11 KPYKCMECGKAFGDNSSCTQHQR   33 (46)
T ss_dssp             CSSSBTTTTBCCSSHHHHHHHHH
T ss_pred             CCcCCCCCCchhCCHHHHHHHHH
Confidence            35789999999999999999974

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.73  E-value=0.7  Score=27.30  Aligned_cols=23  Identities=13%  Similarity=0.209  Sum_probs=20.6

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|++|+..|.+...|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoq_A           11 KPFKCDICGKSFCGRSRLNRHSM   33 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCcCCCcCCchhCCHHHHHHHHH
Confidence            35889999999999999999974

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.64  E-value=0.61  Score=30.74  Aligned_cols=21  Identities=24%  Similarity=0.555  Sum_probs=19.7

Q ss_pred             ceeccccccccCCHHHHHHhh
Q 045121            2 DWSCALCQVSTTSKRDLDEHL   22 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl   22 (202)
                      +|.|.+|...|.....|..|+
T Consensus         7 ~~~C~~C~k~f~~~~~L~~H~   27 (78)
T 2d9h_A            7 GLQCEICGFTCRQKASLNWHQ   27 (78)
T ss_dssp             CEECSSSCCEESSHHHHHHHH
T ss_pred             CeECCCCCCeeCCHHHHHHHH
Confidence            689999999999999999996

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.62  E-value=0.72  Score=27.06  Aligned_cols=23  Identities=13%  Similarity=0.274  Sum_probs=20.5

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|++|+..|.....|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (43)
T 2yrm_A            9 GAFFCNECDCRFSEEASLKRHTL   31 (43)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHHH
T ss_pred             CCEECCCCCCeeCChHHHHHHHH
Confidence            35789999999999999999974

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.61  E-value=0.68  Score=27.07  Aligned_cols=23  Identities=17%  Similarity=0.199  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.+...|..|++
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (44)
T 2emx_A            9 KPFGCSCCEKAFSSKSYLLVHQQ   31 (44)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHH
T ss_pred             cCccCCCCCcccCCHHHHHHHHH
Confidence            35899999999999999999974

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.52  E-value=0.68  Score=27.26  Aligned_cols=23  Identities=13%  Similarity=0.095  Sum_probs=20.8

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emm_A           11 RPHKCNECGKSFIQSAHLIQHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeeCCCCChhhCCHHHHHHHHH
Confidence            45899999999999999999974

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.52  E-value=0.81  Score=26.79  Aligned_cols=23  Identities=9%  Similarity=0.005  Sum_probs=20.5

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|++|...|.....|..|++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2eou_A           11 TTSECQECGKIFRHSSLLIEHQA   33 (44)
T ss_dssp             CCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            45889999999999999999974

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.52  E-value=0.85  Score=26.90  Aligned_cols=23  Identities=9%  Similarity=0.046  Sum_probs=21.0

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eq0_A           11 KPYKCHECGKVFRRNSHLARHQL   33 (46)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCchhCCHHHHHHHHH
Confidence            45899999999999999999975

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=81.49  E-value=0.71  Score=30.39  Aligned_cols=21  Identities=19%  Similarity=0.604  Sum_probs=19.7

Q ss_pred             ceeccccccccCCHHHHHHhh
Q 045121            2 DWSCALCQVSTTSKRDLDEHL   22 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl   22 (202)
                      +|.|.+|...|.....|..|+
T Consensus        15 ~~~C~~C~k~f~~~~~L~~H~   35 (77)
T 2ct1_A           15 PYECYICHARFTQSGTMKMHI   35 (77)
T ss_dssp             SEECTTTCCEESCHHHHHHHH
T ss_pred             CeECCCcCchhCCHHHHHHHH
Confidence            589999999999999999996

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=81.48  E-value=0.71  Score=26.17  Aligned_cols=22  Identities=23%  Similarity=0.475  Sum_probs=19.7

Q ss_pred             ceeccc--cccccCCHHHHHHhhc
Q 045121            2 DWSCAL--CQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~l--C~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+  |...|+....|..|..
T Consensus         8 ~~~C~~~~C~k~f~~~~~L~~H~~   31 (37)
T 1va1_A            8 QHICHIQGCGKVYGKTSHLRAHLR   31 (37)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHH
T ss_pred             CCCCCCCCCCCccCCHHHHHHHHH
Confidence            578996  9999999999999974

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=81.45  E-value=0.9  Score=26.86  Aligned_cols=23  Identities=13%  Similarity=0.183  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emk_A           11 KPYECKECGKAFSQTTHLIQHQR   33 (46)
T ss_dssp             CSCBCSSSCCBCSCHHHHHHHHH
T ss_pred             CceECCCCCchhCCHHHHHHHHH
Confidence            45889999999999999999974

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.45  E-value=0.69  Score=27.31  Aligned_cols=23  Identities=13%  Similarity=0.216  Sum_probs=20.8

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emh_A           11 RPYICTVCGKAFTDRSNLIKHQK   33 (46)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHH
T ss_pred             CCcCCCCCCchhCCHHHHHHHHH
Confidence            45899999999999999999974

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=81.41  E-value=0.76  Score=30.40  Aligned_cols=21  Identities=24%  Similarity=0.545  Sum_probs=16.7

Q ss_pred             ceeccccccccCCHHHHHHhh
Q 045121            2 DWSCALCQVSTTSKRDLDEHL   22 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl   22 (202)
                      +|.|.+|+.+|+....|..|+
T Consensus        32 p~~C~~C~k~F~~~~~L~~H~   52 (60)
T 4gzn_C           32 PRSCPECGKCFRDQSEVNRHL   52 (60)
T ss_dssp             CEECTTTCCEESSHHHHHHHG
T ss_pred             CeECCCCCCCcCCHHHHHHHh
Confidence            577888888888888888886

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=81.39  E-value=0.68  Score=28.67  Aligned_cols=23  Identities=9%  Similarity=0.047  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.+...|..|+.
T Consensus        23 k~~~C~~C~k~f~~~~~L~~H~~   45 (54)
T 1yui_A           23 QPATCPICYAVIRQSRNLRRHLE   45 (54)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCccCCCCCcccCCHHHHHHHHH
Confidence            45899999999999999999974

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=81.38  E-value=0.76  Score=30.27  Aligned_cols=21  Identities=19%  Similarity=0.407  Sum_probs=16.4

Q ss_pred             ceeccccccccCCHHHHHHhh
Q 045121            2 DWSCALCQVSTTSKRDLDEHL   22 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl   22 (202)
                      +|.|.+|...|.....|..|+
T Consensus        46 ~~~C~~C~~~f~~~~~L~~H~   66 (77)
T 2cot_A           46 PYKCDECGKAFIQRSHLIGHH   66 (77)
T ss_dssp             SEECSSSCCEESSHHHHHHHG
T ss_pred             CeeCCCCCCccCCHHHHHHHH
Confidence            467888888888888888876

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=81.36  E-value=0.64  Score=30.32  Aligned_cols=21  Identities=19%  Similarity=0.396  Sum_probs=19.7

Q ss_pred             ceeccccccccCCHHHHHHhh
Q 045121            2 DWSCALCQVSTTSKRDLDEHL   22 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl   22 (202)
                      +|.|.+|...|.....|..|+
T Consensus        14 ~~~C~~C~k~f~~~~~L~~H~   34 (72)
T 1x6e_A           14 PYGCVECGKAFSRSSILVQHQ   34 (72)
T ss_dssp             CEECSSSCCEESSHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHH
Confidence            589999999999999999996

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=81.30  E-value=0.64  Score=30.78  Aligned_cols=21  Identities=19%  Similarity=0.480  Sum_probs=19.5

Q ss_pred             ceeccccccccCCHHHHHHhh
Q 045121            2 DWSCALCQVSTTSKRDLDEHL   22 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl   22 (202)
                      +|.|.+|+.+|+....|..|.
T Consensus         4 py~C~~C~k~F~~~~~L~~H~   24 (60)
T 4gzn_C            4 PFFCNFCGKTYRDASGLSRHR   24 (60)
T ss_dssp             CEECTTTCCEESSHHHHHHHH
T ss_pred             CccCCCCCCEeCCHHHHHHHH
Confidence            689999999999999999994

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.28  E-value=0.79  Score=27.04  Aligned_cols=23  Identities=13%  Similarity=0.092  Sum_probs=20.9

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.....|..|++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytk_A           11 KPYKCNECGKVFTQNSHLTNHWR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCEeCCcCCCccCCHHHHHHHHH
Confidence            45899999999999999999974

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=81.23  E-value=0.81  Score=26.91  Aligned_cols=23  Identities=17%  Similarity=0.190  Sum_probs=20.9

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em9_A           11 KPYNCKECGKSFRWASCLLKHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGG
T ss_pred             cCeECCccccccCChHHHHHHHH
Confidence            45899999999999999999974

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.21  E-value=0.72  Score=27.15  Aligned_cols=23  Identities=13%  Similarity=0.219  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytr_A           11 KPYKCNECGKAFSQTSKLARHQR   33 (46)
T ss_dssp             CTTCCTTTCCCCSSHHHHHHHHT
T ss_pred             cCcCCCCCCCccCCHHHHHHHHH
Confidence            35789999999999999999975

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.12  E-value=0.72  Score=27.33  Aligned_cols=23  Identities=17%  Similarity=0.261  Sum_probs=20.9

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|...|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em8_A           11 KPYKCVECGKGYKRRLDLDFHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeECcccCchhCCHHHHHHHHH
Confidence            45899999999999999999975

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=81.12  E-value=0.73  Score=30.74  Aligned_cols=22  Identities=14%  Similarity=0.475  Sum_probs=17.4

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.+...|..|+.
T Consensus        62 ~~~C~~C~~~f~~~~~l~~H~~   83 (90)
T 1a1h_A           62 PFACDICGRKFARSDERKRHTK   83 (90)
T ss_dssp             CEECTTTCCEESSHHHHHHHHG
T ss_pred             CccCCCCCchhCCHHHHHHHHH
Confidence            4778888888888888888874

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.94  E-value=0.73  Score=27.28  Aligned_cols=23  Identities=9%  Similarity=0.047  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eoo_A           11 RPYGCNECGKNFGRHSHLIEHLK   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCEEccccCcccCCHHHHHHHHH
Confidence            45899999999999999999974

>4f9c_B Protein DBF4 homolog A; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_B* 4f9b_B* 4f9a_B*

Probab=80.94  E-value=0.54  Score=37.21  Aligned_cols=26  Identities=23%  Similarity=0.433  Sum_probs=22.8

Q ss_pred             eeccccccccCCHHHHHHhhcCcchHHHH
Q 045121            3 WSCALCQVSTTSKRDLDEHLHGKKHKARK   31 (202)
Q Consensus         3 w~C~lC~vt~tse~~l~~Hl~GkkHk~~~   31 (202)
                      -+|++|.+.+..   |..|+...+|+.-+
T Consensus        88 GyCE~C~~~y~~---l~~H~~s~~Hr~fa  113 (144)
T 4f9c_B           88 GYCECCLQKYED---LETHLLSEQHRNFA  113 (144)
T ss_dssp             CEETTTTEECSC---HHHHHHSHHHHHHH
T ss_pred             CCccchhhhhhh---HHHHcCCHHHHHHH
Confidence            589999999985   88999999998654

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=80.86  E-value=0.68  Score=30.27  Aligned_cols=23  Identities=17%  Similarity=0.172  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.+...|..|++
T Consensus        56 ~~~~C~~C~~~f~~~~~l~~H~~   78 (82)
T 2kmk_A           56 KPHKCQVCGKAFSQSSNLITHSR   78 (82)
T ss_dssp             CCEECTTTSCEESSHHHHHHHHH
T ss_pred             CCCcCCCcchhhCChHHHHHHHH
Confidence            35899999999999999999974

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=80.83  E-value=0.82  Score=27.06  Aligned_cols=23  Identities=13%  Similarity=0.206  Sum_probs=20.8

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|++|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2el6_A           11 NPYKCSQCEKSFSGKLRLLVHQR   33 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHG
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            45899999999999999999975

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=80.82  E-value=0.88  Score=26.82  Aligned_cols=23  Identities=9%  Similarity=0.135  Sum_probs=20.9

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ema_A           11 KRYKCNECGKVFSRNSQLSQHQK   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             cCcCCCCCcchhCCHHHHHHHHH
Confidence            45899999999999999999975

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.77  E-value=0.75  Score=27.15  Aligned_cols=23  Identities=26%  Similarity=0.281  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|.+|...|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2enc_A           11 KPFKCEECGKGFYTNSQCYSHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcCCCCCCCcCCChHHHHHHHH
Confidence            35899999999999999999974

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.75  E-value=0.71  Score=27.25  Aligned_cols=23  Identities=22%  Similarity=0.371  Sum_probs=20.9

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|++|...|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ysp_A           11 KPYKCEKCGKGYNSKFNLDMHQK   33 (46)
T ss_dssp             CSEEETTTTEEESCHHHHHHHHT
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            45899999999999999999975

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.74  E-value=0.75  Score=27.14  Aligned_cols=23  Identities=17%  Similarity=0.316  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytd_A           11 KPYKCSECGKAFHRHTHLNEHRR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCeECCCCCCeeCChHHHHHHHH
Confidence            45899999999999999999974

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.71  E-value=0.77  Score=30.22  Aligned_cols=22  Identities=14%  Similarity=0.430  Sum_probs=20.1

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      .|.|.+|...|.....|..|+.
T Consensus        38 ~~~C~~C~k~f~~~~~L~~H~~   59 (78)
T 2d9h_A           38 RFPCEFCGKRFEKPDSVAAHRS   59 (78)
T ss_dssp             CEECTTTCCEESSHHHHHHHHH
T ss_pred             ccCCCCCCchhCCHHHHHHHHH
Confidence            5899999999999999999973

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=80.68  E-value=0.76  Score=27.63  Aligned_cols=22  Identities=23%  Similarity=0.400  Sum_probs=20.4

Q ss_pred             cceecccccccCCCHHHHHhhh
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHK  156 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl  156 (202)
                      ..|.|..|...|.+...|..|.
T Consensus         7 kp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            7 ARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCCEETTTTEECSCHHHHHHHH
T ss_pred             cCeECCCCCCccCCHhHccCcC
Confidence            4589999999999999999997

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=80.55  E-value=0.78  Score=29.95  Aligned_cols=21  Identities=33%  Similarity=0.586  Sum_probs=19.5

Q ss_pred             ceeccccccccCCHHHHHHhh
Q 045121            2 DWSCALCQVSTTSKRDLDEHL   22 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl   22 (202)
                      .|.|.+|...|.+...|..|+
T Consensus        17 ~~~C~~C~k~f~~~~~l~~H~   37 (74)
T 2lce_A           17 PYKCDRCQASFRYKGNLASHK   37 (74)
T ss_dssp             SBCCTTSSCCBSCHHHHHHHH
T ss_pred             CeECCCCCceeCCHHHHHHHH
Confidence            589999999999999999996

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.44  E-value=0.78  Score=27.69  Aligned_cols=22  Identities=36%  Similarity=0.605  Sum_probs=19.8

Q ss_pred             ceeccc--cccccCCHHHHHHhhc
Q 045121            2 DWSCAL--CQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~l--C~vt~tse~~l~~Hl~   23 (202)
                      +|.|..  |..+|+....|..|+.
T Consensus         9 p~~C~~~~C~k~F~~~~~L~~H~r   32 (38)
T 2eln_A            9 LLKCPTDGCDYSTPDKYKLQAHLK   32 (38)
T ss_dssp             CEECSSSSCCCEESCHHHHHHHHH
T ss_pred             CCCCCCCCCCCccCCHHHHHHHHH
Confidence            688986  9999999999999973

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=80.42  E-value=1  Score=24.08  Aligned_cols=22  Identities=23%  Similarity=0.339  Sum_probs=19.5

Q ss_pred             ceecc--cccccCCCHHHHHhhhc
Q 045121          136 EFWCE--VFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       136 ~~~Ce--~C~v~~~se~~~~~Hl~  157 (202)
                      .|.|.  .|+..|.....|..|++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~   25 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKR   25 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHT
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHH
Confidence            36797  99999999999999974

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.33  E-value=0.84  Score=26.84  Aligned_cols=23  Identities=13%  Similarity=0.094  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      ..|.|++|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2en8_A           11 KSHTCDECGKNFCYISALRIHQR   33 (46)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHT
T ss_pred             CCeECCCcCcccCCHHHHHHHHH
Confidence            45889999999999999999974

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=80.18  E-value=0.88  Score=27.86  Aligned_cols=20  Identities=30%  Similarity=0.526  Sum_probs=19.1

Q ss_pred             eeccccccccCCHHHHHHhh
Q 045121            3 WSCALCQVSTTSKRDLDEHL   22 (202)
Q Consensus         3 w~C~lC~vt~tse~~l~~Hl   22 (202)
                      +.|++|.+.+++...|..|.
T Consensus         6 FiCP~C~~~l~s~~~L~~Hy   25 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHY   25 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHH
T ss_pred             cCCcHHHHHcCCHHHHHHHH
Confidence            68999999999999999997

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=80.13  E-value=0.9  Score=23.49  Aligned_cols=22  Identities=14%  Similarity=0.255  Sum_probs=19.8

Q ss_pred             ceecc--cccccCCCHHHHHhhhc
Q 045121          136 EFWCE--VFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       136 ~~~Ce--~C~v~~~se~~~~~Hl~  157 (202)
                      .|.|.  .|+..|.....|..|++
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~   25 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKK   25 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHH
Confidence            36899  99999999999999974

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=80.02  E-value=0.92  Score=29.84  Aligned_cols=22  Identities=27%  Similarity=0.563  Sum_probs=19.9

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|...|.....|..|+.
T Consensus        18 ~~~C~~C~~~f~~~~~l~~H~~   39 (77)
T 2cot_A           18 RYKCDECGKSFSHSSDLSKHRR   39 (77)
T ss_dssp             SSBCSSSCCBCSCHHHHHHHHT
T ss_pred             CEECCCCCcccCCHHHHHHHHH
Confidence            5789999999999999999963

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.01  E-value=0.65  Score=26.35  Aligned_cols=22  Identities=9%  Similarity=0.324  Sum_probs=19.8

Q ss_pred             cceecccccccCCCHHHHHhh-h
Q 045121          135 FEFWCEVFQVGTHSAVVMEGH-K  156 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~H-l  156 (202)
                      ..|-|+.|...|.....|..| .
T Consensus         8 k~~~C~~C~k~f~~~~~L~~H~~   30 (37)
T 2elm_A            8 HLYYCSQCHYSSITKNCLKRHVI   30 (37)
T ss_dssp             CEEECSSSSCEEECHHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            358899999999999999999 5

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	98.44
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	98.16
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	97.71
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	97.61
d2vrda1	61	Spliceosomal protein U1C {Human (Homo sapiens) [Ta	96.71
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	96.57
d2vrda1	61	Spliceosomal protein U1C {Human (Homo sapiens) [Ta	95.34
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	95.08
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	93.37
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	92.11
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	92.08
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	91.91
d1fu9a_	36	U-shaped transcription factor, different fingers {	91.73
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	90.97
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	90.68
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	90.62
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	90.41
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	89.92
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	89.32
d1y0jb1	36	U-shaped transcription factor, different fingers {	89.06
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	88.69
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	88.57
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	88.34
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	88.2
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	87.79
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	87.63
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	87.42
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	87.42
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	87.25
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	86.69
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	86.67
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	86.36
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	84.79
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	83.41
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	83.01
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	81.88
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	81.41
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	81.17
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	80.13

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.44  E-value=4.7e-08  Score=65.20  Aligned_cols=32  Identities=31%  Similarity=0.395  Sum_probs=30.4

Q ss_pred             ecccccccCCCHHHHHhhhcchhHHHHhhhhh
Q 045121          138 WCEVFQVGTHSAVVMEGHKRGKKHMARSNGSR  169 (202)
Q Consensus       138 ~Ce~C~v~~~se~~~~~Hl~GkKH~~k~~~~~  169 (202)
                      +|.|||++|+|..+.++|+.||+|.++|+...
T Consensus        23 ~C~lCn~~Fns~~~AqsHY~GK~H~K~lk~~~   54 (55)
T d1zu1a2          23 CCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE   54 (55)
T ss_dssp             EETTTTEECSSHHHHHHHHTSHHHHHHHHHHH
T ss_pred             hhhhhhcccCCHHHHHHHhhhhHHHHHHHHhc
Confidence            89999999999999999999999999998754

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=5e-07  Score=62.45  Aligned_cols=37  Identities=16%  Similarity=0.043  Sum_probs=34.8

Q ss_pred             CcceecccccccCCCHHHHHhhhcchhHHHHhhhhhh
Q 045121          134 NFEFWCEVFQVGTHSAVVMEGHKRGKKHMARSNGSRK  170 (202)
Q Consensus       134 ~~~~~Ce~C~v~~~se~~~~~Hl~GkKH~~k~~~~~~  170 (202)
                      ...|||.+|+..|.|+..|..|+++|+|+++|+.+++
T Consensus        13 ~gqfYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L~~   49 (67)
T d1zr9a1          13 GGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   49 (67)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             CCEEecccccCccCCHHHHHHHHcccHHHHHHHHhcc
Confidence            4679999999999999999999999999999999974

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=97.71  E-value=1e-05  Score=53.64  Aligned_cols=31  Identities=23%  Similarity=0.402  Sum_probs=28.6

Q ss_pred             eeccccccccCCHHHHHHhhcCcchHHHHHH
Q 045121            3 WSCALCQVSTTSKRDLDEHLHGKKHKARKKD   33 (202)
Q Consensus         3 w~C~lC~vt~tse~~l~~Hl~GkkHk~~~e~   33 (202)
                      -+|.||.++|+|...-++|+.||+|..++..
T Consensus        22 k~C~lCn~~Fns~~~AqsHY~GK~H~K~lk~   52 (55)
T d1zu1a2          22 KCCPVCNMTFSSPVVAESHYIGKTHIKNLRL   52 (55)
T ss_dssp             TEETTTTEECSSHHHHHHHHTSHHHHHHHHH
T ss_pred             hhhhhhhcccCCHHHHHHHhhhhHHHHHHHH
Confidence            3899999999999999999999999998753

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=1.3e-05  Score=55.11  Aligned_cols=35  Identities=26%  Similarity=0.381  Sum_probs=33.0

Q ss_pred             ceeccccccccCCHHHHHHhhcCcchHHHHHHHHH
Q 045121            2 DWSCALCQVSTTSKRDLDEHLHGKKHKARKKDYLE   36 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~GkkHk~~~e~l~~   36 (202)
                      .|+|-+|...|.++..|.+|..+|+|+..+.+|+.
T Consensus        15 qfYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L~~   49 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   49 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             EEecccccCccCCHHHHHHHHcccHHHHHHHHhcc
Confidence            58999999999999999999999999999998865

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.00045  Score=46.43  Aligned_cols=35  Identities=23%  Similarity=0.395  Sum_probs=29.5

Q ss_pred             ceecccccccCC--CHHHHHhhhcchhHHHHhhhhhh
Q 045121          136 EFWCEVFQVGTH--SAVVMEGHKRGKKHMARSNGSRK  170 (202)
Q Consensus       136 ~~~Ce~C~v~~~--se~~~~~Hl~GkKH~~k~~~~~~  170 (202)
                      .+||+.|++.++  |..+=..|++|++|+.+++..=+
T Consensus         3 ryyCdYC~~~lt~ds~s~RK~H~~G~kH~~n~~~yy~   39 (61)
T d2vrda1           3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQ   39 (61)
T ss_dssp             SCEETTTTEECSCCSHHHHHHHTCCTHHHHHHHHHTS
T ss_pred             chhhhhhcchhccCChhHHHHHhccHHHHHHHHHHHH
Confidence            589999999995  46667899999999999986543

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=96.57  E-value=0.00059  Score=46.88  Aligned_cols=33  Identities=18%  Similarity=0.188  Sum_probs=30.6

Q ss_pred             ceecccccccCCCHHHHHhhhcchhHHHHhhhh
Q 045121          136 EFWCEVFQVGTHSAVVMEGHKRGKKHMARSNGS  168 (202)
Q Consensus       136 ~~~Ce~C~v~~~se~~~~~Hl~GkKH~~k~~~~  168 (202)
                      ..+|.+|++...|++.-.+|..||||..+|+..
T Consensus        32 d~~CkvC~a~L~seSQriaHYeskkHa~kvr~y   64 (72)
T d1zu1a1          32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRY   64 (72)
T ss_dssp             SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHH
T ss_pred             hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            458999999999999999999999999999864

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.0049  Score=41.12  Aligned_cols=34  Identities=35%  Similarity=0.609  Sum_probs=28.3

Q ss_pred             ceeccccccccC--CHHHHHHhhcCcchHHHHHHHH
Q 045121            2 DWSCALCQVSTT--SKRDLDEHLHGKKHKARKKDYL   35 (202)
Q Consensus         2 ~w~C~lC~vt~t--se~~l~~Hl~GkkHk~~~e~l~   35 (202)
                      .++|+-|++-+|  |...-..|+.|++|+.++...=
T Consensus         3 ryyCdYC~~~lt~ds~s~RK~H~~G~kH~~n~~~yy   38 (61)
T d2vrda1           3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYY   38 (61)
T ss_dssp             SCEETTTTEECSCCSHHHHHHHTCCTHHHHHHHHHT
T ss_pred             chhhhhhcchhccCChhHHHHHhccHHHHHHHHHHH
Confidence            479999999997  4566789999999999987543

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=95.08  E-value=0.006  Score=41.72  Aligned_cols=35  Identities=23%  Similarity=0.515  Sum_probs=31.5

Q ss_pred             ceeccccccccCCHHHHHHhhcCcchHHHHHHHHH
Q 045121            2 DWSCALCQVSTTSKRDLDEHLHGKKHKARKKDYLE   36 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~GkkHk~~~e~l~~   36 (202)
                      +-+|.||.+.-.||..-..|.+|+||..|+..+-.
T Consensus        32 d~~CkvC~a~L~seSQriaHYeskkHa~kvr~yf~   66 (72)
T d1zu1a1          32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMA   66 (72)
T ss_dssp             SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45899999999999999999999999999986544

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.37  E-value=0.011  Score=37.52  Aligned_cols=32  Identities=16%  Similarity=0.290  Sum_probs=30.1

Q ss_pred             ecccccccCCCHHHHHhhhcchhHHHHhhhhh
Q 045121          138 WCEVFQVGTHSAVVMEGHKRGKKHMARSNGSR  169 (202)
Q Consensus       138 ~Ce~C~v~~~se~~~~~Hl~GkKH~~k~~~~~  169 (202)
                      -|.+|+|..++....+.|+--+.|.++|+..-
T Consensus         8 eC~lC~vKYs~~~SvrdHiFskqHI~~Vk~~v   39 (48)
T d2yrka1           8 ECTLCGVKYSARLSIRDHIFSKQHISKVRETV   39 (48)
T ss_dssp             CCTTTTCCCCSSSCHHHHHTSHHHHHHHHHTT
T ss_pred             cCcccceeeeeecchHhhhhhHHHHHHHHHHH
Confidence            69999999999999999999999999999754

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=92.11  E-value=0.032  Score=31.55  Aligned_cols=22  Identities=18%  Similarity=0.591  Sum_probs=20.5

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|+..|+....|..|..
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r   23 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYR   23 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHH
T ss_pred             cCCCCCCCCCCCCchHcccccC
Confidence            6899999999999999999974

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.08  E-value=0.035  Score=32.77  Aligned_cols=25  Identities=32%  Similarity=0.646  Sum_probs=22.2

Q ss_pred             ceeccccccccCCHHHHHHhhcCcchH
Q 045121            2 DWSCALCQVSTTSKRDLDEHLHGKKHK   28 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~GkkHk   28 (202)
                      +|.|.+|+..|+....|..|+  +.|-
T Consensus         7 Py~C~~C~k~F~~~~~L~~H~--r~Ht   31 (35)
T d1srka_           7 PFVCRICLSAFTTKANCARHL--KVHT   31 (35)
T ss_dssp             CEECSSSCCEESSHHHHHHHH--GGGT
T ss_pred             cccCCCCCCcccChHHHHHHc--cccC
Confidence            789999999999999999997  4553

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.91  E-value=0.036  Score=32.69  Aligned_cols=25  Identities=16%  Similarity=0.246  Sum_probs=22.0

Q ss_pred             cceecccccccCCCHHHHHhhhcchhH
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKRGKKH  161 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~GkKH  161 (202)
                      .+|.|++|+..|+....|..|++  .|
T Consensus         6 kPy~C~~C~k~F~~~~~L~~H~r--~H   30 (35)
T d1srka_           6 RPFVCRICLSAFTTKANCARHLK--VH   30 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHG--GG
T ss_pred             ccccCCCCCCcccChHHHHHHcc--cc
Confidence            35899999999999999999984  55

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.73  E-value=0.034  Score=33.15  Aligned_cols=20  Identities=15%  Similarity=0.306  Sum_probs=18.6

Q ss_pred             eecccccccCCCHHHHHhhh
Q 045121          137 FWCEVFQVGTHSAVVMEGHK  156 (202)
Q Consensus       137 ~~Ce~C~v~~~se~~~~~Hl  156 (202)
                      -||..|+|+|++-.+|..|.
T Consensus         9 rYC~~CDI~Fn~~~T~~aHK   28 (36)
T d1fu9a_           9 KYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             SEETTTTEECSSHHHHHHHH
T ss_pred             hHHhhCCceehhHHHHHHHH
Confidence            49999999999999999995

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.97  E-value=0.048  Score=30.63  Aligned_cols=22  Identities=18%  Similarity=0.588  Sum_probs=20.4

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|+-.|+....|..|+.
T Consensus         3 Py~C~~C~k~F~~~~~L~~H~r   24 (28)
T d1a1ia2           3 PFQCRICMRNFSRSDHLTTHIR   24 (28)
T ss_dssp             CEECTTTCCEESCHHHHHHHHH
T ss_pred             CccCCCCcCEecccccccccCC
Confidence            6899999999999999999974

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.68  E-value=0.04  Score=31.18  Aligned_cols=22  Identities=18%  Similarity=0.545  Sum_probs=20.5

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|+-+|+....|..|..
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r   23 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIK   23 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHH
T ss_pred             CEECCcCCCeecchHHhhhhcC
Confidence            6899999999999999999974

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.62  E-value=0.06  Score=31.71  Aligned_cols=22  Identities=18%  Similarity=0.548  Sum_probs=20.5

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|++|+..|+....|..|+.
T Consensus         8 P~~C~~C~k~F~~~~~L~~H~~   29 (36)
T d2ct1a2           8 PYECYICHARFTQSGTMKMHIL   29 (36)
T ss_dssp             SEECTTTCCEESCHHHHHHHHH
T ss_pred             CEeCCCCcccccchHHHHHHcc
Confidence            6899999999999999999964

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.41  E-value=0.065  Score=31.61  Aligned_cols=21  Identities=24%  Similarity=0.438  Sum_probs=20.1

Q ss_pred             ceeccccccccCCHHHHHHhh
Q 045121            2 DWSCALCQVSTTSKRDLDEHL   22 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl   22 (202)
                      +|.|.+|..+|+....|..|.
T Consensus        11 Py~C~~C~k~F~~~~~L~~H~   31 (37)
T d1p7aa_          11 PFQCPDCDRSFSRSDHLALHR   31 (37)
T ss_dssp             SBCCTTTCCCBSSHHHHHHHH
T ss_pred             CeEeCCCCCEecCHHHHHHHH
Confidence            689999999999999999997

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.92  E-value=0.04  Score=31.13  Aligned_cols=28  Identities=29%  Similarity=0.680  Sum_probs=25.8

Q ss_pred             ceeccccccccCCHHHHHHhhcCcchHH
Q 045121            2 DWSCALCQVSTTSKRDLDEHLHGKKHKA   29 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~GkkHk~   29 (202)
                      +|.|.-|..+|..+..|-.|+..|-|..
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSKaH~k   28 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSKAHSK   28 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CcccceeeeeEeeccchhHhhhhhhhcc
Confidence            5899999999999999999999998864

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.32  E-value=0.077  Score=31.21  Aligned_cols=23  Identities=13%  Similarity=0.112  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      -+|.|++|+..|+....|..|+.
T Consensus         7 kP~~C~~C~k~F~~~~~L~~H~~   29 (36)
T d2ct1a2           7 KPYECYICHARFTQSGTMKMHIL   29 (36)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHH
T ss_pred             CCEeCCCCcccccchHHHHHHcc
Confidence            35899999999999999999974

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.06  E-value=0.11  Score=30.32  Aligned_cols=24  Identities=21%  Similarity=0.371  Sum_probs=21.2

Q ss_pred             cCcceecccccccCCCHHHHHhhh
Q 045121          133 ENFEFWCEVFQVGTHSAVVMEGHK  156 (202)
Q Consensus       133 ~~~~~~Ce~C~v~~~se~~~~~Hl  156 (202)
                      +...|.|.-|.|.|.|.++|+.|.
T Consensus         5 kparf~c~pcgirfss~stleahq   28 (36)
T d1y0jb1           5 KPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SCCCCBCTTTCCBCSCHHHHHHHT
T ss_pred             cccceeccccceeecChhHHHhhh
Confidence            345689999999999999999995

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=88.69  E-value=0.1  Score=29.35  Aligned_cols=22  Identities=27%  Similarity=0.382  Sum_probs=20.1

Q ss_pred             ceecccccccCCCHHHHHhhhc
Q 045121          136 EFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       136 ~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      +|-|.+|+..|+..+.|..|++
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r   23 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYR   23 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHH
T ss_pred             cCCCCCCCCCCCCchHcccccC
Confidence            4789999999999999999984

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.57  E-value=0.13  Score=28.01  Aligned_cols=22  Identities=32%  Similarity=0.767  Sum_probs=20.9

Q ss_pred             CceeccccccccCCHHHHHHhh
Q 045121            1 MDWSCALCQVSTTSKRDLDEHL   22 (202)
Q Consensus         1 ~~w~C~lC~vt~tse~~l~~Hl   22 (202)
                      |+|.|+-|.-.|--+.+|++|.
T Consensus         1 mpykcsscsqqfmqkkdlqshm   22 (26)
T d2dlqa1           1 MPYKCSSCSQQFMQKKDLQSHM   22 (26)
T ss_dssp             CSEECSSSCCEESSHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHH
Confidence            7899999999999999999996

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.34  E-value=0.1  Score=29.19  Aligned_cols=22  Identities=18%  Similarity=0.292  Sum_probs=20.3

Q ss_pred             ceecccccccCCCHHHHHhhhc
Q 045121          136 EFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       136 ~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      +|-|++|+..|...+.|..|++
T Consensus         3 Py~C~~C~k~F~~~~~L~~H~r   24 (28)
T d1a1ia2           3 PFQCRICMRNFSRSDHLTTHIR   24 (28)
T ss_dssp             CEECTTTCCEESCHHHHHHHHH
T ss_pred             CccCCCCcCEecccccccccCC
Confidence            5889999999999999999974

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.20  E-value=0.04  Score=31.13  Aligned_cols=28  Identities=14%  Similarity=0.297  Sum_probs=25.4

Q ss_pred             ceecccccccCCCHHHHHhhhcchhHHH
Q 045121          136 EFWCEVFQVGTHSAVVMEGHKRGKKHMA  163 (202)
Q Consensus       136 ~~~Ce~C~v~~~se~~~~~Hl~GkKH~~  163 (202)
                      +|.|..||..|-..-.|.-|+..|-|.+
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSKaH~k   28 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSKAHSK   28 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CcccceeeeeEeeccchhHhhhhhhhcc
Confidence            4789999999999999999999998854

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.79  E-value=0.081  Score=33.37  Aligned_cols=29  Identities=24%  Similarity=0.686  Sum_probs=27.4

Q ss_pred             eccccccccCCHHHHHHhhcCcchHHHHH
Q 045121            4 SCALCQVSTTSKRDLDEHLHGKKHKARKK   32 (202)
Q Consensus         4 ~C~lC~vt~tse~~l~~Hl~GkkHk~~~e   32 (202)
                      -|.+|.|-.++...+++|.--+.|-+++.
T Consensus         8 eC~lC~vKYs~~~SvrdHiFskqHI~~Vk   36 (48)
T d2yrka1           8 ECTLCGVKYSARLSIRDHIFSKQHISKVR   36 (48)
T ss_dssp             CCTTTTCCCCSSSCHHHHHTSHHHHHHHH
T ss_pred             cCcccceeeeeecchHhhhhhHHHHHHHH
Confidence            49999999999999999999999999875

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.63  E-value=0.11  Score=31.11  Aligned_cols=22  Identities=18%  Similarity=0.507  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|+.|+..|+....|..|.+
T Consensus         5 py~C~~Cgk~F~~~~~L~~H~r   26 (39)
T d2epsa1           5 PYICQSCGKGFSRPDHLNGHIK   26 (39)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH
T ss_pred             CccCCCCCCCcCChHHhhccCc
Confidence            6899999999999999999964

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.42  E-value=0.15  Score=28.60  Aligned_cols=22  Identities=18%  Similarity=0.481  Sum_probs=19.9

Q ss_pred             ceecccccccCCCHHHHHhhhc
Q 045121          136 EFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       136 ~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      .|.|+-|++.|.-.++|.-|++
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIR   22 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIR   22 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CccccccCcccCCHHHHHHHHH
Confidence            3689999999999999999985

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.42  E-value=0.14  Score=30.02  Aligned_cols=26  Identities=23%  Similarity=0.309  Sum_probs=22.3

Q ss_pred             cceecccccccCCCHHHHHhhhcchhHH
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKRGKKHM  162 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~GkKH~  162 (202)
                      -+|.|.+|...|+....|..|+  +.|+
T Consensus        10 KPy~C~~C~k~F~~~~~L~~H~--r~H~   35 (37)
T d1p7aa_          10 KPFQCPDCDRSFSRSDHLALHR--KRHM   35 (37)
T ss_dssp             SSBCCTTTCCCBSSHHHHHHHH--GGGT
T ss_pred             cCeEeCCCCCEecCHHHHHHHH--hcCc
Confidence            4589999999999999999997  3553

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.25  E-value=0.12  Score=30.19  Aligned_cols=22  Identities=27%  Similarity=0.625  Sum_probs=20.5

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|..+|+....|..|+.
T Consensus         8 Py~C~~C~k~F~~~~~L~~H~r   29 (36)
T d1x6ha2           8 PYACSHCDKTFRQKQLLDMHFK   29 (36)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CEECCCCCCCcCCHhHHHHhCc
Confidence            6899999999999999999973

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.69  E-value=0.15  Score=28.23  Aligned_cols=22  Identities=18%  Similarity=0.413  Sum_probs=20.2

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|-|..|+-+|+....|..|.+
T Consensus         2 Py~C~eCgK~F~~~s~L~~Hqr   23 (26)
T d1x6ea2           2 PYKCLECGKAFSQNSGLINHQR   23 (26)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH
T ss_pred             CccCCCCcCeeccCcccccCcc
Confidence            6899999999999999999963

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.67  E-value=0.17  Score=29.77  Aligned_cols=22  Identities=27%  Similarity=0.563  Sum_probs=20.5

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|..|+.+|.....|..|..
T Consensus        12 py~C~~CgK~F~~~s~L~~H~r   33 (38)
T d2cota2          12 RYKCDECGKSFSHSSDLSKHRR   33 (38)
T ss_dssp             SSBCSSSCCBCSCHHHHHHHHT
T ss_pred             CEecCCCCceeeCHHHHHHhCc
Confidence            6899999999999999999975

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.36  E-value=0.15  Score=29.49  Aligned_cols=22  Identities=18%  Similarity=0.388  Sum_probs=20.3

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|..|+.+|+....|..|..
T Consensus         7 py~C~~Cgk~F~~~~~L~~H~r   28 (33)
T d1x6ea1           7 PYGCVECGKAFSRSSILVQHQR   28 (33)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH
T ss_pred             CeeCCCCCCEeCchHHhHhhcc
Confidence            6899999999999999999963

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.79  E-value=0.15  Score=28.69  Aligned_cols=22  Identities=14%  Similarity=0.169  Sum_probs=20.2

Q ss_pred             ceecccccccCCCHHHHHhhhc
Q 045121          136 EFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       136 ~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      +|-|.+|+-.|...+.|..|.+
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r   23 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIK   23 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHH
T ss_pred             CEECCcCCCeecchHHhhhhcC
Confidence            4789999999999999999975

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.41  E-value=0.25  Score=28.77  Aligned_cols=23  Identities=9%  Similarity=0.156  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      -+|-|++|+..|.....|..|++
T Consensus         7 kPy~C~~C~k~F~~~~~L~~H~r   29 (36)
T d1x6ha2           7 KPYACSHCDKTFRQKQLLDMHFK   29 (36)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHH
T ss_pred             CCEECCCCCCCcCCHhHHHHhCc
Confidence            35899999999999999999973

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.01  E-value=0.26  Score=29.40  Aligned_cols=23  Identities=17%  Similarity=0.356  Sum_probs=20.5

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      -+|-|++|+..|.....|..|++
T Consensus         4 Kpy~C~~Cgk~F~~~~~L~~H~r   26 (39)
T d2epsa1           4 KPYICQSCGKGFSRPDHLNGHIK   26 (39)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCccCCCCCCCcCChHHhhccCc
Confidence            35899999999999999999964

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.88  E-value=0.27  Score=30.18  Aligned_cols=22  Identities=23%  Similarity=0.560  Sum_probs=17.5

Q ss_pred             ceeccccccccCCHHHHHHhhc
Q 045121            2 DWSCALCQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~lC~vt~tse~~l~~Hl~   23 (202)
                      +|.|.+|+.+|+....|..|+.
T Consensus        30 py~C~~C~k~F~~~~~L~~H~r   51 (53)
T d2csha1          30 PYGCGVCGKKFKMKHHLVGHMK   51 (53)
T ss_dssp             SEECTTTSCEESSSHHHHHHHT
T ss_pred             CCcCCCcCCEecCHHHHHHHHh
Confidence            5778888888888888888863

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.41  E-value=0.33  Score=27.43  Aligned_cols=22  Identities=27%  Similarity=0.623  Sum_probs=20.2

Q ss_pred             ceeccc--cccccCCHHHHHHhhc
Q 045121            2 DWSCAL--CQVSTTSKRDLDEHLH   23 (202)
Q Consensus         2 ~w~C~l--C~vt~tse~~l~~Hl~   23 (202)
                      +|.|..  |.-.|+....|..|.+
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r   25 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLR   25 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHH
T ss_pred             CeeCCCCCCCceECChhHhhhhcC
Confidence            689999  9999999999999973

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.17  E-value=0.34  Score=27.85  Aligned_cols=23  Identities=13%  Similarity=0.215  Sum_probs=20.7

Q ss_pred             cceecccccccCCCHHHHHhhhc
Q 045121          135 FEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       135 ~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      .+|-|..|+..|+....|..|.+
T Consensus         6 kpy~C~~Cgk~F~~~~~L~~H~r   28 (33)
T d1x6ea1           6 KPYGCVECGKAFSRSSILVQHQR   28 (33)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeeCCCCCCEeCchHHhHhhcc
Confidence            45899999999999999999974

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.13  E-value=0.43  Score=27.91  Aligned_cols=24  Identities=13%  Similarity=0.255  Sum_probs=21.5

Q ss_pred             CcceecccccccCCCHHHHHhhhc
Q 045121          134 NFEFWCEVFQVGTHSAVVMEGHKR  157 (202)
Q Consensus       134 ~~~~~Ce~C~v~~~se~~~~~Hl~  157 (202)
                      .-+|-|+.|...|...+.|..|.+
T Consensus        10 ekpy~C~~CgK~F~~~s~L~~H~r   33 (38)
T d2cota2          10 RRRYKCDECGKSFSHSSDLSKHRR   33 (38)
T ss_dssp             SCSSBCSSSCCBCSCHHHHHHHHT
T ss_pred             CCCEecCCCCceeeCHHHHHHhCc
Confidence            456899999999999999999975