Conserved Domains and Related Protein Families
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability
Query
66
PF03141 506
Methyltransf_29: Putative S-adenosyl-L-methionine-
99.88
PF03141
506
Methyltransf_29: Putative S-adenosyl-L-methionine-
97.47
PRK00107 187
gidB 16S rRNA methyltransferase GidB; Reviewed
96.24
TIGR00537 179
hemK_rel_arch HemK-related putative methylase. The
92.04
PRK11188 209
rrmJ 23S rRNA methyltransferase J; Provisional
91.89
PRK09328 275
N5-glutamine S-adenosyl-L-methionine-dependent met
90.01
PRK00121 202
trmB tRNA (guanine-N(7)-)-methyltransferase; Revie
90.0
PRK14968 188
putative methyltransferase; Provisional
89.81
TIGR00438 188
rrmJ cell division protein FtsJ.
88.01
PRK04266 226
fibrillarin; Provisional
87.41
TIGR03704 251
PrmC_rel_meth putative protein-(glutamine-N5) meth
86.92
PRK00517 250
prmA ribosomal protein L11 methyltransferase; Revi
86.46
PLN02232 160
ubiquinone biosynthesis methyltransferase
85.8
KOG2361 264
consensus Predicted methyltransferase [General fun
85.8
TIGR00536 284
hemK_fam HemK family putative methylases. The gene
85.78
TIGR00138 181
gidB 16S rRNA methyltransferase GidB. GidB (glucos
85.27
COG2890 280
HemK Methylase of polypeptide chain release factor
84.56
KOG4300 252
consensus Predicted methyltransferase [General fun
83.75
TIGR00091 194
tRNA (guanine-N(7)-)-methyltransferase. In E. coli
82.7
PRK00377 198
cbiT cobalt-precorrin-6Y C(15)-methyltransferase;
81.8
PRK08287 187
cobalt-precorrin-6Y C(15)-methyltransferase; Valid
81.74
TIGR03534 251
RF_mod_PrmC protein-(glutamine-N5) methyltransfera
81.51
PF01728 181
FtsJ: FtsJ-like methyltransferase; InterPro: IPR00
81.41
PLN02781 234
Probable caffeoyl-CoA O-methyltransferase
81.33
PRK04457 262
spermidine synthase; Provisional
80.47
PRK14966 423
unknown domain/N5-glutamine S-adenosyl-L-methionin
80.14
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases
Back Hide alignment and domain information
Probab=99.88 E-value=5.3e-23 Score=158.63 Aligned_cols=54 Identities=61% Similarity=0.913 Sum_probs=53.5
Q ss_pred CceeccCCcEEEEEcCHHHHHHHHhhhccCCceeEEeecCCCCcCcceEEEEEe
Q 045201 1 MDRILRPEGAVIIRDQADVLVKVRKIVGGMRWNTKIIDHEDGPLVTEKILFAVK 54 (66)
Q Consensus 1 MDRILRP~G~vIiRD~~~vi~~v~~i~~~l~W~~~~~~~e~~~~~~e~iLi~~K 54 (66)
|||||||||+|||||+.++|++|++|+++|||+++++++|+|++++||||+|||
T Consensus 453 mDRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 453 MDRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred hHhhcCCCceEEEeccHHHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 899999999999999999999999999999999999999999999999999998
; GO: 0008168 methyltransferase activity
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases
Back Show alignment and domain information
Probab=97.47 E-value=7.9e-05 Score=58.56 Aligned_cols=48 Identities=17% Similarity=0.316 Sum_probs=36.5
Q ss_pred CceeccCCcEEEEEc----------CHHHHHHHHhhhccCCceeEEeecCCCCcCcceEEEEEecc
Q 045201 1 MDRILRPEGAVIIRD----------QADVLVKVRKIVGGMRWNTKIIDHEDGPLVTEKILFAVKRY 56 (66)
Q Consensus 1 MDRILRP~G~vIiRD----------~~~vi~~v~~i~~~l~W~~~~~~~e~~~~~~e~iLi~~K~~ 56 (66)
+||||||||+++.-- ..+.-.+++.++++|-|+.... +..+-|=||+.
T Consensus 205 vdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~--------~~~~aIwqKp~ 262 (506)
T PF03141_consen 205 VDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAE--------KGDTAIWQKPT 262 (506)
T ss_pred hhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHhee--------eCCEEEEeccC
Confidence 699999999998843 3577889999999999985432 23366767754
; GO: 0008168 methyltransferase activity
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Back Show alignment and domain information
Probab=96.24 E-value=0.013 Score=39.86 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=42.0
Q ss_pred eeccCCcEEEEEcCHHHHHHHHhhhccCCceeE--EeecCCCCcCcceEEEEEec
Q 045201 3 RILRPEGAVIIRDQADVLVKVRKIVGGMRWNTK--IIDHEDGPLVTEKILFAVKR 55 (66)
Q Consensus 3 RILRP~G~vIiRD~~~vi~~v~~i~~~l~W~~~--~~~~e~~~~~~e~iLi~~K~ 55 (66)
|.|+|||.+++=+-.....++..++..+.|+.. +..+-+|-.+...+.+.+|+
T Consensus 133 ~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (187)
T PRK00107 133 PLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPGLDGERHLVIIRKK 187 (187)
T ss_pred HhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCCCCCcEEEEEEecC
Confidence 789999999999999999999999999999853 44444444445667777774
>TIGR00537 hemK_rel_arch HemK-related putative methylase
Back Show alignment and domain information
Probab=92.04 E-value=0.37 Score=31.41 Aligned_cols=40 Identities=13% Similarity=0.114 Sum_probs=30.9
Q ss_pred ceeccCCcEEEEEcCHHH-HHHHHhhhccCCceeEEeecCC
Q 045201 2 DRILRPEGAVIIRDQADV-LVKVRKIVGGMRWNTKIIDHED 41 (66)
Q Consensus 2 DRILRP~G~vIiRD~~~v-i~~v~~i~~~l~W~~~~~~~e~ 41 (66)
.|+|+|||.+++-+.... ..++.+.++...++..+.....
T Consensus 127 ~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~ 167 (179)
T TIGR00537 127 PEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERG 167 (179)
T ss_pred HHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEee
Confidence 489999999999876666 7777888888888877654443
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Back Show alignment and domain information
Probab=91.89 E-value=0.18 Score=34.42 Aligned_cols=49 Identities=14% Similarity=0.268 Sum_probs=29.4
Q ss_pred eeccCCcEEEEE-----cCHHHHHHHHhhhccCCceeEEeecCCCCcCcceEEEEEe
Q 045201 3 RILRPEGAVIIR-----DQADVLVKVRKIVGGMRWNTKIIDHEDGPLVTEKILFAVK 54 (66)
Q Consensus 3 RILRP~G~vIiR-----D~~~vi~~v~~i~~~l~W~~~~~~~e~~~~~~e~iLi~~K 54 (66)
|+|+|||.++|- +-.+++.++++.....+. .-+...-..+.|..++|..
T Consensus 153 ~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~---~Kp~ssr~~s~e~~~~~~~ 206 (209)
T PRK11188 153 DVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKV---RKPDSSRARSREVYIVATG 206 (209)
T ss_pred HHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEE---ECCccccccCceeEEEeec
Confidence 689999999993 335556555554444433 1122222235789999864
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Back Show alignment and domain information
Probab=90.01 E-value=0.83 Score=31.24 Aligned_cols=49 Identities=14% Similarity=0.265 Sum_probs=33.5
Q ss_pred eeccCCcEEEEEcCHHHHHHHHhhhccCCce-eEEeecCCCCcCcceEEEEEe
Q 045201 3 RILRPEGAVIIRDQADVLVKVRKIVGGMRWN-TKIIDHEDGPLVTEKILFAVK 54 (66)
Q Consensus 3 RILRP~G~vIiRD~~~vi~~v~~i~~~l~W~-~~~~~~e~~~~~~e~iLi~~K 54 (66)
+.|+|||++++--...--..+++++....+. +... . .-.+.+++++++|
T Consensus 226 ~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~--~-d~~~~~r~~~~~~ 275 (275)
T PRK09328 226 RYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETR--K-DLAGRDRVVLGRR 275 (275)
T ss_pred HhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEe--c-CCCCCceEEEEEC
Confidence 7899999999975555566788888766664 3332 1 2224688888764
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Back Show alignment and domain information
Probab=90.00 E-value=0.37 Score=32.50 Aligned_cols=36 Identities=14% Similarity=0.079 Sum_probs=29.6
Q ss_pred ceeccCCcEEEEE-cCHHHHHHHHhhhccCCceeEEe
Q 045201 2 DRILRPEGAVIIR-DQADVLVKVRKIVGGMRWNTKII 37 (66)
Q Consensus 2 DRILRP~G~vIiR-D~~~vi~~v~~i~~~l~W~~~~~ 37 (66)
-|+|+|||.++|- +....+..+.+.+..-.|.+++.
T Consensus 143 ~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~~ 179 (202)
T PRK00121 143 ARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVSE 179 (202)
T ss_pred HHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccccc
Confidence 4789999999885 78888888888888888887743
>PRK14968 putative methyltransferase; Provisional
Back Show alignment and domain information
Probab=89.81 E-value=0.76 Score=29.30 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=30.9
Q ss_pred ceeccCCcEEEEEcC-HHHHHHHHhhhccCCceeEEeecCCCCcCcceEEEEE
Q 045201 2 DRILRPEGAVIIRDQ-ADVLVKVRKIVGGMRWNTKIIDHEDGPLVTEKILFAV 53 (66)
Q Consensus 2 DRILRP~G~vIiRD~-~~vi~~v~~i~~~l~W~~~~~~~e~~~~~~e~iLi~~ 53 (66)
.|+|+|+|.+++=-. ..-..++.+.+....|.........-+++.=.+++.+
T Consensus 135 ~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 187 (188)
T PRK14968 135 GRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEEKFPFEELIVLELV 187 (188)
T ss_pred HHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeecccCCceEEEEEEe
Confidence 378999998876433 2235678888888888765433333333333344443
>TIGR00438 rrmJ cell division protein FtsJ
Back Show alignment and domain information
Probab=88.01 E-value=1 Score=29.62 Aligned_cols=47 Identities=19% Similarity=0.391 Sum_probs=27.2
Q ss_pred eeccCCcEEEEE----cC-HHHHHHHHhhhccCCceeEEee-cCCCCcCcceEEEEE
Q 045201 3 RILRPEGAVIIR----DQ-ADVLVKVRKIVGGMRWNTKIID-HEDGPLVTEKILFAV 53 (66)
Q Consensus 3 RILRP~G~vIiR----D~-~~vi~~v~~i~~~l~W~~~~~~-~e~~~~~~e~iLi~~ 53 (66)
|+|+|||.+++- +. .+++.+++. .+ |.+.+.. .-......|+.++|.
T Consensus 134 ~~LkpgG~lvi~~~~~~~~~~~l~~l~~---~~-~~~~~~~~~~~~~~~~~~~~~~~ 186 (188)
T TIGR00438 134 EVLKPKGNFVVKVFQGEEIDEYLNELRK---LF-EKVKVTKPQASRKRSAEVYIVAK 186 (188)
T ss_pred HHccCCCEEEEEEccCccHHHHHHHHHh---hh-ceEEEeCCCCCCcccceEEEEEe
Confidence 689999999992 21 244444444 22 4454432 222223469999985
>PRK04266 fibrillarin; Provisional
Back Show alignment and domain information
Probab=87.41 E-value=2.2 Score=29.75 Aligned_cols=12 Identities=17% Similarity=0.487 Sum_probs=10.8
Q ss_pred ceeccCCcEEEE
Q 045201 2 DRILRPEGAVII 13 (66)
Q Consensus 2 DRILRP~G~vIi 13 (66)
-|+|+|||.++|
T Consensus 163 ~r~LKpGG~lvI 174 (226)
T PRK04266 163 EFFLKDGGYLLL 174 (226)
T ss_pred HHhcCCCcEEEE
Confidence 378999999999
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific
Back Show alignment and domain information
Probab=86.92 E-value=0.84 Score=32.07 Aligned_cols=40 Identities=10% Similarity=0.135 Sum_probs=33.7
Q ss_pred eeccCCcEEEEEcCHHHHHHHHhhhccCCceeEEeecCCC
Q 045201 3 RILRPEGAVIIRDQADVLVKVRKIVGGMRWNTKIIDHEDG 42 (66)
Q Consensus 3 RILRP~G~vIiRD~~~vi~~v~~i~~~l~W~~~~~~~e~~ 42 (66)
++|+|+|.+++-=..+-...+..++....|+..+..+++-
T Consensus 204 ~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 204 DWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEEL 243 (251)
T ss_pred HhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEcccc
Confidence 6899999999877777788999999988998888776654
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Back Show alignment and domain information
Probab=86.46 E-value=2.6 Score=29.19 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=31.6
Q ss_pred eeccCCcEEEEEcC-HHHHHHHHhhhccCCceeEEeecCCCCcCcceEEEEEe
Q 045201 3 RILRPEGAVIIRDQ-ADVLVKVRKIVGGMRWNTKIIDHEDGPLVTEKILFAVK 54 (66)
Q Consensus 3 RILRP~G~vIiRD~-~~vi~~v~~i~~~l~W~~~~~~~e~~~~~~e~iLi~~K 54 (66)
|.|+|||.+|+-+- .+-...+.+.+....+.......+++ -.-++++|
T Consensus 201 ~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~~~----W~~~~~~~ 249 (250)
T PRK00517 201 RLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLERGE----WVALVGKK 249 (250)
T ss_pred HhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEeCC----EEEEEEEe
Confidence 67999999999863 34566777888888887654333322 33455554
>PLN02232 ubiquinone biosynthesis methyltransferase
Back Show alignment and domain information
Probab=85.80 E-value=0.3 Score=31.84 Aligned_cols=16 Identities=38% Similarity=0.491 Sum_probs=13.5
Q ss_pred ceeccCCcEEEEEcCH
Q 045201 2 DRILRPEGAVIIRDQA 17 (66)
Q Consensus 2 DRILRP~G~vIiRD~~ 17 (66)
-|+|+|||.++|-|-.
T Consensus 68 ~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 68 YRVLKPGSRVSILDFN 83 (160)
T ss_pred HHHcCcCeEEEEEECC
Confidence 5899999999988753
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Back Show alignment and domain information
Probab=85.80 E-value=0.39 Score=35.51 Aligned_cols=14 Identities=36% Similarity=0.883 Sum_probs=12.6
Q ss_pred eeccCCcEEEEEcC
Q 045201 3 RILRPEGAVIIRDQ 16 (66)
Q Consensus 3 RILRP~G~vIiRD~ 16 (66)
|+|+|||.+++||=
T Consensus 171 ~llKPGG~llfrDY 184 (264)
T KOG2361|consen 171 TLLKPGGSLLFRDY 184 (264)
T ss_pred HHhCCCcEEEEeec
Confidence 68999999999984
>TIGR00536 hemK_fam HemK family putative methylases
Back Show alignment and domain information
Probab=85.78 E-value=2.9 Score=29.53 Aligned_cols=49 Identities=12% Similarity=0.222 Sum_probs=35.5
Q ss_pred eeccCCcEEEEEcCHHHHHHHHhhhc-cCCce-eEEeecCCCCcCcceEEEEEe
Q 045201 3 RILRPEGAVIIRDQADVLVKVRKIVG-GMRWN-TKIIDHEDGPLVTEKILFAVK 54 (66)
Q Consensus 3 RILRP~G~vIiRD~~~vi~~v~~i~~-~l~W~-~~~~~~e~~~~~~e~iLi~~K 54 (66)
+.|+|||++++--..+--..+.+++. ...|. +.+. .+ -.+.++++++++
T Consensus 232 ~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~--~D-~~g~~R~~~~~~ 282 (284)
T TIGR00536 232 DYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENG--RD-LNGKERVVLGFY 282 (284)
T ss_pred HhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEe--cC-CCCCceEEEEEe
Confidence 57999999999888777778888776 46674 3332 22 334789999875
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
>TIGR00138 gidB 16S rRNA methyltransferase GidB
Back Show alignment and domain information
Probab=85.27 E-value=0.46 Score=31.88 Aligned_cols=36 Identities=8% Similarity=0.066 Sum_probs=28.1
Q ss_pred ceeccCCcEEEEEcCHHHHHHHHhhhcc-CCceeEEe
Q 045201 2 DRILRPEGAVIIRDQADVLVKVRKIVGG-MRWNTKII 37 (66)
Q Consensus 2 DRILRP~G~vIiRD~~~vi~~v~~i~~~-l~W~~~~~ 37 (66)
.|.|+|||.+++.+...-..++..+.+. -.|.....
T Consensus 129 ~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~ 165 (181)
T TIGR00138 129 LNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPL 165 (181)
T ss_pred HHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEe
Confidence 4789999999999999999998888755 23554433
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Probab=84.56 E-value=2 Score=30.95 Aligned_cols=51 Identities=16% Similarity=0.276 Sum_probs=38.0
Q ss_pred eeccCCcEEEEEcCHHHHHHHHhhhccCCceeEEeecCCCCcCcceEEEEEe
Q 045201 3 RILRPEGAVIIRDQADVLVKVRKIVGGMRWNTKIIDHEDGPLVTEKILFAVK 54 (66)
Q Consensus 3 RILRP~G~vIiRD~~~vi~~v~~i~~~l~W~~~~~~~e~~~~~~e~iLi~~K 54 (66)
++|.|+|++++.-..+--.+|+++.....+ .........-.+.++++++++
T Consensus 226 ~~l~~~g~l~le~g~~q~~~v~~~~~~~~~-~~~v~~~~d~~g~~rv~~~~~ 276 (280)
T COG2890 226 DILKPGGVLILEIGLTQGEAVKALFEDTGF-FEIVETLKDLFGRDRVVLAKL 276 (280)
T ss_pred HHcCCCcEEEEEECCCcHHHHHHHHHhcCC-ceEEEEEecCCCceEEEEEEe
Confidence 689999999999998888999999998886 333333333345677777665
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Back Show alignment and domain information
Probab=83.75 E-value=0.54 Score=34.49 Aligned_cols=16 Identities=38% Similarity=0.800 Sum_probs=13.5
Q ss_pred ceeccCCcEEEEEcCH
Q 045201 2 DRILRPEGAVIIRDQA 17 (66)
Q Consensus 2 DRILRP~G~vIiRD~~ 17 (66)
-|+|||||.+|+=+..
T Consensus 169 ~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 169 RRLLRPGGRIIFIEHV 184 (252)
T ss_pred HHhcCCCcEEEEEecc
Confidence 3899999999987664
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase
Back Show alignment and domain information
Probab=82.70 E-value=1.5 Score=29.27 Aligned_cols=28 Identities=14% Similarity=0.382 Sum_probs=20.4
Q ss_pred eeccCCcEEEEE-cCHHHHHHHHhhhccC
Q 045201 3 RILRPEGAVIIR-DQADVLVKVRKIVGGM 30 (66)
Q Consensus 3 RILRP~G~vIiR-D~~~vi~~v~~i~~~l 30 (66)
|+|+|||.+++. |..+....+.+.+...
T Consensus 120 r~LkpgG~l~~~td~~~~~~~~~~~~~~~ 148 (194)
T TIGR00091 120 NVLKKGGVIHFKTDNEPLFEDMLKVLSEN 148 (194)
T ss_pred HHhCCCCEEEEEeCCHHHHHHHHHHHHhC
Confidence 789999999987 5555666666665543
In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Back Show alignment and domain information
Probab=81.80 E-value=2.6 Score=27.99 Aligned_cols=33 Identities=12% Similarity=0.284 Sum_probs=24.4
Q ss_pred eeccCCcEEEE-EcCHHHHHHHHhhhccCCceeE
Q 045201 3 RILRPEGAVII-RDQADVLVKVRKIVGGMRWNTK 35 (66)
Q Consensus 3 RILRP~G~vIi-RD~~~vi~~v~~i~~~l~W~~~ 35 (66)
|.|+|||.+++ --+.+.+.++...++.+.++..
T Consensus 133 ~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~~ 166 (198)
T PRK00377 133 EIIKKGGRIVIDAILLETVNNALSALENIGFNLE 166 (198)
T ss_pred HHcCCCcEEEEEeecHHHHHHHHHHHHHcCCCeE
Confidence 67999999988 2246667788888877666544
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Back Show alignment and domain information
Probab=81.74 E-value=1.6 Score=28.56 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=25.9
Q ss_pred eeccCCcEEEEEc-CHHHHHHHHhhhccCCce
Q 045201 3 RILRPEGAVIIRD-QADVLVKVRKIVGGMRWN 33 (66)
Q Consensus 3 RILRP~G~vIiRD-~~~vi~~v~~i~~~l~W~ 33 (66)
|.|+|||.+++-+ ..+-..++.++++...+.
T Consensus 119 ~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 119 AHLHPGGRLVLTFILLENLHSALAHLEKCGVS 150 (187)
T ss_pred HhcCCCeEEEEEEecHhhHHHHHHHHHHCCCC
Confidence 6799999999976 567778888899888885
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific
Back Show alignment and domain information
Probab=81.51 E-value=2.8 Score=28.02 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=26.5
Q ss_pred eeccCCcEEEEEcCHHHHHHHHhhhccCCce
Q 045201 3 RILRPEGAVIIRDQADVLVKVRKIVGGMRWN 33 (66)
Q Consensus 3 RILRP~G~vIiRD~~~vi~~v~~i~~~l~W~ 33 (66)
|.|+|||.+++--...-..++.+++....+.
T Consensus 205 ~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~ 235 (251)
T TIGR03534 205 RLLKPGGWLLLEIGYDQGEAVRALFEAAGFA 235 (251)
T ss_pred HhcccCCEEEEEECccHHHHHHHHHHhCCCC
Confidence 6799999999988877778888888877775
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes
Back Show alignment and domain information
Probab=81.41 E-value=2.1 Score=27.85 Aligned_cols=47 Identities=15% Similarity=0.387 Sum_probs=29.2
Q ss_pred eccCCcEEEE-----EcCHHHHHHHHhhhccCCceeEEeec-CCCCcCcceEEEEEe
Q 045201 4 ILRPEGAVII-----RDQADVLVKVRKIVGGMRWNTKIIDH-EDGPLVTEKILFAVK 54 (66)
Q Consensus 4 ILRP~G~vIi-----RD~~~vi~~v~~i~~~l~W~~~~~~~-e~~~~~~e~iLi~~K 54 (66)
.|+|||.+|+ -+..+++..++..-...+ ++.+ ..++.+.|..|+|.+
T Consensus 128 ~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~----~~Kp~~sr~~s~E~Ylv~~~ 180 (181)
T PF01728_consen 128 LLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVK----IVKPPSSRSESSEEYLVCRG 180 (181)
T ss_dssp HHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEE----EEE-TTSBTTCBEEEEESEE
T ss_pred hhcCCCEEEEEeccCccHHHHHHHHHhCCeEEE----EEECcCCCCCccEEEEEEcC
Confidence 5899997776 233467777766544433 3322 334456799999875
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Back Show alignment and domain information
Probab=81.33 E-value=5.2 Score=27.78 Aligned_cols=47 Identities=6% Similarity=0.130 Sum_probs=27.7
Q ss_pred eeccCCcEEEEEcC-------------H----HHHHHHH----hhhccCCceeEEeecCCCCcCcceEEEEEec
Q 045201 3 RILRPEGAVIIRDQ-------------A----DVLVKVR----KIVGGMRWNTKIIDHEDGPLVTEKILFAVKR 55 (66)
Q Consensus 3 RILRP~G~vIiRD~-------------~----~vi~~v~----~i~~~l~W~~~~~~~e~~~~~~e~iLi~~K~ 55 (66)
|.|||||.+|+-+. . .....++ .+...=++++.+...- +++++++|.
T Consensus 166 ~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~~lp~g------dG~~i~~k~ 233 (234)
T PLN02781 166 KLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEISQISIG------DGVTLCRRL 233 (234)
T ss_pred HhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEEEEEeC------CccEEEEEe
Confidence 57999999886321 0 1223333 3444556766665433 568888874
>PRK04457 spermidine synthase; Provisional
Back Show alignment and domain information
Probab=80.47 E-value=5.5 Score=28.17 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=28.3
Q ss_pred eeccCCcEEEE---EcCHHHHHHHHhhhccCCceeEEeecCCCCcCcceEEEEEe
Q 045201 3 RILRPEGAVII---RDQADVLVKVRKIVGGMRWNTKIIDHEDGPLVTEKILFAVK 54 (66)
Q Consensus 3 RILRP~G~vIi---RD~~~vi~~v~~i~~~l~W~~~~~~~e~~~~~~e~iLi~~K 54 (66)
+.|+|||.++| ..+...-..++.+...+.-.+.+...+.. ..-+++|.|
T Consensus 165 ~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~~~---~N~v~~a~~ 216 (262)
T PRK04457 165 NALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAESH---GNVAVFAFK 216 (262)
T ss_pred HhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecCCC---ccEEEEEEC
Confidence 57999999998 33433444455555555433333333322 256888876
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Back Show alignment and domain information
Probab=80.14 E-value=5.3 Score=31.06 Aligned_cols=50 Identities=10% Similarity=0.123 Sum_probs=35.9
Q ss_pred eeccCCcEEEEEcCHHHHHHHHhhhccCCcee-EEeecCCCCcCcceEEEEEec
Q 045201 3 RILRPEGAVIIRDQADVLVKVRKIVGGMRWNT-KIIDHEDGPLVTEKILFAVKR 55 (66)
Q Consensus 3 RILRP~G~vIiRD~~~vi~~v~~i~~~l~W~~-~~~~~e~~~~~~e~iLi~~K~ 55 (66)
+.|+|+|++++-=..+--+.+++++....|.. .+... -.+.++++++++.
T Consensus 369 ~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kD---l~G~dR~v~~~~~ 419 (423)
T PRK14966 369 DRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPD---LAGLDRVTLGKYM 419 (423)
T ss_pred HhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEc---CCCCcEEEEEEEh
Confidence 56999999988666667788999998888863 33222 2246899998753
Homologous Structure Templates
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
ID Alignment Graph Length
Definition
Probability
Query 66
2ld4_A 176
Anamorsin; methyltransferase-like fold, alpha/beta
96.18
3eey_A 197
Putative rRNA methylase; rRNA methylation, S-adeno
95.7
1jsx_A 207
Glucose-inhibited division protein B; methyltransf
94.97
3evz_A 230
Methyltransferase; NYSGXRC, NEW YORK SGX research
94.43
4dzr_A 215
Protein-(glutamine-N5) methyltransferase, release
94.12
2zfu_A 215
Nucleomethylin, cerebral protein 1; nucleolar prot
93.9
3mti_A 185
RRNA methylase; SAM-dependent, PSI, MCSG, structur
93.34
3tr6_A 225
O-methyltransferase; cellular processes; HET: SAH;
92.84
3e8s_A 227
Putative SAM dependent methyltransferase; NP_74470
92.04
3r3h_A 242
O-methyltransferase, SAM-dependent; structural gen
91.94
2plw_A 201
Ribosomal RNA methyltransferase, putative; malaria
91.58
3duw_A 223
OMT, O-methyltransferase, putative; alternating of
91.47
3ntv_A 232
MW1564 protein; rossmann fold, putative methyltran
91.29
2b3t_A 276
Protein methyltransferase HEMK; translation termin
90.98
2nyu_A 196
Putative ribosomal RNA methyltransferase 2; SAM, s
90.94
2i62_A 265
Nicotinamide N-methyltransferase; structural genom
90.7
3tfw_A 248
Putative O-methyltransferase; PSI-biology, nysgrc,
90.53
1ej0_A 180
FTSJ; methyltransferase, adoMet, adenosyl methioni
90.11
3ocj_A 305
Putative exported protein; structural genomics, PS
89.83
1xdz_A 240
Methyltransferase GIDB; MCSG, protein structure in
89.49
1y8c_A 246
S-adenosylmethionine-dependent methyltransferase;
89.44
2fca_A 213
TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac
89.29
3dr5_A 221
Putative O-methyltransferase; Q8NRD3, CGL1119, PF0
89.21
3e05_A 204
Precorrin-6Y C5,15-methyltransferase (decarboxyla;
89.16
2hnk_A 239
SAM-dependent O-methyltransferase; modified rossma
89.13
3cbg_A 232
O-methyltransferase; cyanobacterium; HET: SAH FER
89.05
3dh0_A 219
SAM dependent methyltransferase; cystal structure,
88.85
3h2b_A 203
SAM-dependent methyltransferase; alpha-beta protei
88.79
2xyq_A 290
Putative 2'-O-methyl transferase; transferase-vira
88.69
3opn_A 232
Putative hemolysin; structural genomics, PSI-2, pr
88.45
3hnr_A 220
Probable methyltransferase BT9727_4108; structural
88.45
2avd_A 229
Catechol-O-methyltransferase; structural genomics,
88.28
2xvm_A 199
Tellurite resistance protein TEHB; antibiotic resi
88.08
1yzh_A 214
TRNA (guanine-N(7)-)-methyltransferase; alpha-beta
87.71
3dlc_A 219
Putative S-adenosyl-L-methionine-dependent methylt
87.66
3cgg_A 195
SAM-dependent methyltransferase; NP_600671.1, meth
87.34
3dou_A 191
Ribosomal RNA large subunit methyltransferase J; c
87.28
3jwg_A 219
HEN1, methyltransferase type 12; 1.90A {Clostridiu
87.23
3lpm_A 259
Putative methyltransferase; structural genomics, p
87.23
1l3i_A 192
Precorrin-6Y methyltransferase/putative decarboxyl
86.67
1nt2_A 210
Fibrillarin-like PRE-rRNA processing protein; adeM
86.62
3c3y_A 237
Pfomt, O-methyltransferase; plant secondary metabo
86.6
1fbn_A 230
MJ fibrillarin homologue; MJ proteins, ribosomal R
86.41
1sui_A 247
Caffeoyl-COA O-methyltransferase; rossmann fold, p
85.98
3c3p_A 210
Methyltransferase; NP_951602.1, structural genomic
85.76
3pfg_A 263
N-methyltransferase; N,N-dimethyltransferase, SAM
85.75
1dus_A 194
MJ0882; hypothetical protein, methanococcus jannas
85.02
3hp7_A 291
Hemolysin, putative; structural genomics, APC64019
84.42
2oxt_A 265
Nucleoside-2'-O-methyltransferase; flavivirus, vir
84.37
3ckk_A 235
TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-
84.01
2pxx_A 215
Uncharacterized protein MGC2408; structural genomi
83.89
1iy9_A 275
Spermidine synthase; rossmann fold, structural gen
83.15
1g8a_A 227
Fibrillarin-like PRE-rRNA processing protein; rRNA
83.15
3sso_A 419
Methyltransferase; macrolide, natural product, ros
83.12
3bxo_A 239
N,N-dimethyltransferase; desosamine, sugar, carboh
82.59
2frn_A 278
Hypothetical protein PH0793; structural genomics,
82.56
1mjf_A 281
Spermidine synthase; spermidine synthetase, struct
81.99
2ipx_A 233
RRNA 2'-O-methyltransferase fibrillarin; FBL, stru
81.55
3njr_A 204
Precorrin-6Y methylase; methyltransferase, decarbo
81.27
3dxy_A 218
TRNA (guanine-N(7)-)-methyltransferase; rossmann f
81.25
3fpf_A 298
Mtnas, putative uncharacterized protein; thermonic
80.98
3id6_C 232
Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;
80.97
3sm3_A 235
SAM-dependent methyltransferases; NESG, structural
80.91
3hm2_A 178
Precorrin-6Y C5,15-methyltransferase; alpha-beta-s
80.67
1inl_A 296
Spermidine synthase; beta-barrel, rossman fold, st
80.43
2a14_A 263
Indolethylamine N-methyltransferase; SGC,INMT, str
80.33
4gek_A 261
TRNA (CMO5U34)-methyltransferase; structural genom
80.24
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Back Hide alignment and structure
Probab=96.18 E-value=0.0013 Score=40.78 Aligned_cols=59 Identities=17% Similarity=0.259 Sum_probs=35.1
Q ss_pred eeccCCcEEEEEcCHH----------HHHHHHhhhccCCceeEEeecCCCCcC------------------cceEEEEEe
Q 045201 3 RILRPEGAVIIRDQAD----------VLVKVRKIVGGMRWNTKIIDHEDGPLV------------------TEKILFAVK 54 (66)
Q Consensus 3 RILRP~G~vIiRD~~~----------vi~~v~~i~~~l~W~~~~~~~e~~~~~------------------~e~iLi~~K 54 (66)
|+|+|||.+++.+... ..+++.+.+..-.+ +.+......+.. .--+++|+|
T Consensus 89 r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~K 167 (176)
T 2ld4_A 89 RILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VEVKELQREPLTPEEVQSVREHLGHESDNLLFVQITGKK 167 (176)
T ss_dssp HHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EEEEEEEEECCCHHHHHHHHHHTCCCCSSEEEEEEEEEC
T ss_pred HHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cEeecCcccCCCHHHHHHHHHHhcccCCceEEEEEeccC
Confidence 7899999999964321 14566666665555 333322111111 134788999
Q ss_pred cceecCCC
Q 045201 55 RYWVTENV 62 (66)
Q Consensus 55 ~~W~~~~~ 62 (66)
.-|..+++
T Consensus 168 p~~~~gs~ 175 (176)
T 2ld4_A 168 PNFEVGSS 175 (176)
T ss_dssp CCSSCCSC
T ss_pred CcccccCC
Confidence 88876655
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Back Show alignment and structure
Probab=95.70 E-value=0.017 Score=35.99 Aligned_cols=54 Identities=13% Similarity=0.115 Sum_probs=35.4
Q ss_pred eeccCCcEEEEEcC------HHHHHHHHhhhccC---CceeEEeecCCCCcCcceEEEEEecc
Q 045201 3 RILRPEGAVIIRDQ------ADVLVKVRKIVGGM---RWNTKIIDHEDGPLVTEKILFAVKRY 56 (66)
Q Consensus 3 RILRP~G~vIiRD~------~~vi~~v~~i~~~l---~W~~~~~~~e~~~~~~e~iLi~~K~~ 56 (66)
|+|+|||.+++-+- .+-...+..++..+ .|.+.....-+.+.....+++++|.+
T Consensus 127 ~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~pp~~~~~~~~~ 189 (197)
T 3eey_A 127 ELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQANCPPILVCIEKIS 189 (197)
T ss_dssp HHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETTCCSCCCEEEEEEECC
T ss_pred HhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEeccCccCCCeEEEEEEcc
Confidence 68999999998851 22344555555554 48876555555444567788888864
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Back Show alignment and structure
Probab=94.97 E-value=0.02 Score=35.92 Aligned_cols=51 Identities=2% Similarity=-0.059 Sum_probs=34.3
Q ss_pred eeccCCcEEEEEcCHHHHHHHHhhhccCCceeEE-e-ecCCCCcCcceEEEEEec
Q 045201 3 RILRPEGAVIIRDQADVLVKVRKIVGGMRWNTKI-I-DHEDGPLVTEKILFAVKR 55 (66)
Q Consensus 3 RILRP~G~vIiRD~~~vi~~v~~i~~~l~W~~~~-~-~~e~~~~~~e~iLi~~K~ 55 (66)
|.|+|||.+++-.....-++++.+.+ .|+... . ..-....+...+++++|+
T Consensus 153 ~~L~~gG~l~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~k~ 205 (207)
T 1jsx_A 153 HLPGEQGRFYALKGQMPEDEIALLPE--EYQVESVVKLQVPALDGERHLVVIKAN 205 (207)
T ss_dssp TSEEEEEEEEEEESSCCHHHHHTSCT--TEEEEEEEEEECC--CCEEEEEEEEEC
T ss_pred HhcCCCcEEEEEeCCCchHHHHHHhc--CCceeeeeeeccCCCCCceEEEEEEec
Confidence 68999999999987777778888877 676432 1 122222345778887774
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Back Show alignment and structure
Probab=94.43 E-value=0.081 Score=33.65 Aligned_cols=51 Identities=22% Similarity=0.256 Sum_probs=36.8
Q ss_pred eeccCCcEEEE--EcCHHHHHHHHhhhccCCceeEEeecCCCCcCcceEEEEEe
Q 045201 3 RILRPEGAVII--RDQADVLVKVRKIVGGMRWNTKIIDHEDGPLVTEKILFAVK 54 (66)
Q Consensus 3 RILRP~G~vIi--RD~~~vi~~v~~i~~~l~W~~~~~~~e~~~~~~e~iLi~~K 54 (66)
|+|+|||.+++ -...+-..++.+.+....|++.......|. ..-.+|..+|
T Consensus 167 ~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~g~-~~~~~l~f~~ 219 (230)
T 3evz_A 167 DHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKFKVGT-RWRHSLIFFK 219 (230)
T ss_dssp GGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEECCCC--CEEEEEEEC
T ss_pred HHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEecCCC-eEEEEEEEec
Confidence 78999999988 445677889999999999987665544432 2355666655
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Back Show alignment and structure
Probab=94.12 E-value=0.051 Score=33.55 Aligned_cols=51 Identities=10% Similarity=0.117 Sum_probs=34.1
Q ss_pred ceeccCCcE-EEEEcCHHHHHHHHhhhc--cCCcee-EEeecCCCCcCcceEEEEEec
Q 045201 2 DRILRPEGA-VIIRDQADVLVKVRKIVG--GMRWNT-KIIDHEDGPLVTEKILFAVKR 55 (66)
Q Consensus 2 DRILRP~G~-vIiRD~~~vi~~v~~i~~--~l~W~~-~~~~~e~~~~~~e~iLi~~K~ 55 (66)
-|.|+|||. +++--...-...+.+++. .-.|.. .+..... +.+++++++|.
T Consensus 151 ~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~~~~~~~~~---~~~r~~~~~~~ 205 (215)
T 4dzr_A 151 PYVLARGRAGVFLEVGHNQADEVARLFAPWRERGFRVRKVKDLR---GIDRVIAVTRE 205 (215)
T ss_dssp GGGBCSSSEEEEEECTTSCHHHHHHHTGGGGGGTEECCEEECTT---SCEEEEEEEEC
T ss_pred HHHhcCCCeEEEEEECCccHHHHHHHHHHhhcCCceEEEEEecC---CCEEEEEEEEc
Confidence 478999999 777555556677777777 556643 3332222 35889998874
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Back Show alignment and structure
Probab=93.90 E-value=0.074 Score=33.49 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=36.9
Q ss_pred ceeccCCcEEEEEcCHH---HHHHHHhhhccCCceeEEeecCCCCcCcceEEEEEec
Q 045201 2 DRILRPEGAVIIRDQAD---VLVKVRKIVGGMRWNTKIIDHEDGPLVTEKILFAVKR 55 (66)
Q Consensus 2 DRILRP~G~vIiRD~~~---vi~~v~~i~~~l~W~~~~~~~e~~~~~~e~iLi~~K~ 55 (66)
-|+|+|||.++|-+-.. ..+++.+++....++....+...+ .--+++++|.
T Consensus 138 ~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~---~~~~~~~~k~ 191 (215)
T 2zfu_A 138 NRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDLTNS---HFFLFDFQKT 191 (215)
T ss_dssp HHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEECCST---TCEEEEEEEC
T ss_pred HHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEecCCC---eEEEEEEEec
Confidence 37899999999987554 567888888888887654433332 3467888885
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Back Show alignment and structure
Probab=93.34 E-value=0.12 Score=31.79 Aligned_cols=52 Identities=13% Similarity=-0.020 Sum_probs=28.8
Q ss_pred eeccCCcEEEEEcC------HHHHHHHHhhhcc---CCceeEEeecCCCCcCcceEEEEEe
Q 045201 3 RILRPEGAVIIRDQ------ADVLVKVRKIVGG---MRWNTKIIDHEDGPLVTEKILFAVK 54 (66)
Q Consensus 3 RILRP~G~vIiRD~------~~vi~~v~~i~~~---l~W~~~~~~~e~~~~~~e~iLi~~K 54 (66)
|.|+|||.+++-.- .+-.+.+..++.. -.|.+.....-+.......++++.|
T Consensus 123 ~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~ 183 (185)
T 3mti_A 123 DRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQINTPPFLVMLEK 183 (185)
T ss_dssp HHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESSCSSCCCEEEEEEE
T ss_pred HhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhccCCCCCeEEEEEe
Confidence 78999999988542 1223444444444 4477643333333223456666665
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Back Show alignment and structure
Probab=92.84 E-value=0.16 Score=32.08 Aligned_cols=47 Identities=17% Similarity=0.254 Sum_probs=29.3
Q ss_pred eeccCCcEEEEEcCH----------------HHHHHHHhhhccCCceeEEeecCCCCcCcceEEEEEec
Q 045201 3 RILRPEGAVIIRDQA----------------DVLVKVRKIVGGMRWNTKIIDHEDGPLVTEKILFAVKR 55 (66)
Q Consensus 3 RILRP~G~vIiRD~~----------------~vi~~v~~i~~~l~W~~~~~~~e~~~~~~e~iLi~~K~ 55 (66)
|.|+|||.+++-|-. .+-...+.+...-+|++.+... .+.+++++|+
T Consensus 162 ~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~------~dG~~~~~k~ 224 (225)
T 3tr6_A 162 KLLREGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMILIPI------GDGLTLARKK 224 (225)
T ss_dssp HHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEECS------TTCEEEEEEC
T ss_pred HhcCCCcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEEEEEEc------CCccEEEEEC
Confidence 679999999997653 1222233334445677665532 3568888885
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Back Show alignment and structure
Probab=92.04 E-value=0.2 Score=31.03 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=33.8
Q ss_pred eeccCCcEEEEEcCH--------------------------------HHHHHHHhhhccCCceeEEeecCCCCc---Ccc
Q 045201 3 RILRPEGAVIIRDQA--------------------------------DVLVKVRKIVGGMRWNTKIIDHEDGPL---VTE 47 (66)
Q Consensus 3 RILRP~G~vIiRD~~--------------------------------~vi~~v~~i~~~l~W~~~~~~~e~~~~---~~e 47 (66)
|+|+|||.++|-+-. ...+++.+++..-.++..-......+. ...
T Consensus 140 ~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~ 219 (227)
T 3e8s_A 140 TLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVSLQEPQHPQSAVPQS 219 (227)
T ss_dssp HTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEEEECCCCTTCSSCSC
T ss_pred HHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEEEecCCCCCCCCcee
Confidence 789999999997631 156888889999999865332221111 124
Q ss_pred eEEEEEe
Q 045201 48 KILFAVK 54 (66)
Q Consensus 48 ~iLi~~K 54 (66)
-+++++|
T Consensus 220 ~~~va~k 226 (227)
T 3e8s_A 220 LLMVAER 226 (227)
T ss_dssp EEEEEEE
T ss_pred EEEEeec
Confidence 5666666
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Back Show alignment and structure
Probab=91.94 E-value=0.25 Score=32.73 Aligned_cols=47 Identities=11% Similarity=0.220 Sum_probs=28.9
Q ss_pred eeccCCcEEEEEcCH----------------HHHHHHHhhhccCCceeEEeecCCCCcCcceEEEEEec
Q 045201 3 RILRPEGAVIIRDQA----------------DVLVKVRKIVGGMRWNTKIIDHEDGPLVTEKILFAVKR 55 (66)
Q Consensus 3 RILRP~G~vIiRD~~----------------~vi~~v~~i~~~l~W~~~~~~~e~~~~~~e~iLi~~K~ 55 (66)
|.|||||.+++-|-. .+-+..+.+...=++++.+... .+++++++|+
T Consensus 158 ~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~------~dG~~~~~k~ 220 (242)
T 3r3h_A 158 KLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLLAI------ADGMFLVQPI 220 (242)
T ss_dssp HHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEESS------SSCEEEEEEC
T ss_pred HhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEEEc------cCceEEEEEc
Confidence 689999999995532 1222333344445666665433 3569999875
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Back Show alignment and structure
Probab=91.58 E-value=0.11 Score=32.21 Aligned_cols=51 Identities=12% Similarity=0.162 Sum_probs=26.8
Q ss_pred eeccCCcEEEEEcCH-HHHHHHHhhhccCCce-eEEeec-CCCCcCcceEEEEEe
Q 045201 3 RILRPEGAVIIRDQA-DVLVKVRKIVGGMRWN-TKIIDH-EDGPLVTEKILFAVK 54 (66)
Q Consensus 3 RILRP~G~vIiRD~~-~vi~~v~~i~~~l~W~-~~~~~~-e~~~~~~e~iLi~~K 54 (66)
|+|+|||.+++..-. +-...+...+... +. +.+... ...+...|..++|++
T Consensus 142 ~~LkpgG~lv~~~~~~~~~~~l~~~l~~~-f~~v~~~~~~~~r~~s~e~y~v~~~ 195 (201)
T 2plw_A 142 QYINIGGTYIVKMYLGSQTNNLKTYLKGM-FQLVHTTKPKASRNESREIYLVCKN 195 (201)
T ss_dssp HHEEEEEEEEEEEECSTTHHHHHHHHHTT-EEEEEECCCC-----CCEEEEEEEE
T ss_pred HHccCCCEEEEEEeCCCCHHHHHHHHHHH-HheEEEECCcccCCcCceEEEEEec
Confidence 689999999984311 2233344444432 43 333222 222345689999986
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Back Show alignment and structure
Probab=91.47 E-value=0.32 Score=30.73 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=29.8
Q ss_pred eeccCCcEEEEEcCHH----------------HHHHHHhhhccCCceeEEeecCCCCcCcceEEEEEec
Q 045201 3 RILRPEGAVIIRDQAD----------------VLVKVRKIVGGMRWNTKIIDHEDGPLVTEKILFAVKR 55 (66)
Q Consensus 3 RILRP~G~vIiRD~~~----------------vi~~v~~i~~~l~W~~~~~~~e~~~~~~e~iLi~~K~ 55 (66)
|.|+|||.+++-|-.- +-+..+.+...=++.+.+...- +..+.+++++|+++
T Consensus 155 ~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~-~~~~~dG~~~~~~~ 222 (223)
T 3duw_A 155 KLSRPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATALQTV-GSKGYDGFIMAVVK 222 (223)
T ss_dssp HTCCTTCEEEEESCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEE-ETTEEEEEEEEEEC
T ss_pred HhcCCCcEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEecc-CCCCCCeeEEEEEe
Confidence 6899999999864421 1222333334456776654331 11125789988874
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Back Show alignment and structure
Probab=91.29 E-value=0.36 Score=31.30 Aligned_cols=47 Identities=15% Similarity=0.259 Sum_probs=28.7
Q ss_pred eeccCCcEEEEEcC-----------------HH----HHHHHHhhhccCCceeEEeecCCCCcCcceEEEEEec
Q 045201 3 RILRPEGAVIIRDQ-----------------AD----VLVKVRKIVGGMRWNTKIIDHEDGPLVTEKILFAVKR 55 (66)
Q Consensus 3 RILRP~G~vIiRD~-----------------~~----vi~~v~~i~~~l~W~~~~~~~e~~~~~~e~iLi~~K~ 55 (66)
|.|+|||.+++-|- .. +-...+.+...-++.+.+... .+.+.+++|+
T Consensus 164 ~~LkpgG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~------~dG~~i~~k~ 231 (232)
T 3ntv_A 164 PLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFLNI------DDGLAISIKG 231 (232)
T ss_dssp GGEEEEEEEEEECTTGGGGGGCGGGGGCHHHHHHHHHHHHHHHHHHTCTTEEEEEECS------TTCEEEEEEC
T ss_pred HhcCCCeEEEEeeCCcCccccCcccccchhhhHHHHHHHHHHHHHhcCCCeEEEEEEc------CCceEEEEEC
Confidence 78999999999221 11 222333444555777666533 2568999884
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Back Show alignment and structure
Probab=90.98 E-value=0.091 Score=34.93 Aligned_cols=49 Identities=10% Similarity=0.015 Sum_probs=35.6
Q ss_pred eeccCCcEEEEEcCHHHHHHHHhhhccCCcee-EEeecCCCCcCcceEEEEEe
Q 045201 3 RILRPEGAVIIRDQADVLVKVRKIVGGMRWNT-KIIDHEDGPLVTEKILFAVK 54 (66)
Q Consensus 3 RILRP~G~vIiRD~~~vi~~v~~i~~~l~W~~-~~~~~e~~~~~~e~iLi~~K 54 (66)
|.|+|||++++-....-..++++++....|+. .+...- .+.+++++++|
T Consensus 226 ~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~v~~~~d~---~g~~r~~~~~~ 275 (276)
T 2b3t_A 226 NALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDY---GDNERVTLGRY 275 (276)
T ss_dssp GGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEECT---TSSEEEEEEEC
T ss_pred HhcCCCCEEEEEECchHHHHHHHHHHHCCCcEEEEEecC---CCCCcEEEEEE
Confidence 67999999999877777778888887777753 333222 24688988875
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Back Show alignment and structure
Probab=90.94 E-value=0.12 Score=31.83 Aligned_cols=13 Identities=31% Similarity=0.710 Sum_probs=11.6
Q ss_pred eeccCCcEEEEEc
Q 045201 3 RILRPEGAVIIRD 15 (66)
Q Consensus 3 RILRP~G~vIiRD 15 (66)
|+|+|||.+++.+
T Consensus 133 ~~LkpgG~lv~~~ 145 (196)
T 2nyu_A 133 DILQPGGTFLCKT 145 (196)
T ss_dssp HHEEEEEEEEEEE
T ss_pred HHhcCCCEEEEEe
Confidence 6899999999984
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Back Show alignment and structure
Probab=90.70 E-value=0.16 Score=32.53 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=23.4
Q ss_pred eeccCCcEEEEEcCHH----------------HHHHHHhhhccCCceeE
Q 045201 3 RILRPEGAVIIRDQAD----------------VLVKVRKIVGGMRWNTK 35 (66)
Q Consensus 3 RILRP~G~vIiRD~~~----------------vi~~v~~i~~~l~W~~~ 35 (66)
|+|+|||.+|+.+... ..+.+.+++..-.++..
T Consensus 186 ~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 234 (265)
T 2i62_A 186 SLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIE 234 (265)
T ss_dssp TTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTCEEE
T ss_pred hhCCCCcEEEEEecCCCceEEcCCccccccccCHHHHHHHHHHCCCEEE
Confidence 7899999999976211 23477777777777653
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Back Show alignment and structure
Probab=90.53 E-value=0.89 Score=29.80 Aligned_cols=52 Identities=15% Similarity=0.101 Sum_probs=30.9
Q ss_pred eeccCCcEEEEEcCHH------------HHHHH----HhhhccCCceeEEeecCCCCcCcceEEEEEec
Q 045201 3 RILRPEGAVIIRDQAD------------VLVKV----RKIVGGMRWNTKIIDHEDGPLVTEKILFAVKR 55 (66)
Q Consensus 3 RILRP~G~vIiRD~~~------------vi~~v----~~i~~~l~W~~~~~~~e~~~~~~e~iLi~~K~ 55 (66)
|.|||||.+++-|-.- ....+ +.+...-+|++.+..+- |....+++++++|+
T Consensus 158 ~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~-g~~~~DG~~i~~~~ 225 (248)
T 3tfw_A 158 RYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATALQTV-GTKGWDGFTLAWVN 225 (248)
T ss_dssp HTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEC-STTCSEEEEEEEEC
T ss_pred HhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEeecC-CCCCCCeeEEEEEe
Confidence 6899999999865431 12223 33344556776554222 21235889999986
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Back Show alignment and structure
Probab=90.11 E-value=0.13 Score=30.32 Aligned_cols=52 Identities=13% Similarity=0.246 Sum_probs=28.0
Q ss_pred eeccCCcEEEEEcC-HHHHHHHHhhhccCCcee-EEeecC-CCCcCcceEEEEEec
Q 045201 3 RILRPEGAVIIRDQ-ADVLVKVRKIVGGMRWNT-KIIDHE-DGPLVTEKILFAVKR 55 (66)
Q Consensus 3 RILRP~G~vIiRD~-~~vi~~v~~i~~~l~W~~-~~~~~e-~~~~~~e~iLi~~K~ 55 (66)
|+|+|||.+++-.- .+-...+.+.+.. .|.. .+.... ......|..++|++.
T Consensus 124 ~~L~~gG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (180)
T 1ej0_A 124 DVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKVKVRKPDSSRARSREVYIVATGR 178 (180)
T ss_dssp HHEEEEEEEEEEEESSTTHHHHHHHHHH-HEEEEEEECCTTSCTTCCEEEEEEEEE
T ss_pred HHcCCCcEEEEEEecCCcHHHHHHHHHH-hhhhEEeecCCcccccCceEEEEEccC
Confidence 68999999999532 1222333333333 3653 222222 222346888888763
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Back Show alignment and structure
Probab=89.83 E-value=0.26 Score=33.07 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=35.5
Q ss_pred eeccCCcEEEEEcCH---------------------------------------HHHHHHHhhhccCCceeEEeecCCCC
Q 045201 3 RILRPEGAVIIRDQA---------------------------------------DVLVKVRKIVGGMRWNTKIIDHEDGP 43 (66)
Q Consensus 3 RILRP~G~vIiRD~~---------------------------------------~vi~~v~~i~~~l~W~~~~~~~e~~~ 43 (66)
|.|+|||.+++.+-. ...+++.+++..-.++....... .
T Consensus 215 ~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~--~ 292 (305)
T 3ocj_A 215 QALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFEDD--R 292 (305)
T ss_dssp HHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHHHHHHHTTCEEEEEECC--T
T ss_pred HhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHHHHHHHCCCEEEEEEcc--c
Confidence 689999999998711 24778888999889986433322 2
Q ss_pred cCcceEEEEEec
Q 045201 44 LVTEKILFAVKR 55 (66)
Q Consensus 44 ~~~e~iLi~~K~ 55 (66)
...-..++++|+
T Consensus 293 ~~~~~~v~a~Kp 304 (305)
T 3ocj_A 293 ARLFPTVIARKP 304 (305)
T ss_dssp TSSSCEEEEECC
T ss_pred CceeeEEEEecC
Confidence 234567888874
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Back Show alignment and structure
Probab=89.49 E-value=0.94 Score=29.25 Aligned_cols=58 Identities=10% Similarity=0.017 Sum_probs=35.2
Q ss_pred ceeccCCcEEEEEcC---HHHHHHHHhhhccCCceeEEee--cCCCCcCcceEEEEEecceec
Q 045201 2 DRILRPEGAVIIRDQ---ADVLVKVRKIVGGMRWNTKIID--HEDGPLVTEKILFAVKRYWVT 59 (66)
Q Consensus 2 DRILRP~G~vIiRD~---~~vi~~v~~i~~~l~W~~~~~~--~e~~~~~~e~iLi~~K~~W~~ 59 (66)
-|.|+|||.+++-+. .+-+.++.+.+....+...... .-........+++++|.=..|
T Consensus 161 ~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~k~~~~~ 223 (240)
T 1xdz_A 161 LPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKIKNTP 223 (240)
T ss_dssp GGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEECSCCC
T ss_pred HHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEEEEecCCCC
Confidence 378999999998764 3445566677777788653211 111112345677777764443
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Back Show alignment and structure
Probab=89.44 E-value=0.44 Score=29.90 Aligned_cols=37 Identities=8% Similarity=-0.068 Sum_probs=21.8
Q ss_pred HHHHHHhhhccCCceeE-EeecC----CCCcCcceEEEEEec
Q 045201 19 VLVKVRKIVGGMRWNTK-IIDHE----DGPLVTEKILFAVKR 55 (66)
Q Consensus 19 vi~~v~~i~~~l~W~~~-~~~~e----~~~~~~e~iLi~~K~ 55 (66)
..+++++++..-.++.. +...- .++....-+++|+|+
T Consensus 204 ~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK~ 245 (246)
T 1y8c_A 204 KEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKLG 245 (246)
T ss_dssp CHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEEC
T ss_pred CHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEec
Confidence 56788888888888754 32221 111223457788874
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Back Show alignment and structure
Probab=89.29 E-value=0.36 Score=31.02 Aligned_cols=32 Identities=9% Similarity=0.133 Sum_probs=23.9
Q ss_pred eeccCCcEEEEE-cCHHHHHHHHhhhccCCcee
Q 045201 3 RILRPEGAVIIR-DQADVLVKVRKIVGGMRWNT 34 (66)
Q Consensus 3 RILRP~G~vIiR-D~~~vi~~v~~i~~~l~W~~ 34 (66)
|+|+|||.+++. |..+..+.+...+....|..
T Consensus 141 ~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~ 173 (213)
T 2fca_A 141 EVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLL 173 (213)
T ss_dssp HHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEE
T ss_pred HHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCcc
Confidence 689999999987 56667777776666656653
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Back Show alignment and structure
Probab=89.21 E-value=0.45 Score=31.12 Aligned_cols=48 Identities=17% Similarity=0.136 Sum_probs=28.3
Q ss_pred eeccCCcEEEEEcCH------------HHHHHHHhhhccCCce----eEEeecCCCCcCcceEEEEEecc
Q 045201 3 RILRPEGAVIIRDQA------------DVLVKVRKIVGGMRWN----TKIIDHEDGPLVTEKILFAVKRY 56 (66)
Q Consensus 3 RILRP~G~vIiRD~~------------~vi~~v~~i~~~l~W~----~~~~~~e~~~~~~e~iLi~~K~~ 56 (66)
|.|||||.+++-|-. .....++++...++++ +.+... .+++++++|.+
T Consensus 151 ~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~------gdGl~~~~~~~ 214 (221)
T 3dr5_A 151 PLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLPL------GAGLTVVTKAL 214 (221)
T ss_dssp HHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEESS------TTCEEEEEECC
T ss_pred HHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEeec------cchHHHHHHHH
Confidence 689999999984421 1122344444444443 333322 36799999876
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Back Show alignment and structure
Probab=89.16 E-value=0.5 Score=29.50 Aligned_cols=33 Identities=21% Similarity=0.421 Sum_probs=26.8
Q ss_pred eeccCCcEEEEEc-CHHHHHHHHhhhccCCceeE
Q 045201 3 RILRPEGAVIIRD-QADVLVKVRKIVGGMRWNTK 35 (66)
Q Consensus 3 RILRP~G~vIiRD-~~~vi~~v~~i~~~l~W~~~ 35 (66)
|.|+|||.+++-+ ..+-..++.+++....|++.
T Consensus 130 ~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~ 163 (204)
T 3e05_A 130 RRLKSEGVIVLNAVTLDTLTKAVEFLEDHGYMVE 163 (204)
T ss_dssp HHCCTTCEEEEEECBHHHHHHHHHHHHHTTCEEE
T ss_pred HhcCCCeEEEEEecccccHHHHHHHHHHCCCcee
Confidence 6899999999984 45778888888888888644
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Back Show alignment and structure
Probab=89.13 E-value=0.57 Score=30.18 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=30.8
Q ss_pred eeccCCcEEEEEcC------------HHHHHH----HHhhhccCCceeEEeecCCCCcCcceEEEEEecc
Q 045201 3 RILRPEGAVIIRDQ------------ADVLVK----VRKIVGGMRWNTKIIDHEDGPLVTEKILFAVKRY 56 (66)
Q Consensus 3 RILRP~G~vIiRD~------------~~vi~~----v~~i~~~l~W~~~~~~~e~~~~~~e~iLi~~K~~ 56 (66)
|.|+|||.+++-+- ...... .+.+...-++++...... +.+.+++|++
T Consensus 169 ~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~------~g~~~~~~~~ 232 (239)
T 2hnk_A 169 KLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVYNDSLVDVSLVPIA------DGVSLVRKRL 232 (239)
T ss_dssp HHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEECST------TCEEEEEECC
T ss_pred HHcCCCeEEEEEccccCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEEcC------CceEeeeehh
Confidence 67999999999761 122222 334445566776665443 4589999976
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Back Show alignment and structure
Probab=89.05 E-value=0.67 Score=30.03 Aligned_cols=47 Identities=17% Similarity=0.300 Sum_probs=28.4
Q ss_pred eeccCCcEEEEEcCH------------HHHHHHHh----hhccCCceeEEeecCCCCcCcceEEEEEec
Q 045201 3 RILRPEGAVIIRDQA------------DVLVKVRK----IVGGMRWNTKIIDHEDGPLVTEKILFAVKR 55 (66)
Q Consensus 3 RILRP~G~vIiRD~~------------~vi~~v~~----i~~~l~W~~~~~~~e~~~~~~e~iLi~~K~ 55 (66)
|.|+|||.+++-|.. .....+++ +...-++++.+... .+++.+++|+
T Consensus 170 ~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~------~dG~~~~~~~ 232 (232)
T 3cbg_A 170 NLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIPL------GDGMTLALKK 232 (232)
T ss_dssp HTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEEEECS------BTCEEEEEEC
T ss_pred HHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEEEEEc------CCeEEEEEeC
Confidence 689999999995422 12223333 33455677665433 2468888874
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Back Show alignment and structure
Probab=88.85 E-value=0.26 Score=30.82 Aligned_cols=49 Identities=14% Similarity=0.066 Sum_probs=33.1
Q ss_pred eeccCCcEEEEEcCH-------------HHHHHHHhhhccCCceeE-EeecCCCCcCcceEEEEEec
Q 045201 3 RILRPEGAVIIRDQA-------------DVLVKVRKIVGGMRWNTK-IIDHEDGPLVTEKILFAVKR 55 (66)
Q Consensus 3 RILRP~G~vIiRD~~-------------~vi~~v~~i~~~l~W~~~-~~~~e~~~~~~e~iLi~~K~ 55 (66)
|.|+|||.+++-+-. ...+++..++....++.. ..+... ..-+++++|.
T Consensus 131 ~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~----~~~~~~~~k~ 193 (219)
T 3dh0_A 131 RVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGK----YCFGVYAMIV 193 (219)
T ss_dssp HHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEETT----TEEEEEEECC
T ss_pred HHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeCC----ceEEEEEEec
Confidence 789999999997621 235778888888888753 322221 3567777774
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Back Show alignment and structure
Probab=88.79 E-value=0.36 Score=29.92 Aligned_cols=50 Identities=8% Similarity=0.039 Sum_probs=34.3
Q ss_pred eeccCCcEEEEEcCH----------------HHHHHHHhhhccCCceeEEeecCCCCcCcceEEEEEe
Q 045201 3 RILRPEGAVIIRDQA----------------DVLVKVRKIVGGMRWNTKIIDHEDGPLVTEKILFAVK 54 (66)
Q Consensus 3 RILRP~G~vIiRD~~----------------~vi~~v~~i~~~l~W~~~~~~~e~~~~~~e~iLi~~K 54 (66)
|.|+|||.+++-+-. -..+++++++....++........+ .+...|...|
T Consensus 129 ~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~--~p~~~l~~~~ 194 (203)
T 3h2b_A 129 MAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPR--FPHAYLTAEA 194 (203)
T ss_dssp HTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTT--SSEEEEEEEE
T ss_pred HHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCC--Ccchhhhhhh
Confidence 789999999997622 2368888999999998764444433 3444555444
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Back Show alignment and structure
Probab=88.69 E-value=0.16 Score=35.59 Aligned_cols=50 Identities=14% Similarity=0.313 Sum_probs=31.3
Q ss_pred eeccCCcEEEEEc-CHHHHHHHHhhhccCCc-eeEEeecCCCCcCcceEEEEEe
Q 045201 3 RILRPEGAVIIRD-QADVLVKVRKIVGGMRW-NTKIIDHEDGPLVTEKILFAVK 54 (66)
Q Consensus 3 RILRP~G~vIiRD-~~~vi~~v~~i~~~l~W-~~~~~~~e~~~~~~e~iLi~~K 54 (66)
|.|+|||.+++-. ...-..++.++++...+ .+....+ ...+.|.+|+|+.
T Consensus 159 r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v~~~as--r~~s~e~~lv~~~ 210 (290)
T 2xyq_A 159 QKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFVTNV--NASSSEAFLIGAN 210 (290)
T ss_dssp HHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEEEGG--GTTSSCEEEEEEE
T ss_pred HhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcEEEEEEc--CCCchheEEecCC
Confidence 6799999999844 11223466677777645 3444412 2224688998876
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Back Show alignment and structure
Probab=88.45 E-value=0.85 Score=30.25 Aligned_cols=54 Identities=22% Similarity=0.212 Sum_probs=36.1
Q ss_pred ceeccCCcEEEEE-------------------cC---HHHHHHHHhhhccCCceeEEee--cCCCCc-CcceEEEEEec
Q 045201 2 DRILRPEGAVIIR-------------------DQ---ADVLVKVRKIVGGMRWNTKIID--HEDGPL-VTEKILFAVKR 55 (66)
Q Consensus 2 DRILRP~G~vIiR-------------------D~---~~vi~~v~~i~~~l~W~~~~~~--~e~~~~-~~e~iLi~~K~ 55 (66)
-|+|+|||.+++- |. ...++++..++.+..|.+.-.+ .-.++. +-|-++.++|.
T Consensus 124 ~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~pi~g~~gn~e~l~~~~~~ 202 (232)
T 3opn_A 124 YEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPIKGGAGNVEFLVHLLKD 202 (232)
T ss_dssp HHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECSSCBTTTBCCEEEEEEES
T ss_pred HHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEccCCCCCCCHHHHHHHhhc
Confidence 3789999999874 11 1356788888988899865332 222333 35778888873
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Back Show alignment and structure
Probab=88.45 E-value=0.76 Score=28.64 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=31.7
Q ss_pred ceeccCCcEEEEEcCH----H---------------------------HHHHHHhhhccCCceeEEeecCCCCcCcceEE
Q 045201 2 DRILRPEGAVIIRDQA----D---------------------------VLVKVRKIVGGMRWNTKIIDHEDGPLVTEKIL 50 (66)
Q Consensus 2 DRILRP~G~vIiRD~~----~---------------------------vi~~v~~i~~~l~W~~~~~~~e~~~~~~e~iL 50 (66)
-|+|+|||.+++.+.. . ..+++++++..-.+++......+ -.=++
T Consensus 132 ~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~~----~~w~~ 207 (220)
T 3hnr_A 132 SQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTRLNH----FVWVM 207 (220)
T ss_dssp HHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEEECSS----SEEEE
T ss_pred HHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEeeccc----eEEEE
Confidence 3789999999998621 1 23677888888888765443331 23355
Q ss_pred EEEe
Q 045201 51 FAVK 54 (66)
Q Consensus 51 i~~K 54 (66)
.++|
T Consensus 208 ~~~~ 211 (220)
T 3hnr_A 208 EATK 211 (220)
T ss_dssp EEEE
T ss_pred eehh
Confidence 5555
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Back Show alignment and structure
Probab=88.28 E-value=0.76 Score=28.99 Aligned_cols=47 Identities=21% Similarity=0.279 Sum_probs=28.5
Q ss_pred eeccCCcEEEEEcC------------HHHHHHHHh----hhccCCceeEEeecCCCCcCcceEEEEEec
Q 045201 3 RILRPEGAVIIRDQ------------ADVLVKVRK----IVGGMRWNTKIIDHEDGPLVTEKILFAVKR 55 (66)
Q Consensus 3 RILRP~G~vIiRD~------------~~vi~~v~~----i~~~l~W~~~~~~~e~~~~~~e~iLi~~K~ 55 (66)
|.|+|||.+++-|. ......+++ +...=++++.+.... +++++++|.
T Consensus 167 ~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~------dGl~~~~k~ 229 (229)
T 2avd_A 167 QLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLG------DGLTLAFKI 229 (229)
T ss_dssp HHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECST------TCEEEEEEC
T ss_pred HHcCCCeEEEEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEEEEecC------CceEEEEEC
Confidence 67999999999542 222333333 334456666655332 568888874
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Back Show alignment and structure
Probab=88.08 E-value=0.22 Score=30.47 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=22.0
Q ss_pred ceeccCCcEEEEEcCH--------------HHHHHHHhhhccCCceeEE
Q 045201 2 DRILRPEGAVIIRDQA--------------DVLVKVRKIVGGMRWNTKI 36 (66)
Q Consensus 2 DRILRP~G~vIiRD~~--------------~vi~~v~~i~~~l~W~~~~ 36 (66)
-|+|+|||.+++-+.. -..+++++++.. |+...
T Consensus 123 ~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~ 169 (199)
T 2xvm_A 123 QRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVK 169 (199)
T ss_dssp HHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEE
T ss_pred HHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEE
Confidence 3789999998775421 134667777777 77543
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Back Show alignment and structure
Probab=87.71 E-value=0.57 Score=29.61 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=25.5
Q ss_pred eeccCCcEEEEEc-CHHHHHHHHhhhccCCceeE
Q 045201 3 RILRPEGAVIIRD-QADVLVKVRKIVGGMRWNTK 35 (66)
Q Consensus 3 RILRP~G~vIiRD-~~~vi~~v~~i~~~l~W~~~ 35 (66)
|+|+|||.+++.- ..+....+.+++....|...
T Consensus 144 ~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~ 177 (214)
T 1yzh_A 144 RILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLN 177 (214)
T ss_dssp HHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred HHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeee
Confidence 6899999999975 55677788777776677653
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Back Show alignment and structure
Probab=87.66 E-value=0.32 Score=29.92 Aligned_cols=13 Identities=38% Similarity=0.606 Sum_probs=11.7
Q ss_pred eeccCCcEEEEEc
Q 045201 3 RILRPEGAVIIRD 15 (66)
Q Consensus 3 RILRP~G~vIiRD 15 (66)
|+|+|||.++|-+
T Consensus 136 ~~L~pgG~l~~~~ 148 (219)
T 3dlc_A 136 RILKSGGKTYIGG 148 (219)
T ss_dssp HHEEEEEEEEEEE
T ss_pred HhCCCCCEEEEEe
Confidence 7899999999975
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Back Show alignment and structure
Probab=87.34 E-value=0.53 Score=28.31 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=24.8
Q ss_pred eeccCCcEEEEEcCHH---HHHHHHhhhccCCceeEE
Q 045201 3 RILRPEGAVIIRDQAD---VLVKVRKIVGGMRWNTKI 36 (66)
Q Consensus 3 RILRP~G~vIiRD~~~---vi~~v~~i~~~l~W~~~~ 36 (66)
|+|+|+|.+++-.... ...++.+++....++..-
T Consensus 135 ~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 171 (195)
T 3cgg_A 135 RALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELEN 171 (195)
T ss_dssp HHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEE
T ss_pred HHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEee
Confidence 7899999999965332 366777777777887643
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Back Show alignment and structure
Probab=87.28 E-value=0.55 Score=30.02 Aligned_cols=51 Identities=18% Similarity=0.126 Sum_probs=27.1
Q ss_pred eeccCCcEEEEEc--CHHHHHHHHhhhccCCce-eEEeecC-CCCcCcceEEEEEec
Q 045201 3 RILRPEGAVIIRD--QADVLVKVRKIVGGMRWN-TKIIDHE-DGPLVTEKILFAVKR 55 (66)
Q Consensus 3 RILRP~G~vIiRD--~~~vi~~v~~i~~~l~W~-~~~~~~e-~~~~~~e~iLi~~K~ 55 (66)
|.|||||.+++-- ..+ ...+...++.. +. +.+..+. .-+.+.|..++|++.
T Consensus 127 ~~LkpGG~lv~k~~~~~~-~~~~~~~l~~~-F~~v~~~kP~asR~~s~E~y~v~~~~ 181 (191)
T 3dou_A 127 RYLRNGGNVLLKQFQGDM-TNDFIAIWRKN-FSSYKISKPPASRGSSSEIYIMFFGF 181 (191)
T ss_dssp HHEEEEEEEEEEEECSTH-HHHHHHHHGGG-EEEEEEECC------CCEEEEEEEEE
T ss_pred HHccCCCEEEEEEcCCCC-HHHHHHHHHHh-cCEEEEECCCCccCCCceEEEEEeee
Confidence 6899999998643 222 23444444432 33 3333222 222357999999763
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Back Show alignment and structure
Probab=87.23 E-value=1.4 Score=27.56 Aligned_cols=53 Identities=6% Similarity=0.087 Sum_probs=33.9
Q ss_pred eeccCCcEEEEEcCHHH----------------------HHHHH----hhhccCCceeEEeecCCC---CcCcceEEEEE
Q 045201 3 RILRPEGAVIIRDQADV----------------------LVKVR----KIVGGMRWNTKIIDHEDG---PLVTEKILFAV 53 (66)
Q Consensus 3 RILRP~G~vIiRD~~~v----------------------i~~v~----~i~~~l~W~~~~~~~e~~---~~~~e~iLi~~ 53 (66)
|.|+|||.+|+-+..+. ..+++ .++..-.+++......++ -...-+|-+|+
T Consensus 129 ~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~~~~~g~~~~~~g~~~qi~~~~ 208 (219)
T 3jwg_A 129 EFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVRFLQIGEIDDEFGSPTQMGVFT 208 (219)
T ss_dssp TTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEEEEEEESCCCTTSCCSEEEEEEE
T ss_pred HhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEEEEEecCCccccCCCCeEEEEEe
Confidence 78999998887654432 23333 777777888765522221 22368899999
Q ss_pred ec
Q 045201 54 KR 55 (66)
Q Consensus 54 K~ 55 (66)
|.
T Consensus 209 ~~ 210 (219)
T 3jwg_A 209 LG 210 (219)
T ss_dssp EC
T ss_pred cc
Confidence 85
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Back Show alignment and structure
Probab=87.23 E-value=0.84 Score=29.91 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=28.6
Q ss_pred eeccCCcEEEEEcCHHHHHHHHhhhccCCceeE
Q 045201 3 RILRPEGAVIIRDQADVLVKVRKIVGGMRWNTK 35 (66)
Q Consensus 3 RILRP~G~vIiRD~~~vi~~v~~i~~~l~W~~~ 35 (66)
|.|+|||.+++=-..+-+.++...+....|...
T Consensus 164 ~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~ 196 (259)
T 3lpm_A 164 SLLKQGGKANFVHRPERLLDIIDIMRKYRLEPK 196 (259)
T ss_dssp HHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEE
T ss_pred HHccCCcEEEEEEcHHHHHHHHHHHHHCCCceE
Confidence 689999999998778888899999998888764
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Back Show alignment and structure
Probab=86.67 E-value=0.42 Score=28.69 Aligned_cols=33 Identities=12% Similarity=0.342 Sum_probs=25.8
Q ss_pred eeccCCcEEEEEc-CHHHHHHHHhhhccCCceeE
Q 045201 3 RILRPEGAVIIRD-QADVLVKVRKIVGGMRWNTK 35 (66)
Q Consensus 3 RILRP~G~vIiRD-~~~vi~~v~~i~~~l~W~~~ 35 (66)
|+|+|||.+++-+ ..+...++.+++....|++.
T Consensus 122 ~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~ 155 (192)
T 1l3i_A 122 DKLKPGGRIIVTAILLETKFEAMECLRDLGFDVN 155 (192)
T ss_dssp HTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCE
T ss_pred HhcCCCcEEEEEecCcchHHHHHHHHHHCCCceE
Confidence 6899999999865 46777888888887777544
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Back Show alignment and structure
Probab=86.62 E-value=1.1 Score=28.83 Aligned_cols=13 Identities=31% Similarity=0.598 Sum_probs=11.2
Q ss_pred ceeccCCcEEEEE
Q 045201 2 DRILRPEGAVIIR 14 (66)
Q Consensus 2 DRILRP~G~vIiR 14 (66)
-|.|+|||.+++-
T Consensus 148 ~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 148 EFFLKEKGEVVIM 160 (210)
T ss_dssp HHHEEEEEEEEEE
T ss_pred HHHhCCCCEEEEE
Confidence 3789999999985
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Back Show alignment and structure
Probab=86.60 E-value=0.99 Score=29.45 Aligned_cols=13 Identities=15% Similarity=0.437 Sum_probs=11.3
Q ss_pred eeccCCcEEEEEc
Q 045201 3 RILRPEGAVIIRD 15 (66)
Q Consensus 3 RILRP~G~vIiRD 15 (66)
|.|||||.+++.+
T Consensus 169 ~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 169 KLVKVGGIVAYDN 181 (237)
T ss_dssp HHEEEEEEEEEEC
T ss_pred HhcCCCeEEEEec
Confidence 5799999999975
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Back Show alignment and structure
Probab=86.41 E-value=0.46 Score=30.54 Aligned_cols=51 Identities=14% Similarity=0.082 Sum_probs=27.7
Q ss_pred eeccCCcEEEE----EcCHH-------HHHHHHhhhccCCceeE-EeecCCCCcCcceEEEEEec
Q 045201 3 RILRPEGAVII----RDQAD-------VLVKVRKIVGGMRWNTK-IIDHEDGPLVTEKILFAVKR 55 (66)
Q Consensus 3 RILRP~G~vIi----RD~~~-------vi~~v~~i~~~l~W~~~-~~~~e~~~~~~e~iLi~~K~ 55 (66)
|.|+|||.+++ +.... .-..++ ++.+..++.. ..+.. ......-+++++|+
T Consensus 166 ~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~~~-~~~~~~~~v~~~k~ 228 (230)
T 1fbn_A 166 WFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVDIE-PFEKDHVMFVGIWE 228 (230)
T ss_dssp HHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEECT-TTSTTEEEEEEEEC
T ss_pred HhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEccC-CCccceEEEEEEeC
Confidence 68999999999 32111 225555 5555556543 22222 11123567788773
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Back Show alignment and structure
Probab=85.98 E-value=1.3 Score=29.31 Aligned_cols=13 Identities=8% Similarity=0.281 Sum_probs=11.4
Q ss_pred eeccCCcEEEEEc
Q 045201 3 RILRPEGAVIIRD 15 (66)
Q Consensus 3 RILRP~G~vIiRD 15 (66)
|.|+|||.+++.+
T Consensus 178 ~~LkpGG~lv~d~ 190 (247)
T 1sui_A 178 DLVKVGGVIGYDN 190 (247)
T ss_dssp HHBCTTCCEEEEC
T ss_pred HhCCCCeEEEEec
Confidence 6799999999865
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Back Show alignment and structure
Probab=85.76 E-value=0.76 Score=28.85 Aligned_cols=13 Identities=23% Similarity=0.304 Sum_probs=11.4
Q ss_pred eeccCCcEEEEEc
Q 045201 3 RILRPEGAVIIRD 15 (66)
Q Consensus 3 RILRP~G~vIiRD 15 (66)
|.|+|||.+++-|
T Consensus 148 ~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 148 RCLAKNALLIAVN 160 (210)
T ss_dssp GGEEEEEEEEEES
T ss_pred HhcCCCeEEEEEC
Confidence 7899999999965
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Back Show alignment and structure
Probab=85.75 E-value=0.44 Score=30.82 Aligned_cols=33 Identities=0% Similarity=-0.016 Sum_probs=24.1
Q ss_pred HHHHHhhhccCCceeEEeecCCCCcCcceEEEEEec
Q 045201 20 LVKVRKIVGGMRWNTKIIDHEDGPLVTEKILFAVKR 55 (66)
Q Consensus 20 i~~v~~i~~~l~W~~~~~~~e~~~~~~e~iLi~~K~ 55 (66)
.+++++++..-.+++.-..... ....+++|+|.
T Consensus 217 ~~el~~ll~~aGF~v~~~~~~~---~~~~~~va~K~ 249 (263)
T 3pfg_A 217 REQYERAFTAAGLSVEFMPGGP---SGRGLFTGLPG 249 (263)
T ss_dssp HHHHHHHHHHTTEEEEEESSTT---TSSCEEEEEEC
T ss_pred HHHHHHHHHHCCCEEEEeeCCC---CCceeEEEecC
Confidence 6889999999999865443222 34679999995
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Back Show alignment and structure
Probab=85.02 E-value=0.29 Score=29.49 Aligned_cols=48 Identities=15% Similarity=0.166 Sum_probs=25.8
Q ss_pred eeccCCcEEEEEcCHH-HHHHHHhhhccCCceeEEeecCCCCcCcceEEEEEe
Q 045201 3 RILRPEGAVIIRDQAD-VLVKVRKIVGGMRWNTKIIDHEDGPLVTEKILFAVK 54 (66)
Q Consensus 3 RILRP~G~vIiRD~~~-vi~~v~~i~~~l~W~~~~~~~e~~~~~~e~iLi~~K 54 (66)
|+|+|||.+++-+... ...++.+.+...-+++.+....+ .-.++.++|
T Consensus 145 ~~L~~gG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~k 193 (194)
T 1dus_A 145 ELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIKG----GYRVLKSKK 193 (194)
T ss_dssp HHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEET----TEEEEEEEC
T ss_pred HHcCCCCEEEEEECCCCChHHHHHHHHHHhcceEEEecCC----cEEEEEEee
Confidence 6899999999876543 33334444444323344433332 234555554
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Back Show alignment and structure
Probab=84.42 E-value=2.2 Score=29.94 Aligned_cols=53 Identities=21% Similarity=0.157 Sum_probs=36.7
Q ss_pred ceeccCCcEEEEEcC----------------------HHHHHHHHhhhccCCceeE--EeecCCCCcC-cceEEEEEe
Q 045201 2 DRILRPEGAVIIRDQ----------------------ADVLVKVRKIVGGMRWNTK--IIDHEDGPLV-TEKILFAVK 54 (66)
Q Consensus 2 DRILRP~G~vIiRD~----------------------~~vi~~v~~i~~~l~W~~~--~~~~e~~~~~-~e~iLi~~K 54 (66)
-|+|+|||.+++=.+ ..+++++..++.+..|.+. ......|+.+ .|=++.++|
T Consensus 172 ~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi~g~~gn~e~l~~~~~ 249 (291)
T 3hp7_A 172 AKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPIQGGHGNIEFLAHLEK 249 (291)
T ss_dssp HHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSSCCGGGCCCEEEEEEE
T ss_pred HHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCcCHHHHHHhhh
Confidence 489999999987511 2478889999999999864 2233345543 466777766
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Back Show alignment and structure
Probab=84.37 E-value=0.42 Score=32.56 Aligned_cols=52 Identities=4% Similarity=0.024 Sum_probs=28.4
Q ss_pred ceeccCCc--EEEEE----cCHHHHHHHHhhhccCCceeEEeecCCCCcCcceEEEEEe
Q 045201 2 DRILRPEG--AVIIR----DQADVLVKVRKIVGGMRWNTKIIDHEDGPLVTEKILFAVK 54 (66)
Q Consensus 2 DRILRP~G--~vIiR----D~~~vi~~v~~i~~~l~W~~~~~~~e~~~~~~e~iLi~~K 54 (66)
.|+|+||| .+++. +..++++.++.+...+. .+.+...-.-....|..++|.+
T Consensus 170 ~r~LkpGG~~~fv~kv~~~~~~~~~~~l~~l~~~f~-~v~~~k~~sR~~s~E~y~v~~~ 227 (265)
T 2oxt_A 170 EKWKVKNPSADFVVKVLCPYSVEVMERLSVMQRKWG-GGLVRNPYSRNSTHEMYFTSRA 227 (265)
T ss_dssp HHHHHHCTTCEEEEEESCTTSHHHHHHHHHHHHHHC-CEEECCTTSCTTCCCEEEESSC
T ss_pred HHHhccCCCeEEEEEeCCCCChhHHHHHHHHHHHcC-CEEEEEecccCCCccEEEEecC
Confidence 37899999 88885 45544455554443222 2233322222234677777754
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Back Show alignment and structure
Probab=84.01 E-value=0.43 Score=31.55 Aligned_cols=29 Identities=17% Similarity=0.052 Sum_probs=22.4
Q ss_pred eeccCCcEEEEE-cCHHHHHHHHhhhccCC
Q 045201 3 RILRPEGAVIIR-DQADVLVKVRKIVGGMR 31 (66)
Q Consensus 3 RILRP~G~vIiR-D~~~vi~~v~~i~~~l~ 31 (66)
|+|+|||.+++. |..+..+.+.+.+..-.
T Consensus 156 ~~LkpGG~l~~~td~~~~~~~~~~~l~~~~ 185 (235)
T 3ckk_A 156 YVLRVGGLVYTITDVLELHDWMCTHFEEHP 185 (235)
T ss_dssp HHEEEEEEEEEEESCHHHHHHHHHHHHTST
T ss_pred HHCCCCCEEEEEeCCHHHHHHHHHHHHHCC
Confidence 789999999986 77777777777665544
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Back Show alignment and structure
Probab=83.89 E-value=0.8 Score=28.10 Aligned_cols=49 Identities=18% Similarity=0.181 Sum_probs=27.5
Q ss_pred eeccCCcEEEEEcCHHHHHHHHhhh--ccCCceeEEeecCCCCcCcceEEEEEe
Q 045201 3 RILRPEGAVIIRDQADVLVKVRKIV--GGMRWNTKIIDHEDGPLVTEKILFAVK 54 (66)
Q Consensus 3 RILRP~G~vIiRD~~~vi~~v~~i~--~~l~W~~~~~~~e~~~~~~e~iLi~~K 54 (66)
|+|+|||.+++.+-..- ...+.++ ....|........++. .--+++++|
T Consensus 147 ~~LkpgG~li~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 197 (215)
T 2pxx_A 147 RVLVPGGRFISMTSAAP-HFRTRHYAQAYYGWSLRHATYGSGF--HFHLYLMHK 197 (215)
T ss_dssp HHEEEEEEEEEEESCCH-HHHHHHHCCGGGCEEEEEEEESGGG--CEEEEEEEE
T ss_pred HhCcCCCEEEEEeCCCc-HHHHHHHhccccCcEEEEEEecCcc--eEEEEEEEe
Confidence 78999999999886331 1122333 3346876543333321 234666665
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Back Show alignment and structure
Probab=83.15 E-value=2.4 Score=28.56 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=32.7
Q ss_pred eeccCCcEEEEEc-----CHHHHHHHHhhhccCCceeEEeecCCC--CcCcceEEEEEecc
Q 045201 3 RILRPEGAVIIRD-----QADVLVKVRKIVGGMRWNTKIIDHEDG--PLVTEKILFAVKRY 56 (66)
Q Consensus 3 RILRP~G~vIiRD-----~~~vi~~v~~i~~~l~W~~~~~~~e~~--~~~~e~iLi~~K~~ 56 (66)
|.|+|||.+++.- ..+.+..+.+.+++.=-.+......-. +.+...+++|.|++
T Consensus 177 ~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~~~~ask~~ 237 (275)
T 1iy9_A 177 KALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTIGSKKY 237 (275)
T ss_dssp HHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEEEEEESSC
T ss_pred HhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEEEEecCcccCcceEEEEeeCCC
Confidence 6899999999973 244556665555555334444322211 12346788999874
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Back Show alignment and structure
Probab=83.15 E-value=1.5 Score=27.68 Aligned_cols=49 Identities=16% Similarity=0.178 Sum_probs=26.8
Q ss_pred eeccCCcEEEEEcCHH----------H-HHHHHhhhccCCceeE-EeecCCCCc-CcceEEEEEec
Q 045201 3 RILRPEGAVIIRDQAD----------V-LVKVRKIVGGMRWNTK-IIDHEDGPL-VTEKILFAVKR 55 (66)
Q Consensus 3 RILRP~G~vIiRD~~~----------v-i~~v~~i~~~l~W~~~-~~~~e~~~~-~~e~iLi~~K~ 55 (66)
|.|+|||.+++--... + -.+++++..+ ++.. ..+.. ++ ...-+++++|+
T Consensus 166 ~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--f~~~~~~~~~--~~~~~~~~~~~~~~ 227 (227)
T 1g8a_A 166 VYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEY--FEVIERLNLE--PYEKDHALFVVRKT 227 (227)
T ss_dssp HHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTT--SEEEEEEECT--TTSSSEEEEEEECC
T ss_pred HhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHHHhh--ceeeeEeccC--cccCCCEEEEEEeC
Confidence 7899999999842111 1 2456666444 7643 33332 22 23456777763
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Back Show alignment and structure
Probab=83.12 E-value=0.22 Score=37.34 Aligned_cols=33 Identities=18% Similarity=0.371 Sum_probs=27.9
Q ss_pred eeccCCcEEEEEcC------------------HHHHHHHHhhhccCCceeE
Q 045201 3 RILRPEGAVIIRDQ------------------ADVLVKVRKIVGGMRWNTK 35 (66)
Q Consensus 3 RILRP~G~vIiRD~------------------~~vi~~v~~i~~~l~W~~~ 35 (66)
|.|+|||.+||.|- ..+++.+++++..++|...
T Consensus 312 rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~tii~~lk~l~D~l~~~~~ 362 (419)
T 3sso_A 312 PHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLGLLKSLIDAIQHQEL 362 (419)
T ss_dssp GGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTSHHHHHHHHHHHHTGGGS
T ss_pred HhcCCCeEEEEEecccccCcccCCCccCCcchhHHHHHHHHHHHHhccccc
Confidence 78999999999643 4689999999999998753
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Back Show alignment and structure
Probab=82.59 E-value=0.76 Score=28.84 Aligned_cols=33 Identities=3% Similarity=0.018 Sum_probs=18.7
Q ss_pred HHHHHhhhccCCceeEEeecCCCCcCcceEEEEEec
Q 045201 20 LVKVRKIVGGMRWNTKIIDHEDGPLVTEKILFAVKR 55 (66)
Q Consensus 20 i~~v~~i~~~l~W~~~~~~~e~~~~~~e~iLi~~K~ 55 (66)
.+++++++..-.+++...... ....-+++|+|+
T Consensus 207 ~~~~~~ll~~aGF~v~~~~~~---~~~~~~~va~K~ 239 (239)
T 3bxo_A 207 QAEYEAAFTAAGLRVEYLEGG---PSGRGLFVGVPA 239 (239)
T ss_dssp HHHHHHHHHHTTEEEEEESST---TTSSCEEEEEEC
T ss_pred HHHHHHHHHHCCCEEEEeEcC---CCCceEEEEecC
Confidence 466777777777754433221 123567777773
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Back Show alignment and structure
Probab=82.56 E-value=0.36 Score=32.51 Aligned_cols=34 Identities=6% Similarity=0.193 Sum_probs=28.3
Q ss_pred eeccCCcEEEEEcCH-------HHHHHHHhhhccCCceeEE
Q 045201 3 RILRPEGAVIIRDQA-------DVLVKVRKIVGGMRWNTKI 36 (66)
Q Consensus 3 RILRP~G~vIiRD~~-------~vi~~v~~i~~~l~W~~~~ 36 (66)
|.|+|||.+++-+.. +.+.++.+.+....|++..
T Consensus 213 ~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 213 SIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp HHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred HHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence 689999999996553 5678889999999998765
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Back Show alignment and structure
Probab=81.99 E-value=2.1 Score=28.81 Aligned_cols=53 Identities=17% Similarity=0.068 Sum_probs=31.0
Q ss_pred eeccCCcEEEEEc-----CHHHHHHHHhhhccCCceeEEeecC-CCCcCcceEEEEEec
Q 045201 3 RILRPEGAVIIRD-----QADVLVKVRKIVGGMRWNTKIIDHE-DGPLVTEKILFAVKR 55 (66)
Q Consensus 3 RILRP~G~vIiRD-----~~~vi~~v~~i~~~l~W~~~~~~~e-~~~~~~e~iLi~~K~ 55 (66)
|.|+|||.+++.- ..+.+..+.+.++..--.+...... ....+...+++|.|+
T Consensus 181 ~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~g~~~~~~as~~ 239 (281)
T 1mjf_A 181 DALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVIGYASPWAFLVGVKG 239 (281)
T ss_dssp HHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEECCTTSSSSEEEEEEEES
T ss_pred HhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEEEEEecCCCCceEEEEEeeCC
Confidence 6899999999973 3455555555554443334432211 111235778999986
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Back Show alignment and structure
Probab=81.55 E-value=2.7 Score=26.72 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=29.0
Q ss_pred eeccCCcEEEEEcCHHH----------HHHHHhhhccCCceeEE-eecCCCCcCcceEEEEEe
Q 045201 3 RILRPEGAVIIRDQADV----------LVKVRKIVGGMRWNTKI-IDHEDGPLVTEKILFAVK 54 (66)
Q Consensus 3 RILRP~G~vIiRD~~~v----------i~~v~~i~~~l~W~~~~-~~~e~~~~~~e~iLi~~K 54 (66)
|.|+|||.+++--.... ..+-.+++....++..- ...+.-+ ...-++++++
T Consensus 170 ~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~-~~~~~v~~~~ 231 (233)
T 2ipx_A 170 TFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYE-RDHAVVVGVY 231 (233)
T ss_dssp HHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEEECTTTS-SSEEEEEEEE
T ss_pred HHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEEEecCCcc-CCcEEEEEEe
Confidence 68999999999533321 22224666777787543 3333222 2345666665
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Back Show alignment and structure
Probab=81.27 E-value=1.1 Score=28.55 Aligned_cols=33 Identities=6% Similarity=0.028 Sum_probs=26.1
Q ss_pred eeccCCcEEEEEc-CHHHHHHHHhhhccCCceeE
Q 045201 3 RILRPEGAVIIRD-QADVLVKVRKIVGGMRWNTK 35 (66)
Q Consensus 3 RILRP~G~vIiRD-~~~vi~~v~~i~~~l~W~~~ 35 (66)
|.|+|||.+++-. ..+-+.++.++++...++..
T Consensus 142 ~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~ 175 (204)
T 3njr_A 142 EWLAPGTRIVANAVTLESETLLTQLHARHGGQLL 175 (204)
T ss_dssp HHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEE
T ss_pred HhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEE
Confidence 6799999999976 56777888888877777653
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Back Show alignment and structure
Probab=81.25 E-value=0.64 Score=30.29 Aligned_cols=27 Identities=7% Similarity=0.117 Sum_probs=19.6
Q ss_pred eeccCCcEEEEEcC-HHHHHHHHhhhcc
Q 045201 3 RILRPEGAVIIRDQ-ADVLVKVRKIVGG 29 (66)
Q Consensus 3 RILRP~G~vIiRD~-~~vi~~v~~i~~~ 29 (66)
|+|+|||.+++.-+ .+..+.+..++.+
T Consensus 138 r~LkpGG~l~i~td~~~~~~~~~~~~~~ 165 (218)
T 3dxy_A 138 SKLQLGGVFHMATDWEPYAEHMLEVMSS 165 (218)
T ss_dssp HHEEEEEEEEEEESCHHHHHHHHHHHHT
T ss_pred HHcCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 68999999988754 5556666666544
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Back Show alignment and structure
Probab=80.98 E-value=0.87 Score=32.37 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=28.9
Q ss_pred eeccCCcEEEEEcCHHHHHHH-----HhhhccCCceeEEeecCCCCcCcceEEEEEec
Q 045201 3 RILRPEGAVIIRDQADVLVKV-----RKIVGGMRWNTKIIDHEDGPLVTEKILFAVKR 55 (66)
Q Consensus 3 RILRP~G~vIiRD~~~vi~~v-----~~i~~~l~W~~~~~~~e~~~~~~e~iLi~~K~ 55 (66)
|.|||||.+++++...+-.-+ ..... .|+.....+..+. ....+.+++|.
T Consensus 210 r~LkPGG~Lvv~~~~~~r~~l~~~v~~~~~~--gf~~~~~~~p~~~-v~N~vv~a~k~ 264 (298)
T 3fpf_A 210 RYVDTETRIIYRTYTGMRAILYAPVSDDDIT--GFRRAGVVLPSGK-VNNTSVLVFKC 264 (298)
T ss_dssp HHCCTTCEEEEEECCGGGGGSSCCCCTGGGT--TEEEEEEECCCTT-CCCEEEEEEEC
T ss_pred HHcCCCcEEEEEcCcchhhhccccCChhhhh--hhhheeEECCCCC-cCcEEEEEEcc
Confidence 789999999999964431110 11222 5665544333332 23668888774
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Back Show alignment and structure
Probab=80.97 E-value=0.8 Score=30.95 Aligned_cols=52 Identities=13% Similarity=0.233 Sum_probs=27.2
Q ss_pred eeccCCcEEEEEc----------CHHHHHHHHhhhccCCceeE-EeecCCCCc-CcceEEEEEecc
Q 045201 3 RILRPEGAVIIRD----------QADVLVKVRKIVGGMRWNTK-IIDHEDGPL-VTEKILFAVKRY 56 (66)
Q Consensus 3 RILRP~G~vIiRD----------~~~vi~~v~~i~~~l~W~~~-~~~~e~~~~-~~e~iLi~~K~~ 56 (66)
|.|+|||.+++-= ..++...+.+.+.+-..+.. ..+.+ |+ ...-+++++|++
T Consensus 169 ~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~--p~~~~h~~v~~~~~~ 232 (232)
T 3id6_C 169 FFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLD--PYDKDHAIVLSKYKG 232 (232)
T ss_dssp HHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEECT--TTCSSCEEEEEEEC-
T ss_pred HhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEeccC--CCcCceEEEEEEeCC
Confidence 5899999999741 11223334444433334332 22332 33 256788888764
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Back Show alignment and structure
Probab=80.91 E-value=1.3 Score=27.47 Aligned_cols=13 Identities=23% Similarity=0.621 Sum_probs=11.6
Q ss_pred eeccCCcEEEEEc
Q 045201 3 RILRPEGAVIIRD 15 (66)
Q Consensus 3 RILRP~G~vIiRD 15 (66)
|+|+|||.+++-+
T Consensus 129 ~~L~pgG~l~~~~ 141 (235)
T 3sm3_A 129 RVLKPGAYLYLVE 141 (235)
T ss_dssp HHEEEEEEEEEEE
T ss_pred HHcCCCeEEEEEE
Confidence 7899999999975
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Back Show alignment and structure
Probab=80.67 E-value=1.9 Score=25.72 Aligned_cols=32 Identities=6% Similarity=0.008 Sum_probs=23.1
Q ss_pred eeccCCcEEEEEcC-HHHHHHHHhhhccCCcee
Q 045201 3 RILRPEGAVIIRDQ-ADVLVKVRKIVGGMRWNT 34 (66)
Q Consensus 3 RILRP~G~vIiRD~-~~vi~~v~~i~~~l~W~~ 34 (66)
|.|+|||.+++-+- .+-...+..++.....+.
T Consensus 115 ~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~ 147 (178)
T 3hm2_A 115 KRLPVGGRLVANAVTVESEQMLWALRKQFGGTI 147 (178)
T ss_dssp HTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEE
T ss_pred HhcCCCCEEEEEeeccccHHHHHHHHHHcCCee
Confidence 68999999999764 455666666666665554
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Back Show alignment and structure
Probab=80.43 E-value=1.8 Score=29.58 Aligned_cols=54 Identities=13% Similarity=-0.001 Sum_probs=30.3
Q ss_pred eeccCCcEEEEEc-----CHHHHHHHHhhhccCCceeEEeecC--CCCcCcceEEEEEecc
Q 045201 3 RILRPEGAVIIRD-----QADVLVKVRKIVGGMRWNTKIIDHE--DGPLVTEKILFAVKRY 56 (66)
Q Consensus 3 RILRP~G~vIiRD-----~~~vi~~v~~i~~~l~W~~~~~~~e--~~~~~~e~iLi~~K~~ 56 (66)
|.|+|||.+++.- ..+.+..+.+.+.+.--.+...... .-|.+...+++|.|++
T Consensus 193 ~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~p~g~~~f~~as~~~ 253 (296)
T 1inl_A 193 DALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTFASKGI 253 (296)
T ss_dssp HHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEEEEEEESSC
T ss_pred HhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceEEEEeecCccCCCceEEEEecCCC
Confidence 6799999999973 2334444444443333344433211 1122456799999874
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Back Show alignment and structure
Probab=80.33 E-value=0.35 Score=31.89 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=22.6
Q ss_pred eeccCCcEEEEEcCHH----------------HHHHHHhhhccCCcee
Q 045201 3 RILRPEGAVIIRDQAD----------------VLVKVRKIVGGMRWNT 34 (66)
Q Consensus 3 RILRP~G~vIiRD~~~----------------vi~~v~~i~~~l~W~~ 34 (66)
|.|+|||.+|+.+... ..+++.+++..-..+.
T Consensus 185 r~LKPGG~li~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i 232 (263)
T 2a14_A 185 SLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDI 232 (263)
T ss_dssp TTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred HHcCCCcEEEEEEeecCccceeCCeEeeccccCHHHHHHHHHHCCCEE
Confidence 7899999999996211 3456777776666654
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Back Show alignment and structure
Probab=80.24 E-value=0.32 Score=32.80 Aligned_cols=14 Identities=29% Similarity=0.686 Sum_probs=12.2
Q ss_pred eeccCCcEEEEEcC
Q 045201 3 RILRPEGAVIIRDQ 16 (66)
Q Consensus 3 RILRP~G~vIiRD~ 16 (66)
|.|+|||.+|+.|.
T Consensus 166 ~~LkpGG~lii~e~ 179 (261)
T 4gek_A 166 QGLNPGGALVLSEK 179 (261)
T ss_dssp HHEEEEEEEEEEEE
T ss_pred HHcCCCcEEEEEec
Confidence 78999999999763
Homologous Structure Domains
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability
Query 66
d2a14a1 257
Indolethylamine N-methyltransferase, INMT {Human (
92.12
d1g8aa_ 227
Fibrillarin homologue {Archaeon Pyrococcus horikos
90.58
d2avda1 219
COMT domain-containing protein 1, COMTD1 {Human (H
90.51
d2fcaa1 204
tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil
90.03
d1nkva_ 245
Hypothetical Protein YjhP {Escherichia coli [TaxId
87.63
d1nv8a_ 271
N5-glutamine methyltransferase, HemK {Thermotoga m
85.73
d2g72a1 263
Phenylethanolamine N-methyltransferase, PNMTase {H
84.61
d1yzha1 204
tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep
83.52
d1p91a_ 268
rRNA methyltransferase RlmA {Escherichia coli [Tax
82.32
d1susa1 227
Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag
82.0
d2nxca1 254
PrmA-like protein TTHA0656 (TT0836) {Thermus therm
81.43
d1vl5a_ 231
Hypothetical protein BH2331 {Bacillus halodurans [
81.36
d2dloa1 35
Thyroid receptor interacting protein 6, TRIP6 {Hum
80.31
>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.12 E-value=0.066 Score=33.04 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=24.7
Q ss_pred ceeccCCcEEEEEcCHH----------------HHHHHHhhhccCCcee
Q 045201 2 DRILRPEGAVIIRDQAD----------------VLVKVRKIVGGMRWNT 34 (66)
Q Consensus 2 DRILRP~G~vIiRD~~~----------------vi~~v~~i~~~l~W~~ 34 (66)
-|.|+|||.+|+.+-.. ..+.+++++..-.+++
T Consensus 180 ~~~LkpGG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v 228 (257)
T d2a14a1 180 ASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDI 228 (257)
T ss_dssp HTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred HhccCCCcEEEEEEecccccceeccccccccCCCHHHHHHHHHHCCCEE
Confidence 37899999999976321 2577788888878864
>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=90.58 E-value=0.12 Score=33.24 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=32.2
Q ss_pred ceeccCCcEEEEEc----------CHHHHHHHHhhhccCCcee-EEeecCCCCcC-cceEEEEEec
Q 045201 2 DRILRPEGAVIIRD----------QADVLVKVRKIVGGMRWNT-KIIDHEDGPLV-TEKILFAVKR 55 (66)
Q Consensus 2 DRILRP~G~vIiRD----------~~~vi~~v~~i~~~l~W~~-~~~~~e~~~~~-~e~iLi~~K~ 55 (66)
.|.|+|||.++|-. ...+..++++++.. .++. ...+.+ |+. ..-+++|+|+
T Consensus 165 ~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~-gf~iie~i~L~--p~~~~H~~vv~rK~ 227 (227)
T d1g8aa_ 165 EVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSE-YFEVIERLNLE--PYEKDHALFVVRKT 227 (227)
T ss_dssp HHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHT-TSEEEEEEECT--TTSSSEEEEEEECC
T ss_pred HHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHc-CCEEEEEEcCC--CCCCceEEEEEEeC
Confidence 47899999999852 25666777777755 5553 233322 322 3467888874
>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}
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class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.51 E-value=0.21 Score=31.94 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=32.9
Q ss_pred eeccCCcEEEEEcCH----------------HHHHHHHhhhccCCceeEEeecCCCCcCcceEEEEEe
Q 045201 3 RILRPEGAVIIRDQA----------------DVLVKVRKIVGGMRWNTKIIDHEDGPLVTEKILFAVK 54 (66)
Q Consensus 3 RILRP~G~vIiRD~~----------------~vi~~v~~i~~~l~W~~~~~~~e~~~~~~e~iLi~~K 54 (66)
+.|||||.+|+-|-. .+-+..+.|.+.-+|.+.+.-.. +++++|+|
T Consensus 157 ~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~llPig------dGl~ia~K 218 (219)
T d2avda1 157 QLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLG------DGLTLAFK 218 (219)
T ss_dssp HHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECST------TCEEEEEE
T ss_pred HHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEEEeecC------CeeEEEEe
Confidence 569999999996652 13334566778889998776332 56999998
>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}
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class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]
Probab=90.03 E-value=0.082 Score=33.51 Aligned_cols=30 Identities=10% Similarity=0.227 Sum_probs=23.3
Q ss_pred ceeccCCcEEEEE-cCHHHHHHHHhhhccCC
Q 045201 2 DRILRPEGAVIIR-DQADVLVKVRKIVGGMR 31 (66)
Q Consensus 2 DRILRP~G~vIiR-D~~~vi~~v~~i~~~l~ 31 (66)
-|+|+|||.+.|+ |..+..+.+.+......
T Consensus 131 ~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~ 161 (204)
T d2fcaa1 131 EEVMGKGGSIHFKTDNRGLFEYSLKSFSEYG 161 (204)
T ss_dssp HHHHTTSCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred HHhCCCCcEEEEEECChHHHHHHHHHHHHCC
Confidence 4899999999886 77888887777765443
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}
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class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]
Probab=87.63 E-value=0.043 Score=34.35 Aligned_cols=15 Identities=27% Similarity=0.702 Sum_probs=13.0
Q ss_pred CceeccCCcEEEEEc
Q 045201 1 MDRILRPEGAVIIRD 15 (66)
Q Consensus 1 MDRILRP~G~vIiRD 15 (66)
|-|+|||||.++|.+
T Consensus 123 ~~r~LkPGG~l~i~~ 137 (245)
T d1nkva_ 123 LAQSLKPGGIMLIGE 137 (245)
T ss_dssp HTTSEEEEEEEEEEE
T ss_pred HHHHcCcCcEEEEEe
Confidence 358999999999976
>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}
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class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]
Probab=85.73 E-value=0.3 Score=32.37 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=35.2
Q ss_pred eeccCCcEEEEEcCHHHHHHHHhhhccCCceeEEeecCCCCcCcceEEEEEec
Q 045201 3 RILRPEGAVIIRDQADVLVKVRKIVGGMRWNTKIIDHEDGPLVTEKILFAVKR 55 (66)
Q Consensus 3 RILRP~G~vIiRD~~~vi~~v~~i~~~l~W~~~~~~~e~~~~~~e~iLi~~K~ 55 (66)
++|.|+|++++-=..+--++|++++....| ..|. .+.+++++++|+
T Consensus 224 ~~L~~~G~l~~Eig~~Q~~~v~~l~~~~g~---~kDl----~g~~R~~~~~k~ 269 (271)
T d1nv8a_ 224 RYDTSGKIVLMEIGEDQVEELKKIVSDTVF---LKDS----AGKYRFLLLNRR 269 (271)
T ss_dssp HCCCTTCEEEEECCTTCHHHHTTTSTTCEE---EECT----TSSEEEEEEECC
T ss_pred HhcCCCCEEEEEECHHHHHHHHHHHHhCCE---Eecc----CCCcEEEEEEEc
Confidence 579999999997666667888888887766 2222 247999999995
>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}
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class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.61 E-value=0.091 Score=33.66 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=22.5
Q ss_pred eeccCCcEEEEEcCHH----------------HHHHHHhhhccCCcee
Q 045201 3 RILRPEGAVIIRDQAD----------------VLVKVRKIVGGMRWNT 34 (66)
Q Consensus 3 RILRP~G~vIiRD~~~----------------vi~~v~~i~~~l~W~~ 34 (66)
|.|||||.+|+.+-.. .-+++++++..-.-++
T Consensus 186 ~~LkPGG~li~~~~~~~~~~~~~~~~~~~~~~t~e~v~~~l~~aGf~v 233 (263)
T d2g72a1 186 TLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKV 233 (263)
T ss_dssp TTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred HHcCCCCEEEEecccCCcccccCCcccccCCCCHHHHHHHHHHCCCeE
Confidence 6899999999976421 3466777776666554
>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}
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class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]
Probab=83.52 E-value=0.54 Score=29.47 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=24.1
Q ss_pred ceeccCCcEEEE-EcCHHHHHHHHhhhccCCcee
Q 045201 2 DRILRPEGAVII-RDQADVLVKVRKIVGGMRWNT 34 (66)
Q Consensus 2 DRILRP~G~vIi-RD~~~vi~~v~~i~~~l~W~~ 34 (66)
-|+|+|||.++| -|..+..+.+........+..
T Consensus 133 ~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~~ 166 (204)
T d1yzha1 133 KRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKL 166 (204)
T ss_dssp HHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEE
T ss_pred HHhCCCCcEEEEEECCccHHHHHHHHHHHCCccc
Confidence 478999999987 567777777766666656553
>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}
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class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]
Probab=82.32 E-value=0.07 Score=34.39 Aligned_cols=26 Identities=23% Similarity=0.534 Sum_probs=17.1
Q ss_pred CceeccCCcEEEEEcC-HHHHHHHHhh
Q 045201 1 MDRILRPEGAVIIRDQ-ADVLVKVRKI 26 (66)
Q Consensus 1 MDRILRP~G~vIiRD~-~~vi~~v~~i 26 (66)
|.|+|+|||.+++-.- .+.+.+++..
T Consensus 163 ~~rvLkpgG~l~~~~p~~~~l~el~~~ 189 (268)
T d1p91a_ 163 LARVVKPGGWVITATPGPRHLMELKGL 189 (268)
T ss_dssp HHHHEEEEEEEEEEEECTTTTHHHHTT
T ss_pred HHHHhCCCcEEEEEeeCCcchHHHHHH
Confidence 3589999999999652 3334444443
>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
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class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=82.00 E-value=1 Score=28.75 Aligned_cols=47 Identities=9% Similarity=0.073 Sum_probs=29.6
Q ss_pred eeccCCcEEEEEcCH--------------H----HHHHH----HhhhccCCceeEEeecCCCCcCcceEEEEEec
Q 045201 3 RILRPEGAVIIRDQA--------------D----VLVKV----RKIVGGMRWNTKIIDHEDGPLVTEKILFAVKR 55 (66)
Q Consensus 3 RILRP~G~vIiRD~~--------------~----vi~~v----~~i~~~l~W~~~~~~~e~~~~~~e~iLi~~K~ 55 (66)
+.|||||.+|+-|-. . +.+.+ +.+...=+|++.+.... +++++|+|-
T Consensus 158 ~ll~~gGiii~DNvl~~G~v~~~~~~~~~~~~~~~~~~i~~~n~~i~~d~r~~~~llPig------DGl~i~~K~ 226 (227)
T d1susa1 158 DLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVG------DGITICRRI 226 (227)
T ss_dssp HHBCTTCCEEEETTTGGGGGGCCTTCCCCHHHHHHHHHHHHHHHHHHHCTTBCCEEECST------TCEEEECBC
T ss_pred hhcCCCcEEEEccCCCCCcccCCcccchHHHHHHHHHHHHHHHHHHhcCCCEEEEEeecC------CeeEEEEEC
Confidence 479999999997652 1 11122 33444557887776443 459999883
>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}
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class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]
Probab=81.43 E-value=0.57 Score=30.42 Aligned_cols=38 Identities=21% Similarity=0.263 Sum_probs=24.5
Q ss_pred eeccCCcEEEEEcC-HHHHHHHHhhhccCCceeEEeecC
Q 045201 3 RILRPEGAVIIRDQ-ADVLVKVRKIVGGMRWNTKIIDHE 40 (66)
Q Consensus 3 RILRP~G~vIiRD~-~~vi~~v~~i~~~l~W~~~~~~~e 40 (66)
|.|+|||.+|+-+- .+-.+.+.+.+....|...-...+
T Consensus 206 ~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~~~~~ 244 (254)
T d2nxca1 206 EALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAE 244 (254)
T ss_dssp HHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEE
T ss_pred HhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEEEEEE
Confidence 78999999997531 122356667777777875433333
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}
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class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]
Probab=81.36 E-value=0.13 Score=31.09 Aligned_cols=14 Identities=29% Similarity=0.638 Sum_probs=12.1
Q ss_pred ceeccCCcEEEEEc
Q 045201 2 DRILRPEGAVIIRD 15 (66)
Q Consensus 2 DRILRP~G~vIiRD 15 (66)
-|+|+|||+++|-|
T Consensus 105 ~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 105 YRVLKKGGQLLLVD 118 (231)
T ss_dssp HHHEEEEEEEEEEE
T ss_pred HHhcCCCcEEEEEe
Confidence 37899999999975
>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
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class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Thyroid receptor interacting protein 6, TRIP6
species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.31 E-value=0.27 Score=24.34 Aligned_cols=12 Identities=50% Similarity=0.800 Sum_probs=10.0
Q ss_pred CceeccCCcEEE
Q 045201 1 MDRILRPEGAVI 12 (66)
Q Consensus 1 MDRILRP~G~vI 12 (66)
||||||--|..+
T Consensus 19 ~driLrA~Gk~y 30 (35)
T d2dloa1 19 LDRILRAMGKAY 30 (35)
T ss_dssp CSCCEEETTEEE
T ss_pred HHHHHHHhCCCC
Confidence 799999988754