Citrus Sinensis ID: 045236
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 604 | 2.2.26 [Sep-21-2011] | |||||||
| O65351 | 757 | Subtilisin-like protease | no | no | 0.956 | 0.763 | 0.561 | 0.0 | |
| O64495 | 775 | Subtilisin-like protease | no | no | 0.963 | 0.750 | 0.477 | 1e-142 | |
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.905 | 0.748 | 0.405 | 1e-104 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.910 | 0.734 | 0.392 | 3e-96 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.597 | 0.447 | 0.307 | 3e-27 | |
| P15926 | 1167 | C5a peptidase OS=Streptoc | yes | no | 0.599 | 0.310 | 0.266 | 1e-12 | |
| Q5X9R0 | 1184 | C5a peptidase OS=Streptoc | N/A | no | 0.599 | 0.305 | 0.266 | 1e-12 | |
| Q8NZ80 | 1150 | C5a peptidase OS=Streptoc | N/A | no | 0.599 | 0.314 | 0.266 | 1e-12 | |
| P58099 | 1181 | C5a peptidase OS=Streptoc | N/A | no | 0.596 | 0.304 | 0.269 | 3e-12 | |
| P0DD35 | 1169 | C5a peptidase OS=Streptoc | yes | no | 0.599 | 0.309 | 0.264 | 3e-11 |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 636 bits (1640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/602 (56%), Positives = 425/602 (70%), Gaps = 24/602 (3%)
Query: 4 DFPASACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNA 63
+F AS CN+K+IGAR F RGYES M PIDE++ES+SPRD +GHGTHT+STAAGS+V A
Sbjct: 170 NFTASLCNRKLIGARFFARGYESTMG-PIDESKESRSPRDDDGHGTHTSSTAAGSVVEGA 228
Query: 64 SLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGASGYA 123
SL YA G ARGMA +AR+AVYK+CW GCF SDILAA+D+AIAD V+V+S+S+G G
Sbjct: 229 SLLGYASGTARGMAPRARVAVYKVCWLGGCFSSDILAAIDKAIADNVNVLSMSLG--GGM 286
Query: 124 PQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPADAI 183
Y +D +AIG+F A + G++VSCSAGN+GP + +N+APWI TVGA T+DR+FPA AI
Sbjct: 287 SDYYRDGVAIGAFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAI 346
Query: 184 LGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGD----RFCYMGRLEPSKVQGKIVVCDRG 239
LG+G+ F GVSL+ GE+LPD L +Y G+ + C G L P KV+GKIV+CDRG
Sbjct: 347 LGNGKNFTGVSLFKGEALPDKLLPFIYAGNASNATNGNLCMTGTLIPEKVKGKIVMCDRG 406
Query: 240 GNARVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQY 299
NARV+KG VK AGG+GMILANT +GEEL+AD+HL+PAT VG AGD IR Y+
Sbjct: 407 INARVQKGDVVKAAGGVGMILANTAANGEELVADAHLLPATTVGEKAGDIIRHYVTTDPN 466
Query: 300 PTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTD 359
PTA+I GTV+ P +P VAAFSSRGPNS+T ILKPD+IAPGVNILAAWTG+ GPT
Sbjct: 467 PTASISILGTVVGVKP-SPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTG 525
Query: 360 LEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENI 419
L D RRV+FNIISGTSMSCPHVSGLAALL+ +P+WSPAAI+SALMTTAY G+ +
Sbjct: 526 LASDSRRVEFNIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPL 585
Query: 420 KDLASGEESTPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDVKRISVFVREPV 479
D+A+G+ STPF HGAGHV P A NPGL+YD+ +Y+ FLC++ Y +I R
Sbjct: 586 LDIATGKPSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSRRNY 645
Query: 480 SSDICTRALATPGNLNYPSFSVVFNSNNDVV---KYKRVVKNVGSSVDAVYEVKVNAPPN 536
+ D + +LNYPSF+V N D V KY R V +VG + Y VKV +
Sbjct: 646 TCDPSKS--YSVADLNYPSFAV----NVDGVGAYKYTRTVTSVGGA--GTYSVKVTSETT 697
Query: 537 -VAVNVWPSKLAFSAEKKALAYEITFSSVGLDGLGVSPQQS-GSIEWSDGVHLVRSPIAV 594
V ++V P+ L F + +Y +TF+ +D S S GSIEWSDG H+V SP+A+
Sbjct: 698 GVKISVEPAVLNFKEANEKKSYTVTFT---VDSSKPSGSNSFGSIEWSDGKHVVGSPVAI 754
Query: 595 RW 596
W
Sbjct: 755 SW 756
|
Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 504 bits (1298), Expect = e-142, Method: Compositional matrix adjust.
Identities = 289/605 (47%), Positives = 383/605 (63%), Gaps = 23/605 (3%)
Query: 3 KDFPASACNKKIIGARAFYRGYE---SYMERPIDETEESKSPRDTEGHGTHTASTAAGSL 59
+ F +S+CN+K+IGAR F RG+ S E P + E S RD+ GHGTHTAST GS
Sbjct: 176 ESFSSSSCNRKLIGARFFIRGHRVANSPEESP-NMPREYISARDSTGHGTHTASTVGGSS 234
Query: 60 VSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGA 119
VS A++ G ARGMA A IAVYK+CW GC+ SDILAA+D AI D VDV+SLS+G
Sbjct: 235 VSMANVLGNGAGVARGMAPGAHIAVYKVCWFNGCYSSDILAAIDVAIQDKVDVLSLSLG- 293
Query: 120 SGY-APQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREF 178
G+ P YD D+IAIG+F A + G+ V C+AGN+GP + N APW+ T+GA T+DR F
Sbjct: 294 -GFPIPLYD-DTIAIGTFRAMERGISVICAAGNNGPIESSVANTAPWVSTIGAGTLDRRF 351
Query: 179 PADAILGDGRIFGGVSLYAGESLP----DFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIV 234
PA L +G++ G SLY G+ + + ++ V GGD G FC G L +++GK+V
Sbjct: 352 PAVVRLANGKLLYGESLYPGKGIKNAGREVEVIYVTGGDKGSEFCLRGSLPREEIRGKMV 411
Query: 235 VCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYI 294
+CDRG N R EKG AVK AGG+ MILANT+ + EE D HL+PAT++G ++ Y+
Sbjct: 412 ICDRGVNGRSEKGEAVKEAGGVAMILANTEINQEEDSIDVHLLPATLIGYTESVLLKAYV 471
Query: 295 KLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGS 354
+ P A I+F GTVI S AP+VA FS+RGP+ ILKPD+IAPGVNI+AAW +
Sbjct: 472 NATVKPKARIIFGGTVIGRSR-APEVAQFSARGPSLANPSILKPDMIAPGVNIIAAWPQN 530
Query: 355 TGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDN 414
GPT L D RRV+F ++SGTSMSCPHVSG+ AL+R AYP+WSPAAIKSALMTTA D
Sbjct: 531 LGPTGLPYDSRRVNFTVMSGTSMSCPHVSGITALIRSAYPNWSPAAIKSALMTTADLYDR 590
Query: 415 SGENIKDLASGEESTPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDVKRISVF 474
G+ IKD + + F GAGHV+P +A+NPGLVY+I +Y+ +LC++G+ I
Sbjct: 591 QGKAIKD--GNKPAGVFAIGAGHVNPQKAINPGLVYNIQPVDYITYLCTLGFTRSDILAI 648
Query: 475 VREPVSSDICTRALATPG-NLNYPSFSVVFNSNNDVVKYKRVVKNVGSSVDAVYEVKVNA 533
+ VS + R PG +LNYPS +V+F R V NVGS +++Y V V A
Sbjct: 649 THKNVSCNGILR--KNPGFSLNYPSIAVIFKRGKTTEMITRRVTNVGSP-NSIYSVNVKA 705
Query: 534 PPNVAVNVWPSKLAFSAEKKALAYEITFSSVGLD-GLGVSPQQSGSIEWSDGVHL---VR 589
P + V V P +L F + L+Y + F + G V+ G + W + +L VR
Sbjct: 706 PEGIKVIVNPKRLVFKHVDQTLSYRVWFVLKKKNRGGKVASFAQGQLTWVNSHNLMQRVR 765
Query: 590 SPIAV 594
SPI+V
Sbjct: 766 SPISV 770
|
Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function description |
|---|
Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust.
Identities = 246/607 (40%), Positives = 342/607 (56%), Gaps = 60/607 (9%)
Query: 1 TSKDFPASACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLV 60
TS +F CN+KIIGAR+++ G RPI + PRDT GHGTHTASTAAG LV
Sbjct: 168 TSNNF---RCNRKIIGARSYHIG------RPISP-GDVNGPRDTNGHGTHTASTAAGGLV 217
Query: 61 SNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGAS 120
S A+L+ G ARG ARIA YK+CW+ GC D+DILAA D AIADGVD+ISLSVG +
Sbjct: 218 SQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGA 277
Query: 121 GYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPA 180
Y D+IAIGSF A + G++ S SAGN GP FT +++PW+L+V AST+DR+F
Sbjct: 278 N-PRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVT 336
Query: 181 DAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGD--------RFCYMGRLEPSKVQGK 232
+G+G+ F GVS+ + + LV G D + RFC + P+ ++GK
Sbjct: 337 QVQIGNGQSFQGVSI---NTFDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGK 393
Query: 233 IVVCDRG-GNARVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIR 291
IVVC+ G K L G G+++ S ADS+ +P++++
Sbjct: 394 IVVCEASFGPHEFFK----SLDGAAGVLMT----SNTRDYADSYPLPSSVLDPNDLLATL 445
Query: 292 EYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAW 351
YI + P ATI T+++ S AP V +FSSRGPN T +++KPD+ PGV ILAAW
Sbjct: 446 RYIYSIRSPGATIFKSTTILNAS--APVVVSFSSRGPNRATKDVIKPDISGPGVEILAAW 503
Query: 352 TGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYN 411
+ R FNIISGTSMSCPH++G+A ++ P WSPAAIKSALMTTA
Sbjct: 504 PSVAPVGGIR---RNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASP 560
Query: 412 LDNSGENIKDLASGEESTPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDVKRI 471
++ A F +G+GHV+P +A+ PGLVYD + S+YV FLC GY+ + +
Sbjct: 561 MN---------ARFNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAV 611
Query: 472 SVFVREPVSSDICTRALATPG---NLNYPSFSVVFNSNNDVVKY-KRVVKNVGSSVDAVY 527
++ D G +LNYPSF + + + +Y R + +V + Y
Sbjct: 612 -----RRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQA-STY 665
Query: 528 EVKVNAPPNVAVNVWPSKLAFSAEKKALAYEITFSSVGLDGLGVSPQQSGSIEWSDGVHL 587
++AP + ++V P+ L+F+ ++ +T + G V S S+ WSDGVH
Sbjct: 666 RAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRG-SIKGFVV----SASLVWSDGVHY 720
Query: 588 VRSPIAV 594
VRSPI +
Sbjct: 721 VRSPITI 727
|
Cucumis melo (taxid: 3656) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 353 bits (905), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 240/611 (39%), Positives = 341/611 (55%), Gaps = 61/611 (9%)
Query: 3 KDFPASACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSN 62
K+F + CN KIIGA+ F E +SP D +GHGTHT+ST AG LV+N
Sbjct: 175 KNF--TGCNNKIIGAKYFKHDGNV-------PAGEVRSPIDIDGHGTHTSSTVAGVLVAN 225
Query: 63 ASLFDYARGEARGMAVKARIAVYKICWS-PGCFDSDILAAMDQAIADGVDVISLSVGASG 121
ASL+ A G ARG AR+A+YK+CW+ GC D DILA + AI DGV++IS+S+G
Sbjct: 226 ASLYGIANGTARGAVPSARLAMYKVCWARSGCADMDILAGFEAAIHDGVEIISISIGGP- 284
Query: 122 YAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPAD 181
Y DSI++GSF A + G++ SAGN GP T TN PWILTV AS IDR F +
Sbjct: 285 -IADYSSDSISVGSFHAMRKGILTVASAGNDGPSSGTVTNHEPWILTVAASGIDRTFKSK 343
Query: 182 AILGDGRIFGG--VSLYA--GESLPDFKLHLVYGGDCGD--------RFCYMGRLEPSKV 229
LG+G+ F G +S+++ +S P LV G D R+C+ L+ KV
Sbjct: 344 IDLGNGKSFSGMGISMFSPKAKSYP-----LVSGVDAAKNTDDKYLARYCFSDSLDRKKV 398
Query: 230 QGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDK 289
+GK++VC GG VE + +K GG G I+ +D+ + A + PAT V + GD
Sbjct: 399 KGKVMVCRMGGGG-VE--STIKSYGGAGAIIV-SDQYLDN--AQIFMAPATSVNSSVGDI 452
Query: 290 IREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILA 349
I YI ++ +A I V + PAP VA+FSSRGPN + +LKPD+ APG++ILA
Sbjct: 453 IYRYINSTRSASAVIQKTRQV---TIPAPFVASFSSRGPNPGSIRLLKPDIAAPGIDILA 509
Query: 350 AWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTA 409
A+T T L+ D + F I+SGTSM+CPHV+G+AA ++ +PDW+PAAIKSA++T+A
Sbjct: 510 AFTLKRSLTGLDGDTQFSKFTILSGTSMACPHVAGVAAYVKSFHPDWTPAAIKSAIITSA 569
Query: 410 YNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDVK 469
+ + F +G G ++P RA +PGLVYD+D YV FLC GY+
Sbjct: 570 KPISR---------RVNKDAEFAYGGGQINPRRAASPGLVYDMDDISYVQFLCGEGYNAT 620
Query: 470 RISVFVREPVSSDICTRALATPGN--LNYPSFSVVFNS--NNDVVKYKRVVKNVGSSVDA 525
++ V S C+ + G+ LNYP+ + S + + ++R V NVG +
Sbjct: 621 TLAPLV--GTRSVSCSSIVPGLGHDSLNYPTIQLTLRSAKTSTLAVFRRRVTNVGPP-SS 677
Query: 526 VYEVKVNAPPNVAVNVWPSKLAFSAEKKALAYEITFSSVGLDGLGVSPQQ--SGSIEWSD 583
VY V AP V + V P L+FS + ++++ + + +P + SG + W
Sbjct: 678 VYTATVRAPKGVEITVEPQSLSFSKASQKRSFKVVVKAKQM-----TPGKIVSGLLVWKS 732
Query: 584 GVHLVRSPIAV 594
H VRSPI +
Sbjct: 733 PRHSVRSPIVI 743
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 125/407 (30%), Positives = 200/407 (49%), Gaps = 46/407 (11%)
Query: 21 YRGYESYMERPIDETEE-SKSPR-DTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAV 78
Y+GY+ +++ D E + PR + HGTH A T A A G +G+A
Sbjct: 206 YKGYD-FVDNDYDPKETPTGDPRGEATDHGTHVAGTVA------------ANGTIKGVAP 252
Query: 79 KARIAVYKICWSPGCFDSD-ILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFG 137
A + Y++ G ++ ++A +++A+ DG DV++LS+G S P + + +
Sbjct: 253 DATLLAYRVLGPGGSGTTENVIAGVERAVQDGADVMNLSLGNSLNNPDW---ATSTALDW 309
Query: 138 AAQHGVVVSCSAGNSGPGPFT--ATNIAPWILTVGASTID-REFPAD-AILGDGRIFGGV 193
A GVV S GNSGP +T + + ++VGA+ + E+ ++ G
Sbjct: 310 AMSEGVVAVTSNGNSGPNGWTVGSPGTSREAISVGATQLPLNEYAVTFGSYSSAKVMGYN 369
Query: 194 SLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLA 253
++L + ++ LV G G+ + G+ + GK+ V RG A V+K K A
Sbjct: 370 KEDDVKALNNKEVELVEAG-IGEAKDFEGK----DLTGKVAVVKRGSIAFVDKADNAKKA 424
Query: 254 GGLGMILANTDESGE-ELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVIS 312
G +GM++ N + SGE E +P + G+K+ +K + T F+ TV
Sbjct: 425 GAIGMVVYN-NLSGEIEANVPGMSVPTIKLSLEDGEKLVSALKAGETKT---TFKLTV-- 478
Query: 313 PSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRR-VDFNI 371
+VA FSSRGP + ++KPD+ APGVNI+ ST PT DP +
Sbjct: 479 SKALGEQVADFSSRGP-VMDTWMIKPDISAPGVNIV-----STIPTH---DPDHPYGYGS 529
Query: 372 ISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNL-DNSGE 417
GTSM+ PH++G A++++A P WS IK+A+M TA L D+ GE
Sbjct: 530 KQGTSMASPHIAGAVAVIKQAKPKWSVEQIKAAIMNTAVTLKDSDGE 576
|
Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P15926|C5AP_STRPY C5a peptidase OS=Streptococcus pyogenes GN=scpA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 120/450 (26%), Positives = 185/450 (41%), Gaps = 88/450 (19%)
Query: 33 DETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG 92
D +++ K+ D E HGTH +G L NA G +A++ + ++ G
Sbjct: 180 DYSKDGKTAVDQE-HGTH----VSGILSGNAPSETKEPYRLEGAMPEAQLLLMRVEIVNG 234
Query: 93 CFD--SDILAAMDQAIADGVDVISLSVG--ASGYAPQYDQDSIAIGSFGAAQHGVVVSCS 148
D + A+ A+ G VI++S G A YA D+ A A GV + S
Sbjct: 235 LADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDY--AKSKGVSIVTS 292
Query: 149 AGNSGPGPFTATNIAPWILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLH- 207
AGN F P + AD+ L V+ Y+ PD +L
Sbjct: 293 AGNDSS--FGGKTRLPLADHPDYGVVGTPAAADSTLT-------VASYS----PDKQLTE 339
Query: 208 --LVYGGDCGDR---FCYMGRLEPSK------------------VQGKIVVCDRGGNARV 244
+V D D+ R EP+K V+GKI + +RG
Sbjct: 340 TAMVKTDDQQDKEMPVLSTNRFEPNKAYDYAYANRGMKEDDFKDVKGKIALIERGDIDFK 399
Query: 245 EKGAAVKLAGGLGMILANTDESGEEL-IADSHLIPATMVGAIAGDKIREYIKLSQYPTAT 303
+K A K AG +G+++ + + G + + + +PA + G + L P T
Sbjct: 400 DKVANAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDG------LLLKDNPQKT 453
Query: 304 IVFRGT-VISPSPPAPKVAAFSSRGPNSLTAE-ILKPDVIAPGVNILAAWTGSTGPTDLE 361
I F T + P+ K++ FSS G LTA+ +KPD+ APG +IL++ +
Sbjct: 454 ITFNATPKVLPTASGTKLSRFSSWG---LTADGNIKPDIAAPGQDILSSVANNK------ 504
Query: 362 IDPRRVDFNIISGTSMSCPHVSGLAALLRK----AYPDWSPAA----IKSALMTTAYNLD 413
+ +SGTSMS P V+G+ LL+K YPD +P+ K LM++A L
Sbjct: 505 -------YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALY 557
Query: 414 NSGENIKDLASGEESTPFIHGAGHVDPNRA 443
+ E +P GAG VD +A
Sbjct: 558 DEDEKAY-------FSPRQQGAGAVDAKKA 580
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes (taxid: 1314) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|Q5X9R0|C5AP_STRP6 C5a peptidase OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 120/450 (26%), Positives = 185/450 (41%), Gaps = 88/450 (19%)
Query: 33 DETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG 92
D +++ K+ D E HGTH +G L NA G +A++ + ++ G
Sbjct: 180 DYSKDGKTAVDQE-HGTH----VSGILSGNAPSETKEPYRLEGAMPEAQLLLMRVEIVNG 234
Query: 93 CFD--SDILAAMDQAIADGVDVISLSVG--ASGYAPQYDQDSIAIGSFGAAQHGVVVSCS 148
D + A+ A+ G VI++S G A YA D+ A A GV + S
Sbjct: 235 LADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDY--AKSKGVSIVTS 292
Query: 149 AGNSGPGPFTATNIAPWILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLH- 207
AGN F P + AD+ L V+ Y+ PD +L
Sbjct: 293 AGNDSS--FGGKTRLPLADHPDYGVVGTPAAADSTLT-------VASYS----PDKQLTE 339
Query: 208 --LVYGGDCGDR---FCYMGRLEPSK------------------VQGKIVVCDRGGNARV 244
V D D+ R EP+K V+GKI + +RG
Sbjct: 340 TATVKTADQQDKEMPVLSTNRFEPNKAYDYAYANRGMKEDDFKDVKGKIALIERGDIDFK 399
Query: 245 EKGAAVKLAGGLGMILANTDESGEEL-IADSHLIPATMVGAIAGDKIREYIKLSQYPTAT 303
+K A K AG +G+++ + + G + + + +PA + G + L + P T
Sbjct: 400 DKIANAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDG------LLLKENPQKT 453
Query: 304 IVFRGT-VISPSPPAPKVAAFSSRGPNSLTAE-ILKPDVIAPGVNILAAWTGSTGPTDLE 361
I F T + P+ K++ FSS G LTA+ +KPD+ APG +IL++ +
Sbjct: 454 ITFNATPKVLPTASGTKLSRFSSWG---LTADGNIKPDIAAPGQDILSSVANNK------ 504
Query: 362 IDPRRVDFNIISGTSMSCPHVSGLAALLRK----AYPDWSPAA----IKSALMTTAYNLD 413
+ +SGTSMS P V+G+ LL+K YPD +P+ K LM++A L
Sbjct: 505 -------YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALY 557
Query: 414 NSGENIKDLASGEESTPFIHGAGHVDPNRA 443
+ E +P GAG VD +A
Sbjct: 558 DEDEKAY-------FSPRQQGAGAVDAKKA 580
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M6 (taxid: 301450) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|Q8NZ80|C5AP_STRP8 C5a peptidase OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 120/450 (26%), Positives = 185/450 (41%), Gaps = 88/450 (19%)
Query: 33 DETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG 92
D +++ K+ D E HGTH +G L NA G +A++ + ++ G
Sbjct: 180 DYSKDGKTAVDQE-HGTH----VSGILSGNAPSETKEPYRLEGAMPEAQLLLMRVEIVNG 234
Query: 93 CFD--SDILAAMDQAIADGVDVISLSVG--ASGYAPQYDQDSIAIGSFGAAQHGVVVSCS 148
D + A+ A+ G VI++S G A YA D+ A A GV + S
Sbjct: 235 LADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDY--AKSKGVSIVTS 292
Query: 149 AGNSGPGPFTATNIAPWILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLH- 207
AGN F P + AD+ L V+ Y+ PD +L
Sbjct: 293 AGNDSS--FGGKTRLPLADHPDYGVVGTPAAADSTLT-------VASYS----PDKQLTE 339
Query: 208 --LVYGGDCGDR---FCYMGRLEPSK------------------VQGKIVVCDRGGNARV 244
V D D+ R EP+K V+GKI + +RG
Sbjct: 340 TATVKTADQQDKEMPVLSTNRFEPNKAYDYAYANRGMKEDDFKDVKGKIALIERGDIDFK 399
Query: 245 EKGAAVKLAGGLGMILANTDESGEEL-IADSHLIPATMVGAIAGDKIREYIKLSQYPTAT 303
+K A K AG +G+++ + + G + + + +PA + G + L + P T
Sbjct: 400 DKIANAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDG------LLLKENPQKT 453
Query: 304 IVFRGT-VISPSPPAPKVAAFSSRGPNSLTAE-ILKPDVIAPGVNILAAWTGSTGPTDLE 361
I F T + P+ K++ FSS G LTA+ +KPD+ APG +IL++ +
Sbjct: 454 ITFNATPKVLPTASGTKLSRFSSWG---LTADGNIKPDIAAPGQDILSSVANNK------ 504
Query: 362 IDPRRVDFNIISGTSMSCPHVSGLAALLRK----AYPDWSPAA----IKSALMTTAYNLD 413
+ +SGTSMS P V+G+ LL+K YPD +P+ K LM++A L
Sbjct: 505 -------YAKLSGTSMSAPLVAGIMGLLQKQYEIQYPDMTPSERLDLAKKVLMSSATALY 557
Query: 414 NSGENIKDLASGEESTPFIHGAGHVDPNRA 443
+ E +P GAG VD +A
Sbjct: 558 DEDEKAY-------FSPRQQGAGAVDAKKA 580
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M18 (taxid: 301451) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P58099|C5AP_STRP1 C5a peptidase OS=Streptococcus pyogenes serotype M1 GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 122/452 (26%), Positives = 186/452 (41%), Gaps = 92/452 (20%)
Query: 33 DETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG 92
D +++ K+ D E HGTH +G L NA G +A++ + ++ G
Sbjct: 180 DYSKDGKTAVDQE-HGTH----VSGILSGNAPSETKEPYRLEGAMPEAQLLLMRVEIVNG 234
Query: 93 CFDSDILAAMDQAIADGVD----VISLSVG--ASGYAPQYDQDSIAIGSFGAAQHGVVVS 146
+D QAI D V+ VI++S G A YA D+ A A GV +
Sbjct: 235 L--ADYARNYAQAIIDAVNLGAKVINMSFGNAALAYANLPDETKKAFDY--AKSKGVSIV 290
Query: 147 CSAGNSGPGPFTATNIAPWILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKL 206
SAGN F P + AD+ L V+ Y+ PD +L
Sbjct: 291 TSAGNDSS--FGGKTRLPLADHPDYGVVGTPAAADSTLT-------VASYS----PDKQL 337
Query: 207 H---LVYGGDCGDR---FCYMGRLEPSK------------------VQGKIVVCDRGGNA 242
V D D+ R EP+K V+GKI + +RG
Sbjct: 338 TETATVKTADQQDKEMPVLSTNRFEPNKAYDYAYANRGMKEDDFKDVKGKIALIERGDID 397
Query: 243 RVEKGAAVKLAGGLGMILANTDESGEEL-IADSHLIPATMVGAIAGDKIREYIKLSQYPT 301
+K A K AG +G+++ + + G + + + +PA + G + L + P
Sbjct: 398 FKDKIANAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDG------LLLKENPQ 451
Query: 302 ATIVFRGT-VISPSPPAPKVAAFSSRGPNSLTAE-ILKPDVIAPGVNILAAWTGSTGPTD 359
TI F T + P+ K++ FSS G LTA+ +KPD+ APG +IL++ +
Sbjct: 452 KTITFNATPKVLPTASGTKLSRFSSWG---LTADGNIKPDIAAPGQDILSSVANNK---- 504
Query: 360 LEIDPRRVDFNIISGTSMSCPHVSGLAALLRK----AYPDWSPAA----IKSALMTTAYN 411
+ +SGTSMS P V+G+ LL+K YPD +P+ K LM++A
Sbjct: 505 ---------YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATA 555
Query: 412 LDNSGENIKDLASGEESTPFIHGAGHVDPNRA 443
L + E +P GAG VD +A
Sbjct: 556 LYDEDEKAY-------FSPRQQGAGAVDAKKA 580
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M1 (taxid: 301447) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P0DD35|C5AP_STRPQ C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 119/450 (26%), Positives = 183/450 (40%), Gaps = 88/450 (19%)
Query: 33 DETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG 92
D +++ K+ D E HGTH +G L NA G +A++ + ++ G
Sbjct: 182 DYSKDGKTAVDQE-HGTH----VSGILSGNAPSETKEPYRLEGAMPEAQLLLMRVEIVNG 236
Query: 93 CFD--SDILAAMDQAIADGVDVISLSVG--ASGYAPQYDQDSIAIGSFGAAQHGVVVSCS 148
D + A+ A+ G VI++S G A YA D+ A A GV + S
Sbjct: 237 LADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDY--AKSKGVSIVTS 294
Query: 149 AGNSGPGPFTATNIAPWILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLH- 207
AGN F P + AD+ L V+ Y+ PD +L
Sbjct: 295 AGNDSS--FGGKTRLPLADHPDYGVVGTPAAADSTLT-------VASYS----PDKQLTE 341
Query: 208 --LVYGGDCGDR---FCYMGRLEPSK------------------VQGKIVVCDRGGNARV 244
V D D+ R EP+K V+GKI + +RG
Sbjct: 342 TATVKTADQQDKEMPVLSTNRFEPNKAYDYAYANRGTKEDDFKDVKGKIALIERGDIDFK 401
Query: 245 EKGAAVKLAGGLGMILANTDESGEEL-IADSHLIPATMVGAIAGDKIREYIKLSQYPTAT 303
+K A K AG +G+++ + + G + + + +PA + G + L T
Sbjct: 402 DKIANAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDG------LLLKDNSKKT 455
Query: 304 IVFRGT-VISPSPPAPKVAAFSSRGPNSLTAE-ILKPDVIAPGVNILAAWTGSTGPTDLE 361
I F T + P+ K++ FSS G LTA+ +KPD+ APG +IL++ +
Sbjct: 456 ITFNATPKVLPTASGTKLSRFSSWG---LTADGNIKPDIAAPGQDILSSVANNK------ 506
Query: 362 IDPRRVDFNIISGTSMSCPHVSGLAALLRK----AYPDWSPAA----IKSALMTTAYNLD 413
+ +SGTSMS P V+G+ LL+K YPD +P+ K LM++A L
Sbjct: 507 -------YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALY 559
Query: 414 NSGENIKDLASGEESTPFIHGAGHVDPNRA 443
+ E +P GAG VD +A
Sbjct: 560 DEDEKAY-------FSPRQQGAGAVDAKKA 582
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M3 (strain SSI-1) (taxid: 193567) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 604 | ||||||
| 357514069 | 785 | Cucumisin-like serine protease subtilisi | 0.983 | 0.756 | 0.751 | 0.0 | |
| 356558946 | 773 | PREDICTED: subtilisin-like protease-like | 0.975 | 0.761 | 0.762 | 0.0 | |
| 225442092 | 771 | PREDICTED: subtilisin-like protease isof | 0.993 | 0.778 | 0.742 | 0.0 | |
| 356519802 | 775 | PREDICTED: subtilisin-like protease-like | 0.980 | 0.763 | 0.761 | 0.0 | |
| 320117871 | 810 | subtilisin-like protease 2 [Phaseolus vu | 0.986 | 0.735 | 0.749 | 0.0 | |
| 147791956 | 579 | hypothetical protein VITISV_014207 [Viti | 0.948 | 0.989 | 0.739 | 0.0 | |
| 22331076 | 777 | Subtilase family protein [Arabidopsis th | 0.995 | 0.773 | 0.733 | 0.0 | |
| 297834254 | 777 | subtilase family protein [Arabidopsis ly | 0.995 | 0.773 | 0.732 | 0.0 | |
| 110740849 | 777 | putative subtilisin-like serine proteina | 0.995 | 0.773 | 0.733 | 0.0 | |
| 222424791 | 601 | AT3G14067 [Arabidopsis thaliana] | 0.988 | 0.993 | 0.732 | 0.0 |
| >gi|357514069|ref|XP_003627323.1| Cucumisin-like serine protease subtilisin-like protease [Medicago truncatula] gi|355521345|gb|AET01799.1| Cucumisin-like serine protease subtilisin-like protease [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 941 bits (2433), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/604 (75%), Positives = 521/604 (86%), Gaps = 10/604 (1%)
Query: 2 SKDFPASACNK--KIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSL 59
SKDFP+S+CN KIIGA+AFY+GYE+Y++RPIDET ESKSPRDTEGHGTHTASTAAGS+
Sbjct: 180 SKDFPSSSCNSNSKIIGAKAFYKGYEAYLQRPIDETVESKSPRDTEGHGTHTASTAAGSV 239
Query: 60 VSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGA 119
V NASLF +ARGEA+GMA KARIA YKICW GCFDSDILAAMD+A+ADGV VISLSVG+
Sbjct: 240 VGNASLFGFARGEAKGMATKARIAAYKICWKLGCFDSDILAAMDEAVADGVHVISLSVGS 299
Query: 120 SGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFP 179
+GYAP Y +DSIAIG+FGAAQHGVVVSCSAGNSGPGP+T+ NIAPWILTVGASTIDREFP
Sbjct: 300 NGYAPHYYRDSIAIGAFGAAQHGVVVSCSAGNSGPGPYTSVNIAPWILTVGASTIDREFP 359
Query: 180 ADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRG 239
AD +LGDGR+FGGVSLY G+SLPD KL L+YG DCG R+CY+G L+ SKVQGKIVVCDRG
Sbjct: 360 ADVVLGDGRVFGGVSLYYGDSLPDNKLPLIYGADCGSRYCYLGSLDSSKVQGKIVVCDRG 419
Query: 240 GNARVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQY 299
GNARVEKG+AVK AGGLGMI+ANT+E+GEEL+AD+HL+ ATMVG A +KIREYIK S+
Sbjct: 420 GNARVEKGSAVKKAGGLGMIMANTEENGEELLADAHLVAATMVGENAAEKIREYIKSSEN 479
Query: 300 PTATIVFRGTVI--SPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGP 357
PTATI F+GTVI SP AP+VA+FSSRGPN TAEILKPDVIAPGVNILA WTG GP
Sbjct: 480 PTATIKFKGTVIGGEGSPSAPQVASFSSRGPNYRTAEILKPDVIAPGVNILAGWTGKVGP 539
Query: 358 TDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGE 417
TDLEIDPRRV+FNIISGTSMSCPHVSG+AALLRKAYP+WSPAAIKSALMTTAYN+DNSG
Sbjct: 540 TDLEIDPRRVEFNIISGTSMSCPHVSGIAALLRKAYPEWSPAAIKSALMTTAYNVDNSGG 599
Query: 418 NIKDLASGEESTPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDVKRISVFVRE 477
IKDL +G+ES PF+HGAGHVDPN+ALNPGLVYD+++++Y+AFLCSIGYD K I +F RE
Sbjct: 600 KIKDLGTGKESNPFVHGAGHVDPNKALNPGLVYDLNINDYLAFLCSIGYDAKEIQIFTRE 659
Query: 478 PVSSDIC--TRALATPGNLNYPSFSVVFNSNNDVVKYKRVVKNVGSSVDAVYEVKVNAPP 535
P S ++C R +PG+LNYPSFSVVF +NN +VKYKRV+ NVG SVDAVY VKVNAP
Sbjct: 660 PTSYNVCENERKFTSPGDLNYPSFSVVFGANNGLVKYKRVLTNVGDSVDAVYTVKVNAPF 719
Query: 536 NVAVNVWPSKLAFSAEKKALAYEITFSSVGLDGLGVSPQQSGSIEWSDGVHLVRSPIAVR 595
V V+V PSKL FS+E K A+E+TF+ +G G Q GS+EWSDG H+VRSPIA R
Sbjct: 720 GVDVSVSPSKLVFSSENKTQAFEVTFTRIGYGG----SQSFGSLEWSDGSHIVRSPIAAR 775
Query: 596 WIQG 599
W G
Sbjct: 776 WSNG 779
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356558946|ref|XP_003547763.1| PREDICTED: subtilisin-like protease-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 930 bits (2404), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/599 (76%), Positives = 514/599 (85%), Gaps = 10/599 (1%)
Query: 2 SKDFPASACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVS 61
S DFP+S CN KIIGA+AFY+GYESY+ERPIDE++ESKSPRDTEGHGTHTASTAAG++VS
Sbjct: 169 SPDFPSSLCNNKIIGAKAFYKGYESYLERPIDESQESKSPRDTEGHGTHTASTAAGAVVS 228
Query: 62 NASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGASG 121
NASLF YARGEARGMA KARIA YKICW GCFDSDILAAMD+A++DGV VISLSVG+SG
Sbjct: 229 NASLFHYARGEARGMATKARIAAYKICWKLGCFDSDILAAMDEAVSDGVHVISLSVGSSG 288
Query: 122 YAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPAD 181
YAPQY +DSIA+G+FGAA+H V+VSCSAGNSGPGP TA NIAPWILTVGAST+DREFPAD
Sbjct: 289 YAPQYYRDSIAVGAFGAAKHNVLVSCSAGNSGPGPSTAVNIAPWILTVGASTVDREFPAD 348
Query: 182 AILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGN 241
ILGDGR+FGGVSLY GESLPDFKL LVY DCG R+CY+G LE SKVQGKIVVCDRGGN
Sbjct: 349 VILGDGRVFGGVSLYYGESLPDFKLPLVYAKDCGSRYCYIGSLESSKVQGKIVVCDRGGN 408
Query: 242 ARVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPT 301
ARVEKG+AVKL GGLGMI+ANT+ +GEEL+AD+HL+ ATMVG AGDKI+EYIKLSQYPT
Sbjct: 409 ARVEKGSAVKLTGGLGMIMANTEANGEELLADAHLLAATMVGQTAGDKIKEYIKLSQYPT 468
Query: 302 ATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLE 361
ATI FRGTVI SP AP+VA+FSSRGPN LT++ILKPDVIAPGVNILA WTG GPTDL+
Sbjct: 469 ATIEFRGTVIGGSPSAPQVASFSSRGPNHLTSQILKPDVIAPGVNILAGWTGRVGPTDLD 528
Query: 362 IDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKD 421
IDPRRV+FNIISGTSMSCPH SG+AALLRKAYP+WSPAAIKSALMTTAYN+DNSG NIKD
Sbjct: 529 IDPRRVEFNIISGTSMSCPHASGIAALLRKAYPEWSPAAIKSALMTTAYNVDNSGGNIKD 588
Query: 422 LASGEESTPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDVKRISVFVREPVSS 481
L SG+ES PFIHGAGHVDPNRALNPGLVYD+D ++Y+AFLCS+GYD +I+VF REP
Sbjct: 589 LGSGKESNPFIHGAGHVDPNRALNPGLVYDLDSNDYLAFLCSVGYDANQIAVFTREPAVE 648
Query: 482 DIC------TRALATPGNLNYPSFSVVFNSNNDVVKYKRVVKNVGSSVDAVYEVKVNAPP 535
+C T LA+PG+LNYPSF+V D+VKY+RVV NVGS VD VY VKVNAPP
Sbjct: 649 SVCEGKVGRTGKLASPGDLNYPSFAVKLGGEGDLVKYRRVVTNVGSEVDVVYTVKVNAPP 708
Query: 536 NVAVNVWPSKLAFSAEKKALAYEITFSSVGLDGLGVSPQQSGSIEWSDGVHLVRSPIAV 594
V V V PS L FS E K A+E+TFS LDG + GSIEW+DG H+VRSPIAV
Sbjct: 709 GVGVGVSPSTLVFSGENKTQAFEVTFSRAKLDG----SESFGSIEWTDGSHVVRSPIAV 763
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225442092|ref|XP_002272769.1| PREDICTED: subtilisin-like protease isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 929 bits (2402), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/610 (74%), Positives = 519/610 (85%), Gaps = 10/610 (1%)
Query: 1 TSKDFPASACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLV 60
T DFPASACN+KIIGARAF++GYE + RP+DE+ ESKSPRDTEGHGTHTASTAAGS+V
Sbjct: 166 TGPDFPASACNRKIIGARAFFKGYEGALGRPMDESVESKSPRDTEGHGTHTASTAAGSVV 225
Query: 61 SNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGAS 120
+ASLF++A+GEARGMAVKARIA YKICWS GCFDSDILAAMDQA+ADGVD+ISLSVGA+
Sbjct: 226 QDASLFEFAKGEARGMAVKARIAAYKICWSLGCFDSDILAAMDQAVADGVDIISLSVGAT 285
Query: 121 GYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPA 180
G AP+YD DSIAIG+FGA HGV+VSCSAGNSGP P TA NIAPWILTVGASTIDREFPA
Sbjct: 286 GLAPRYDHDSIAIGAFGAMDHGVLVSCSAGNSGPDPLTAVNIAPWILTVGASTIDREFPA 345
Query: 181 DAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGG 240
D +LGDGRIFGGVS+Y+G+ L D L LVY GDCG RFC+ G+L PS+V GKIV+CDRGG
Sbjct: 346 DVVLGDGRIFGGVSIYSGDPLKDTNLPLVYAGDCGSRFCFTGKLNPSQVSGKIVICDRGG 405
Query: 241 NARVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYP 300
NARVEKG AVK+A G GMILANT +SGEELIADSHL+PATMVG IAGDKI+EY+K +P
Sbjct: 406 NARVEKGTAVKMALGAGMILANTGDSGEELIADSHLLPATMVGQIAGDKIKEYVKSKAFP 465
Query: 301 TATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDL 360
TATIVFRGTVI SPPAPKVAAFSSRGPN LT EILKPDVIAPGVNILA WTGS PTDL
Sbjct: 466 TATIVFRGTVIGTSPPAPKVAAFSSRGPNHLTPEILKPDVIAPGVNILAGWTGSKAPTDL 525
Query: 361 EIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIK 420
++DPRRV+FNIISGTSMSCPHVSGLAALLRKAYP W+PAAIKSALMTTAYNLDNSG NI
Sbjct: 526 DVDPRRVEFNIISGTSMSCPHVSGLAALLRKAYPKWTPAAIKSALMTTAYNLDNSGNNIA 585
Query: 421 DLASGEESTPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDVKRISVFVREPVS 480
DLA+G +S+PFIHGAGHVDPNRAL PGLVYDID ++Y++FLC+IGYD +RI++FVR +
Sbjct: 586 DLATGNQSSPFIHGAGHVDPNRALYPGLVYDIDANDYISFLCAIGYDTERIAIFVRRHTT 645
Query: 481 SDICTRALATPGNLNYPSFSVVFNSNNDVV------KYKRVVKNVGSSVDAVYEVKVNAP 534
D T L TPG+LNYP+FSVVFN ++D V K KRVVKNVGSS +AVYEVKVN P
Sbjct: 646 VDCNTEKLHTPGDLNYPAFSVVFNFDHDPVHQGNEIKLKRVVKNVGSSANAVYEVKVNPP 705
Query: 535 PNVAVNVWPSKLAFSAEKKALAYEITFSSVGLDGLGVSPQQSGSIEWSDGVHLVRSPIAV 594
+ V+V P KL FS E + +YE++F+SV +G + GSIEWSDG H+VRSP+AV
Sbjct: 706 EGIEVDVSPKKLVFSKENQTASYEVSFTSVE-SYIG---SRFGSIEWSDGTHIVRSPVAV 761
Query: 595 RWIQGSVSSM 604
R+ Q +VSS+
Sbjct: 762 RFHQDAVSSI 771
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356519802|ref|XP_003528558.1| PREDICTED: subtilisin-like protease-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 927 bits (2397), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/603 (76%), Positives = 517/603 (85%), Gaps = 11/603 (1%)
Query: 1 TSKDFPASACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLV 60
+S DFP+S CN KIIGA+AFY+GYESY+ERPIDE++ESKSPRDTEGHGTHTASTAAG++V
Sbjct: 169 SSPDFPSSLCNNKIIGAKAFYKGYESYLERPIDESQESKSPRDTEGHGTHTASTAAGAVV 228
Query: 61 SNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGAS 120
SNASLF YA+GEARGMA KARIA YKICW GCFDSDILAAMD+A++DGV VISLSVGAS
Sbjct: 229 SNASLFHYAQGEARGMATKARIAAYKICWKLGCFDSDILAAMDEAVSDGVHVISLSVGAS 288
Query: 121 GYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPA 180
GYAPQY +DSIA+G+FGAA+H V+VSCSAGNSGPGP TA NIAPWILTVGAST+DREFPA
Sbjct: 289 GYAPQYYRDSIAVGAFGAARHNVLVSCSAGNSGPGPSTAVNIAPWILTVGASTVDREFPA 348
Query: 181 DAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGG 240
D ILGDGR+FGGVSLY GE LPDFKL LVY DCG R+CYMG LE SKVQGKIVVCDRGG
Sbjct: 349 DVILGDGRVFGGVSLYYGEKLPDFKLPLVYAKDCGSRYCYMGSLESSKVQGKIVVCDRGG 408
Query: 241 NARVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYP 300
NARVEKG+AVKLAGGLGMI+ANT+ +GEEL+AD+HL+ ATMVG AGDKI+EYIKLSQYP
Sbjct: 409 NARVEKGSAVKLAGGLGMIMANTEANGEELLADAHLLAATMVGQAAGDKIKEYIKLSQYP 468
Query: 301 TATIVFRGTVISPSPP-APKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTD 359
TATI FRGTVI S P AP+VA+FSSRGPN LT++ILKPDVIAPGVNILA WTG GPTD
Sbjct: 469 TATIEFRGTVIGGSEPSAPQVASFSSRGPNHLTSQILKPDVIAPGVNILAGWTGRVGPTD 528
Query: 360 LEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENI 419
L+IDPRRV+FNIISGTSMSCPH SG+AALLRKAYP+WSPAAIKSALMTTAYN+DNSG +I
Sbjct: 529 LDIDPRRVEFNIISGTSMSCPHASGIAALLRKAYPEWSPAAIKSALMTTAYNVDNSGGSI 588
Query: 420 KDLASGEESTPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDVKRISVFVREPV 479
KDL SG+ES PFIHGAGHVDPNRA+NPGLVYD+D +YVAFLCS+GYD +I+VF REP
Sbjct: 589 KDLGSGKESNPFIHGAGHVDPNRAINPGLVYDLDTGDYVAFLCSVGYDANQIAVFTREPA 648
Query: 480 SSDIC------TRALATPGNLNYPSFSVVFNSNNDVVKYKRVVKNVGSSVDAVYEVKVNA 533
+ +C T LA+PG+LNYPSF+V D+VK KRVV NVGS VDAVY VKVN
Sbjct: 649 AESVCEGKVGRTGKLASPGDLNYPSFAVKLGGEGDLVKNKRVVTNVGSEVDAVYTVKVNP 708
Query: 534 PPNVAVNVWPSKLAFSAEKKALAYEITFSSVGLDGLGVSPQQSGSIEWSDGVHLVRSPIA 593
PP V V V PS + FSAE K A+E+TFS V LDG + GSIEW+DG H+VRSPIA
Sbjct: 709 PPGVGVGVSPSTIVFSAENKTQAFEVTFSRVKLDG----SESFGSIEWTDGSHVVRSPIA 764
Query: 594 VRW 596
V W
Sbjct: 765 VTW 767
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|320117871|gb|ADW11233.1| subtilisin-like protease 2 [Phaseolus vulgaris] | Back alignment and taxonomy information |
|---|
Score = 920 bits (2379), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/614 (74%), Positives = 526/614 (85%), Gaps = 18/614 (2%)
Query: 2 SKDFPASACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVS 61
S+DFPAS+CN+KIIGA+AFY+GYE+Y++ PIDE+ ESKSPRDTEGHGTHT+STAAG +VS
Sbjct: 204 SRDFPASSCNRKIIGAKAFYKGYEAYLDGPIDESAESKSPRDTEGHGTHTSSTAAGGVVS 263
Query: 62 NASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGASG 121
NASLF YA+GEARGMA KARIA YKICW GCFDSDILAAMD+A+ADGV VISLSVG+SG
Sbjct: 264 NASLFHYAQGEARGMATKARIAAYKICWKYGCFDSDILAAMDEAVADGVHVISLSVGSSG 323
Query: 122 YAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPAD 181
YAPQY +DSIA+G+FGAA+H V+VSCSAGNSGPGPFTA NIAPWILTVGASTIDREFPAD
Sbjct: 324 YAPQYFRDSIALGAFGAARHNVLVSCSAGNSGPGPFTAVNIAPWILTVGASTIDREFPAD 383
Query: 182 AILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGN 241
ILGDGR+FGGVSLY GESLPDF+L LVY DCG+R+CY+G LE SKVQGKIVVCDRGGN
Sbjct: 384 VILGDGRVFGGVSLYYGESLPDFQLRLVYAKDCGNRYCYLGSLEASKVQGKIVVCDRGGN 443
Query: 242 ARVEKGAAVKL--AGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQY 299
ARVEKG+AVKL AGGLG+I+ANT ESGEEL+AD+HL+ ATMVG IAGD+I++YI+LSQY
Sbjct: 444 ARVEKGSAVKLAGAGGLGVIMANTAESGEELLADAHLLAATMVGQIAGDEIKKYIRLSQY 503
Query: 300 PTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTD 359
PTATI F+GTVI SP AP+VA+FSSRGPN LT+EILKPDVIAPGVNILA WTG GPTD
Sbjct: 504 PTATIEFKGTVIGGSPSAPQVASFSSRGPNHLTSEILKPDVIAPGVNILAGWTGRVGPTD 563
Query: 360 LEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENI 419
L+IDPRRV+FNIISGTSMSCPH SG+AALLRKAYP+WSPAAIKSALMTTAYN+DNSG NI
Sbjct: 564 LDIDPRRVEFNIISGTSMSCPHASGIAALLRKAYPEWSPAAIKSALMTTAYNVDNSGGNI 623
Query: 420 KDLASGEESTPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDVKRISVFVREPV 479
KDL +G+ES PF HGAGHVDPNRALNPGLVYD D+++Y+AFLCSIGYD +I+VF REP
Sbjct: 624 KDLGTGKESNPFTHGAGHVDPNRALNPGLVYDSDINDYLAFLCSIGYDANQIAVFTREPA 683
Query: 480 SSDIC------TRALATPGNLNYPSFSVVFNSNNDVVKYKRVVKNVGSSVDAVYEVKVNA 533
+++ C T LA+PG+LNYPSFSV +D+VKYKRVV NVGS VDAVY VKVNA
Sbjct: 684 AANPCEGKVGRTGRLASPGDLNYPSFSVELGRGSDLVKYKRVVTNVGSVVDAVYTVKVNA 743
Query: 534 PPNVAVNVWPSKLAFSAEKKALAYEITFSSVGLDGLGVSPQQS---GSIEWSDGVHLVRS 590
PP V V V P+ L FS E K A+E+ FS V+P S GSIEW+DG H+VRS
Sbjct: 744 PPGVDVTVAPNTLVFSGENKTQAFEVAFSR-------VTPATSDSFGSIEWTDGSHVVRS 796
Query: 591 PIAVRWIQGSVSSM 604
PIAVRW S SS+
Sbjct: 797 PIAVRWSGDSSSSL 810
|
Source: Phaseolus vulgaris Species: Phaseolus vulgaris Genus: Phaseolus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147791956|emb|CAN75240.1| hypothetical protein VITISV_014207 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 886 bits (2290), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/583 (73%), Positives = 493/583 (84%), Gaps = 10/583 (1%)
Query: 28 MERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKI 87
+ RP+DE+ ESKSPRDTEGHGTHTASTAAGS+V +ASLF++A+GEARGMAVKARIA YKI
Sbjct: 1 LGRPMDESAESKSPRDTEGHGTHTASTAAGSVVQDASLFEFAKGEARGMAVKARIAAYKI 60
Query: 88 CWSPGCFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSC 147
CWS GCFDSDILAAMDQA+ADGVD+ISLSVGA+G AP+YD DSIAIG+FGA HGV+VSC
Sbjct: 61 CWSLGCFDSDILAAMDQAVADGVDIISLSVGATGLAPRYDHDSIAIGAFGAMDHGVLVSC 120
Query: 148 SAGNSGPGPFTATNIAPWILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLH 207
SAGNSGP P TA NIAPWILTVGASTIDREFPAD +LGDGRIFGGVS+Y+G+ L D L
Sbjct: 121 SAGNSGPDPLTAVNIAPWILTVGASTIDREFPADVVLGDGRIFGGVSIYSGDPLKDTNLP 180
Query: 208 LVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESG 267
LVY GDCG RFC+ G+L PS+V GKIV+CDRGGNARVEKG AVK+A G GMILANT +SG
Sbjct: 181 LVYAGDCGSRFCFTGKLNPSQVSGKIVICDRGGNARVEKGTAVKMALGAGMILANTGDSG 240
Query: 268 EELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRG 327
EELIADSHL+PATMVG IAGDKI+EY+K +PTATI FRGTVI SPPAPKVAAFSSRG
Sbjct: 241 EELIADSHLLPATMVGQIAGDKIKEYVKSKAFPTATIAFRGTVIGTSPPAPKVAAFSSRG 300
Query: 328 PNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAA 387
PN LT EILKPDVIAPGVNILA WTGS PTDL++DPRRV+FNIISGTSMSCPHVSGLAA
Sbjct: 301 PNHLTPEILKPDVIAPGVNILAGWTGSKAPTDLDVDPRRVEFNIISGTSMSCPHVSGLAA 360
Query: 388 LLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALNPG 447
LLRKAYP W+PAAIKSALMTTAYNLDNSG NI DLA+G +S+PFIHGAGHVDPNRAL PG
Sbjct: 361 LLRKAYPKWTPAAIKSALMTTAYNLDNSGNNIADLATGNQSSPFIHGAGHVDPNRALYPG 420
Query: 448 LVYDIDVSEYVAFLCSIGYDVKRISVFVREPVSSDICTRALATPGNLNYPSFSVVFNSNN 507
LVYDID ++Y++FLC+IGYD +RI++FVR + D T L TPG+LNYP+FSVVFN ++
Sbjct: 421 LVYDIDANDYISFLCAIGYDTERIAIFVRRHTTVDCNTEKLHTPGDLNYPAFSVVFNFDH 480
Query: 508 DVV------KYKRVVKNVGSSVDAVYEVKVNAPPNVAVNVWPSKLAFSAEKKALAYEITF 561
D V K KRVVKNVGSS +AVYEVKVN P + V+V P KL FS E + +YE++F
Sbjct: 481 DPVHQGNEIKLKRVVKNVGSSANAVYEVKVNPPEGIEVDVSPKKLVFSKENQTASYEVSF 540
Query: 562 SSVGLDGLGVSPQQSGSIEWSDGVHLVRSPIAVRWIQGSVSSM 604
+SV + GSIEWSDG H+VRSP+AVR+ Q +VSS+
Sbjct: 541 TSVE----SYIGSRFGSIEWSDGTHIVRSPVAVRFHQDAVSSI 579
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22331076|ref|NP_566473.2| Subtilase family protein [Arabidopsis thaliana] gi|11994380|dbj|BAB02339.1| cucumisin-like serine protease; subtilisin-like protease [Arabidopsis thaliana] gi|44917461|gb|AAS49055.1| At3g14067 [Arabidopsis thaliana] gi|45773916|gb|AAS76762.1| At3g14067 [Arabidopsis thaliana] gi|110738008|dbj|BAF00939.1| putative subtilisin-like serine proteinase [Arabidopsis thaliana] gi|332641940|gb|AEE75461.1| Subtilase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 885 bits (2286), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/605 (73%), Positives = 505/605 (83%), Gaps = 4/605 (0%)
Query: 4 DFPASACNKKIIGARAFYRGYESYME-RPIDETEESKSPRDTEGHGTHTASTAAGSLVSN 62
DFPAS+CN+K+IGARAFYRGY + +ES+SPRDTEGHGTHTASTAAGS+V+N
Sbjct: 173 DFPASSCNRKLIGARAFYRGYLTQRNGTKKHAAKESRSPRDTEGHGTHTASTAAGSVVAN 232
Query: 63 ASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGASGY 122
ASL+ YARG A GMA KARIA YKICW+ GC+DSDILAAMDQA+ADGV VISLSVGASG
Sbjct: 233 ASLYQYARGTATGMASKARIAAYKICWTGGCYDSDILAAMDQAVADGVHVISLSVGASGS 292
Query: 123 APQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPADA 182
AP+Y DSIAIG+FGA +HG+VVSCSAGNSGP P TATNIAPWILTVGAST+DREF A+A
Sbjct: 293 APEYHTDSIAIGAFGATRHGIVVSCSAGNSGPNPETATNIAPWILTVGASTVDREFAANA 352
Query: 183 ILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNA 242
I GDG++F G SLYAGESLPD +L LVY GDCG R CY G+L S V+GKIV+CDRGGNA
Sbjct: 353 ITGDGKVFTGTSLYAGESLPDSQLSLVYSGDCGSRLCYPGKLNSSLVEGKIVLCDRGGNA 412
Query: 243 RVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTA 302
RVEKG+AVKLAGG GMILANT ESGEEL ADSHL+PATMVGA AGD+IR+YIK S PTA
Sbjct: 413 RVEKGSAVKLAGGAGMILANTAESGEELTADSHLVPATMVGAKAGDQIRDYIKTSDSPTA 472
Query: 303 TIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEI 362
I F GT+I PSPP+P+VAAFSSRGPN LT ILKPDVIAPGVNILA WTG GPTDL+I
Sbjct: 473 KISFLGTLIGPSPPSPRVAAFSSRGPNHLTPVILKPDVIAPGVNILAGWTGMVGPTDLDI 532
Query: 363 DPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDL 422
DPRRV FNIISGTSMSCPHVSGLAALLRKA+PDWSPAAIKSAL+TTAY+++NSGE I+DL
Sbjct: 533 DPRRVQFNIISGTSMSCPHVSGLAALLRKAHPDWSPAAIKSALVTTAYDVENSGEPIEDL 592
Query: 423 ASGEESTPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDVKRISVFVREPVSSD 482
A+G+ S FIHGAGHVDPN+ALNPGLVYDI+V EYVAFLC++GY+ I VF+++P D
Sbjct: 593 ATGKSSNSFIHGAGHVDPNKALNPGLVYDIEVKEYVAFLCAVGYEFPGILVFLQDPTLYD 652
Query: 483 IC-TRALATPGNLNYPSFSVVFNSNNDVVKYKRVVKNVGSSVDAVYEVKVNAPPNVAVNV 541
C T L T G+LNYPSFSVVF S +VVKYKRVVKNVGS+VDAVYEV V +P NV ++V
Sbjct: 653 ACETSKLRTAGDLNYPSFSVVFASTGEVVKYKRVVKNVGSNVDAVYEVGVKSPANVEIDV 712
Query: 542 WPSKLAFSAEKKALAYEITFSSVGLDGLGVSP--QQSGSIEWSDGVHLVRSPIAVRWIQG 599
PSKLAFS EK L YE+TF SV L G S + GSIEW+DG H+V+SP+AV+W QG
Sbjct: 713 SPSKLAFSKEKSVLEYEVTFKSVVLGGGVGSVPGHEFGSIEWTDGEHVVKSPVAVQWGQG 772
Query: 600 SVSSM 604
SV S
Sbjct: 773 SVQSF 777
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297834254|ref|XP_002885009.1| subtilase family protein [Arabidopsis lyrata subsp. lyrata] gi|297330849|gb|EFH61268.1| subtilase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 884 bits (2285), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/605 (73%), Positives = 506/605 (83%), Gaps = 4/605 (0%)
Query: 4 DFPASACNKKIIGARAFYRGYESYMERPIDET-EESKSPRDTEGHGTHTASTAAGSLVSN 62
DFPAS+CN+K+IGARA+Y+GY + +ES+SPRDTEGHGTHTASTAAGS+V+N
Sbjct: 173 DFPASSCNRKLIGARAYYKGYLTQRNGTKKHAAKESRSPRDTEGHGTHTASTAAGSVVAN 232
Query: 63 ASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGASGY 122
ASLF YA G ARGMA KARIA YKICWS GC+DSDILAAMDQA+ADGV VISLSVGASGY
Sbjct: 233 ASLFQYAPGTARGMASKARIAAYKICWSSGCYDSDILAAMDQAVADGVHVISLSVGASGY 292
Query: 123 APQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPADA 182
AP+Y DSIAIG+FGA +HG+VVSCSAGNSGPGP TATNIAPWILTVGAST+DREF A+A
Sbjct: 293 APEYHTDSIAIGAFGATRHGIVVSCSAGNSGPGPETATNIAPWILTVGASTVDREFSANA 352
Query: 183 ILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNA 242
I GDG++F G SLYAGESLPD +L LVY GDCG R CY G+L S V+GKIV+CDRGGNA
Sbjct: 353 ITGDGKVFTGTSLYAGESLPDSQLSLVYSGDCGSRLCYPGKLNSSLVEGKIVLCDRGGNA 412
Query: 243 RVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTA 302
RVEKG+AVK+AGG GMILANT ESGEEL ADSHL+PATMVGA AGD+IR+YIK S PTA
Sbjct: 413 RVEKGSAVKIAGGAGMILANTAESGEELTADSHLVPATMVGAKAGDQIRDYIKTSDSPTA 472
Query: 303 TIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEI 362
I F GT+I PSPP+P+VAAFSSRGPN LT ILKPDVIAPGVNILA WTG GPTDL+I
Sbjct: 473 KISFLGTLIGPSPPSPRVAAFSSRGPNHLTPVILKPDVIAPGVNILAGWTGMVGPTDLDI 532
Query: 363 DPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDL 422
DPRRV FNIISGTSMSCPHVSGLAALLRKA+PDWSPAAIKSAL+TTAY+++NSGE I+DL
Sbjct: 533 DPRRVQFNIISGTSMSCPHVSGLAALLRKAHPDWSPAAIKSALVTTAYDVENSGEPIEDL 592
Query: 423 ASGEESTPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDVKRISVFVREPVSSD 482
A+G+ S FIHGAGHVDPN+ALNPGLVYDI+V EYVAFLC++GY+ I VF+++P +
Sbjct: 593 ATGKSSNSFIHGAGHVDPNKALNPGLVYDIEVKEYVAFLCAVGYEFPGILVFLQDPTLFN 652
Query: 483 IC-TRALATPGNLNYPSFSVVFNSNNDVVKYKRVVKNVGSSVDAVYEVKVNAPPNVAVNV 541
C T L T G+LNYPSFSVVF S +VVKYKR VKNVGS+VDAVYEV V +P NV ++V
Sbjct: 653 ACETSKLRTAGDLNYPSFSVVFGSTGEVVKYKRAVKNVGSNVDAVYEVGVKSPANVEIDV 712
Query: 542 WPSKLAFSAEKKALAYEITFSSVGLDGLGVSP--QQSGSIEWSDGVHLVRSPIAVRWIQG 599
PSKLAFS EK L YE+TF SV L G S + GSIEW+DG H+V+SP+AV+W QG
Sbjct: 713 SPSKLAFSKEKSELEYEVTFKSVVLGGGVGSVPGHEFGSIEWADGEHVVKSPVAVQWGQG 772
Query: 600 SVSSM 604
SV S
Sbjct: 773 SVQSF 777
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110740849|dbj|BAE98521.1| putative subtilisin-like serine proteinase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 884 bits (2283), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/605 (73%), Positives = 504/605 (83%), Gaps = 4/605 (0%)
Query: 4 DFPASACNKKIIGARAFYRGYESYMERPIDETE-ESKSPRDTEGHGTHTASTAAGSLVSN 62
DFPAS+CN+K+IGARAFYRGY + ES+SPRDTEGHGTHTASTAAGS+V+N
Sbjct: 173 DFPASSCNRKLIGARAFYRGYLTQRNGTKKHAAMESRSPRDTEGHGTHTASTAAGSVVAN 232
Query: 63 ASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGASGY 122
ASL+ YARG A GMA KARIA YKICW+ GC+DSDILAAMDQA+ADGV VISLSVGASG
Sbjct: 233 ASLYQYARGTATGMASKARIAAYKICWTGGCYDSDILAAMDQAVADGVHVISLSVGASGS 292
Query: 123 APQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPADA 182
AP+Y DSIAIG+FGA +HG+VVSCSAGNSGP P TATNIAPWILTVGAST+DREF A+A
Sbjct: 293 APEYHTDSIAIGAFGATRHGIVVSCSAGNSGPNPETATNIAPWILTVGASTVDREFAANA 352
Query: 183 ILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNA 242
I GDG++F G SLYAGESLPD +L LVY GDCG R CY G+L S V+GKIV+CDRGGNA
Sbjct: 353 ITGDGKVFTGTSLYAGESLPDSQLSLVYSGDCGSRLCYPGKLNSSLVEGKIVLCDRGGNA 412
Query: 243 RVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTA 302
RVEKG+AVKLAGG GMILANT ESGEEL ADSHL+PATMVGA AGD+IR+YIK S PTA
Sbjct: 413 RVEKGSAVKLAGGAGMILANTAESGEELTADSHLVPATMVGAKAGDQIRDYIKTSDSPTA 472
Query: 303 TIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEI 362
I F GT+I PSPP+P+VAAFSSRGPN LT ILKPDVIAPGVNILA WTG GPTDL+I
Sbjct: 473 KISFLGTLIGPSPPSPRVAAFSSRGPNHLTPVILKPDVIAPGVNILAGWTGMVGPTDLDI 532
Query: 363 DPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDL 422
DPRRV FNIISGTSMSCPHVSGLAALLRKA+PDWSPAAIKSAL+TTAY+++NSGE I+DL
Sbjct: 533 DPRRVQFNIISGTSMSCPHVSGLAALLRKAHPDWSPAAIKSALVTTAYDVENSGEPIEDL 592
Query: 423 ASGEESTPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDVKRISVFVREPVSSD 482
A+G+ S FIHGAGHVDPN+ALNPGLVYDI+V EYVAFLC++GY+ I VF+++P D
Sbjct: 593 ATGKSSNSFIHGAGHVDPNKALNPGLVYDIEVKEYVAFLCAVGYEFPGILVFLQDPTLYD 652
Query: 483 IC-TRALATPGNLNYPSFSVVFNSNNDVVKYKRVVKNVGSSVDAVYEVKVNAPPNVAVNV 541
C T L T G+LNYPSFSVVF S +VVKYKRVVKNVGS+VDAVYEV V +P NV ++V
Sbjct: 653 ACETSKLRTAGDLNYPSFSVVFASTGEVVKYKRVVKNVGSNVDAVYEVGVKSPANVEIDV 712
Query: 542 WPSKLAFSAEKKALAYEITFSSVGLDGLGVSP--QQSGSIEWSDGVHLVRSPIAVRWIQG 599
PSKLAFS EK L YE+TF SV L G S + GSIEW+DG H+V+SP+AV+W QG
Sbjct: 713 SPSKLAFSKEKSVLEYEVTFKSVVLGGGVGSVPGHEFGSIEWTDGEHVVKSPVAVQWGQG 772
Query: 600 SVSSM 604
SV S
Sbjct: 773 SVQSF 777
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222424791|dbj|BAH20348.1| AT3G14067 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 877 bits (2267), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/601 (73%), Positives = 501/601 (83%), Gaps = 4/601 (0%)
Query: 8 SACNKKIIGARAFYRGYESYME-RPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLF 66
S+CN+K+IGARAFYRGY + +ES+SPRDTEGHGTHTASTAAGS+V+NASL+
Sbjct: 1 SSCNRKLIGARAFYRGYLTQRNGTKKHAAKESRSPRDTEGHGTHTASTAAGSVVANASLY 60
Query: 67 DYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGASGYAPQY 126
YARG A GMA KARIA YKICW+ GC+DSDILAAMDQA+ADGV VISLSVGASG AP+Y
Sbjct: 61 QYARGTATGMASKARIAAYKICWTGGCYDSDILAAMDQAVADGVHVISLSVGASGSAPEY 120
Query: 127 DQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPADAILGD 186
DSIAIG+FGA +HG+VVSCSAGNSGP P TATNIAPWILTVGAST+DREF A+AI GD
Sbjct: 121 HTDSIAIGAFGATRHGIVVSCSAGNSGPNPETATNIAPWILTVGASTVDREFAANAITGD 180
Query: 187 GRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEK 246
G++F G SLYAGESLPD +L LVY GDCG R CY G+L S V+GKIV+CDRGGNARVEK
Sbjct: 181 GKVFTGTSLYAGESLPDSQLSLVYSGDCGSRLCYPGKLNSSLVEGKIVLCDRGGNARVEK 240
Query: 247 GAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVF 306
G+AVKLAGG GMILANT ESGEEL ADSHL+PATMVGA AGD+IR+YIK S PTA I F
Sbjct: 241 GSAVKLAGGAGMILANTAESGEELTADSHLVPATMVGAKAGDQIRDYIKTSDSPTAKISF 300
Query: 307 RGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRR 366
GT+I PSPP+P+VAAFSSRGPN LT ILKPDVIAPGVNILA WTG GPTDL+IDPRR
Sbjct: 301 LGTLIGPSPPSPRVAAFSSRGPNHLTPVILKPDVIAPGVNILAGWTGMVGPTDLDIDPRR 360
Query: 367 VDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGE 426
V FNIISGTSMSCPHVSGLAALLRKA+PDWSPAAIKSAL+TTAY+++NSGE I+DLA+G+
Sbjct: 361 VQFNIISGTSMSCPHVSGLAALLRKAHPDWSPAAIKSALVTTAYDVENSGEPIEDLATGK 420
Query: 427 ESTPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDVKRISVFVREPVSSDIC-T 485
S FIHGAGHVDPN+ALNPGLVYDI+V EYVAFLC++GY+ I VF+++P D C T
Sbjct: 421 SSNSFIHGAGHVDPNKALNPGLVYDIEVKEYVAFLCAVGYEFPGILVFLQDPTLYDACDT 480
Query: 486 RALATPGNLNYPSFSVVFNSNNDVVKYKRVVKNVGSSVDAVYEVKVNAPPNVAVNVWPSK 545
L T G+LNYPSFSVVF S +VVKYKRVVKNVGS+VDAVYEV V +P NV ++V PSK
Sbjct: 481 SKLRTAGDLNYPSFSVVFASTGEVVKYKRVVKNVGSNVDAVYEVGVKSPANVEIDVSPSK 540
Query: 546 LAFSAEKKALAYEITFSSVGLDGLGVSP--QQSGSIEWSDGVHLVRSPIAVRWIQGSVSS 603
LAFS EK L YE+TF SV L G S + GSIEW+DG H+V+SP+AV+W QGSV S
Sbjct: 541 LAFSKEKSVLEYEVTFKSVVLGGGVGSVPGHEFGSIEWTDGEHVVKSPVAVQWGQGSVQS 600
Query: 604 M 604
Sbjct: 601 F 601
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 604 | ||||||
| TAIR|locus:2087512 | 777 | AT3G14067 "AT3G14067" [Arabido | 0.993 | 0.772 | 0.697 | 1.1e-222 | |
| UNIPROTKB|Q6K7G5 | 782 | OJ1293_A01.13 "Putative subtil | 0.998 | 0.771 | 0.632 | 1.7e-201 | |
| TAIR|locus:2064696 | 754 | AT2G05920 "AT2G05920" [Arabido | 0.971 | 0.778 | 0.530 | 4e-161 | |
| TAIR|locus:2158187 | 757 | ARA12 [Arabidopsis thaliana (t | 0.961 | 0.767 | 0.535 | 5.1e-161 | |
| UNIPROTKB|Q69P78 | 770 | OJ1344_B01.33 "Putative serine | 0.968 | 0.759 | 0.508 | 4.4e-155 | |
| UNIPROTKB|Q75I27 | 765 | OSJNBa0091E13.30 "Putaive subt | 0.961 | 0.759 | 0.510 | 3.2e-152 | |
| UNIPROTKB|Q94H95 | 764 | OSJNBb0048A17.11 "cDNA clone:J | 0.961 | 0.760 | 0.511 | 4.1e-152 | |
| UNIPROTKB|Q6K7F4 | 790 | OJ1293_A01.34 "Putative subtil | 0.970 | 0.741 | 0.5 | 5.2e-152 | |
| UNIPROTKB|Q7XTY8 | 776 | OSJNBa0019K04.9 "Os04g0573300 | 0.970 | 0.755 | 0.505 | 6.7e-152 | |
| UNIPROTKB|Q8LSS2 | 773 | OSJNBa0011L09.20 "Subtilisin N | 0.965 | 0.754 | 0.511 | 1.8e-149 |
| TAIR|locus:2087512 AT3G14067 "AT3G14067" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2150 (761.9 bits), Expect = 1.1e-222, P = 1.1e-222
Identities = 421/604 (69%), Positives = 478/604 (79%)
Query: 4 DFPASACNKKIIGARAFYRGYESYMERPIDET-EESKSPRDTEGHGTHTASTAAGSLVSN 62
DFPAS+CN+K+IGARAFYRGY + +ES+SPRDTEGHGTHTASTAAGS+V+N
Sbjct: 173 DFPASSCNRKLIGARAFYRGYLTQRNGTKKHAAKESRSPRDTEGHGTHTASTAAGSVVAN 232
Query: 63 ASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGASGY 122
ASL+ YARG A GMA KARIA YKICW+ GC+DSDILAAMDQA+ADGV VISLSVGASG
Sbjct: 233 ASLYQYARGTATGMASKARIAAYKICWTGGCYDSDILAAMDQAVADGVHVISLSVGASGS 292
Query: 123 APQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPADA 182
AP+Y DSIAIG+FGA +HG+VVSCSAGNSGP P TATNIAPWILTVGAST+DREF A+A
Sbjct: 293 APEYHTDSIAIGAFGATRHGIVVSCSAGNSGPNPETATNIAPWILTVGASTVDREFAANA 352
Query: 183 ILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNA 242
I GDG++F G SLYAGESLPD +L LVY GDCG R CY G+L S V+GKIV+CDRGGNA
Sbjct: 353 ITGDGKVFTGTSLYAGESLPDSQLSLVYSGDCGSRLCYPGKLNSSLVEGKIVLCDRGGNA 412
Query: 243 RVEXXXXXXXXXXXXMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTA 302
RVE MILANT ESGEEL ADSHL+PATMVGA AGD+IR+YIK S PTA
Sbjct: 413 RVEKGSAVKLAGGAGMILANTAESGEELTADSHLVPATMVGAKAGDQIRDYIKTSDSPTA 472
Query: 303 TIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEI 362
I F GT+I PSPP+P+VAAFSSRGPN LT ILKPDVIAPGVNILA WTG GPTDL+I
Sbjct: 473 KISFLGTLIGPSPPSPRVAAFSSRGPNHLTPVILKPDVIAPGVNILAGWTGMVGPTDLDI 532
Query: 363 DPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDL 422
DPRRV FNIISGTSMSCPHVSGLAALLRKA+PDWSPAAIKSAL+TTAY+++NSGE I+DL
Sbjct: 533 DPRRVQFNIISGTSMSCPHVSGLAALLRKAHPDWSPAAIKSALVTTAYDVENSGEPIEDL 592
Query: 423 ASGEESTPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDVKRISVFVREPVSSD 482
A+G+ S FIHGAGHVDPN+ALNPGLVYDI+V EYVAFLC++GY+ I VF+++P D
Sbjct: 593 ATGKSSNSFIHGAGHVDPNKALNPGLVYDIEVKEYVAFLCAVGYEFPGILVFLQDPTLYD 652
Query: 483 IC-TRALATPGNLNYPXXXXXXXXXXXXXKYKRVVKNVGSSVDAVYEVKXXXXXXXXXXX 541
C T L T G+LNYP KYKRVVKNVGS+VDAVYEV
Sbjct: 653 ACETSKLRTAGDLNYPSFSVVFASTGEVVKYKRVVKNVGSNVDAVYEVGVKSPANVEIDV 712
Query: 542 WPSKLAFSAEKKALAYEITFSSVGLDG-LGVSP-QQSGSIEWSDGVHLVRSPIAVRWIQG 599
PSKLAFS EK L YE+TF SV L G +G P + GSIEW+DG H+V+SP+AV+W QG
Sbjct: 713 SPSKLAFSKEKSVLEYEVTFKSVVLGGGVGSVPGHEFGSIEWTDGEHVVKSPVAVQWGQG 772
Query: 600 SVSS 603
SV S
Sbjct: 773 SVQS 776
|
|
| UNIPROTKB|Q6K7G5 OJ1293_A01.13 "Putative subtilisin-like proteinase" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1950 (691.5 bits), Expect = 1.7e-201, P = 1.7e-201
Identities = 383/606 (63%), Positives = 449/606 (74%)
Query: 1 TSKDFPASA-CNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSL 59
++ F ASA CN K+IGA+ FY+GYE+ + IDETEESKSP DTEGHGTHTASTAAGS
Sbjct: 178 STASFNASAYCNNKLIGAKFFYKGYEAALGHAIDETEESKSPLDTEGHGTHTASTAAGSP 237
Query: 60 VSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGA 119
V+ A FDYARG+A GM+ A IA YKICW GC+DSDILAAMD+A+ADGVDVISLSVGA
Sbjct: 238 VTGAGFFDYARGQAVGMSPAAHIAAYKICWKSGCYDSDILAAMDEAVADGVDVISLSVGA 297
Query: 120 SGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFP 179
GYAP + +DSIAIGSF A G+VVS SAGNSGPG +TATNIAPWILTVGASTIDREFP
Sbjct: 298 GGYAPSFFRDSIAIGSFHAVSKGIVVSASAGNSGPGEYTATNIAPWILTVGASTIDREFP 357
Query: 180 ADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRG 239
AD +LG+G+++GGVSLY+GE L L +VY GDCG R C +G L+P+KV GKIV+C+RG
Sbjct: 358 ADVVLGNGQVYGGVSLYSGEPLNSTLLPVVYAGDCGSRLCIIGELDPAKVSGKIVLCERG 417
Query: 240 GNARVEXXXXXXXXXXXXMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQY 299
NARV MIL NT ESGEEL+ADSHL+PATMVG GDKI+ Y++
Sbjct: 418 SNARVAKGGAVKVAGGAGMILVNTAESGEELVADSHLVPATMVGQKFGDKIKYYVQSDPS 477
Query: 300 PTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTD 359
PTATIVFRGTVI SP AP+VAAFSSRGPN EILKPDVIAPGVNILAAWTG + PTD
Sbjct: 478 PTATIVFRGTVIGKSPSAPRVAAFSSRGPNYRAPEILKPDVIAPGVNILAAWTGESAPTD 537
Query: 360 LEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENI 419
L+IDPRRV+FNIISGTSMSCPHVSGLAALLR+A PDWSPAAIKSALMTTAYN+DNS I
Sbjct: 538 LDIDPRRVEFNIISGTSMSCPHVSGLAALLRQAQPDWSPAAIKSALMTTAYNVDNSSAVI 597
Query: 420 KDLASGEESTPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDVKRISVFVREPV 479
KDLA+G ESTPF+ GAGHVDPNRAL+PGLVYD +YV+FLC++GY IS+F +
Sbjct: 598 KDLATGTESTPFVRGAGHVDPNRALDPGLVYDAGTEDYVSFLCTLGYSPSIISLFTTDGS 657
Query: 480 SSDICTRALATPGNLNYPXXXXXXXXXXXXXKYKRVVKNVGSSVDAVYEVKXXXXXXXXX 539
++ C+ G+LNYP Y RVV+NVGS+ +AVYE K
Sbjct: 658 VAN-CSTKFPRTGDLNYPAFAVVLSSYKDSVTYHRVVRNVGSNANAVYEAKIDSPSGVDV 716
Query: 540 XXWPSKLAFSAEKKALAYEITFSSVGLDGLGVSPQQSGSIEWSDGVHLVRSPIAVRW-IQ 598
PSKL F ++L+Y+IT ++ G + + GS+ WSDGVH V SPIAV W
Sbjct: 717 TVSPSKLVFDESHQSLSYDITIAASGNPVIVDTEYTFGSVTWSDGVHDVTSPIAVTWPSN 776
Query: 599 GSVSSM 604
G +SM
Sbjct: 777 GRAASM 782
|
|
| TAIR|locus:2064696 AT2G05920 "AT2G05920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1569 (557.4 bits), Expect = 4.0e-161, P = 4.0e-161
Identities = 318/599 (53%), Positives = 398/599 (66%)
Query: 1 TSKDFPASACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLV 60
+ DF + CNKK+IGAR+F +G++ ES SPRD +GHGTHT++TAAGS V
Sbjct: 162 SGSDFDSKLCNKKLIGARSFSKGFQMASGGGFSSKRESVSPRDVDGHGTHTSTTAAGSAV 221
Query: 61 SNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGAS 120
NAS YA G ARGMA +AR+A YK+CWS GCF SDILAAMD+AI DGVDV+SLS+G
Sbjct: 222 RNASFLGYAAGTARGMATRARVATYKVCWSTGCFGSDILAAMDRAILDGVDVLSLSLGG- 280
Query: 121 GYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPA 180
G AP Y +D+IAIG+F A + GV VSCSAGNSGP + N+APW++TVGA T+DR+FPA
Sbjct: 281 GSAPYY-RDTIAIGAFSAMERGVFVSCSAGNSGPTRASVANVAPWVMTVGAGTLDRDFPA 339
Query: 181 DAILGDGRIFGGVSLYAGESLPDFKLHLVY--GGDCGDRFCYMGRLEPSKVQGKIVVCDR 238
A LG+G+ GVSLY+G + L LVY G C G L+ S V+GKIVVCDR
Sbjct: 340 FANLGNGKRLTGVSLYSGVGMGTKPLELVYNKGNSSSSNLCLPGSLDSSIVRGKIVVCDR 399
Query: 239 GGNARVEXXXXXXXXXXXXMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQ 298
G NARVE MI+ANT SGEEL+ADSHL+PA VG GD +REY+K
Sbjct: 400 GVNARVEKGAVVRDAGGLGMIMANTAASGEELVADSHLLPAIAVGKKTGDLLREYVKSDS 459
Query: 299 YPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPT 358
PTA +VF+GTV+ P +P VAAFSSRGPN++T EILKPDVI PGVNILA W+ + GPT
Sbjct: 460 KPTALLVFKGTVLDVKP-SPVVAAFSSRGPNTVTPEILKPDVIGPGVNILAGWSDAIGPT 518
Query: 359 DLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGEN 418
L+ D RR FNI+SGTSMSCPH+SGLA LL+ A+P+WSP+AIKSALMTTAY LDN+
Sbjct: 519 GLDKDSRRTQFNIMSGTSMSCPHISGLAGLLKAAHPEWSPSAIKSALMTTAYVLDNTNAP 578
Query: 419 IKDLASGEESTPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDVKRISVFVREP 478
+ D A S P+ HG+GHVDP +AL+PGLVYDI EY+ FLCS+ Y V I V+ P
Sbjct: 579 LHDAADNSLSNPYAHGSGHVDPQKALSPGLVYDISTEEYIRFLCSLDYTVDHIVAIVKRP 638
Query: 479 VSSDICTRALATPGNLNYPXXXXXXXXXXXXXKYKRVVKNVGSSVDAVYEVKXXXXXXXX 538
S C++ + PG LNYP +Y R V NVG++ +VY+V
Sbjct: 639 --SVNCSKKFSDPGQLNYPSFSVLFGGKRVV-RYTREVTNVGAA-SSVYKVTVNGAPSVG 694
Query: 539 XXXWPSKLAFSAEKKALAYEITFSSVGLDGLGVSPQ-QSGSIEWSDGVHLVRSPIAVRW 596
PSKL+F + + Y +TF V G+ ++ + + GSI WS+ H VRSP+A W
Sbjct: 695 ISVKPSKLSFKSVGEKKRYTVTF--VSKKGVSMTNKAEFGSITWSNPQHEVRSPVAFSW 751
|
|
| TAIR|locus:2158187 ARA12 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1568 (557.0 bits), Expect = 5.1e-161, P = 5.1e-161
Identities = 321/599 (53%), Positives = 406/599 (67%)
Query: 4 DFPASACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNA 63
+F AS CN+K+IGAR F RGYES M PIDE++ES+SPRD +GHGTHT+STAAGS+V A
Sbjct: 170 NFTASLCNRKLIGARFFARGYESTMG-PIDESKESRSPRDDDGHGTHTSSTAAGSVVEGA 228
Query: 64 SLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGASGYA 123
SL YA G ARGMA +AR+AVYK+CW GCF SDILAA+D+AIAD V+V+S+S+G G
Sbjct: 229 SLLGYASGTARGMAPRARVAVYKVCWLGGCFSSDILAAIDKAIADNVNVLSMSLG--GGM 286
Query: 124 PQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPADAI 183
Y +D +AIG+F A + G++VSCSAGN+GP + +N+APWI TVGA T+DR+FPA AI
Sbjct: 287 SDYYRDGVAIGAFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAI 346
Query: 184 LGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGD----RFCYMGRLEPSKVQGKIVVCDRG 239
LG+G+ F GVSL+ GE+LPD L +Y G+ + C G L P KV+GKIV+CDRG
Sbjct: 347 LGNGKNFTGVSLFKGEALPDKLLPFIYAGNASNATNGNLCMTGTLIPEKVKGKIVMCDRG 406
Query: 240 GNARVEXXXXXXXXXXXXMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQY 299
NARV+ MILANT +GEEL+AD+HL+PAT VG AGD IR Y+
Sbjct: 407 INARVQKGDVVKAAGGVGMILANTAANGEELVADAHLLPATTVGEKAGDIIRHYVTTDPN 466
Query: 300 PTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTD 359
PTA+I GTV+ P +P VAAFSSRGPNS+T ILKPD+IAPGVNILAAWTG+ GPT
Sbjct: 467 PTASISILGTVVGVKP-SPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTG 525
Query: 360 LEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENI 419
L D RRV+FNIISGTSMSCPHVSGLAALL+ +P+WSPAAI+SALMTTAY G+ +
Sbjct: 526 LASDSRRVEFNIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPL 585
Query: 420 KDLASGEESTPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDVKRISVFVREPV 479
D+A+G+ STPF HGAGHV P A NPGL+YD+ +Y+ FLC++ Y +I R
Sbjct: 586 LDIATGKPSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSRRNY 645
Query: 480 SSDICTRALATPGNLNYPXXXXXXXXXXXXXKYKRVVKNVGSSVDAVYEVKXXXXXXXXX 539
+ D +++ + +LNYP KY R V +VG + Y VK
Sbjct: 646 TCDP-SKSYSV-ADLNYPSFAVNVDGVGAY-KYTRTVTSVGGA--GTYSVKVTSETTGVK 700
Query: 540 XXW-PSKLAFSAEKKALAYEITFSSVGLDGLGVSPQQS-GSIEWSDGVHLVRSPIAVRW 596
P+ L F + +Y +TF+ +D S S GSIEWSDG H+V SP+A+ W
Sbjct: 701 ISVEPAVLNFKEANEKKSYTVTFT---VDSSKPSGSNSFGSIEWSDGKHVVGSPVAISW 756
|
|
| UNIPROTKB|Q69P78 OJ1344_B01.33 "Putative serine protease" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1512 (537.3 bits), Expect = 4.4e-155, P = 4.4e-155
Identities = 307/604 (50%), Positives = 390/604 (64%)
Query: 4 DFPASACNKKIIGARAFYRGYESYMERPIDETE-ESKSPRDTEGHGTHTASTAAGSLVSN 62
DFP+S CN+K+IGARAF+RGY + E SPRD +GHGTHTASTAAG++V++
Sbjct: 173 DFPSSMCNRKLIGARAFFRGYGAGGGGNGSHVSLEFSSPRDHDGHGTHTASTAAGAVVAD 232
Query: 63 ASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGASGY 122
A L YA G ARGMA AR+A YK+CW GCF SDILA M++AI DGVDV+SLS+G +
Sbjct: 233 AGLLGYAEGTARGMAPGARVAAYKVCWRQGCFSSDILAGMEKAIDDGVDVLSLSLGGGAF 292
Query: 123 APQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPADA 182
P +D IA+G+ A + G+VV+CSAGNSGP P + N APW++TVGA T+DR FPA A
Sbjct: 293 -P-LSRDPIAVGALAATRRGIVVACSAGNSGPSPSSLVNTAPWVITVGAGTLDRNFPAYA 350
Query: 183 ILGDGRIFGGVSLYAGESLPDFKLHLVYG-----GDCGDRFCYMGRLEPSKVQGKIVVCD 237
LG+G G+SLY+G+ L D KL +VY G + C G L+ + V+GK+V+CD
Sbjct: 351 ELGNGETHAGMSLYSGDGLGDEKLPVVYNKGIRAGSNASKLCMEGTLDAAAVKGKVVLCD 410
Query: 238 RGGNARVEXXXXXXXXXXXXMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLS 297
RGGN+RVE M+LANT +SGEE++ADSHL+PA VGA +GD IR Y++
Sbjct: 411 RGGNSRVEKGLVVKQAGGVGMVLANTAQSGEEVVADSHLLPAVAVGAKSGDAIRRYVESD 470
Query: 298 QYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGP 357
+ F GT + P AP VAAFSSRGPN A++LKPDVI PGVNILA WTGS GP
Sbjct: 471 ADAEVGLTFAGTALDVRP-APVVAAFSSRGPNRQVAQLLKPDVIGPGVNILAGWTGSVGP 529
Query: 358 TDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGE 417
T L +D RR FNI+SGTSMSCPH+SGLAA ++ A+PDWSP+AIKSALMTTAY +DN+G
Sbjct: 530 TGLTVDERRSPFNILSGTSMSCPHISGLAAFVKAAHPDWSPSAIKSALMTTAYTVDNTGS 589
Query: 418 NIKDLASGEESTPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDVKRISVFVRE 477
I D AS +TP+ GAGHVDP +AL+PGLVYD V +YVAFLCS+G ++
Sbjct: 590 PIVDAASNTTATPWSIGAGHVDPVKALSPGLVYDTSVDDYVAFLCSVGTSPPQVQAITAA 649
Query: 478 PVSSDICTRALATPGNLNYPXXXX-----XXXXXXXXXKYKRVVKNVGSSVDAVYEVKXX 532
P + C R L++PG+LNYP KY+R + NVG +VY +
Sbjct: 650 P--NVTCQRKLSSPGDLNYPSFSVVFGRRSSSSRSTTVKYRRELTNVGDG-RSVYTARVT 706
Query: 533 XXXXXXXXXWPSKLAFSAEKKALAYEITFSSVGLDGLGVSPQQSGSIEWSDGVHLVRSPI 592
P++LAF L Y +TF S G G + G + WS+G H VRSPI
Sbjct: 707 GPSDIAVAVKPARLAFKKAGDKLRYTVTFKST-TPG-GPTDAAFGWLTWSNGEHDVRSPI 764
Query: 593 AVRW 596
+ W
Sbjct: 765 SYTW 768
|
|
| UNIPROTKB|Q75I27 OSJNBa0091E13.30 "Putaive subtilisin-like proteinase" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1485 (527.8 bits), Expect = 3.2e-152, P = 3.2e-152
Identities = 312/611 (51%), Positives = 400/611 (65%)
Query: 5 FPASACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNAS 64
F +SACN+K++GAR F RGYE+ M P+D T ES+SPRD +GHGTHT+STAAG+ VS AS
Sbjct: 165 FNSSACNRKLVGARFFNRGYEAAMG-PMDTTRESRSPRDDDGHGTHTSSTAAGAAVSGAS 223
Query: 65 LFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGASGYAP 124
L +A G ARGMA +AR+AVYK+CW GCF SDILA MD A+ADG V+SLS+G G A
Sbjct: 224 LLGFASGTARGMAPRARVAVYKVCWLGGCFSSDILAGMDAAVADGCGVLSLSLG--GGAA 281
Query: 125 QYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPADAIL 184
Y +DS+AIG+F A + V+VSCSAGN+GPG T +N+APWI TVGA T+DR+FPA L
Sbjct: 282 DYARDSVAIGAFAAMEQNVLVSCSAGNAGPGTSTLSNVAPWITTVGAGTLDRDFPAYVSL 341
Query: 185 GDGRIFGGVSLYAGESLPDFKLHLVYGGDCGD----RFCYMGRLEPSKVQGKIVVCDRGG 240
G+G+ + GVSLYAG++LP L +VY + + C G L P KV GKIVVCDRG
Sbjct: 342 GNGKNYTGVSLYAGKALPSTPLPIVYAANASNSTAGNLCMPGTLTPEKVAGKIVVCDRGV 401
Query: 241 NARVEXXXXXXXXXXXXMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYP 300
+ARV+ M+L+NT +GEEL+AD+HL+PA VGA G I+ Y+ P
Sbjct: 402 SARVQKGFVVRDAGGAGMVLSNTATNGEELVADAHLLPAAGVGAKEGAAIKAYVASDPSP 461
Query: 301 TATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDL 360
TATIV GT + P +P VAAFSSRGPN LT EILKPD+IAPGVNILAAWTG GPT +
Sbjct: 462 TATIVVAGTQVDVRP-SPVVAAFSSRGPNMLTPEILKPDIIAPGVNILAAWTGKAGPTGI 520
Query: 361 EIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNL-DNSGE-N 418
D RRV FNIISGTSMSCPHVSGLAALLR A+P+WSPAA++SALMTTAY+ +G+ N
Sbjct: 521 AADTRRVAFNIISGTSMSCPHVSGLAALLRSAHPEWSPAAVRSALMTTAYSTYAGAGDAN 580
Query: 419 -IKDLASGEESTPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDVKRISVFVRE 477
+ D A+G +TPF +GAGHVDP A++PGLVYD+ ++YV FLC++ Y I+ R
Sbjct: 581 PLLDAATGAPATPFDYGAGHVDPASAVDPGLVYDLGTADYVDFLCALNYTSTMIAAVARS 640
Query: 478 PVSSDICTRALA-TPGNLNYPX-----------XXXXXXXXXXXXKYKRVVKNVGSSVDA 525
S CT A + NLNYP ++R + NVG++
Sbjct: 641 --KSYGCTEGKAYSVYNLNYPSFAVAYSTASSQAAESSGAAATTVTHRRTLTNVGAA--G 696
Query: 526 VYEVKXXXXXXXXXXXWPSKLAFSAEKKALAYEITFSSVGLDGLGVSPQQSGSIEWSDGV 585
Y+V P++LAF++ + +Y ++F++ G + G + WSDG
Sbjct: 697 TYKVSAAAMPGVAVAVEPTELAFTSAGEKKSYTVSFTAKSQPS-GTAG--FGRLVWSDGK 753
Query: 586 HLVRSPIAVRW 596
H V SP+A W
Sbjct: 754 HSVASPMAFTW 764
|
|
| UNIPROTKB|Q94H95 OSJNBb0048A17.11 "cDNA clone:J033123P12, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1484 (527.5 bits), Expect = 4.1e-152, P = 4.1e-152
Identities = 308/602 (51%), Positives = 394/602 (65%)
Query: 4 DFPASACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNA 63
DF ASACNKK+IGAR F GYE+ + P+D ++ES+SPRD +GHGTHT+STAAGS V A
Sbjct: 174 DFNASACNKKLIGARFFLTGYEA-AKGPVDTSKESRSPRDNDGHGTHTSSTAAGSAVRGA 232
Query: 64 SLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGASGYA 123
L YA G A+GMA AR+A YK+CW GCF SDIL AM+ A+ DGVDV+SLS+G G A
Sbjct: 233 DLLGYAAGTAKGMAPHARVATYKVCWVGGCFSSDILKAMEVAVNDGVDVLSLSLGG-GTA 291
Query: 124 PQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPADAI 183
Y +DSIA+G++ A + G+ VSCSAGN+GPG T +N APWI TVGA T+DR+FPA +
Sbjct: 292 DYY-RDSIAVGAYSAMERGIFVSCSAGNAGPGSATLSNGAPWITTVGAGTLDRDFPAHVV 350
Query: 184 LGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDR----FCYMGRLEPSKVQGKIVVCDRG 239
LG+G+ + GVSLY+G+ LP + +Y G+ + C G L P KV GKIV+CDRG
Sbjct: 351 LGNGKNYSGVSLYSGKQLPTTPVPFIYAGNASNSSMGALCMSGSLIPEKVAGKIVLCDRG 410
Query: 240 GNARVEXXXXXXXXXXXXMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQY 299
NARV+ M+LANT +GEEL+AD+H++P VG AGD +R Y
Sbjct: 411 TNARVQKGFVVKDAGGAGMVLANTAANGEELVADAHVLPGAGVGQKAGDTMRAYALSDPN 470
Query: 300 PTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTD 359
PTA+IVF GT + P +P VAAFSSRGPN++T ILKPD+IAPGVNILAAW+GS GP+
Sbjct: 471 PTASIVFAGTQVGIQP-SPVVAAFSSRGPNTVTPGILKPDLIAPGVNILAAWSGSVGPSG 529
Query: 360 LEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENI 419
L D RRV FNIISGTSMSCPHVSGLAALLR A+ DWSPAAI+SALMTT+YN +G I
Sbjct: 530 LAGDSRRVGFNIISGTSMSCPHVSGLAALLRAAHQDWSPAAIRSALMTTSYNGYPNGNGI 589
Query: 420 KDLASGEESTPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDVKRISVFVREPV 479
D+A+G +TP GAGHVDP++A++PGLVYDI ++YV FLC+I Y +I+ +
Sbjct: 590 LDVATGLPATPLDVGAGHVDPSKAVDPGLVYDIAAADYVDFLCAISYGPMQIAALTKH-- 647
Query: 480 SSDICT--RALATPGNLNYPXXXXXXXXXXXXXKYKRVVKNVGSSVDAVYEVKXXXXXXX 537
++D C+ R A LNYP K+ R V NVG Y+V
Sbjct: 648 TTDACSGNRTYAVTA-LNYPSFSVTFPATGGTEKHTRTVTNVGQP--GTYKVTASAAAGS 704
Query: 538 X---XXXWPSKLAFSAEKKALAYEITFSSVGLDGLGVSPQQSGSIEWSDGVHLVRSPIAV 594
PS L F+ + +Y ++F++ + G + G + WS H+V SPIAV
Sbjct: 705 TPVTVSVEPSTLTFTKSGEKQSYTVSFAAAAMPS-GTNG--FGRLVWSSDHHVVSSPIAV 761
Query: 595 RW 596
W
Sbjct: 762 TW 763
|
|
| UNIPROTKB|Q6K7F4 OJ1293_A01.34 "Putative subtilisin-like proteinase" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1483 (527.1 bits), Expect = 5.2e-152, P = 5.2e-152
Identities = 299/598 (50%), Positives = 393/598 (65%)
Query: 1 TSKDFPASA-CNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSL 59
++ F A+A CN K++GA+ F RGYE+ + PIDET+ESKSP DTEGHGTHTASTAAGS
Sbjct: 202 STPSFNATAYCNNKLVGAKYFCRGYEAALGHPIDETQESKSPLDTEGHGTHTASTAAGSA 261
Query: 60 VSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGA 119
V A+LF YA G A+GMAV+A IA+YK+CW+ GC+DSDILA MD+AIAD V+VISLS+G
Sbjct: 262 VPGANLFGYANGTAQGMAVRAHIAIYKVCWAKGCYDSDILAGMDEAIADRVNVISLSLG- 320
Query: 120 SGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFP 179
G + Q + ++G+F A + G+ VS +AGN GP TA N+APW++TVGAS+I+R FP
Sbjct: 321 -GRSEQLYNEPTSVGAFNAIRRGIFVSAAAGNDGPDMSTANNLAPWMVTVGASSINRRFP 379
Query: 180 ADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRG 239
A+ ILG+G + G SLY+G ++ + LVY GD G R C G+L + V GKIV+C+ G
Sbjct: 380 ANIILGNGETYVGTSLYSGRNIAASLIPLVYSGDAGSRLCEPGKLSRNIVIGKIVLCEIG 439
Query: 240 GNARVEXXXXXXXXXXXXMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQY 299
E I+ + + G+ ++ LIPA+ V + I Y + +
Sbjct: 440 YAPAQEAAVQQAGGVGA--IVPSRNVYGQFFLSSPDLIPASTVTFADANAIYSYTQSAAN 497
Query: 300 PTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTD 359
P A I FRGT+IS SP AP+VAAFSSRGPN AEILKPD+IAPGV+ILAAWTG P+
Sbjct: 498 PVARIEFRGTMISQSPYAPRVAAFSSRGPNRFVAEILKPDIIAPGVDILAAWTGENSPSS 557
Query: 360 LEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENI 419
L ID RRV+FNIISGTSM+CPHVSG+AA+L+ A PDWSP AIKSA+MTTAY +DN G I
Sbjct: 558 LSIDTRRVEFNIISGTSMACPHVSGIAAMLKVARPDWSPTAIKSAMMTTAYEVDNGGNAI 617
Query: 420 KDLASGEESTPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDVKRISVFVREPV 479
+G + PF G+GHVDPN AL+PGLVY+ +Y+AFLC +GY +I++F R+
Sbjct: 618 MSSVNGRAAGPFELGSGHVDPNNALDPGLVYNATTDDYIAFLCGLGYTPNQIAIFTRDST 677
Query: 480 SSDICTRALATPGNLNYPXXXXXXXXXXXXXKYKRVVKNVGSSVDAVYEVKXXXXXXXXX 539
++ C+R G+LNYP +R V NVG++ +AVY+V
Sbjct: 678 TT-YCSRRPPI-GDLNYPAFSMVFARSGGQVTQRRTVTNVGANTNAVYDVTITAPPGTRL 735
Query: 540 XXWPSKLAFSAEKKALAYEITFSSVGLDGLGVSPQQS-GSIEWSDGVHLVRSPIAVRW 596
P +L F+A++K L Y IT S+ G SP + G I WSDG H+VRSP+ W
Sbjct: 736 TVAPMRLTFNAQRKTLDYAITLSA----GSSNSPYNAWGDIVWSDGQHMVRSPVVATW 789
|
|
| UNIPROTKB|Q7XTY8 OSJNBa0019K04.9 "Os04g0573300 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1482 (526.7 bits), Expect = 6.7e-152, P = 6.7e-152
Identities = 306/605 (50%), Positives = 399/605 (65%)
Query: 1 TSKDFPASACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLV 60
T + F + CN+KI+GAR FY GYE+ PI+ET E KSPRD +GHGTHTA+TAAGS V
Sbjct: 180 TGRGFTTANCNRKIVGARIFYNGYEA-SSGPINETTELKSPRDQDGHGTHTAATAAGSPV 238
Query: 61 SNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGAS 120
+A+L+ YA G ARGMA +AR+A YK+CW+ GCF SDILAA+D+A++DGVDV+S+S+G
Sbjct: 239 QDANLYGYAGGVARGMAPRARVAAYKVCWAGGCFSSDILAAVDRAVSDGVDVLSISLG-- 296
Query: 121 GYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPA 180
G A +Y DS++I SFGA Q GV V+CSAGN+GP P + TN++PWI TVGAST+DR+FPA
Sbjct: 297 GGASRYYLDSLSIASFGAMQMGVFVACSAGNAGPDPISLTNLSPWITTVGASTMDRDFPA 356
Query: 181 DAILGDGRIFGGVSLYAG-ESL-PDFKLHLVY-GGDCG--D--RFCYMGRLEPSKVQGKI 233
LG+G GVSLY G +L P + +VY GG+ D C G L+P V GKI
Sbjct: 357 TVTLGNGANITGVSLYKGLRNLSPQEQYPVVYLGGNSSMPDPRSLCLEGTLQPHDVSGKI 416
Query: 234 VVCDRGGNARVEXXXXXXXXXXXXMILANTDESGEELIADSHLIPATMVGAIAGDKIREY 293
V+CDRG + RV+ MILANT +GEEL+ADSHL+PA VG G + Y
Sbjct: 417 VICDRGISPRVQKGQVVKEAGGIGMILANTAANGEELVADSHLLPAVAVGEAEGIAAKSY 476
Query: 294 IKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTG 353
K + PTAT+ F GT + P +P VAAFSSRGPN LT EILKPDV+APGVNILAAW+G
Sbjct: 477 SKSAPKPTATLSFGGTKLGIRP-SPVVAAFSSRGPNILTLEILKPDVVAPGVNILAAWSG 535
Query: 354 STGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLD 413
P+ L D RRV FNI+SGTSMSCPHV+G+AAL++ ++PDWSPA IKSALMTTAY D
Sbjct: 536 DASPSSLSSDSRRVGFNILSGTSMSCPHVAGVAALIKASHPDWSPAQIKSALMTTAYVHD 595
Query: 414 NSGENIKDLASGEESTPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDVKRISV 473
N+ +KD A+G+ STPF HGAGH+ P RAL PGLVYDI ++Y+ FLC+ ++
Sbjct: 596 NTYRPMKDAATGKASTPFEHGAGHIHPVRALTPGLVYDIGQADYLEFLCTQHMTPMQLRT 655
Query: 474 FVREPVSSDICTRALATPGNLNYPXXXXXXXXX-XXXXKYKRVVKNVGSSVDAVYEVKXX 532
F + S+ C ++ +LNYP +R V NVG + Y VK
Sbjct: 656 FTKN--SNMTCRHTFSSASDLNYPAISVVFADQPSKALTVRRTVTNVGPP-SSTYHVKVT 712
Query: 533 XXXXXXXXXWPSKLAFSAEKKALAYEITFSSVGLDGLGVSPQQSGSIEWSDGVHLVRSPI 592
P+ L F + + L+Y++T ++ +P+ G++ WSDGVH+VRSP+
Sbjct: 713 KFKGADVIVEPNTLHFVSTNQKLSYKVTVTTKAAQK---APE-FGALSWSDGVHIVRSPV 768
Query: 593 AVRWI 597
+ W+
Sbjct: 769 VLTWL 773
|
|
| UNIPROTKB|Q8LSS2 OSJNBa0011L09.20 "Subtilisin N-terminal Region family protein, expressed" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1459 (518.7 bits), Expect = 1.8e-149, P = 1.8e-149
Identities = 312/610 (51%), Positives = 389/610 (63%)
Query: 4 DFPASACNKKIIGARAFYRGYESYM------ERPIDETEESKSPRDTEGHGTHTASTAAG 57
DF S C +K++GAR+F RG + R + S RD +GHGTHTA+TAAG
Sbjct: 172 DFSPSVCGRKLVGARSFSRGLRAANGGGGGGARGGVGRKGFVSARDRDGHGTHTATTAAG 231
Query: 58 SLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSV 117
++V+NASL YA G ARGMA AR+A YK+CW GC SDILA +D A+ADGV V+SLS+
Sbjct: 232 AVVANASLLGYATGTARGMAPGARVAAYKVCWPEGCLGSDILAGIDAAVADGVGVLSLSL 291
Query: 118 GASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDRE 177
G G AP Y +D++A+G+FGAA GV V+CSAGNSGP T N APW+ TVGA T+DR+
Sbjct: 292 GG-GSAP-YFRDTVAVGAFGAAAAGVFVACSAGNSGPSGATVANSAPWVATVGAGTLDRD 349
Query: 178 FPADAILGDGRIFGGVSLYAGESLPDFK---LHLVYGG--DCGDRFCYMGRLEPSKVQGK 232
FPA L G GVSLYAG S P + L LVYGG D R C G L+P+ V+GK
Sbjct: 350 FPAYVTLPTGARLAGVSLYAGPS-PSPRPAMLPLVYGGGGDNASRLCLPGTLDPAAVRGK 408
Query: 233 IVVCDRGGNARVEXXXXXXXXXXXXMILANTDESGEELIADSHLIPATMVGAIAGDKIRE 292
IV+CDRG NARVE M+LANT SGEEL+ADSHL+PA VG +AGDKIRE
Sbjct: 409 IVLCDRGVNARVEKGAVVKAAGGAGMVLANTAASGEELVADSHLLPAVAVGKLAGDKIRE 468
Query: 293 YIKL-----SQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNI 347
Y + P A + F GTV+ P +P VAAFSSRGPN++ EILKPD+I PGVNI
Sbjct: 469 YASRRAAGGAGAPMAILSFGGTVLGVRP-SPVVAAFSSRGPNTVVPEILKPDMIGPGVNI 527
Query: 348 LAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMT 407
LA W+G GPT L D RR FNIISGTSMSCPH+SG+AALL+ A+P+WSPAAIKSALMT
Sbjct: 528 LAGWSGVAGPTGLVKDGRRTHFNIISGTSMSCPHISGVAALLKAAHPEWSPAAIKSALMT 587
Query: 408 TAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYD 467
TAY +DN+ +++D A G +TPF GAGHVDP +AL+PGL+YDI +YV+FLCS+ Y
Sbjct: 588 TAYTVDNTNSSLRDAAGGLLATPFAFGAGHVDPQKALSPGLLYDISTKDYVSFLCSLNYT 647
Query: 468 VKRISVFVREPVSSDICTRALATPGNLNYPXXXXXXXXXXXXX-KYKRVVKNVGSSVDAV 526
I V + +S+ C R PG+LNYP +++R V NVG ++ +V
Sbjct: 648 TPHIQVITK--MSNITCPRKFR-PGDLNYPSFSVVFKKKSKHVMRFRREVTNVGPAM-SV 703
Query: 527 YEVKXXXXXXXXXXXWPSKLAFSAEKKALAYEITFSSVGLDGLGVSPQQSGSIEWSDGVH 586
Y VK P+KL F+ + Y + F+S +D P G I W H
Sbjct: 704 YNVKVSGPASVSVKVTPAKLVFNKVGQKQRYYVIFAST-VDASNAKPD-FGWISWMSSQH 761
Query: 587 LVRSPIAVRW 596
+VRSPIA W
Sbjct: 762 VVRSPIAYTW 771
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00034064001 | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (771 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 604 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 1e-79 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 3e-36 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 3e-32 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 2e-27 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 3e-23 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 2e-20 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 9e-19 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 3e-18 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 2e-16 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 8e-16 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 7e-15 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 9e-15 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 6e-14 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 3e-13 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 3e-13 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 3e-13 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 6e-13 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 9e-13 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 2e-12 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 2e-12 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 7e-12 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 2e-11 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 3e-11 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 2e-10 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 2e-10 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 2e-10 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 8e-10 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 4e-09 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 5e-09 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 5e-09 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 1e-08 | |
| pfam02225 | 96 | pfam02225, PA, PA domain | 2e-08 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 2e-08 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 4e-08 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 1e-07 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 2e-07 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 3e-07 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 3e-07 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 3e-07 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 6e-07 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 7e-07 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 5e-06 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 6e-06 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 6e-06 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 8e-06 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 1e-05 | |
| cd07492 | 222 | cd07492, Peptidases_S8_8, Peptidase S8 family doma | 1e-05 | |
| cd00538 | 126 | cd00538, PA, PA: Protease-associated (PA) domain | 1e-05 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 2e-05 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 3e-05 | |
| cd04056 | 361 | cd04056, Peptidases_S53, Peptidase domain in the S | 5e-05 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 6e-05 | |
| cd04847 | 291 | cd04847, Peptidases_S8_Subtilisin_like_2, Peptidas | 7e-05 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 3e-04 | |
| cd07479 | 255 | cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 fa | 3e-04 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 4e-04 | |
| PTZ00262 | 639 | PTZ00262, PTZ00262, subtilisin-like protease; Prov | 4e-04 | |
| cd02133 | 143 | cd02133, PA_C5a_like, PA_C5a_like: Protease-associ | 5e-04 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 7e-04 | |
| TIGR03895 | 602 | TIGR03895, protease_PatA, cyanobactin maturation p | 0.001 | |
| cd07494 | 298 | cd07494, Peptidases_S8_10, Peptidase S8 family dom | 0.001 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 253 bits (648), Expect = 1e-79
Identities = 98/175 (56%), Positives = 123/175 (70%), Gaps = 5/175 (2%)
Query: 1 TSKDFPASACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLV 60
T +DF +CN K+IGAR F GY++Y + E +SPRD +GHGTHTASTAAG++V
Sbjct: 66 TGEDFNPFSCNNKLIGARYFSDGYDAYG--GFNSDGEYRSPRDYDGHGTHTASTAAGNVV 123
Query: 61 SNASLFDYARGEARGMAVKARIAVYKICWSP-GCFDSDILAAMDQAIADGVDVISLSVGA 119
NAS+ +A G A G+A +ARIAVYK+CW GCF SDILAA+DQAIADGVDVIS S+G
Sbjct: 124 VNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVDVISYSIGG 183
Query: 120 SGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTI 174
+P +D IAI A + G+ V+ SAGNSGPG T N+APW+ TV AST+
Sbjct: 184 G--SPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAASTL 236
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 3e-36
Identities = 56/103 (54%), Positives = 66/103 (64%), Gaps = 14/103 (13%)
Query: 308 GTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRV 367
TV + +P VAA + LKPD+ APGV+ILAAWT D R
Sbjct: 219 STVPNVAPWVTTVAAST-----------LKPDIAAPGVDILAAWTPEGADP---GDARGE 264
Query: 368 DFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAY 410
DF ISGTSM+ PHV+G+AALL+ A+PDWSPAAIKSALMTTAY
Sbjct: 265 DFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 3e-32
Identities = 61/125 (48%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Query: 183 ILGDGRIFGGVSLYAGESLPDFKL--HLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGG 240
LG+G+ G SLY G +L + L GD C G L+PSKV+GKIV+CDRGG
Sbjct: 3 TLGNGKTIVGQSLYPG-NLKTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGG 61
Query: 241 N-ARVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQY 299
N +RV KG AVK AGG GMILAN G +++AD+H++PA V G I YI +
Sbjct: 62 NTSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSN 121
Query: 300 PTATI 304
PTATI
Sbjct: 122 PTATI 126
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-27
Identities = 55/136 (40%), Positives = 74/136 (54%), Gaps = 20/136 (14%)
Query: 308 GTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRV 367
+ ++ A V SSRGP + + I KPD++APGV+I++ GS
Sbjct: 180 ASTVADVAEADTVGPSSSRGPPTSDSAI-KPDIVAPGVDIMSTAPGSGT----------- 227
Query: 368 DFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEE 427
+ +SGTSM+ PHV+G AALL++A+PDWSPA IK+ALM TA L +S G
Sbjct: 228 GYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSD--------GVV 279
Query: 428 STPFIHGAGHVDPNRA 443
GAG VD RA
Sbjct: 280 YPVSRQGAGRVDALRA 295
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 3e-23
Identities = 67/175 (38%), Positives = 90/175 (51%), Gaps = 15/175 (8%)
Query: 11 NKKIIGARAFY-RGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYA 69
N K+ G F Y+ RP S D GHGTH A AG+ V+
Sbjct: 27 NDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDATGHGTHVAGIIAGNGVNV------- 79
Query: 70 RGEARGMAVKARIAVYKIC-WSPGCFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQ 128
G +G+A KA + YK+ I+AA++QA+ DG+DVI+LS+G S D
Sbjct: 80 -GTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLG-SSVNGPDDP 137
Query: 129 DSIAIGSFGAAQHGVVVSCSAGNSGPGPFT--ATNIAPWILTVGASTIDREFPAD 181
D+IAI + A + GVVV +AGNSGP P+T + AP +TVGAST+ AD
Sbjct: 138 DAIAINN--AVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADVAEAD 190
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 2e-20
Identities = 38/98 (38%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 314 SPPAPKVAAFSSRGPNSLTAE-ILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNII 372
P ++ FSSRGP T + +KPDV+APG NI++ + P
Sbjct: 174 GPHDDGISYFSSRGP---TGDGRIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFEM---- 226
Query: 373 SGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAY 410
SGTSM+ PHVSG ALL +A P +P +K L TA
Sbjct: 227 SGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 9e-19
Identities = 56/174 (32%), Positives = 85/174 (48%), Gaps = 26/174 (14%)
Query: 32 IDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSP 91
++ +P D GHGTH A AGS + + G+ +G+A A + K+
Sbjct: 31 VNTVNGRTTPYDDNGHGTHVAGIIAGSGRA-------SNGKYKGVAPGANLVGVKVLDDS 83
Query: 92 G-CFDSDILAAMDQAIAD----GVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVS 146
G +SDI+A +D + + + V++LS+GA P Y +D + G+VV
Sbjct: 84 GSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAP-PDPSYGEDPLCQAVERLWDAGIVVV 142
Query: 147 CSAGNSGPGPFTATN--IAPWILTVGASTIDREFPADAIL---------GDGRI 189
+AGNSGPGP T T+ +P ++TVGA +D P D + GDGRI
Sbjct: 143 VAAGNSGPGPGTITSPGNSPKVITVGA--VDDNGPHDDGISYFSSRGPTGDGRI 194
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 3e-18
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 25/127 (19%)
Query: 319 KVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMS 378
+A FS+ G KPD++APG NIL++ G ++ SGTSM+
Sbjct: 176 TIADFSNYGGPVDGI---KPDIVAPGGNILSSGPGGDLG----------GYDSHSGTSMA 222
Query: 379 CPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHV 438
P V+G AALL A P +P +++ L+TTA +L + G + G G +
Sbjct: 223 APLVAGAAALLLSANPSLTPETLRALLVTTATDLGSMGLD------------RSFGYGLL 270
Query: 439 DPNRALN 445
+ +A+
Sbjct: 271 NLGKAVK 277
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 2e-16
Identities = 52/156 (33%), Positives = 66/156 (42%), Gaps = 16/156 (10%)
Query: 31 PIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWS 90
D P D GHGTH A A S G G+A A++ K+
Sbjct: 30 DDDNENGPTDPDDGNGHGTHVAGIIAAS---------ANNGGGVGVAPGAKLIPVKVLDG 80
Query: 91 PG-CFDSDILAAMDQAIAD-GVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCS 148
G SDI AA+D A AD G DVI+LS+G G P AI A+ GV+V +
Sbjct: 81 DGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSPPSSALSE-AIDYA-LAKLGVLVVAA 138
Query: 149 AGNSGPGPFTATNI---APWILTVGASTIDREFPAD 181
AGN GP T +P ++ VGA D +
Sbjct: 139 AGNDGPDGGTNIGYPAASPNVIAVGAVDRDGTPASP 174
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 8e-16
Identities = 45/122 (36%), Positives = 63/122 (51%), Gaps = 18/122 (14%)
Query: 297 SQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAE-ILKPDVIAPGVNILAAWTGST 355
S P+ + G S + VA+FSSRGP T + +KPD++APG IL+A +G
Sbjct: 180 SNNPSVSNGEGGLGQSDNSD--TVASFSSRGP---TYDGRIKPDLVAPGTGILSARSGGG 234
Query: 356 GPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKA-----YPDW---SPAAIKSALMT 407
G D + SGTSM+ P V+G AALLR+ YP S A +K+ L+
Sbjct: 235 GIGDTSDS----AYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLIN 290
Query: 408 TA 409
+A
Sbjct: 291 SA 292
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 7e-15
Identities = 44/103 (42%), Positives = 56/103 (54%), Gaps = 18/103 (17%)
Query: 317 APKVAAFSSRG---------PNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRV 367
+ A FSS G P+S E KPDV APGV++ +A G+ G
Sbjct: 161 DDEDAWFSSFGSSGASLVSAPDSPPDEYTKPDVAAPGVDVYSARQGANGDGQ-------- 212
Query: 368 DFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAY 410
+ +SGTSM+ PHV+G+AALL A+PD SP IK AL TAY
Sbjct: 213 -YTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 9e-15
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 21/90 (23%)
Query: 319 KVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMS 378
A+FSS GP ++ APGV+IL ST P + D+ +SGTSM+
Sbjct: 161 NRASFSSTGPE--------VELAAPGVDIL-----STYPNN--------DYAYLSGTSMA 199
Query: 379 CPHVSGLAALLRKAYPDWSPAAIKSALMTT 408
PHV+G+AAL+ P+ + A ++ AL T
Sbjct: 200 TPHVAGVAALVWSKRPELTNAQVRQALNKT 229
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 6e-14
Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 11/71 (15%)
Query: 339 DVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSP 398
D+ APGV+IL+AW GS +SGTSM+ PHV+GLAA L PD SP
Sbjct: 194 DIFAPGVDILSAWIGSDT-----------ATATLSGTSMAAPHVAGLAAYLLSLGPDLSP 242
Query: 399 AAIKSALMTTA 409
A +K+ L+ A
Sbjct: 243 AEVKARLLNLA 253
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 3e-13
Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 31/144 (21%)
Query: 311 ISPSPPAPKVAAFSSRGPNSLTAEI-LKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDF 369
P+P +++ FSS GP T ++ LKPD+ APG NI + +T +
Sbjct: 225 KVPNPNGGQMSGFSSWGP---TPDLDLKPDITAPGGNIYSTVNDNT-------------Y 268
Query: 370 NIISGTSMSCPHVSGLAALLRKA----YPDWSPA----AIKSALMTTAYNLDNSGENIKD 421
+SGTSM+ PHV+G +AL+++ YP S +K+ LM TA +S +
Sbjct: 269 GYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSEDT--- 325
Query: 422 LASGEESTPFIHGAGHVDPNRALN 445
+P GAG +D +A+
Sbjct: 326 ---KTYYSPRRQGAGLIDVAKAIA 346
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 3e-13
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 20/94 (21%)
Query: 316 PAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGT 375
+A+FS+ G ++ D+ APGV+IL ST P + +SGT
Sbjct: 185 SNDALASFSNYGKKTV-------DLAAPGVDIL-----STSPGG--------GYGYMSGT 224
Query: 376 SMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTA 409
SM+ PHV+G AALL P+ + A IK A++++A
Sbjct: 225 SMATPHVAGAAALLLSLNPNLTAAQIKDAILSSA 258
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 3e-13
Identities = 33/96 (34%), Positives = 42/96 (43%), Gaps = 21/96 (21%)
Query: 320 VAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSC 379
+A FS RGP +KPD+ APGVNIL A G + SGTS++
Sbjct: 359 IAIFSGRGPT--RDGRIKPDIAAPGVNILTASPGGG-------------YTTRSGTSVAA 403
Query: 380 PHVSGLAALL------RKAYPDWSPAAIKSALMTTA 409
V+G ALL R P IK+ L+ A
Sbjct: 404 AIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGA 439
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 6e-13
Identities = 48/135 (35%), Positives = 66/135 (48%), Gaps = 23/135 (17%)
Query: 323 FSSRGPNSLTAE-ILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPH 381
FSS GP T E LKPDV APG NIL+ + + G + ++SGTSM+ P+
Sbjct: 191 FSSWGP---TNELYLKPDVAAPGGNILSTYPLAGG-----------GYAVLSGTSMATPY 236
Query: 382 VSGLAALLRKAY-PDWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDP 440
V+G AALL +A SPA ++ L +TA L S A + + GAG V+
Sbjct: 237 VAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDG---TSALPDLAPVAQQGAGLVNA 293
Query: 441 NRALNPGLVYDIDVS 455
+AL +S
Sbjct: 294 YKALY----ATTTLS 304
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 9e-13
Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 16/171 (9%)
Query: 33 DETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG 92
+ + D GHGTH + T G A+G G+A +A + K+ G
Sbjct: 31 NRRISATEVFDAGGHGTHVSGTIGG---------GGAKGVYIGVAPEADLLHGKVLDDGG 81
Query: 93 CFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNS 152
S I+A M+ A+ DV+S+S+G + Y+ ++++ S Q G + SAGN
Sbjct: 82 GSLSQIIAGMEWAVEKDADVVSMSLGGTYYSEDPLEEAVEALS---NQTGALFVVSAGNE 138
Query: 153 GPGPFTATNIAPWILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPD 203
G G + A L+VGA +DR+ + G SL + P
Sbjct: 139 GHGTSGSPGSAYAALSVGA--VDRD--DEDAWFSSFGSSGASLVSAPDSPP 185
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-12
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 13/126 (10%)
Query: 33 DETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKI---CW 89
D ++ D HG H A AG N D G +G+A +A++ K+
Sbjct: 70 DNNDDILDEDDGSSHGMHVAGIVAG----NGDEEDNGEG-IKGVAPEAQLLAMKVFSNPE 124
Query: 90 SPGCFDSDILAAMDQAIADGVDVISLSVG--ASGYAPQYDQDSIAIGSFGAAQHGVVVSC 147
+D A++ A+ G DVI++S+G A D + AI A + GVVV
Sbjct: 125 GGSTYDDAYAKAIEDAVKLGADVINMSLGSTAGFVDLD-DPEQQAIKR--AREAGVVVVV 181
Query: 148 SAGNSG 153
+AGN G
Sbjct: 182 AAGNDG 187
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 2e-12
Identities = 34/76 (44%), Positives = 43/76 (56%), Gaps = 15/76 (19%)
Query: 319 KVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMS 378
+A FSSRGP+ T +KPD+ APGVNI +A G + SGTSM+
Sbjct: 186 VLADFSSRGPS--TYGRIKPDISAPGVNIRSAVPGG-------------GYGSSSGTSMA 230
Query: 379 CPHVSGLAALLRKAYP 394
PHV+G+AALL A P
Sbjct: 231 APHVAGVAALLWSANP 246
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 7e-12
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 11/72 (15%)
Query: 337 KPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDW 396
D+ APG +IL++ T G + +SGTSM+ P V+G+AALL A PD
Sbjct: 181 GVDIAAPGGDILSSPTTGGGG-----------YATLSGTSMAAPIVAGVAALLLSANPDL 229
Query: 397 SPAAIKSALMTT 408
+PA +K+AL++T
Sbjct: 230 TPAQVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 2e-11
Identities = 38/155 (24%), Positives = 60/155 (38%), Gaps = 15/155 (9%)
Query: 33 DETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG 92
D + D GHGTH A A + + G+A A++ K+ G
Sbjct: 33 DNDPDPTPDDDNNGHGTHVAGIIAAGDNNGSG--------GVGVAPNAKLESVKVLPGSG 84
Query: 93 CFDSDILAAMDQAI--ADGVDVISLSVGASGYAPQYDQDSIAIGSF-GAAQHGVVVSCSA 149
DS++ A++ A + + VI++S+G P +I + GA G + +A
Sbjct: 85 GTDSELAGAIEWAAERPNDIRVINMSLGPVDGPPSSWSSAIDELAVNGADNKGSLFVVAA 144
Query: 150 GNSGPGPFTATNIAP---W-ILTVGASTIDREFPA 180
GN G P I+TVGA T +
Sbjct: 145 GNGGDYADNNPVSDPASANNIITVGAVTENGTIAD 179
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 3e-11
Identities = 45/145 (31%), Positives = 60/145 (41%), Gaps = 30/145 (20%)
Query: 305 VFRGTVISPSPPAPKVAAFSSRGPNSLTAE----ILKPDVIAP-GVNILAAWTGSTGPTD 359
V G + SS P + KPDV AP GVN G P
Sbjct: 154 VDYGNTPAFGSDPAPGGTPSSFDPVGIRLPTPEVRQKPDVTAPDGVNGTVDGDGDGPP-- 211
Query: 360 LEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENI 419
+F GTS + PH +G+AAL+ A P +PA I+ AL +TA ++ G
Sbjct: 212 --------NF---FGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEPG--- 257
Query: 420 KDLASGEESTPFIHGAGHVDPNRAL 444
D AS G+G VD +RA+
Sbjct: 258 YDNAS---------GSGLVDADRAV 273
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 2e-10
Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 17/138 (12%)
Query: 37 ESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFD- 95
++ +D GHGTH A A + G+A +A + K+ G
Sbjct: 32 DNNDYQDGNGHGTHVAGIIAALDNGVGVV---------GVAPEADLYAVKVLNDDGSGTY 82
Query: 96 SDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPG 155
SDI+A ++ AI +G+D+I++S+G +P +++I A G++V +AGNSG G
Sbjct: 83 SDIIAGIEWAIENGMDIINMSLGGPSDSP-ALREAIKK----AYAAGILVVAAAGNSGNG 137
Query: 156 PFTATNIA--PWILTVGA 171
+ A P ++ VGA
Sbjct: 138 DSSYDYPAKYPSVIAVGA 155
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 45/122 (36%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 41 PRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSD-IL 99
P D +GHGTH A A + NA F G+A +A + Y++ G D I+
Sbjct: 64 PMDCQGHGTHVAGIIAAN--PNAYGF-------TGVAPEATLGAYRVFGCSGSTTEDTII 114
Query: 100 AAMDQAIADGVDVISLSVG-ASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGP-GPF 157
AA +A DG DVI+ S+G SG++ D ++ A GVVV+ +AGN G GPF
Sbjct: 115 AAFLRAYEDGADVITASLGGPSGWSE--DPWAVVASRIVDA--GVVVTIAAGNDGERGPF 170
Query: 158 TA 159
A
Sbjct: 171 YA 172
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 42/142 (29%), Positives = 59/142 (41%), Gaps = 29/142 (20%)
Query: 307 RGTVISPSPPAPKVAAFSSRGPNSLTAEILKP----DVIAPGVNILAAWTGSTGPTDLEI 362
+ TV+ P+ P V A S + + P D+ APG NI++ G G
Sbjct: 166 KTTVVYPAW-YPGVLAVGSIDRDGTPSSFSLPGPWVDLAAPGENIVSLSPGGDGLA---- 220
Query: 363 DPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDL 422
SGTS + P VSG AAL+R +PD + A ++ + TA D+ +D
Sbjct: 221 --------TTSGTSFAAPFVSGTAALVRSRFPDLTAAQVRRRIEATA---DHPARGGRD- 268
Query: 423 ASGEESTPFIHGAGHVDPNRAL 444
G G VDP AL
Sbjct: 269 --------DYVGYGVVDPVAAL 282
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 8e-10
Identities = 37/129 (28%), Positives = 53/129 (41%), Gaps = 19/129 (14%)
Query: 32 IDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKIC-WS 90
ET + D GHGT A A A G +G+A I Y++
Sbjct: 40 AGETGDINDIVDKLGHGTAVAGQIA------------ANGNIKGVAPGIGIVSYRVFGSC 87
Query: 91 PGCFDSDILAAMDQAIADGVDVISLSVGASGYAP-QYDQDSIAIGSFG-----AAQHGVV 144
S I+ A+ A DGVDVI+LS+G +Y+ D + ++ A G +
Sbjct: 88 GSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSI 147
Query: 145 VSCSAGNSG 153
V +AGN G
Sbjct: 148 VVAAAGNDG 156
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 4e-09
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 14/71 (19%)
Query: 339 DVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSP 398
DV APG IL+ D+ +SGTSM+ PHV+G+AALL P S
Sbjct: 200 DVSAPGGGILSTTPDG-------------DYAYMSGTSMATPHVAGVAALLYSQGP-LSA 245
Query: 399 AAIKSALMTTA 409
+ ++ AL TA
Sbjct: 246 SEVRDALKKTA 256
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 5e-09
Identities = 42/149 (28%), Positives = 61/149 (40%), Gaps = 27/149 (18%)
Query: 38 SKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVY-----KICWSPG 92
S + D +GHGTH A AG ++S+ Y +G+A KA++ S
Sbjct: 47 SDTKDDVDGHGTHVAGIIAGKGNDSSSISLY-----KGVAPKAKLYFQDIGDTSGNLSSP 101
Query: 93 CFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSC-SAGN 151
+ + + M A G + S S G+ Y + A F A + ++ SAGN
Sbjct: 102 PDLNKLFSPMYDA---GARISSNSWGSPVN-NGYTLLARAYDQF-AYNNPDILFVFSAGN 156
Query: 152 SGP-------GPFTATNIAPWILTVGAST 173
G P TA N +LTVGAS
Sbjct: 157 DGNDGSNTIGSPATAKN----VLTVGASN 181
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 5e-09
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 15/91 (16%)
Query: 319 KVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMS 378
A+FSS GP + LKPDV+A G I +GTS S
Sbjct: 185 NKASFSSIGPTADGR--LKPDVMALGTGIYVINGDGN-------------ITYANGTSFS 229
Query: 379 CPHVSGLAALLRKAYPDWSPAAIKSALMTTA 409
CP ++GL A L +A+P+W+ IK A++ +A
Sbjct: 230 CPLIAGLIACLWQAHPNWTNLQIKEAILKSA 260
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-08
Identities = 41/138 (29%), Positives = 59/138 (42%), Gaps = 14/138 (10%)
Query: 41 PRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFD-SDIL 99
D GHGTH A A + + G A G+A KA+I K+ + G +DI
Sbjct: 64 AMDDNGHGTHVAGIIAAAT-------NNGTGVA-GVAPKAKIMPVKVLDANGSGSLADIA 115
Query: 100 AAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTA 159
+ A G VI+LS+G + Q++I A GVVV +AGN G +
Sbjct: 116 NGIRYAADKGAKVINLSLGGGLGS-TALQEAINY----AWNKGVVVVAAAGNEGVSSVSY 170
Query: 160 TNIAPWILTVGASTIDRE 177
P + V A+ D +
Sbjct: 171 PAAYPGAIAVAATDQDDK 188
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|216938 pfam02225, PA, PA domain | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 2e-08
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 205 KLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTD 264
L V GD C L S V+GKIV+ RGG + VEK + AG G+I+ N D
Sbjct: 9 PLVYVGNGDDAGGCCP-EDLADSDVKGKIVLVRRGGCSFVEKAENAQRAGAAGVIIYNND 67
Query: 265 ESGEEL---IADSHLIPATMVGAIAGDKI 290
G IP + G+ +
Sbjct: 68 TGGLGGTVGDPSDVTIPVVFISYEDGEAL 96
|
The PA (Protease associated) domain is found as an insert domain in diverse proteases. The PA domain is also found in a plant vacuolar sorting receptor and members of the RZF family. It has been suggested that this domain forms a lid-like structure that covers the active site in active proteases, and is involved in protein recognition in vacuolar sorting receptors. Length = 96 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 32/113 (28%)
Query: 310 VISPSPPAP-----------KVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPT 358
V +P+ + FS+ S + D+ APGV+I++A G
Sbjct: 178 VGNPAACPSAMGVAAVGALGRTGNFSAVANFSNG----EVDIAAPGVDIVSAAPGGG--- 230
Query: 359 DLEIDPRRVDFNIISGTSMSCPHVSGLAAL----LRKAYPDWSPAAIKSALMT 407
+ +SGTSM+ PHV+G+AAL L KA A +++ L
Sbjct: 231 ----------YRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTA 273
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 4e-08
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 20/90 (22%)
Query: 320 VAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSC 379
VA FS+ G ++ DV APG I ST P + ++ SGTSM+
Sbjct: 221 VANFSNYGKKNV-------DVFAPGERIY-----STTPDN--------EYETDSGTSMAA 260
Query: 380 PHVSGLAALLRKAYPDWSPAAIKSALMTTA 409
P VSG+AAL+ YP+ + +K ++ +
Sbjct: 261 PVVSGVAALIWSYYPNLTAKEVKQIILESG 290
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 32/126 (25%), Positives = 43/126 (34%), Gaps = 21/126 (16%)
Query: 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGC--FDSD 97
S D + HGTH A A + G+A A + + S G D+D
Sbjct: 41 SNGDGDSHGTHVAGVIAAARDGGG---------MHGVAPDATLYSARASASAGSTFSDAD 91
Query: 98 ILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIG----------SFGAAQHGVVVSC 147
I AA D A GV +I+ S G + AA G +
Sbjct: 92 IAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVF 151
Query: 148 SAGNSG 153
+AGN G
Sbjct: 152 AAGNDG 157
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 51/149 (34%), Positives = 66/149 (44%), Gaps = 19/149 (12%)
Query: 43 DTEGHGTHTASTAAGSLVSNASLFDY-ARGEARGMAVKARIA----------VYKICWSP 91
D HGT AS AAG +L+ Y + RG+A A+IA +Y W+
Sbjct: 54 DFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTA 113
Query: 92 GCFDSDILAAMDQAIADGVDVISLSVGAS-----GYAPQYDQDSIAIGSFGAAQHGVVVS 146
G D + VDVIS S G S GYAP D S+ I + GV +
Sbjct: 114 GFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYAPGLDISSLVIDAL-VTYTGVPIV 172
Query: 147 CSAGNSGPGPFTATN--IAPWILTVGAST 173
+AGN GPG T T A ++VGA+T
Sbjct: 173 SAAGNGGPGYGTITAPGAASLAISVGAAT 201
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 3e-07
Identities = 46/150 (30%), Positives = 61/150 (40%), Gaps = 41/150 (27%)
Query: 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARI-AVYKICWSPGCFD--- 95
D GHGTH A T G Y G+A KA + AV K+ C
Sbjct: 58 PDSDCNGHGTHVAGTVGGK--------TY------GVAKKANLVAV-KVL---DCNGSGT 99
Query: 96 -SDILAAMDQAIADGVD-----VISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSA 149
S I+A ++ D V ++S+G G + D A+ + A GVVV +A
Sbjct: 100 LSGIIAGLEWVANDATKRGKPAVANMSLG-GGASTALDA---AVAA--AVNAGVVVVVAA 153
Query: 150 GNSGPGPFTATNI----APWILTVGASTID 175
GNS A N AP +TVGA+ D
Sbjct: 154 GNSN---QDACNYSPASAPEAITVGATDSD 180
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 3e-07
Identities = 37/141 (26%), Positives = 56/141 (39%), Gaps = 19/141 (13%)
Query: 41 PRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGC-FDSDIL 99
P D GHGTH A + G A G+A +I K + G SD +
Sbjct: 59 PMDDNGHGTHVAGIIGAV-------GNNGIGIA-GVAWNVKIMPLKFLGADGSGTTSDAI 110
Query: 100 AAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGP----- 154
A+D A+ G +I+ S G G + AI A G++ +AGN G
Sbjct: 111 KAIDYAVDMGAKIINNSWGGGGPSQALRD---AIAR--AIDAGILFVAAAGNDGTNNDKT 165
Query: 155 GPFTATNIAPWILTVGASTID 175
+ A+ I++V A+ +
Sbjct: 166 PTYPASYDLDNIISVAATDSN 186
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 43/153 (28%), Positives = 60/153 (39%), Gaps = 30/153 (19%)
Query: 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKAR-IAVYKICWSPGCFDSDI 98
P D GHGTHT T G+ G+ G+A AR IA + G D+D
Sbjct: 47 LPYDDNGHGTHTMGTMVGNDGD---------GQQIGVAPGARWIAC-RALDRNGGNDADY 96
Query: 99 LAAMDQAIA----DGV--------DVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVS 146
L +A G DVI+ S G ++ Q ++A ++ AA G+
Sbjct: 97 LRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSGDNEWLQPAVA--AWRAA--GIFPV 152
Query: 147 CSAGNSGPGPFTATN---IAPWILTVGASTIDR 176
+AGN GP T P VGA+ +
Sbjct: 153 FAAGNDGPRCSTLNAPPANYPESFAVGATDRND 185
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 51.9 bits (123), Expect = 6e-07
Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 17/161 (10%)
Query: 314 SPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIIS 373
+ VA+FS+ G + D+ APGVNIL+ +T + D+ +S
Sbjct: 312 LDLSDTVASFSNDGSPT------GVDIAAPGVNILSLSAVNT------LPGDGADYVTLS 359
Query: 374 GTSMSCPHVSGLAALLRKAYP-DWSPAAIKSALMTTAYNLDNSGENI----KDLASGEES 428
GTSM+ PHVSG+AAL+ A P + +PA +++ ++TTA SG + +
Sbjct: 360 GTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLTPLSGVDNLVGGGLANLDAAA 419
Query: 429 TPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDVK 469
T G + + + ++ L
Sbjct: 420 TDVAGGTLPANGTGSSQGAVEAPGTLALLTPALGGTVPAAV 460
|
Length = 508 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 7e-07
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
Query: 342 APGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAI 401
APG NI + + +SGTS + PHVSG AALL + +P + +
Sbjct: 210 APGENIYSTDPDGGN-----------GYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQV 258
Query: 402 KSALMTTA 409
+ L+TTA
Sbjct: 259 RQTLLTTA 266
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 5e-06
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 16/77 (20%)
Query: 320 VAAFSSRGPNSLTAEILKPDVIAPGVN-ILAAWTGSTGPTDLEIDPRRVDFNIISGTSMS 378
A+FS+ G D+ APGV IL+ G ++ +SGTSM+
Sbjct: 198 KASFSNYGRWV--------DIAAPGVGTILSTVPKLDGDGG-------GNYEYLSGTSMA 242
Query: 379 CPHVSGLAALLRKAYPD 395
PHVSG+AAL+ +PD
Sbjct: 243 APHVSGVAALVLSKFPD 259
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 6e-06
Identities = 31/83 (37%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Query: 38 SKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGC-FDS 96
+ +D GHGTH A T G V G G+A A IA+ G D
Sbjct: 39 GEDVQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDG 89
Query: 97 DILAAMDQAIADGVDVISLSVGA 119
ILA + A+A+G DVIS+S+GA
Sbjct: 90 GILAGIQWAVANGADVISMSLGA 112
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 6e-06
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEID--PRRVDFNIISGTSMS 378
A++S+ GP DV APG + + G P P + + GTSM+
Sbjct: 204 ASYSNYGP--------AVDVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMA 255
Query: 379 CPHVSGLAALLRKAYPDWSPAAIKSALMTT 408
PHV+G+AAL++ P +PA I+S L +T
Sbjct: 256 APHVAGVAALMKSVNPSLTPAQIESLLQST 285
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 8e-06
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
A++S+ G D++APGV I WT TG P + SGTS + P
Sbjct: 167 ASYSNYGNYV--------DLVAPGVGI---WTTGTGRGSAGDYPGG-GYGSFSGTSFASP 214
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTT 408
+G+AAL+ A P+ +PA ++ L +T
Sbjct: 215 VAAGVAALILSANPNLTPAEVEDILTST 242
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 320 VAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSC 379
V ++SSRGP+ A KPD+ A G AW F++ GTSM+
Sbjct: 221 VVSWSSRGPSI--AGDPKPDLAAIGA---FAWAPGRVLDSGGALDGNEAFDLFGGTSMAT 275
Query: 380 PHVSGLAALLRKAYPD------WSPAAIKSALMTTA 409
P +G AAL+ A + + P +++ LM+TA
Sbjct: 276 PMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173817 cd07492, Peptidases_S8_8, Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 13/68 (19%)
Query: 342 APGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAI 401
A GV+I+A R SG S + PHV+G+ ALL PD +
Sbjct: 167 ADGVDIIAPAPHG-----------RYLTV--SGNSFAAPHVTGMVALLLSEKPDIDANDL 213
Query: 402 KSALMTTA 409
K L A
Sbjct: 214 KRLLQRLA 221
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 222 |
| >gnl|CDD|238300 cd00538, PA, PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-05
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 229 VQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADSHL------IPATMV 282
V+GKIV+ RGG + EK + AG +I+ N + + L IP +
Sbjct: 45 VKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGI 104
Query: 283 GAIAGDKIREYIKLSQ 298
G+ + ++ +
Sbjct: 105 SYADGEALLSLLEAGK 120
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) glutamate carboxypeptidase II (GCPII), vi) yeast aminopeptidase Y, vii) Vibrio metschnikovii VapT, a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease, viii) lactocepin (a cell envelope-associated protease from Lactobacillus paracasei subsp. paracasei NCDO 151), ix) various subtilisin-like proteases such as melon Cucumisin, and x) human TfR (transferrin receptor) 1 and 2. Length = 126 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 36/159 (22%)
Query: 20 FYRGYESYMERPIDETEESKSP------RDTEGHGTHTASTAAGSLVSNASLFDYARGEA 73
Y G Y E I+ S +P RD GHGTH A AAG+ +
Sbjct: 47 GYYGGGEYTEEIINAALASDNPYDIVPSRDENGHGTHVAGIAAGN--------GDNNPDF 98
Query: 74 RGMAVKARIAVYK----------ICWSPGCFD-SDILAAMDQAI--ADGVD---VISLSV 117
+G+A +A + V K + +DI+ A+ A ++ VI++S+
Sbjct: 99 KGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPLVINISL 158
Query: 118 GASGYAPQYDQDSI---AIGSFGAAQHGVVVSCSAGNSG 153
G + + +D S+ I + + G+ V AGN G
Sbjct: 159 G-TNFGS-HDGTSLLERYIDAISRLR-GIAVVVGAGNEG 194
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 46/178 (25%), Positives = 68/178 (38%), Gaps = 41/178 (23%)
Query: 11 NKKIIGARAFYRGYESYMERPIDETEESKSPRDTEG-HGTHTASTAAGSLVSNASLFDYA 69
N +I+G F + S + T+ HGT ST AG Y
Sbjct: 26 NLRILGEYDF--------------VDNSNNTNYTDDDHGTAVLSTMAG----------YT 61
Query: 70 RGEARGMAVKARIAVYKICWSPGCF---DSDILAAMDQAIADGVDVISLSVGASGY---- 122
G G A A + + + + +AA + A + GVD+IS S+G + +
Sbjct: 62 PGVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPT 121
Query: 123 --APQYDQDS----IAIGSFGAAQHGVVVSCSAGNSGPGP---FTATNIAPWILTVGA 171
D D I+ + AA G++V SAGN G A A +L+VGA
Sbjct: 122 YSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGA 179
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173788 cd04056, Peptidases_S53, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 5e-05
Identities = 37/153 (24%), Positives = 57/153 (37%), Gaps = 38/153 (24%)
Query: 73 ARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIAD---GVDVISLSVGA------SGYA 123
A +A A I +Y +PG + L A A+ D VIS+S G YA
Sbjct: 83 AGAIAPGANITLYF---APGTVTNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYA 139
Query: 124 PQYDQDSIAIGSFG-AAQHGVVVSCSAGNSG------PGPFTATNIA-----PWILTVGA 171
+ F AA G+ V ++G+SG G T +++ P++ VG
Sbjct: 140 QRVCN------LFAQAAAQGITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGG 193
Query: 172 STI-----DREFPADAILGDGRIF---GGVSLY 196
+T+ + +G GG S Y
Sbjct: 194 TTLYTGGTGSSAESTVWSSEGGWGGSGGGFSNY 226
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 361 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 6e-05
Identities = 50/173 (28%), Positives = 66/173 (38%), Gaps = 23/173 (13%)
Query: 41 PRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWS-PGCFDSDIL 99
D +GHGT A AA V N L G A G+A A++ +I S + SDI
Sbjct: 36 TSDIDGHGTACAGVAAA--VGNNGL-----GVA-GVAPGAKLMPVRIADSLGYAYWSDIA 87
Query: 100 AAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTA 159
A+ A +G DVIS S G S ++G G VV +AGNSG +
Sbjct: 88 QAITWAADNGADVISNSWGGSDSTESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSG 147
Query: 160 TNIAPWILTVGAST--------------IDREFPADAILGDGRIFGGVSLYAG 198
P ++ V A+ +D P I G G Y G
Sbjct: 148 YAANPSVIAVAATDSNDARASYSNYGNYVDLVAPGVGIWTTGTGRGSAGDYPG 200
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 7e-05
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
Query: 312 SPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVD--- 368
S PAP A +S GP S +KPDV+A G N+ +G+ DL +
Sbjct: 191 SAVGPAPA-GATTSSGPGSPGP--IKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSG 247
Query: 369 --FNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALM 406
F + GTS + P + LAA L P+ SP I+ AL+
Sbjct: 248 GGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIR-ALL 286
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 43.4 bits (101), Expect = 3e-04
Identities = 43/202 (21%), Positives = 68/202 (33%), Gaps = 16/202 (7%)
Query: 23 GYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARI 82
+ + + D GHGTH A T A + N + A+ + VK
Sbjct: 161 AGSAVAGGDFVDGDPEPPFLDDNGHGTHVAGTIAAVIFDNGAGVAGVAPGAKLLLVKVLG 220
Query: 83 AVYKICWSPGCFDSDILAAMDQAIADG--VDVISLSVGASGYAPQYDQDSIAIGSFGAAQ 140
+ S SD+ ++ A G DVI+LS+G S A+ + A
Sbjct: 221 SGGG---SGEL--SDVAEGIEGAANLGGPADVINLSLGGSLSDSASPALGDAL-AAAANA 274
Query: 141 HGVVVSCSAGNSGPGPFTATNIAPW------ILTVGASTIDREFPADAILGDGRIFGGVS 194
GVV+ +AGN G P ++ VGA + + + G +
Sbjct: 275 GGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDLSDTVASFSNDGSPTGVDIAA 334
Query: 195 LYAGESLPDFKLHLVYGGDCGD 216
G ++ GD D
Sbjct: 335 --PGVNILSLSAVNTLPGDGAD 354
|
Length = 508 |
| >gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 25/106 (23%)
Query: 319 KVAAFSSRGPNSLTAEI------LKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNII 372
+A FSSRG T E+ +KPD++ G + GS L+ R +
Sbjct: 165 NIARFSSRGMT--TWELPGGYGRVKPDIVTYGSGV----YGS----KLKGGCRA-----L 209
Query: 373 SGTSMSCPHVSGLAALLRKAYPD----WSPAAIKSALMTTAYNLDN 414
SGTS++ P V+G ALL P+ +PA++K AL+ +A L
Sbjct: 210 SGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLPG 255
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 255 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 34/119 (28%), Positives = 45/119 (37%), Gaps = 28/119 (23%)
Query: 47 HGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDS-----DILAA 101
HGTH A AA E G+A A+I KI S ++ A
Sbjct: 187 HGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKI--GDTRLGSMETGTALVRA 236
Query: 102 MDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQ------HGVVVSCSAGNSGP 154
M AI D+I++S G + + P G HGV+ SAGN+GP
Sbjct: 237 MIAAIETKCDLINMSYGEATHWPNS-------GRIIELMNEAVNKHGVIFVSSAGNNGP 288
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|240338 PTZ00262, PTZ00262, subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 4e-04
Identities = 35/147 (23%), Positives = 56/147 (38%), Gaps = 27/147 (18%)
Query: 299 YPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPT 358
YP VI+ S S PNS + + APG NI ST P
Sbjct: 494 YPPILSKKLRNVITVSNLIKDKNNQYSLSPNSFYSAKY-CQLAAPGTNIY-----STFPK 547
Query: 359 DLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGEN 418
+ + ++GTSM+ PHV+ +A+L+ P S + L + L +
Sbjct: 548 N--------SYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQL----PS 595
Query: 419 IKDLASGEESTPFIHGAGHVDPNRALN 445
+K+ G++D + A+N
Sbjct: 596 LKNKVK---------WGGYLDIHHAVN 613
|
Length = 639 |
| >gnl|CDD|239048 cd02133, PA_C5a_like, PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 5e-04
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 12/115 (10%)
Query: 220 YMGRLEPSK-----VQGKIVVCDRGGNARVEKGAAVKLAGGLGMILAN-TDESGEELIAD 273
G P V+GKI + RG VEK A K AG +G+I+ N D + +
Sbjct: 32 DAGLGTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGE 91
Query: 274 SHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGP 328
+ IP + G+ ++ ++ + + F + P +A FSSRGP
Sbjct: 92 AVFIPVVFISKEDGEALKAALES----SKKLTFNTKKEKAT--NPDLADFSSRGP 140
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 143 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 7e-04
Identities = 45/152 (29%), Positives = 63/152 (41%), Gaps = 29/152 (19%)
Query: 38 SKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSD 97
+ HGTH A T A V+N G A G+A ARI ++ G SD
Sbjct: 64 GSGVSPSSWHGTHVAGTIAA--VTNNG-----VGVA-GVAWGARILPVRVLGKCGGTLSD 115
Query: 98 ILAAMDQA---IADGV-------DVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSC 147
I+ M A GV VI+LS+G G Q++I GV+V
Sbjct: 116 IVDGMRWAAGLPVPGVPVNPNPAKVINLSLGGDGACSATMQNAIN----DVRARGVLVVV 171
Query: 148 SAGNSGPGPFTATNIAPW----ILTVGASTID 175
+AGN G +A+ AP ++ VGA+ +
Sbjct: 172 AAGNEGS---SASVDAPANCRGVIAVGATDLR 200
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|234383 TIGR03895, protease_PatA, cyanobactin maturation protease, PatA/PatG family | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 21/76 (27%)
Query: 340 VIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALL------RKAY 393
++APG NIL A G L SGTS + P V+G+AALL +
Sbjct: 138 ILAPGENILGAQPGG-ETVRL------------SGTSFATPVVTGVAALLLSLQLQQGET 184
Query: 394 PDWSPAAIKSALMTTA 409
PD P A+++AL+ +A
Sbjct: 185 PD--PQAVRTALLNSA 198
|
This model describes a protease domain associated with the maturation of various members of the cyanobactin family of ribosomally produced, heavily modified bioactive metabolites. Members include the PatA protein and C-terminal domain of the PatG protein of Prochloron didemni, TenA and a region of TenG from Nostoc spongiaeforme var. tenue, etc. Length = 602 |
| >gnl|CDD|173819 cd07494, Peptidases_S8_10, Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.001
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 349 AAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTT 408
AA+ T P D + + SGTS + P V+G+ AL+ +A P SP +S L T
Sbjct: 230 AAFPDGTPPND--------GWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKT 281
Query: 409 A 409
A
Sbjct: 282 A 282
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 298 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 604 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 99.98 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 99.95 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 99.95 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.81 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.75 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 99.41 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 99.4 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.26 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 99.02 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 98.92 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 98.83 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 98.82 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 98.77 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 98.77 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 98.76 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 98.72 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 98.72 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 98.67 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 98.63 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 98.62 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 98.6 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 98.57 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 98.5 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 98.32 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 98.19 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 97.65 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 97.43 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 97.41 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 97.14 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 97.0 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 96.87 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 96.65 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 96.57 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 96.28 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 96.04 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 95.86 | |
| KOG3920 | 193 | consensus Uncharacterized conserved protein, conta | 95.1 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 94.58 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 93.65 | |
| cd04821 | 157 | PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do | 93.21 | |
| PF11614 | 118 | FixG_C: IG-like fold at C-terminal of FixG, putati | 88.57 | |
| PF06030 | 121 | DUF916: Bacterial protein of unknown function (DUF | 84.35 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 84.15 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=367.46 Aligned_cols=237 Identities=61% Similarity=0.961 Sum_probs=199.5
Q ss_pred CCCCCCCCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEE
Q 045236 5 FPASACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAV 84 (604)
Q Consensus 5 f~~~~cn~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ 84 (604)
|....||+||+|+|+|.++.....+ .+...+..+|.|..||||||||||||+...+....|...+.+.||||+|+|+.
T Consensus 70 ~~~~~~~~ki~g~~~~~~~~~~~~~--~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~ 147 (307)
T cd04852 70 FNPFSCNNKLIGARYFSDGYDAYGG--FNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAV 147 (307)
T ss_pred cCccCcCCeEEEEEEcccchhhccC--cccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEE
Confidence 3345699999999999987644322 23445577899999999999999999987766666666677899999999999
Q ss_pred EEeecC-CCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCcccCC
Q 045236 85 YKICWS-PGCFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIA 163 (604)
Q Consensus 85 ~kv~~~-~g~~~~dil~aid~A~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~a 163 (604)
+|+++. ..+..+++++||++|++++++|||||||.. ......+.+..+++++.++|++||+||||+|+...+.++..
T Consensus 148 ~kv~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~--~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~ 225 (307)
T cd04852 148 YKVCWPDGGCFGSDILAAIDQAIADGVDVISYSIGGG--SPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVA 225 (307)
T ss_pred EEEecCCCCccHHHHHHHHHHHHHcCCCEEEeCCCCC--CCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCC
Confidence 999987 458888999999999999999999999988 33456678888888999999999999999998888888899
Q ss_pred CceEeeccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchh
Q 045236 164 PWILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNAR 243 (604)
Q Consensus 164 p~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~ 243 (604)
||+++|||.
T Consensus 226 ~~vi~Vga~----------------------------------------------------------------------- 234 (307)
T cd04852 226 PWVTTVAAS----------------------------------------------------------------------- 234 (307)
T ss_pred CCeEEEEec-----------------------------------------------------------------------
Confidence 999999972
Q ss_pred hhHHHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccc
Q 045236 244 VEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAF 323 (604)
Q Consensus 244 ~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~f 323 (604)
.
T Consensus 235 -------------------------------------------------------------------------~------ 235 (307)
T cd04852 235 -------------------------------------------------------------------------T------ 235 (307)
T ss_pred -------------------------------------------------------------------------c------
Confidence 1
Q ss_pred cCCCCCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHH
Q 045236 324 SSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKS 403 (604)
Q Consensus 324 SS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks 403 (604)
+||||+|||.+|+++++.... .........|..++|||||||+|||++|||+|+||+|+|.|||+
T Consensus 236 ------------~~~di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~ 300 (307)
T cd04852 236 ------------LKPDIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKS 300 (307)
T ss_pred ------------CccceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 477999999999999875311 11122336899999999999999999999999999999999999
Q ss_pred HHHhccc
Q 045236 404 ALMTTAY 410 (604)
Q Consensus 404 ~L~~TA~ 410 (604)
+|++||+
T Consensus 301 ~L~~tA~ 307 (307)
T cd04852 301 ALMTTAY 307 (307)
T ss_pred HHHHhcC
Confidence 9999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=353.93 Aligned_cols=228 Identities=27% Similarity=0.296 Sum_probs=179.0
Q ss_pred CCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCCCCHHHHHHHHHHHHHCCCcEEEEcccC
Q 045236 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGA 119 (604)
Q Consensus 40 sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~dil~aid~A~~~gvdVIn~SlG~ 119 (604)
.+.|..|||||||||| .||||+|+|+.+|+. ...+++++||+||++.|++|||||||.
T Consensus 43 ~~~d~~gHGT~vAgii------------------~GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~g~ 100 (275)
T cd05562 43 GGSGGGDEGRAMLEII------------------HDIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDIGY 100 (275)
T ss_pred CCCCCCchHHHHHHHH------------------hccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEecccc
Confidence 4568899999999999 389999999999874 347889999999999999999999998
Q ss_pred CCCCCCC-cccHHHHHHHhhhcC-CcEEEEcCCCCCCCCC-CcccCCCceEeeccCCCCCccceEEEcCCCcEEEeeeec
Q 045236 120 SGYAPQY-DQDSIAIGSFGAAQH-GVVVSCSAGNSGPGPF-TATNIAPWILTVGASTIDREFPADAILGDGRIFGGVSLY 196 (604)
Q Consensus 120 ~~~~~~~-~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~-~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~ 196 (604)
. ..++ ....+..++.++.++ |++||+||||+|+... ..+...|++|+|||.+.+.........+
T Consensus 101 ~--~~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~----------- 167 (275)
T cd05562 101 L--NEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPA----------- 167 (275)
T ss_pred c--CCCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCcccccccc-----------
Confidence 7 3333 345678888888887 9999999999998543 3456889999999965432210000000
Q ss_pred cCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccccccccc
Q 045236 197 AGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADSHL 276 (604)
Q Consensus 197 ~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ 276 (604)
T Consensus 168 -------------------------------------------------------------------------------- 167 (275)
T cd05562 168 -------------------------------------------------------------------------------- 167 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCC-cEEecccCCC
Q 045236 277 IPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGV-NILAAWTGST 355 (604)
Q Consensus 277 ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~-~I~sa~~~~~ 355 (604)
........+.|++|||+. ++.+||||+|||. .+.+.+..
T Consensus 168 ------------------------------------~~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~-- 207 (275)
T cd05562 168 ------------------------------------PGGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG-- 207 (275)
T ss_pred ------------------------------------cCCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC--
Confidence 000012345688899987 6789999999975 44554433
Q ss_pred CCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCCCC
Q 045236 356 GPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGA 435 (604)
Q Consensus 356 ~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~ 435 (604)
+.|..++|||||||||||++|||+|++|+|++.+||++|++||+++.. +..+..|||
T Consensus 208 -----------~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~------------~g~d~~~G~ 264 (275)
T cd05562 208 -----------DGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGE------------PGYDNASGS 264 (275)
T ss_pred -----------CceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC------------CCCCCCcCc
Confidence 578999999999999999999999999999999999999999987742 234568999
Q ss_pred cccCccccCC
Q 045236 436 GHVDPNRALN 445 (604)
Q Consensus 436 G~id~~~A~~ 445 (604)
|+||+.+|++
T Consensus 265 G~vda~~Av~ 274 (275)
T cd05562 265 GLVDADRAVA 274 (275)
T ss_pred CcccHHHHhh
Confidence 9999999986
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-42 Score=353.41 Aligned_cols=237 Identities=32% Similarity=0.346 Sum_probs=166.5
Q ss_pred CCCCCCCCChHHHHHHhhcCCCCCCCcccc-CCCceeeecCCCeEEEEEeecCCC-CCHHHHHH-------HHHHHH--H
Q 045236 39 KSPRDTEGHGTHTASTAAGSLVSNASLFDY-ARGEARGMAVKARIAVYKICWSPG-CFDSDILA-------AMDQAI--A 107 (604)
Q Consensus 39 ~sp~D~~GHGThVAgiiaG~~~~~~~~~G~-~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~-------aid~A~--~ 107 (604)
..+.|.+||||||||||||+.....+.+++ ....+.||||+|+|+.+|++...+ +....++. +++|.+ +
T Consensus 50 ~~~~D~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 129 (311)
T cd07497 50 VIMYDFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGG 129 (311)
T ss_pred CCCCCccccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccC
Confidence 347899999999999999986433222221 123469999999999999997543 32233333 344433 6
Q ss_pred CCCcEEEEcccCCCCCCCC-----cccHHHHHHHhh-hcCCcEEEEcCCCCCCCCCC--cccCCCceEeeccCCCCCccc
Q 045236 108 DGVDVISLSVGASGYAPQY-----DQDSIAIGSFGA-AQHGVVVSCSAGNSGPGPFT--ATNIAPWILTVGASTIDREFP 179 (604)
Q Consensus 108 ~gvdVIn~SlG~~~~~~~~-----~~~~~~~a~~~a-~~~Gi~vV~AAGN~G~~~~~--~~~~ap~vitVgAst~d~~~~ 179 (604)
+++||||||||... ..+ ..+..+.....+ .++||++|+||||+|+...+ .+..++++|+|||++.....+
T Consensus 130 ~~~~VIN~S~G~~~--~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~ 207 (311)
T cd07497 130 PRVDVISNSWGISN--FAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRP 207 (311)
T ss_pred CCceEEEecCCcCC--CCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccc
Confidence 79999999999862 211 112333333332 38999999999999986443 455789999999975321100
Q ss_pred eEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEE
Q 045236 180 ADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMI 259 (604)
Q Consensus 180 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i 259 (604)
.. .+.+
T Consensus 208 ~~-------------------------~~~~------------------------------------------------- 213 (311)
T cd07497 208 FY-------------------------LFGY------------------------------------------------- 213 (311)
T ss_pred hh-------------------------hhcc-------------------------------------------------
Confidence 00 0000
Q ss_pred EEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCc
Q 045236 260 LANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPD 339 (604)
Q Consensus 260 ~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPD 339 (604)
.... .+.++.||||||+. ++++|||
T Consensus 214 ----------------------------------------------------~~~~-~~~~~~fSs~Gp~~--~g~~kPd 238 (311)
T cd07497 214 ----------------------------------------------------LPGG-SGDVVSWSSRGPSI--AGDPKPD 238 (311)
T ss_pred ----------------------------------------------------ccCC-CCCccccccCCCCc--ccCCCCc
Confidence 0011 56789999999998 7899999
Q ss_pred eEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCC------CCCHHHHHHHHHhcc
Q 045236 340 VIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYP------DWSPAAIKSALMTTA 409 (604)
Q Consensus 340 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P------~~sp~~Iks~L~~TA 409 (604)
|+|||++|+++.+...... .......|..++|||||||||||++|||+|++| .++|++||.+|++||
T Consensus 239 v~ApG~~i~s~~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 239 LAAIGAFAWAPGRVLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred eeccCcceEeecccCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 9999999999877542100 011124799999999999999999999999886 689999999999997
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=372.59 Aligned_cols=231 Identities=19% Similarity=0.214 Sum_probs=177.2
Q ss_pred CCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-CCHHHHHHHHHHHHHCCCcEEE
Q 045236 36 EESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDILAAMDQAIADGVDVIS 114 (604)
Q Consensus 36 ~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~aid~A~~~gvdVIn 114 (604)
++..+|.|.+||||||||||||...+. ..+.||||+|+|+.+|+++..+ +..+++++||+||++.|++|||
T Consensus 369 d~~~~P~D~~GHGTHVAGIIAA~gnN~--------~Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VIN 440 (639)
T PTZ00262 369 NNDGGPMDDNYHGTHVSGIISAIGNNN--------IGIVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMIN 440 (639)
T ss_pred CCCCCCCCCCCcchHHHHHHhccccCC--------CceeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEE
Confidence 344578999999999999999986321 2258999999999999998766 7888999999999999999999
Q ss_pred EcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCc--------------cc----CCCceEeeccCCCCC
Q 045236 115 LSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTA--------------TN----IAPWILTVGASTIDR 176 (604)
Q Consensus 115 ~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--------------~~----~ap~vitVgAst~d~ 176 (604)
||||+.. ....+..++.+|.++|++||+||||+|+..... +. ..++||+|||...+.
T Consensus 441 mSlG~~~-----~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~ 515 (639)
T PTZ00262 441 GSFSFDE-----YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDK 515 (639)
T ss_pred eccccCC-----ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCC
Confidence 9999762 235677888899999999999999998643211 11 134556665532110
Q ss_pred ccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCce
Q 045236 177 EFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGL 256 (604)
Q Consensus 177 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~ 256 (604)
.
T Consensus 516 ~------------------------------------------------------------------------------- 516 (639)
T PTZ00262 516 N------------------------------------------------------------------------------- 516 (639)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred EEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCcc
Q 045236 257 GMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEIL 336 (604)
Q Consensus 257 g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~l 336 (604)
. .-..+.||.+|. .
T Consensus 517 ----------------------------------------------------------~-~~s~s~~Snyg~-------~ 530 (639)
T PTZ00262 517 ----------------------------------------------------------N-QYSLSPNSFYSA-------K 530 (639)
T ss_pred ----------------------------------------------------------C-cccccccccCCC-------C
Confidence 0 111234555542 2
Q ss_pred CCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCC
Q 045236 337 KPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSG 416 (604)
Q Consensus 337 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~~ 416 (604)
++||+|||++|+++++. +.|..++|||||||||||+||||++++|+|++.||+++|++||.++...
T Consensus 531 ~VDIaAPG~dI~St~p~-------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~- 596 (639)
T PTZ00262 531 YCQLAAPGTNIYSTFPK-------------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSL- 596 (639)
T ss_pred cceEEeCCCCeeeccCC-------------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCC-
Confidence 45999999999999876 5799999999999999999999999999999999999999999876421
Q ss_pred CccccCCCCCCCCCCCCCCcccCccccCCCCcee
Q 045236 417 ENIKDLASGEESTPFIHGAGHVDPNRALNPGLVY 450 (604)
Q Consensus 417 ~~~~~~~~~~~~~~~~~G~G~id~~~A~~~glv~ 450 (604)
.....| +|+||+.+|++..+-+
T Consensus 597 -----------~n~~~w-gG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 597 -----------KNKVKW-GGYLDIHHAVNLAIAS 618 (639)
T ss_pred -----------CCcccc-CcEEcHHHHHHHHHhc
Confidence 111233 3899999999865533
|
|
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=338.52 Aligned_cols=204 Identities=28% Similarity=0.386 Sum_probs=170.1
Q ss_pred CCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-CCHHHHHHHHHHHHHCCCcEEEEccc
Q 045236 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDILAAMDQAIADGVDVISLSVG 118 (604)
Q Consensus 40 sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~aid~A~~~gvdVIn~SlG 118 (604)
++.|..||||||||||+|+.. .+.||||+|+|+.+|++.+.+ +..++++++|++|+++++||||||||
T Consensus 40 ~~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G 108 (255)
T cd07479 40 TLDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIG 108 (255)
T ss_pred CCCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeecc
Confidence 456889999999999999742 148999999999999998766 56677899999999999999999999
Q ss_pred CCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCC--cccCCCceEeeccCCCCCccceEEEcCCCcEEEeeeec
Q 045236 119 ASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFT--ATNIAPWILTVGASTIDREFPADAILGDGRIFGGVSLY 196 (604)
Q Consensus 119 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~ 196 (604)
... +...++..++.++.++|++||+||||+|+...+ .+...+++|+|||...
T Consensus 109 ~~~----~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~---------------------- 162 (255)
T cd07479 109 GPD----FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF---------------------- 162 (255)
T ss_pred CCC----CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc----------------------
Confidence 862 334566667778889999999999999975443 3456788889887321
Q ss_pred cCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccccccccc
Q 045236 197 AGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADSHL 276 (604)
Q Consensus 197 ~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ 276 (604)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCC----CCCCccCCceEeCCCcEEeccc
Q 045236 277 IPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNS----LTAEILKPDVIAPGVNILAAWT 352 (604)
Q Consensus 277 ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~----~~~~~lKPDI~APG~~I~sa~~ 352 (604)
.+.++.|||+|++. ...+++||||.|||.+|+++..
T Consensus 163 ----------------------------------------~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~ 202 (255)
T cd07479 163 ----------------------------------------DDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKL 202 (255)
T ss_pred ----------------------------------------CCccccccCCCCCcccccCCCCCcCccEEecCCCeecccc
Confidence 44568899999652 1257889999999999998765
Q ss_pred CCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCC----CCCHHHHHHHHHhccccCC
Q 045236 353 GSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYP----DWSPAAIKSALMTTAYNLD 413 (604)
Q Consensus 353 ~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P----~~sp~~Iks~L~~TA~~~~ 413 (604)
. ..|..++|||||||||||++|||+|++| .++|.+||++|++||+++.
T Consensus 203 ~-------------~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 203 K-------------GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred C-------------CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 4 5788999999999999999999999998 7999999999999999864
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=352.06 Aligned_cols=264 Identities=29% Similarity=0.392 Sum_probs=202.6
Q ss_pred CCCCCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEe
Q 045236 8 SACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKI 87 (604)
Q Consensus 8 ~~cn~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv 87 (604)
..+|+||++.++|.++... .....|..+|||||||||+|...... ....+.||||+|+|+.+|+
T Consensus 56 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v 119 (346)
T cd07475 56 KYYNEKVPFAYNYADNNDD-----------ILDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKV 119 (346)
T ss_pred cccccCCCeeEcCCCCCCc-----------cCCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEe
Confidence 3578999999999976311 11145789999999999999875322 1234699999999999999
Q ss_pred ecC--C-CCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCc-----
Q 045236 88 CWS--P-GCFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTA----- 159 (604)
Q Consensus 88 ~~~--~-g~~~~dil~aid~A~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~----- 159 (604)
+.. . .+...++++|++++++.|++|||||||... ........+..++.++.++|++||+||||+|......
T Consensus 120 ~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~-~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~ 198 (346)
T cd07475 120 FSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGSTA-GFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLA 198 (346)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCC-CCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCccc
Confidence 973 2 367788999999999999999999999884 2224456778888888999999999999998653221
Q ss_pred -----------ccCCCceEeeccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCC
Q 045236 160 -----------TNIAPWILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSK 228 (604)
Q Consensus 160 -----------~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~ 228 (604)
+...+++|+|++...
T Consensus 199 ~~~~~~~~~~~p~~~~~~i~Vga~~~------------------------------------------------------ 224 (346)
T cd07475 199 TNNPDTGTVGSPATADDVLTVASANK------------------------------------------------------ 224 (346)
T ss_pred ccCCCcceecCCccCCCceEEeeccc------------------------------------------------------
Confidence 112344444444210
Q ss_pred ccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeee
Q 045236 229 VQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRG 308 (604)
Q Consensus 229 ~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 308 (604)
T Consensus 225 -------------------------------------------------------------------------------- 224 (346)
T cd07475 225 -------------------------------------------------------------------------------- 224 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHH
Q 045236 309 TVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAAL 388 (604)
Q Consensus 309 ~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aAL 388 (604)
...... ...++.||+|||+. ..++||||+|||.+|+++... +.|..++|||||||+|||++||
T Consensus 225 -~~~~~~-~~~~~~~S~~G~~~--~~~~~pdi~apG~~i~s~~~~-------------~~~~~~~GTS~AaP~VaG~aAL 287 (346)
T cd07475 225 -KVPNPN-GGQMSGFSSWGPTP--DLDLKPDITAPGGNIYSTVND-------------NTYGYMSGTSMASPHVAGASAL 287 (346)
T ss_pred -ccCCCC-CCccCCCcCCCCCc--ccCcCCeEEeCCCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHH
Confidence 000011 56778999999998 689999999999999998765 5789999999999999999999
Q ss_pred HHHh----CCCCCHHH----HHHHHHhccccCCCCCCccccCCCCCCCCCCCCCCcccCccccCC
Q 045236 389 LRKA----YPDWSPAA----IKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALN 445 (604)
Q Consensus 389 l~q~----~P~~sp~~----Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A~~ 445 (604)
|+|+ +|.|++.+ ||.+|++||.+..... .....+.+..+|+|+||+.+|++
T Consensus 288 l~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~~------~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 288 VKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSE------DTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcccccC------CCCccCCccccCcchhcHHHhhC
Confidence 9997 79999876 7889999998532111 11456778899999999999985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=351.43 Aligned_cols=220 Identities=30% Similarity=0.336 Sum_probs=166.0
Q ss_pred CCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC---CCHHHHHHHHHHHHHCCCcEEEEccc
Q 045236 42 RDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG---CFDSDILAAMDQAIADGVDVISLSVG 118 (604)
Q Consensus 42 ~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~dil~aid~A~~~gvdVIn~SlG 118 (604)
.|+.||||||||||||+..+ ...+.|+||+|+|+.+|+++... +...++++||++|++.|+||||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~--------~~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPE--------EPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCC--------CCceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 58899999999999998532 22358999999999999986532 23457899999999999999999999
Q ss_pred CCCCCCCCcccHHHHHHHhh-hcCCcEEEEcCCCCCCCCCCcc--c-CCCceEeeccCCCCCccceEEEcCCCcEEEeee
Q 045236 119 ASGYAPQYDQDSIAIGSFGA-AQHGVVVSCSAGNSGPGPFTAT--N-IAPWILTVGASTIDREFPADAILGDGRIFGGVS 194 (604)
Q Consensus 119 ~~~~~~~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~G~~~~~~~--~-~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~ 194 (604)
... ..+. ...+...+.++ .++||++|+||||+|+...+.. . .++.+|+|||..........
T Consensus 254 ~~~-~~~~-~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~------------- 318 (412)
T cd04857 254 EAT-HWPN-SGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE------------- 318 (412)
T ss_pred cCC-CCcc-chHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc-------------
Confidence 873 2121 22344444443 4789999999999998765543 2 46899999985321100000
Q ss_pred eccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccccccc
Q 045236 195 LYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADS 274 (604)
Q Consensus 195 ~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~ 274 (604)
|.
T Consensus 319 -----------y~------------------------------------------------------------------- 320 (412)
T cd04857 319 -----------YS------------------------------------------------------------------- 320 (412)
T ss_pred -----------cc-------------------------------------------------------------------
Confidence 00
Q ss_pred cccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEecccCC
Q 045236 275 HLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGS 354 (604)
Q Consensus 275 ~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~ 354 (604)
...+. .+.++.||||||+. ++.+||||+|||..|++.-...
T Consensus 321 ------------------------------------~~~~~-~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~~ 361 (412)
T cd04857 321 ------------------------------------LREKL-PGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNWT 361 (412)
T ss_pred ------------------------------------ccccc-CCccccccccCCcc--cCCcCceEEeCCCcEEEcccCC
Confidence 00011 45678999999998 8999999999999998752211
Q ss_pred CCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHH----hCCCCCHHHHHHHHHhccccC
Q 045236 355 TGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRK----AYPDWSPAAIKSALMTTAYNL 412 (604)
Q Consensus 355 ~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~P~~sp~~Iks~L~~TA~~~ 412 (604)
...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 362 -----------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 362 -----------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred -----------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 15789999999999999999999975 579999999999999999864
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=330.00 Aligned_cols=204 Identities=27% Similarity=0.379 Sum_probs=171.6
Q ss_pred CCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC----CCHHHHHHHHHHHHHCCCcEEEE
Q 045236 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG----CFDSDILAAMDQAIADGVDVISL 115 (604)
Q Consensus 40 sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g----~~~~dil~aid~A~~~gvdVIn~ 115 (604)
.+.|.++|||||||||+|+... . .|+||+|+|+.+|++...+ +...++++||+||++.|++||||
T Consensus 31 ~~~~~~~HGT~vAgiia~~~~~---------~--~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~ 99 (239)
T cd05561 31 GAPAPSAHGTAVASLLAGAGAQ---------R--PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNI 99 (239)
T ss_pred CCCCCCCCHHHHHHHHhCCCCC---------C--cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEe
Confidence 3568899999999999998632 1 6999999999999998642 67788999999999999999999
Q ss_pred cccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCC-CCcccCCCceEeeccCCCCCccceEEEcCCCcEEEeee
Q 045236 116 SVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGP-FTATNIAPWILTVGASTIDREFPADAILGDGRIFGGVS 194 (604)
Q Consensus 116 SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~ 194 (604)
|||.. . ...+..++.++.++|++||+||||+|+.. ..++...+++|+|++.+.
T Consensus 100 S~g~~--~----~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~-------------------- 153 (239)
T cd05561 100 SLAGP--P----NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDA-------------------- 153 (239)
T ss_pred CCCCC--C----CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecC--------------------
Confidence 99976 2 35677788889999999999999999753 345667788888887321
Q ss_pred eccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccccccc
Q 045236 195 LYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADS 274 (604)
Q Consensus 195 ~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~ 274 (604)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEecccCC
Q 045236 275 HLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGS 354 (604)
Q Consensus 275 ~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~ 354 (604)
.+.++.||++|+.. ||.|||.+|+++.+.
T Consensus 154 ------------------------------------------~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~- 182 (239)
T cd05561 154 ------------------------------------------RGRLYREANRGAHV--------DFAAPGVDVWVAAPG- 182 (239)
T ss_pred ------------------------------------------CCCccccCCCCCcc--------eEEccccceecccCC-
Confidence 34557899999876 999999999997665
Q ss_pred CCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCCC
Q 045236 355 TGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHG 434 (604)
Q Consensus 355 ~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G 434 (604)
+.|..++|||||||||||++|||+|++| ++++|||++|++||+++.. +..+..||
T Consensus 183 ------------~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~------------~~~d~~~G 237 (239)
T cd05561 183 ------------GGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGP------------PGRDPVFG 237 (239)
T ss_pred ------------CCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCC------------CCcCCCcC
Confidence 5799999999999999999999999999 9999999999999997743 33446889
Q ss_pred Cc
Q 045236 435 AG 436 (604)
Q Consensus 435 ~G 436 (604)
||
T Consensus 238 ~G 239 (239)
T cd05561 238 YG 239 (239)
T ss_pred CC
Confidence 87
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=335.20 Aligned_cols=266 Identities=44% Similarity=0.591 Sum_probs=202.6
Q ss_pred CCCCceEEEEeccCCcccccCCCC-CCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEe
Q 045236 9 ACNKKIIGARAFYRGYESYMERPI-DETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKI 87 (604)
Q Consensus 9 ~cn~Kiigar~~~~~~~~~~~~~~-~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv 87 (604)
+.++++++.++|.........+.. ..........|..||||||||+|+|...+ ...+.|+||+|+|+.+|+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~vAgiiag~~~n--------~~~~~Giap~a~i~~~~~ 96 (295)
T cd07474 25 FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDATGHGTHVAGIIAGNGVN--------VGTIKGVAPKADLYAYKV 96 (295)
T ss_pred CCCCceeeeeECccCCCCcccccccccccccCCCCCCCCcHHHHHHHHhcCCCc--------cCceEeECCCCeEEEEEe
Confidence 456889999999875322111000 00011123557899999999999998643 123589999999999999
Q ss_pred ecCCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCc--ccCCC
Q 045236 88 CWSPG-CFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTA--TNIAP 164 (604)
Q Consensus 88 ~~~~g-~~~~dil~aid~A~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~ap 164 (604)
+...+ +...++++||+++++++++|||||||... . ...+.+..++.++.++|+++|+||||+|...... +...+
T Consensus 97 ~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~--~-~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~ 173 (295)
T cd07474 97 LGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV--N-GPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAP 173 (295)
T ss_pred ecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC--C-CCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCC
Confidence 97444 77888999999999999999999999872 2 2456788888899999999999999998765443 55788
Q ss_pred ceEeeccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhh
Q 045236 165 WILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARV 244 (604)
Q Consensus 165 ~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~ 244 (604)
++|+||++.....
T Consensus 174 ~~i~Vga~~~~~~------------------------------------------------------------------- 186 (295)
T cd07474 174 SAITVGASTVADV------------------------------------------------------------------- 186 (295)
T ss_pred CeEEEeeeeccCc-------------------------------------------------------------------
Confidence 9999998531000
Q ss_pred hHHHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCcccccc
Q 045236 245 EKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFS 324 (604)
Q Consensus 245 ~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fS 324 (604)
.. ......|+
T Consensus 187 ---------------------------------------------------------------------~~-~~~~~~~~ 196 (295)
T cd07474 187 ---------------------------------------------------------------------AE-ADTVGPSS 196 (295)
T ss_pred ---------------------------------------------------------------------CC-CCceeccC
Confidence 00 22233444
Q ss_pred CC-CCCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHH
Q 045236 325 SR-GPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKS 403 (604)
Q Consensus 325 S~-GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks 403 (604)
++ |++. ...+||||+|||.+|+++++... ..|..++|||||||+|||++|||+|++|+|++++||+
T Consensus 197 s~~~~~~--~~~~kpdv~apG~~i~~~~~~~~-----------~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~ 263 (295)
T cd07474 197 SRGPPTS--DSAIKPDIVAPGVDIMSTAPGSG-----------TGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKA 263 (295)
T ss_pred CCCCCCC--CCCcCCCEECCcCceEeeccCCC-----------CceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHH
Confidence 44 5554 67999999999999999987631 5789999999999999999999999999999999999
Q ss_pred HHHhccccCCCCCCccccCCCCCCCCCCCCCCcccCcccc
Q 045236 404 ALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRA 443 (604)
Q Consensus 404 ~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A 443 (604)
+|++||++....+ ....++..+|+|+||+.+|
T Consensus 264 ~L~~tA~~~~~~~--------~~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 264 ALMNTAKPLYDSD--------GVVYPVSRQGAGRVDALRA 295 (295)
T ss_pred HHHhhCcccccCC--------CCcCChhccCcceeccccC
Confidence 9999999876443 2223557899999999987
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-40 Score=332.46 Aligned_cols=220 Identities=33% Similarity=0.391 Sum_probs=180.6
Q ss_pred CCCCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEee
Q 045236 9 ACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKIC 88 (604)
Q Consensus 9 ~cn~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~ 88 (604)
.+|.+|++.++|.+... .+ ..|.+||||||||||+|+.. +.+.||||+|+|+.+|+.
T Consensus 24 ~~~~~i~~~~~~~~~~~----------~~---~~~~~~HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~ 80 (261)
T cd07493 24 FKNLRILGEYDFVDNSN----------NT---NYTDDDHGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTE 80 (261)
T ss_pred ccCCceeeeecCccCCC----------CC---CCCCCCchhhhheeeeeCCC----------CCEEEeCCCCEEEEEEec
Confidence 37899999999987521 10 36889999999999999852 235899999999999987
Q ss_pred cCCC---CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCc------------ccHHHHHHHhhhcCCcEEEEcCCCCC
Q 045236 89 WSPG---CFDSDILAAMDQAIADGVDVISLSVGASGYAPQYD------------QDSIAIGSFGAAQHGVVVSCSAGNSG 153 (604)
Q Consensus 89 ~~~g---~~~~dil~aid~A~~~gvdVIn~SlG~~~~~~~~~------------~~~~~~a~~~a~~~Gi~vV~AAGN~G 153 (604)
.... ....++++|+++|.+.|++|||||||... .... ...+..++..+.++|+++|+||||+|
T Consensus 81 ~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~--~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g 158 (261)
T cd07493 81 DVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTT--FDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEG 158 (261)
T ss_pred ccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCC--CCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCC
Confidence 5432 34556889999999999999999999873 2111 13567788888999999999999999
Q ss_pred CC---CCCcccCCCceEeeccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCcc
Q 045236 154 PG---PFTATNIAPWILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQ 230 (604)
Q Consensus 154 ~~---~~~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~ 230 (604)
.. ....+...+++|+|||...
T Consensus 159 ~~~~~~~~~Pa~~~~vi~Vga~~~-------------------------------------------------------- 182 (261)
T cd07493 159 STQWKGIGAPADAENVLSVGAVDA-------------------------------------------------------- 182 (261)
T ss_pred CCCCCcccCcccCCceEEEEEecc--------------------------------------------------------
Confidence 76 3455667889999997321
Q ss_pred ccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeee
Q 045236 231 GKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTV 310 (604)
Q Consensus 231 gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~ 310 (604)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHH
Q 045236 311 ISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLR 390 (604)
Q Consensus 311 ~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~ 390 (604)
.+.++.||++||.. ++++||||+|||.+|++.... +.|..++|||||||||||++|||+
T Consensus 183 ------~~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~ 241 (261)
T cd07493 183 ------NGNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGD-------------GNITYANGTSFSCPLIAGLIACLW 241 (261)
T ss_pred ------CCCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCC-------------CcEEeeCcHHHHHHHHHHHHHHHH
Confidence 34567899999987 789999999999999985443 578999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHhccc
Q 045236 391 KAYPDWSPAAIKSALMTTAY 410 (604)
Q Consensus 391 q~~P~~sp~~Iks~L~~TA~ 410 (604)
|++|+|++.|||++|++||+
T Consensus 242 ~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 242 QAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred HHCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=338.32 Aligned_cols=258 Identities=32% Similarity=0.435 Sum_probs=203.8
Q ss_pred CceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCC
Q 045236 12 KKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSP 91 (604)
Q Consensus 12 ~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~ 91 (604)
.|+.+.++|...... . .+...+..+|.|..||||||||||+|+..+ . .+.||||+|+|+.+|++...
T Consensus 39 ~~~~~~~d~~~~~~~--~--~~~~~~~~~~~d~~gHGT~vAgiia~~~~~----~-----~~~GiAp~a~i~~~~v~~~~ 105 (312)
T cd07489 39 CKVAGGYDFVGDDYD--G--TNPPVPDDDPMDCQGHGTHVAGIIAANPNA----Y-----GFTGVAPEATLGAYRVFGCS 105 (312)
T ss_pred ceeccccccCCcccc--c--ccCCCCCCCCCCCCCcHHHHHHHHhcCCCC----C-----ceEEECCCCEEEEEEeecCC
Confidence 356666777643211 0 123455667889999999999999998743 2 24899999999999999865
Q ss_pred C-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCC---CcccCCCceE
Q 045236 92 G-CFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPF---TATNIAPWIL 167 (604)
Q Consensus 92 g-~~~~dil~aid~A~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~ap~vi 167 (604)
+ ...+.++++|++|++++++|||+|||.. . .+..+.+...+.++.++|+++|+||||+|.... ..+...+++|
T Consensus 106 ~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~--~-~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi 182 (312)
T cd07489 106 GSTTEDTIIAAFLRAYEDGADVITASLGGP--S-GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVI 182 (312)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEeCCCcC--C-CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeE
Confidence 5 5667789999999999999999999987 2 344577888888888999999999999986532 2345667788
Q ss_pred eeccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHH
Q 045236 168 TVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKG 247 (604)
Q Consensus 168 tVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~ 247 (604)
+||+.+
T Consensus 183 ~Vga~~-------------------------------------------------------------------------- 188 (312)
T cd07489 183 AVASVD-------------------------------------------------------------------------- 188 (312)
T ss_pred EEEEec--------------------------------------------------------------------------
Confidence 887621
Q ss_pred HHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCC
Q 045236 248 AAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRG 327 (604)
Q Consensus 248 ~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~G 327 (604)
+.||++|
T Consensus 189 -------------------------------------------------------------------------~~~s~~g 195 (312)
T cd07489 189 -------------------------------------------------------------------------SYFSSWG 195 (312)
T ss_pred -------------------------------------------------------------------------CCccCCC
Confidence 3688999
Q ss_pred CCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhC-CCCCHHHHHHHHH
Q 045236 328 PNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAY-PDWSPAAIKSALM 406 (604)
Q Consensus 328 P~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~-P~~sp~~Iks~L~ 406 (604)
|+. +...||||+|||.+++++++... +.|..++|||||||+|||++|||+|++ |.+++.+||++|+
T Consensus 196 ~~~--~~~~kpdv~ApG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~ 262 (312)
T cd07489 196 PTN--ELYLKPDVAAPGGNILSTYPLAG-----------GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLA 262 (312)
T ss_pred CCC--CCCcCccEEcCCCCEEEeeeCCC-----------CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 998 57899999999999999987642 368999999999999999999999999 9999999999999
Q ss_pred hccccCCCCCCccccCCCCCCCCCCCCCCcccCccccCCCCc
Q 045236 407 TTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALNPGL 448 (604)
Q Consensus 407 ~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A~~~gl 448 (604)
+||......+..... ..+++...+|+|+||+.+|++..-
T Consensus 263 ~ta~~~~~~~~~~~~---~~~~~~~~~G~G~vn~~~a~~~~~ 301 (312)
T cd07489 263 STAKPLPWSDGTSAL---PDLAPVAQQGAGLVNAYKALYATT 301 (312)
T ss_pred HhCccccccCCCccc---cCCCCHhhcCcceeeHHHHhcCCc
Confidence 999987543221110 114667899999999999999543
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=350.89 Aligned_cols=338 Identities=25% Similarity=0.257 Sum_probs=199.2
Q ss_pred CCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-----------CCHHHHHHHHHHHHHC
Q 045236 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-----------CFDSDILAAMDQAIAD 108 (604)
Q Consensus 40 sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-----------~~~~dil~aid~A~~~ 108 (604)
..+|.+||||||||||||+..++ ..+.||||+|+|+++|++...+ +..+++++||+|+++.
T Consensus 73 ~~~D~~GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~ 144 (455)
T cd07478 73 PSRDENGHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDK 144 (455)
T ss_pred cCCCCCCchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHH
Confidence 35689999999999999997532 2358999999999999998765 4678999999999874
Q ss_pred -----CCcEEEEcccCCCCCCCCcccHHHHHHHhhhcC-CcEEEEcCCCCCCCCCCcccC-----CCc--eEeeccCCCC
Q 045236 109 -----GVDVISLSVGASGYAPQYDQDSIAIGSFGAAQH-GVVVSCSAGNSGPGPFTATNI-----APW--ILTVGASTID 175 (604)
Q Consensus 109 -----gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~~~~~~-----ap~--vitVgAst~d 175 (604)
.++|||||||... +.+...+.++.++..+.++ |++||+||||+|....+.... ..- -+.|+. .+
T Consensus 145 a~~~~~p~VInlSlG~~~-g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~--~~ 221 (455)
T cd07478 145 ALELNKPLVINISLGTNF-GSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGE--GE 221 (455)
T ss_pred HHHhCCCeEEEEccCcCC-CCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECC--CC
Confidence 4679999999874 4455667888888887765 999999999999754433221 000 122332 11
Q ss_pred CccceEEEcCCCcEEEeeeeccCCC-C------C--CceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhH
Q 045236 176 REFPADAILGDGRIFGGVSLYAGES-L------P--DFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEK 246 (604)
Q Consensus 176 ~~~~~~~~~~~~~~~~g~~~~~~~~-~------~--~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~ 246 (604)
..+.-.++......+.-.-+.|.-. . . ...+.+.+... ..|-.. ..+....|.-.+.-+
T Consensus 222 ~~~~~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t---~i~v~y-~~~~~~~g~~~i~i~-------- 289 (455)
T cd07478 222 KGFNLEIWGDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFEGT---TVYVYY-YLPEPYTGDQLIFIR-------- 289 (455)
T ss_pred cceEEEEecCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEECCe---EEEEEE-cCCCCCCCCeEEEEE--------
Confidence 2222222222211111111111000 0 0 00011111100 001000 001111111111111
Q ss_pred HHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeee------ecCCCCCCCcc
Q 045236 247 GAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGT------VISPSPPAPKV 320 (604)
Q Consensus 247 ~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~------~~~~~~~~~~~ 320 (604)
..+ ...|---+.+..... .......|+|.-.+...+..++ +. ++..+++.+.+ +-.++...+.+
T Consensus 290 ~~~-~~~GiW~i~~~~~~~---~~g~~~~Wlp~~~~~~~~t~f~----~~--~~~~tit~Pa~~~~vitVga~~~~~~~~ 359 (455)
T cd07478 290 FKN-IKPGIWKIRLTGVSI---TDGRFDAWLPSRGLLSENTRFL----EP--DPYTTLTIPGTARSVITVGAYNQNNNSI 359 (455)
T ss_pred ccC-CCccceEEEEEeccC---CCceEEEEecCcCcCCCCCEee----cC--CCCceEecCCCCCCcEEEEEEeCCCCcc
Confidence 001 011111111111110 0001123455433332222222 11 12223333221 11222214568
Q ss_pred ccccCCCCCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhC------C
Q 045236 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAY------P 394 (604)
Q Consensus 321 a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~------P 394 (604)
+.||||||+. ++++||||+|||++|+++++. +.|..++|||||||||||++|||+|.+ |
T Consensus 360 ~~~Ss~G~~~--~~~~kpdi~APG~~i~s~~~~-------------~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p 424 (455)
T cd07478 360 AIFSGRGPTR--DGRIKPDIAAPGVNILTASPG-------------GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDP 424 (455)
T ss_pred cCccCCCcCC--CCCcCceEEecCCCEEEeecC-------------CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCC
Confidence 9999999998 789999999999999999986 589999999999999999999999965 5
Q ss_pred CCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCCCCc
Q 045236 395 DWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAG 436 (604)
Q Consensus 395 ~~sp~~Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G 436 (604)
.|++++||++|++||+++. +..+++.+||||
T Consensus 425 ~~~~~~ik~~L~~tA~~~~-----------~~~~pn~~~GyG 455 (455)
T cd07478 425 YLYGEKIKTYLIRGARRRP-----------GDEYPNPEWGYG 455 (455)
T ss_pred CCCHHHHHHHHHHhCccCC-----------CCCCCCCCCCCC
Confidence 6799999999999999875 235678899998
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=328.73 Aligned_cols=202 Identities=30% Similarity=0.402 Sum_probs=160.4
Q ss_pred CCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCCCCHHHHHHHHHHHHHCCCcEEEEccc
Q 045236 39 KSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVG 118 (604)
Q Consensus 39 ~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~dil~aid~A~~~gvdVIn~SlG 118 (604)
..|.|..||||||||||+|...+. .| +.||||+|+|+.+|++........++++||++|++.|++|||||||
T Consensus 79 ~~~~~~~gHGT~VAGiIaa~~~n~---~g-----~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN~S~G 150 (291)
T cd07483 79 NGPISDADHGTHVAGIIAAVRDNG---IG-----IDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVINMSFG 150 (291)
T ss_pred CCCCCCCCcHHHHHHHHhCcCCCC---Cc-----eEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEEeCCC
Confidence 446688999999999999986322 22 4899999999999998765567788999999999999999999999
Q ss_pred CCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCc---c--------cCCCceEeeccCCCCCccceEEEcCCC
Q 045236 119 ASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTA---T--------NIAPWILTVGASTIDREFPADAILGDG 187 (604)
Q Consensus 119 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~---~--------~~ap~vitVgAst~d~~~~~~~~~~~~ 187 (604)
.. ... ....+..++.++.++|+++|+||||+|...... + ...+.+|+||+....
T Consensus 151 ~~--~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~------------ 215 (291)
T cd07483 151 KS--FSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK------------ 215 (291)
T ss_pred CC--CCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc------------
Confidence 76 222 235677778888999999999999998543211 1 122445555542110
Q ss_pred cEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCC
Q 045236 188 RIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESG 267 (604)
Q Consensus 188 ~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~ 267 (604)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcE
Q 045236 268 EELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNI 347 (604)
Q Consensus 268 ~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I 347 (604)
.. ...++.||++|+. +|||.|||.+|
T Consensus 216 ----------------------------------------------~~-~~~~~~~Sn~G~~-------~vdi~APG~~i 241 (291)
T cd07483 216 ----------------------------------------------YE-NNLVANFSNYGKK-------NVDVFAPGERI 241 (291)
T ss_pred ----------------------------------------------CC-cccccccCCCCCC-------ceEEEeCCCCe
Confidence 00 2346789999974 46999999999
Q ss_pred EecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 045236 348 LAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAY 410 (604)
Q Consensus 348 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~ 410 (604)
+++.+. +.|..++|||||||||||++|||+|++|+|++.|||++|++||+
T Consensus 242 ~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 242 YSTTPD-------------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred EeccCc-------------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 999775 57999999999999999999999999999999999999999984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=321.72 Aligned_cols=204 Identities=30% Similarity=0.339 Sum_probs=172.8
Q ss_pred CCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC--CCHHHHHHHHHHHHHCCCcEEEEcc
Q 045236 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG--CFDSDILAAMDQAIADGVDVISLSV 117 (604)
Q Consensus 40 sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~dil~aid~A~~~gvdVIn~Sl 117 (604)
+..|..||||||||||+|+... .+.||||+|+|+.+|++...+ +...++++||++|++.|+|||||||
T Consensus 45 ~~~~~~gHGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~ 114 (267)
T cd07476 45 QDGGASAHGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISG 114 (267)
T ss_pred CCCCCCCcHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecC
Confidence 4567899999999999987521 248999999999999987654 4467899999999999999999999
Q ss_pred cCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCcccCCCceEeeccCCCCCccceEEEcCCCcEEEeeeecc
Q 045236 118 GASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPADAILGDGRIFGGVSLYA 197 (604)
Q Consensus 118 G~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~~ 197 (604)
|... ........+..++.++.++|++||+||||+|......+...+++|+|||...
T Consensus 115 G~~~-~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~----------------------- 170 (267)
T cd07476 115 GRLT-QTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD----------------------- 170 (267)
T ss_pred CcCC-CCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC-----------------------
Confidence 9763 2233456778888889999999999999999877777888899999997421
Q ss_pred CCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcccccccccc
Q 045236 198 GESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADSHLI 277 (604)
Q Consensus 198 ~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~i 277 (604)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEecccCCCCC
Q 045236 278 PATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGP 357 (604)
Q Consensus 278 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~ 357 (604)
.+.++.||++|+.. .||||+|||.+|+++.+.
T Consensus 171 ---------------------------------------~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~---- 202 (267)
T cd07476 171 ---------------------------------------DGLPLKFSNWGADY-----RKKGILAPGENILGAALG---- 202 (267)
T ss_pred ---------------------------------------CCCeeeecCCCCCC-----CCceEEecCCCceeecCC----
Confidence 23446799999764 388999999999998876
Q ss_pred CCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCC----CCHHHHHHHHHhccccCCC
Q 045236 358 TDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPD----WSPAAIKSALMTTAYNLDN 414 (604)
Q Consensus 358 ~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~----~sp~~Iks~L~~TA~~~~~ 414 (604)
+.|..++|||||||||||++|||++++|. ++|++||++|++||+++..
T Consensus 203 ---------~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 203 ---------GEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred ---------CCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 57999999999999999999999999887 9999999999999998854
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=320.92 Aligned_cols=203 Identities=36% Similarity=0.446 Sum_probs=172.1
Q ss_pred CCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCCCCHHHHHHHHHHHHH----------
Q 045236 38 SKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIA---------- 107 (604)
Q Consensus 38 ~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~dil~aid~A~~---------- 107 (604)
...|.|..||||||||||+|.... +...||||+|+|+.+|++...++...+++++++++++
T Consensus 45 ~~~~~d~~~HGT~vagii~g~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 115 (264)
T cd07481 45 TPLPYDDNGHGTHTMGTMVGNDGD---------GQQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPAD 115 (264)
T ss_pred CCCCCCCCCchhhhhhheeecCCC---------CCceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccc
Confidence 456788999999999999987532 2238999999999999998877888899999999975
Q ss_pred --CCCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCC---cccCCCceEeeccCCCCCccceEE
Q 045236 108 --DGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFT---ATNIAPWILTVGASTIDREFPADA 182 (604)
Q Consensus 108 --~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~ap~vitVgAst~d~~~~~~~ 182 (604)
.|++|||||||... . ....+..++..+.++|++||+||||+|..... .+...+++|+||+.+.
T Consensus 116 ~~~~~~Iin~S~G~~~--~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~-------- 183 (264)
T cd07481 116 PDLAPDVINNSWGGPS--G--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR-------- 183 (264)
T ss_pred cccCCeEEEeCCCcCC--C--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC--------
Confidence 78999999999883 2 34556666777788999999999999865432 4567788888887321
Q ss_pred EcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEc
Q 045236 183 ILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILAN 262 (604)
Q Consensus 183 ~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~ 262 (604)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEe
Q 045236 263 TDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIA 342 (604)
Q Consensus 263 ~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~A 342 (604)
.+.++.||++||.. .+++||||+|
T Consensus 184 ------------------------------------------------------~~~~~~~S~~g~~~--~~~~~~dv~A 207 (264)
T cd07481 184 ------------------------------------------------------NDVLADFSSRGPST--YGRIKPDISA 207 (264)
T ss_pred ------------------------------------------------------CCCCccccCCCCCC--CCCcCceEEE
Confidence 44567899999998 5899999999
Q ss_pred CCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCC--CCHHHHHHHHHhccc
Q 045236 343 PGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPD--WSPAAIKSALMTTAY 410 (604)
Q Consensus 343 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~--~sp~~Iks~L~~TA~ 410 (604)
||.+|+++++. +.|..++|||||||+|||++|||+|++|+ +++.|||++|++||+
T Consensus 208 pG~~i~s~~~~-------------~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 208 PGVNIRSAVPG-------------GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred CCCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 99999999876 57899999999999999999999999999 999999999999985
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=326.10 Aligned_cols=230 Identities=29% Similarity=0.306 Sum_probs=167.5
Q ss_pred CCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-----CCHHHHHHHHHHHHHCC---CcE
Q 045236 41 PRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-----CFDSDILAAMDQAIADG---VDV 112 (604)
Q Consensus 41 p~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-----~~~~dil~aid~A~~~g---vdV 112 (604)
+.|..||||||||||++.... .....|+||+|+|+.+|++...+ ....++++||++|++.+ ++|
T Consensus 34 ~~d~~gHGT~vAgiia~~~~~--------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~V 105 (291)
T cd04847 34 TADDLGHGTAVAGLALYGDLT--------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRV 105 (291)
T ss_pred cCCCCCChHHHHHHHHcCccc--------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeE
Confidence 679999999999999976532 12247999999999999998764 45677899999999853 599
Q ss_pred EEEcccCCCCCCCCcc--cHHHHHHHh-hhcCCcEEEEcCCCCCCCCCC------------cccCCCceEeeccCCCCCc
Q 045236 113 ISLSVGASGYAPQYDQ--DSIAIGSFG-AAQHGVVVSCSAGNSGPGPFT------------ATNIAPWILTVGASTIDRE 177 (604)
Q Consensus 113 In~SlG~~~~~~~~~~--~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~------------~~~~ap~vitVgAst~d~~ 177 (604)
||||||... ..... ..+..++.+ +.++|++||+||||+|..... .+..++++|+|||.+.+..
T Consensus 106 iN~SlG~~~--~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~ 183 (291)
T cd04847 106 FNLSLGSPL--PIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDD 183 (291)
T ss_pred EEEecCCCC--CccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCcc
Confidence 999999873 22211 244444443 458999999999999976543 2446789999998654332
Q ss_pred cceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceE
Q 045236 178 FPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLG 257 (604)
Q Consensus 178 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g 257 (604)
.......
T Consensus 184 ~~~~s~~------------------------------------------------------------------------- 190 (291)
T cd04847 184 ITDRARY------------------------------------------------------------------------- 190 (291)
T ss_pred CCCcccc-------------------------------------------------------------------------
Confidence 1000000
Q ss_pred EEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccC
Q 045236 258 MILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILK 337 (604)
Q Consensus 258 ~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lK 337 (604)
+... ....+.||||||.. ++.+|
T Consensus 191 ------------------------------------------------------~~~~-~~~~~~fs~~Gp~~--~~~~K 213 (291)
T cd04847 191 ------------------------------------------------------SAVG-PAPAGATTSSGPGS--PGPIK 213 (291)
T ss_pred ------------------------------------------------------cccc-cccCCCccccCCCC--CCCcC
Confidence 0000 11223499999998 79999
Q ss_pred CceEeCCCcEEecccCCCCCC-----CCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 045236 338 PDVIAPGVNILAAWTGSTGPT-----DLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAY 410 (604)
Q Consensus 338 PDI~APG~~I~sa~~~~~~~~-----~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~ 410 (604)
|||+|||++|++..+...... ..........|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 214 PDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 214 PDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 999999999988654311000 0001122368999999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=314.49 Aligned_cols=221 Identities=37% Similarity=0.540 Sum_probs=181.1
Q ss_pred CCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-CCHHHHHHHHHHHHHC----CCcE
Q 045236 38 SKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDILAAMDQAIAD----GVDV 112 (604)
Q Consensus 38 ~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~aid~A~~~----gvdV 112 (604)
...+.|..||||||||||+|+.... .+.+.|+||+|+|+.+|+++..+ ....++++||+++++. +++|
T Consensus 37 ~~~~~d~~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~I 109 (264)
T cd07487 37 RTTPYDDNGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRV 109 (264)
T ss_pred CCCCCCCCCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceE
Confidence 4457788999999999999986431 23359999999999999998766 5778899999999998 9999
Q ss_pred EEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCC--CcccCCCceEeeccCCCCCccceEEEcCCCcEE
Q 045236 113 ISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPF--TATNIAPWILTVGASTIDREFPADAILGDGRIF 190 (604)
Q Consensus 113 In~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~--~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~ 190 (604)
||||||... ......+.+..++.++.++|++||+||||+|.... ..+...+++|+||+...+..
T Consensus 110 in~S~g~~~-~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------- 175 (264)
T cd07487 110 VNLSLGAPP-DPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP------------- 175 (264)
T ss_pred EEeccCCCC-CCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC-------------
Confidence 999999883 22446678888899999999999999999997765 45567889999998532210
Q ss_pred EeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccc
Q 045236 191 GGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEEL 270 (604)
Q Consensus 191 ~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~ 270 (604)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEec
Q 045236 271 IADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAA 350 (604)
Q Consensus 271 ~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa 350 (604)
. ...++.||++||+. ++++||||+|||.+|+++
T Consensus 176 --------------------------------------------~-~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~ 208 (264)
T cd07487 176 --------------------------------------------H-DDGISYFSSRGPTG--DGRIKPDVVAPGENIVSC 208 (264)
T ss_pred --------------------------------------------C-CccccccccCCCCC--CCCcCCCEEccccceEec
Confidence 0 12357899999998 789999999999999998
Q ss_pred ccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 045236 351 WTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAY 410 (604)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~ 410 (604)
.+.... ........|..++|||||||+|||++|||+|++|.|++.+||++|++||+
T Consensus 209 ~~~~~~----~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 209 RSPGGN----PGAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred cccccc----cCCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 664311 01122367899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=309.93 Aligned_cols=235 Identities=33% Similarity=0.409 Sum_probs=176.4
Q ss_pred CCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecC
Q 045236 11 NKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWS 90 (604)
Q Consensus 11 n~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~ 90 (604)
++|++..++|.... ..+...+.|..||||||||||+|+.. ++...|+||+|+|+.+|++..
T Consensus 19 ~~~~~~~~~~~~~~----------~~~~~~~~d~~~HGT~vAgiia~~~~---------~~~~~GvAp~a~i~~~~v~~~ 79 (254)
T cd07490 19 AGRVAQWADFDENR----------RISATEVFDAGGHGTHVSGTIGGGGA---------KGVYIGVAPEADLLHGKVLDD 79 (254)
T ss_pred hcccCCceeccCCC----------CCCCCCCCCCCCcHHHHHHHHhcCCC---------CCCEEEECCCCEEEEEEEecC
Confidence 56676666665421 12233466889999999999999864 223589999999999999988
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCcccHHHHHHHhhhc-CCcEEEEcCCCCCCCCCCcccCCCceEee
Q 045236 91 PGCFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQ-HGVVVSCSAGNSGPGPFTATNIAPWILTV 169 (604)
Q Consensus 91 ~g~~~~dil~aid~A~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~ap~vitV 169 (604)
.++..+++++||+++++.+++|||||||... .. .+.+..++....+ +|++||+||||+|......+...+++|+|
T Consensus 80 ~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~--~~--~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~V 155 (254)
T cd07490 80 GGGSLSQIIAGMEWAVEKDADVVSMSLGGTY--YS--EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSV 155 (254)
T ss_pred CCCcHHHHHHHHHHHHhCCCCEEEECCCcCC--CC--CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEE
Confidence 7788889999999999999999999999882 22 4566655555553 69999999999998877777788999999
Q ss_pred ccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHH
Q 045236 170 GASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAA 249 (604)
Q Consensus 170 gAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~ 249 (604)
||.+.+.........
T Consensus 156 ga~~~~~~~~~~s~~----------------------------------------------------------------- 170 (254)
T cd07490 156 GAVDRDDEDAWFSSF----------------------------------------------------------------- 170 (254)
T ss_pred ecccccCCccCccCC-----------------------------------------------------------------
Confidence 996543211000000
Q ss_pred HHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCC
Q 045236 250 VKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPN 329 (604)
Q Consensus 250 ~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~ 329 (604)
........+++|.
T Consensus 171 -------------------------------------------------------------------g~~~~~~~~~~~~ 183 (254)
T cd07490 171 -------------------------------------------------------------------GSSGASLVSAPDS 183 (254)
T ss_pred -------------------------------------------------------------------cccccccccCCCC
Confidence 0011222333443
Q ss_pred CCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 045236 330 SLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTA 409 (604)
Q Consensus 330 ~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA 409 (604)
.. ....||||.|||.+|+++.... .....|..++|||||||+|||++|||+|++|+|++.+||++|++||
T Consensus 184 ~~-~~~~~~d~~apG~~i~~~~~~~---------~~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA 253 (254)
T cd07490 184 PP-DEYTKPDVAAPGVDVYSARQGA---------NGDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETA 253 (254)
T ss_pred Cc-cCCcCceEEeccCCeEccccCC---------CCCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhc
Confidence 32 4578999999999999975321 1126799999999999999999999999999999999999999998
Q ss_pred c
Q 045236 410 Y 410 (604)
Q Consensus 410 ~ 410 (604)
+
T Consensus 254 ~ 254 (254)
T cd07490 254 Y 254 (254)
T ss_pred C
Confidence 4
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=306.90 Aligned_cols=206 Identities=32% Similarity=0.434 Sum_probs=167.0
Q ss_pred CCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCCCCHHHHHHHHHHHH----------HCCC
Q 045236 41 PRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAI----------ADGV 110 (604)
Q Consensus 41 p~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~dil~aid~A~----------~~gv 110 (604)
.+|..||||||||||+|...+ ..| +.||||+|+|+.+|+++..+...+++++|++||+ .+++
T Consensus 67 ~~~~~~HGT~vAgiiaa~~~~---~~~-----~~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~ 138 (285)
T cd07496 67 VSPSSWHGTHVAGTIAAVTNN---GVG-----VAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPA 138 (285)
T ss_pred CCCCCCCHHHHHHHHhCcCCC---CCC-----ceeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCCC
Confidence 456789999999999998642 222 4899999999999999887778889999999998 4578
Q ss_pred cEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCC-CCcccCCCceEeeccCCCCCccceEEEcCCCcE
Q 045236 111 DVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGP-FTATNIAPWILTVGASTIDREFPADAILGDGRI 189 (604)
Q Consensus 111 dVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~ 189 (604)
+|||||||... .. ...+..++..+.++|++||+||||+|... ...+...+++|+||+.+.
T Consensus 139 ~Iin~S~G~~~--~~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~--------------- 199 (285)
T cd07496 139 KVINLSLGGDG--AC--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL--------------- 199 (285)
T ss_pred eEEEeCCCCCC--CC--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC---------------
Confidence 99999999872 21 45677888888899999999999999775 556677889999997431
Q ss_pred EEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcc
Q 045236 190 FGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEE 269 (604)
Q Consensus 190 ~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~ 269 (604)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEe
Q 045236 270 LIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILA 349 (604)
Q Consensus 270 ~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~s 349 (604)
.+.++.||++||.. ||.|||.+|.+
T Consensus 200 -----------------------------------------------~~~~~~~S~~g~~v--------di~apG~~i~~ 224 (285)
T cd07496 200 -----------------------------------------------RGQRASYSNYGPAV--------DVSAPGGDCAS 224 (285)
T ss_pred -----------------------------------------------CCCcccccCCCCCC--------CEEeCCCCccc
Confidence 34567899999976 99999999998
Q ss_pred cccCCCCCC--CCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 045236 350 AWTGSTGPT--DLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTT 408 (604)
Q Consensus 350 a~~~~~~~~--~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~T 408 (604)
+........ ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 225 DVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred cCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 876532110 00111223578999999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=300.90 Aligned_cols=206 Identities=32% Similarity=0.394 Sum_probs=169.0
Q ss_pred CCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-CCHHHHHHHHHHHHHCCCcEEEEccc
Q 045236 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDILAAMDQAIADGVDVISLSVG 118 (604)
Q Consensus 40 sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~aid~A~~~gvdVIn~SlG 118 (604)
.+.|..||||||||||+|+..+. ..+.|+||+|+|+.+|++...+ +...++.+++++|++.+++|||||||
T Consensus 35 ~~~~~~~HGT~vAgiiag~~~~~--------~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g 106 (242)
T cd07498 35 PTSDIDGHGTACAGVAAAVGNNG--------LGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWG 106 (242)
T ss_pred CCCCCCCCHHHHHHHHHhccCCC--------ceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccC
Confidence 45788999999999999986321 2358999999999999998764 67788999999999999999999999
Q ss_pred CCCCCCCCcccHHHHHHHhhhc-CCcEEEEcCCCCCCCCCCcccCCCceEeeccCCCCCccceEEEcCCCcEEEeeeecc
Q 045236 119 ASGYAPQYDQDSIAIGSFGAAQ-HGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPADAILGDGRIFGGVSLYA 197 (604)
Q Consensus 119 ~~~~~~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~~ 197 (604)
... ........+..++.++.+ +|+++|+||||+|......+...+++|+||+.+.
T Consensus 107 ~~~-~~~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~----------------------- 162 (242)
T cd07498 107 GSD-STESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDS----------------------- 162 (242)
T ss_pred CCC-CCchHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCC-----------------------
Confidence 873 223345667777777888 9999999999999877667778999999998431
Q ss_pred CCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcccccccccc
Q 045236 198 GESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADSHLI 277 (604)
Q Consensus 198 ~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~i 277 (604)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEecccCCCCC
Q 045236 278 PATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGP 357 (604)
Q Consensus 278 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~ 357 (604)
.+.++.||++||.. |+.|||.+++.........
T Consensus 163 ---------------------------------------~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~ 195 (242)
T cd07498 163 ---------------------------------------NDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSA 195 (242)
T ss_pred ---------------------------------------CCCccCcCCCCCCe--------EEEeCcCCcccCCcccccc
Confidence 33457899999976 9999999998875442110
Q ss_pred CCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 045236 358 TDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTT 408 (604)
Q Consensus 358 ~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~T 408 (604)
.+.....|..++|||||||+|||++|||+|++|+|++.|||++|++|
T Consensus 196 ----~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 196 ----GDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred ----ccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 11223678999999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=314.59 Aligned_cols=254 Identities=35% Similarity=0.490 Sum_probs=193.3
Q ss_pred CceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCC
Q 045236 12 KKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSP 91 (604)
Q Consensus 12 ~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~ 91 (604)
.|+.+.+.|.+.. .......|..||||||||||+|.. . .+. ....|+||+|+|+.+|++...
T Consensus 24 ~~~~~~~~~~~~~-----------~~~~~~~~~~~HGT~va~ii~~~~-~-~~~-----~~~~Gva~~a~l~~~~i~~~~ 85 (282)
T PF00082_consen 24 SKVPGGYNFVDGN-----------PNPSPSDDDNGHGTHVAGIIAGNG-G-NNG-----PGINGVAPNAKLYSYKIFDNS 85 (282)
T ss_dssp EEEEEEEETTTTB-----------STTTSSSTSSSHHHHHHHHHHHTT-S-SSS-----SSETCSSTTSEEEEEECSSTT
T ss_pred ccccceeeccCCC-----------CCcCccccCCCccchhhhhccccc-c-ccc-----ccccccccccccccccccccc
Confidence 3444567776642 123446688999999999999997 2 222 224899999999999998877
Q ss_pred CCCHHHHHHHHHHHH-HCCCcEEEEcccCCC-CCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCC---cccCCCce
Q 045236 92 GCFDSDILAAMDQAI-ADGVDVISLSVGASG-YAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFT---ATNIAPWI 166 (604)
Q Consensus 92 g~~~~dil~aid~A~-~~gvdVIn~SlG~~~-~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~ap~v 166 (604)
+....+++++|++++ +++++|||+|||... .......+.+..+...+.++|+++|+||||+|..... .+...+++
T Consensus 86 ~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~v 165 (282)
T PF00082_consen 86 GGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNV 165 (282)
T ss_dssp SEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTS
T ss_pred ccccccccchhhhhhhccCCccccccccccccccccccccccccccccccccCcceeecccccccccccccccccccccc
Confidence 777888999999999 899999999999831 0112233445666667889999999999999876543 45556788
Q ss_pred EeeccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhH
Q 045236 167 LTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEK 246 (604)
Q Consensus 167 itVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~ 246 (604)
|+||+.+.
T Consensus 166 i~Vg~~~~------------------------------------------------------------------------ 173 (282)
T PF00082_consen 166 ITVGAVDN------------------------------------------------------------------------ 173 (282)
T ss_dssp EEEEEEET------------------------------------------------------------------------
T ss_pred cccccccc------------------------------------------------------------------------
Confidence 88887321
Q ss_pred HHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCC
Q 045236 247 GAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSR 326 (604)
Q Consensus 247 ~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~ 326 (604)
.+.++.||++
T Consensus 174 ----------------------------------------------------------------------~~~~~~~s~~ 183 (282)
T PF00082_consen 174 ----------------------------------------------------------------------NGQPASYSNY 183 (282)
T ss_dssp ----------------------------------------------------------------------TSSBSTTSSB
T ss_pred ----------------------------------------------------------------------cccccccccc
Confidence 3345789999
Q ss_pred CCCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 045236 327 GPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALM 406 (604)
Q Consensus 327 GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~ 406 (604)
|+... ++++||||+|||.+|+++++.... ..|..++|||||||+|||++|||+|++|+|++.+||.+|+
T Consensus 184 g~~~~-~~~~~~di~a~G~~i~~~~~~~~~----------~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~ 252 (282)
T PF00082_consen 184 GGPSD-DGRIKPDIAAPGGNILSAVPGSDR----------GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLI 252 (282)
T ss_dssp STTET-TCTTCEEEEEECSSEEEEETTTES----------EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred ccccc-cccccccccccccccccccccccc----------ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 75442 689999999999999988876310 3578899999999999999999999999999999999999
Q ss_pred hccccCCCCCCccccCCCCCCCCCCCCCCcccCccccCC
Q 045236 407 TTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALN 445 (604)
Q Consensus 407 ~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A~~ 445 (604)
+||.+....+ .......||||+||+.+|++
T Consensus 253 ~ta~~~~~~~---------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 253 NTADDLGSTN---------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHSBESSETT---------SSSSHHHHTTSBE-HHHHHH
T ss_pred HhCcccCcCC---------CCCCCCCccCChhCHHHHhC
Confidence 9999886221 12344678999999999874
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=304.24 Aligned_cols=210 Identities=29% Similarity=0.338 Sum_probs=169.7
Q ss_pred CCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-CCHHHHHHHHHHHHHCCCcEEEEc
Q 045236 38 SKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDILAAMDQAIADGVDVISLS 116 (604)
Q Consensus 38 ~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~aid~A~~~gvdVIn~S 116 (604)
..+..|..||||||||||+|+.......-|++ .+.|+||+|+|+.+|++...+ +...+++++|++|++.|++|||||
T Consensus 54 ~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S 131 (273)
T cd07485 54 DNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNS 131 (273)
T ss_pred CCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEec
Confidence 34456789999999999999864322211221 235799999999999998754 677789999999999999999999
Q ss_pred ccCCCCCCCCcccHHHHHHHhhhcC-------CcEEEEcCCCCCCCCCCcccCCCceEeeccCCCCCccceEEEcCCCcE
Q 045236 117 VGASGYAPQYDQDSIAIGSFGAAQH-------GVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPADAILGDGRI 189 (604)
Q Consensus 117 lG~~~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~ 189 (604)
||.. ........+..++..+.++ |++||+||||+|......+...+++|+|++.+.
T Consensus 132 ~g~~--~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~--------------- 194 (273)
T cd07485 132 WGGT--GGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT--------------- 194 (273)
T ss_pred CCCC--CccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC---------------
Confidence 9987 3333456677777778777 999999999999877666778889999997421
Q ss_pred EEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcc
Q 045236 190 FGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEE 269 (604)
Q Consensus 190 ~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~ 269 (604)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCC-cEE
Q 045236 270 LIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGV-NIL 348 (604)
Q Consensus 270 ~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~-~I~ 348 (604)
.+.++.||++|+.. ||.|||. .|+
T Consensus 195 -----------------------------------------------~~~~~~~S~~g~~~--------~i~apG~~~i~ 219 (273)
T cd07485 195 -----------------------------------------------NDNKASFSNYGRWV--------DIAAPGVGTIL 219 (273)
T ss_pred -----------------------------------------------CCCcCccccCCCce--------EEEeCCCCccc
Confidence 34556899999876 9999999 999
Q ss_pred ecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCC-CCHHHHHHHHHhc
Q 045236 349 AAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPD-WSPAAIKSALMTT 408 (604)
Q Consensus 349 sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~-~sp~~Iks~L~~T 408 (604)
++++.... .....|..++|||||||+|||++|||+|++|. |+|.|||++|++|
T Consensus 220 ~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 220 STVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred cccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 88775311 11257899999999999999999999999999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=300.21 Aligned_cols=212 Identities=33% Similarity=0.411 Sum_probs=179.2
Q ss_pred CCCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeec
Q 045236 10 CNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICW 89 (604)
Q Consensus 10 cn~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~ 89 (604)
++.+++..++|... ..++.|..||||||||||++..... ..+.|+||+|+|+.+|++.
T Consensus 47 ~~~~~~~~~~~~~~--------------~~~~~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~ 104 (260)
T cd07484 47 LKVKFVLGYDFVDN--------------DSDAMDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLD 104 (260)
T ss_pred ccCCcccceeccCC--------------CCCCCCCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEEC
Confidence 46777777777643 1236788999999999999875321 2258999999999999998
Q ss_pred CCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCcccCCCceEe
Q 045236 90 SPG-CFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILT 168 (604)
Q Consensus 90 ~~g-~~~~dil~aid~A~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vit 168 (604)
..+ +...++++||+++++.|++|||+|||.. . ....+..++..+.++|++||+||||+|......++..+++|+
T Consensus 105 ~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~--~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~ 179 (260)
T cd07484 105 ANGSGSLADIANGIRYAADKGAKVINLSLGGG--L---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIA 179 (260)
T ss_pred CCCCcCHHHHHHHHHHHHHCCCeEEEecCCCC--C---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEE
Confidence 755 6778899999999999999999999988 2 346677778888899999999999999887788888999999
Q ss_pred eccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHH
Q 045236 169 VGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGA 248 (604)
Q Consensus 169 VgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~ 248 (604)
||+.+.
T Consensus 180 Vga~~~-------------------------------------------------------------------------- 185 (260)
T cd07484 180 VAATDQ-------------------------------------------------------------------------- 185 (260)
T ss_pred EEeeCC--------------------------------------------------------------------------
Confidence 997431
Q ss_pred HHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCC
Q 045236 249 AVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGP 328 (604)
Q Consensus 249 ~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP 328 (604)
.+..+.||++|+
T Consensus 186 --------------------------------------------------------------------~~~~~~~s~~g~ 197 (260)
T cd07484 186 --------------------------------------------------------------------DDKRASFSNYGK 197 (260)
T ss_pred --------------------------------------------------------------------CCCcCCcCCCCC
Confidence 334567899997
Q ss_pred CCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 045236 329 NSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTT 408 (604)
Q Consensus 329 ~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~T 408 (604)
.. |+.|||..|+++.+. ..|..++|||||||+|||++|||++++| |++.+||++|++|
T Consensus 198 ~~--------~~~apG~~i~~~~~~-------------~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~t 255 (260)
T cd07484 198 WV--------DVSAPGGGILSTTPD-------------GDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKT 255 (260)
T ss_pred Cc--------eEEeCCCCcEeecCC-------------CCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHh
Confidence 65 999999999988765 5789999999999999999999999999 9999999999999
Q ss_pred cccC
Q 045236 409 AYNL 412 (604)
Q Consensus 409 A~~~ 412 (604)
|+++
T Consensus 256 A~~~ 259 (260)
T cd07484 256 ADDI 259 (260)
T ss_pred CccC
Confidence 9875
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=293.04 Aligned_cols=193 Identities=35% Similarity=0.527 Sum_probs=164.7
Q ss_pred CCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-CCHHHHHHHHHHHHHCCCcEEEEcc
Q 045236 39 KSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDILAAMDQAIADGVDVISLSV 117 (604)
Q Consensus 39 ~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~aid~A~~~gvdVIn~Sl 117 (604)
..+.|..+|||||||||++..... .+.|+||+|+|+.+|++...+ ....++++++++|++.|++|||+||
T Consensus 34 ~~~~~~~~HGT~vA~ii~~~~~~~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~ 104 (229)
T cd07477 34 NDYQDGNGHGTHVAGIIAALDNGV---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSL 104 (229)
T ss_pred CCCCCCCCCHHHHHHHHhcccCCC---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECC
Confidence 346688999999999999986322 348999999999999998765 5668899999999999999999999
Q ss_pred cCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCc--ccCCCceEeeccCCCCCccceEEEcCCCcEEEeeee
Q 045236 118 GASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTA--TNIAPWILTVGASTIDREFPADAILGDGRIFGGVSL 195 (604)
Q Consensus 118 G~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~ 195 (604)
|... ....+..++..+.++|+++|+||||++...... +...+++|+||+.+.
T Consensus 105 g~~~-----~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~--------------------- 158 (229)
T cd07477 105 GGPS-----DSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDS--------------------- 158 (229)
T ss_pred ccCC-----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecC---------------------
Confidence 9872 234566677788899999999999999776554 778899999997432
Q ss_pred ccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcccccccc
Q 045236 196 YAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADSH 275 (604)
Q Consensus 196 ~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~ 275 (604)
T Consensus 159 -------------------------------------------------------------------------------- 158 (229)
T cd07477 159 -------------------------------------------------------------------------------- 158 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEecccCCC
Q 045236 276 LIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGST 355 (604)
Q Consensus 276 ~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~ 355 (604)
.+.+..||++|+.. |+.|||.+|+++++.
T Consensus 159 -----------------------------------------~~~~~~~s~~g~~~--------~~~apg~~i~~~~~~-- 187 (229)
T cd07477 159 -----------------------------------------NNNRASFSSTGPEV--------ELAAPGVDILSTYPN-- 187 (229)
T ss_pred -----------------------------------------CCCcCCccCCCCCc--------eEEeCCCCeEEecCC--
Confidence 33446799999865 999999999999876
Q ss_pred CCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 045236 356 GPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTT 408 (604)
Q Consensus 356 ~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~T 408 (604)
..|..++|||||||+|||++|||+|++|.+++.+||++|++|
T Consensus 188 -----------~~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 188 -----------NDYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred -----------CCEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 578999999999999999999999999999999999999986
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=296.29 Aligned_cols=190 Identities=39% Similarity=0.540 Sum_probs=164.2
Q ss_pred CCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-CCHHHHHHHHHHHHHC-----CCcEEE
Q 045236 41 PRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDILAAMDQAIAD-----GVDVIS 114 (604)
Q Consensus 41 p~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~aid~A~~~-----gvdVIn 114 (604)
..|..||||||||||+|+. .||||+|+|+.+|+++..+ ...++++++|+++++. +++|||
T Consensus 59 ~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin 124 (255)
T cd04077 59 DSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVAN 124 (255)
T ss_pred CCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEE
Confidence 5688999999999999874 6999999999999998764 6678899999999987 489999
Q ss_pred EcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCC-CCcccCCCceEeeccCCCCCccceEEEcCCCcEEEee
Q 045236 115 LSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGP-FTATNIAPWILTVGASTIDREFPADAILGDGRIFGGV 193 (604)
Q Consensus 115 ~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~ 193 (604)
+|||.. . ...+..++.++.++|+++|+||||+|... ...+...+++|+||+.+.
T Consensus 125 ~S~g~~--~----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~------------------- 179 (255)
T cd04077 125 MSLGGG--A----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDS------------------- 179 (255)
T ss_pred eCCCCC--C----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCC-------------------
Confidence 999987 2 45677778888999999999999999765 455667899999998431
Q ss_pred eeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcccccc
Q 045236 194 SLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIAD 273 (604)
Q Consensus 194 ~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~ 273 (604)
T Consensus 180 -------------------------------------------------------------------------------- 179 (255)
T cd04077 180 -------------------------------------------------------------------------------- 179 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEecccC
Q 045236 274 SHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTG 353 (604)
Q Consensus 274 ~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~ 353 (604)
.+..+.||++||.. ||+|||.+|+++...
T Consensus 180 -------------------------------------------~~~~~~~S~~g~~~--------~i~apG~~i~~~~~~ 208 (255)
T cd04077 180 -------------------------------------------DDARASFSNYGSCV--------DIFAPGVDILSAWIG 208 (255)
T ss_pred -------------------------------------------CCCccCcccCCCCC--------cEEeCCCCeEecccC
Confidence 33457899999976 999999999998774
Q ss_pred CCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccc
Q 045236 354 STGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYN 411 (604)
Q Consensus 354 ~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~ 411 (604)
.. ..|..++|||||||+|||++|||+|++|+++++|||++|++||++
T Consensus 209 ~~-----------~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 209 SD-----------TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred CC-----------CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 21 578999999999999999999999999999999999999999974
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=303.96 Aligned_cols=207 Identities=27% Similarity=0.339 Sum_probs=152.8
Q ss_pred CCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCCCCHHHHHHHHHHHHHCCCcEEEEcccC
Q 045236 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGA 119 (604)
Q Consensus 40 sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~dil~aid~A~~~gvdVIn~SlG~ 119 (604)
.+.|++|||||||+++ .||||+|+|+.+|++++ ..+++++||+||++.++||||||||.
T Consensus 56 ~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~dVIn~SlG~ 114 (298)
T cd07494 56 PACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPDIISNSWGY 114 (298)
T ss_pred CCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCCEEEeeccc
Confidence 4568899999999864 69999999999999864 45678999999999999999999998
Q ss_pred CCCCCC--------CcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCcccCCCceEeeccCCCCCccceEEEcCCCcEEE
Q 045236 120 SGYAPQ--------YDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPADAILGDGRIFG 191 (604)
Q Consensus 120 ~~~~~~--------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~ 191 (604)
...... .....+..++.+|.++|++||+||||++. .++...|++|+||+++.+..- ..
T Consensus 115 ~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~g---------~~-- 180 (298)
T cd07494 115 DLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDEDG---------AR-- 180 (298)
T ss_pred CCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCCC---------cc--
Confidence 631110 11235777888889999999999999874 468889999999986432210 00
Q ss_pred eeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcccc
Q 045236 192 GVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELI 271 (604)
Q Consensus 192 g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~ 271 (604)
T Consensus 181 -------------------------------------------------------------------------------- 180 (298)
T cd07494 181 -------------------------------------------------------------------------------- 180 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCce-----------
Q 045236 272 ADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDV----------- 340 (604)
Q Consensus 272 ~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI----------- 340 (604)
.. ....+.|+|+ ..+++.|||+
T Consensus 181 ------------------------------------------~~-~~~~~~~~s~----~~~g~~~pd~~~~~g~~~~~~ 213 (298)
T cd07494 181 ------------------------------------------RA-SSYASGFRSK----IYPGRQVPDVCGLVGMLPHAA 213 (298)
T ss_pred ------------------------------------------cc-cccccCcccc----cCCCCccCccccccCcCCccc
Confidence 00 0000111111 1135566666
Q ss_pred -----EeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCC
Q 045236 341 -----IAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLD 413 (604)
Q Consensus 341 -----~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~ 413 (604)
+|||..|.++..... ........|..++|||||||||||++|||+|+||.|++++||.+|+.||+++.
T Consensus 214 ~~~~~~APG~~i~~~~~~~~-----~~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~ 286 (298)
T cd07494 214 YLMLPVPPGSQLDRSCAAFP-----DGTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVT 286 (298)
T ss_pred ccccccCCCcceeccccCCC-----CCCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccC
Confidence 479999876653210 00111267999999999999999999999999999999999999999999774
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=299.62 Aligned_cols=227 Identities=33% Similarity=0.382 Sum_probs=169.5
Q ss_pred CCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC--CCHHHHHHHHHHHHHCCCcEEEEcccCC
Q 045236 43 DTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG--CFDSDILAAMDQAIADGVDVISLSVGAS 120 (604)
Q Consensus 43 D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~dil~aid~A~~~gvdVIn~SlG~~ 120 (604)
|..||||||||||+|+...... ...+.|+||+|+|+.+|++...+ ....++..+++++.+.+++|||||||..
T Consensus 52 d~~~HGT~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~ 126 (293)
T cd04842 52 DVDGHGTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSP 126 (293)
T ss_pred CCCCCcchhheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCC
Confidence 8899999999999998744321 11359999999999999988765 5566788999999999999999999988
Q ss_pred CCCCCCcccHHHHHHHhhh-c-CCcEEEEcCCCCCCCCC---CcccCCCceEeeccCCCCCccceEEEcCCCcEEEeeee
Q 045236 121 GYAPQYDQDSIAIGSFGAA-Q-HGVVVSCSAGNSGPGPF---TATNIAPWILTVGASTIDREFPADAILGDGRIFGGVSL 195 (604)
Q Consensus 121 ~~~~~~~~~~~~~a~~~a~-~-~Gi~vV~AAGN~G~~~~---~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~ 195 (604)
. ... ......++.++. + +|++||+||||+|.... ..+...+++|+|||.+.+......
T Consensus 127 ~--~~~-~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~~-------------- 189 (293)
T cd04842 127 V--NNG-YTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNGE-------------- 189 (293)
T ss_pred C--ccc-cchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccccc--------------
Confidence 3 221 123333333333 3 89999999999997654 566788999999996543321000
Q ss_pred ccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcccccccc
Q 045236 196 YAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADSH 275 (604)
Q Consensus 196 ~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~ 275 (604)
.|..
T Consensus 190 ----------------------~~~~------------------------------------------------------ 193 (293)
T cd04842 190 ----------------------GGLG------------------------------------------------------ 193 (293)
T ss_pred ----------------------cccc------------------------------------------------------
Confidence 0000
Q ss_pred ccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEecccCCC
Q 045236 276 LIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGST 355 (604)
Q Consensus 276 ~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~ 355 (604)
.... ...++.||++||+. ++++||||+|||++|+++.+...
T Consensus 194 ------------------------------------~~~~-~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~ 234 (293)
T cd04842 194 ------------------------------------QSDN-SDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGG 234 (293)
T ss_pred ------------------------------------ccCC-CCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCC
Confidence 0001 55678999999998 68999999999999999975520
Q ss_pred CCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhC-----C---CCCHHHHHHHHHhccc
Q 045236 356 GPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAY-----P---DWSPAAIKSALMTTAY 410 (604)
Q Consensus 356 ~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~-----P---~~sp~~Iks~L~~TA~ 410 (604)
. ........|..++|||||||||||++|||+|++ | .+++.++|++|++||+
T Consensus 235 ~----~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 235 G----IGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred C----CCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 0 011122578999999999999999999999985 4 6777899999999985
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=291.76 Aligned_cols=199 Identities=33% Similarity=0.457 Sum_probs=166.3
Q ss_pred CCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-CCHHHHHHHHHHHHHCCCcEEEE
Q 045236 37 ESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDILAAMDQAIADGVDVISL 115 (604)
Q Consensus 37 ~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~aid~A~~~gvdVIn~ 115 (604)
+..++.|..||||||||||+|+.... ..+.|+||+|+|+.+|++...+ +...+++++|++|++.+++|||+
T Consensus 55 ~~~~~~d~~~HGT~va~ii~~~~~~~--------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~ 126 (259)
T cd07473 55 NDNDPMDDNGHGTHVAGIIGAVGNNG--------IGIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINN 126 (259)
T ss_pred CCCCCCCCCCcHHHHHHHHHCcCCCC--------CceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEe
Confidence 34567889999999999999986432 2248999999999999998766 77889999999999999999999
Q ss_pred cccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCC---CCccc--CCCceEeeccCCCCCccceEEEcCCCcEE
Q 045236 116 SVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGP---FTATN--IAPWILTVGASTIDREFPADAILGDGRIF 190 (604)
Q Consensus 116 SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~---~~~~~--~ap~vitVgAst~d~~~~~~~~~~~~~~~ 190 (604)
|||... . ...+..++.++.++|++||+||||+|... ..++. ..+++|+||+.+.
T Consensus 127 S~G~~~--~---~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~---------------- 185 (259)
T cd07473 127 SWGGGG--P---SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDS---------------- 185 (259)
T ss_pred CCCCCC--C---CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCC----------------
Confidence 999882 2 56777888888999999999999998762 22332 3577888887321
Q ss_pred EeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccc
Q 045236 191 GGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEEL 270 (604)
Q Consensus 191 ~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~ 270 (604)
T Consensus 186 -------------------------------------------------------------------------------- 185 (259)
T cd07473 186 -------------------------------------------------------------------------------- 185 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEec
Q 045236 271 IADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAA 350 (604)
Q Consensus 271 ~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa 350 (604)
.+.++.||++||. +||+.|||.++++.
T Consensus 186 ----------------------------------------------~~~~~~~s~~g~~-------~~~~~apG~~~~~~ 212 (259)
T cd07473 186 ----------------------------------------------NDALASFSNYGKK-------TVDLAAPGVDILST 212 (259)
T ss_pred ----------------------------------------------CCCcCcccCCCCC-------CcEEEeccCCeEec
Confidence 3345679999985 46999999999997
Q ss_pred ccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 045236 351 WTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAY 410 (604)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~ 410 (604)
.+. ..|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 213 ~~~-------------~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 213 SPG-------------GGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred cCC-------------CcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 654 57899999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=297.58 Aligned_cols=106 Identities=31% Similarity=0.325 Sum_probs=85.5
Q ss_pred CCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCCC-CHHHHHHHHHHHHHCCCcEEEEcc
Q 045236 39 KSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGC-FDSDILAAMDQAIADGVDVISLSV 117 (604)
Q Consensus 39 ~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~-~~~dil~aid~A~~~gvdVIn~Sl 117 (604)
+.+.|..||||||||+|+|+.. ..||||+|+|+.+|+++..+. ...++++||++|++++++|||+||
T Consensus 47 ~~~~d~~gHGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~ 114 (294)
T cd07482 47 NDIVDKLGHGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSL 114 (294)
T ss_pred CcCCCCCCcHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCC
Confidence 4567889999999999998742 259999999999999987765 788999999999999999999999
Q ss_pred cCCCCCCC------CcccHHHHHHHhhhcCCcEEEEcCCCCCCCC
Q 045236 118 GASGYAPQ------YDQDSIAIGSFGAAQHGVVVSCSAGNSGPGP 156 (604)
Q Consensus 118 G~~~~~~~------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~ 156 (604)
|....... .....+..++..+.++|++||+||||+|...
T Consensus 115 G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 115 GGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred ccCCCCCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence 98631111 1113466667777899999999999998643
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=293.04 Aligned_cols=205 Identities=21% Similarity=0.182 Sum_probs=148.0
Q ss_pred CCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCCCCHHHHHHHHHHHHH----CCCcEEEEc
Q 045236 41 PRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIA----DGVDVISLS 116 (604)
Q Consensus 41 p~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~dil~aid~A~~----~gvdVIn~S 116 (604)
+.|.+||||||||||+|.. +.+| +.||||+|+|+.+|++. .++++++|++|++ .++.+||||
T Consensus 47 ~~d~~gHGT~VAGiIaa~~----n~~G-----~~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~~v~~in~s 112 (277)
T cd04843 47 DQADSDHGTAVLGIIVAKD----NGIG-----VTGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPGDVILLEMQ 112 (277)
T ss_pred CCCCCCCcchhheeeeeec----CCCc-----eeeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCCCEEEEEcc
Confidence 6788999999999999973 1122 48999999999999975 3456677777776 356778999
Q ss_pred ccCCCCCCC----CcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCcc-------------cCCCceEeeccCCCCCccc
Q 045236 117 VGASGYAPQ----YDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTAT-------------NIAPWILTVGASTIDREFP 179 (604)
Q Consensus 117 lG~~~~~~~----~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~-------------~~ap~vitVgAst~d~~~~ 179 (604)
||....... .....+..++.++.++|+++|+||||++....... ...+++|+|||.+.+
T Consensus 113 ~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~---- 188 (277)
T cd04843 113 TGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSST---- 188 (277)
T ss_pred ccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCC----
Confidence 998621110 12334556777888999999999999986421110 012456666653210
Q ss_pred eEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEE
Q 045236 180 ADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMI 259 (604)
Q Consensus 180 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i 259 (604)
T Consensus 189 -------------------------------------------------------------------------------- 188 (277)
T cd04843 189 -------------------------------------------------------------------------------- 188 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCc
Q 045236 260 LANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPD 339 (604)
Q Consensus 260 ~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPD 339 (604)
. ....+.||++||.. |
T Consensus 189 -------------------------------------------------------~-~~~~~~fSn~G~~v--------d 204 (277)
T cd04843 189 -------------------------------------------------------T-GHTRLAFSNYGSRV--------D 204 (277)
T ss_pred -------------------------------------------------------C-CCccccccCCCCcc--------c
Confidence 0 11268899999976 9
Q ss_pred eEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHH----h-CCCCCHHHHHHHHHhccc
Q 045236 340 VIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRK----A-YPDWSPAAIKSALMTTAY 410 (604)
Q Consensus 340 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~-~P~~sp~~Iks~L~~TA~ 410 (604)
|.|||++|+++.+..... ........|..++|||||||||||++|||++ + +|+|+|+|||++|+.|++
T Consensus 205 i~APG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 205 VYGWGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred eEcCCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 999999999998764211 0111123457899999999999999999975 3 499999999999999974
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=292.15 Aligned_cols=226 Identities=30% Similarity=0.337 Sum_probs=155.4
Q ss_pred CCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-CCHHHHHHHHHHHHHCCCcEEEEcccC
Q 045236 41 PRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDILAAMDQAIADGVDVISLSVGA 119 (604)
Q Consensus 41 p~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~aid~A~~~gvdVIn~SlG~ 119 (604)
+.|.+||||||||||+|+... +...||||+|+|+.+|++...+ ....++++||++|++.|++|||+|||.
T Consensus 42 ~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~ 112 (297)
T cd07480 42 VQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGA 112 (297)
T ss_pred CCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCC
Confidence 578899999999999998643 2247999999999999987654 666779999999999999999999998
Q ss_pred CCC--------CCCCcccHHHHHHHhh---------------hcCCcEEEEcCCCCCCCCCCcc-----cCCCceEeecc
Q 045236 120 SGY--------APQYDQDSIAIGSFGA---------------AQHGVVVSCSAGNSGPGPFTAT-----NIAPWILTVGA 171 (604)
Q Consensus 120 ~~~--------~~~~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~G~~~~~~~-----~~ap~vitVgA 171 (604)
... ........+......+ .++|++||+||||+|....... ...++++.|++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~ 192 (297)
T cd07480 113 DFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAA 192 (297)
T ss_pred CCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEE
Confidence 620 0011112233222333 6789999999999986432211 01122222222
Q ss_pred CCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHH
Q 045236 172 STIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVK 251 (604)
Q Consensus 172 st~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~ 251 (604)
...
T Consensus 193 V~~----------------------------------------------------------------------------- 195 (297)
T cd07480 193 VGA----------------------------------------------------------------------------- 195 (297)
T ss_pred ECC-----------------------------------------------------------------------------
Confidence 100
Q ss_pred hcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCC
Q 045236 252 LAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSL 331 (604)
Q Consensus 252 ~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~ 331 (604)
.+....|+++.+.
T Consensus 196 -----------------------------------------------------------------~~~~~~~~~~~~~-- 208 (297)
T cd07480 196 -----------------------------------------------------------------LGRTGNFSAVANF-- 208 (297)
T ss_pred -----------------------------------------------------------------CCCCCCccccCCC--
Confidence 1111223333322
Q ss_pred CCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccc
Q 045236 332 TAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYN 411 (604)
Q Consensus 332 ~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~ 411 (604)
...||||+|||.+|+++++. +.|..++|||||||+|||++|||+|++|.+++.+++.+|+.....
T Consensus 209 --~~~~~dv~ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~ 273 (297)
T cd07480 209 --SNGEVDIAAPGVDIVSAAPG-------------GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTA 273 (297)
T ss_pred --CCCceEEEeCCCCeEeecCC-------------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhh
Confidence 23578999999999998876 589999999999999999999999999999998888887743221
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCcccCcc
Q 045236 412 LDNSGENIKDLASGEESTPFIHGAGHVDPN 441 (604)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~G~G~id~~ 441 (604)
..... . .......++|+|++++.
T Consensus 274 ~~~~~-~------~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 274 ARTTQ-F------APGLDLPDRGVGLGLAP 296 (297)
T ss_pred cccCC-C------CCCCChhhcCCceeecC
Confidence 10000 0 22345568999999875
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=305.96 Aligned_cols=357 Identities=24% Similarity=0.284 Sum_probs=233.9
Q ss_pred CCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC---CCHHHHHHHHHHHHHCCCcEEEEcccC
Q 045236 43 DTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG---CFDSDILAAMDQAIADGVDVISLSVGA 119 (604)
Q Consensus 43 D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~dil~aid~A~~~gvdVIn~SlG~ 119 (604)
+..-|||||||||+|+..+.. ...|+||+|+|+.+++-+..- -+...+..||..+++..+||||||+|-
T Consensus 308 ~Sg~HGTHVAgIa~anhpe~p--------~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE 379 (1304)
T KOG1114|consen 308 VSGPHGTHVAGIAAANHPETP--------ELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGE 379 (1304)
T ss_pred cCCCCcceehhhhccCCCCCc--------cccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCc
Confidence 346699999999999985432 358999999999999965432 344568899999999999999999998
Q ss_pred CCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCccc---CCCceEeeccCCCCCccceEEEcCCCcEEEeeeec
Q 045236 120 SGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATN---IAPWILTVGASTIDREFPADAILGDGRIFGGVSLY 196 (604)
Q Consensus 120 ~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~---~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~ 196 (604)
.. ..+.....++..-..+-++||++|+||||.||...+++. ....+|.|||-....-.
T Consensus 380 ~a-~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm------------------ 440 (1304)
T KOG1114|consen 380 DA-HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMM------------------ 440 (1304)
T ss_pred cC-CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHH------------------
Confidence 84 445555556555544458899999999999998777654 34468888872110000
Q ss_pred cCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccccccccc
Q 045236 197 AGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADSHL 276 (604)
Q Consensus 197 ~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ 276 (604)
...|.+
T Consensus 441 ------~a~y~~-------------------------------------------------------------------- 446 (1304)
T KOG1114|consen 441 ------QAEYSV-------------------------------------------------------------------- 446 (1304)
T ss_pred ------Hhhhhh--------------------------------------------------------------------
Confidence 000000
Q ss_pred cceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEecccCCCC
Q 045236 277 IPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTG 356 (604)
Q Consensus 277 ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~ 356 (604)
..+....+..+|||||+. ||-+--.|.|||+.|.+--.-..
T Consensus 447 ------------------------------------~e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsVP~~tl- 487 (1304)
T KOG1114|consen 447 ------------------------------------REPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASVPQYTL- 487 (1304)
T ss_pred ------------------------------------hccCCCCccccccCCCCc--CCCcceEEecCCccccCCchhhh-
Confidence 001134578899999999 89999999999999866422211
Q ss_pred CCCCCCCCCCccceEecCcccchhHHHHHHHHHHH----hCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCC
Q 045236 357 PTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRK----AYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFI 432 (604)
Q Consensus 357 ~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~P~~sp~~Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~~~ 432 (604)
..-..|+|||||+|+++|.+|||++ .+-.|||..||.+|++||+++... .+|.
T Consensus 488 ----------q~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i-------------d~fa 544 (1304)
T KOG1114|consen 488 ----------QNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI-------------DSFA 544 (1304)
T ss_pred ----------hhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc-------------chhc
Confidence 4568999999999999999999864 577899999999999999998532 5689
Q ss_pred CCCcccCccccCCCCceeccCchhhhhccccCCCCccceeeeccCCccccccccc--CCCCCCCCCCceeeeccCCCceE
Q 045236 433 HGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDVKRISVFVREPVSSDICTRA--LATPGNLNYPSFSVVFNSNNDVV 510 (604)
Q Consensus 433 ~G~G~id~~~A~~~glv~d~~~~d~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ln~ps~~~~~~~~~~~~ 510 (604)
||.|+|++.+|.+--.-.+.....-+.|+ ..+-.+ +|... ...+.+.+-|+
T Consensus 545 qG~GmlqVdkAyEyL~q~~~~f~~~l~f~-------------~v~VgN--~~srGIyLRep~~~~~p~------------ 597 (1304)
T KOG1114|consen 545 QGQGMLQVDKAYEYLAQSDFSFPNALGFI-------------NVNVGN--SCSRGIYLREPTQVCSPS------------ 597 (1304)
T ss_pred cCcceeehhHHHHHHHHhhhcCCccceeE-------------EEeecc--ccccceEecCCcccCCcc------------
Confidence 99999999999872111111111112220 000000 33221 11111112111
Q ss_pred EEEEEE----eccC---CCCceEEEEEEECCCCcEEEEEcceEEEcccceeEEEEEEEEeeccCCCCCCCceEEEEEEE-
Q 045236 511 KYKRVV----KNVG---SSVDAVYEVKVNAPPNVAVNVWPSKLAFSAEKKALAYEITFSSVGLDGLGVSPQQSGSIEWS- 582 (604)
Q Consensus 511 t~~rtv----~n~~---~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~G~l~~~- 582 (604)
.++.-| .|-- .+ ...|.+.+.....-.|---|+.|.+ .++.+.+.|+++++.. ..+..++.|.=-
T Consensus 598 e~~i~VePiF~~~~e~~ke-ki~Fe~~L~L~st~pwVq~p~~l~l--~~~~R~i~VrVDpt~l----~~G~hy~eV~gyD 670 (1304)
T KOG1114|consen 598 EHTIGVEPIFENGEENEKE-KISFEVQLSLASTQPWVQCPEYLML--ANQGRGINVRVDPTGL----APGVHYTEVLGYD 670 (1304)
T ss_pred ccceeccccccCccccccc-cccceeeEeeecCCcceeCchhhee--ccCCceeEEEECCcCC----CCCcceEEEEEee
Confidence 111111 1100 11 1233333332222223334777766 5788999999999988 578888888764
Q ss_pred ----cCCeEEEEEEEEEe
Q 045236 583 ----DGVHLVRSPIAVRW 596 (604)
Q Consensus 583 ----~~~~~v~~P~~~~~ 596 (604)
+.+..+|+|+-|..
T Consensus 671 ~~~p~~gplFrIPVTVi~ 688 (1304)
T KOG1114|consen 671 TANPSRGPLFRIPVTVIK 688 (1304)
T ss_pred cCCcccCceEEeeeEEEc
Confidence 36899999998754
|
|
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=285.03 Aligned_cols=136 Identities=25% Similarity=0.317 Sum_probs=104.3
Q ss_pred CCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecC
Q 045236 11 NKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWS 90 (604)
Q Consensus 11 n~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~ 90 (604)
++++++.++|...... .....+...|.+||||||||||+ |+||+|+|+.+|++..
T Consensus 22 ~~~i~~~~~~~~~~~~-------~~~~~~~~~d~~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~ 76 (247)
T cd07491 22 QGKIIGGKSFSPYEGD-------GNKVSPYYVSADGHGTAMARMIC------------------RICPSAKLYVIKLEDR 76 (247)
T ss_pred ccccccCCCCCCCCCC-------cccCCCCCCCCCCcHHHHHHHHH------------------HHCCCCeEEEEEeccc
Confidence 4567777888764210 01112223578999999999994 7899999999999976
Q ss_pred CC-------CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCC---cccHHHHHHHhhhcCCcEEEEcCCCCCCCCC-C-
Q 045236 91 PG-------CFDSDILAAMDQAIADGVDVISLSVGASGYAPQY---DQDSIAIGSFGAAQHGVVVSCSAGNSGPGPF-T- 158 (604)
Q Consensus 91 ~g-------~~~~dil~aid~A~~~gvdVIn~SlG~~~~~~~~---~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~- 158 (604)
.+ +...++++||+||+++|+||||||||... ..+ ....+..++.+|.++|++||+||||+|.... .
T Consensus 77 ~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~--~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~ 154 (247)
T cd07491 77 PSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKK--PEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTY 154 (247)
T ss_pred CCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeeccc--ccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcc
Confidence 43 45678999999999999999999999872 211 2567888888999999999999999997654 2
Q ss_pred -cccCCCceEeeccCC
Q 045236 159 -ATNIAPWILTVGAST 173 (604)
Q Consensus 159 -~~~~ap~vitVgAst 173 (604)
.+...+++|+|||.+
T Consensus 155 ~~pa~~~~Vi~VgA~~ 170 (247)
T cd07491 155 PPPAARDRIFRIGAAD 170 (247)
T ss_pred cCcccCCCeEEEEeeC
Confidence 345678999999843
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=277.95 Aligned_cols=184 Identities=26% Similarity=0.303 Sum_probs=151.0
Q ss_pred CCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-CCHHHHHHHHHHHHHCCCcEEEEcc
Q 045236 39 KSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDILAAMDQAIADGVDVISLSV 117 (604)
Q Consensus 39 ~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~aid~A~~~gvdVIn~Sl 117 (604)
..+.|..||||||||||++. +|+++|+.+|++...+ +..+++++||+||++.|++||||||
T Consensus 38 ~~~~d~~gHGT~vAgiia~~------------------~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~ 99 (222)
T cd07492 38 AEGGDKDGHGTACAGIIKKY------------------APEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSL 99 (222)
T ss_pred CCCCCCCCcHHHHHHHHHcc------------------CCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCC
Confidence 44668899999999999753 5999999999998766 7788899999999999999999999
Q ss_pred cCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCcccCCCceEeeccCCCCCccceEEEcCCCcEEEeeeecc
Q 045236 118 GASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPADAILGDGRIFGGVSLYA 197 (604)
Q Consensus 118 G~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~~ 197 (604)
|... . .....+..++.++.++|+++|+||||++.... .+...+.+|+|++...++
T Consensus 100 G~~~--~-~~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~--------------------- 154 (222)
T cd07492 100 GGPG--D-RDFPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD--------------------- 154 (222)
T ss_pred CCCC--C-CcCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC---------------------
Confidence 9872 2 23356677778888899999999999986533 256678888888632110
Q ss_pred CCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcccccccccc
Q 045236 198 GESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADSHLI 277 (604)
Q Consensus 198 ~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~i 277 (604)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEecccCCCCC
Q 045236 278 PATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGP 357 (604)
Q Consensus 278 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~ 357 (604)
.. +.++ .++|+.|||.+|+++++.
T Consensus 155 -----------------------------------------~~---~~~~--------~~~~~~apg~~i~~~~~~---- 178 (222)
T cd07492 155 -----------------------------------------PK---SFWY--------IYVEFSADGVDIIAPAPH---- 178 (222)
T ss_pred -----------------------------------------Cc---cccc--------CCceEEeCCCCeEeecCC----
Confidence 00 1112 245999999999998876
Q ss_pred CCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 045236 358 TDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAY 410 (604)
Q Consensus 358 ~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~ 410 (604)
+.|..++|||||||+|||++|||+|++|+|+++|||++|++||+
T Consensus 179 ---------~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 179 ---------GRYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred ---------CCEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=281.25 Aligned_cols=197 Identities=21% Similarity=0.204 Sum_probs=141.9
Q ss_pred CCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCCCCHHHHHHHHHHH--HHCCCcEEEEcc
Q 045236 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQA--IADGVDVISLSV 117 (604)
Q Consensus 40 sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~dil~aid~A--~~~gvdVIn~Sl 117 (604)
...|.+||||||||||||. .|++|+++|+..++.. ...+.+.++++|+ .+.+++||||||
T Consensus 32 ~~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~---~~~~~~~~~i~~~~~~~~gv~VINmS~ 93 (247)
T cd07488 32 RNNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI---KSNNGQWQECLEAQQNGNNVKIINHSY 93 (247)
T ss_pred CCCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC---CCCCccHHHHHHHHHhcCCceEEEeCC
Confidence 4568999999999999987 3667999998755521 1223456777888 567999999999
Q ss_pred cCCCCCCC-----CcccHHHHHHHhhhcC-CcEEEEcCCCCCCCC-----CCcccCCCceEeeccCCCCCccceEEEcCC
Q 045236 118 GASGYAPQ-----YDQDSIAIGSFGAAQH-GVVVSCSAGNSGPGP-----FTATNIAPWILTVGASTIDREFPADAILGD 186 (604)
Q Consensus 118 G~~~~~~~-----~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~-----~~~~~~ap~vitVgAst~d~~~~~~~~~~~ 186 (604)
|... ... +..+.+..++..+.++ |+++|+||||+|... ...+..++++|+|||.+....
T Consensus 94 G~~~-~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~--------- 163 (247)
T cd07488 94 GEGL-KRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD--------- 163 (247)
T ss_pred ccCC-CCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC---------
Confidence 9873 221 1234566666676665 999999999999743 223456788999998542110
Q ss_pred CcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCC
Q 045236 187 GRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDES 266 (604)
Q Consensus 187 ~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~ 266 (604)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCc
Q 045236 267 GEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVN 346 (604)
Q Consensus 267 ~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~ 346 (604)
....+.||+++-....++..||||+|||++
T Consensus 164 --------------------------------------------------~~~~s~~sn~~~~~~~~~~~~~di~APG~~ 193 (247)
T cd07488 164 --------------------------------------------------RFFASDVSNAGSEINSYGRRKVLIVAPGSN 193 (247)
T ss_pred --------------------------------------------------cceecccccccCCCCCCCCceeEEEEeeee
Confidence 111234555432222367899999999999
Q ss_pred EEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCC------HHHHHHHHHhcc
Q 045236 347 ILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWS------PAAIKSALMTTA 409 (604)
Q Consensus 347 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~s------p~~Iks~L~~TA 409 (604)
|++ +. +.|..++|||||||||||++|||++++|.+. -.++|.+|+.|+
T Consensus 194 i~s--~~-------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~~ 247 (247)
T cd07488 194 YNL--PD-------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSSV 247 (247)
T ss_pred EEC--CC-------------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhccC
Confidence 998 22 4688999999999999999999999987765 446777777653
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=285.06 Aligned_cols=188 Identities=33% Similarity=0.473 Sum_probs=165.3
Q ss_pred CCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-CCHHHHHHHHHHHHHC---------CCc
Q 045236 42 RDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDILAAMDQAIAD---------GVD 111 (604)
Q Consensus 42 ~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~aid~A~~~---------gvd 111 (604)
.|++||||||||+|++.. .|||-+++|+++||+.++| +..+++++++|++++. +..
T Consensus 254 ~D~nGHGTH~AG~I~sKt--------------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~s 319 (501)
T KOG1153|consen 254 EDCNGHGTHVAGLIGSKT--------------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKS 319 (501)
T ss_pred cccCCCcceeeeeeeccc--------------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCe
Confidence 589999999999999885 7999999999999999988 7899999999999976 467
Q ss_pred EEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCC-CCCcccCCCceEeeccCCCCCccceEEEcCCCcEE
Q 045236 112 VISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPG-PFTATNIAPWILTVGASTIDREFPADAILGDGRIF 190 (604)
Q Consensus 112 VIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~-~~~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~ 190 (604)
|.|||+|+. ..-.+..|+++|.+.||++++||||+..+ +.+.+..+..+|||||++.
T Consensus 320 v~NlSlGg~------~S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~---------------- 377 (501)
T KOG1153|consen 320 VANLSLGGF------RSAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTK---------------- 377 (501)
T ss_pred EEEEecCCc------ccHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEeccccc----------------
Confidence 999999988 35678899999999999999999999865 5666778999999999642
Q ss_pred EeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccc
Q 045236 191 GGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEEL 270 (604)
Q Consensus 191 ~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~ 270 (604)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEec
Q 045236 271 IADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAA 350 (604)
Q Consensus 271 ~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa 350 (604)
.+.++.||+||+.. ||-|||++|+|+
T Consensus 378 ----------------------------------------------~D~iA~FSN~G~CV--------diFAPGv~IlSs 403 (501)
T KOG1153|consen 378 ----------------------------------------------NDTIAFFSNWGKCV--------DIFAPGVNILSS 403 (501)
T ss_pred ----------------------------------------------ccchhhhcCcccee--------eeecCchhhhhh
Confidence 56789999999999 999999999999
Q ss_pred ccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCC---------CCHHHHHHHHHhccc
Q 045236 351 WTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPD---------WSPAAIKSALMTTAY 410 (604)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~---------~sp~~Iks~L~~TA~ 410 (604)
|-+.. ....++||||||+|||||++|..+..+|. .||.++|..+..-..
T Consensus 404 ~iGs~-----------~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 404 WIGSN-----------NATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hhcCc-----------cchheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 98853 46789999999999999999999998883 378888877765444
|
|
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=277.13 Aligned_cols=204 Identities=30% Similarity=0.360 Sum_probs=160.6
Q ss_pred CCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC--CCHHHHHHHHHHHHHCCCcEEEEcc
Q 045236 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG--CFDSDILAAMDQAIADGVDVISLSV 117 (604)
Q Consensus 40 sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~dil~aid~A~~~gvdVIn~Sl 117 (604)
...|.++|||||||||+|+... ..+.|+||+|+|+.+|+++..+ +....+.++++++++.+++|||+||
T Consensus 41 ~~~~~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~ 111 (267)
T cd04848 41 SNGDGDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSW 111 (267)
T ss_pred CCCCCCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccC
Confidence 4567899999999999998643 2358999999999999998764 5566788999999999999999999
Q ss_pred cCCCCCCC----------CcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCc---------ccCCCceEeeccCCCCCcc
Q 045236 118 GASGYAPQ----------YDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTA---------TNIAPWILTVGASTIDREF 178 (604)
Q Consensus 118 G~~~~~~~----------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~---------~~~ap~vitVgAst~d~~~ 178 (604)
|....... ...+.+...+..+.++|+++|+||||++...... +...+++|+||+.+.+
T Consensus 112 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~--- 188 (267)
T cd04848 112 GGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPN--- 188 (267)
T ss_pred CCCCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCC---
Confidence 98831110 1445667777788899999999999998654332 2345677888874321
Q ss_pred ceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEE
Q 045236 179 PADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGM 258 (604)
Q Consensus 179 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~ 258 (604)
T Consensus 189 -------------------------------------------------------------------------------- 188 (267)
T cd04848 189 -------------------------------------------------------------------------------- 188 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCcccc--ccCCCCCCCCCCcc
Q 045236 259 ILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAA--FSSRGPNSLTAEIL 336 (604)
Q Consensus 259 i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~--fSS~GP~~~~~~~l 336 (604)
+.... ||++|+.. -
T Consensus 189 -----------------------------------------------------------~~~~~~~~s~~~~~~-----~ 204 (267)
T cd04848 189 -----------------------------------------------------------GTIASYSYSNRCGVA-----A 204 (267)
T ss_pred -----------------------------------------------------------CCcccccccccchhh-----h
Confidence 12223 47777643 2
Q ss_pred CCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 045236 337 KPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAY 410 (604)
Q Consensus 337 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~ 410 (604)
.+++.|||.+|+++.+.. ...|..++|||||||+|||++|||+|++|+|++++||++|++||+
T Consensus 205 ~~~~~apG~~i~~~~~~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 205 NWCLAAPGENIYSTDPDG-----------GNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred hheeecCcCceeecccCC-----------CCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 447999999999987731 157889999999999999999999999999999999999999985
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.7e-32 Score=279.97 Aligned_cols=198 Identities=21% Similarity=0.174 Sum_probs=145.8
Q ss_pred CCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCC
Q 045236 43 DTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGASGY 122 (604)
Q Consensus 43 D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~dil~aid~A~~~gvdVIn~SlG~~~~ 122 (604)
|..||||||||||+|+.... . ...||||+|+|+.+|++... ........++.++.+ .++|||||||....
T Consensus 82 ~~~gHGT~vAgiiag~~~~~---~-----~~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~Vin~S~g~~~~ 151 (297)
T cd04059 82 DDNSHGTRCAGEIAAVGNNG---I-----CGVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YIDIYSNSWGPDDD 151 (297)
T ss_pred cccccCcceeeEEEeecCCC---c-----ccccccccceEeEEEecCCc-cccHHHHHHHhcccC-CceEEECCCCCCCC
Confidence 88999999999999986321 1 23899999999999998764 333445566655544 56999999998731
Q ss_pred CC--CCcccHHHHHHHhhhc-----CCcEEEEcCCCCCCCCCC----cccCCCceEeeccCCCCCccceEEEcCCCcEEE
Q 045236 123 AP--QYDQDSIAIGSFGAAQ-----HGVVVSCSAGNSGPGPFT----ATNIAPWILTVGASTIDREFPADAILGDGRIFG 191 (604)
Q Consensus 123 ~~--~~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~~----~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~ 191 (604)
.. .........++.++.+ +|++||+||||+|..... .....+++|+|||.+.
T Consensus 152 ~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~----------------- 214 (297)
T cd04059 152 GKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTA----------------- 214 (297)
T ss_pred CCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCC-----------------
Confidence 11 1122233344444432 699999999999973222 1235678888887431
Q ss_pred eeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcccc
Q 045236 192 GVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELI 271 (604)
Q Consensus 192 g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~ 271 (604)
T Consensus 215 -------------------------------------------------------------------------------- 214 (297)
T cd04059 215 -------------------------------------------------------------------------------- 214 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCc-----
Q 045236 272 ADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVN----- 346 (604)
Q Consensus 272 ~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~----- 346 (604)
.+.++.||++|+.. ++.|||..
T Consensus 215 ---------------------------------------------~g~~~~~s~~g~~~--------~~~a~g~~~~~~~ 241 (297)
T cd04059 215 ---------------------------------------------NGVRASYSEVGSSV--------LASAPSGGSGNPE 241 (297)
T ss_pred ---------------------------------------------CCCCcCCCCCCCcE--------EEEecCCCCCCCC
Confidence 34557899999887 89999987
Q ss_pred --EEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 045236 347 --ILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAY 410 (604)
Q Consensus 347 --I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~ 410 (604)
|+++.... ....|..++|||||||+|||++|||+|+||+|++.|||.+|++||+
T Consensus 242 ~~i~~~~~~~----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 242 ASIVTTDLGG----------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred CceEeCCCCC----------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 66655431 0146788999999999999999999999999999999999999985
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-27 Score=235.29 Aligned_cols=196 Identities=38% Similarity=0.508 Sum_probs=157.6
Q ss_pred CCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-CCHHHHHHHHHHHH-HCCCcEEEEcc
Q 045236 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDILAAMDQAI-ADGVDVISLSV 117 (604)
Q Consensus 40 sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~aid~A~-~~gvdVIn~Sl 117 (604)
...|..+||||||++|++...... ..|+||+++|+.+|+....+ .....+++++++++ ..+++|||+||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~~---------~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~ 109 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNGG---------GVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSL 109 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCCC---------CEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCC
Confidence 456789999999999999864321 27999999999999987765 56778999999999 89999999999
Q ss_pred cCCCCCCCCcccHHHHHHHhhhcC-CcEEEEcCCCCCCCCC---CcccCCCceEeeccCCCCCccceEEEcCCCcEEEee
Q 045236 118 GASGYAPQYDQDSIAIGSFGAAQH-GVVVSCSAGNSGPGPF---TATNIAPWILTVGASTIDREFPADAILGDGRIFGGV 193 (604)
Q Consensus 118 G~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~---~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~ 193 (604)
|... .. ....+...+.++.++ |+++|+|+||.+.... ..+...+++|+||+.+.+..
T Consensus 110 g~~~--~~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~~---------------- 170 (241)
T cd00306 110 GGPG--SP-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDGT---------------- 170 (241)
T ss_pred CCCC--CC-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCCC----------------
Confidence 9883 22 345667777777777 9999999999998765 46778899999998543211
Q ss_pred eeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcccccc
Q 045236 194 SLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIAD 273 (604)
Q Consensus 194 ~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~ 273 (604)
T Consensus 171 -------------------------------------------------------------------------------- 170 (241)
T cd00306 171 -------------------------------------------------------------------------------- 170 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccc-cccCCCCCCCCCCccCCceEeCCCcEEeccc
Q 045236 274 SHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVA-AFSSRGPNSLTAEILKPDVIAPGVNILAAWT 352 (604)
Q Consensus 274 ~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a-~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~ 352 (604)
.. .++.+| .|||+.|||..+.....
T Consensus 171 ----------------------------------------------~~~~~~~~~--------~~~~~~apg~~~~~~~~ 196 (241)
T cd00306 171 ----------------------------------------------PASPSSNGG--------AGVDIAAPGGDILSSPT 196 (241)
T ss_pred ----------------------------------------------ccCCcCCCC--------CCceEEeCcCCccCccc
Confidence 11 233333 46799999999987511
Q ss_pred CCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 045236 353 GSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTT 408 (604)
Q Consensus 353 ~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~T 408 (604)
. ....+..++|||||||+|||++|||+|++|++++.++|++|++|
T Consensus 197 ~-----------~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 197 T-----------GGGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred C-----------CCCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 1 11688999999999999999999999999999999999999875
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-28 Score=251.68 Aligned_cols=223 Identities=28% Similarity=0.395 Sum_probs=184.3
Q ss_pred CCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-CCHHHHHHHHHHHHHCCCcEEEEccc
Q 045236 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDILAAMDQAIADGVDVISLSVG 118 (604)
Q Consensus 40 sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~aid~A~~~gvdVIn~SlG 118 (604)
+-.|.-||||.|||+|||... -.|.||+++|+++|||.+.. +..+..+.|+.+|+...+||+|+|+|
T Consensus 233 tLdD~lgHGTFVAGvia~~~e------------c~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIG 300 (1033)
T KOG4266|consen 233 TLDDNLGHGTFVAGVIAGRNE------------CLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIG 300 (1033)
T ss_pred ccccCcccceeEeeeeccchh------------hcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccC
Confidence 345779999999999998851 27999999999999998765 78889999999999999999999999
Q ss_pred CCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCcccCCC--ceEeeccCCCCCccceEEEcCCCcEEEeeeec
Q 045236 119 ASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAP--WILTVGASTIDREFPADAILGDGRIFGGVSLY 196 (604)
Q Consensus 119 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap--~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~ 196 (604)
++ ++.+.|+-.-+.+.....|++|.|+||+||-.+++.|.+. .||.||-
T Consensus 301 GP----DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGG------------------------- 351 (1033)
T KOG4266|consen 301 GP----DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGG------------------------- 351 (1033)
T ss_pred Cc----ccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeecc-------------------------
Confidence 88 4667788777788889999999999999999888876442 3444442
Q ss_pred cCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccccccccc
Q 045236 197 AGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADSHL 276 (604)
Q Consensus 197 ~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ 276 (604)
T Consensus 352 -------------------------------------------------------------------------------- 351 (1033)
T KOG4266|consen 352 -------------------------------------------------------------------------------- 351 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCC----CCCccCCceEeCCCcEEeccc
Q 045236 277 IPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSL----TAEILKPDVIAPGVNILAAWT 352 (604)
Q Consensus 277 ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~----~~~~lKPDI~APG~~I~sa~~ 352 (604)
.+. .+.++.|||||-+.. .-|++||||++-|.+|.....
T Consensus 352 ------------------------------------Idf-dD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v 394 (1033)
T KOG4266|consen 352 ------------------------------------IDF-DDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKV 394 (1033)
T ss_pred ------------------------------------ccc-cchhhhhccCCcceeecCCcccccCCceEeeccccccCcc
Confidence 111 678999999996532 358999999999999876544
Q ss_pred CCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHH----hCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCC
Q 045236 353 GSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRK----AYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEES 428 (604)
Q Consensus 353 ~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~P~~sp~~Iks~L~~TA~~~~~~~~~~~~~~~~~~~ 428 (604)
. .+-..+||||.|+|.|||+++||-+ +.--+.|+.+|++|+..|.++...
T Consensus 395 ~-------------~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~------------- 448 (1033)
T KOG4266|consen 395 S-------------TGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP------------- 448 (1033)
T ss_pred c-------------ccchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC-------------
Confidence 3 5678899999999999999999966 344579999999999999998643
Q ss_pred CCCCCCCcccCccccCCC
Q 045236 429 TPFIHGAGHVDPNRALNP 446 (604)
Q Consensus 429 ~~~~~G~G~id~~~A~~~ 446 (604)
.-|+||+|++|+.++.+-
T Consensus 449 NMfEQGaGkldLL~syqi 466 (1033)
T KOG4266|consen 449 NMFEQGAGKLDLLESYQI 466 (1033)
T ss_pred chhhccCcchhHHHHHHH
Confidence 237999999999998873
|
|
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.3e-19 Score=194.10 Aligned_cols=203 Identities=36% Similarity=0.513 Sum_probs=153.6
Q ss_pred CCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCC-C-CCHHHHHHHHHHHHHCC--CcEEEEc
Q 045236 41 PRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSP-G-CFDSDILAAMDQAIADG--VDVISLS 116 (604)
Q Consensus 41 p~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g-~~~~dil~aid~A~~~g--vdVIn~S 116 (604)
..|.++|||||++++++.... ......|+||+++++.+|++... + ....+++++|+++++.+ +++||||
T Consensus 179 ~~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s 251 (508)
T COG1404 179 FLDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLS 251 (508)
T ss_pred CCCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEec
Confidence 479999999999999984211 11225899999999999999865 4 56677899999999999 9999999
Q ss_pred ccCCCCCCCCcccHHHHHHHhhhcCC-cEEEEcCCCCCCCCCC----cccCC--CceEeeccCCCCCccceEEEcCCCcE
Q 045236 117 VGASGYAPQYDQDSIAIGSFGAAQHG-VVVSCSAGNSGPGPFT----ATNIA--PWILTVGASTIDREFPADAILGDGRI 189 (604)
Q Consensus 117 lG~~~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~G~~~~~----~~~~a--p~vitVgAst~d~~~~~~~~~~~~~~ 189 (604)
+|.. ........+..++..++..| +++|+++||.+..... .+... +.+++|++.+.
T Consensus 252 ~g~~--~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~--------------- 314 (508)
T COG1404 252 LGGS--LSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL--------------- 314 (508)
T ss_pred CCCC--ccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC---------------
Confidence 9975 22234456666666777666 9999999999866421 11111 24444444210
Q ss_pred EEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcc
Q 045236 190 FGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEE 269 (604)
Q Consensus 190 ~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~ 269 (604)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEe
Q 045236 270 LIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILA 349 (604)
Q Consensus 270 ~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~s 349 (604)
.+.++.||++|+.. ..++.|||.+|++
T Consensus 315 -----------------------------------------------~~~~~~~s~~g~~~------~~~~~apg~~i~~ 341 (508)
T COG1404 315 -----------------------------------------------SDTVASFSNDGSPT------GVDIAAPGVNILS 341 (508)
T ss_pred -----------------------------------------------CCccccccccCCCC------CcceeCCCccccc
Confidence 24567899999752 2399999999988
Q ss_pred -----cccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCC-CCCHHHHHHHHHhcccc
Q 045236 350 -----AWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYP-DWSPAAIKSALMTTAYN 411 (604)
Q Consensus 350 -----a~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P-~~sp~~Iks~L~~TA~~ 411 (604)
.+++.. ..|..++||||++|||+|++||+++.+| .+++.+++..+..++..
T Consensus 342 ~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~ 398 (508)
T COG1404 342 LSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGL 398 (508)
T ss_pred cccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccc
Confidence 444310 2499999999999999999999999999 89999999998888874
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-17 Score=177.37 Aligned_cols=102 Identities=25% Similarity=0.283 Sum_probs=81.5
Q ss_pred CceeeecCCCeEEEEEeecCCCCCHHHHHHHHHHHHHC---CCcEEEEcccCCCCCCCC---cccHHHHHHHhhhcCCcE
Q 045236 71 GEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIAD---GVDVISLSVGASGYAPQY---DQDSIAIGSFGAAQHGVV 144 (604)
Q Consensus 71 g~~~GvAP~A~l~~~kv~~~~g~~~~dil~aid~A~~~---gvdVIn~SlG~~~~~~~~---~~~~~~~a~~~a~~~Gi~ 144 (604)
..+.||||+|+|++|+++++. ..+++.++.+++.+ +++|||+|||.. ...+ ..+.+..++.+|.++||+
T Consensus 81 ~~~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~--e~~~~~~~~~~~~~~~~~a~~~Git 155 (361)
T cd04056 81 EYAGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEP--EQSLPPAYAQRVCNLFAQAAAQGIT 155 (361)
T ss_pred HHHHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCcc--ccccCHHHHHHHHHHHHHHHhCCeE
Confidence 346899999999999997542 45677888888887 999999999987 3322 235677788888899999
Q ss_pred EEEcCCCCCCCCC-----------CcccCCCceEeeccCCCCCc
Q 045236 145 VSCSAGNSGPGPF-----------TATNIAPWILTVGASTIDRE 177 (604)
Q Consensus 145 vV~AAGN~G~~~~-----------~~~~~ap~vitVgAst~d~~ 177 (604)
||+|+||+|.... ..+...|||++||+++....
T Consensus 156 vvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~ 199 (361)
T cd04056 156 VLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTG 199 (361)
T ss_pred EEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCC
Confidence 9999999997643 34678999999999876543
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.3e-12 Score=118.54 Aligned_cols=118 Identities=27% Similarity=0.359 Sum_probs=94.5
Q ss_pred CCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccccc-cccccceE
Q 045236 202 PDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIA-DSHLIPAT 280 (604)
Q Consensus 202 ~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~-~~~~ip~~ 280 (604)
.....+++|.+. |....+...+++||||||+|+.|.+.+|..+++.+||.|+|++++......... ....+|++
T Consensus 24 ~~~~~~lv~~g~-----g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v 98 (143)
T cd02133 24 LGKTYELVDAGL-----GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVV 98 (143)
T ss_pred CCcEEEEEEccC-----CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEE
Confidence 346788998653 445556677899999999999999999999999999999999998754322211 12568999
Q ss_pred EEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCC
Q 045236 281 MVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNS 330 (604)
Q Consensus 281 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~ 330 (604)
+|+..++..|++|+++ .++|.+..+.. ..+ ++.++.||||||..
T Consensus 99 ~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~-~p~va~fSsrgp~g 142 (143)
T cd02133 99 FISKEDGEALKAALES----SKKLTFNTKKE-KAT-NPDLADFSSRGPWG 142 (143)
T ss_pred EecHHHHHHHHHHHhC----CCeEEEEeccc-ccc-CCccccccCcCCCC
Confidence 9999999999999988 67777777655 456 88899999999963
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.5e-12 Score=114.77 Aligned_cols=119 Identities=50% Similarity=0.809 Sum_probs=97.3
Q ss_pred EEcCCCcEEEeeeeccCCCCCCceeeEEEcCC----CCCCcccCCCCCCCCccccEEEEecCCc-hhhhHHHHHHhcCce
Q 045236 182 AILGDGRIFGGVSLYAGESLPDFKLHLVYGGD----CGDRFCYMGRLEPSKVQGKIVVCDRGGN-ARVEKGAAVKLAGGL 256 (604)
Q Consensus 182 ~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~----~~~~~C~~~~~~~~~~~gkIvl~~~g~~-~~~~~~~~~~~aGa~ 256 (604)
+.|+|+.++.|+++++... ..+++++... .....|.+..+...+++||||+|+++.+ .+.+|..+++++||.
T Consensus 2 i~LGng~~i~G~sl~~~~~---~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~ 78 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL---KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGA 78 (126)
T ss_pred EEeCCCCEEEEEEccCCCC---CccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCc
Confidence 6789999999999997553 4567765332 2236798888888999999999999999 999999999999999
Q ss_pred EEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEE
Q 045236 257 GMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTAT 303 (604)
Q Consensus 257 g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~ 303 (604)
|+|++++.............+|.+.|+.+++..|++|+++..+++++
T Consensus 79 gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 79 GMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred EEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 99999887654433333568999999999999999999998776554
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-12 Score=130.26 Aligned_cols=97 Identities=16% Similarity=0.180 Sum_probs=68.4
Q ss_pred ccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccc---cCCCCCCCCCCCCCCcccCcccc
Q 045236 367 VDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIK---DLASGEESTPFIHGAGHVDPNRA 443 (604)
Q Consensus 367 ~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~~~~~~---~~~~~~~~~~~~~G~G~id~~~A 443 (604)
.....-||||.|+|-+||+-||.++++|.++..+++.+-.-|.++..-....-+ .+.......+.-+|+|.+|+.+-
T Consensus 376 ~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~mngvglefnhlfgfgvldagam 455 (629)
T KOG3526|consen 376 RCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGVGLEFNHLFGFGVLDAGAM 455 (629)
T ss_pred ceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEeccccceeeecccccccccHHHH
Confidence 456677999999999999999999999999999999998888876532111100 01112233456799999999887
Q ss_pred CCCCceeccCchhhhhccccCCC
Q 045236 444 LNPGLVYDIDVSEYVAFLCSIGY 466 (604)
Q Consensus 444 ~~~glv~d~~~~d~~~~~c~~~~ 466 (604)
+....-+...+. .|-|..|.
T Consensus 456 v~lak~wktvpp---ryhc~ag~ 475 (629)
T KOG3526|consen 456 VMLAKAWKTVPP---RYHCTAGL 475 (629)
T ss_pred HHHHHHhccCCC---ceeecccc
Confidence 765444554444 45577663
|
|
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.9e-09 Score=94.36 Aligned_cols=98 Identities=20% Similarity=0.264 Sum_probs=79.6
Q ss_pred ceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccc---c--ccccccc
Q 045236 204 FKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEEL---I--ADSHLIP 278 (604)
Q Consensus 204 ~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~---~--~~~~~ip 278 (604)
-.-++++......+.|.+..+...+++|||+||+|+.|.+.+|..+++++||.++|++|+....... . .....+|
T Consensus 17 i~~~lv~~~~~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP 96 (122)
T cd04816 17 VTAPLVPLDPERPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVP 96 (122)
T ss_pred cEEEEEEcCCCCccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeee
Confidence 4567888665555789988888889999999999999999999999999999999999976532211 1 1345699
Q ss_pred eEEEchhhHHHHHHHHhhcCCCe
Q 045236 279 ATMVGAIAGDKIREYIKLSQYPT 301 (604)
Q Consensus 279 ~~~i~~~~g~~l~~~~~~~~~~~ 301 (604)
.++|+..+|+.|++++..+.+.+
T Consensus 97 ~~~Is~~~G~~l~~~l~~g~~v~ 119 (122)
T cd04816 97 VGVITKAAGAALRRRLGAGETLE 119 (122)
T ss_pred EEEEcHHHHHHHHHHHcCCCEEE
Confidence 99999999999999998876533
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.6e-09 Score=91.90 Aligned_cols=91 Identities=26% Similarity=0.343 Sum_probs=69.5
Q ss_pred ceeeEEEcCC-CCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCC----CCccccccccccc
Q 045236 204 FKLHLVYGGD-CGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDE----SGEELIADSHLIP 278 (604)
Q Consensus 204 ~~~~lv~~~~-~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~----~~~~~~~~~~~ip 278 (604)
...+||.... .....|.+..+...+++||||||+||.|.+.+|+.+++++||.|+|+++... ...........+|
T Consensus 6 ~~~~lV~~~~~~~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP 85 (101)
T PF02225_consen 6 VTGPLVPAGNGIDEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIP 85 (101)
T ss_dssp EEEEEEEETTEEECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSE
T ss_pred EEEEEEEecCCCCcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEE
Confidence 3567773322 2235577778889999999999999999999999999999999999999211 1122233467899
Q ss_pred eEEEchhhHHHHHHHH
Q 045236 279 ATMVGAIAGDKIREYI 294 (604)
Q Consensus 279 ~~~i~~~~g~~l~~~~ 294 (604)
+++|+..+++.|++|+
T Consensus 86 ~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 86 VVFISYEDGEALLAYI 101 (101)
T ss_dssp EEEE-HHHHHHHHHHH
T ss_pred EEEeCHHHHhhhhccC
Confidence 9999999999999986
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.9e-08 Score=88.53 Aligned_cols=91 Identities=19% Similarity=0.186 Sum_probs=74.1
Q ss_pred ceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcc--cc--ccccccce
Q 045236 204 FKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEE--LI--ADSHLIPA 279 (604)
Q Consensus 204 ~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~--~~--~~~~~ip~ 279 (604)
..+||+..... ..|.+..+...+++|||+|++||.|.|.+|..+++++||.++|++|+...... .. .....||+
T Consensus 20 ~~~~~~~~~~~--~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~ 97 (120)
T cd02129 20 TLLPLRNLTSS--VLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPV 97 (120)
T ss_pred cceeeecCCCc--CCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccE
Confidence 45777766543 56998888888899999999999999999999999999999999998753111 11 13457899
Q ss_pred EEEchhhHHHHHHHHhh
Q 045236 280 TMVGAIAGDKIREYIKL 296 (604)
Q Consensus 280 ~~i~~~~g~~l~~~~~~ 296 (604)
++|+..+|+.|++.+..
T Consensus 98 v~Is~~dG~~i~~~l~~ 114 (120)
T cd02129 98 ALLSYKDMLDIQQTFGD 114 (120)
T ss_pred EEEeHHHHHHHHHHhcc
Confidence 99999999999988764
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.4e-08 Score=88.40 Aligned_cols=95 Identities=25% Similarity=0.355 Sum_probs=73.9
Q ss_pred eEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCC-cccc-------ccccccc
Q 045236 207 HLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESG-EELI-------ADSHLIP 278 (604)
Q Consensus 207 ~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~-~~~~-------~~~~~ip 278 (604)
+|+.... .+.|.+.. ...+++|||+|++||.|.|.+|..+++++||.++|++|+.... ...+ .....||
T Consensus 14 ~lv~~~p--~~gC~~~~-~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP 90 (118)
T cd02127 14 PLVPADP--LEACEELR-NIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIP 90 (118)
T ss_pred EEEECCc--cccCCCCC-CccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEE
Confidence 4444432 25698644 3567999999999999999999999999999999999986542 1111 1235799
Q ss_pred eEEEchhhHHHHHHHHhhcCCCeEEE
Q 045236 279 ATMVGAIAGDKIREYIKLSQYPTATI 304 (604)
Q Consensus 279 ~~~i~~~~g~~l~~~~~~~~~~~~~i 304 (604)
.++|+..+|+.|++.+..+..+.+.|
T Consensus 91 ~v~Is~~dG~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 91 AAFLLGKNGYMIRKTLERLGLPYAII 116 (118)
T ss_pred EEEecHHHHHHHHHHHHcCCceEEee
Confidence 99999999999999999988776654
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.3e-08 Score=87.84 Aligned_cols=85 Identities=25% Similarity=0.307 Sum_probs=69.2
Q ss_pred CcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcccc----ccccccceEEEchhhHHHHHH
Q 045236 217 RFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELI----ADSHLIPATMVGAIAGDKIRE 292 (604)
Q Consensus 217 ~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~----~~~~~ip~~~i~~~~g~~l~~ 292 (604)
+.|.+.... .+++|||+||+|+.|.+.+|..+++++||.|+|++++........ .....+|+++|+.+++..|++
T Consensus 28 ~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l~~ 106 (118)
T cd04818 28 DGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDALKA 106 (118)
T ss_pred cccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHHHH
Confidence 569887763 469999999999999999999999999999999998876422111 123579999999999999999
Q ss_pred HHhhcCCCeE
Q 045236 293 YIKLSQYPTA 302 (604)
Q Consensus 293 ~~~~~~~~~~ 302 (604)
|++.+...++
T Consensus 107 ~l~~g~~v~v 116 (118)
T cd04818 107 ALAAGGTVTV 116 (118)
T ss_pred HHhcCCcEEE
Confidence 9998765443
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.3e-08 Score=89.97 Aligned_cols=87 Identities=18% Similarity=0.126 Sum_probs=71.4
Q ss_pred CcccCCCC--CCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCc--cccc--cccccceEEEchhhHHHH
Q 045236 217 RFCYMGRL--EPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGE--ELIA--DSHLIPATMVGAIAGDKI 290 (604)
Q Consensus 217 ~~C~~~~~--~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~--~~~~--~~~~ip~~~i~~~~g~~l 290 (604)
+.|.+... ...++.|+|+|++||.|.|.+|..+++++||.++|+||+..... ..+. ....+|.++|+..+|+.|
T Consensus 45 ~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~~l 124 (138)
T cd02122 45 YGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGMEI 124 (138)
T ss_pred CCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHHHH
Confidence 67987766 56789999999999999999999999999999999999976221 1111 234789999999999999
Q ss_pred HHHHhhcCCCeEE
Q 045236 291 REYIKLSQYPTAT 303 (604)
Q Consensus 291 ~~~~~~~~~~~~~ 303 (604)
++++.++.+.+++
T Consensus 125 ~~~l~~G~~Vtv~ 137 (138)
T cd02122 125 LELLERGISVTMV 137 (138)
T ss_pred HHHHHcCCcEEEe
Confidence 9999888765543
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.5e-08 Score=88.41 Aligned_cols=85 Identities=24% Similarity=0.305 Sum_probs=70.2
Q ss_pred CcccCCC--CCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccc--c----ccccccceEEEchhhHH
Q 045236 217 RFCYMGR--LEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEEL--I----ADSHLIPATMVGAIAGD 288 (604)
Q Consensus 217 ~~C~~~~--~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~--~----~~~~~ip~~~i~~~~g~ 288 (604)
..|.+.. +...+++||||||+|+.|.+.+|..+++++||.|+|++++....... . .....+|.+.|+..++.
T Consensus 31 ~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~g~ 110 (126)
T cd00538 31 VGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADGE 110 (126)
T ss_pred EEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHHHH
Confidence 3498877 77888999999999999999999999999999999999987632211 1 13457999999999999
Q ss_pred HHHHHHhhcCCCe
Q 045236 289 KIREYIKLSQYPT 301 (604)
Q Consensus 289 ~l~~~~~~~~~~~ 301 (604)
.|++|+.++.+.+
T Consensus 111 ~l~~~~~~~~~v~ 123 (126)
T cd00538 111 ALLSLLEAGKTVT 123 (126)
T ss_pred HHHHHHhcCCceE
Confidence 9999998866543
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.7e-07 Score=83.81 Aligned_cols=95 Identities=20% Similarity=0.199 Sum_probs=74.3
Q ss_pred ceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcc----ccccccccce
Q 045236 204 FKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEE----LIADSHLIPA 279 (604)
Q Consensus 204 ~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~----~~~~~~~ip~ 279 (604)
..-++++.. ...|.+..+ +.+++|||+|++|+.|.|.+|..+++++||.++|++|+...+.. ...+...+|.
T Consensus 22 ~~g~lv~~~---~~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~ 97 (122)
T cd02130 22 VTGPLVVVP---NLGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPT 97 (122)
T ss_pred cEEEEEEeC---CCCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeE
Confidence 346677753 245876554 35799999999999999999999999999999999998733221 1113467999
Q ss_pred EEEchhhHHHHHHHHhhcCCCeE
Q 045236 280 TMVGAIAGDKIREYIKLSQYPTA 302 (604)
Q Consensus 280 ~~i~~~~g~~l~~~~~~~~~~~~ 302 (604)
++|+.++|+.|++.++++.+.++
T Consensus 98 v~Is~~~G~~L~~~l~~g~~v~~ 120 (122)
T cd02130 98 VGISQEDGKALVAALANGGEVSA 120 (122)
T ss_pred EEecHHHHHHHHHHHhcCCcEEE
Confidence 99999999999999998876544
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.3e-08 Score=87.45 Aligned_cols=84 Identities=30% Similarity=0.376 Sum_probs=67.5
Q ss_pred CcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCC------cccc------ccccccceEEEch
Q 045236 217 RFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESG------EELI------ADSHLIPATMVGA 284 (604)
Q Consensus 217 ~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~------~~~~------~~~~~ip~~~i~~ 284 (604)
..|.+... ..+++|||+|++||.|.|.+|..+++++||.++|++|+.... ...+ .+...||+++|+.
T Consensus 28 ~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~~ 106 (126)
T cd02126 28 RACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLFS 106 (126)
T ss_pred hcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEEH
Confidence 56976543 557899999999999999999999999999999999875532 1111 1245799999999
Q ss_pred hhHHHHHHHHhhcCCCe
Q 045236 285 IAGDKIREYIKLSQYPT 301 (604)
Q Consensus 285 ~~g~~l~~~~~~~~~~~ 301 (604)
.+|+.|++++..+...+
T Consensus 107 ~dG~~L~~~l~~~~~~~ 123 (126)
T cd02126 107 KEGSKLLAAIKEHQNVE 123 (126)
T ss_pred HHHHHHHHHHHhCCceE
Confidence 99999999998876543
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.7e-07 Score=84.05 Aligned_cols=86 Identities=19% Similarity=0.235 Sum_probs=67.8
Q ss_pred CcccCCCCC--CC----CccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcccc-----------ccccccce
Q 045236 217 RFCYMGRLE--PS----KVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELI-----------ADSHLIPA 279 (604)
Q Consensus 217 ~~C~~~~~~--~~----~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~-----------~~~~~ip~ 279 (604)
+.|.+.... +. ...++|+|++||.|.|.+|..+|+++||.++|++|+.+.....+ .+...||+
T Consensus 23 ~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP~ 102 (127)
T cd02125 23 TGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIPS 102 (127)
T ss_pred ccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEeE
Confidence 568765442 22 37889999999999999999999999999999999865432211 12346999
Q ss_pred EEEchhhHHHHHHHHhhcCCCeE
Q 045236 280 TMVGAIAGDKIREYIKLSQYPTA 302 (604)
Q Consensus 280 ~~i~~~~g~~l~~~~~~~~~~~~ 302 (604)
++|+..+|..|++.+..+...++
T Consensus 103 v~Is~~~G~~L~~~l~~g~~V~v 125 (127)
T cd02125 103 ALITKAFGEKLKKAISNGEMVVI 125 (127)
T ss_pred EEECHHHHHHHHHHHhcCCeEEE
Confidence 99999999999999998875544
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.6e-07 Score=85.05 Aligned_cols=87 Identities=25% Similarity=0.373 Sum_probs=66.7
Q ss_pred eeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCch-----hhhHHHHHHhcCceEEEEEcCCCC-C-c-ccccc---
Q 045236 205 KLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNA-----RVEKGAAVKLAGGLGMILANTDES-G-E-ELIAD--- 273 (604)
Q Consensus 205 ~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~-----~~~~~~~~~~aGa~g~i~~~~~~~-~-~-~~~~~--- 273 (604)
.-+|++.+.. .| .+.+.+++|||+|++||.|. |.+|.++++++||.|+|+||+... + . ..+.+
T Consensus 37 tg~lv~~g~~---g~---d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~ 110 (139)
T cd04817 37 TGSLYYCGTS---GG---SYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNN 110 (139)
T ss_pred eEEEEEccCC---Cc---cccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCC
Confidence 4466664421 14 34566899999999999999 999999999999999999999721 2 1 11222
Q ss_pred ccccceEEEchhhHHHHHHHHhhc
Q 045236 274 SHLIPATMVGAIAGDKIREYIKLS 297 (604)
Q Consensus 274 ~~~ip~~~i~~~~g~~l~~~~~~~ 297 (604)
...||+++|+..+|+.|+..+...
T Consensus 111 ~~~IP~v~is~~dG~~L~~~l~~~ 134 (139)
T cd04817 111 DTTIPSVSVDRADGQALLAALGQS 134 (139)
T ss_pred CceEeEEEeeHHHHHHHHHHhcCC
Confidence 458999999999999999987543
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=98.62 E-value=5e-07 Score=81.29 Aligned_cols=84 Identities=18% Similarity=0.189 Sum_probs=66.0
Q ss_pred CCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccc-cccccccceEEEchhhHHHHHHHH
Q 045236 216 DRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEEL-IADSHLIPATMVGAIAGDKIREYI 294 (604)
Q Consensus 216 ~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~-~~~~~~ip~~~i~~~~g~~l~~~~ 294 (604)
.+.|.+...+..+++|||+|++|+.|.|.+|..+++++||.++|+||+....... ..+...+|.+.+ ..+|+.|++.+
T Consensus 41 ~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~~l 119 (129)
T cd02124 41 DDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWIDAL 119 (129)
T ss_pred cccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHHHH
Confidence 3789876555568999999999999999999999999999999999987543221 122334566666 99999999999
Q ss_pred hhcCCC
Q 045236 295 KLSQYP 300 (604)
Q Consensus 295 ~~~~~~ 300 (604)
+.+...
T Consensus 120 ~~G~~v 125 (129)
T cd02124 120 AAGSNV 125 (129)
T ss_pred hcCCeE
Confidence 877543
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=98.60 E-value=2e-07 Score=85.25 Aligned_cols=92 Identities=23% Similarity=0.330 Sum_probs=71.4
Q ss_pred eeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcccc------ccccccc
Q 045236 205 KLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELI------ADSHLIP 278 (604)
Q Consensus 205 ~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~------~~~~~ip 278 (604)
..+++.... .+.|.+.. .+++|||+|++||.|.|.+|..+++++||.++|+||+........ .....||
T Consensus 39 ~~~lv~~~~--~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP 113 (139)
T cd02132 39 KTRAVLANP--LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIP 113 (139)
T ss_pred EEEEEECCc--ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEe
Confidence 455665432 35698654 478999999999999999999999999999999998764321111 1135799
Q ss_pred eEEEchhhHHHHHHHHhhcCCCe
Q 045236 279 ATMVGAIAGDKIREYIKLSQYPT 301 (604)
Q Consensus 279 ~~~i~~~~g~~l~~~~~~~~~~~ 301 (604)
+++|+..+|+.|++++..+...+
T Consensus 114 ~v~Is~~~G~~L~~~l~~g~~Vt 136 (139)
T cd02132 114 VVMIPQSAGDALNKSLDQGKKVE 136 (139)
T ss_pred EEEecHHHHHHHHHHHHcCCcEE
Confidence 99999999999999998876543
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.3e-07 Score=82.00 Aligned_cols=79 Identities=19% Similarity=0.302 Sum_probs=64.7
Q ss_pred CcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCC-cccc-----ccccccceEEEchhhHHHH
Q 045236 217 RFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESG-EELI-----ADSHLIPATMVGAIAGDKI 290 (604)
Q Consensus 217 ~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~-~~~~-----~~~~~ip~~~i~~~~g~~l 290 (604)
+.|.+. +..+++|||+|++||.|.|.+|..+++++||.++|++|+.... ...+ .....+|+++|+..++..|
T Consensus 28 ~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~~L 105 (117)
T cd04813 28 DACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYHLL 105 (117)
T ss_pred CCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHHHH
Confidence 569765 5688999999999999999999999999999999999876542 1111 2345799999999999999
Q ss_pred HHHHhhc
Q 045236 291 REYIKLS 297 (604)
Q Consensus 291 ~~~~~~~ 297 (604)
..++...
T Consensus 106 ~~l~~~~ 112 (117)
T cd04813 106 SSLLPKS 112 (117)
T ss_pred HHhcccc
Confidence 9886554
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=98.50 E-value=5e-07 Score=83.87 Aligned_cols=83 Identities=20% Similarity=0.238 Sum_probs=68.8
Q ss_pred CcccCCCCCC---CCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccccc------cccccceEEEchhhH
Q 045236 217 RFCYMGRLEP---SKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIA------DSHLIPATMVGAIAG 287 (604)
Q Consensus 217 ~~C~~~~~~~---~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~------~~~~ip~~~i~~~~g 287 (604)
+.|.+....+ ....|||+|++||.|.|.+|..+++++||.++|++|+.......+. ....||+++|+..+|
T Consensus 51 ~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~dg 130 (153)
T cd02123 51 NACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKSTG 130 (153)
T ss_pred ccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHHH
Confidence 5698766544 7899999999999999999999999999999999998654322221 145899999999999
Q ss_pred HHHHHHHhhcCC
Q 045236 288 DKIREYIKLSQY 299 (604)
Q Consensus 288 ~~l~~~~~~~~~ 299 (604)
+.|+.++.....
T Consensus 131 ~~L~~~l~~~~~ 142 (153)
T cd02123 131 EILKKYASYEKG 142 (153)
T ss_pred HHHHHHHhcCCc
Confidence 999999987754
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.3e-06 Score=74.63 Aligned_cols=91 Identities=23% Similarity=0.211 Sum_probs=70.7
Q ss_pred CceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCc--hhhhHHHHHHhcCceEEEEEcCCCCCcccc-------cc
Q 045236 203 DFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGN--ARVEKGAAVKLAGGLGMILANTDESGEELI-------AD 273 (604)
Q Consensus 203 ~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~--~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~-------~~ 273 (604)
..+.+++|.+.. .+..+...+++|||||++++.+ .+.+|..++.++||.|+|++++........ ..
T Consensus 22 ~~~~~lV~~g~G-----~~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~ 96 (127)
T cd04819 22 EAKGEPVDAGYG-----LPKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGP 96 (127)
T ss_pred CeeEEEEEeCCC-----CHHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCC
Confidence 457888886532 2233446679999999999998 889999999999999999998755432211 12
Q ss_pred ccccceEEEchhhHHHHHHHHhhcC
Q 045236 274 SHLIPATMVGAIAGDKIREYIKLSQ 298 (604)
Q Consensus 274 ~~~ip~~~i~~~~g~~l~~~~~~~~ 298 (604)
...+|++.|+.++++.|...++.+.
T Consensus 97 ~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 97 PSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred CCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 3579999999999999999988754
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.7e-05 Score=69.79 Aligned_cols=83 Identities=12% Similarity=0.171 Sum_probs=57.2
Q ss_pred eEEEEEEEeccCCCCceEEEEEEEC--------CCC----------c-EEEEEcceEEEcccceeEEEEEEEEeeccCCC
Q 045236 509 VVKYKRVVKNVGSSVDAVYEVKVNA--------PPN----------V-AVNVWPSKLAFSAEKKALAYEITFSSVGLDGL 569 (604)
Q Consensus 509 ~~t~~rtv~n~~~~~~~ty~~~~~~--------~~g----------~-~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~ 569 (604)
..+++.|++|.|+. +.+|+++... ..| . .+...|..+++ ++|++++++|+|+.+...+.
T Consensus 9 ~~~~~itl~N~~~~-~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~~p~~~~~ 86 (112)
T PF06280_consen 9 KFSFTITLHNYGDK-PVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTITPPSGLDA 86 (112)
T ss_dssp EEEEEEEEEE-SSS--EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--GGGHH
T ss_pred ceEEEEEEEECCCC-CEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEEehhcCCc
Confidence 47889999999998 9999988762 111 1 56777889999 69999999999999663211
Q ss_pred CCCCceEEEEEEEc-CC-eEEEEEEE
Q 045236 570 GVSPQQSGSIEWSD-GV-HLVRSPIA 593 (604)
Q Consensus 570 ~~~~~~~G~l~~~~-~~-~~v~~P~~ 593 (604)
....+++|+|.+++ .. ..+++||+
T Consensus 87 ~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 87 SNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp TT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred ccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 24789999999994 44 49999986
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00017 Score=65.45 Aligned_cols=77 Identities=14% Similarity=0.163 Sum_probs=61.0
Q ss_pred CCCCccccEEEEecCCc------hhhhH-------HHHHHhcCceEEEEEcCCCC-------Ccccc-ccccccceEEEc
Q 045236 225 EPSKVQGKIVVCDRGGN------ARVEK-------GAAVKLAGGLGMILANTDES-------GEELI-ADSHLIPATMVG 283 (604)
Q Consensus 225 ~~~~~~gkIvl~~~g~~------~~~~~-------~~~~~~aGa~g~i~~~~~~~-------~~~~~-~~~~~ip~~~i~ 283 (604)
...+++||||++.++.| .+..| ...++++||.++|+++.... +.... .....+|++.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 45689999999999999 88888 69999999999999985322 21111 123569999999
Q ss_pred hhhHHHHHHHHhhcCCCe
Q 045236 284 AIAGDKIREYIKLSQYPT 301 (604)
Q Consensus 284 ~~~g~~l~~~~~~~~~~~ 301 (604)
.+++..|...++.+...+
T Consensus 114 ~ed~~~L~r~l~~g~~v~ 131 (134)
T cd04815 114 VEDADMLERLAARGKPIR 131 (134)
T ss_pred hhcHHHHHHHHhCCCCeE
Confidence 999999999988876443
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00051 Score=65.13 Aligned_cols=89 Identities=20% Similarity=0.191 Sum_probs=65.0
Q ss_pred ceeeEEEcCCCCCCcccCCCC-----CCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcc---------
Q 045236 204 FKLHLVYGGDCGDRFCYMGRL-----EPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEE--------- 269 (604)
Q Consensus 204 ~~~~lv~~~~~~~~~C~~~~~-----~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~--------- 269 (604)
.+-++||.+. |....+ ...+++|||+|++++.|.+.+|+++|+++||+|+|+|++..+...
T Consensus 29 v~g~lVyvn~-----G~~~Df~~L~~~gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g 103 (183)
T cd02128 29 VTGKLVYANY-----GRKKDFEDLQSVGVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFG 103 (183)
T ss_pred eEEEEEEcCC-----CCHHHHHHHHhcCCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeec
Confidence 4668888642 222222 246899999999999999999999999999999999988421000
Q ss_pred ---------c-----------c--c---cccccceEEEchhhHHHHHHHHhhc
Q 045236 270 ---------L-----------I--A---DSHLIPATMVGAIAGDKIREYIKLS 297 (604)
Q Consensus 270 ---------~-----------~--~---~~~~ip~~~i~~~~g~~l~~~~~~~ 297 (604)
. . . .-..||++-|+..++..|+..+.-.
T Consensus 104 ~~~~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~G~ 156 (183)
T cd02128 104 HVHLGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMGGP 156 (183)
T ss_pred ceeccCCCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcCCC
Confidence 0 0 0 1235899999999999999987544
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0015 Score=76.62 Aligned_cols=98 Identities=22% Similarity=0.231 Sum_probs=57.8
Q ss_pred CceeeecCCCeEEEEEeecCCCCCHHHHHHHHHHHHHCCC-cEEEEcccCCCCC-CCC--cccHHHHHHHhhhcCCcEEE
Q 045236 71 GEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGV-DVISLSVGASGYA-PQY--DQDSIAIGSFGAAQHGVVVS 146 (604)
Q Consensus 71 g~~~GvAP~A~l~~~kv~~~~g~~~~dil~aid~A~~~gv-dVIn~SlG~~~~~-~~~--~~~~~~~a~~~a~~~Gi~vV 146 (604)
....-+||+|+|..|-+ ..+ .......|+..-...=+ -+|-+||+...+. ..+ .-+.+....+.|.++||.++
T Consensus 286 E~s~A~AP~A~I~lvva--p~~-~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~ 362 (1174)
T COG4934 286 EWSHAMAPKANIDLVVA--PNP-LVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIF 362 (1174)
T ss_pred hhhhccCccCceEEEEc--CCC-ceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEE
Confidence 33578899999998866 211 11122222222111101 3334566644211 111 23455666667789999999
Q ss_pred EcCCCCCCCCCC--------cccCCCceEeecc
Q 045236 147 CSAGNSGPGPFT--------ATNIAPWILTVGA 171 (604)
Q Consensus 147 ~AAGN~G~~~~~--------~~~~ap~vitVgA 171 (604)
+|+|.+|....+ .+..+|||++||-
T Consensus 363 AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 363 AASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred EecccccccCCCcccceeecccCCCccEEeecC
Confidence 999999866542 3458899999996
|
|
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0011 Score=60.38 Aligned_cols=62 Identities=19% Similarity=0.135 Sum_probs=51.2
Q ss_pred ceeeEEEcCCC-CCCcccCCCCCCCCccccEEEEecCCc------------------hhhhHHHHHHhcCceEEEEEcCC
Q 045236 204 FKLHLVYGGDC-GDRFCYMGRLEPSKVQGKIVVCDRGGN------------------ARVEKGAAVKLAGGLGMILANTD 264 (604)
Q Consensus 204 ~~~~lv~~~~~-~~~~C~~~~~~~~~~~gkIvl~~~g~~------------------~~~~~~~~~~~aGa~g~i~~~~~ 264 (604)
...++||.+-. ....|....+...+++||||++.++.| .+..|.+.++++||.|+|++++.
T Consensus 20 ~~aelVfvGyGi~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~ 99 (142)
T cd04814 20 KDAPLVFVGYGIKAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHEL 99 (142)
T ss_pred cceeeEEecCCcCCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCC
Confidence 46788887633 235688888889999999999998876 47789999999999999999986
Q ss_pred C
Q 045236 265 E 265 (604)
Q Consensus 265 ~ 265 (604)
.
T Consensus 100 ~ 100 (142)
T cd04814 100 A 100 (142)
T ss_pred C
Confidence 5
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.002 Score=58.35 Aligned_cols=63 Identities=33% Similarity=0.296 Sum_probs=51.0
Q ss_pred ceeeEEEcCCCC-CCcccCCCCCCCCccccEEEEecCCch------------hhhHHHHHHhcCceEEEEEcCCCC
Q 045236 204 FKLHLVYGGDCG-DRFCYMGRLEPSKVQGKIVVCDRGGNA------------RVEKGAAVKLAGGLGMILANTDES 266 (604)
Q Consensus 204 ~~~~lv~~~~~~-~~~C~~~~~~~~~~~gkIvl~~~g~~~------------~~~~~~~~~~aGa~g~i~~~~~~~ 266 (604)
...++||.+... ...|....+...+++|||||+.++.+. +.+|.+++.++||.|+|++++...
T Consensus 22 v~gelVfvGyG~~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~~ 97 (137)
T cd04820 22 VEAPLVFVGYGLVAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPRS 97 (137)
T ss_pred ceEeEEEecCCcCccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 467888876432 356877788888999999999998763 678999999999999999998543
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.003 Score=58.25 Aligned_cols=63 Identities=21% Similarity=0.162 Sum_probs=50.3
Q ss_pred ceeeEEEcCCCC-CCcccCCCCCCCCccccEEEEecCC------------------chhhhHHHHHHhcCceEEEEEcCC
Q 045236 204 FKLHLVYGGDCG-DRFCYMGRLEPSKVQGKIVVCDRGG------------------NARVEKGAAVKLAGGLGMILANTD 264 (604)
Q Consensus 204 ~~~~lv~~~~~~-~~~C~~~~~~~~~~~gkIvl~~~g~------------------~~~~~~~~~~~~aGa~g~i~~~~~ 264 (604)
.+-++||.+-.. ...|....+...+++|||||+.++. |.+..|..++.+.||.|+|++++.
T Consensus 20 vtg~lVfvGyGi~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~ 99 (151)
T cd04822 20 VTAPVVFAGYGITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGP 99 (151)
T ss_pred ceEeEEEecCCcCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCC
Confidence 456888876432 3567777778889999999998763 567889999999999999999985
Q ss_pred CC
Q 045236 265 ES 266 (604)
Q Consensus 265 ~~ 266 (604)
..
T Consensus 100 ~~ 101 (151)
T cd04822 100 NS 101 (151)
T ss_pred cc
Confidence 44
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0047 Score=65.49 Aligned_cols=79 Identities=20% Similarity=0.334 Sum_probs=64.2
Q ss_pred CCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCC------CccccccccccceEEEchhhHHHHHHHHhhcCC
Q 045236 226 PSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDES------GEELIADSHLIPATMVGAIAGDKIREYIKLSQY 299 (604)
Q Consensus 226 ~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~------~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~ 299 (604)
..+.++|++++.||.|.|.+|...++.+||.+++++|+..+ +.........||+++++.++++.+......+.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 46789999999999999999999999999999999998432 122223456899999999999999987766665
Q ss_pred CeEEE
Q 045236 300 PTATI 304 (604)
Q Consensus 300 ~~~~i 304 (604)
.++.+
T Consensus 171 V~~~l 175 (541)
T KOG2442|consen 171 VELAL 175 (541)
T ss_pred EEEEE
Confidence 55544
|
|
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.058 Score=46.15 Aligned_cols=94 Identities=18% Similarity=0.196 Sum_probs=70.2
Q ss_pred CCCCCCCceeeeccCCCceEEEEEEEeccCCCCceEEEEEEECCCCcEEEEEcceEEEcccceeEEEEEEEEeeccCCCC
Q 045236 491 PGNLNYPSFSVVFNSNNDVVKYKRVVKNVGSSVDAVYEVKVNAPPNVAVNVWPSKLAFSAEKKALAYEITFSSVGLDGLG 570 (604)
Q Consensus 491 ~~~ln~ps~~~~~~~~~~~~t~~rtv~n~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~ 570 (604)
+..|+|..+.+ +...+.+.+++|.+.. +..|++.........+++.|..-.+ .+|++.++.|+|.+...
T Consensus 8 P~~ldFG~v~~-----g~~~~~~v~l~N~s~~-p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~~---- 76 (102)
T PF14874_consen 8 PKELDFGNVFV-----GQTYSRTVTLTNTSSI-PARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTKP---- 76 (102)
T ss_pred CCEEEeeEEcc-----CCEEEEEEEEEECCCC-CEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCCC----
Confidence 44566665443 3567788899999998 8999987654234567777777666 68999999999996543
Q ss_pred CCCceEEEEEEEcCCeEEEEEEEEEe
Q 045236 571 VSPQQSGSIEWSDGVHLVRSPIAVRW 596 (604)
Q Consensus 571 ~~~~~~G~l~~~~~~~~v~~P~~~~~ 596 (604)
.+.+.+.|...-.+..+.+|+-+..
T Consensus 77 -~g~~~~~l~i~~e~~~~~i~v~a~~ 101 (102)
T PF14874_consen 77 -LGDYEGSLVITTEGGSFEIPVKAEV 101 (102)
T ss_pred -CceEEEEEEEEECCeEEEEEEEEEE
Confidence 3568899999877778888887653
|
|
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.008 Score=65.14 Aligned_cols=75 Identities=23% Similarity=0.177 Sum_probs=57.5
Q ss_pred EecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCCCCcccCccccCCC
Q 045236 371 IISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALNP 446 (604)
Q Consensus 371 ~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A~~~ 446 (604)
--.|||.++|..||+.+|.++++|.++..++..++..++...............+. .....+|+|++|...-+..
T Consensus 251 ~h~g~s~~~~~~a~~~~~~~~~~~~ls~~d~~~l~~~~~~~~~~~~~~~~~n~~g~-~~~h~~g~~~~~~~~~~~~ 325 (431)
T KOG3525|consen 251 GHTGTSASAPLAAGIIALALEANPCLSWRDSQHLIVLTSRPKVLLKGKWKSNGAGG-LVSHLYGFGLLDAKALVSC 325 (431)
T ss_pred cCCCCcCccchhcchhhhhhccCccccccchhhhhhhhcchhhccCCCceEecCCc-eeeeeecccccCcchhhhh
Confidence 34599999999999999999999999999999999999987654443333332122 2335799999998877663
|
|
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.014 Score=57.39 Aligned_cols=57 Identities=30% Similarity=0.358 Sum_probs=46.0
Q ss_pred ceeeEEEcCCCCCCcccCCCC-----CCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCC
Q 045236 204 FKLHLVYGGDCGDRFCYMGRL-----EPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDE 265 (604)
Q Consensus 204 ~~~~lv~~~~~~~~~C~~~~~-----~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~ 265 (604)
...++||.+- |....+ ...+++|||||++++.+.+.+|+++|+++||+|+|+|++..
T Consensus 45 v~g~lVyvny-----G~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 45 VTAELVYANY-----GSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred ceEEEEEcCC-----CcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCch
Confidence 4678888753 433332 25689999999999999889999999999999999999854
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower |
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.011 Score=53.86 Aligned_cols=39 Identities=21% Similarity=0.131 Sum_probs=36.4
Q ss_pred CCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCC
Q 045236 227 SKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDE 265 (604)
Q Consensus 227 ~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~ 265 (604)
-+++|||+|++.|...+..|+++|++.||.|+|+|.+..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 579999999999999999999999999999999998843
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.032 Score=50.54 Aligned_cols=101 Identities=21% Similarity=0.201 Sum_probs=72.5
Q ss_pred eeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccc----------cccc
Q 045236 205 KLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEEL----------IADS 274 (604)
Q Consensus 205 ~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~----------~~~~ 274 (604)
..+||.+... ..|.... +.-+..+.|.|++||+|+|..|..+++++||.++|+.++....+.. ..+.
T Consensus 65 ~~~lV~adPp--~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~ 141 (193)
T KOG3920|consen 65 NLELVLADPP--HACEELR-NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDR 141 (193)
T ss_pred CcceeecCCh--hHHHHHh-hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccc
Confidence 4566665443 4475422 3446788999999999999999999999999999998765443322 1245
Q ss_pred cccceEEEchhhHHHHHHHHhhcCCCeEEEEeee
Q 045236 275 HLIPATMVGAIAGDKIREYIKLSQYPTATIVFRG 308 (604)
Q Consensus 275 ~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 308 (604)
..+|++++-..+|..+..-++.....-+.|..+.
T Consensus 142 AniPa~fllg~~Gy~ir~sL~r~~r~ha~i~IPV 175 (193)
T KOG3920|consen 142 ANIPAVFLLGVTGYYIRVSLKRYFRDHAKIDIPV 175 (193)
T ss_pred cCCceEEEeccceEEEehhHHHhCCccEEEeccc
Confidence 6899999999998877777766655555554443
|
|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.083 Score=54.94 Aligned_cols=81 Identities=17% Similarity=0.174 Sum_probs=62.6
Q ss_pred CcccCCCC---CCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccccc----cccccceEEEchhhHHH
Q 045236 217 RFCYMGRL---EPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIA----DSHLIPATMVGAIAGDK 289 (604)
Q Consensus 217 ~~C~~~~~---~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~----~~~~ip~~~i~~~~g~~ 289 (604)
+.|++..- ........++|+.||+|.|.+|+.+|+++|..++|+||+....+.... ....++.++++...|+.
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~ 142 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGEL 142 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHH
Confidence 45765432 234567789999999999999999999999999999998666543322 45678999999999999
Q ss_pred HHHHHhhc
Q 045236 290 IREYIKLS 297 (604)
Q Consensus 290 l~~~~~~~ 297 (604)
|..|....
T Consensus 143 l~~~~~~~ 150 (348)
T KOG4628|consen 143 LSSYAGRT 150 (348)
T ss_pred HHHhhccc
Confidence 99875443
|
|
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.31 Score=39.55 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=39.0
Q ss_pred CceEEEEEEEeccCCCCceEEEEEEECCCCcEEEEEcceEEEcccceeEEEEEEEEeecc
Q 045236 507 NDVVKYKRVVKNVGSSVDAVYEVKVNAPPNVAVNVWPSKLAFSAEKKALAYEITFSSVGL 566 (604)
Q Consensus 507 ~~~~t~~rtv~n~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~ 566 (604)
+.+.+++.+|+|.|.......++++..|.|-++...|..+.--++|++++++++|++...
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~ 63 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPAD 63 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCC
Confidence 467899999999997512457888889999998888887764478999999999998865
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2 | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.34 Score=45.06 Aligned_cols=61 Identities=18% Similarity=0.058 Sum_probs=42.0
Q ss_pred ceeeEEEcCCCCCC-cccCCCCCCCCccccEEEEecCCch-------------------hhhHHHHHHhcCceEEEEEcC
Q 045236 204 FKLHLVYGGDCGDR-FCYMGRLEPSKVQGKIVVCDRGGNA-------------------RVEKGAAVKLAGGLGMILANT 263 (604)
Q Consensus 204 ~~~~lv~~~~~~~~-~C~~~~~~~~~~~gkIvl~~~g~~~-------------------~~~~~~~~~~aGa~g~i~~~~ 263 (604)
...+|||.+-.-.. .-..+.+...|++||||++.+++.. ...|.+.+.+.||.|+|++..
T Consensus 22 ~~~elVFvGyGi~ape~~~dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~ 101 (157)
T cd04821 22 KDSPLVFVGYGIVAPEYGWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHE 101 (157)
T ss_pred ccCCEEEeccCccCcccCcccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeC
Confidence 45677776532110 0122456678999999999865432 234899999999999999987
Q ss_pred C
Q 045236 264 D 264 (604)
Q Consensus 264 ~ 264 (604)
.
T Consensus 102 ~ 102 (157)
T cd04821 102 T 102 (157)
T ss_pred C
Confidence 4
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A | Back alignment and domain information |
|---|
Probab=88.57 E-value=10 Score=33.25 Aligned_cols=57 Identities=9% Similarity=0.098 Sum_probs=40.6
Q ss_pred eEEEEEEEeccCCCCceEEEEEEECCCCcEEEEEcceEEEcccceeEEEEEEEEeeccC
Q 045236 509 VVKYKRVVKNVGSSVDAVYEVKVNAPPNVAVNVWPSKLAFSAEKKALAYEITFSSVGLD 567 (604)
Q Consensus 509 ~~t~~rtv~n~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~ 567 (604)
.-.++.+++|.... +.+|++++..++|+++......+++ .+|++.++.+.+..+...
T Consensus 32 ~N~Y~lkl~Nkt~~-~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQ-PRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEEEE-SSS--EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GGG
T ss_pred EEEEEEEEEECCCC-CEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECHHH
Confidence 44678899999998 9999999999889999665578888 689999999999988763
|
|
| >PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function | Back alignment and domain information |
|---|
Probab=84.35 E-value=21 Score=31.67 Aligned_cols=72 Identities=13% Similarity=0.126 Sum_probs=52.6
Q ss_pred CCceEEEEEEEeccCCCCceEEEEEEEC----CCCc--------------E-----EEEEcceEEEcccceeEEEEEEEE
Q 045236 506 NNDVVKYKRVVKNVGSSVDAVYEVKVNA----PPNV--------------A-----VNVWPSKLAFSAEKKALAYEITFS 562 (604)
Q Consensus 506 ~~~~~t~~rtv~n~~~~~~~ty~~~~~~----~~g~--------------~-----v~v~p~~~~~~~~~~~~~~~v~~~ 562 (604)
.+++.++..+|+|.++. +.+|.+++.. ..|+ . +.-.|..+++ +++++++++++++
T Consensus 25 P~q~~~l~v~i~N~s~~-~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl-~~~~sk~V~~~i~ 102 (121)
T PF06030_consen 25 PGQKQTLEVRITNNSDK-EITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTL-PPNESKTVTFTIK 102 (121)
T ss_pred CCCEEEEEEEEEeCCCC-CEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEE-CCCCEEEEEEEEE
Confidence 35788999999999998 8999887653 1110 0 1112445777 6899999999999
Q ss_pred eeccCCCCCCCceEEEEEEE
Q 045236 563 SVGLDGLGVSPQQSGSIEWS 582 (604)
Q Consensus 563 ~~~~~~~~~~~~~~G~l~~~ 582 (604)
.+... -.+.+-|.|.+.
T Consensus 103 ~P~~~---f~G~ilGGi~~~ 119 (121)
T PF06030_consen 103 MPKKA---FDGIILGGIYFS 119 (121)
T ss_pred cCCCC---cCCEEEeeEEEE
Confidence 98864 578888888875
|
|
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.15 E-value=9 Score=41.40 Aligned_cols=72 Identities=13% Similarity=0.096 Sum_probs=59.1
Q ss_pred CceEEEEEEEeccCCCCceE-EEEEEECCCCcEEEEEcceEEEcccceeEEEEEEEEeeccCCCCCCCceEEEEEEE
Q 045236 507 NDVVKYKRVVKNVGSSVDAV-YEVKVNAPPNVAVNVWPSKLAFSAEKKALAYEITFSSVGLDGLGVSPQQSGSIEWS 582 (604)
Q Consensus 507 ~~~~t~~rtv~n~~~~~~~t-y~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~G~l~~~ 582 (604)
+...+..-.+.|.|+. +.| ..+++..|.|-++.|.|.++---++++++++.+|++++... ..+-++=+|+-+
T Consensus 396 Gee~~i~i~I~NsGna-~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a---~aGdY~i~i~~k 468 (513)
T COG1470 396 GEEKTIRISIENSGNA-PLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDA---GAGDYRITITAK 468 (513)
T ss_pred CccceEEEEEEecCCC-ccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCC---CCCcEEEEEEEe
Confidence 4567888899999987 554 68899999999999999987666899999999999998874 456666666666
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 604 | ||||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 4e-99 | ||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 4e-92 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 5e-12 | ||
| 3eif_A | 936 | 1.9 Angstrom Crystal Structure Of The Active Form O | 4e-09 | ||
| 1wsd_A | 269 | Alkaline M-Protease Form I Crystal Strcuture Length | 9e-09 | ||
| 1xf1_A | 926 | Structure Of C5a Peptidase- A Key Virulence Factor | 7e-08 | ||
| 1st3_A | 269 | The Crystal Structure Of The Bacillus Lentus Alkali | 8e-08 | ||
| 1ndq_A | 269 | Bacillus Lentus Subtilisin Length = 269 | 8e-08 | ||
| 1ah2_A | 269 | Serine Protease Pb92 From Bacillus Alcalophilus, Nm | 9e-08 | ||
| 1ndu_A | 269 | Bacillus Lentus Subtilisin Variant S101gV104N Lengt | 9e-08 | ||
| 1c9j_A | 269 | Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A | 1e-07 | ||
| 3f49_S | 266 | Anion-Triggered Engineered Subtilisin Subt_bacam Le | 1e-07 | ||
| 1q5p_A | 269 | S156e/s166d Variant Of Bacillus Lentus Subtilisin L | 3e-07 | ||
| 1c9m_A | 269 | Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I L | 3e-07 | ||
| 1iav_A | 269 | Structure On Native (Asn 87) Subtilisin From Bacill | 3e-07 | ||
| 3cnq_S | 266 | Prosubtilisin Substrate Complex Of Subtilisin Subt_ | 3e-07 | ||
| 1dui_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Cr | 3e-07 | ||
| 1c9n_A | 269 | Bacillus Lentus Substilisin Variant (Ser 87) K27rV1 | 3e-07 | ||
| 1sbi_A | 275 | Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, | 8e-07 | ||
| 2sbt_A | 275 | A Comparison Of The Three-Dimensional Structures Of | 1e-06 | ||
| 2sni_E | 275 | Structural Comparison Of Two Serine Proteinase-Prot | 1e-06 | ||
| 1sue_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mu | 1e-06 | ||
| 1s01_A | 275 | Large Increases In General Stability For Subtilisin | 1e-06 | ||
| 1aqn_A | 275 | Subtilisin Mutant 8324 Length = 275 | 1e-06 | ||
| 1sua_A | 266 | Subtilisin Bpn' Length = 266 | 1e-06 | ||
| 1ak9_A | 275 | Subtilisin Mutant 8321 Length = 275 | 1e-06 | ||
| 1spb_S | 266 | Subtilisin Bpn' Prosegment (77 Residues) Complexed | 1e-06 | ||
| 1yjb_A | 275 | Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit | 2e-06 | ||
| 1s02_A | 275 | Effects Of Engineered Salt Bridges On The Stability | 2e-06 | ||
| 2sic_E | 275 | Refined Crystal Structure Of The Complex Of Subtili | 2e-06 | ||
| 1lw6_E | 281 | Crystal Structure Of The Complex Of Subtilisin Bpn' | 2e-06 | ||
| 1sub_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 3e-06 | ||
| 1a2q_A | 275 | Subtilisin Bpn' Mutant 7186 Length = 275 | 3e-06 | ||
| 1suc_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 3e-06 | ||
| 1gnv_A | 266 | Calcium Independent Subtilisin Bpn' Mutant Length = | 4e-06 | ||
| 1gns_A | 263 | Subtilisin Bpn' Length = 263 | 4e-06 | ||
| 2b6n_A | 278 | The 1.8 A Crystal Structure Of A Proteinase K Like | 5e-06 | ||
| 1ubn_A | 275 | Selenosubtilisin Bpn Length = 275 | 6e-06 | ||
| 1v5i_A | 275 | Crystal Structure Of Serine Protease Inhibitor Poia | 6e-06 | ||
| 1bh6_A | 274 | Subtilisin Dy In Complex With The Synthetic Inhibit | 8e-06 | ||
| 4dww_A | 275 | Crystal Structure Of Nattokinase From Bacillus Subt | 9e-06 | ||
| 1mee_A | 275 | The Complex Between The Subtilisin From A Mesophili | 1e-05 | ||
| 1scj_A | 275 | Crystal Structure Of Subtilisin-Propeptide Complex | 1e-05 | ||
| 1st2_A | 275 | The Three-Dimensional Structure Of Bacillus Amyloli | 1e-05 | ||
| 2ixt_A | 310 | Sphericase Length = 310 | 6e-05 | ||
| 1r6v_A | 671 | Crystal Structure Of Fervidolysin From Fervidobacte | 7e-05 | ||
| 4dzt_A | 276 | Aqualysin I: The Crystal Structure Of A Serine Prot | 1e-04 | ||
| 1ea7_A | 310 | Sphericase Length = 310 | 2e-04 | ||
| 2z30_A | 320 | Crystal Structure Of Complex Form Between Mat-Tk-Su | 2e-04 | ||
| 2z56_A | 318 | Crystal Structure Of G56s-Propeptide:s324a-Subtilis | 2e-04 | ||
| 3vhq_A | 398 | Crystal Structure Of The Ca6 Site Mutant Of Pro-Sa- | 2e-04 | ||
| 2zwp_A | 398 | Crystal Structure Of Ca3 Site Mutant Of Pro-S324a L | 2e-04 | ||
| 2zwo_A | 398 | Crystal Structure Of Ca2 Site Mutant Of Pro-S324a L | 2e-04 | ||
| 2e1p_A | 398 | Crystal Structure Of Pro-Tk-Subtilisin Length = 398 | 2e-04 | ||
| 2zrq_A | 329 | Crystal Structure Of S324a-Subtilisin Length = 329 | 2e-04 | ||
| 2z2z_A | 395 | Crystal Structure Of Unautoprocessed Form Of Tk-sub | 2e-04 | ||
| 3a3p_A | 329 | Crystal Structure Of Complex Between E201aSA-Subtil | 2e-04 | ||
| 2z2x_A | 318 | Crystal Structure Of Mature Form Of Tk-Subtilisin L | 3e-04 | ||
| 1c3l_A | 274 | Subtilisin-Carlsberg Complexed With Xenon (8 Bar) L | 3e-04 | ||
| 3qtl_A | 274 | Structural Basis For Dual-Inhibition Mechanism Of A | 3e-04 | ||
| 1cse_E | 274 | The High-Resolution X-Ray Crystal Structure Of The | 3e-04 | ||
| 1scn_E | 276 | Inactivation Of Subtilisin Carlsberg By N-(Tert-But | 3e-04 | ||
| 1yu6_A | 275 | Crystal Structure Of The Subtilisin Carlsberg:omtky | 3e-04 | ||
| 4gi3_A | 275 | Crystal Structure Of Greglin In Complex With Subtil | 3e-04 | ||
| 2z2y_A | 318 | Crystal Structure Of Autoprocessed Form Of Tk-Subti | 3e-04 | ||
| 3f7o_A | 284 | Crystal Structure Of Cuticle-degrading Protease Fro | 3e-04 | ||
| 1wmd_A | 434 | Crystal Structure Of Alkaline Serine Protease Kp-43 | 6e-04 | ||
| 1dbi_A | 280 | Crystal Structure Of A Thermostable Serine Protease | 8e-04 | ||
| 1sel_A | 274 | Crystal Structure Of Selenosubtilisin At 2.0-Angstr | 9e-04 |
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936 | Back alignment and structure |
|
| >pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture Length = 269 | Back alignment and structure |
|
| >pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From Streptococcus Length = 926 | Back alignment and structure |
|
| >pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline Protease, Subtilisin Bl, At 1.4 Angstroms Resolution Length = 269 | Back alignment and structure |
|
| >pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18 Structures Length = 269 | Back alignment and structure |
|
| >pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N Length = 269 | Back alignment and structure |
|
| >pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant Length = 269 | Back alignment and structure |
|
| >pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I Length = 269 | Back alignment and structure |
|
| >pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus Lentus Length = 269 | Back alignment and structure |
|
| >pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal Growth Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87) K27rV104YN123ST274A Length = 269 | Back alignment and structure |
|
| >pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275 | Back alignment and structure |
|
| >pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin Bpn(Prime) Through Incremental Changes In The Free Energy Of Unfolding Length = 275 | Back alignment and structure |
|
| >pdb|1AQN|A Chain A, Subtilisin Mutant 8324 Length = 275 | Back alignment and structure |
|
| >pdb|1SUA|A Chain A, Subtilisin Bpn' Length = 266 | Back alignment and structure |
|
| >pdb|1AK9|A Chain A, Subtilisin Mutant 8321 Length = 275 | Back alignment and structure |
|
| >pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6. Crystallization Temperature 20 C Diffraction Temperature- 160 C Length = 266 | Back alignment and structure |
|
| >pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275 | Back alignment and structure |
|
| >pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin Bpn' And Streptomyces Subtilisin Inhibitor At 1.8 Angstroms Resolution Length = 275 | Back alignment and structure |
|
| >pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281 | Back alignment and structure |
|
| >pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186 Length = 275 | Back alignment and structure |
|
| >pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1GNS|A Chain A, Subtilisin Bpn' Length = 263 | Back alignment and structure |
|
| >pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme From A Psychrotroph Serratia Species Length = 278 | Back alignment and structure |
|
| >pdb|1UBN|A Chain A, Selenosubtilisin Bpn Length = 275 | Back alignment and structure |
|
| >pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In Complex With Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N- Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone Length = 274 | Back alignment and structure |
|
| >pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis Natto Length = 275 | Back alignment and structure |
|
| >pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic Bacterium And The Leech Inhibitor Eglin-C Length = 275 | Back alignment and structure |
|
| >pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex Length = 275 | Back alignment and structure |
|
| >pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus Amyloliquefaciens Subtilisin At 1.8 Angstroms And An Analysis Of The Structural Consequences Of Peroxide Inactivation Length = 275 | Back alignment and structure |
|
| >pdb|2IXT|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium Pennivorans, A Keratinolytic Enzyme Related To Subtilisin Length = 671 | Back alignment and structure |
|
| >pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease From An Extreme Thermophile, Thermus Aquaticus Yt-1 Length = 276 | Back alignment and structure |
|
| >pdb|1EA7|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between Mat-Tk-Subtilisin And Tk- Propeptide Length = 320 | Back alignment and structure |
|
| >pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin Complex Length = 318 | Back alignment and structure |
|
| >pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of Pro-Sa-Subtilisin Length = 398 | Back alignment and structure |
|
| >pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a Length = 398 | Back alignment and structure |
|
| >pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a Length = 398 | Back alignment and structure |
|
| >pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin Length = 398 | Back alignment and structure |
|
| >pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin Length = 329 | Back alignment and structure |
|
| >pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin Soaked By 10mm Cacl2 Length = 395 | Back alignment and structure |
|
| >pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin And Tk-Propeptide Length = 329 | Back alignment and structure |
|
| >pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin Length = 318 | Back alignment and structure |
|
| >pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar) Length = 274 | Back alignment and structure |
|
| >pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A Non-Classical Kazal-Type Serine Protease Inhibitor From Horseshoe Crab In Complex With Subtilisin Length = 274 | Back alignment and structure |
|
| >pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex Formed Between Subtilisin Carlsberg And Eglin C, An Elastase Inhibitor From The Leech Hirudo Medicinalis. Structural Analysis, Subtilisin Structure And Interface Geometry Length = 274 | Back alignment and structure |
|
| >pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By N-(Tert-Butoxycarbonyl-Alanyl- Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation Of Covalent Enzyme-Inhibitor Linkage In The Form Of A Carbamate Derivative Length = 276 | Back alignment and structure |
|
| >pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3 Complex Length = 275 | Back alignment and structure |
|
| >pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin Length = 275 | Back alignment and structure |
|
| >pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin Length = 318 | Back alignment and structure |
|
| >pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From Paecilomyces Lilacinus (pl646) Length = 284 | Back alignment and structure |
|
| >pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K) Length = 434 | Back alignment and structure |
|
| >pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease Length = 280 | Back alignment and structure |
|
| >pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms Resolution Length = 274 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 604 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 0.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 0.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 1e-144 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 2e-27 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 1e-24 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 2e-21 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 2e-24 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 4e-20 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 5e-23 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 7e-19 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 6e-23 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 9e-19 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 7e-23 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 2e-19 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 4e-22 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 6e-19 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 6e-20 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 1e-17 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 1e-19 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 2e-12 | |
| 4aks_A | 360 | PATG, thiazoline oxidase/subtilisin-like protease; | 2e-19 | |
| 4aks_A | 360 | PATG, thiazoline oxidase/subtilisin-like protease; | 2e-14 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 1e-18 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 1e-16 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 1e-18 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 3e-13 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 3e-18 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 3e-16 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 5e-18 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 6e-16 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 1e-17 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 6e-14 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 7e-17 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 2e-16 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 9e-17 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 5e-10 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 1e-16 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 2e-13 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 4e-16 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 9e-10 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 7e-16 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 1e-10 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 8e-16 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 5e-10 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 6e-15 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 2e-10 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 1e-14 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 6e-14 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 2e-13 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 1e-09 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 7e-13 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 3e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-09 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 6e-07 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 7e-05 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 2e-06 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 2e-06 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 6e-06 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 1e-04 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 607 bits (1567), Expect = 0.0
Identities = 231/604 (38%), Positives = 325/604 (53%), Gaps = 25/604 (4%)
Query: 1 TSKDFPASACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLV 60
F AS CN+K+IGA F +G + S RDT+GHGTH AS AG+
Sbjct: 60 PGTQFNASMCNRKLIGANYFNKGILANDP---TVNITMNSARDTDGHGTHCASITAGNFA 116
Query: 61 SNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGAS 120
S F YA G ARG+A +AR+AVYK ++ G F SD++AAMDQA+ADGVD+IS+S
Sbjct: 117 KGVSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISY--G 174
Query: 121 GYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPA 180
+D+I+I SFGA GV+VS SAGN GPG + N +PWIL V + DR F
Sbjct: 175 YRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAG 234
Query: 181 DAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGG 240
LG+G G SL+ + ++Y D + + IV+CD G
Sbjct: 235 TLTLGNGLKIRGWSLFPARAFVRD-SPVIYNKTLSDCSSEELLSQVENPENTIVICDDNG 293
Query: 241 NARVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYP 300
+ ++ + A I + D + + P +V G ++ Y+K S P
Sbjct: 294 DFS-DQMRIITRARLKAAIFISED--PGVFRSATFPNPGVVVNKKEGKQVINYVKNSVTP 350
Query: 301 TATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDL 360
TATI F+ T + + PAP VAA S+RGP+ I KPD++APGV ILAA+ + T +
Sbjct: 351 TATITFQETYL-DTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSI 409
Query: 361 EIDPRR-VDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENI 419
+ D+ + SGTSM+ PH +G+AA+L+ A+P+WSP+AI+SA+MTTA LDN+ + I
Sbjct: 410 GTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPI 469
Query: 420 KDLASGEESTPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDVKRISVFVREPV 479
KD + + +TP GAGHVDPNRAL+PGLVYD +YV LCS+ + ++ R
Sbjct: 470 KDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSA 529
Query: 480 SSDICTRALATPGNLNYPSFSVVFNSNNDV----VKYKRVVKNVGSSVDAVYEVKVNAPP 535
+LNYPSF +++ + K+KR V NVG A Y+ K+ AP
Sbjct: 530 ----SHNCSNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVG-KGAATYKAKLKAPK 584
Query: 536 NVAVNVWPSKLAFSAEKKALAYEITFSSVGLDGLGVSPQQSGSIEW--SDGVHLVRSPIA 593
N ++V P L F + + +Y +T +G +G + GSI W +G H VRSPI
Sbjct: 585 NSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRN---VGSITWVEQNGNHSVRSPIV 641
Query: 594 VRWI 597
I
Sbjct: 642 TSPI 645
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 585 bits (1508), Expect = 0.0
Identities = 230/601 (38%), Positives = 323/601 (53%), Gaps = 49/601 (8%)
Query: 6 PASACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASL 65
CN+KIIGAR+++ G + PRDT GHGTHTASTAAG LVS A+L
Sbjct: 60 NNFRCNRKIIGARSYHIGRPI-------SPGDVNGPRDTNGHGTHTASTAAGGLVSQANL 112
Query: 66 FDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGASGYAPQ 125
+ G ARG ARIA YK+CW+ GC D+DILAA D AIADGVD+ISLSVG
Sbjct: 113 YGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVG-GANPRH 171
Query: 126 YDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPADAILG 185
Y D+IAIGSF A + G++ S SAGN GP FT +++PW+L+V AST+DR+F +G
Sbjct: 172 YFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIG 231
Query: 186 DGRIFGGVSLYAGESLPDFKLHLVYGGD--------CGDRFCYMGRLEPSKVQGKIVVCD 237
+G+ F GVS+ ++ LV G D RFC + P+ ++GKIVVC+
Sbjct: 232 NGQSFQGVSINTFDNQY---YPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCE 288
Query: 238 RGGNARVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLS 297
K G +L ++ ADS+ +P++++ YI
Sbjct: 289 ASFGPH----EFFKSLDGAAGVLMTSNTRD---YADSYPLPSSVLDPNDLLATLRYIYSI 341
Query: 298 QYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGP 357
+ P ATI T+ + AP V +FSSRGPN T +++KPD+ PGV ILAAW
Sbjct: 342 RSPGATIFKSTTI--LNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPV 399
Query: 358 TDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGE 417
R FNIISGTSMSCPH++G+A ++ P WSPAAIKSALMTTA ++
Sbjct: 400 GG---IRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFN 456
Query: 418 NIKDLASGEESTPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDVKRISVFVRE 477
F +G+GHV+P +A+ PGLVYD + S+YV FLC GY+ + + +
Sbjct: 457 PQ---------AEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGD 507
Query: 478 PVSSDICTRALATPGNLNYPSFSVVFNSN-NDVVKYKRVVKNVGSSVDAVYEVKVNAPPN 536
+ + +LNYPSF + + + + R + +V + Y ++AP
Sbjct: 508 YSAC--TSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQ-ASTYRAMISAPQG 564
Query: 537 VAVNVWPSKLAFSAEKKALAYEITFSSVGLDGLGVSPQQSGSIEWSDGVHLVRSPIAVRW 596
+ ++V P+ L+F+ ++ +T + S S+ WSDGVH VRSPI +
Sbjct: 565 LTISVNPNVLSFNGLGDRKSFTLTVRGSIKGFV-----VSASLVWSDGVHYVRSPITITS 619
Query: 597 I 597
+
Sbjct: 620 L 620
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 441 bits (1134), Expect = e-144
Identities = 110/581 (18%), Positives = 190/581 (32%), Gaps = 75/581 (12%)
Query: 2 SKDFPASACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVS 61
N K+ + + + HGTH + +G
Sbjct: 58 HGITYGEWVNDKVAYYHDYSKDG---------------KTAVDQEHGTHVSGILSG---- 98
Query: 62 NASLFDYARGEARGMAVKARIAVYKICWSPGC--FDSDILAAMDQAIADGVDVISLSVGA 119
NA G +A++ + ++ G + + A+ AI G VI++S G
Sbjct: 99 NAPSETKEPYRLEGAMPEAQLLLMRVEIVNGLADYARNYAQAIRDAINLGAKVINMSFGN 158
Query: 120 SGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFT---------------ATNIAP 164
+ A D A GV + SAGN A
Sbjct: 159 AALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAAD 218
Query: 165 WILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRL 224
LTV + + D++ + + + D
Sbjct: 219 STLTVASYSPDKQLTETVRVKTADQQDKEMPVLSTNRFE----PNKAYDYAYANRGTKED 274
Query: 225 EPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEEL-IADSHLIPATMVG 283
+ V+GKI + +RG +K A K AG +G+++ + + G + + + +PA +
Sbjct: 275 DFKDVKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFIS 334
Query: 284 AIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAP 343
G +++ + T T V+ P+ K++ FSS G + +KPD+ AP
Sbjct: 335 RKDGLLLKDNPQ----KTITFNATPKVL-PTASGTKLSRFSSWGLTA--DGNIKPDIAAP 387
Query: 344 GVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKS 403
G +IL++ + + +SGTSMS P V+G+ LL+K Y P S
Sbjct: 388 GQDILSSVANN-------------KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPS 434
Query: 404 ALMTTAYN-LDNSGENIKDLASGEESTPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLC 462
+ A L +S + D +P GAG VD +A + + + +
Sbjct: 435 ERLDLAKKVLMSSATALYDEDEKAYFSPRQQGAGAVDAKKASAATMY--VTDKDNTSSKV 492
Query: 463 SIGYDVKRISVFVREPVSSDICTRALATPGNLNYPSFSVVFNSNNDVVKYKRVVKNVGSS 522
+ + V V SD P L Y + + V S
Sbjct: 493 HLNNVSDKFEVTVNVHNKSD-------KPQELYYQATVQTDKVDGKHFALAPKVLYETSW 545
Query: 523 VDAVYEVKVNAPPNVAVNVWPSKLAFSAEKKALAYEITFSS 563
++ + A + V V FS + A F
Sbjct: 546 ----QKITIPANSSKQVTVPIDASRFSKDLLAQMKNGYFLE 582
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 2e-27
Identities = 75/436 (17%), Positives = 141/436 (32%), Gaps = 81/436 (18%)
Query: 32 IDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAV--KARIAVYKICW 89
T P + HGTH A T A G G+ A I + K+
Sbjct: 50 NSGTGNWYQPGNNNAHGTHVAGTIAAI--------ANNEGVV-GVMPNQNANIHIVKVFN 100
Query: 90 SPGC-FDSDILAAMDQAI-ADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSC 147
G + S ++AA+D + + G +V+++S+G SG A+ + +GV++
Sbjct: 101 EAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERN---ALNT--HYNNGVLLIA 155
Query: 148 SAGNSGPGPFTATNIAPWILTVGASTIDREF--------------PADAILGDGRIFGGV 193
+AGN+G ++ +++V A + + P +AIL + G
Sbjct: 156 AAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEGR 215
Query: 194 SLYAGESLPDFKLHLVYGGDCGDRFC--YMGRLEPSKVQGKIVVCDRGGNARVEKGAAVK 251
+ + V + Y + G + C G + A K
Sbjct: 216 LADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANK 275
Query: 252 LAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVI 311
+ + + A + + + + +
Sbjct: 276 ICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANS----DITV 331
Query: 312 SPS--PPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDF 369
A +A + G ++ V G D+
Sbjct: 332 PSVSVDRATGLALKAKLGQST--------TVSNQGNQ---------------------DY 362
Query: 370 NIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEEST 429
+GTSM+ PHVSG+A L+ +P+ S + +++AL TA +L +G + +
Sbjct: 363 EYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAGRDNQ--------- 413
Query: 430 PFIHGAGHVDPNRALN 445
G G ++ A
Sbjct: 414 ---TGYGMINAVAAKA 426
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 1e-24
Identities = 45/244 (18%), Positives = 84/244 (34%), Gaps = 40/244 (16%)
Query: 312 SPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNI 371
V ++SR P V APG I + + +
Sbjct: 411 MREKLPGNVYTWTSRDPCIDGG--QGVTVCAPGGAIASVPQFTMS-----------KSQL 457
Query: 372 ISGTSMSCPHVSGLAAL----LRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEE 427
++GTSM+ PHV+G AL L++ ++SP +IK A+ TA L
Sbjct: 458 MNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYVD----------- 506
Query: 428 STPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDVKRISVFVREPVSSDICTRA 487
PF G G ++ +A + + F +G + + + +R+ V +
Sbjct: 507 --PFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADK-GIHLRQGV----QRNS 559
Query: 488 LATPGNLNYPSFSVVFNSNNDVVKYKRVVKNVGSSVDAV----YEVKVNAPPNVAVNVWP 543
+ + ++ D + + + +S V + ++AV V P
Sbjct: 560 IDYNVYIEPIFYNDKEADPKDKFNFNVRLNLI-ASQPWVQCGAFLDLSYGTRSIAVRVDP 618
Query: 544 SKLA 547
+ L
Sbjct: 619 TGLQ 622
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 98.4 bits (244), Expect = 2e-21
Identities = 36/153 (23%), Positives = 61/153 (39%), Gaps = 22/153 (14%)
Query: 33 DETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKIC-WSP 91
DE + + HGTH +S A+G+ ++ + G+A A+I I
Sbjct: 258 DEGNVLEVVGMSSPHGTHVSSIASGN---------HSSRDVDGVAPNAKIVSMTIGDGRL 308
Query: 92 GCFD--SDILAAMDQAI-----ADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVV 144
G + + ++ AM + + +DVI++S G + + ++GVV
Sbjct: 309 GSMETGTALVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGELMNEV-VNKYGVV 367
Query: 145 VSCSAGNSGPGPFT----ATNIAPWILTVGAST 173
SAGN GP T P ++ VGA
Sbjct: 368 WVASAGNHGPALCTVGTPPDISQPSLIGVGAYV 400
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-24
Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 17/141 (12%)
Query: 319 KVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMS 378
+ FSSRGP + LKP+V+APG I+AA T D + GT+M+
Sbjct: 308 VITDFSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSMGQPIND----YYTAAPGTAMA 361
Query: 379 CPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHV 438
PHV+G+AALL +A+P W+P +K+AL+ TA + +E +GAG V
Sbjct: 362 TPHVAGIAALLLQAHPSWTPDKVKTALIETADIV-----------KPDEIADIAYGAGRV 410
Query: 439 DPNRALNPGLVYDIDVSEYVA 459
+ +A + + YV+
Sbjct: 411 NAYKAAYYDNYAKLTFTGYVS 431
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 93.4 bits (232), Expect = 4e-20
Identities = 51/150 (34%), Positives = 77/150 (51%), Gaps = 16/150 (10%)
Query: 33 DETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG 92
D +P D GHGTH AS AAG+ ++ G+ +GMA A++ K+ G
Sbjct: 166 DFVNGKTTPYDDNGHGTHVASIAAGTGAAS-------NGKYKGMAPGAKLVGIKVLNGQG 218
Query: 93 -CFDSDILAAMDQAIAD----GVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSC 147
SDI+ +D A+ + G+ VI+LS+G+S + D S A+ + A G+VV
Sbjct: 219 SGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNN--AWDAGLVVVV 276
Query: 148 SAGNSGPGPFTATN--IAPWILTVGASTID 175
+AGNSGP +T + A ++TVGA
Sbjct: 277 AAGNSGPNKYTVGSPAAASKVITVGAVDKY 306
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 5e-23
Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 21/118 (17%)
Query: 316 PAPKVAAFSSRGPNSLTAEIL----KPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNI 371
+VA +SSRG S + + ++ APG ++ + W +N
Sbjct: 199 GTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNGG-------------YNT 245
Query: 372 ISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGEN----IKDLASG 425
ISGTSM+ PHVSGLAA + P S ++S L A ++D G D ASG
Sbjct: 246 ISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIGDDYASG 303
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 7e-19
Identities = 41/159 (25%), Positives = 60/159 (37%), Gaps = 20/159 (12%)
Query: 33 DETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG 92
T + S D GHGTH A TA S+ G+A A + YK+ G
Sbjct: 57 ATTPINNSCTDRNGHGTHVAGTALADGGSDQ-------AGIYGVAPDADLWAYKVLLDSG 109
Query: 93 -CFDSDILAAMDQAIADGV-----DVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVS 146
+ DI AA+ A +IS+S+G+S A+ A GV++
Sbjct: 110 SGYSDDIAAAIRHAADQATATGTKTIISMSLGSSANNSLISS---AVNY--AYSKGVLIV 164
Query: 147 CSAGNSGPGPFTATN--IAPWILTVGASTIDREFPADAI 183
+AGNSG T P + V A ++ +
Sbjct: 165 AAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNGTYRV 203
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 6e-23
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 36/127 (28%)
Query: 319 KVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMS 378
+ A+FSS GP + DV+APGV+I + G+ + +GTSM+
Sbjct: 185 QRASFSSVGP--------ELDVMAPGVSIQSTLPGNK-------------YGAYNGTSMA 223
Query: 379 CPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHV 438
PHV+G AAL+ +P+W+ ++S+L T L +S +G G +
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFY---------------YGKGLI 268
Query: 439 DPNRALN 445
+ A
Sbjct: 269 NVQAAAQ 275
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 9e-19
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 19/146 (13%)
Query: 37 ESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGC-FD 95
E+ +D HGTH A T A + + G G+A A + K+ + G
Sbjct: 54 ETNPFQDNNSHGTHVAGTVAAL--------NNSIGVL-GVAPSASLYAVKVLGADGSGQY 104
Query: 96 SDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPG 155
S I+ ++ AIA+ +DVI++S+G + A+ A GVVV +AGN G
Sbjct: 105 SWIINGIEWAIANNMDVINMSLGGPSGSAALKA---AVDK--AVASGVVVVAAAGNEGTS 159
Query: 156 PFTATNI----APWILTVGASTIDRE 177
++T P ++ VGA +
Sbjct: 160 GSSSTVGYPGKYPSVIAVGAVDSSNQ 185
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 7e-23
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 36/126 (28%)
Query: 319 KVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMS 378
A+FSS G + +V+APG + + + +T + ++GTSM+
Sbjct: 184 NRASFSSVGA--------ELEVMAPGAGVYSTYPTNT-------------YATLNGTSMA 222
Query: 379 CPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHV 438
PHV+G AAL+ +P+ S + +++ L +TA L +S +G G +
Sbjct: 223 SPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSSFY---------------YGKGLI 267
Query: 439 DPNRAL 444
+ A
Sbjct: 268 NVEAAA 273
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 87.2 bits (217), Expect = 2e-19
Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 19/151 (12%)
Query: 32 IDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSP 91
D GHGTH A T A D G G+A + K+ S
Sbjct: 48 ASFVAGEAYNTDGNGHGTHVAGTVAAL--------DNTTGVL-GVAPSVSLYAVKVLNSS 98
Query: 92 GC-FDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAG 150
G S I++ ++ A +G+DVI++S+G + + Q A+ + A GVVV +AG
Sbjct: 99 GSGSYSGIVSGIEWATTNGMDVINMSLGGASGSTAMKQ---AVDN--AYARGVVVVAAAG 153
Query: 151 NSGPGPFTATNI----APWILTVGASTIDRE 177
NSG T T ++ VGA +
Sbjct: 154 NSGNSGSTNTIGYPAKYDSVIAVGAVDSNSN 184
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 4e-22
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 36/126 (28%)
Query: 319 KVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMS 378
A+FS G D++APGVN+ + + GST + ++GTSM+
Sbjct: 179 NRASFSQYGA--------GLDIVAPGVNVQSTYPGST-------------YASLNGTSMA 217
Query: 379 CPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHV 438
PHV+G AAL+++ P WS I++ L TA +L ++ +G+G V
Sbjct: 218 TPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNL---------------YGSGLV 262
Query: 439 DPNRAL 444
+ A
Sbjct: 263 NAEAAT 268
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 6e-19
Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 15/147 (10%)
Query: 32 IDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSP 91
S +D GHGTH A T A + + G G+A A + K+ +
Sbjct: 47 ASFVPGEPSTQDGNGHGTHVAGTIAAL--------NNSIGVL-GVAPSAELYAVKVLGAS 97
Query: 92 G-CFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAG 150
G S I ++ A +G+ V +LS+G+ + +Q A+ S A GV+V ++G
Sbjct: 98 GSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQ---AVNS--ATSRGVLVVAASG 152
Query: 151 NSGPGPFTATNIAPWILTVGASTIDRE 177
NSG G + + VGA+ +
Sbjct: 153 NSGAGSISYPARYANAMAVGATDQNNN 179
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 91.9 bits (228), Expect = 6e-20
Identities = 45/155 (29%), Positives = 67/155 (43%), Gaps = 20/155 (12%)
Query: 302 ATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLE 361
AT R + S + VA FSSRGP +KPDV+APG IL+A + P
Sbjct: 184 ATENLRPSFGSYADNINHVAQFSSRGPT--KDGRIKPDVMAPGTFILSARSSLA-PDSSF 240
Query: 362 IDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDW-----SPAAIKSALMTTAYNLDNSG 416
+ + GTSM+ P V+G A LR+ + P+ +K+AL+ A ++
Sbjct: 241 WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLGY 300
Query: 417 ENIKDLASGEESTPFIHGAGHVDPNRALNPGLVYD 451
N G G V +++LN V +
Sbjct: 301 PN------------GNQGWGRVTLDKSLNVAYVNE 323
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 85.0 bits (210), Expect = 1e-17
Identities = 37/158 (23%), Positives = 61/158 (38%), Gaps = 18/158 (11%)
Query: 37 ESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFD- 95
+ + DT GHGTH A + G+ +GMA +A + I S G
Sbjct: 58 RTNNANDTNGHGTHVAGSVLGNG-----------STNKGMAPQANLVFQSIMDSGGGLGG 106
Query: 96 --SDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSG 153
S++ QA + G + + S G + Y DS + + ++ + + +AGN G
Sbjct: 107 LPSNLQTLFSQAYSAGARIHTNSWG-AAVNGAYTTDSRNVDDY-VRKNDMTILFAAGNEG 164
Query: 154 PGPFTATN--IAPWILTVGASTIDREFPADAILGDGRI 189
P T + A +TVGA+ R +
Sbjct: 165 PNGGTISAPGTAKNAITVGATENLRPSFGSYADNINHV 202
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 92.4 bits (229), Expect = 1e-19
Identities = 52/261 (19%), Positives = 91/261 (34%), Gaps = 29/261 (11%)
Query: 311 ISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAW-----TGSTGPTDLEIDPR 365
+ +VA FSSR V APGV IL+ G G +
Sbjct: 319 LDYYGGTFRVAGFSSRSD--------GVSVGAPGVTILSTVPGEDSIGYEGHNENVPATN 370
Query: 366 RVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASG 425
++ GTSM+ PHV+G+ A+L + +P+ P I+ L TA++ + +G +
Sbjct: 371 GGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGWDHD----- 425
Query: 426 EESTPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDVKRISVFVREPVSSDICT 485
G G V + AL L V E+ + + +VFV + C
Sbjct: 426 -------TGYGLVKLDAALQGPLPTQGGVEEFQVVVTDAKGNFGVPTVFVSMMRDNGSCY 478
Query: 486 RALATPGNL----NYPSFSVVFNSNNDVVKYKRVVKNVGSSVDAVYEVKVNAPPNVAVNV 541
A P + + S + + + G S+ Y + + +
Sbjct: 479 YAKTGPDGIARFPHIDSGTYDIFVGGPDHWDRALAPYDGESIPGGYAIALRMAEERQASF 538
Query: 542 WPSKLAFSAEKKALAYEITFS 562
++ A + + + T
Sbjct: 539 VGFGVSPDATQLNVNFNSTLQ 559
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 69.3 bits (169), Expect = 2e-12
Identities = 35/147 (23%), Positives = 51/147 (34%), Gaps = 30/147 (20%)
Query: 41 PRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCF------ 94
GTH A T A +G G+A A+I I P
Sbjct: 194 SSYGGSAGTHVAGTIAAK--------KDGKGIV-GVAPGAKIMPIVIFDDPALVGGNGYV 244
Query: 95 -DSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSG 153
D + A + A G V++ S G GY+ + A A +HGVV+ SAGN+
Sbjct: 245 GDDYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKE---AFDY--AMEHGVVMVVSAGNNT 299
Query: 154 PGPFTATNIA-----PWILTVGASTID 175
++ P ++ V A
Sbjct: 300 SD----SHHQYPAGYPGVIQVAALDYY 322
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 89.5 bits (222), Expect = 2e-19
Identities = 32/131 (24%), Positives = 50/131 (38%), Gaps = 31/131 (23%)
Query: 319 KVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMS 378
FS+ G N+ K ++APG IL A + P L +GTSM+
Sbjct: 252 TPCHFSNWGGNNT-----KEGILAPGEEILGAQPCTEEPVRL------------TGTSMA 294
Query: 379 CPHVSGLAALLR----KAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHG 434
P ++G++ALL + A+++AL+ TA D P
Sbjct: 295 APVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEVVE----------EPERCL 344
Query: 435 AGHVDPNRALN 445
G V+ A+
Sbjct: 345 RGFVNIPGAMK 355
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 2e-14
Identities = 24/149 (16%), Positives = 46/149 (30%), Gaps = 23/149 (15%)
Query: 38 SKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDS- 96
+K H H ST G G+A R+
Sbjct: 118 TKDRIVLNDHACHVTSTIVGQ----------EHSPVFGIAPNCRVINMPQDAVIRGNYDD 167
Query: 97 -----DILAAMDQAIADGVDVISLSVGASGYAPQYDQ---DSIAIGSFGAAQHGVVVSCS 148
++ A+D A+ G ++I + + ++ +I + V++
Sbjct: 168 VMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGEEILVQAIK----KCQDNNVLIVSP 223
Query: 149 AGNSGPGPFTATNIAPWILTVGASTIDRE 177
GN+ + + P L VGA+ +D
Sbjct: 224 TGNNSNESWCLPAVLPGTLAVGAAKVDGT 252
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 1e-18
Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 38/131 (29%)
Query: 319 KVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMS 378
+++ F++ + D++APGV I + + S + +SGT+M+
Sbjct: 214 RLSDFTNTNE--------EIDIVAPGVGIKSTYLDSG-------------YAELSGTAMA 252
Query: 379 CPHVSGLAALLRKAYPD-----WSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIH 433
PHV+G AL+ D S I + L+ A + + + +
Sbjct: 253 APHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAEG------------N 300
Query: 434 GAGHVDPNRAL 444
G +D +
Sbjct: 301 GFLTLDLVERI 311
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 1e-16
Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 26/157 (16%)
Query: 33 DETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG 92
D + + D GHGTH A T A + + G G+A KA + + K G
Sbjct: 72 DYGGDETNFSDNNGHGTHVAGTVAAA--------ETGSGVV-GVAPKADLFIIKALSGDG 122
Query: 93 C-FDSDILAAMDQAI------ADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVV 145
I A+ A+ + + +I++S+G + + A+ A + V V
Sbjct: 123 SGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHD---AVKY--AVSNNVSV 177
Query: 146 SCSAGNSGPGPFTATNI-----APWILTVGASTIDRE 177
C+AGN G G ++ VGA D
Sbjct: 178 VCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLR 214
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 86.7 bits (215), Expect = 1e-18
Identities = 22/139 (15%), Positives = 41/139 (29%), Gaps = 33/139 (23%)
Query: 307 RGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRR 366
+ S G N + D+ APG NI +
Sbjct: 223 QYRKGETPVLHGGGITGSRFGNNWV-------DIAAPGQNITFLRPDAK----------- 264
Query: 367 VDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGE 426
SGTS + VSG+ A + P + +K L+ +A + + +
Sbjct: 265 --TGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSLVDKVT------ 316
Query: 427 ESTPFIHGAGHVDPNRALN 445
++ +A++
Sbjct: 317 -------EGRVLNAEKAIS 328
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 3e-13
Identities = 24/173 (13%), Positives = 45/173 (26%), Gaps = 35/173 (20%)
Query: 39 KSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG----CF 94
K HGT AS A +R G+ A I+ ++
Sbjct: 81 KKSEALYIHGTAMASLIA------------SRYGIYGVYPHALISSRRVIPDGVQDSWIR 128
Query: 95 DSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSG- 153
+ + + +I++S G G A + + ++ + GN G
Sbjct: 129 AIESIMSNVFLAPGEEKIINISGGQKGVASASVWTELLSRM--GRNNDRLIVAAVGNDGA 186
Query: 154 ----------------PGPFTATNIAPWILTVGASTIDREFPADAILGDGRIF 190
+ ++ V A R+ + G G
Sbjct: 187 DIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQYRKGETPVLHGGGITG 239
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 3e-18
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 37/127 (29%)
Query: 319 KVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMS 378
++FS+ G DV APG +I + + ST + +SGTSM+
Sbjct: 189 NKSSFSTYGSW--------VDVAAPGSSIYSTYPTST-------------YASLSGTSMA 227
Query: 379 CPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHV 438
PHV+G+A LL S + I++A+ TA + +G G V
Sbjct: 228 TPHVAGVAGLLA--SQGRSASNIRAAIENTADKISGTGTYW--------------AKGRV 271
Query: 439 DPNRALN 445
+ +A+
Sbjct: 272 NAYKAVQ 278
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 3e-16
Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 14/147 (9%)
Query: 32 IDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSP 91
D + +P++ GHGTH A AA V+N S G A G A KA I ++ +
Sbjct: 56 WDFVDNDSTPQNGNGHGTHCAGIAAA--VTNNST-----GIA-GTAPKASILAVRVLDNS 107
Query: 92 G-CFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAG 150
G + + + A G VISLS+G + Q A+ A G VV +AG
Sbjct: 108 GSGTWTAVANGITYAADQGAKVISLSLGGTVGNSGLQQ---AVNY--AWNKGSVVVAAAG 162
Query: 151 NSGPGPFTATNIAPWILTVGASTIDRE 177
N+G + V ++ +
Sbjct: 163 NAGNTAPNYPAYYSNAIAVASTDQNDN 189
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 5e-18
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 37/127 (29%)
Query: 319 KVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMS 378
++A+FS+ G DV+APGV+I++ TG+ + +SGTSM+
Sbjct: 190 RLASFSNYGT--------WVDVVAPGVDIVSTITGNR-------------YAYMSGTSMA 228
Query: 379 CPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHV 438
PHV+GLAALL + I+ A+ TA + +G G +
Sbjct: 229 SPHVAGLAALLASQGR--NNIEIRQAIEQTADKISGTGTYF--------------KYGRI 272
Query: 439 DPNRALN 445
+ A+
Sbjct: 273 NSYNAVT 279
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 6e-16
Identities = 42/147 (28%), Positives = 57/147 (38%), Gaps = 14/147 (9%)
Query: 32 IDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSP 91
D + P D HGTH A AA +N + G A GMA RI +
Sbjct: 57 YDFVDNDYDPMDLNNHGTHVAGIAAA--ETNNAT-----GIA-GMAPNTRILAVRALDRN 108
Query: 92 G-CFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAG 150
G SDI A+ A G +VI+LS+G + + A+ A G VV +AG
Sbjct: 109 GSGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLEN---AVNY--AWNKGSVVVAAAG 163
Query: 151 NSGPGPFTATNIAPWILTVGASTIDRE 177
N+G ++ VGA
Sbjct: 164 NNGSSTTFEPASYENVIAVGAVDQYDR 190
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 1e-17
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 48/140 (34%)
Query: 319 KVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMS 378
+A+FS+R P +V APGV+IL+ + + + + GT+M+
Sbjct: 212 NIASFSNRQP----------EVSAPGVDILSTYPDDS-------------YETLMGTAMA 248
Query: 379 CPHVSGLAALLRKAY-------------PDWSPAAIKSALMTTAYNLDNSGENIKDLASG 425
PHVSG+ AL++ AY D S ++ L TA +L +G +
Sbjct: 249 TPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDAD----- 303
Query: 426 EESTPFIHGAGHVDPNRALN 445
+G G V A+
Sbjct: 304 -------YGYGVVRAALAVQ 316
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 6e-14
Identities = 35/166 (21%), Positives = 57/166 (34%), Gaps = 35/166 (21%)
Query: 33 DETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG 92
+ + + D GHGTH T A + G G+A +I ++ + G
Sbjct: 61 KVSTKLRDCADQNGHGTHVIGTIAAL--------NNDIGVV-GVAPGVQIYSVRVLDARG 111
Query: 93 C-FDSDILAAMDQAIAD--------------------GVDVISLSVGASGYAPQYDQDSI 131
SDI ++QAI +VIS+S+G
Sbjct: 112 SGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYD--- 168
Query: 132 AIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDRE 177
I A G+V+ ++GN G + P ++ VGA +
Sbjct: 169 MIIQ--AYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDN 212
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 82.6 bits (204), Expect = 7e-17
Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 30/137 (21%)
Query: 319 KVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVD---------F 369
++ FS+ G N D+ APG + E + + +
Sbjct: 348 NLSEFSNFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNGRY 400
Query: 370 NIISGTSMSCPHVSGLAALLRKAY-PDWSPAAIKSALMTTAYNLDNSGENIKDLASGEES 428
+GT+++ P VSG AL+ Y + P L + +N +
Sbjct: 401 IYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNNKPFS---------- 450
Query: 429 TPFIHGAGHVDPNRALN 445
+G G +D +ALN
Sbjct: 451 ---RYGHGELDVYKALN 464
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 81.1 bits (200), Expect = 2e-16
Identities = 31/167 (18%), Positives = 55/167 (32%), Gaps = 41/167 (24%)
Query: 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDIL 99
D +GHGT + + A G+ G+A + +Y++ S +
Sbjct: 194 DVNDRKGHGTMVSGQTS------------ANGKLIGVAPNNKFTMYRVFGSKKTELLWVS 241
Query: 100 AAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFG-----------AAQHGVVVSCS 148
A+ QA DG VI++SVG+ + D + A + +V +
Sbjct: 242 KAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAA 301
Query: 149 AGNSGPGPFTATNIA------------------PWILTVGASTIDRE 177
AGN G + ++TVG++
Sbjct: 302 AGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVVTVGSTDQKSN 348
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 9e-17
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 19/89 (21%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
++FS+ G D+ APG +I ++W S T N ISGTSM+ P
Sbjct: 188 SSFSNYGTCL--------DIYAPGSSITSSWYTSNSAT-----------NTISGTSMASP 228
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTA 409
HV+G+AAL P+ SPA + + L T A
Sbjct: 229 HVAGVAALYLDENPNLSPAQVTNLLKTRA 257
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 5e-10
Identities = 34/150 (22%), Positives = 57/150 (38%), Gaps = 30/150 (20%)
Query: 33 DETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG 92
D + D GHGTH A T GS G+A + ++ G
Sbjct: 58 DFIDNDYDATDCNGHGTHVAGTIGGSTY--------------GVAKNVNVVGVRVLNCSG 103
Query: 93 -CFDSDILAAMDQAIADGV--DVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSA 149
+S ++A ++ + V ++S+G G + D A+ + A G+ +A
Sbjct: 104 SGSNSGVIAGINWVKNNASGPAVANMSLGG-GASQATDD---AVNA--AVAAGITFVVAA 157
Query: 150 GNSGPGPFTATNI----APWILTVGASTID 175
GN A N A +TVG++T +
Sbjct: 158 GNDNS---NACNYSPARAADAITVGSTTSN 184
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 1e-16
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 48/140 (34%)
Query: 319 KVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMS 378
+A+FS+R P +V APGV+IL+ + + + + GT+M+
Sbjct: 287 NIASFSNRQP----------EVSAPGVDILSTYPDDS-------------YETLMGTAMA 323
Query: 379 CPHVSGLAALLRKAY-------------PDWSPAAIKSALMTTAYNLDNSGENIKDLASG 425
PHVSG+ AL++ AY D S ++ L TA +L +G +
Sbjct: 324 TPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDAD----- 378
Query: 426 EESTPFIHGAGHVDPNRALN 445
+G G V A+
Sbjct: 379 -------YGYGVVRAALAVQ 391
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 2e-13
Identities = 35/166 (21%), Positives = 57/166 (34%), Gaps = 35/166 (21%)
Query: 33 DETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG 92
+ + + D GHGTH T A + G G+A +I ++ + G
Sbjct: 136 KVSTKLRDCADQNGHGTHVIGTIAAL--------NNDIGVV-GVAPGVQIYSVRVLDARG 186
Query: 93 C-FDSDILAAMDQAIAD--------------------GVDVISLSVGASGYAPQYDQDSI 131
SDI ++QAI +VIS+S+G
Sbjct: 187 SGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYD--- 243
Query: 132 AIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDRE 177
I A G+V+ ++GN G + P ++ VGA +
Sbjct: 244 MIIQ--AYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDN 287
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 4e-16
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 19/91 (20%)
Query: 319 KVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMS 378
A+FS+ G D+ APG +I +AW S T ++GTSM+
Sbjct: 184 ARASFSNYGSCV--------DLFAPGASIPSAWYTSDTAT-----------QTLNGTSMA 224
Query: 379 CPHVSGLAALLRKAYPDWSPAAIKSALMTTA 409
PHV+G+AAL + P +PA++ SA++ A
Sbjct: 225 TPHVAGVAALYLEQNPSATPASVASAILNGA 255
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 9e-10
Identities = 36/143 (25%), Positives = 56/143 (39%), Gaps = 30/143 (20%)
Query: 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDI 98
+ +D GHGTH A T G Y G+A + ++ G S +
Sbjct: 63 NGQDCNGHGTHVAGTIGGV--------TY------GVAKAVNLYAVRVLDCNGSGSTSGV 108
Query: 99 LAAMDQAIADGVD--VISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGP 156
+A +D + V ++S+G G + D A+ + + GVV + +AGN
Sbjct: 109 IAGVDWVTRNHRRPAVANMSLGG-GVSTALDN---AVKN--SIAAGVVYAVAAGNDNAN- 161
Query: 157 FTATNI----APWILTVGASTID 175
A N LTVGA+T
Sbjct: 162 --ACNYSPARVAEALTVGATTSS 182
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 79.6 bits (196), Expect = 7e-16
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 29/111 (26%)
Query: 339 DVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSP 398
D+ APG +I+ A + + SGTS + HV+G+AA++ A P+ +
Sbjct: 208 DLFAPGEDIIGASSDCSTCF-----------VSQSGTSQAAAHVAGIAAMMLSAEPELTL 256
Query: 399 AAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALNPGLV 449
A ++ L+ + KD+ I+ A + R L P LV
Sbjct: 257 AELRQRLIHFS---------AKDV---------INEAWFPEDQRVLTPNLV 289
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 1e-10
Identities = 38/171 (22%), Positives = 59/171 (34%), Gaps = 36/171 (21%)
Query: 16 GARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARG 75
R +E+ E D T + + HGTH A +G D G
Sbjct: 45 EGRVMVTDFENVPEE--DGTRFHRQASKCDSHGTHLAGVVSGR--------DA------G 88
Query: 76 MAVKARIAVYKICWSPG-CFDSDILAAMDQAIAD------GVDVISLSVGASGYAPQYDQ 128
+A A + ++ G S L ++ G V+ L + GY+ +
Sbjct: 89 VAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLA-GGYSRVLNA 147
Query: 129 DSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNI----APWILTVGASTID 175
A A+ GVV+ +AGN A AP ++TVGA+
Sbjct: 148 ---ACQR--LARAGVVLVTAAGNFRDD---ACLYSPASAPEVITVGATNAQ 190
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 8e-16
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 21/89 (23%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
++FS+ G D+ APG I +AW + ISGTSM+ P
Sbjct: 186 SSFSNWGSCV--------DLFAPGSQIKSAWYDG-------------GYKTISGTSMATP 224
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTA 409
HV+G+AAL + +P + L + A
Sbjct: 225 HVAGVAALYLQENNGLTPLQLTGLLNSRA 253
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 5e-10
Identities = 38/151 (25%), Positives = 56/151 (37%), Gaps = 30/151 (19%)
Query: 32 IDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSP 91
D + D GHGTH A T GS G+A I ++
Sbjct: 55 YDFVDNDADSSDCNGHGTHVAGTIGGSQY--------------GVAKNVNIVGVRVLSCS 100
Query: 92 G-CFDSDILAAMDQAIADGV--DVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCS 148
G S +++ +D + V ++S+G G + D A+ A Q GV +
Sbjct: 101 GSGTTSGVISGVDWVAQNASGPSVANMSLGG-GQSTALDS---AVQG--AIQSGVSFMLA 154
Query: 149 AGNSGPGPFTATNI----APWILTVGASTID 175
AGNS A N P +TVG++T
Sbjct: 155 AGNSNAD---ACNTSPARVPSGVTVGSTTSS 182
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 77.3 bits (190), Expect = 6e-15
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 11/71 (15%)
Query: 339 DVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSP 398
D+ APG +I+ A + + SGTS + HV+G+AA++ A P+ +
Sbjct: 360 DLFAPGEDIIGASSDCSTCF-----------VSQSGTSQAAAHVAGIAAMMLSAEPELTL 408
Query: 399 AAIKSALMTTA 409
A ++ L+ +
Sbjct: 409 AELRQRLIHFS 419
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 2e-10
Identities = 38/172 (22%), Positives = 60/172 (34%), Gaps = 38/172 (22%)
Query: 16 GARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARG 75
R +E+ E D T + + HGTH A +G D G
Sbjct: 197 EGRVMVTDFENVPEE--DGTRFHRQASKCDSHGTHLAGVVSGR--------DA------G 240
Query: 76 MAVKARIAVYKI--CWSPGCFDSDILAAMDQAIADGVD------VISLSVGASGYAPQYD 127
+A A + ++ C G S L ++ + V+ L + GY+ +
Sbjct: 241 VAKGASMRSLRVLNCQGKG-TVSGTLIGLEFIRKSQLVQPVGPLVVLLPLA-GGYSRVLN 298
Query: 128 QDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNI----APWILTVGASTID 175
A A+ GVV+ +AGN A AP ++TVGA+
Sbjct: 299 A---ACQR--LARAGVVLVTAAGNFRD---DACLYSPASAPEVITVGATNAQ 342
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 1e-14
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 31/131 (23%)
Query: 319 KVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMS 378
A+FS+ G + D+ APG +IL+ T P ++ ++GTSM+
Sbjct: 233 IRASFSNYGVD--------VDLAAPGQDILSTVDSGTRR------PVSDAYSFMAGTSMA 278
Query: 379 CPHVSGLAALL----RKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHG 434
PHVSG+AAL+ + +PA +K L++T + G
Sbjct: 279 TPHVSGVAALVISAANSVNKNLTPAELKDVLVSTT----------SPFNGRLDRA---LG 325
Query: 435 AGHVDPNRALN 445
+G VD A+N
Sbjct: 326 SGIVDAEAAVN 336
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 6e-14
Identities = 40/157 (25%), Positives = 62/157 (39%), Gaps = 29/157 (18%)
Query: 33 DETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG 92
+ K D+ HG+H A T A + G A G+A A++ + G
Sbjct: 90 GRPDPRKERSDSSWHGSHVAGTIAAVT-------NNRIGVA-GVAYGAKVVPVRALGRCG 141
Query: 93 CFDSDILAAMDQAI----------ADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHG 142
+DSDI + A + VI++S+G+ G Q I A + G
Sbjct: 142 GYDSDISDGLYWAAGGRIAGIPENRNPAKVINMSLGSDGQCSYNAQTMID----RATRLG 197
Query: 143 VVVSCSAGNSGPGPFTATNIAP----WILTVGASTID 175
+V +AGN A+N P +L+VGA+T
Sbjct: 198 ALVVVAAGNENQN---ASNTWPTSCNNVLSVGATTSR 231
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 22/91 (24%)
Query: 319 KVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMS 378
+ FS+ G D+ APG +I + W G N ISGTSM+
Sbjct: 189 VRSTFSNYGRVV--------DIFAPGTSITSTWIGG-------------RTNTISGTSMA 227
Query: 379 CPHVSGLAALLRKAYPDWSPAAIKSALMTTA 409
PH++GLAA L S A+ + T +
Sbjct: 228 TPHIAGLAAYLFGLEGG-SAGAMCGRIQTLS 257
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 1e-09
Identities = 42/148 (28%), Positives = 57/148 (38%), Gaps = 35/148 (23%)
Query: 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDI 98
+ RD GHGTH A T G+A K I K+ G S+I
Sbjct: 63 TARDGHGHGTHCAGTIGSKTW--------------GVAKKVSIFGVKVLDDSGSGSLSNI 108
Query: 99 LAAMDQAIADGVD-------VISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGN 151
+A MD +D V S+S+G GY+ +Q A GV V+ +AGN
Sbjct: 109 IAGMDFVASDRQSRNCPRRTVASMSLGG-GYSAALNQ---AAAR--LQSSGVFVAVAAGN 162
Query: 152 SGPGPFTATNI----APWILTVGASTID 175
A N P + TVGA+ +
Sbjct: 163 DNR---DAANTSPASEPTVCTVGATDSN 187
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 7e-13
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 22/89 (24%)
Query: 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCP 380
++FS+ G D+ PG +IL+ W G ISGTSM+ P
Sbjct: 190 SSFSNYGSVL--------DIFGPGTDILSTWIGG-------------STRSISGTSMATP 228
Query: 381 HVSGLAALLRKAYPDWSPAAIKSALMTTA 409
HV+GLAA L + A+ + TA
Sbjct: 229 HVAGLAAYLM-TLGKTTAASACRYIADTA 256
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 3e-09
Identities = 43/148 (29%), Positives = 58/148 (39%), Gaps = 35/148 (23%)
Query: 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDI 98
S RD GHGTH A T G+A K ++ K+ G S I
Sbjct: 62 SSRDGNGHGTHCAGTVGSRTY--------------GVAKKTQLFGVKVLDDNGSGQYSTI 107
Query: 99 LAAMDQAIADGVD-------VISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGN 151
+A MD +D + V SLS+G GY+ + A GV+V+ +AGN
Sbjct: 108 IAGMDFVASDKNNRNCPKGVVASLSLGG-GYSSSVNS---AAAR--LQSSGVMVAVAAGN 161
Query: 152 SGPGPFTATNI----APWILTVGASTID 175
+ A N P + TVGAS
Sbjct: 162 NNA---DARNYSPASEPSVCTVGASDRY 186
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 2e-09
Identities = 88/560 (15%), Positives = 163/560 (29%), Gaps = 197/560 (35%)
Query: 147 CSAGNSGPGPFTATNIAP---WILT-VGASTIDREFPA-------DAILGDGRIFGGVSL 195
S F + ++++ + D + D ++F ++
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 196 YAGESLPDFKLHL----------VYGGDCGDRFCYMGRLEPSKVQGKIV----VCDRGGN 241
+ + L + G + GK VC +
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDG---------VLGS------GKTWVALDVCL---S 173
Query: 242 ARVEKGAAVKLAGG---LGMILANTDESGEELIAD-------------SHLIPATMVGAI 285
+V+ K+ L + N+ E+ E++ H +
Sbjct: 174 YKVQC----KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 286 AGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFS--------SRGP---NSLTAE 334
++R +K Y +V V + AF+ +R + L+A
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLN-VQNAK----AWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 335 ILKPDVIAP---------GVNILAAWTGSTGPTDL-----EIDPRRVDFNIISGTSMSC- 379
+ ++L + P DL +PRR+ +II S+
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLD-CRPQDLPREVLTTNPRRL--SII-AESIRDG 340
Query: 380 -------PHV----------SGLAAL----LRKAYPDWS--P--AAIKSALMTTAYNLDN 414
HV S L L RK + S P A I + L++ + D
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF-DV 399
Query: 415 SGENIKDLAS-----------GEESTPFIHG-----AGHVDPNRALNPGLV--------Y 450
++ + + +EST I ++ AL+ +V +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 451 DID------VSEYVAFLCSIGYDVKRISV---------------FVREPVSSDICTRALA 489
D D + +Y F IG+ +K I F+ + + R +
Sbjct: 460 DSDDLIPPYLDQY--FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI------RHDS 511
Query: 490 TPGNLNYPSFSVVFNSNNDVVKYKR-VVKNVGSSVDAVYEVKVNA----PPNVAVNVWPS 544
T N + + + + YK + N D YE VNA P + N+ S
Sbjct: 512 TAWNASGSILNTL----QQLKFYKPYICDN-----DPKYERLVNAILDFLPKIEENLICS 562
Query: 545 K------LAFSAEKKALAYE 558
K +A AE +A+ E
Sbjct: 563 KYTDLLRIALMAEDEAIFEE 582
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 6e-07
Identities = 20/106 (18%), Positives = 43/106 (40%), Gaps = 4/106 (3%)
Query: 343 PGVNILAAWTGSTGPTDLEI---DPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPA 399
+ LA S + +I D R+ +GTS S P +G+ AL +A + +
Sbjct: 225 ACSSTLATTYSSGNQNEKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWR 284
Query: 400 AIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALN 445
++ ++ T+ + ++ G + + +G G +D +
Sbjct: 285 DMQHLVVQTSKPAHLNADDWATNGVGRKVSHS-YGYGLLDAGAMVA 329
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 7e-05
Identities = 28/192 (14%), Positives = 61/192 (31%), Gaps = 27/192 (14%)
Query: 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDIL 99
+ + HGT A A +N G+A ARI ++ +D +
Sbjct: 80 TQMNDNRHGTRCAGEVAAV-ANNG-------VCGVGVAYNARIGGVRMLDGEV---TDAV 128
Query: 100 AAMDQAIA-DGVDVISLSVGASGY------APQYDQDSIAIG-SFGAAQHGVVVSCSAGN 151
A + + + + S S G + +++ G S G G + ++GN
Sbjct: 129 EARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGN 188
Query: 152 SG----PGPFTATNIAPWILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLH 207
G + + L++ ++T P + + Y+ + + ++
Sbjct: 189 GGREHDSCNCDGYTNSIYTLSISSATQFGNVPWYSEACSS---TLATTYSSGNQNEKQIV 245
Query: 208 LVY-GGDCGDRF 218
C +
Sbjct: 246 TTDLRQKCTESH 257
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} Length = 194 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 2e-06
Identities = 29/149 (19%), Positives = 51/149 (34%), Gaps = 8/149 (5%)
Query: 161 NIAPWILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCY 220
N++ + G + E + + G V+ G +P + + F
Sbjct: 38 NVSWRVPHTGVNRTVWELSEEGVYGQDSPLEPVA---GVLVPPDGPGALNACNPHTNFTV 94
Query: 221 MGRLEPSKVQGKIVVCDRGGN-ARVEKGAAVKLAGGLGMILANTDESGEELIADSHL--- 276
+ + + RGG +K G G ++ N + E+I SH
Sbjct: 95 PTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAV 154
Query: 277 -IPATMVGAIAGDKIREYIKLSQYPTATI 304
I A M+G + G KI + I+ T I
Sbjct: 155 DIVAIMIGNLKGTKILQSIQRGIQVTMVI 183
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 2e-06
Identities = 16/84 (19%), Positives = 37/84 (44%)
Query: 363 DPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDL 422
D N GTS + P +G+ LL +A P+ + ++ + +A L+ + +
Sbjct: 259 DINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRD 318
Query: 423 ASGEESTPFIHGAGHVDPNRALNP 446
++ + +G G +D ++ +
Sbjct: 319 SAMGKKYSHRYGFGKIDAHKLIEM 342
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 6e-06
Identities = 27/159 (16%), Positives = 46/159 (28%), Gaps = 21/159 (13%)
Query: 32 IDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSP 91
D T K + HGT A A + G+ A+I+ +I
Sbjct: 85 NDNTNLPKPRLSDDYHGTRCAGEIAA--KKGNNF------CGVGVGYNAKISGIRILSGD 136
Query: 92 GCFDSDILAAMDQAIADGVDVISLSVGASGY------APQYDQDSIAIGSFGAAQHGVVV 145
D A++ D D+ S S G + + ++ G +
Sbjct: 137 I-TTEDEAASLIYG-LDVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAI 194
Query: 146 SCSAGNSGPGPFTATNI-----APWILTVGASTIDREFP 179
A +G N + + +T+GA P
Sbjct: 195 YVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHKDLHP 233
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 604 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.85 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.84 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 98.95 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 98.77 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 97.17 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 96.38 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 96.19 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 95.78 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 95.73 | |
| 3qbt_B | 140 | Inositol polyphosphate 5-phosphatase OCRL-1; prote | 89.82 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 85.01 | |
| 2e6j_A | 112 | Hydin protein; PAPD, structural genomics, NPPSFA, | 83.97 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-117 Score=998.93 Aligned_cols=572 Identities=40% Similarity=0.646 Sum_probs=518.3
Q ss_pred CCCCCCCCCCCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCe
Q 045236 2 SKDFPASACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKAR 81 (604)
Q Consensus 2 ~~~f~~~~cn~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~ 81 (604)
|++|+.+.||+||||+|+|.+++.... ++...++.+|+|.+||||||||||||+.+.+.+++|++.|+++||||+|+
T Consensus 61 g~~f~~~~cN~kiig~~~f~~~~~~~~---~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~ 137 (649)
T 3i6s_A 61 GTQFNASMCNRKLIGANYFNKGILAND---PTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRAR 137 (649)
T ss_dssp BTTBCTTSCCSSEEEEEECCHHHHHHC---TTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCE
T ss_pred CccccccccccceeeeEeccCcccccc---cccccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCE
Confidence 578999999999999999998764332 24456678899999999999999999999989999999999999999999
Q ss_pred EEEEEeecCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCccc
Q 045236 82 IAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATN 161 (604)
Q Consensus 82 l~~~kv~~~~g~~~~dil~aid~A~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~ 161 (604)
|++||+|+..++..+++++||++|+++|+||||||||.. ..++..+++.+++++|+++||+||+||||+|+...+.++
T Consensus 138 l~~~kv~~~~g~~~~~i~~Ai~~A~~~gvdVIn~SlG~~--~~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~ 215 (649)
T 3i6s_A 138 LAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGYR--FIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNN 215 (649)
T ss_dssp EEEEECEETTEECHHHHHHHHHHHHHTTCSEEEECCCCC--SCCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSC
T ss_pred EEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCccC--CcccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCC
Confidence 999999998889999999999999999999999999988 577888999999999999999999999999999999999
Q ss_pred CCCceEeeccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCc--cccEEEEecC
Q 045236 162 IAPWILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKV--QGKIVVCDRG 239 (604)
Q Consensus 162 ~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~--~gkIvl~~~g 239 (604)
.+||+|+|||++.||.|...+.+++++.+.|.++++.... ...+||+|.. ....|.+..++..++ +||||+|+|+
T Consensus 216 ~ap~vitVgAst~dr~f~~~~~lgng~~~~g~sl~~~~~~-~~~~plv~~~--~~~~C~~~~l~~~~vdl~GkIvlc~~g 292 (649)
T 3i6s_A 216 GSPWILCVASGHTDRTFAGTLTLGNGLKIRGWSLFPARAF-VRDSPVIYNK--TLSDCSSEELLSQVENPENTIVICDDN 292 (649)
T ss_dssp CCTTSEEEEEEECSCEEEEEEEETTSCEEEEECCCSSCBC-EEEEEEECCT--TTTTCCCHHHHTTSSSGGGCEEEECCC
T ss_pred CCCceEEEeeeecccceeeEEEeCCCcEEeeeecccCccc-CcceeeEecc--cccccccccccccccccCCcEEEEeCC
Confidence 9999999999999999999999999999999999987653 6789999977 346799888888888 9999999999
Q ss_pred CchhhhHHHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCc
Q 045236 240 GNARVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPK 319 (604)
Q Consensus 240 ~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 319 (604)
.+.+.+|..+++++|+.|+|++|+. .....+.+.+|.++|+..++..|++|++++.+++++|.+..+..+..+ .+.
T Consensus 293 ~~~~~~k~~~~~~~Ga~g~i~~n~~---~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~~~-~~~ 368 (649)
T 3i6s_A 293 GDFSDQMRIITRARLKAAIFISEDP---GVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKP-APV 368 (649)
T ss_dssp SCHHHHHHHHHHHTCSEEEEECCCG---GGGGCCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEECCCSS-CCE
T ss_pred CccHHHHHHHHHhcCceEEEEecCc---cccccccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEeecceeeccCC-CCc
Confidence 9999999999999999999999986 344567789999999999999999999999999999999999998888 999
Q ss_pred cccccCCCCCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCC-CCccceEecCcccchhHHHHHHHHHHHhCCCCCH
Q 045236 320 VAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDP-RRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSP 398 (604)
Q Consensus 320 ~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~-~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp 398 (604)
++.||||||+...+++|||||+|||++|+++|+....+.....+. +...|..+||||||||||||++|||||+||+|+|
T Consensus 369 va~FSSrGP~~~~~~ilKPDI~APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~P~~Sp 448 (649)
T 3i6s_A 369 VAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSP 448 (649)
T ss_dssp ECTTSCCSSCTTCTTSCSCCEEEECSSEEEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHSTTCCH
T ss_pred ccccCCCCCCCCCCCccCCeEEeCCCCeEeecCCCCCccccccccccccceecccccccccHHHHHHHHHHHHhCCCCCH
Confidence 999999999998889999999999999999999865544333332 3468999999999999999999999999999999
Q ss_pred HHHHHHHHhccccCCCCCCccccCCCCCCCCCCCCCCcccCccccCCCCceeccCchhhhhccccCCCCccceeeeccCC
Q 045236 399 AAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDVKRISVFVREP 478 (604)
Q Consensus 399 ~~Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A~~~glv~d~~~~d~~~~~c~~~~~~~~~~~~~~~~ 478 (604)
++||++||+||+++++.++++.+...+.++++++||+|+||+.+|++||||||++++||++|||++||+.++|+.|++++
T Consensus 449 a~IksaLmtTA~~~~~~g~~i~~~~~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~~~ 528 (649)
T 3i6s_A 449 SAIRSAMMTTADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSS 528 (649)
T ss_dssp HHHHHHHHHTCBCBCTTSSBCEETTTSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHTTT
T ss_pred HHHHHHHhcccccccCCCCcccccccCCcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeecCC
Confidence 99999999999999999999988766788999999999999999999999999999999999999999999999999876
Q ss_pred ccccc--ccccCCCCCCCCCCceeeec-cCCCce-----EEEEEEEeccCCCCceEEEEEEECCCCcEEEEEcceEEEcc
Q 045236 479 VSSDI--CTRALATPGNLNYPSFSVVF-NSNNDV-----VKYKRVVKNVGSSVDAVYEVKVNAPPNVAVNVWPSKLAFSA 550 (604)
Q Consensus 479 ~~~~~--~~~~~~~~~~ln~ps~~~~~-~~~~~~-----~t~~rtv~n~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~ 550 (604)
. . |+. .+.+||||||++.+ +. .+ ++|+|||||||+. .+||++.++.|.|++|+|+|.+|+|.+
T Consensus 529 ~---~~~C~~---~~~~lNyPs~~~~~~~~--~~~~~~~~~~~Rtvtnvg~~-~~~y~~~v~~p~g~~v~v~P~~l~f~~ 599 (649)
T 3i6s_A 529 A---SHNCSN---PSADLNYPSFIALYSIE--GNFTLLEQKFKRTVTNVGKG-AATYKAKLKAPKNSTISVSPQILVFKN 599 (649)
T ss_dssp S---CC-CCC---CCCCCCCSSEEEEECCS--SCCCCEEEEEEEEEEECC---CEEEEEEEECCTTEEEEEESSEEEECC
T ss_pred C---cCCCCC---chhhcCCCcEEeecccC--CCCccceEEEEEEEEEeCCC-CcEEEEEEecCCCCEEEEECCEEEEec
Confidence 6 6 974 67799999999986 42 33 8999999999998 899999999999999999999999988
Q ss_pred cceeEEEEEEEEeeccCCCCCCCceEEEEEEEc--CCeEEEEEEEEEec
Q 045236 551 EKKALAYEITFSSVGLDGLGVSPQQSGSIEWSD--GVHLVRSPIAVRWI 597 (604)
Q Consensus 551 ~~~~~~~~v~~~~~~~~~~~~~~~~~G~l~~~~--~~~~v~~P~~~~~~ 597 (604)
.+|+++|+|+|+..... ...|.||+|+|+| ++|.||+||+|+..
T Consensus 600 ~~~~~~f~v~~~~~~~~---~~~~~fg~l~w~~~~~~h~vrsPi~v~~~ 645 (649)
T 3i6s_A 600 KNEKQSYTLTIRYIGDE---GQSRNVGSITWVEQNGNHSVRSPIVTSPI 645 (649)
T ss_dssp -CCEEEEEEEEEECCC------CCCEEEEEEEETTSCCEEEEEEEEEEC
T ss_pred CCCEEEEEEEEEecccC---CCceEEEEEEEEcCCCCeEEEEeEEEEEc
Confidence 99999999999987543 4678999999998 99999999999875
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-105 Score=902.85 Aligned_cols=547 Identities=42% Similarity=0.703 Sum_probs=458.0
Q ss_pred CCCCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEee
Q 045236 9 ACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKIC 88 (604)
Q Consensus 9 ~cn~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~ 88 (604)
.||+||||+|+|..+.. ....+..+|+|.+||||||||||||+.+.+.+++|++.+.++||||+|+|++||+|
T Consensus 63 ~~n~k~ig~~~~~~~~~-------~~~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~ 135 (621)
T 3vta_A 63 RCNRKIIGARSYHIGRP-------ISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVC 135 (621)
T ss_dssp CCCSSEEEEEECCCSSS-------CCTTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECE
T ss_pred ccCcceeeeeecccCCc-------cCCCCCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEee
Confidence 59999999999998753 23456778999999999999999999988888888888899999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCcccCCCceEe
Q 045236 89 WSPGCFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILT 168 (604)
Q Consensus 89 ~~~g~~~~dil~aid~A~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vit 168 (604)
++.+|..+++++||++|+++|+||||||||+.. ...+..+++++++++|+++||+||+||||+|+...+.++.+||+++
T Consensus 136 ~~~g~~~~di~~a~~~a~~~g~dVin~SlG~~~-~~~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~ 214 (621)
T 3vta_A 136 WNDGCSDTDILAAYDDAIADGVDIISLSVGGAN-PRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLS 214 (621)
T ss_dssp ETTEECHHHHHHHHHHHHHHTCSEEEECCCCCC-GGGGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEE
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCEEEecCCCCC-CCCcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCcee
Confidence 999999999999999999999999999999874 4556788999999999999999999999999999999999999999
Q ss_pred eccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCC--------CcccCCCCCCCCccccEEEEecCC
Q 045236 169 VGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGD--------RFCYMGRLEPSKVQGKIVVCDRGG 240 (604)
Q Consensus 169 VgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~--------~~C~~~~~~~~~~~gkIvl~~~g~ 240 (604)
|++++.+|.+...+.++++..+.+.+++... ...+++++...... ..|.+..+++.+++|||++|+++.
T Consensus 215 v~ast~d~~~~~~~~~~~~~~~~~~s~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gkivl~~~~~ 291 (621)
T 3vta_A 215 VAASTMDRKFVTQVQIGNGQSFQGVSINTFD---NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASF 291 (621)
T ss_dssp EEEECCSEEEEEEEEETTSCEEEEBCCCCSC---CEEECEEETTTSCCTTCCHHHHTTTCTTCSCGGGTTTSEEECSSCC
T ss_pred EEEeeccccceeeEEeccCceeeeeecccCC---CcccccccccccccccccccccccccccccccccccceEEEEecCC
Confidence 9999999999999999999999998876543 45677777654332 678888999999999999998764
Q ss_pred chhhhHHHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCcc
Q 045236 241 NARVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKV 320 (604)
Q Consensus 241 ~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 320 (604)
. .+......+|+.+++++++... ..+.+.+|...++..++..++.|+.....+.+.+....+.. ... .+.+
T Consensus 292 ~---~~~~~~~~~Ga~gvi~~~~~~~----~~~~~~lP~~~v~~~~g~~i~~~~~~~~~~~a~~~~~~~~~-~~~-~~~v 362 (621)
T 3vta_A 292 G---PHEFFKSLDGAAGVLMTSNTRD----YADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTIL-NAS-APVV 362 (621)
T ss_dssp C---HHHHHHHHTTCSEEEEECSCCS----SCCCCSSSEEEECHHHHHHHHHHHHHHSSCCEEECCCEEEE-CTT-CCCB
T ss_pred C---hhHHhhhhcceeEEEEEecCCC----cccccccceEEECHHHHHHHHHHHhccCCcceEEecceEec-cCC-CCce
Confidence 3 4566778899999999987543 23567899999999999999999999999888875554443 345 8899
Q ss_pred ccccCCCCCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHH
Q 045236 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAA 400 (604)
Q Consensus 321 a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~ 400 (604)
+.||||||+...+++|||||+|||++|+|+|+....... ......|..|||||||||||||++|||||+||+|+|++
T Consensus 363 a~FSSrGP~~~~~~ilKPDI~APG~~Ilsa~~~~~~~~~---~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~ 439 (621)
T 3vta_A 363 VSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGG---IRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAA 439 (621)
T ss_dssp CTTSCCCSCTTCTTSCSCCEEEECSSEEEECCSSSCBTT---BCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHH
T ss_pred eeecCCCCCCCCCCeeccccccCCcceEeecCccccccC---cCCCCcceEecCccccchhhhhHHHHHHHHCCCCCHHH
Confidence 999999999888899999999999999999987543222 23347899999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCCCCccccCCCCCCCCCCCCCCcccCccccCCCCceeccCchhhhhccccCCCCccceeeeccCCcc
Q 045236 401 IKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDVKRISVFVREPVS 480 (604)
Q Consensus 401 Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A~~~glv~d~~~~d~~~~~c~~~~~~~~~~~~~~~~~~ 480 (604)
||++||+||++++.. ..+..+++||+|+|||.+|++||||||++.+||+.|||+++|+.++++.++++..
T Consensus 440 IksaLmtTA~~~~~~---------~~~~~~~~~GaG~v~~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~~~~- 509 (621)
T 3vta_A 440 IKSALMTTASPMNAR---------FNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYS- 509 (621)
T ss_dssp HHHHHHHTCBCCCTT---------TCTTTHHHHTTCBCCHHHHSCCSEECCCCGGGCC----------------------
T ss_pred HHHHHHhcCCccccc---------CCCCCchhcCCCccCHHHhcCCCeEeecccchhhhhhcccCCCchhheeeecccc-
Confidence 999999999988755 3456779999999999999999999999999999999999999999999998776
Q ss_pred ccccccc-CCCCCCCCCCceeeeccC-CCceEEEEEEEeccCCCCceEEEEEEECCCCcEEEEEcceEEEcccceeEEEE
Q 045236 481 SDICTRA-LATPGNLNYPSFSVVFNS-NNDVVKYKRVVKNVGSSVDAVYEVKVNAPPNVAVNVWPSKLAFSAEKKALAYE 558 (604)
Q Consensus 481 ~~~~~~~-~~~~~~ln~ps~~~~~~~-~~~~~t~~rtv~n~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~ 558 (604)
.|... .....+||||||++.+.. ...+++++|||||||.. ..||+++++.|+|++|+|+|++|+|.+.+|+++|+
T Consensus 510 --~~~~~~~~~~~~lN~pS~~v~~~~~~~~~~t~~rtvtnvg~~-~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~ 586 (621)
T 3vta_A 510 --ACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQ-ASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFT 586 (621)
T ss_dssp ----------CGGGSCCSSEEEECCSSCCEEEEEEEEEEECSSS-CEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEE
T ss_pred --ccCCCCcCcccccccccEEEEccCCCceEEEEEEEEEccCCC-CeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEE
Confidence 77654 556779999999986542 34688999999999998 99999999999999999999999998889999999
Q ss_pred EEEEeeccCCCCCCCceEEEEEEEcCCeEEEEEEEEEe
Q 045236 559 ITFSSVGLDGLGVSPQQSGSIEWSDGVHLVRSPIAVRW 596 (604)
Q Consensus 559 v~~~~~~~~~~~~~~~~~G~l~~~~~~~~v~~P~~~~~ 596 (604)
|+|+... .+.++||+|+|+|++|.||+||+|+.
T Consensus 587 vt~~~~~-----~~~~~~g~l~w~d~~h~Vr~Pi~v~~ 619 (621)
T 3vta_A 587 LTVRGSI-----KGFVVSASLVWSDGVHYVRSPITITS 619 (621)
T ss_dssp EEEEECC-----CSSEEEEEEEEECSSCCCEEEEEEEC
T ss_pred EEEEecC-----CCceEEEEEEEEcCCEEEEeCEEEEE
Confidence 9998653 47899999999999999999999985
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-78 Score=704.04 Aligned_cols=495 Identities=22% Similarity=0.287 Sum_probs=391.2
Q ss_pred CCCCCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEe
Q 045236 8 SACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKI 87 (604)
Q Consensus 8 ~~cn~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv 87 (604)
.+||+|||++|+|.++. .+| |..||||||||||||+.+.+.+. .+.+.||||+|+|++||+
T Consensus 64 ~~~n~Kii~~~~~~~~~--------------~~~-D~~gHGThVAgiiAg~~~~~~~~----~~~~~GvAP~A~l~~~kv 124 (926)
T 1xf1_A 64 EWVNDKVAYYHDYSKDG--------------KTA-VDQEHGTHVSGILSGNAPSETKE----PYRLEGAMPEAQLLLMRV 124 (926)
T ss_dssp BCCSSSCCEEEESCCCS--------------CCC-CSSTTTTHHHHSSCCCCCCCCSC----SCCTTTTCTTSEEEEEEC
T ss_pred cccCcccceeeccccCC--------------CCC-CCCCcHHHHHHHHhCCCccCccc----CCceEEECCCCEEEEEEe
Confidence 47999999999997642 123 89999999999999998654432 245699999999999999
Q ss_pred ecCCC--CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCC---------
Q 045236 88 CWSPG--CFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGP--------- 156 (604)
Q Consensus 88 ~~~~g--~~~~dil~aid~A~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~--------- 156 (604)
|++.+ +..+++++||++|+++|+||||||||..........+.+..++++|+++||+||+||||+|+..
T Consensus 125 ~~~~g~~~~~~~i~~Ai~~Ai~~gvdVIn~SlG~~~~~~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~ 204 (926)
T 1xf1_A 125 EIVNGLADYARNYAQAIRDAINLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLAD 204 (926)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHTTCEEEEECCSSCCCTTCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTT
T ss_pred ecCCCCCCcHHHHHHHHHHHHHhCCcEEEECCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCcccccccc
Confidence 98876 4567899999999999999999999987311334567888999999999999999999999632
Q ss_pred ----CCc--ccCCCceEeeccCCCCCccceEEEc-CCCcEEEeeeeccCCCC-CCceeeEEEcCCCCCCcccCCCCCCCC
Q 045236 157 ----FTA--TNIAPWILTVGASTIDREFPADAIL-GDGRIFGGVSLYAGESL-PDFKLHLVYGGDCGDRFCYMGRLEPSK 228 (604)
Q Consensus 157 ----~~~--~~~ap~vitVgAst~d~~~~~~~~~-~~~~~~~g~~~~~~~~~-~~~~~~lv~~~~~~~~~C~~~~~~~~~ 228 (604)
.+. +..+||+|+|||++.++.+...+.+ +++....+.+++...++ ....+++++... .|.+..+ .+
T Consensus 205 ~p~~~tv~~PA~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~----g~~~~~~--~~ 278 (926)
T 1xf1_A 205 HPDYGVVGTPAAADSTLTVASYSPDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR----GTKEDDF--KD 278 (926)
T ss_dssp CCCCBCCCSCTTTCCSEEEEEEBCSEEEEEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT----SCSTTTT--TT
T ss_pred CCCcceecCcccCCceEEEeccccccccccceEEEcCCCcceeeEEEecCCCCCCceEEEEECCC----CCCccch--hh
Confidence 222 3358999999999999999888887 56655555555443333 356799999764 3876666 68
Q ss_pred ccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcc-ccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEee
Q 045236 229 VQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEE-LIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFR 307 (604)
Q Consensus 229 ~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~-~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~ 307 (604)
++||||+|+|+.|.+.+|..+++++|+.|+|++++...... .......+|..+++..++..|++ .+..+|.+.
T Consensus 279 v~Gkivl~~rg~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~------~~~~ti~~~ 352 (926)
T 1xf1_A 279 VKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD------NPQKTITFN 352 (926)
T ss_dssp CTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH------CSSCEEEEC
T ss_pred cCCeEEEEECCCCCHHHHHHHHHhCCCcEEEEEecCCCCcccccCccccccEEEEeHHHHHHHHh------CCceEEEec
Confidence 99999999999999999999999999999999998654332 23346789999999999998874 345566665
Q ss_pred eee--cCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHH
Q 045236 308 GTV--ISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGL 385 (604)
Q Consensus 308 ~~~--~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~ 385 (604)
.+. +.... .+.++.||||||+. +++|||||+|||++|+++++. +.|..+||||||||||||+
T Consensus 353 ~~~~~~~~~~-~~~~a~FSSrGp~~--~~~lKPDI~APG~~I~sa~~~-------------~~y~~~SGTSMAaPhVAG~ 416 (926)
T 1xf1_A 353 ATPKVLPTAS-GTKLSRFSSWGLTA--DGNIKPDIAAPGQDILSSVAN-------------NKYAKLSGTSMSAPLVAGI 416 (926)
T ss_dssp SSCEEEECSS-CSBCCTTSCCCBCT--TSCBSCCEEEECCCEEESSSC-------------SSSCEEESCTTHHHHHHHH
T ss_pred ccceecccCC-cceeccccCCCCCC--CCccCceEECCCCCEEeeccC-------------CcceecCccchhHHHHHHH
Confidence 543 44445 78999999999996 799999999999999999986 5899999999999999999
Q ss_pred HHHHH----HhCCCCCHHH----HHHHHHhccccCCCCCCccccCCCCCCCCCCCCCCcccCccccCCCCceeccCchhh
Q 045236 386 AALLR----KAYPDWSPAA----IKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALNPGLVYDIDVSEY 457 (604)
Q Consensus 386 aALl~----q~~P~~sp~~----Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A~~~glv~d~~~~d~ 457 (604)
+|||+ +.||+|+|+| ||++||+||+++...+. ...+++++||+|+||+.+|+++.+
T Consensus 417 aALl~q~~k~~~P~~sp~~~~~~Iks~L~~TA~~~~~~~~-------~~~~~~~~~G~G~vn~~~A~~~~~--------- 480 (926)
T 1xf1_A 417 MGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDE-------KAYFSPRQQGAGAVDAKKASAATM--------- 480 (926)
T ss_dssp HHHHHHHHHHSSSSSHHHHHHHHHHHHHHHHSBCCEEGGG-------TEECCHHHHTTCBCCHHHHHHCSE---------
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHhcCCCcccCCC-------CccCChhccCCCccCHHHhcCCCe---------
Confidence 99995 5699999997 99999999998754321 235678999999999999999853
Q ss_pred hhccccCCCCccceeeeccCCcccccccccCCCCCCCCCCceeeeccCCCceEEEEEEEeccCCCC-ceEEEEEEEC--C
Q 045236 458 VAFLCSIGYDVKRISVFVREPVSSDICTRALATPGNLNYPSFSVVFNSNNDVVKYKRVVKNVGSSV-DAVYEVKVNA--P 534 (604)
Q Consensus 458 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~ps~~~~~~~~~~~~t~~rtv~n~~~~~-~~ty~~~~~~--~ 534 (604)
|||..+++..+ +.+... ..+.+++|||+|+|+.. ..+|++.+.. |
T Consensus 481 --~l~~~~~~~~~----------------------------i~l~~~--~~~~~~~~tv~N~g~~~~~~~y~~~v~~~~~ 528 (926)
T 1xf1_A 481 --YVTDKDNTSSK----------------------------VHLNNV--SDKFEVTVNVHNKSDKPQELYYQATVQTDKV 528 (926)
T ss_dssp --EEEESSSSCSC----------------------------EEEEEE--CSEEEEEEEEEECSSSCEEEEEEEEEEEEEE
T ss_pred --EEEcCCCCcce----------------------------eecccc--CccEEEEEEEEEeCCCceeEEEEEEEEeccC
Confidence 67876554321 122211 23678999999999841 4578887765 6
Q ss_pred CCcEEEEEcceEEEccc-------ceeEEEEEEEEeeccC-----CCCCCCceEEEEEEE--cCCeE-EEEEEEEEec
Q 045236 535 PNVAVNVWPSKLAFSAE-------KKALAYEITFSSVGLD-----GLGVSPQQSGSIEWS--DGVHL-VRSPIAVRWI 597 (604)
Q Consensus 535 ~g~~v~v~p~~~~~~~~-------~~~~~~~v~~~~~~~~-----~~~~~~~~~G~l~~~--~~~~~-v~~P~~~~~~ 597 (604)
.+..++|.|..|.|..+ ||+++|+|+|+..... ......++||+|+|+ ++.|. ||+||+++..
T Consensus 529 ~~~~~~v~p~~l~~~~~~~vtv~ag~~~~~~vt~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~v~~P~~~~~g 606 (926)
T 1xf1_A 529 DGKHFALAPKVLYETSWQKITIPANSSKQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIGFRG 606 (926)
T ss_dssp ETTEEEEEEEEEEECCCEEEEECTTEEEEEEEEEECHHHHHHHHHHSTTCEEEEEEEEEESSTTSCCCEEEEEEEEES
T ss_pred CCceEEeccceeEeccCCeEEECCCCEEEEEEEEEcCccchhhcccccCCcEEEEEEEEEeCCCCCCEEEeeeEEEec
Confidence 78999998887766544 9999999999986210 001346899999999 56664 9999999876
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-50 Score=435.36 Aligned_cols=332 Identities=24% Similarity=0.361 Sum_probs=247.3
Q ss_pred CCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCC--eEEEEEeecCCC-CCHHHHHHHHHHHHHC-CCcEE
Q 045236 38 SKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKA--RIAVYKICWSPG-CFDSDILAAMDQAIAD-GVDVI 113 (604)
Q Consensus 38 ~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A--~l~~~kv~~~~g-~~~~dil~aid~A~~~-gvdVI 113 (604)
+.+|.|.+||||||||||+|.... .| +.||||+| +|+.+|+++..+ +..+++++||+||+++ |+|||
T Consensus 56 ~~~~~d~~gHGT~vAgiia~~~~~----~g-----~~GvAP~a~~~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~g~~Vi 126 (441)
T 1y9z_A 56 WYQPGNNNAHGTHVAGTIAAIANN----EG-----VVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVV 126 (441)
T ss_dssp TTCCCSSCCHHHHHHHHHHCCCSS----SB-----CCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEE
T ss_pred CCCCCCCCCcHHHHHHHHhcccCC----CC-----ceEecCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHhcCCcEE
Confidence 446789999999999999998521 12 48999995 999999998876 7788999999999999 99999
Q ss_pred EEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCcccCCCceEeeccCCCCCccceEEEcC--------
Q 045236 114 SLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPADAILG-------- 185 (604)
Q Consensus 114 n~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~d~~~~~~~~~~-------- 185 (604)
|||||... ....+..++.++.++|++||+||||+|.....++...+++|+|||++.+.........+
T Consensus 127 n~S~G~~~-----~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~g~~vdv~Ap 201 (441)
T 1y9z_A 127 TMSLGGSG-----STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGP 201 (441)
T ss_dssp EECCCBSC-----CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCTTEEEEEE
T ss_pred EeCCCCCC-----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccccCCCceEEEec
Confidence 99999872 23456778888899999999999999988777888899999999988765432221111
Q ss_pred -----------CCc----EEEeeeeccCCCCCCc-eee--EEEcCCC-------CCCcccCC--CCCCCCccccEEEEec
Q 045236 186 -----------DGR----IFGGVSLYAGESLPDF-KLH--LVYGGDC-------GDRFCYMG--RLEPSKVQGKIVVCDR 238 (604)
Q Consensus 186 -----------~~~----~~~g~~~~~~~~~~~~-~~~--lv~~~~~-------~~~~C~~~--~~~~~~~~gkIvl~~~ 238 (604)
++. .+.|.+++....++.. .++ +.|.... ....|... .++..+++|||++|+|
T Consensus 202 G~~i~s~~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~C~~~~~~~~~~~~~gkivl~~r 281 (441)
T 1y9z_A 202 GEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVER 281 (441)
T ss_dssp CSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEEC
T ss_pred cCCeeccccCCCcccceeecccccccccccCcccccccCCccccccccccccccchhccccccccccCCCccccEEEEec
Confidence 111 1223332221110000 000 0111000 01457543 5678899999999999
Q ss_pred CCc-----hhhhHHHHHHhcCceEEEEEcCCCCCcc------ccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEee
Q 045236 239 GGN-----ARVEKGAAVKLAGGLGMILANTDESGEE------LIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFR 307 (604)
Q Consensus 239 g~~-----~~~~~~~~~~~aGa~g~i~~~~~~~~~~------~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~ 307 (604)
+.+ .+.+|..+++++|+.|+|++++...... .....+.+|.+.++..++..|++|+.+. +++
T Consensus 282 g~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~----~t~--- 354 (441)
T 1y9z_A 282 VGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQS----TTV--- 354 (441)
T ss_dssp CSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTTSE----EEE---
T ss_pred cccCcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhcCC----ccc---
Confidence 876 7888999999999999999987543111 1223567999999999999999875321 110
Q ss_pred eeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHH
Q 045236 308 GTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAA 387 (604)
Q Consensus 308 ~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aA 387 (604)
++... ..|..+||||||||||||++|
T Consensus 355 -----------------------------------------~~~~~-------------~~y~~~sGTSmAaP~VAG~aA 380 (441)
T 1y9z_A 355 -----------------------------------------SNQGN-------------QDYEYYNGTSMATPHVSGVAT 380 (441)
T ss_dssp -----------------------------------------EEEEE-------------ESEEEECSHHHHHHHHHHHHH
T ss_pred -----------------------------------------ccccC-------------CCceeecccccCCcccchHHH
Confidence 01111 589999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCCCCcccCccccCCCCceeccCchhhhhccccCCCC
Q 045236 388 LLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYD 467 (604)
Q Consensus 388 Ll~q~~P~~sp~~Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A~~~glv~d~~~~d~~~~~c~~~~~ 467 (604)
||||+||+|+|++||++||+||++++..+ .+.+||+|+||+.+|+ ||+.|||+++++
T Consensus 381 Ll~~~~p~~sp~~ik~~L~~TA~~~~~~g------------~~~~~G~G~vn~~~A~-----------~~~~~lc~~~~~ 437 (441)
T 1y9z_A 381 LVWSYHPECSASQVRAALNATADDLSVAG------------RDNQTGYGMINAVAAK-----------AYLDESCTGPTD 437 (441)
T ss_dssp HHHHHCTTSCHHHHHHHHHHHSBCCSSSS------------CBTTTBTCBCCHHHHH-----------HHHHHCTTCC--
T ss_pred HHHHHCCCCCHHHHHHHHHhhchhhccCC------------CcccccccccCHHHHH-----------HHHHhhhcCCCC
Confidence 99999999999999999999999886432 2467999999999995 699999998764
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-48 Score=425.55 Aligned_cols=255 Identities=38% Similarity=0.557 Sum_probs=210.8
Q ss_pred CCCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeec
Q 045236 10 CNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICW 89 (604)
Q Consensus 10 cn~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~ 89 (604)
-++|+++.++|..+. .+|.|.+||||||||||||+... ..|.+.||||+|+|+.||+++
T Consensus 157 l~~~i~~~~d~~~~~--------------~~~~D~~gHGThVAgiiag~~~~-------~~g~~~GvAp~A~l~~~kv~~ 215 (539)
T 3afg_A 157 LQGKVIGWVDFVNGK--------------TTPYDDNGHGTHVASIAAGTGAA-------SNGKYKGMAPGAKLVGIKVLN 215 (539)
T ss_dssp GTTTEEEEEETTTCC--------------SSCCBSSSHHHHHHHHHHCCCGG-------GTTTTCCSCTTCEEEEEECSC
T ss_pred HhCCEeeeEECCCCC--------------CCCCCCCCCHHHHHHHHhCcCcc-------CCCCEEEECCCCEEEEEEeec
Confidence 468899999987642 34789999999999999998532 123468999999999999998
Q ss_pred CCC-CCHHHHHHHHHHHHHC----CCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCC--CcccC
Q 045236 90 SPG-CFDSDILAAMDQAIAD----GVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPF--TATNI 162 (604)
Q Consensus 90 ~~g-~~~~dil~aid~A~~~----gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~--~~~~~ 162 (604)
+.+ +..+++++||+||+++ |++|||||||.. ......+.+..++.++.++|++||+||||+|+... ..+..
T Consensus 216 ~~g~~~~~~i~~ai~~a~~~~~~~g~~Vin~SlG~~--~~~~~~~~l~~ai~~a~~~GvlvV~AAGN~g~~~~~~~~Pa~ 293 (539)
T 3afg_A 216 GQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSS--QSSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAA 293 (539)
T ss_dssp TTSEEEHHHHHHHHHHHHHTHHHHTEEEEEECCCCC--SCCCSCSHHHHHHHHHHHTTCEEEEECCSCCSSSSCCCTTTT
T ss_pred CCCCcCHHHHHHHHHHHHhhhhhcCCcEEEeCCCCC--CCCccchHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCcc
Confidence 876 6788999999999975 999999999988 34445688999999999999999999999997543 34567
Q ss_pred CCceEeeccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCch
Q 045236 163 APWILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNA 242 (604)
Q Consensus 163 ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~ 242 (604)
.+++|+|||++.
T Consensus 294 ~~~vitVgA~~~-------------------------------------------------------------------- 305 (539)
T 3afg_A 294 ASKVITVGAVDK-------------------------------------------------------------------- 305 (539)
T ss_dssp CSSSEEEEEECT--------------------------------------------------------------------
T ss_pred CCceEEEeeecC--------------------------------------------------------------------
Confidence 889999997321
Q ss_pred hhhHHHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCcccc
Q 045236 243 RVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAA 322 (604)
Q Consensus 243 ~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~ 322 (604)
.+.++.
T Consensus 306 --------------------------------------------------------------------------~~~~a~ 311 (539)
T 3afg_A 306 --------------------------------------------------------------------------YDVITD 311 (539)
T ss_dssp --------------------------------------------------------------------------TSCBCS
T ss_pred --------------------------------------------------------------------------Cccccc
Confidence 345689
Q ss_pred ccCCCCCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHH
Q 045236 323 FSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIK 402 (604)
Q Consensus 323 fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik 402 (604)
||||||+. ++++||||+|||++|+++++...... ......|..++|||||||||||++|||+|+||+|+|++||
T Consensus 312 fSs~Gp~~--~~~~kpdi~APG~~I~s~~~~~~~~~----~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~vk 385 (539)
T 3afg_A 312 FSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSMG----QPINDYYTAAPGTAMATPHVAGIAALLLQAHPSWTPDKVK 385 (539)
T ss_dssp SSCCCCCT--TCBCCCSEEEECSSEEEECCTTCCCS----EECSSSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHH
T ss_pred ccCCCCCC--CCCCcccEecCcCCEEeeccCCCCCC----CCCcccccccCchHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 99999998 78999999999999999997532110 1111369999999999999999999999999999999999
Q ss_pred HHHHhccccCCCCCCccccCCCCCCCCCCCCCCcccCccccCCC
Q 045236 403 SALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALNP 446 (604)
Q Consensus 403 s~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A~~~ 446 (604)
++|++||+++...+ .+++.||+|+||+.+|++.
T Consensus 386 ~~L~~tA~~~~~~~-----------~~~~~~G~G~vn~~~Al~~ 418 (539)
T 3afg_A 386 TALIETADIVKPDE-----------IADIAYGAGRVNAYKAAYY 418 (539)
T ss_dssp HHHHHHSBCSSGGG-----------CSBTTTBTCBCCHHHHHTG
T ss_pred HHHHhhCccCCCCC-----------CCccCccCCccCHHHHhhh
Confidence 99999999775221 2457899999999999985
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-46 Score=437.49 Aligned_cols=358 Identities=25% Similarity=0.273 Sum_probs=248.3
Q ss_pred CCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC---CCHHHHHHHHHHHHH-----CCCcEE
Q 045236 42 RDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG---CFDSDILAAMDQAIA-----DGVDVI 113 (604)
Q Consensus 42 ~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~dil~aid~A~~-----~gvdVI 113 (604)
.|++||||||||||||.. ++ ..+.||||+|+|+.+|+++..+ ....+++.+|.+|++ .|++||
T Consensus 267 ~D~~GHGThVAGIIAa~~-N~--------~g~~GVAP~AkI~~vKVld~~~g~~~t~s~l~~AI~~Aid~a~~~~gadVI 337 (1354)
T 3lxu_X 267 GMSSPHGTHVSSIASGNH-SS--------RDVDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVI 337 (1354)
T ss_dssp ECCCHHHHHHHHHHCCCC-SS--------SSSCCSCTTCEEEEEECBCTTTSSCBCHHHHHHHHHHHHHHHHTTCCCCEE
T ss_pred CCCCCcHHHHHHHHhcCC-CC--------CCceeecCCCEEEEEEeccCCCCcccChHHHHHHHHHHHHHHhhcCCceEE
Confidence 478999999999999986 21 2248999999999999997643 255778888888887 799999
Q ss_pred EEcccCCCCCCCCcccHHHHHHHhhh-cCCcEEEEcCCCCCCCCCC--ccc--CCCceEeeccCCCCCccceEEEcCCCc
Q 045236 114 SLSVGASGYAPQYDQDSIAIGSFGAA-QHGVVVSCSAGNSGPGPFT--ATN--IAPWILTVGASTIDREFPADAILGDGR 188 (604)
Q Consensus 114 n~SlG~~~~~~~~~~~~~~~a~~~a~-~~Gi~vV~AAGN~G~~~~~--~~~--~ap~vitVgAst~d~~~~~~~~~~~~~ 188 (604)
|||||.. ......+.+..++.++. ++|++||+||||+|+...+ .+. .++++|+|||++.+.........
T Consensus 338 NmS~G~~--~~~~~~~~l~~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~ys~---- 411 (1354)
T 3lxu_X 338 NMSYGEH--ANWSNSGRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAM---- 411 (1354)
T ss_dssp EECCCCC--CSCSSCCHHHHHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC--------
T ss_pred EcCCccC--CCCCccHHHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCccccccc----
Confidence 9999998 33233567777787876 8999999999999976443 344 37999999996543211000000
Q ss_pred EEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCc
Q 045236 189 IFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGE 268 (604)
Q Consensus 189 ~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~ 268 (604)
T Consensus 412 -------------------------------------------------------------------------------- 411 (1354)
T 3lxu_X 412 -------------------------------------------------------------------------------- 411 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEE
Q 045236 269 ELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNIL 348 (604)
Q Consensus 269 ~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~ 348 (604)
.... .+.++.||||||+. ++.+||||+|||++|+
T Consensus 412 -------------------------------------------~~~~-~g~~asFSS~GPt~--dg~~KpDIaAPG~~I~ 445 (1354)
T 3lxu_X 412 -------------------------------------------REKL-PGNVYTWTSRDPCI--DGGQGVTVCAPGGAIA 445 (1354)
T ss_dssp --------------------------------------------------CCCCCCCCSCCS--SSSCCEEEEEEC----
T ss_pred -------------------------------------------ccCC-CCccccccCCCCCc--cCCCcceEEecCceEE
Confidence 0001 46778999999998 7899999999999999
Q ss_pred ecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHH----hCCCCCHHHHHHHHHhccccCCCCCCccccCCC
Q 045236 349 AAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRK----AYPDWSPAAIKSALMTTAYNLDNSGENIKDLAS 424 (604)
Q Consensus 349 sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~P~~sp~~Iks~L~~TA~~~~~~~~~~~~~~~ 424 (604)
++..... +.|..++|||||||||||++|||++ .+|+|++.+||++|++||++...
T Consensus 446 St~~~~~-----------~~y~~~SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~~---------- 504 (1354)
T 3lxu_X 446 SVPQFTM-----------SKSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGY---------- 504 (1354)
T ss_dssp ----------------------CCCCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCTT----------
T ss_pred EeecCCC-----------CceecCCCCCHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCCC----------
Confidence 9865321 5789999999999999999999986 79999999999999999998742
Q ss_pred CCCCCCCCCCCcccCccccCCCCceeccCchhhhhccccCCCCc-cceeeeccCCcccccccccCCCCCCCCCCceeeec
Q 045236 425 GEESTPFIHGAGHVDPNRALNPGLVYDIDVSEYVAFLCSIGYDV-KRISVFVREPVSSDICTRALATPGNLNYPSFSVVF 503 (604)
Q Consensus 425 ~~~~~~~~~G~G~id~~~A~~~glv~d~~~~d~~~~~c~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ln~ps~~~~~ 503 (604)
.+++.||+|+||+.+|++..+.|+..+.+++.|+|..+... ..|.+ ... .. +...
T Consensus 505 ---~~~~~~G~GlLDa~~AV~~a~~~~~~p~~~v~f~~~v~~~~~rgIyl--R~~--------------~~--~~~~--- 560 (1354)
T 3lxu_X 505 ---VDPFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADKGIHL--RQG--------------VQ--RNSI--- 560 (1354)
T ss_dssp ---SCTTTSSSSBCCHHHHHHHHHTTTTCGGGGEEEEEEETTTTBSSEEE--CSS--------------CC--CSCE---
T ss_pred ---CCcccccCCEeCHHHHHHHHHhcCCCCccceEEEEEecCCCCCceEE--ecc--------------cc--CCce---
Confidence 24568999999999999999999999999999999987532 22211 000 00 0000
Q ss_pred cCCCceEEEEEEEecc---CCCCceEE--EEEEECCCCcEEEEEcceEEEcccceeEEEEEEEEeeccCCCCCCCceEEE
Q 045236 504 NSNNDVVKYKRVVKNV---GSSVDAVY--EVKVNAPPNVAVNVWPSKLAFSAEKKALAYEITFSSVGLDGLGVSPQQSGS 578 (604)
Q Consensus 504 ~~~~~~~t~~rtv~n~---~~~~~~ty--~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~G~ 578 (604)
..+++++-+..|. .......| ++.+.... --|+ -|..|.+ .++.++|.|.+++... ..+.++++
T Consensus 561 ---~~tv~V~p~f~~~~~~~~~~~i~f~~~l~L~~t~-~wv~-~p~~l~l--~~~~r~~~v~vDp~~L----~~G~h~~~ 629 (1354)
T 3lxu_X 561 ---DYNVYIEPIFYNDKEADPKDKFNFNVRLNLIASQ-PWVQ-CGAFLDL--SYGTRSIAVRVDPTGL----QPGVHSAV 629 (1354)
T ss_dssp ---EEEEEEEEEESSCSCSSSTTCSCCCCEEEEEESS-TTEE-ECSCEEC--TTSCEEEEEEECGGGC----CSEEEEEE
T ss_pred ---EEEEEEeeeecCcccCChhhccceEEEEEEecCC-Ccee-cccceee--cCCCceEEEEECCCCC----CCcceeEE
Confidence 1123333334221 11101122 22232221 1233 3777776 5788999999999987 46899999
Q ss_pred EEEEc-----CCeEEEEEEEEEe
Q 045236 579 IEWSD-----GVHLVRSPIAVRW 596 (604)
Q Consensus 579 l~~~~-----~~~~v~~P~~~~~ 596 (604)
|..-| .+..+|+||.|..
T Consensus 630 v~~~D~~~~~~gp~f~ipvTv~~ 652 (1354)
T 3lxu_X 630 IRAYDTDCVQKGSLFEIPVTVVQ 652 (1354)
T ss_dssp EEEEESSCTTSCCSEEEEEEEEE
T ss_pred EEEEEcCCcccCceEEeeEEEEe
Confidence 98763 5799999998864
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-45 Score=370.30 Aligned_cols=232 Identities=31% Similarity=0.479 Sum_probs=197.5
Q ss_pred CCCCCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEe
Q 045236 8 SACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKI 87 (604)
Q Consensus 8 ~~cn~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv 87 (604)
.|+.-|+.+.++|..+. .++.|.+||||||||||+|... ..| +.||||+|+|+.+|+
T Consensus 37 ~h~~l~~~~~~~~~~~~--------------~~~~d~~gHGT~vAgiia~~~~----~~~-----~~GvAp~a~l~~~~v 93 (269)
T 1gci_A 37 THPDLNIRGGASFVPGE--------------PSTQDGNGHGTHVAGTIAALNN----SIG-----VLGVAPSAELYAVKV 93 (269)
T ss_dssp CCTTCCEEEEEECSTTC--------------CSCSCSSSHHHHHHHHHHCCCS----SSB-----CCCSSTTCEEEEEEC
T ss_pred CCHhhcccCCcccCCCC--------------CCCCCCCCChHHHHHHHhcCcC----CCC-----cEEeCCCCEEEEEEe
Confidence 35555788888886531 2367899999999999999731 112 489999999999999
Q ss_pred ecCCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCcccCCCce
Q 045236 88 CWSPG-CFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWI 166 (604)
Q Consensus 88 ~~~~g-~~~~dil~aid~A~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~v 166 (604)
++..+ +..+++++||+||++++++|||||||... ....+..++.++.++|++||+||||+|......+...+++
T Consensus 94 ~~~~g~~~~~~~~~ai~~a~~~~~~Vin~S~G~~~-----~~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~v 168 (269)
T 1gci_A 94 LGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPS-----PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANA 168 (269)
T ss_dssp BCTTSCBCHHHHHHHHHHHHHTTCSEEEECCCBSS-----CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTE
T ss_pred ECCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCC-----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCe
Confidence 98765 67788999999999999999999999872 2467788888899999999999999998777778888999
Q ss_pred EeeccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhH
Q 045236 167 LTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEK 246 (604)
Q Consensus 167 itVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~ 246 (604)
|+|||.+.
T Consensus 169 i~Vga~~~------------------------------------------------------------------------ 176 (269)
T 1gci_A 169 MAVGATDQ------------------------------------------------------------------------ 176 (269)
T ss_dssp EEEEEECT------------------------------------------------------------------------
T ss_pred EEEEeecC------------------------------------------------------------------------
Confidence 99998421
Q ss_pred HHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCC
Q 045236 247 GAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSR 326 (604)
Q Consensus 247 ~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~ 326 (604)
.+.++.||++
T Consensus 177 ----------------------------------------------------------------------~~~~~~~S~~ 186 (269)
T 1gci_A 177 ----------------------------------------------------------------------NNNRASFSQY 186 (269)
T ss_dssp ----------------------------------------------------------------------TSCBCTTCCC
T ss_pred ----------------------------------------------------------------------CCCCCCCCCC
Confidence 3456789999
Q ss_pred CCCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 045236 327 GPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALM 406 (604)
Q Consensus 327 GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~ 406 (604)
||.+ ||+|||++|+++++. +.|..++|||||||||||++|||+|++|+|++.|||++|+
T Consensus 187 G~~~--------di~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~~t~~~v~~~L~ 245 (269)
T 1gci_A 187 GAGL--------DIVAPGVNVQSTYPG-------------STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLK 245 (269)
T ss_dssp STTE--------EEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred CCCc--------ceEecCCCeEeecCC-------------CCEEEcCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 9865 999999999999876 5799999999999999999999999999999999999999
Q ss_pred hccccCCCCCCccccCCCCCCCCCCCCCCcccCccccCC
Q 045236 407 TTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALN 445 (604)
Q Consensus 407 ~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A~~ 445 (604)
+||+++. ++..||+|+||+.+|++
T Consensus 246 ~tA~~~g---------------~~~~~G~G~vn~~~A~~ 269 (269)
T 1gci_A 246 NTATSLG---------------STNLYGSGLVNAEAATR 269 (269)
T ss_dssp HTSBCCS---------------CHHHHTTCBCCHHHHTC
T ss_pred HhCccCC---------------CCCCcccCccCHHHHcC
Confidence 9999763 23589999999999985
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=369.29 Aligned_cols=238 Identities=31% Similarity=0.404 Sum_probs=191.9
Q ss_pred CCCCCCCCCCCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCe
Q 045236 2 SKDFPASACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKAR 81 (604)
Q Consensus 2 ~~~f~~~~cn~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~ 81 (604)
|-+++-..-++|++..++|.+.. .+|.|..||||||||||+|...+. .| +.||||+|+
T Consensus 41 Gvd~~hp~l~~~~~~~~~~~~~~--------------~~~~d~~gHGT~vAgiia~~~~~~---~g-----~~GvAp~a~ 98 (280)
T 1dbi_A 41 GVDYTHPDLDGKVIKGYDFVDND--------------YDPMDLNNHGTHVAGIAAAETNNA---TG-----IAGMAPNTR 98 (280)
T ss_dssp CCCTTSTTTTTTEEEEEETTTTB--------------SCCCCSSSHHHHHHHHHHCCCSSS---SS-----CCCSSSSCE
T ss_pred CcCCCChhhccCcccceeccCCC--------------CCCCCCCCcHHHHHHHHhCcCCCC---Cc-----ceEeCCCCE
Confidence 33333333467888888887541 346789999999999999986322 12 489999999
Q ss_pred EEEEEeecCCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCcc
Q 045236 82 IAVYKICWSPG-CFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTAT 160 (604)
Q Consensus 82 l~~~kv~~~~g-~~~~dil~aid~A~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~ 160 (604)
|+.+|+++..+ +..+++++||++|++.|++|||||||... ....+..++.++.++|++||+||||+|......+
T Consensus 99 l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~-----~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~P 173 (280)
T 1dbi_A 99 ILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDC-----HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEP 173 (280)
T ss_dssp EEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEECCSSCC-----CCHHHHHHHHHHHHTTCEEEEECCBC--------
T ss_pred EEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC-----CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCc
Confidence 99999998766 67889999999999999999999999872 2467788888899999999999999998766777
Q ss_pred cCCCceEeeccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCC
Q 045236 161 NIAPWILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGG 240 (604)
Q Consensus 161 ~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~ 240 (604)
...+++|+|||++.
T Consensus 174 a~~~~vi~Vga~~~------------------------------------------------------------------ 187 (280)
T 1dbi_A 174 ASYENVIAVGAVDQ------------------------------------------------------------------ 187 (280)
T ss_dssp -CCTTSEEEEEECT------------------------------------------------------------------
T ss_pred cccCCeEEEEeeCC------------------------------------------------------------------
Confidence 78899999998421
Q ss_pred chhhhHHHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCcc
Q 045236 241 NARVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKV 320 (604)
Q Consensus 241 ~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 320 (604)
.+.+
T Consensus 188 ----------------------------------------------------------------------------~~~~ 191 (280)
T 1dbi_A 188 ----------------------------------------------------------------------------YDRL 191 (280)
T ss_dssp ----------------------------------------------------------------------------TSCB
T ss_pred ----------------------------------------------------------------------------CCCc
Confidence 4456
Q ss_pred ccccCCCCCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHH
Q 045236 321 AAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAA 400 (604)
Q Consensus 321 a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~ 400 (604)
+.||++||.+ ||+|||++|+++++. +.|..++|||||||||||++|||++ |.+++.|
T Consensus 192 ~~~S~~G~~~--------dv~ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~--p~~t~~~ 248 (280)
T 1dbi_A 192 ASFSNYGTWV--------DVVAPGVDIVSTITG-------------NRYAYMSGTSMASPHVAGLAALLAS--QGRNNIE 248 (280)
T ss_dssp CTTBCCSTTC--------CEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHH--TTCCHHH
T ss_pred CCCCCCCCCc--------eEEEecCCeEeecCC-------------CCEEEccCHHHHHHHHHHHHHHHHC--CCCCHHH
Confidence 7899999754 999999999999876 5799999999999999999999987 8999999
Q ss_pred HHHHHHhccccCCCCCCccccCCCCCCCCCCCCCCcccCccccCC
Q 045236 401 IKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALN 445 (604)
Q Consensus 401 Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A~~ 445 (604)
||++|++||+++... ...||+|+||+.+|++
T Consensus 249 v~~~L~~ta~~~~~~--------------~~~~G~G~vn~~~A~~ 279 (280)
T 1dbi_A 249 IRQAIEQTADKISGT--------------GTYFKYGRINSYNAVT 279 (280)
T ss_dssp HHHHHHHTSBCCTTB--------------TTTBSSEECCHHHHHT
T ss_pred HHHHHHHhCccCCCC--------------CCcccCCEECHHHHhc
Confidence 999999999987521 2479999999999986
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=368.28 Aligned_cols=235 Identities=30% Similarity=0.438 Sum_probs=196.7
Q ss_pred CCCCCCCCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEE
Q 045236 5 FPASACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAV 84 (604)
Q Consensus 5 f~~~~cn~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ 84 (604)
++..|+.-|++..++|..+. ..+.|.+||||||||||+|... . ..+.||||+|+|+.
T Consensus 35 id~~h~~l~~~~g~~~~~~~--------------~~~~d~~gHGT~vAgiia~~~~----~-----~g~~GvAp~a~l~~ 91 (274)
T 1r0r_E 35 IQASHPDLNVVGGASFVAGE--------------AYNTDGNGHGTHVAGTVAALDN----T-----TGVLGVAPSVSLYA 91 (274)
T ss_dssp CCTTCTTCCEEEEEECSTTC--------------CTTCCSSSHHHHHHHHHHCCSS----S-----SBCCCSSTTSEEEE
T ss_pred CCCCCHhHcCCCCccccCCC--------------CCCCCCCCCHHHHHHHHHccCC----C-----CceEEECCCCEEEE
Confidence 34456666788888887531 2256889999999999999731 1 12489999999999
Q ss_pred EEeecCCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCC----CCc
Q 045236 85 YKICWSPG-CFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGP----FTA 159 (604)
Q Consensus 85 ~kv~~~~g-~~~~dil~aid~A~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~----~~~ 159 (604)
+|++...+ +..+++++||++|++++++|||||||... ....+..++.++.++|++||+||||+|... ...
T Consensus 92 ~~v~~~~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~-----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~ 166 (274)
T 1r0r_E 92 VKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGAS-----GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGY 166 (274)
T ss_dssp EECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSS-----CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCB
T ss_pred EEEECCCCCccHHHHHHHHHHHHHcCCCEEEeCCCCCC-----CcHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccC
Confidence 99998766 67788999999999999999999999872 246778888889999999999999999752 344
Q ss_pred ccCCCceEeeccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecC
Q 045236 160 TNIAPWILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRG 239 (604)
Q Consensus 160 ~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g 239 (604)
+...+++|+||+.+.
T Consensus 167 Pa~~~~vi~Vga~~~----------------------------------------------------------------- 181 (274)
T 1r0r_E 167 PAKYDSVIAVGAVDS----------------------------------------------------------------- 181 (274)
T ss_dssp TTTSTTSEEEEEECT-----------------------------------------------------------------
T ss_pred CCCCCcEEEEEEecC-----------------------------------------------------------------
Confidence 667788999987421
Q ss_pred CchhhhHHHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCc
Q 045236 240 GNARVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPK 319 (604)
Q Consensus 240 ~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 319 (604)
.+.
T Consensus 182 -----------------------------------------------------------------------------~~~ 184 (274)
T 1r0r_E 182 -----------------------------------------------------------------------------NSN 184 (274)
T ss_dssp -----------------------------------------------------------------------------TSC
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 445
Q ss_pred cccccCCCCCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHH
Q 045236 320 VAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPA 399 (604)
Q Consensus 320 ~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~ 399 (604)
++.||++||. |||+|||.+|+++++. +.|..++|||||||||||++|||+|++|+|++.
T Consensus 185 ~~~~S~~G~~--------~di~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~ 243 (274)
T 1r0r_E 185 RASFSSVGAE--------LEVMAPGAGVYSTYPT-------------NTYATLNGTSMASPHVAGAAALILSKHPNLSAS 243 (274)
T ss_dssp BCTTCCCSTT--------EEEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHH
T ss_pred cCccCCCCCC--------ceEEeCCCCeEeecCC-------------CCEEEeccHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 6789999985 4999999999999876 579999999999999999999999999999999
Q ss_pred HHHHHHHhccccCCCCCCccccCCCCCCCCCCCCCCcccCccccCC
Q 045236 400 AIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALN 445 (604)
Q Consensus 400 ~Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A~~ 445 (604)
|||++|++||+++. ++..||+|+||+.+|++
T Consensus 244 ~v~~~L~~tA~~~g---------------~~~~~G~G~~~~~~A~~ 274 (274)
T 1r0r_E 244 QVRNRLSSTATYLG---------------SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp HHHHHHHHTCBCCS---------------CHHHHTTCBCCHHHHTC
T ss_pred HHHHHHHHhCcccC---------------CCCCcccCccCHHHHhC
Confidence 99999999999763 23689999999999985
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-44 Score=363.85 Aligned_cols=231 Identities=29% Similarity=0.397 Sum_probs=196.4
Q ss_pred CCCCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEee
Q 045236 9 ACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKIC 88 (604)
Q Consensus 9 ~cn~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~ 88 (604)
.-.+|++..++|.++. .+|.|.+||||||||||+|...+. .| +.||||+|+|+.+|++
T Consensus 47 ~l~~~~~~~~~~~~~~--------------~~~~d~~gHGT~vAgiia~~~~n~---~g-----~~GvAp~a~l~~~~v~ 104 (279)
T 1thm_A 47 DLAGKVVGGWDFVDND--------------STPQNGNGHGTHCAGIAAAVTNNS---TG-----IAGTAPKASILAVRVL 104 (279)
T ss_dssp TTTTTEEEEEETTTTB--------------SCCCCSSSHHHHHHHHHHCCCSSS---SS-----CCCSSTTCEEEEEECS
T ss_pred chhcCccccccccCCC--------------CCCCCCCCcHHHHHHHHhCccCCC---Cc-----cEEeCCCCEEEEEEee
Confidence 3567899888887541 246789999999999999986432 12 4899999999999999
Q ss_pred cCCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCcccCCCceE
Q 045236 89 WSPG-CFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWIL 167 (604)
Q Consensus 89 ~~~g-~~~~dil~aid~A~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vi 167 (604)
+..+ +..+++++||++|+++|++|||||||... ....+..++.++.++|++||+||||+|.....++...+++|
T Consensus 105 ~~~g~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~-----~~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi 179 (279)
T 1thm_A 105 DNSGSGTWTAVANGITYAADQGAKVISLSLGGTV-----GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAI 179 (279)
T ss_dssp CTTSCCCHHHHHHHHHHHHHTTCSEEEECCCBSS-----CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEE
T ss_pred CCCCCccHHHHHHHHHHHHHCCCCEEEEecCCCC-----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeE
Confidence 8765 67788999999999999999999999872 24678888888999999999999999987777788889999
Q ss_pred eeccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHH
Q 045236 168 TVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKG 247 (604)
Q Consensus 168 tVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~ 247 (604)
+|||++.
T Consensus 180 ~Vga~~~------------------------------------------------------------------------- 186 (279)
T 1thm_A 180 AVASTDQ------------------------------------------------------------------------- 186 (279)
T ss_dssp EEEEECT-------------------------------------------------------------------------
T ss_pred EEEEeCC-------------------------------------------------------------------------
Confidence 9997421
Q ss_pred HHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCC
Q 045236 248 AAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRG 327 (604)
Q Consensus 248 ~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~G 327 (604)
.+.++.||++|
T Consensus 187 ---------------------------------------------------------------------~~~~~~fS~~G 197 (279)
T 1thm_A 187 ---------------------------------------------------------------------NDNKSSFSTYG 197 (279)
T ss_dssp ---------------------------------------------------------------------TSCBCTTCCCC
T ss_pred ---------------------------------------------------------------------CCCcCCcCCCC
Confidence 44567899999
Q ss_pred CCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 045236 328 PNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMT 407 (604)
Q Consensus 328 P~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~ 407 (604)
|.+ ||+|||++|+++++. +.|..++|||||||||||++||| ++|.+++.+||++|++
T Consensus 198 ~~~--------dv~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll--~~p~~t~~~v~~~L~~ 254 (279)
T 1thm_A 198 SWV--------DVAAPGSSIYSTYPT-------------STYASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIEN 254 (279)
T ss_dssp TTC--------CEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHH--HTTTCCHHHHHHHHHH
T ss_pred Cce--------EEEEcCCCeEEEeCC-------------CCEEEcccHHHHHHHHHHHHHHH--HCCCcCHHHHHHHHHH
Confidence 754 999999999999876 57999999999999999999999 5899999999999999
Q ss_pred ccccCCCCCCccccCCCCCCCCCCCCCCcccCccccCC
Q 045236 408 TAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALN 445 (604)
Q Consensus 408 TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A~~ 445 (604)
||+++...+ ..||+|+||+.+|++
T Consensus 255 ta~~~~~~~--------------~~~G~G~vn~~~A~~ 278 (279)
T 1thm_A 255 TADKISGTG--------------TYWAKGRVNAYKAVQ 278 (279)
T ss_dssp TCBCCTTBT--------------TTBSSEECCHHHHHH
T ss_pred hCccCCCCC--------------ccccCCeeCHHHHhc
Confidence 999875321 478999999999975
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-44 Score=365.81 Aligned_cols=237 Identities=31% Similarity=0.445 Sum_probs=197.3
Q ss_pred CCCCCCCCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEE
Q 045236 5 FPASACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAV 84 (604)
Q Consensus 5 f~~~~cn~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~ 84 (604)
++..|+.-|+++.++|..+. .....|..||||||||||+|... . ..+.||||+|+|+.
T Consensus 35 id~~h~~l~~~~g~~~~~~~-------------~~~~~d~~gHGT~vAgiia~~~~----~-----~g~~GvAp~a~l~~ 92 (281)
T 1to2_E 35 IDSSHPDLKVAGGASMVPSE-------------TNPFQDNNSHGTHVAGTVAALNN----S-----IGVLGVAPSASLYA 92 (281)
T ss_dssp CCTTCTTCCEEEEEECCTTC-------------CCTTCCSSSHHHHHHHHHHCCSS----S-----SSBCCSSTTSEEEE
T ss_pred CCCCCHHHcCcCCccccCCC-------------CCCCCCCCCcHHHHHHHHhccCC----C-----CcceeeCCCCEEEE
Confidence 34456777888888886531 01136889999999999999731 1 12489999999999
Q ss_pred EEeecCCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCC----CCc
Q 045236 85 YKICWSPG-CFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGP----FTA 159 (604)
Q Consensus 85 ~kv~~~~g-~~~~dil~aid~A~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~----~~~ 159 (604)
+|++...+ +..+++++||++|++++++|||||||... ....+..++.++.++|++||+||||+|... ..+
T Consensus 93 ~kv~~~~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~-----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~ 167 (281)
T 1to2_E 93 VKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPS-----GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGY 167 (281)
T ss_dssp EECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSC-----CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCB
T ss_pred EEEeCCCCCccHHHHHHHHHHHHHCCCcEEEECCcCCC-----CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcccc
Confidence 99998766 67788999999999999999999999872 246788888889999999999999999762 345
Q ss_pred ccCCCceEeeccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecC
Q 045236 160 TNIAPWILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRG 239 (604)
Q Consensus 160 ~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g 239 (604)
+...+++|+|||.+.
T Consensus 168 Pa~~~~vi~Vga~~~----------------------------------------------------------------- 182 (281)
T 1to2_E 168 PGKYPSVIAVGAVDS----------------------------------------------------------------- 182 (281)
T ss_dssp TTTSTTSEEEEEECT-----------------------------------------------------------------
T ss_pred CcCCCCEEEEEEecC-----------------------------------------------------------------
Confidence 667788999987321
Q ss_pred CchhhhHHHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCc
Q 045236 240 GNARVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPK 319 (604)
Q Consensus 240 ~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 319 (604)
.+.
T Consensus 183 -----------------------------------------------------------------------------~~~ 185 (281)
T 1to2_E 183 -----------------------------------------------------------------------------SNQ 185 (281)
T ss_dssp -----------------------------------------------------------------------------TSC
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 445
Q ss_pred cccccCCCCCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHH
Q 045236 320 VAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPA 399 (604)
Q Consensus 320 ~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~ 399 (604)
++.||++||. |||+|||.+|+++++. +.|..++|||||||||||++|||+|++|+|++.
T Consensus 186 ~~~fS~~G~~--------~di~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~ 244 (281)
T 1to2_E 186 RASFSSVGPE--------LDVMAPGVSIQSTLPG-------------NKYGAYNGTSMASPHVAGAAALILSKHPNWTNT 244 (281)
T ss_dssp BCTTCCCSTT--------CCEEEECSSEEEEETT-------------TEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHH
T ss_pred cCCcCCCCCC--------ceEEecCCCeEeecCC-------------CCEEecCcHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 6789999985 4999999999999876 579999999999999999999999999999999
Q ss_pred HHHHHHHhccccCCCCCCccccCCCCCCCCCCCCCCcccCccccCCC
Q 045236 400 AIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALNP 446 (604)
Q Consensus 400 ~Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A~~~ 446 (604)
|||++|++||+++. +++.||+|+||+.+|+++
T Consensus 245 ~v~~~L~~tA~~~g---------------~~~~~G~G~v~~~~a~~~ 276 (281)
T 1to2_E 245 QVRSSLENTTTKLG---------------DSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp HHHHHHHTTCBCCS---------------CHHHHTTCBCCHHHHTSS
T ss_pred HHHHHHHhhCcccC---------------CCCCcccceecHHHHhhh
Confidence 99999999999763 246899999999999985
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=368.89 Aligned_cols=235 Identities=27% Similarity=0.389 Sum_probs=191.7
Q ss_pred CCCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeec
Q 045236 10 CNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICW 89 (604)
Q Consensus 10 cn~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~ 89 (604)
-.+|+++.++|...+. .+..++.|..||||||||||+|+.. . ..+.||||+|+|+.+|+++
T Consensus 59 l~~~~~~~~~~~~~~~----------~~~~~~~d~~gHGT~VAgiia~~~~----~-----~g~~GvAp~a~l~~~kv~~ 119 (327)
T 2x8j_A 59 LAERIIGGVNLTTDYG----------GDETNFSDNNGHGTHVAGTVAAAET----G-----SGVVGVAPKADLFIIKALS 119 (327)
T ss_dssp TGGGEEEEEECSSGGG----------GCTTCCCCSSSHHHHHHHHHHCCCC----S-----SBCCCSSTTCEEEEEECSC
T ss_pred HhhcccCCccccCCCC----------CCCCCCCCCCCchHHHHHHHhccCC----C-----CCcEeeCCCCEEEEEEeEC
Confidence 3568999999987531 0112367899999999999999842 1 1248999999999999998
Q ss_pred CCC-CCHHHHHHHHHHHHH------CCCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCC-----C
Q 045236 90 SPG-CFDSDILAAMDQAIA------DGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGP-----F 157 (604)
Q Consensus 90 ~~g-~~~~dil~aid~A~~------~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-----~ 157 (604)
..+ +..+++++||++|++ .+++|||||||... ....+..++.++.++|++||+||||+|... .
T Consensus 120 ~~g~~~~~~i~~ai~~a~~~~~~~~~~~~Vin~S~G~~~-----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~ 194 (327)
T 2x8j_A 120 GDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPT-----DSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEF 194 (327)
T ss_dssp TTSEECHHHHHHHHHHHHHCCCTTSCCCSEEEECEEBSC-----CCHHHHHHHHHHHHTTCEEEEECCCT---------T
T ss_pred CCCCcCHHHHHHHHHHHHhhcccccCCceEEEECCCcCC-----CCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCce
Confidence 766 678889999999999 89999999999872 246778888889999999999999999652 3
Q ss_pred CcccCCCceEeeccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEe
Q 045236 158 TATNIAPWILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCD 237 (604)
Q Consensus 158 ~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~ 237 (604)
..+...+++|+|||++.
T Consensus 195 ~~Pa~~~~vi~Vga~~~--------------------------------------------------------------- 211 (327)
T 2x8j_A 195 AYPAAYNEVIAVGAVDF--------------------------------------------------------------- 211 (327)
T ss_dssp CBTTTSTTSEEEEEECT---------------------------------------------------------------
T ss_pred eccccCCCEEEEEEECC---------------------------------------------------------------
Confidence 45667889999998431
Q ss_pred cCCchhhhHHHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCC
Q 045236 238 RGGNARVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPA 317 (604)
Q Consensus 238 ~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~ 317 (604)
.
T Consensus 212 -------------------------------------------------------------------------------~ 212 (327)
T 2x8j_A 212 -------------------------------------------------------------------------------D 212 (327)
T ss_dssp -------------------------------------------------------------------------------T
T ss_pred -------------------------------------------------------------------------------C
Confidence 4
Q ss_pred CccccccCCCCCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHh-----
Q 045236 318 PKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKA----- 392 (604)
Q Consensus 318 ~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~----- 392 (604)
+.++.||++||. |||+|||++|+++++. +.|..++|||||||||||++|||+|+
T Consensus 213 ~~~~~fS~~G~~--------~di~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~ 271 (327)
T 2x8j_A 213 LRLSDFTNTNEE--------IDIVAPGVGIKSTYLD-------------SGYAELSGTAMAAPHVAGALALIINLAEDAF 271 (327)
T ss_dssp CCBSCC---CCC--------CSEEEECSSEEEECST-------------TCEEEEESGGGTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccCCCCC--------ceEecCcCceEeecCC-------------CCEEeecCHHHHHHHHHHHHHHHHHhhhhhc
Confidence 456789999984 5999999999999876 57999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCCCCcccCccccCC
Q 045236 393 YPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALN 445 (604)
Q Consensus 393 ~P~~sp~~Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A~~ 445 (604)
+|.|++.+||++|++||++.. .++..+|+|+||+.+|++
T Consensus 272 ~p~ls~~~v~~~L~~tA~~~g--------------~~~~~~G~G~vd~~~A~~ 310 (327)
T 2x8j_A 272 KRSLSETEIYAQLVRRATPIG--------------FTAQAEGNGFLTLDLVER 310 (327)
T ss_dssp TSCCCHHHHHHHHHTTEECCS--------------SCHHHHTTCEECTTHHHH
T ss_pred CCCCCHHHHHHHHHHhCccCC--------------CCCCceeeeEECHHHHHH
Confidence 999999999999999999763 134689999999999998
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-45 Score=383.03 Aligned_cols=227 Identities=23% Similarity=0.277 Sum_probs=157.5
Q ss_pred CCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC------CCHHHHHHHHHHHHHCCCcE
Q 045236 39 KSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG------CFDSDILAAMDQAIADGVDV 112 (604)
Q Consensus 39 ~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g------~~~~dil~aid~A~~~gvdV 112 (604)
.+|.|.+||||||||||||+... .+.||||+|+|+.+|++.... ....++++||++|++.|++|
T Consensus 101 ~~~~D~~gHGThVAGiiag~~~~----------g~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~a~~~g~~V 170 (357)
T 4h6x_A 101 KDRIVLNDHACHVTSTIVGQEHS----------PVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANI 170 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTS----------SCCCSCTTSEEEEEECTTC----------CHHHHHHHHHHHHTTCSE
T ss_pred CCCcCCCCcHHHHHHHHhccCCC----------CceEeeccceEEeeeecccCCCCccccccHHHHHHHHHHHHHcCCCE
Confidence 34567789999999999997521 248999999999999975422 34456889999999999999
Q ss_pred EEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCcccCCCceEeeccCCCCCccceEEEcCCCcEEEe
Q 045236 113 ISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPADAILGDGRIFGG 192 (604)
Q Consensus 113 In~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g 192 (604)
||||||... ......+.+..++.++.++|++||+||||+|.....++...+++|+|||++.
T Consensus 171 in~S~G~~~-~~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~------------------ 231 (357)
T 4h6x_A 171 IHCAFCRPT-QTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKV------------------ 231 (357)
T ss_dssp EEEC------------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEECT------------------
T ss_pred EeeccccCC-ccccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEecc------------------
Confidence 999999873 3334557788888899999999999999999887777888899999998421
Q ss_pred eeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccccc
Q 045236 193 VSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIA 272 (604)
Q Consensus 193 ~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~ 272 (604)
T Consensus 232 -------------------------------------------------------------------------------- 231 (357)
T 4h6x_A 232 -------------------------------------------------------------------------------- 231 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEeccc
Q 045236 273 DSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWT 352 (604)
Q Consensus 273 ~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~ 352 (604)
.+.++.||+||+.. .||||+|||++|+++++
T Consensus 232 --------------------------------------------~~~~~~fSn~G~~~-----~~~di~APG~~i~s~~~ 262 (357)
T 4h6x_A 232 --------------------------------------------DGTPCHFSNWGGNN-----TKEGILAPGEEILGAQP 262 (357)
T ss_dssp --------------------------------------------TSSBCTTCC---CT-----TTTEEEEECSSEEECCT
T ss_pred --------------------------------------------CCcccccccCCCCC-----CccceeecCCCeEeccC
Confidence 45678999999753 59999999999999987
Q ss_pred CCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHh----CCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCC
Q 045236 353 GSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKA----YPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEES 428 (604)
Q Consensus 353 ~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~----~P~~sp~~Iks~L~~TA~~~~~~~~~~~~~~~~~~~ 428 (604)
.. +.|..++|||||||||||++|||+++ +|.|+++|||++|++||++++.. ...
T Consensus 263 ~~------------~~~~~~sGTS~AaP~vaG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~----------~~~ 320 (357)
T 4h6x_A 263 CT------------EEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPE----------VVE 320 (357)
T ss_dssp TC------------SCCEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC--------------------
T ss_pred CC------------CcccccCcHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCCC----------CCC
Confidence 64 46788999999999999999999954 56899999999999999987532 123
Q ss_pred CCCCCCCcccCccccCC
Q 045236 429 TPFIHGAGHVDPNRALN 445 (604)
Q Consensus 429 ~~~~~G~G~id~~~A~~ 445 (604)
.+.+||+|+||+.+|++
T Consensus 321 ~~~~~G~G~vn~~~A~~ 337 (357)
T 4h6x_A 321 EPERCLRGFVNIPGAMK 337 (357)
T ss_dssp ----CTTCBCCHHHHHH
T ss_pred CcccceeEEecHHHHHH
Confidence 45689999999999997
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-44 Score=383.62 Aligned_cols=236 Identities=30% Similarity=0.404 Sum_probs=197.4
Q ss_pred CCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecC
Q 045236 11 NKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWS 90 (604)
Q Consensus 11 n~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~ 90 (604)
.++++..++|..+.. ..+..++.|.+||||||||||+|... ..| +.||||+|+|+.+|++++
T Consensus 123 ~~~~~~~~~~~~~~~---------~~~~~~~~d~~gHGT~vAgiia~~~n----~~g-----~~GvAp~a~l~~~kv~~~ 184 (395)
T 2z2z_A 123 AANIAWCVSTLRGKV---------STKLRDCADQNGHGTHVIGTIAALNN----DIG-----VVGVAPGVQIYSVRVLDA 184 (395)
T ss_dssp GGGEEEEEECGGGCC---------BCCHHHHBCSSSHHHHHHHHHHCCCS----SSS-----CCCSSTTCEEEEEECSCT
T ss_pred hhccccCccccCCcc---------cCCCCCCCCCCCCHHHHHHHHHeecC----CCc-----eEEECCCCEEEEEEEecC
Confidence 468888888876421 01111257899999999999999831 112 489999999999999987
Q ss_pred CC-CCHHHHHHHHHHHHHC--------------------CCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcC
Q 045236 91 PG-CFDSDILAAMDQAIAD--------------------GVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSA 149 (604)
Q Consensus 91 ~g-~~~~dil~aid~A~~~--------------------gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AA 149 (604)
.+ +..+++++||+||+++ +++|||||||... ....+..++.++.++|++||+||
T Consensus 185 ~g~~~~~~i~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~-----~~~~~~~ai~~a~~~gv~vV~AA 259 (395)
T 2z2z_A 185 RGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA-----DDSYLYDMIIQAYNAGIVIVAAS 259 (395)
T ss_dssp TSEEEHHHHHHHHHHHHHTTTTCSSTTCSSCCTTCTTSCCCSEEEECEEBSC-----CCHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCccHHHHHHHHHHHHhCccccccccccccccccccCCCCeEEEecCCCCC-----CCHHHHHHHHHHHHCCCEEEEEC
Confidence 76 6788999999999998 9999999999872 23567778888899999999999
Q ss_pred CCCCCCCCCcccCCCceEeeccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCc
Q 045236 150 GNSGPGPFTATNIAPWILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKV 229 (604)
Q Consensus 150 GN~G~~~~~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~ 229 (604)
||+|......+...+++|+|||++.
T Consensus 260 GN~g~~~~~~Pa~~~~vi~Vga~~~------------------------------------------------------- 284 (395)
T 2z2z_A 260 GNEGAPSPSYPAAYPEVIAVGAIDS------------------------------------------------------- 284 (395)
T ss_dssp CSSCCSSCCBTTTSTTEEEEEEECT-------------------------------------------------------
T ss_pred CCCCCCCCCCccCCCCEEEEEEecC-------------------------------------------------------
Confidence 9999877777888899999998421
Q ss_pred cccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeee
Q 045236 230 QGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGT 309 (604)
Q Consensus 230 ~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~ 309 (604)
T Consensus 285 -------------------------------------------------------------------------------- 284 (395)
T 2z2z_A 285 -------------------------------------------------------------------------------- 284 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHH
Q 045236 310 VISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALL 389 (604)
Q Consensus 310 ~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl 389 (604)
.+.++.||++|| +|+|||++|+++++. +.|..++|||||||||||++|||
T Consensus 285 -------~~~~a~fS~~G~----------~v~APG~~i~s~~~~-------------~~y~~~sGTS~AaP~VaG~aAll 334 (395)
T 2z2z_A 285 -------NDNIASFSNRQP----------EVSAPGVDILSTYPD-------------DSYETLMGTAMATPHVSGVVALI 334 (395)
T ss_dssp -------TSCBCTTSCSSC----------SEEEECSSEEEEETT-------------TEEEEEESHHHHHHHHHHHHHHH
T ss_pred -------CCCCCcccCCCC----------CEEeCCCCeeeecCC-------------CceEecCCHHHHHHHHHHHHHHH
Confidence 456789999997 569999999999986 57999999999999999999999
Q ss_pred HHhCC-------------CCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCCCCcccCccccCCC
Q 045236 390 RKAYP-------------DWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALNP 446 (604)
Q Consensus 390 ~q~~P-------------~~sp~~Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A~~~ 446 (604)
+|++| .|++.+||++|++||+++... ..+..||+|+||+.+|++.
T Consensus 335 ~~~~p~~~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~~------------g~~~~~G~G~vd~~~A~~~ 392 (395)
T 2z2z_A 335 QAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPT------------GWDADYGYGVVRAALAVQA 392 (395)
T ss_dssp HHHHHHHHSSCCCCCCTTCCSSSSHHHHHHHHSBCCSSS------------SSBTTTBTCBCCHHHHHHH
T ss_pred HHhCccccccccccccccCCCHHHHHHHHHhhccccCCC------------CCCCCccCceeCHHHHHHH
Confidence 99999 999999999999999987432 2346899999999999873
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-44 Score=366.64 Aligned_cols=223 Identities=25% Similarity=0.305 Sum_probs=184.7
Q ss_pred CCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC--CCHHHHHHHHHHHHHCCCcEEEEcccC
Q 045236 42 RDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG--CFDSDILAAMDQAIADGVDVISLSVGA 119 (604)
Q Consensus 42 ~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~dil~aid~A~~~gvdVIn~SlG~ 119 (604)
.|.+||||||||||+|+... .+.||||+|+|+.+|++.+.+ ....++++||+||++.+++|||||||.
T Consensus 46 ~~~~gHGT~VAGiiag~~~~----------~~~GvAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~G~ 115 (282)
T 3zxy_A 46 GFMSAHGTHVASIIFGQPET----------SVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISGGE 115 (282)
T ss_dssp CHHHHHHHHHHHHHHCCTTS----------SSCCSSTTSEEEEEECSCSSSSCCCHHHHHHHHHHHHHTTCSEEEECCCE
T ss_pred CCCCCcccceeehhhccCCc----------eeeeeccccceEeeEeeccccccchHHHHHHHHHHhhccCCeEEeccCcc
Confidence 35679999999999997521 248999999999999986543 567789999999999999999999997
Q ss_pred CCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCcccCCCceEeeccCCCCCccceEEEcCCCcEEEeeeeccCC
Q 045236 120 SGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPADAILGDGRIFGGVSLYAGE 199 (604)
Q Consensus 120 ~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~ 199 (604)
.. ........+..++.++.++|+++|+||||+|......+...+++|+|||.+.
T Consensus 116 ~~-~~~~~~~~~~~ai~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~------------------------- 169 (282)
T 3zxy_A 116 LT-DFGEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDD------------------------- 169 (282)
T ss_dssp EE-SSSCCCHHHHHHHHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEECT-------------------------
T ss_pred cc-ccccccHHHHHHHHHHhhcCceEEEecccCCCccccCccccceeEEEEEEcC-------------------------
Confidence 62 2223345677888889999999999999999887777888899999998421
Q ss_pred CCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccccccccccce
Q 045236 200 SLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPA 279 (604)
Q Consensus 200 ~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~ 279 (604)
T Consensus 170 -------------------------------------------------------------------------------- 169 (282)
T 3zxy_A 170 -------------------------------------------------------------------------------- 169 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEecccCCCCCCC
Q 045236 280 TMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTD 359 (604)
Q Consensus 280 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~ 359 (604)
.+.++.||+||+. ..||||+|||.+|+++++.
T Consensus 170 -------------------------------------~~~~~~~S~~~~~-----~~~~di~ApG~~i~s~~~~------ 201 (282)
T 3zxy_A 170 -------------------------------------HGHPLDFSNWGST-----YEQQGILAPGEDILGAKPG------ 201 (282)
T ss_dssp -------------------------------------TSCBCSSSCCCHH-----HHHHEEEEECSSEEEECTT------
T ss_pred -------------------------------------CCccccccCCCCC-----ccccceeccCcceeeecCC------
Confidence 4556789999864 4689999999999999886
Q ss_pred CCCCCCCccceEecCcccchhHHHHHHHHHHHhC----CCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCCCC
Q 045236 360 LEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAY----PDWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGA 435 (604)
Q Consensus 360 ~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~----P~~sp~~Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~ 435 (604)
+.|..++|||||||||||++|||+|++ |.++|+|||++|++||++++.. .+.....+|+
T Consensus 202 -------~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~vk~~L~~tA~~~~~~----------~~~~~~~~G~ 264 (282)
T 3zxy_A 202 -------GGTERLSGTAFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDDD----------APEQARRCLA 264 (282)
T ss_dssp -------SCEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCBCC-----------------CGGGTT
T ss_pred -------CceeecCCCcccchHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHhhCeeCCCC----------CCCccCceee
Confidence 579999999999999999999999875 7899999999999999876432 2334568999
Q ss_pred cccCccccCC
Q 045236 436 GHVDPNRALN 445 (604)
Q Consensus 436 G~id~~~A~~ 445 (604)
|+||+.+|++
T Consensus 265 G~ln~~~A~~ 274 (282)
T 3zxy_A 265 GRLNVSGAFT 274 (282)
T ss_dssp CBCCHHHHHH
T ss_pred eEeCHHHHHH
Confidence 9999999986
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=373.01 Aligned_cols=244 Identities=18% Similarity=0.132 Sum_probs=198.1
Q ss_pred CCCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeec
Q 045236 10 CNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICW 89 (604)
Q Consensus 10 cn~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~ 89 (604)
-.+|++..++|.... .+.+..++.|..||||||||||+|+ .| +.||||+|+|+.+|++.
T Consensus 61 l~~~~~~~~~~~~~~---------~~~~~~~~~d~~gHGT~vAgiia~~-------~g-----~~GvAp~a~l~~~~v~~ 119 (347)
T 2iy9_A 61 LSDSEFAKFSFTQDG---------SPFPVKKSEALYIHGTAMASLIASR-------YG-----IYGVYPHALISSRRVIP 119 (347)
T ss_dssp GTTCEEEEEECBTTC---------CSSCCSSSHHHHHHHHHHHHHHHCS-------SS-----SCCSSTTCEEEEEECCS
T ss_pred hhcCcccCCcccCCC---------CCCCCCCCCCCCCcHHHHHHHHhcc-------cC-----CcccCCCCEEEEEEEec
Confidence 356788889887642 1122335678899999999999997 12 38999999999999997
Q ss_pred CCCCCHHHHHHHHHHHHHC------CCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCC-------C
Q 045236 90 SPGCFDSDILAAMDQAIAD------GVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPG-------P 156 (604)
Q Consensus 90 ~~g~~~~dil~aid~A~~~------gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~-------~ 156 (604)
+.+.. ++++||++|+++ |++|||||||.. ........+..++.++.++|++||+||||+|.. .
T Consensus 120 ~~~~~--~~~~ai~~a~~~~~~~~~~~~Vin~S~G~~--~~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~ 195 (347)
T 2iy9_A 120 DGVQD--SWIRAIESIMSNVFLAPGEEKIINISGGQK--GVASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQ 195 (347)
T ss_dssp SBCTT--HHHHHHHHHHTCTTSCTTEEEEEEESSCBC--CC-CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTT
T ss_pred CCCHH--HHHHHHHHHHhhhhcccCCceEEEeccccC--CCCCcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCccccc
Confidence 75543 999999999999 999999999987 333456788888889999999999999999975 3
Q ss_pred CCcccCCC----------ceEeeccCCC--CCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCC
Q 045236 157 FTATNIAP----------WILTVGASTI--DREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRL 224 (604)
Q Consensus 157 ~~~~~~ap----------~vitVgAst~--d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~ 224 (604)
..++...+ ++|+|||.+. +....
T Consensus 196 ~~~Pa~~~~~~~~~~~~~~vi~Vga~~~~~~g~~~--------------------------------------------- 230 (347)
T 2iy9_A 196 RIWPAAYHPVSSVNKKQDPVIRVAALAQYRKGETP--------------------------------------------- 230 (347)
T ss_dssp SCBTTTCCCCSHHHHHTCCEEEEEEECCCCTTSCC---------------------------------------------
T ss_pred ccCCCcCccccccccccCCEEEEEEcccCCCCcee---------------------------------------------
Confidence 45566677 8999998543 11000
Q ss_pred CCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEE
Q 045236 225 EPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATI 304 (604)
Q Consensus 225 ~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i 304 (604)
T Consensus 231 -------------------------------------------------------------------------------- 230 (347)
T 2iy9_A 231 -------------------------------------------------------------------------------- 230 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHH
Q 045236 305 VFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSG 384 (604)
Q Consensus 305 ~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG 384 (604)
.. ...++.||++||+ ||||+|||++|+++++. +.|..++|||||||||||
T Consensus 231 ---------~~-~~~~~~fS~~G~~-------~~di~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG 280 (347)
T 2iy9_A 231 ---------VL-HGGGITGSRFGNN-------WVDIAAPGQNITFLRPD-------------AKTGTGSGTSEATAIVSG 280 (347)
T ss_dssp ---------CB-CCCSSSCBCBCTT-------TCSEEEECSSEEEECTT-------------SCEEEECSHHHHHHHHHH
T ss_pred ---------cc-cCCCCCCCCCCCC-------CCEEEeCCCCeEeecCC-------------CCeEeccchHHHHHHHHH
Confidence 00 2345799999985 77999999999999885 579999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCCCCcccCccccCCC
Q 045236 385 LAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALNP 446 (604)
Q Consensus 385 ~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A~~~ 446 (604)
++|||+|++|+|++.+||++|++||++....+ ...+|+|+||+.+|++.
T Consensus 281 ~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~-------------~~~~G~G~ld~~~A~~~ 329 (347)
T 2iy9_A 281 VLAAMTSCNPRATATELKRTLLESADKYPSLV-------------DKVTEGRVLNAEKAISM 329 (347)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHHHHSEECGGGT-------------TTSGGGEECCHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHhCccCCCCC-------------CccccCCEecHHHHHHH
Confidence 99999999999999999999999999875321 25899999999999984
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-42 Score=358.98 Aligned_cols=252 Identities=30% Similarity=0.403 Sum_probs=199.5
Q ss_pred CCCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeec
Q 045236 10 CNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICW 89 (604)
Q Consensus 10 cn~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~ 89 (604)
-.+++...++|.... ..+...+.|..||||||||||+|+...+ ...+.||||+|+|+.+|++.
T Consensus 44 l~~~~~~~~~~~~~~----------~~~~~~~~d~~gHGT~vAgiia~~~~~n-------~~g~~GvAp~a~l~~~~v~~ 106 (310)
T 2ixt_A 44 LVNNVEQCKDFTGAT----------TPINNSCTDRNGHGTHVAGTALADGGSD-------QAGIYGVAPDADLWAYKVLL 106 (310)
T ss_dssp TTTTEEEEEESSSSS----------SCEETCCCCSSSHHHHHHHHHHCBCCTT-------SCSCBCSCTTSEEEEEECSC
T ss_pred HhhcccccccccCCC----------CCCCCCCCCCCCCHHHHHHHHhccCCCC-------CCceEEECCCCEEEEEEEEc
Confidence 356888889987642 1112235788999999999999985221 12248999999999999998
Q ss_pred CCC-CCHHHHHHHHHHHHHCCC-----cEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCC--CCCccc
Q 045236 90 SPG-CFDSDILAAMDQAIADGV-----DVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPG--PFTATN 161 (604)
Q Consensus 90 ~~g-~~~~dil~aid~A~~~gv-----dVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~--~~~~~~ 161 (604)
+.+ +..+++++||++|+++++ +|||||||... ....+..++.++.++|++||+||||+|.. ....+.
T Consensus 107 ~~g~~~~~~~~~ai~~a~~~~~~~~~~~Vin~S~G~~~-----~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa 181 (310)
T 2ixt_A 107 DSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSA-----NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPG 181 (310)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHHTCCEEEEECCCBSS-----CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTT
T ss_pred CCCCCcHHHHHHHHHHHHHhhhccCCCeEEEEcCCCCC-----CCHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcc
Confidence 766 578899999999999888 99999999882 24667888888899999999999999975 345566
Q ss_pred CCCceEeeccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCc
Q 045236 162 IAPWILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGN 241 (604)
Q Consensus 162 ~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~ 241 (604)
..+++|+|||.+...
T Consensus 182 ~~~~vi~Vga~~~~~----------------------------------------------------------------- 196 (310)
T 2ixt_A 182 ALPNAIAVAALENVQ----------------------------------------------------------------- 196 (310)
T ss_dssp TSTTSEEEEEEEEEE-----------------------------------------------------------------
T ss_pred cCCCeeEEEeccccc-----------------------------------------------------------------
Confidence 789999999843100
Q ss_pred hhhhHHHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCC--c
Q 045236 242 ARVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAP--K 319 (604)
Q Consensus 242 ~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~ 319 (604)
. .+ .
T Consensus 197 -------------------------------------------------------------------------~-~g~~~ 202 (310)
T 2ixt_A 197 -------------------------------------------------------------------------Q-NGTYR 202 (310)
T ss_dssp -------------------------------------------------------------------------E-TTEEE
T ss_pred -------------------------------------------------------------------------c-CCCee
Confidence 0 22 5
Q ss_pred cccccCCCCCCCC----CCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCC
Q 045236 320 VAAFSSRGPNSLT----AEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPD 395 (604)
Q Consensus 320 ~a~fSS~GP~~~~----~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~ 395 (604)
++.||++||.... ..+.||||+|||++|+++++. +.|..++|||||||||||++|||+|++|+
T Consensus 203 ~~~~S~~G~~~~~g~~~~~~~~~di~ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~ 269 (310)
T 2ixt_A 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYN-------------GGYNTISGTSMATPHVSGLAAKIWAENPS 269 (310)
T ss_dssp ECTTSCCCCTTTTTSSSCCTTCCCEEEECSSEEEECTT-------------SSEEEECSHHHHHHHHHHHHHHHHHHSTT
T ss_pred eccccCCCCccCCccccccCCCeeEECCCCCEeeecCC-------------CCEEeeccHHHHHHHHHHHHHHHHHhCCC
Confidence 6789999985321 123599999999999999875 57999999999999999999999999999
Q ss_pred CCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCCCCcccCc
Q 045236 396 WSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDP 440 (604)
Q Consensus 396 ~sp~~Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~ 440 (604)
|++.+||++|++||++.+..+.. ...+..++.+|+|++|+
T Consensus 270 lt~~~v~~~L~~tA~~~~~~~~~-----~a~~g~d~~~G~G~~~v 309 (310)
T 2ixt_A 270 LSNTQLRSNLQERAKSVDIKGGY-----GAAIGDDYASGFGFARV 309 (310)
T ss_dssp CCHHHHHHHHHHHHHTSCCCBST-----TCCSSSBTTTBTCBCCC
T ss_pred CCHHHHHHHHHhhCcccCCCCCc-----ccccCCccccccceeec
Confidence 99999999999999987643211 12345668999999986
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-43 Score=366.85 Aligned_cols=236 Identities=30% Similarity=0.409 Sum_probs=195.7
Q ss_pred CCCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeec
Q 045236 10 CNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICW 89 (604)
Q Consensus 10 cn~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~ 89 (604)
-.++++..++|..+.. ..+..++.|.+||||||||||+|.. +..| +.||||+|+|+.+|+++
T Consensus 47 l~~~~~~~~~~~~~~~---------~~~~~~~~d~~gHGT~vAgiia~~~----n~~g-----~~GvAp~a~l~~~~v~~ 108 (320)
T 2z30_A 47 LAANIAWCVSTLRGKV---------STKLRDCADQNGHGTHVIGTIAALN----NDIG-----VVGVAPGVQIYSVRVLD 108 (320)
T ss_dssp TGGGEEEEEECGGGCC---------BCCHHHHBCSSSHHHHHHHHHHCCS----SSBS-----CCCSSTTCEEEEEECSC
T ss_pred HhcccccCccccCCcc---------CCCCCCCCCCCCCHHHHHHHHHccc----CCCc-----eEeeCCCCEEEEEEeeC
Confidence 3567888888876421 0111234689999999999999973 1112 48999999999999998
Q ss_pred CCC-CCHHHHHHHHHHHHHC--------------------CCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEc
Q 045236 90 SPG-CFDSDILAAMDQAIAD--------------------GVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCS 148 (604)
Q Consensus 90 ~~g-~~~~dil~aid~A~~~--------------------gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~A 148 (604)
..+ +..+++++||++|+++ +++|||||||... ....+..++.++.++|++||+|
T Consensus 109 ~~g~~~~~~i~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~-----~~~~~~~ai~~a~~~gi~vV~A 183 (320)
T 2z30_A 109 ARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA-----DDSYLYDMIIQAYNAGIVIVAA 183 (320)
T ss_dssp TTSEEEHHHHHHHHHHHHHTTTTCSCTTSSSCCTTCTTSCCCSEEEECEEBSC-----CCHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCccHHHHHHHHHHHHhCcccccccccccccccccccCCceEEEecCCCCC-----CCHHHHHHHHHHHHCCCEEEEe
Confidence 766 6778899999999987 9999999999882 2456777888889999999999
Q ss_pred CCCCCCCCCCcccCCCceEeeccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCC
Q 045236 149 AGNSGPGPFTATNIAPWILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSK 228 (604)
Q Consensus 149 AGN~G~~~~~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~ 228 (604)
|||+|.....++...+++|+|||.+.
T Consensus 184 AGN~g~~~~~~Pa~~~~vi~Vga~~~------------------------------------------------------ 209 (320)
T 2z30_A 184 SGNEGAPSPSYPAAYPEVIAVGAIDS------------------------------------------------------ 209 (320)
T ss_dssp CCSSCCSSCCBTTTSTTEEEEEEECT------------------------------------------------------
T ss_pred CCCCCCCCCCCcccCCCeEEEEeeCC------------------------------------------------------
Confidence 99999877777888899999998421
Q ss_pred ccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeee
Q 045236 229 VQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRG 308 (604)
Q Consensus 229 ~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 308 (604)
T Consensus 210 -------------------------------------------------------------------------------- 209 (320)
T 2z30_A 210 -------------------------------------------------------------------------------- 209 (320)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHH
Q 045236 309 TVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAAL 388 (604)
Q Consensus 309 ~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aAL 388 (604)
.+.++.||++|| +|+|||++|+++++. +.|..++|||||||||||++||
T Consensus 210 --------~~~~~~~S~~g~----------~v~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAl 258 (320)
T 2z30_A 210 --------NDNIASFSNRQP----------EVSAPGVDILSTYPD-------------DSYETLMGTAMATPHVSGVVAL 258 (320)
T ss_dssp --------TSCBCTTSCSSC----------SEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHH
T ss_pred --------CCCcCcccCCCC----------CEEeCCCCeEEeccC-------------CCeEeccCHHHHHHHHHHHHHH
Confidence 445678999986 679999999999876 5799999999999999999999
Q ss_pred HHHhC-------------CCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCCCCcccCccccCC
Q 045236 389 LRKAY-------------PDWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALN 445 (604)
Q Consensus 389 l~q~~-------------P~~sp~~Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A~~ 445 (604)
|+|++ |+|++.+||++|++||+++... ..+..||+|+||+.+|++
T Consensus 259 l~~~~~~~~~~~~~~~~~p~lt~~~v~~~L~~ta~~~~~~------------g~~~~~G~G~vd~~~A~~ 316 (320)
T 2z30_A 259 IQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPT------------GWDADYGYGVVRAALAVQ 316 (320)
T ss_dssp HHHHHHHHHSSCCCCCCTTCCSTTSHHHHHHHHSBCCSSS------------SSBTTTBTCBCCHHHHHH
T ss_pred HHHhchhhcccccccccCCCCCHHHHHHHHHhhCccCCCC------------CCCCCcCCceeCHHHHHH
Confidence 99999 9999999999999999987432 234679999999999987
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=389.48 Aligned_cols=245 Identities=29% Similarity=0.297 Sum_probs=194.9
Q ss_pred CCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecC------CC-CCHHHHHHHHHHHHHCCCcE
Q 045236 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWS------PG-CFDSDILAAMDQAIADGVDV 112 (604)
Q Consensus 40 sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~------~g-~~~~dil~aid~A~~~gvdV 112 (604)
++.|.+||||||||||||+.+ ..| +.||||+|+|+.+|+++. .+ ...+.+++||+||+++|++|
T Consensus 193 d~~d~~gHGThVAGiIAa~~n----g~g-----v~GVAP~A~I~~vkv~~~~~~~~g~g~~s~~~i~~ai~~A~~~gadV 263 (671)
T 1r6v_A 193 DSSYGGSAGTHVAGTIAAKKD----GKG-----IVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKV 263 (671)
T ss_dssp BCCTTCSHHHHHHHHHHCCCS----SSS-----CCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSE
T ss_pred CCccCCCcchhhhhhhhccCC----CCc-----eEEECCCCEEEEEEeccCccccCCCCccCHHHHHHHHHHHHHcCCCE
Confidence 456789999999999999741 112 489999999999999976 22 34567899999999999999
Q ss_pred EEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCC-CCcccCCCceEeeccCCCCCccceEEEcCCCcEEE
Q 045236 113 ISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGP-FTATNIAPWILTVGASTIDREFPADAILGDGRIFG 191 (604)
Q Consensus 113 In~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~ 191 (604)
||||||.. . ....+..++.+|.++|++||+||||+|... ...+...+++|+|||++.+..
T Consensus 264 IN~SlG~~--~---~s~~l~~Ai~~A~~~GvlvVaAAGN~g~~~~~~yPA~~~~VItVgA~d~~g~-------------- 324 (671)
T 1r6v_A 264 MNHSWGGW--G---YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGG-------------- 324 (671)
T ss_dssp EEECEEBS--C---CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEETT--------------
T ss_pred EEeCCCCC--C---CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCcccCCCeEEEEEEcCCCC--------------
Confidence 99999987 2 246788888899999999999999999764 556678899999998431100
Q ss_pred eeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcccc
Q 045236 192 GVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELI 271 (604)
Q Consensus 192 g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~ 271 (604)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T 1r6v_A 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEecc
Q 045236 272 ADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAW 351 (604)
Q Consensus 272 ~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~ 351 (604)
...++.||++||.. ||+|||++|++++
T Consensus 325 ---------------------------------------------~~~~a~fSn~G~~v--------dv~APG~~I~St~ 351 (671)
T 1r6v_A 325 ---------------------------------------------TFRVAGFSSRSDGV--------SVGAPGVTILSTV 351 (671)
T ss_dssp ---------------------------------------------EEEECSSSCCCTTE--------EEEEECSSEEEEC
T ss_pred ---------------------------------------------ceeeccccCCCCCe--------eEEecCCCEEeec
Confidence 11367899999976 9999999999998
Q ss_pred cCCCCCCC-----CCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCC
Q 045236 352 TGSTGPTD-----LEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGE 426 (604)
Q Consensus 352 ~~~~~~~~-----~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~~~~~~~~~~~~ 426 (604)
+....... .......+.|..++|||||||||||++|||+|++|+|+|.+||++|++||+++...+
T Consensus 352 p~~~~~g~~~~~~~~~~~~~~~y~~~sGTSmAAP~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~g---------- 421 (671)
T 1r6v_A 352 PGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG---------- 421 (671)
T ss_dssp CCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSS----------
T ss_pred CCCCccccccccccccccCCCceEEecCccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCCC----------
Confidence 86321100 001112357999999999999999999999999999999999999999999875322
Q ss_pred CCCCCCCCCcccCccccCCCCceeccCchhh
Q 045236 427 ESTPFIHGAGHVDPNRALNPGLVYDIDVSEY 457 (604)
Q Consensus 427 ~~~~~~~G~G~id~~~A~~~glv~d~~~~d~ 457 (604)
.+..+|+|+||+.+|++..|..+....||
T Consensus 422 --~d~~~G~G~vna~~Al~~~l~~~~~~~~~ 450 (671)
T 1r6v_A 422 --WDHDTGYGLVKLDAALQGPLPTQGGVEEF 450 (671)
T ss_dssp --CBTTTBTCBCCHHHHHHCCCCSSSEEEEE
T ss_pred --CCCCcccceeCHHHHhhhhcCCCCCccce
Confidence 34689999999999999888776655454
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-43 Score=381.88 Aligned_cols=221 Identities=26% Similarity=0.308 Sum_probs=187.1
Q ss_pred CCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCCCCHHHHHHHHHHHHHCCCcEEEEcc
Q 045236 38 SKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSV 117 (604)
Q Consensus 38 ~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~dil~aid~A~~~gvdVIn~Sl 117 (604)
..++.|.+||||||||||+|++. +.||||+|+|+++|++++..+..+++++||++|+++|++||||||
T Consensus 192 ~~~~~d~~gHGT~vAgiiaa~g~------------~~GvAp~a~l~~~kv~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~ 259 (471)
T 3t41_A 192 VHDVNDRKGHGTMVSGQTSANGK------------LIGVAPNNKFTMYRVFGSKKTELLWVSKAIVQAANDGNQVINISV 259 (471)
T ss_dssp TTCCCCSSSHHHHHHHHHHCBSS------------SBCSSTTSCEEEEECCSSSCCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred CCCCcCCCCccchhhheeecCCc------------eeEECCCCeEEEEEeccCCCCcHHHHHHHHHHHHhCCCCEEEeCC
Confidence 34678999999999999998742 489999999999999998778899999999999999999999999
Q ss_pred cCCCCCCC------------CcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCC------------------cccCCCceE
Q 045236 118 GASGYAPQ------------YDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFT------------------ATNIAPWIL 167 (604)
Q Consensus 118 G~~~~~~~------------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~------------------~~~~ap~vi 167 (604)
|... ... ...+.+..++..+.++|++||+||||+|..... .+..++++|
T Consensus 260 G~~~-~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~Pa~~~~vi 338 (471)
T 3t41_A 260 GSYI-ILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVV 338 (471)
T ss_dssp CEEE-EECTTCCCSEESSCHHHHHHHHHHHHHHHHTTCEEEEECCSSCCBTTCHHHHHHTTTCCSSSEEEEETTTSTTEE
T ss_pred CCCC-CCccccccccccccchhHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCcccccccccccccCCceeeccccCCCeE
Confidence 9741 000 123567888888899999999999999976432 456778888
Q ss_pred eeccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHH
Q 045236 168 TVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKG 247 (604)
Q Consensus 168 tVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~ 247 (604)
+|||++.
T Consensus 339 tVgA~~~------------------------------------------------------------------------- 345 (471)
T 3t41_A 339 TVGSTDQ------------------------------------------------------------------------- 345 (471)
T ss_dssp EEEEECT-------------------------------------------------------------------------
T ss_pred EEEeeCC-------------------------------------------------------------------------
Confidence 8887421
Q ss_pred HHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCC
Q 045236 248 AAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRG 327 (604)
Q Consensus 248 ~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~G 327 (604)
.+.++.||++|
T Consensus 346 ---------------------------------------------------------------------~~~~a~fS~~G 356 (471)
T 3t41_A 346 ---------------------------------------------------------------------KSNLSEFSNFG 356 (471)
T ss_dssp ---------------------------------------------------------------------TSSBCTTCCBC
T ss_pred ---------------------------------------------------------------------CCCCCCccCCC
Confidence 45678999999
Q ss_pred CCCCCCCccCCceEeCCCc----------------------EEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHH
Q 045236 328 PNSLTAEILKPDVIAPGVN----------------------ILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGL 385 (604)
Q Consensus 328 P~~~~~~~lKPDI~APG~~----------------------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~ 385 (604)
|+. |||+|||++ |+++++. +.|..++|||||||||||+
T Consensus 357 ~~~-------~di~APG~~i~~~~~~g~~~~~~~~~~~~~~i~s~~~~-------------~~~~~~sGTS~AaP~VAG~ 416 (471)
T 3t41_A 357 MNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANN-------------GRYIYQAGTALATPKVSGA 416 (471)
T ss_dssp TTT-------CCEEEECCCCHHHHHHHHHHHHHTTTHHHHSEEEECTT-------------SSEEEECSHHHHHHHHHHH
T ss_pred CCC-------CeEEecCCCcccccccccccccccccccCceeEecCCC-------------CCEEeecchHHHHHHHHHH
Confidence 974 599999987 8888876 5799999999999999999
Q ss_pred HHHHHHhCC-CCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCCCCcccCccccCCC
Q 045236 386 AALLRKAYP-DWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALNP 446 (604)
Q Consensus 386 aALl~q~~P-~~sp~~Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A~~~ 446 (604)
+|||+|++| .|+|++||++|++||.+... .++..||+|+||+.+|++.
T Consensus 417 aAll~~~~p~~~~~~~v~~~L~~tA~~~~~-------------~~~~~~G~G~vd~~~Al~~ 465 (471)
T 3t41_A 417 LALIIDKYHLEKHPDKAIELLYQHGTSKNN-------------KPFSRYGHGELDVYKALNV 465 (471)
T ss_dssp HHHHHHHHTCTTCHHHHHHHHHHHSBCCSC-------------CCHHHHTTCBBCHHHHTTT
T ss_pred HHHHHHhccCCCCHHHHHHHHHHhCCCCCC-------------CCcCccccChhCHHHHHHH
Confidence 999999999 89999999999999987632 3456899999999999984
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-42 Score=372.22 Aligned_cols=262 Identities=30% Similarity=0.391 Sum_probs=201.1
Q ss_pred CCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecC
Q 045236 11 NKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWS 90 (604)
Q Consensus 11 n~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~ 90 (604)
++||+..++|.+. .++.|..||||||||||+|++. .+.||||+|+|+.+|++..
T Consensus 47 ~~~i~~~~~~~~~---------------~~~~d~~gHGT~VAgiiag~g~-----------~~~GvAp~a~l~~~~v~~~ 100 (434)
T 1wmd_A 47 RGKITALYALGRT---------------NNANDTNGHGTHVAGSVLGNGS-----------TNKGMAPQANLVFQSIMDS 100 (434)
T ss_dssp TTCEEEEEETTTT---------------TCCCCSSSHHHHHHHHHHCCSS-----------SSCCSSTTSEEEEEECCCT
T ss_pred CCCEeeeccccCC---------------CCCCCCCCcHHHHHHHHHcCCC-----------CceeeCCCCEEEEEEeecC
Confidence 5678887777542 2467899999999999999742 1479999999999999987
Q ss_pred CCC---CHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCcccHHHHHHHhh-hcCCcEEEEcCCCCCCCC--CCcccCCC
Q 045236 91 PGC---FDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGA-AQHGVVVSCSAGNSGPGP--FTATNIAP 164 (604)
Q Consensus 91 ~g~---~~~dil~aid~A~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~G~~~--~~~~~~ap 164 (604)
.+. ..+++.++|++|++.|++|||||||... ...+ +....++.++ .++|++||+||||+|... ...+..++
T Consensus 101 ~g~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~-~~~~--~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~ 177 (434)
T 1wmd_A 101 GGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAV-NGAY--TTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAK 177 (434)
T ss_dssp TSSCTTSCSSHHHHHHHHHHTTCSEEEECCCBCC-TTCC--CHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCS
T ss_pred CCccccccHHHHHHHHHHHhcCCeEEEecCCCCc-CCcC--CHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCC
Confidence 663 3567899999999999999999999872 1222 3444555555 589999999999999764 34566889
Q ss_pred ceEeeccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhh
Q 045236 165 WILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARV 244 (604)
Q Consensus 165 ~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~ 244 (604)
++|+|||++..+...
T Consensus 178 ~vitVga~~~~~~~~----------------------------------------------------------------- 192 (434)
T 1wmd_A 178 NAITVGATENLRPSF----------------------------------------------------------------- 192 (434)
T ss_dssp SSEEEEEECCSCGGG-----------------------------------------------------------------
T ss_pred ccEEEecccccCccc-----------------------------------------------------------------
Confidence 999999965322100
Q ss_pred hHHHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCcccccc
Q 045236 245 EKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFS 324 (604)
Q Consensus 245 ~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fS 324 (604)
| . .... .+.++.||
T Consensus 193 ---------~-------------~-------------------------------------------~~~~-~~~~a~fS 206 (434)
T 1wmd_A 193 ---------G-------------S-------------------------------------------YADN-INHVAQFS 206 (434)
T ss_dssp ---------C-------------G-------------------------------------------GGSC-TTSBCTTS
T ss_pred ---------C-------------c-------------------------------------------ccCC-CCcccccc
Confidence 0 0 0001 56789999
Q ss_pred CCCCCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCC-----CHH
Q 045236 325 SRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDW-----SPA 399 (604)
Q Consensus 325 S~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~-----sp~ 399 (604)
++||+. ++++||||+|||++|+++++........ .......|..++|||||||||||++|||+|++|++ +++
T Consensus 207 ~~G~~~--~g~~kpdi~ApG~~i~s~~~~~~~~~~~-~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~ 283 (434)
T 1wmd_A 207 SRGPTK--DGRIKPDVMAPGTFILSARSSLAPDSSF-WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPS 283 (434)
T ss_dssp CCCCCT--TSCCCCCEEEECSSEEEECCTTCCGGGS-SEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHH
T ss_pred CCCCCC--CCCCCceEEcCCCCeEecCCCCCCCccc-ccCCCCceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHH
Confidence 999998 7999999999999999998653210000 00012679999999999999999999999999876 899
Q ss_pred HHHHHHHhccccCCCCCCccccCCCCCCCCCCCCCCcccCccccCCCC
Q 045236 400 AIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALNPG 447 (604)
Q Consensus 400 ~Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A~~~g 447 (604)
+||++|++||+++. ...+...+|||++|+.+|++..
T Consensus 284 ~vk~~L~~tA~~~~------------~~~~~~~~G~G~vd~~~a~~~~ 319 (434)
T 1wmd_A 284 LLKAALIAGAADIG------------LGYPNGNQGWGRVTLDKSLNVA 319 (434)
T ss_dssp HHHHHHHHHCBCCS------------SCSSCTTTTTCBCCHHHHHTCE
T ss_pred HHHHHHHcCCcccC------------CCCCCccCCcCeEeHHHhcccc
Confidence 99999999998752 1245679999999999999754
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=358.05 Aligned_cols=224 Identities=25% Similarity=0.295 Sum_probs=187.3
Q ss_pred CCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC--CCHHHHHHHHHHHHHCCCcEEEEccc
Q 045236 41 PRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG--CFDSDILAAMDQAIADGVDVISLSVG 118 (604)
Q Consensus 41 p~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~dil~aid~A~~~gvdVIn~SlG 118 (604)
..|.+||||||||||+|+.. +.+.||||+|+|+.+|++.+.+ ....++++||++|++++++|||+|||
T Consensus 58 ~~d~~gHGThVAGiiag~~~----------~~~~GVAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~g~~vi~~s~g 127 (306)
T 4h6w_A 58 NGSMSTHGTHVASIIFGQHD----------SPVTGIAPQCRGLIVPVFADESLKLSQLDLSRAIEQAVNNGANIINVSAG 127 (306)
T ss_dssp -CCCCHHHHHHHHHHHCCTT----------SSSCCSSTTSEEEECCCCCSSSCCCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred CCCCCCchHHHHHHHHcccc----------CCcceeccccccceeeccccccccchHHHHHHHHHHhhcccceeeecccc
Confidence 34778999999999999742 1248999999999999986543 66778999999999999999999999
Q ss_pred CCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCcccCCCceEeeccCCCCCccceEEEcCCCcEEEeeeeccC
Q 045236 119 ASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPADAILGDGRIFGGVSLYAG 198 (604)
Q Consensus 119 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~~~ 198 (604)
... ........+..++.++.++|++||++|||+|......+...+++|+|||.+.
T Consensus 128 ~~~-~~~~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~------------------------ 182 (306)
T 4h6w_A 128 QLT-DAGEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDD------------------------ 182 (306)
T ss_dssp EEE-SSSCCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECT------------------------
T ss_pred ccc-cCCCccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecC------------------------
Confidence 753 2333456678888899999999999999999877777778889999997421
Q ss_pred CCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccccccccccc
Q 045236 199 ESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIADSHLIP 278 (604)
Q Consensus 199 ~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip 278 (604)
T Consensus 183 -------------------------------------------------------------------------------- 182 (306)
T 4h6w_A 183 -------------------------------------------------------------------------------- 182 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEecccCCCCCC
Q 045236 279 ATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPT 358 (604)
Q Consensus 279 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~ 358 (604)
.+.++.||++|+. ..||||+|||++|+++++.
T Consensus 183 --------------------------------------~~~~~~~s~~g~~-----~~~~di~APG~~i~s~~~~----- 214 (306)
T 4h6w_A 183 --------------------------------------QGKPVDFSNWGDA-----YQKQGILAPGKDILGAKPN----- 214 (306)
T ss_dssp --------------------------------------TSCBCSSSCBCHH-----HHHHEEEEECSSEEEECTT-----
T ss_pred --------------------------------------CCCccccccccCC-----cCcceeecCCcCcccccCC-----
Confidence 4456788999864 4689999999999999876
Q ss_pred CCCCCCCCccceEecCcccchhHHHHHHHHHHHh----CCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCCC
Q 045236 359 DLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKA----YPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHG 434 (604)
Q Consensus 359 ~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~----~P~~sp~~Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G 434 (604)
+.|..++|||||||||||++|||+++ +|.|+|+|||++|++||+++...+ ..+...||
T Consensus 215 --------~~~~~~sGTS~AaP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~~----------~~~~~~~G 276 (306)
T 4h6w_A 215 --------GGTIRLSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPKD----------TDDQSRCL 276 (306)
T ss_dssp --------SCEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTTT----------CSCGGGGT
T ss_pred --------CceeccCCCcchhHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCCCC----------CCCCCCcc
Confidence 57999999999999999999999864 699999999999999999875432 22335799
Q ss_pred CcccCccccCC
Q 045236 435 AGHVDPNRALN 445 (604)
Q Consensus 435 ~G~id~~~A~~ 445 (604)
+|+||+.+|++
T Consensus 277 ~G~ln~~~Av~ 287 (306)
T 4h6w_A 277 MGKLNILDAIE 287 (306)
T ss_dssp TCBCCHHHHHH
T ss_pred eeecCHHHHHH
Confidence 99999999997
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=357.03 Aligned_cols=226 Identities=30% Similarity=0.387 Sum_probs=187.5
Q ss_pred CCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCCCCHHHHHHHHHHHHH----------CC
Q 045236 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIA----------DG 109 (604)
Q Consensus 40 sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~dil~aid~A~~----------~g 109 (604)
++.|..||||||||||+|...+.. | +.||||+|+|+.+|++...++..+++++||++|++ .+
T Consensus 97 ~~~d~~gHGT~vAgiia~~~~~~~---g-----~~GvAp~a~l~~~~v~~~~~~~~~~~~~ai~~a~~~~~~~~~~~~~~ 168 (340)
T 3lpc_A 97 ERSDSSWHGSHVAGTIAAVTNNRI---G-----VAGVAYGAKVVPVRALGRCGGYDSDISDGLYWAAGGRIAGIPENRNP 168 (340)
T ss_dssp SCBCCCCHHHHHHHHHHCCCSSSS---S-----CCCTTTTSEEEEEECCBTTBCCHHHHHHHHHHHHTCCCTTSCCCSSC
T ss_pred CCCCCCCCHHHHHHHHHccCCCCC---c-----ceeecCCCEEEEEEEecCCCCcHHHHHHHHHHHhcccccccccccCC
Confidence 457889999999999999864322 2 48999999999999998877889999999999998 89
Q ss_pred CcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCC-CcccCCCceEeeccCCCCCccceEEEcCCCc
Q 045236 110 VDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPF-TATNIAPWILTVGASTIDREFPADAILGDGR 188 (604)
Q Consensus 110 vdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~ap~vitVgAst~d~~~~~~~~~~~~~ 188 (604)
++|||||||.. . .....+..++.++.++|++||+||||+|.... ..+...+++|+|||++.
T Consensus 169 ~~Vin~S~G~~--~--~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~-------------- 230 (340)
T 3lpc_A 169 AKVINMSLGSD--G--QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTS-------------- 230 (340)
T ss_dssp CSEEEECCCEE--S--CCCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEECT--------------
T ss_pred CeEEEeCcCCC--C--CcchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCCC--------------
Confidence 99999999986 2 22456777788888999999999999987643 35667889999998421
Q ss_pred EEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCc
Q 045236 189 IFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGE 268 (604)
Q Consensus 189 ~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~ 268 (604)
T Consensus 231 -------------------------------------------------------------------------------- 230 (340)
T 3lpc_A 231 -------------------------------------------------------------------------------- 230 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEE
Q 045236 269 ELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNIL 348 (604)
Q Consensus 269 ~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~ 348 (604)
.+.++.||++|| ||||+|||++|+
T Consensus 231 ------------------------------------------------~~~~~~~S~~g~--------~~di~ApG~~i~ 254 (340)
T 3lpc_A 231 ------------------------------------------------RGIRASFSNYGV--------DVDLAAPGQDIL 254 (340)
T ss_dssp ------------------------------------------------TSSBCTTCCBST--------TCCEEEECSSEE
T ss_pred ------------------------------------------------CCCcCCCCCCCC--------CceEEecCCCee
Confidence 456688999997 569999999999
Q ss_pred ecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHh-C---CCCCHHHHHHHHHhccccCCCCCCccccCCC
Q 045236 349 AAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKA-Y---PDWSPAAIKSALMTTAYNLDNSGENIKDLAS 424 (604)
Q Consensus 349 sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~-~---P~~sp~~Iks~L~~TA~~~~~~~~~~~~~~~ 424 (604)
++++..... .....|..++|||||||||||++|||+|+ + |.|++++||++|++||++...
T Consensus 255 s~~~~~~~~------~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~L~~tA~~~~~---------- 318 (340)
T 3lpc_A 255 STVDSGTRR------PVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNG---------- 318 (340)
T ss_dssp EEEESCSSS------CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCSS----------
T ss_pred cccCCCCcC------CCCCcceecccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHhcCCcCCC----------
Confidence 998764211 11256999999999999999999999998 5 999999999999999998742
Q ss_pred CCCCCCCCCCCcccCccccCCC
Q 045236 425 GEESTPFIHGAGHVDPNRALNP 446 (604)
Q Consensus 425 ~~~~~~~~~G~G~id~~~A~~~ 446 (604)
.....+|+|+||+.+|++.
T Consensus 319 ---~~~~~~G~G~vd~~~Av~~ 337 (340)
T 3lpc_A 319 ---RLDRALGSGIVDAEAAVNS 337 (340)
T ss_dssp ---CCSSCCCSSBCCHHHHHHH
T ss_pred ---CCCCCcccceecHHHHHHH
Confidence 2345899999999999874
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-40 Score=336.17 Aligned_cols=207 Identities=30% Similarity=0.439 Sum_probs=177.0
Q ss_pred CCCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeec
Q 045236 10 CNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICW 89 (604)
Q Consensus 10 cn~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~ 89 (604)
-.++++..++|.+.. .++.|..||||||||||+|+. .||||+|+|+.+|+++
T Consensus 47 l~~~~~~~~~~~~~~--------------~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~l~~~kv~~ 98 (284)
T 1sh7_A 47 FGGRSVSGYDFVDND--------------ADSSDCNGHGTHVAGTIGGSQ--------------YGVAKNVNIVGVRVLS 98 (284)
T ss_dssp TTTCEEEEEETTTTB--------------SCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECBC
T ss_pred HcCCccccccccCCC--------------CCCCCCCCcHHHHHHHHhccc--------------CCcCCCCEEEEEEeeC
Confidence 356777778876531 246789999999999999873 6999999999999998
Q ss_pred CCC-CCHHHHHHHHHHHHHC--CCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCC-CCcccCCCc
Q 045236 90 SPG-CFDSDILAAMDQAIAD--GVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGP-FTATNIAPW 165 (604)
Q Consensus 90 ~~g-~~~~dil~aid~A~~~--gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~ 165 (604)
+.+ +..+++++||+|++++ +++|||||||.. ....+..++.++.++|++||+||||+|... ...+...++
T Consensus 99 ~~g~~~~~~~~~ai~~a~~~~~~~~Vin~S~G~~------~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~ 172 (284)
T 1sh7_A 99 CSGSGTTSGVISGVDWVAQNASGPSVANMSLGGG------QSTALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPS 172 (284)
T ss_dssp TTSCBCHHHHHHHHHHHHHHCCSSEEEEECCCBS------CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTT
T ss_pred CCCCcCHHHHHHHHHHHHhCCCCCcEEEeCCCCC------CCHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCC
Confidence 766 6788999999999984 799999999987 236778888889999999999999999754 345667899
Q ss_pred eEeeccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhh
Q 045236 166 ILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVE 245 (604)
Q Consensus 166 vitVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~ 245 (604)
+|+|||++.
T Consensus 173 vi~Vga~~~----------------------------------------------------------------------- 181 (284)
T 1sh7_A 173 GVTVGSTTS----------------------------------------------------------------------- 181 (284)
T ss_dssp SEEEEEECT-----------------------------------------------------------------------
T ss_pred eEEEEEecC-----------------------------------------------------------------------
Confidence 999998421
Q ss_pred HHHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccC
Q 045236 246 KGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSS 325 (604)
Q Consensus 246 ~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS 325 (604)
.+.++.||+
T Consensus 182 -----------------------------------------------------------------------~~~~~~~S~ 190 (284)
T 1sh7_A 182 -----------------------------------------------------------------------SDSRSSFSN 190 (284)
T ss_dssp -----------------------------------------------------------------------TSBBCTTCC
T ss_pred -----------------------------------------------------------------------CCCcCcccC
Confidence 445678999
Q ss_pred CCCCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHH
Q 045236 326 RGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSAL 405 (604)
Q Consensus 326 ~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L 405 (604)
+||.+ ||+|||++|+++++. +.|..++|||||||||||++|||+|++|+|+++|||++|
T Consensus 191 ~G~~~--------di~ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L 249 (284)
T 1sh7_A 191 WGSCV--------DLFAPGSQIKSAWYD-------------GGYKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLL 249 (284)
T ss_dssp BSTTC--------CEEEECSSEEEECTT-------------SSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred CCCcc--------EEEeccCCeEEecCC-------------CCEEEccChHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 99865 999999999999876 579999999999999999999999999999999999999
Q ss_pred HhccccCC
Q 045236 406 MTTAYNLD 413 (604)
Q Consensus 406 ~~TA~~~~ 413 (604)
++||++..
T Consensus 250 ~~tA~~~~ 257 (284)
T 1sh7_A 250 NSRASENK 257 (284)
T ss_dssp HHHSEESC
T ss_pred HhhCccCC
Confidence 99999764
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=337.11 Aligned_cols=201 Identities=34% Similarity=0.401 Sum_probs=173.4
Q ss_pred CCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-CCHHHHHHHHHHHHHCCC-------cE
Q 045236 41 PRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDILAAMDQAIADGV-------DV 112 (604)
Q Consensus 41 p~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~aid~A~~~gv-------dV 112 (604)
+.|.+||||||||||+|+. .||||+|+|+.+|++++.+ +..+++++||++++++++ +|
T Consensus 63 ~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~~~V 128 (279)
T 2pwa_A 63 SRDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVV 128 (279)
T ss_dssp SSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEE
T ss_pred CCCCCCCHHHHHHHHHhcc--------------cccCCCCEEEEEEeEcCCCCcCHHHHHHHHHHHHhcCccccCCCccE
Confidence 5688999999999999873 7999999999999998776 788899999999999887 99
Q ss_pred EEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCC-CcccCCCceEeeccCCCCCccceEEEcCCCcEEE
Q 045236 113 ISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPF-TATNIAPWILTVGASTIDREFPADAILGDGRIFG 191 (604)
Q Consensus 113 In~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~ 191 (604)
||||||.. ....+..++.++.++|++||+||||+|.... ..+...+++|+|||++.
T Consensus 129 in~S~G~~------~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~----------------- 185 (279)
T 2pwa_A 129 ASLSLGGG------YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDR----------------- 185 (279)
T ss_dssp EEECCCEE------CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECT-----------------
T ss_pred EEecCCCC------CCHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEecC-----------------
Confidence 99999976 2367888888899999999999999997542 34667899999998421
Q ss_pred eeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcccc
Q 045236 192 GVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELI 271 (604)
Q Consensus 192 g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~ 271 (604)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T 2pwa_A 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEecc
Q 045236 272 ADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAW 351 (604)
Q Consensus 272 ~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~ 351 (604)
.+.++.||++||.+ ||+|||++|++++
T Consensus 186 ---------------------------------------------~~~~~~~S~~G~~~--------di~APG~~i~s~~ 212 (279)
T 2pwa_A 186 ---------------------------------------------YDRRSSFSNYGSVL--------DIFGPGTDILSTW 212 (279)
T ss_dssp ---------------------------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEEE
T ss_pred ---------------------------------------------CCCcCCcCCCCCcc--------eEEEecCCeEEee
Confidence 44567899999864 9999999999998
Q ss_pred cCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCC
Q 045236 352 TGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPF 431 (604)
Q Consensus 352 ~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~~ 431 (604)
+. +.|..++|||||||||||++|||+|+ |++++.|||++|++||++... .
T Consensus 213 ~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~-p~lt~~~v~~~L~~tA~~~~~----------------~ 262 (279)
T 2pwa_A 213 IG-------------GSTRSISGTSMATPHVAGLAAYLMTL-GKTTAASACRYIADTANKGDL----------------S 262 (279)
T ss_dssp TT-------------TEEEEECSHHHHHHHHHHHHHHHHHT-TSCCTTTHHHHHHHHSEESCC----------------B
T ss_pred cC-------------CCEEEcCChHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCccccc----------------C
Confidence 76 57999999999999999999999999 999999999999999997632 2
Q ss_pred CCCCcccCcc
Q 045236 432 IHGAGHVDPN 441 (604)
Q Consensus 432 ~~G~G~id~~ 441 (604)
.+|+|..|+.
T Consensus 263 ~~~~g~~n~l 272 (279)
T 2pwa_A 263 NIPFGTVNLL 272 (279)
T ss_dssp SCCTTSCCEE
T ss_pred CCCCCCccEe
Confidence 4677777764
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=332.15 Aligned_cols=208 Identities=30% Similarity=0.421 Sum_probs=175.9
Q ss_pred CCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecC
Q 045236 11 NKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWS 90 (604)
Q Consensus 11 n~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~ 90 (604)
.++++..++|.++ ..++.|..||||||||||+|+. .||||+|+|+.+|++++
T Consensus 50 ~~~~~~~~d~~~~--------------~~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~ 101 (278)
T 2b6n_A 50 GGRASSGYDFIDN--------------DYDATDCNGHGTHVAGTIGGST--------------YGVAKNVNVVGVRVLNC 101 (278)
T ss_dssp TTCEEEEEETTTT--------------BSCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCT
T ss_pred hcccccCeecCCC--------------CCCCCCCCCcHHHHHHHHHCCC--------------cCCCCCCeEEEEEEECC
Confidence 4567777777653 1346789999999999999873 69999999999999987
Q ss_pred CC-CCHHHHHHHHHHHHH--CCCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCC-CcccCCCce
Q 045236 91 PG-CFDSDILAAMDQAIA--DGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPF-TATNIAPWI 166 (604)
Q Consensus 91 ~g-~~~~dil~aid~A~~--~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~ap~v 166 (604)
.+ +..+++++||+|+++ .+++|||||||.. . ...+..++.++.++|++||+||||+|.... ..+...+++
T Consensus 102 ~g~~~~~~~~~ai~~a~~~~~g~~Vin~S~G~~--~----~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~v 175 (278)
T 2b6n_A 102 SGSGSNSGVIAGINWVKNNASGPAVANMSLGGG--A----SQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADA 175 (278)
T ss_dssp TSCCCHHHHHHHHHHHHHHCCSSEEEEECCCEE--C----CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTS
T ss_pred CCCccHHHHHHHHHHHHhCCCCCeEEEECCCCC--c----CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCe
Confidence 65 678899999999997 5999999999987 2 366778888889999999999999997543 345678899
Q ss_pred EeeccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhH
Q 045236 167 LTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEK 246 (604)
Q Consensus 167 itVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~ 246 (604)
|+|||.+.
T Consensus 176 i~Vga~~~------------------------------------------------------------------------ 183 (278)
T 2b6n_A 176 ITVGSTTS------------------------------------------------------------------------ 183 (278)
T ss_dssp EEEEEECT------------------------------------------------------------------------
T ss_pred EEEEeeCC------------------------------------------------------------------------
Confidence 99997421
Q ss_pred HHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCC
Q 045236 247 GAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSR 326 (604)
Q Consensus 247 ~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~ 326 (604)
.+.++.||++
T Consensus 184 ----------------------------------------------------------------------~~~~~~~S~~ 193 (278)
T 2b6n_A 184 ----------------------------------------------------------------------NDSRSSFSNY 193 (278)
T ss_dssp ----------------------------------------------------------------------TSBBCTTCCB
T ss_pred ----------------------------------------------------------------------CCCcCCcCCC
Confidence 4456789999
Q ss_pred CCCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 045236 327 GPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALM 406 (604)
Q Consensus 327 GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~ 406 (604)
||. |||+|||++|+++++... ..|..++|||||||||||++|||+|++|+|++.|||++|+
T Consensus 194 G~~--------~di~ApG~~i~s~~~~~~-----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~ 254 (278)
T 2b6n_A 194 GTC--------LDIYAPGSSITSSWYTSN-----------SATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLK 254 (278)
T ss_dssp STT--------CCEEEECSSEEEECTTST-----------TCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred CCC--------CeEEeCCCCeECcccCCC-----------CCEEEeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 985 499999999999986531 5789999999999999999999999999999999999999
Q ss_pred hccccCC
Q 045236 407 TTAYNLD 413 (604)
Q Consensus 407 ~TA~~~~ 413 (604)
+||++..
T Consensus 255 ~tA~~~~ 261 (278)
T 2b6n_A 255 TRATADK 261 (278)
T ss_dssp HHSEESC
T ss_pred HhCccCC
Confidence 9998754
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-39 Score=328.53 Aligned_cols=207 Identities=29% Similarity=0.402 Sum_probs=176.3
Q ss_pred CCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecC
Q 045236 11 NKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWS 90 (604)
Q Consensus 11 n~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~ 90 (604)
.++++..++|... ++.|.+||||||||||+|.. .||||+|+|+.+|++.+
T Consensus 50 ~~~~~~~~~~~~~----------------~~~d~~gHGT~vAgiiag~~--------------~GvAp~a~l~~~~v~~~ 99 (276)
T 4dzt_A 50 GGRARVGYDALGG----------------NGQDCNGHGTHVAGTIGGVT--------------YGVAKAVNLYAVRVLDC 99 (276)
T ss_dssp TTCEEEEEETTSS----------------CSCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCT
T ss_pred ccCeeccccCCCC----------------CCCCCCCCHHHHHHHHHccc--------------cCCCCCCEEEEEEEeCC
Confidence 4566666666542 35688999999999999873 69999999999999987
Q ss_pred CC-CCHHHHHHHHHHHHHC--CCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCC-cccCCCce
Q 045236 91 PG-CFDSDILAAMDQAIAD--GVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFT-ATNIAPWI 166 (604)
Q Consensus 91 ~g-~~~~dil~aid~A~~~--gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~-~~~~ap~v 166 (604)
.+ ...++++++|+++++. +++|||||||.. . ...+..++.++.++|+++|+||||+|..... .+...+++
T Consensus 100 ~~~~~~~~~~~ai~~~~~~~~~~~vin~S~g~~--~----~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~v 173 (276)
T 4dzt_A 100 NGSGSTSGVIAGVDWVTRNHRRPAVANMSLGGG--V----STALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEA 173 (276)
T ss_dssp TSCCCHHHHHHHHHHHHHHCCSSEEEEECCCEE--C----CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTS
T ss_pred CCCcCHHHHHHHHHHHHhcCCCCeEEEECCCCC--C----CHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCE
Confidence 66 7788899999999987 899999999987 2 4678888888999999999999999975433 36678889
Q ss_pred EeeccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhH
Q 045236 167 LTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEK 246 (604)
Q Consensus 167 itVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~ 246 (604)
|+|||.+.
T Consensus 174 i~Vga~~~------------------------------------------------------------------------ 181 (276)
T 4dzt_A 174 LTVGATTS------------------------------------------------------------------------ 181 (276)
T ss_dssp EEEEEECT------------------------------------------------------------------------
T ss_pred EEEEEECC------------------------------------------------------------------------
Confidence 99997321
Q ss_pred HHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCC
Q 045236 247 GAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSR 326 (604)
Q Consensus 247 ~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~ 326 (604)
.+.++.||++
T Consensus 182 ----------------------------------------------------------------------~~~~~~~S~~ 191 (276)
T 4dzt_A 182 ----------------------------------------------------------------------SDARASFSNY 191 (276)
T ss_dssp ----------------------------------------------------------------------TSBBCTTCCB
T ss_pred ----------------------------------------------------------------------CCCcCCcCCC
Confidence 4566889999
Q ss_pred CCCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 045236 327 GPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALM 406 (604)
Q Consensus 327 GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~ 406 (604)
||.. ||+|||++|+++++... ..|..++|||||||||||++|||+|++|+|++++||++|+
T Consensus 192 g~~~--------dv~ApG~~i~s~~~~~~-----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~ 252 (276)
T 4dzt_A 192 GSCV--------DLFAPGASIPSAWYTSD-----------TATQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAIL 252 (276)
T ss_dssp STTC--------CEEEECSSEEEECTTSS-----------SCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred CCCc--------eEEeCCCCeEccccCCC-----------CceEEeeEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 9976 99999999999987632 5799999999999999999999999999999999999999
Q ss_pred hccccCCC
Q 045236 407 TTAYNLDN 414 (604)
Q Consensus 407 ~TA~~~~~ 414 (604)
+||++...
T Consensus 253 ~tA~~~~~ 260 (276)
T 4dzt_A 253 NGATTGRL 260 (276)
T ss_dssp HHSEESCC
T ss_pred hhCcCCcc
Confidence 99998753
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-39 Score=352.67 Aligned_cols=241 Identities=16% Similarity=0.124 Sum_probs=182.9
Q ss_pred CCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCCCCHHHHHHHHHHHHH-CCCcEEEEccc
Q 045236 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIA-DGVDVISLSVG 118 (604)
Q Consensus 40 sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~dil~aid~A~~-~gvdVIn~SlG 118 (604)
++.|.+||||||||||||...+.. | +.||||+|+|+.+|+++ +..+++++|++++++ ++++|||||||
T Consensus 80 ~~~d~~gHGT~vAGiiaa~~~n~~---g-----~~GvAp~a~i~~~rv~~---g~~~~~~~ai~~a~~~~~~~Vin~S~G 148 (471)
T 1p8j_A 80 TQMNDNRHGTRCAGEVAAVANNGV---C-----GVGVAYNARIGGVRMLD---GEVTDAVEARSLGLNPNHIHIYSASWG 148 (471)
T ss_dssp CTTCTTCHHHHHHHHHHCCSSSSS---S-----CCCTTTTSEEEEEECSS---SCCCHHHHHHHHTSCTTTCCEEEECCB
T ss_pred CCCCCCCcHHHHHHHHHeeccCCC---C-----CEEECCCCeEEEEEccC---CchhHHHHHHHhhhccCCCeEEEeccC
Confidence 567899999999999999753221 2 48999999999999985 345689999999999 99999999999
Q ss_pred CCCCCCC--CcccHHHHHHHhhh-----cCCcEEEEcCCCCCCCCCC----cccCCCceEeeccCCCCCccceEEEcCCC
Q 045236 119 ASGYAPQ--YDQDSIAIGSFGAA-----QHGVVVSCSAGNSGPGPFT----ATNIAPWILTVGASTIDREFPADAILGDG 187 (604)
Q Consensus 119 ~~~~~~~--~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~G~~~~~----~~~~ap~vitVgAst~d~~~~~~~~~~~~ 187 (604)
....... .....+..++.++. .+|++||+||||+|..... ....++++|+|||.+.
T Consensus 149 ~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~~------------- 215 (471)
T 1p8j_A 149 PEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQ------------- 215 (471)
T ss_dssp SCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECT-------------
T ss_pred cCCCCCcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecccC-------------
Confidence 8621110 11233444555554 3699999999999975322 1224578999997431
Q ss_pred cEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCC
Q 045236 188 RIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESG 267 (604)
Q Consensus 188 ~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~ 267 (604)
T Consensus 216 -------------------------------------------------------------------------------- 215 (471)
T 1p8j_A 216 -------------------------------------------------------------------------------- 215 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcE
Q 045236 268 EELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNI 347 (604)
Q Consensus 268 ~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I 347 (604)
.+.++.||++||.. ....+|...+||..|
T Consensus 216 -------------------------------------------------~g~~a~~S~~g~~~--~~~~~~~~~~~g~~i 244 (471)
T 1p8j_A 216 -------------------------------------------------FGNVPWYSEACSST--LATTYSSGNQNEKQI 244 (471)
T ss_dssp -------------------------------------------------TSCCCTTCCBCTTC--CEEEECCCSTTSCCE
T ss_pred -------------------------------------------------CCCcccccCCCCcc--eEEeCCCCCCCCCCE
Confidence 44567899999987 345567777778899
Q ss_pred EecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCC
Q 045236 348 LAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEE 427 (604)
Q Consensus 348 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~~~~~~~~~~~~~ 427 (604)
+++.+.. ..|..++|||||||||||++|||+|++|+|++++||++|++||++.......+.... ...
T Consensus 245 ~st~~~~------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~n~-~g~ 311 (471)
T 1p8j_A 245 VTTDLRQ------------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNG-VGR 311 (471)
T ss_dssp EEEETTT------------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEECT-TSC
T ss_pred EEeeCCC------------CccccCCCcccccchhhhHHHHHHhhCCCCCHHHHHHHHHhcCccCCCCCCCceecC-CCc
Confidence 9997642 579999999999999999999999999999999999999999998764432222111 112
Q ss_pred CCCCCCCCcccCccccCCCCc
Q 045236 428 STPFIHGAGHVDPNRALNPGL 448 (604)
Q Consensus 428 ~~~~~~G~G~id~~~A~~~gl 448 (604)
.....||+|+||+.+|++...
T Consensus 312 ~~~~~~G~G~vda~~Av~~a~ 332 (471)
T 1p8j_A 312 KVSHSYGYGLLDAGAMVALAQ 332 (471)
T ss_dssp EEBTTTBTCBCCHHHHHHHHH
T ss_pred ccCCCCCCEEEcHhHHHHHhh
Confidence 234689999999999998543
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=323.90 Aligned_cols=188 Identities=33% Similarity=0.410 Sum_probs=165.1
Q ss_pred CCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-CCHHHHHHHHHHHHHCC-------CcEEE
Q 045236 43 DTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDILAAMDQAIADG-------VDVIS 114 (604)
Q Consensus 43 D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~aid~A~~~g-------vdVIn 114 (604)
|.+||||||||||+|+. .||||+|+|+.+|+++..+ +..+++++||+++++++ ++|||
T Consensus 66 d~~gHGT~vAgii~~~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~~~Vin 131 (279)
T 3f7m_A 66 DGHGHGTHCAGTIGSKT--------------WGVAKKVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRTVAS 131 (279)
T ss_dssp CSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEE
T ss_pred CCCCcHHHHHHHHhcCc--------------cccCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhccccccCCCCeEEE
Confidence 88999999999999873 7999999999999998765 77889999999999886 89999
Q ss_pred EcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCC-cccCCCceEeeccCCCCCccceEEEcCCCcEEEee
Q 045236 115 LSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFT-ATNIAPWILTVGASTIDREFPADAILGDGRIFGGV 193 (604)
Q Consensus 115 ~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~-~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~ 193 (604)
||||.. ....+..++.++.++|++||+||||+|..... .+...+++|+|||.+.
T Consensus 132 ~S~g~~------~~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------------------- 186 (279)
T 3f7m_A 132 MSLGGG------YSAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATDS------------------- 186 (279)
T ss_dssp ECCCEE------CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT-------------------
T ss_pred eCCCcC------ccHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecCC-------------------
Confidence 999976 34678888889999999999999999976433 3667889999998421
Q ss_pred eeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcccccc
Q 045236 194 SLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIAD 273 (604)
Q Consensus 194 ~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~ 273 (604)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 3f7m_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEecccC
Q 045236 274 SHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTG 353 (604)
Q Consensus 274 ~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~ 353 (604)
.+.++.||++||.. ||+|||++|+++++.
T Consensus 187 -------------------------------------------~~~~~~~S~~g~~~--------di~ApG~~i~s~~~~ 215 (279)
T 3f7m_A 187 -------------------------------------------NDVRSTFSNYGRVV--------DIFAPGTSITSTWIG 215 (279)
T ss_dssp -------------------------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEECGG
T ss_pred -------------------------------------------CCCCCCCCCCCCCC--------eEEECCCCeEeecCC
Confidence 45667899999865 999999999999876
Q ss_pred CCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCC
Q 045236 354 STGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDN 414 (604)
Q Consensus 354 ~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~ 414 (604)
+.|..++|||||||||||++|||+|++|+ ++++||.+|++||++...
T Consensus 216 -------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~-t~~~v~~~L~~tA~~~~~ 262 (279)
T 3f7m_A 216 -------------GRTNTISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKNVL 262 (279)
T ss_dssp -------------GCEEEECSHHHHHHHHHHHHHHHHHHTCC-CTTTHHHHHHHHSEESCC
T ss_pred -------------CCEEEeeEHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhcccccc
Confidence 57899999999999999999999999999 999999999999997643
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-38 Score=339.56 Aligned_cols=230 Identities=22% Similarity=0.244 Sum_probs=176.0
Q ss_pred CCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-CCHHHHHHHHHHHHHC------CCc
Q 045236 39 KSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDILAAMDQAIAD------GVD 111 (604)
Q Consensus 39 ~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~aid~A~~~------gvd 111 (604)
.++.|.+||||||||||+|+. .||||+|+|+.+|++++.+ +..+++++||+|+++. +++
T Consensus 66 ~~~~D~~GHGThVAGIIag~~--------------~GVAP~A~L~~vkVl~~~G~g~~s~ii~ai~~a~~~~~~~~~g~~ 131 (546)
T 2qtw_B 66 RQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPL 131 (546)
T ss_dssp --CTTTTHHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHHHHHSCCSCE
T ss_pred CCCCCCCChHHHHHHHHhccC--------------CCcCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHhhhhccCCCe
Confidence 356789999999999999874 6999999999999998766 6788999999999984 999
Q ss_pred EEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCC-CCcccCCCceEeeccCCCCCccceEEEcCCCcEE
Q 045236 112 VISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGP-FTATNIAPWILTVGASTIDREFPADAILGDGRIF 190 (604)
Q Consensus 112 VIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~ 190 (604)
|||||||.. ....+..++.++.++|++||+||||+|... ...+...+++|+|||++.+...
T Consensus 132 VINmSlGg~------~s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g~~------------ 193 (546)
T 2qtw_B 132 VVLLPLAGG------YSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP------------ 193 (546)
T ss_dssp EEEECEEEE------CCHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTSCB------------
T ss_pred EEEecCCCC------CcHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCCCc------------
Confidence 999999976 246778888889999999999999999754 2346678999999985422100
Q ss_pred EeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccc
Q 045236 191 GGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEEL 270 (604)
Q Consensus 191 ~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~ 270 (604)
T Consensus 194 -------------------------------------------------------------------------------- 193 (546)
T 2qtw_B 194 -------------------------------------------------------------------------------- 193 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEec
Q 045236 271 IADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAA 350 (604)
Q Consensus 271 ~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa 350 (604)
...-..||++|| ||||+|||++|+++
T Consensus 194 ----------------------------------------------a~~s~~fSn~G~--------~vDI~APG~~I~St 219 (546)
T 2qtw_B 194 ----------------------------------------------VTLGTLGTNFGR--------CVDLFAPGEDIIGA 219 (546)
T ss_dssp ----------------------------------------------CEETTEECCBST--------TCCEEEECSSEEEE
T ss_pred ----------------------------------------------ccccCCcCCCCC--------cceEEecCccEEee
Confidence 000013889987 45999999999999
Q ss_pred ccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCcccc-----CCC-
Q 045236 351 WTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKD-----LAS- 424 (604)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~~~~~~~-----~~~- 424 (604)
++... ..|..++|||||||||||++|||+|++|+|+|+|||++|++||.+.......+.. ..+
T Consensus 220 ~~~~~-----------~~y~~~SGTSmAAP~VAG~aALlls~~P~ltp~qVr~~L~~tAt~~~i~~~~~p~~~~~~tpN~ 288 (546)
T 2qtw_B 220 SSDCS-----------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKDVINEAWFPEDQRVLTPNL 288 (546)
T ss_dssp CTTST-----------TCEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTSEESCSCGGGSCHHHHTTSCCE
T ss_pred ccCCC-----------CcEeeeCcCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccccccCCccCccccCCCCccc
Confidence 87632 4799999999999999999999999999999999999999999875422110000 000
Q ss_pred --CCCCCCCCCCCcc--cCccccCC
Q 045236 425 --GEESTPFIHGAGH--VDPNRALN 445 (604)
Q Consensus 425 --~~~~~~~~~G~G~--id~~~A~~ 445 (604)
......+.+|+|+ .++..+..
T Consensus 289 l~~~~~~~~~~G~~l~~~~~w~a~s 313 (546)
T 2qtw_B 289 VAALPPSTHGAGWQLFCRTVWSAHS 313 (546)
T ss_dssp ECCCCCTTCC--CCCEEEEEECCCC
T ss_pred hhccCCcccccCCCcchhchhccCC
Confidence 1112345677887 66666654
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=342.94 Aligned_cols=234 Identities=19% Similarity=0.189 Sum_probs=179.3
Q ss_pred CCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCC
Q 045236 42 RDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGASG 121 (604)
Q Consensus 42 ~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~dil~aid~A~~~gvdVIn~SlG~~~ 121 (604)
.|.+||||||||||||...++. | +.||||+|+|+.+|++... +...++++||++|++.+ +|||||||...
T Consensus 95 ~d~~gHGT~vAGiiaa~~~n~~---~-----~~GvAp~a~i~~~rv~~~~-~~~~~~~~ai~~a~~~~-~Iin~S~G~~~ 164 (503)
T 2id4_A 95 LSDDYHGTRCAGEIAAKKGNNF---C-----GVGVGYNAKISGIRILSGD-ITTEDEAASLIYGLDVN-DIYSCSWGPAD 164 (503)
T ss_dssp STTTTHHHHHHHHHHCCSSSSS---S-----CCCTTTTSEEEEEECTTSC-CCHHHHHHHTTTTTTTC-SEEEECEESCC
T ss_pred CCCCChHHHHHHHHHhccCCCC---C-----cEEECCCCEEEEEEeeCCC-CChHHHHHHHHhHhhcC-CEEEeCCCcCC
Confidence 5889999999999999763221 2 3899999999999999743 67788999999999988 99999999863
Q ss_pred CCCC--CcccHHHHHHHhhh-----cCCcEEEEcCCCCCCCCCC--cc--cCCCceEeeccCCCCCccceEEEcCCCcEE
Q 045236 122 YAPQ--YDQDSIAIGSFGAA-----QHGVVVSCSAGNSGPGPFT--AT--NIAPWILTVGASTIDREFPADAILGDGRIF 190 (604)
Q Consensus 122 ~~~~--~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~G~~~~~--~~--~~ap~vitVgAst~d~~~~~~~~~~~~~~~ 190 (604)
.... .....+..++.++. .+|++||+||||+|..... .+ ..++++|+|||.+.
T Consensus 165 ~~~~~~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~~---------------- 228 (503)
T 2id4_A 165 DGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDH---------------- 228 (503)
T ss_dssp SSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECT----------------
T ss_pred CCccccCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeCC----------------
Confidence 1111 12234566666665 4799999999999965332 12 24678899987421
Q ss_pred EeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccc
Q 045236 191 GGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEEL 270 (604)
Q Consensus 191 ~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~ 270 (604)
T Consensus 229 -------------------------------------------------------------------------------- 228 (503)
T 2id4_A 229 -------------------------------------------------------------------------------- 228 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEe----CCCc
Q 045236 271 IADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIA----PGVN 346 (604)
Q Consensus 271 ~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~A----PG~~ 346 (604)
.+.++.||++||.. |++| ||..
T Consensus 229 ----------------------------------------------~~~~a~~S~~g~~~--------~~~a~~~gpG~~ 254 (503)
T 2id4_A 229 ----------------------------------------------KDLHPPYSEGCSAV--------MAVTYSSGSGEY 254 (503)
T ss_dssp ----------------------------------------------TSCCCTTCCCCTTE--------EEEEECSBTTBC
T ss_pred ----------------------------------------------CCCcCCcCCCCCcc--------eEeecCCCCCCc
Confidence 44567899999987 8887 8999
Q ss_pred EEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCC-CCccccCCCC
Q 045236 347 ILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNS-GENIKDLASG 425 (604)
Q Consensus 347 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~-~~~~~~~~~~ 425 (604)
|+++.... ..|..++|||||||||||++|||+|++|+|++.+||++|+.||+++... ...+.... .
T Consensus 255 I~st~~~~------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~~~~-~ 321 (503)
T 2id4_A 255 IHSSDING------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSA-M 321 (503)
T ss_dssp EEEECSTT------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEECS-S
T ss_pred eEeecCCC------------CceecCCCccccchhhhHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCcCCCceecC-C
Confidence 99995432 5799999999999999999999999999999999999999999987643 11111111 1
Q ss_pred CCCCCCCCCCcccCccccCCCCc
Q 045236 426 EESTPFIHGAGHVDPNRALNPGL 448 (604)
Q Consensus 426 ~~~~~~~~G~G~id~~~A~~~gl 448 (604)
.......||+|+||+.+|++...
T Consensus 322 g~~~~~~~G~G~vda~~Av~~a~ 344 (503)
T 2id4_A 322 GKKYSHRYGFGKIDAHKLIEMSK 344 (503)
T ss_dssp SSEEBTTTBTCBCCHHHHHHHHT
T ss_pred CCccCcccCCcEecHHHHHHHHh
Confidence 12234689999999999998543
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=363.16 Aligned_cols=198 Identities=25% Similarity=0.306 Sum_probs=0.0
Q ss_pred CCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-CCHHHHHHHHHHHHHC------CCc
Q 045236 39 KSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDILAAMDQAIAD------GVD 111 (604)
Q Consensus 39 ~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~aid~A~~~------gvd 111 (604)
.++.|.+||||||||||+|+. .||||+|+|+.||++++.+ +..+++++||+|++++ |++
T Consensus 218 ~~~~D~~GHGTHVAGiIAg~~--------------~GVAP~A~L~~vKVl~~~G~g~~s~ii~aI~~a~~~~~~~~~g~~ 283 (692)
T 2p4e_P 218 RQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPL 283 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCcHHHhhhHhhcCC--------------CccCCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhhhhcccCCce
Confidence 457899999999999999874 7999999999999998766 6778899999999986 899
Q ss_pred EEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCC-CcccCCCceEeeccCCCCCccceEEEcCCCcEE
Q 045236 112 VISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPF-TATNIAPWILTVGASTIDREFPADAILGDGRIF 190 (604)
Q Consensus 112 VIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~ 190 (604)
|||||||+. . ...+..++.++.++||+||+||||+|.... ..+...+++|+|||++.+...
T Consensus 284 VINmSlGg~--~----s~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~sPA~~~~vItVGA~d~~~~~------------ 345 (692)
T 2p4e_P 284 VVLLPLAGG--Y----SRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP------------ 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEecCCCC--C----cHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCcccCCCEEEEEEEcCCCCc------------
Confidence 999999976 2 345666777888999999999999997643 346778999999985432100
Q ss_pred EeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccc
Q 045236 191 GGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEEL 270 (604)
Q Consensus 191 ~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~ 270 (604)
T Consensus 346 -------------------------------------------------------------------------------- 345 (692)
T 2p4e_P 346 -------------------------------------------------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEec
Q 045236 271 IADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAA 350 (604)
Q Consensus 271 ~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa 350 (604)
...-+.||++|| ||||.|||++|+++
T Consensus 346 ----------------------------------------------a~~ss~fSn~G~--------~vDI~APG~~I~St 371 (692)
T 2p4e_P 346 ----------------------------------------------VTLGTLGTNFGR--------CVDLFAPGEDIIGA 371 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------------cccccccCCCCC--------ceeEEecCCcEEee
Confidence 000123899997 56999999999999
Q ss_pred ccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCC
Q 045236 351 WTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLD 413 (604)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~ 413 (604)
++... ..|..++|||||||||||++|||+|++|+|+|++||++|++||.+..
T Consensus 372 ~~~~~-----------~~y~~~SGTSmAAPhVAG~aALlls~~P~ltp~qVk~~L~~tA~~~~ 423 (692)
T 2p4e_P 372 SSDCS-----------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKDV 423 (692)
T ss_dssp ---------------------------------------------------------------
T ss_pred ccCCC-----------CceEeccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccccc
Confidence 97631 47899999999999999999999999999999999999999998653
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-35 Score=329.00 Aligned_cols=266 Identities=21% Similarity=0.208 Sum_probs=165.3
Q ss_pred CCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-CCHHHHHHHH-HHHHHCCCcEEEEcccCC
Q 045236 43 DTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDILAAM-DQAIADGVDVISLSVGAS 120 (604)
Q Consensus 43 D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~ai-d~A~~~gvdVIn~SlG~~ 120 (604)
|++||||||||||||.. +..| +.||||+|+|+.+|++++.+ +..++++.|+ +++..++++|||+|||..
T Consensus 111 ~~~gHGThVAGiIAa~~----n~~g-----~~GVAp~A~l~~~rvl~~~~~~~~~~~~~a~~~~~~~~~~~I~n~S~G~~ 181 (600)
T 3hjr_A 111 PDTAHGTSVSGIIAAVD----NAIG-----TKGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRDNRVFNQSYGMS 181 (600)
T ss_dssp TTCCHHHHHHHHHHCCS----SSSS-----CCCSSTTCEEEEECTTSTTCCCCHHHHHHHTTSSHHHHTCSEEEECCCCC
T ss_pred CCCChHHHHHHHHhEeC----CCCC-----cEEeCCCCEEEEEEeecCCCCccHHHHHHHhhhhhhhcCCCEEecccCcc
Confidence 56899999999999863 2222 38999999999999998765 6677777665 678889999999999976
Q ss_pred CCCCCCccc-----HHHHHHHhh--hcCCcEEEEcCCCCCCCCCCcccCCCceEeeccCCCCCccceEEEcCCCcEEEee
Q 045236 121 GYAPQYDQD-----SIAIGSFGA--AQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPADAILGDGRIFGGV 193 (604)
Q Consensus 121 ~~~~~~~~~-----~~~~a~~~a--~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~ 193 (604)
. ..+...+ .+..++..+ ..+|+++|+||||.+....... .....+ +++..
T Consensus 182 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~~~~~~-----~~~~~~-------------g~~~~---- 238 (600)
T 3hjr_A 182 V-VDPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGG-----YVLNRT-------------GNGPK---- 238 (600)
T ss_dssp C-SSCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEETT-----EEEEEE-------------SSCCC----
T ss_pred c-cCCccCCcchhhhHHHHHHHhhhccCCcEEEEeccCccccccccc-----cccccC-------------CCCCC----
Confidence 3 2222222 122222222 3689999999999764211000 000000 00000
Q ss_pred eeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcccccc
Q 045236 194 SLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIAD 273 (604)
Q Consensus 194 ~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~ 273 (604)
++ ...|..... .. .
T Consensus 239 --~~------------------~~~~~~d~~--~~--------------------------------------------~ 252 (600)
T 3hjr_A 239 --LP------------------FENSNLDPS--NS--------------------------------------------N 252 (600)
T ss_dssp --CC------------------SSBTTSSGG--GG--------------------------------------------S
T ss_pred --CC------------------cccccccCc--cc--------------------------------------------c
Confidence 00 000100000 00 0
Q ss_pred ccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcE------
Q 045236 274 SHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNI------ 347 (604)
Q Consensus 274 ~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I------ 347 (604)
. ..|.... ... .+.++.||++|+.. +++|||..+
T Consensus 253 ---~------------------------~~IsVgA----~~~-~g~~a~yS~~G~~v--------~~~apg~~~~~~~~~ 292 (600)
T 3hjr_A 253 ---F------------------------WNLVVSA----LNA-DGVRSSYSSVGSNI--------FLSATGGEYGTDTPA 292 (600)
T ss_dssp ---S------------------------SEEEEEE----ECT-TSSBCTTCCBCTTC--------CEEEECCSCSSSSCC
T ss_pred ---C------------------------cceEEee----ecC-CCCEeecccCCcce--------eeccCCCCCCCCCcc
Confidence 0 0000000 112 66788999999987 888888763
Q ss_pred --EecccCCCCCC-------------CCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccC
Q 045236 348 --LAAWTGSTGPT-------------DLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNL 412 (604)
Q Consensus 348 --~sa~~~~~~~~-------------~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~ 412 (604)
....++..... ..........|..++|||||||||||++|||+|+||+|+++|||++|++||+++
T Consensus 293 ~vt~~~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~VAGvaALll~a~P~lt~~~v~~~L~~TA~~~ 372 (600)
T 3hjr_A 293 MVTTDLPGCDMGYNRTDDPSTNRLHGNSQLDASCDYNGVMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRV 372 (600)
T ss_dssp EEEECCSSTTSSSSSTTSCCSSTTTTCTTTCTTCCEEEEECSHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHCBCC
T ss_pred eeeecCCCccccccccCCccccccccccccCCCCCceeccccccccchhHHHHHHHHHHHCCCCCHHHHHHHHHhhCccC
Confidence 22222111000 001112335789999999999999999999999999999999999999999998
Q ss_pred CCCCCcccc--------------------CCCCCCCCCCCCCCcccCccccCCCC
Q 045236 413 DNSGENIKD--------------------LASGEESTPFIHGAGHVDPNRALNPG 447 (604)
Q Consensus 413 ~~~~~~~~~--------------------~~~~~~~~~~~~G~G~id~~~A~~~g 447 (604)
+....|+.. ...+. .....||+|+||+.+|++..
T Consensus 373 d~~~~p~~~~~~~~~~~~~~~~~~~~w~~N~aG~-~~s~~yGfG~vDA~~aV~~A 426 (600)
T 3hjr_A 373 DAKHQPVMVSYTSSTGKVRDVKGLEGWERNAAGM-WFSPTYGFGLIDVNKALELA 426 (600)
T ss_dssp STTCCCEEEEEECTTSCEEEEEEECCSEECTTSC-EEBTTTBTCBCCHHHHHHHH
T ss_pred CCCCCcccccccccccccccccccCCcccccCCc-eEccccCCceecHHHHHHHh
Confidence 876654221 11122 22457999999999999844
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=9.5e-22 Score=207.15 Aligned_cols=99 Identities=18% Similarity=0.211 Sum_probs=79.6
Q ss_pred eeecCCCeEEEEEeecCCCCCHHHHHHHHHHHHH-CCCcEEEEcccCCCCCCC----CcccHHHHHHHhhhcCCcEEEEc
Q 045236 74 RGMAVKARIAVYKICWSPGCFDSDILAAMDQAIA-DGVDVISLSVGASGYAPQ----YDQDSIAIGSFGAAQHGVVVSCS 148 (604)
Q Consensus 74 ~GvAP~A~l~~~kv~~~~g~~~~dil~aid~A~~-~gvdVIn~SlG~~~~~~~----~~~~~~~~a~~~a~~~Gi~vV~A 148 (604)
..+||+++++.|++.+...+..++++++|++|++ ++++|||+|||.. ... .....+..++.+|..+||+||+|
T Consensus 90 g~~aP~a~~~~~~~~~~~~~~~~~~~~ai~~av~~~~~~ViS~S~G~~--e~~~~~~~~~~~~~~~~~~a~~~Gitvv~A 167 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWC--EADANADGTLQAEDRIFATAAAQGQTFSVS 167 (372)
T ss_dssp HHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEE--HHHHHHTTHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hhcCCCCcEEEEEeCCCCCcccHHHHHHHHHHHhcCCCCEEEeCCCCC--CCCCchHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 4578999999999987655778899999999998 8999999999987 211 12345677777788899999999
Q ss_pred CCCCCCCC-------------CCcccCCCceEeeccCCC
Q 045236 149 AGNSGPGP-------------FTATNIAPWILTVGASTI 174 (604)
Q Consensus 149 AGN~G~~~-------------~~~~~~ap~vitVgAst~ 174 (604)
+||+|... ...+..+|||++||+++.
T Consensus 168 sGd~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~ 206 (372)
T 1ga6_A 168 SGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTL 206 (372)
T ss_dssp CCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEE
T ss_pred ECCCCCccccccCccCCccCCcCCCCCCCCeEEEEeeec
Confidence 99999653 134568899999999754
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-21 Score=215.19 Aligned_cols=96 Identities=27% Similarity=0.406 Sum_probs=77.2
Q ss_pred eeeecCCCeEEEEEeecCCCCCHHHHHHHHHHHHH---CCCcEEEEcccCCCCCCCCc---ccHHHHHHHhhhcCCcEEE
Q 045236 73 ARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIA---DGVDVISLSVGASGYAPQYD---QDSIAIGSFGAAQHGVVVS 146 (604)
Q Consensus 73 ~~GvAP~A~l~~~kv~~~~g~~~~dil~aid~A~~---~gvdVIn~SlG~~~~~~~~~---~~~~~~a~~~a~~~Gi~vV 146 (604)
+.||||+|+|+.|++. ...++++.+|++|++ ++++|||+|||.. ...+. ...+..++.+|..+||+||
T Consensus 274 ~~gvAp~a~i~~~~~~----~~~~~~~~ai~~av~~~~~~~~VIS~S~G~~--e~~~~~~~~~~~~~~~~~a~~~Gi~vv 347 (552)
T 1t1e_A 274 AGALAPGAKIAVYFAP----NTDAGFLNAITTAVHDPTHKPSIVSISWGGP--EDSWAPASIAAMNRAFLDAAALGVTVL 347 (552)
T ss_dssp HHHHCTTSEEEEEECC----SSHHHHHHHHHHHHTCTTTCCSEEEECEEEE--GGGSCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hhccCCCCeEEEEEcC----CCCchHHHHHHHHHhcccCCCCEEEecccCC--cccCCHHHHHHHHHHHHHHHhCCeEEE
Confidence 5899999999999983 346789999999998 7999999999987 32221 2356666777889999999
Q ss_pred EcCCCCCCCC--------CCcccCCCceEeeccCCC
Q 045236 147 CSAGNSGPGP--------FTATNIAPWILTVGASTI 174 (604)
Q Consensus 147 ~AAGN~G~~~--------~~~~~~ap~vitVgAst~ 174 (604)
+||||+|... ..++..+|||++||+++.
T Consensus 348 ~AsGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~ 383 (552)
T 1t1e_A 348 AAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRL 383 (552)
T ss_dssp EECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEE
T ss_pred EecCCCCCCCCCCCCcccccCcccCCCEEEEecccc
Confidence 9999999643 345568899999999753
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=7.3e-10 Score=121.56 Aligned_cols=97 Identities=19% Similarity=0.185 Sum_probs=61.2
Q ss_pred eecCCCeEEEEEeecCCCCCHHHHHHHHHHHH--HCCCcEEEEcccCCCCCCCCc---ccHHHHHHHhhhcCCcEEEEcC
Q 045236 75 GMAVKARIAVYKICWSPGCFDSDILAAMDQAI--ADGVDVISLSVGASGYAPQYD---QDSIAIGSFGAAQHGVVVSCSA 149 (604)
Q Consensus 75 GvAP~A~l~~~kv~~~~g~~~~dil~aid~A~--~~gvdVIn~SlG~~~~~~~~~---~~~~~~a~~~a~~~Gi~vV~AA 149 (604)
++++...++.|..-+. ....+.++..++... .+-++|||+|||.. ..... ...+...+..+..+||.|++|+
T Consensus 263 a~~~~i~~~~~~~~g~-~~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~--e~~~~~~y~~~~~~~~~~~~~~Gitv~~AS 339 (544)
T 3edy_A 263 SAGANISTWVYSSPGR-HEGQEPFLQWLMLLSNESALPHVHTVSYGDD--EDSLSSAYIQRVNTELMKAAARGLTLLFAS 339 (544)
T ss_dssp HHSTTSEEEEECCCSC-CTTCCHHHHHHHHHTTCSSCCSEEEEECCEE--GGGSCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred ccCCCceEEEEecCCc-ccccccHHHHHHHHhccCCCCcEEEecCCCc--ccccCHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 4445555555543211 112234454444433 24688999999988 33222 2344555566778999999999
Q ss_pred CCCCCCC----------CCcccCCCceEeeccCCC
Q 045236 150 GNSGPGP----------FTATNIAPWILTVGASTI 174 (604)
Q Consensus 150 GN~G~~~----------~~~~~~ap~vitVgAst~ 174 (604)
||+|... ..++..+|||++||+++.
T Consensus 340 GD~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l 374 (544)
T 3edy_A 340 GDSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSF 374 (544)
T ss_dssp CSSTTBCEEETTEEECCCEETTTCTTSEEEEEEEE
T ss_pred CCCCccccCCCCCccccCCCcCCCCcEEEEeeeec
Confidence 9999753 245678999999999754
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.77 E-value=8.4e-08 Score=90.54 Aligned_cols=104 Identities=19% Similarity=0.111 Sum_probs=79.4
Q ss_pred eeeEEEcCC-CCCCcccCCCCCCCC-------ccccEEEEecCC-chhhhHHHHHHhcCceEEEEEcCCCCCc--cccc-
Q 045236 205 KLHLVYGGD-CGDRFCYMGRLEPSK-------VQGKIVVCDRGG-NARVEKGAAVKLAGGLGMILANTDESGE--ELIA- 272 (604)
Q Consensus 205 ~~~lv~~~~-~~~~~C~~~~~~~~~-------~~gkIvl~~~g~-~~~~~~~~~~~~aGa~g~i~~~~~~~~~--~~~~- 272 (604)
.-.+++... .....|.+..+.... .+|||+|++||. |.|.+|+.+|+++||.++|+||+...+. ..+.
T Consensus 71 ~G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~ 150 (194)
T 3icu_A 71 AGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSH 150 (194)
T ss_dssp EEEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCC
T ss_pred EEEEEecCCCCCcCCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecC
Confidence 445666542 245789887653222 479999999999 9999999999999999999999853221 1111
Q ss_pred -cccccceEEEchhhHHHHHHHHhhcCCCeEEEEeee
Q 045236 273 -DSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRG 308 (604)
Q Consensus 273 -~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 308 (604)
....||+++|+..+|+.|++++.++...+++|....
T Consensus 151 ~~~~~IPsv~Is~~~G~~L~~~L~~G~~Vtvti~vg~ 187 (194)
T 3icu_A 151 PGAVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEVGK 187 (194)
T ss_dssp TTCCSSEEEEECHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred CCCCceeEEEECHHHHHHHHHHHHCCCeEEEEEECCC
Confidence 234799999999999999999999988777776654
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0029 Score=67.42 Aligned_cols=87 Identities=20% Similarity=0.283 Sum_probs=66.2
Q ss_pred ceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcccc---ccccccceE
Q 045236 204 FKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELI---ADSHLIPAT 280 (604)
Q Consensus 204 ~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~---~~~~~ip~~ 280 (604)
...+|++.+.. .+..+...+++|||||++++.|.+.+|..+|+++||.|+|++++........ .....+|.+
T Consensus 93 v~a~lv~~~~G-----~~~D~~~~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~ 167 (421)
T 2ek8_A 93 VTAELVYVGLG-----TTADVAGKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAV 167 (421)
T ss_dssp EEEEEEECTTC-----CTTTTTTSCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEE
T ss_pred cceEEEECCCC-----ChhhcCCCCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEE
Confidence 34577775421 2223444589999999999999999999999999999999999864322211 134579999
Q ss_pred EEchhhHHHHHHHHh
Q 045236 281 MVGAIAGDKIREYIK 295 (604)
Q Consensus 281 ~i~~~~g~~l~~~~~ 295 (604)
.++.++++.|+.++.
T Consensus 168 ~Is~~~a~~L~~~l~ 182 (421)
T 2ek8_A 168 GITKQEGDALAANLR 182 (421)
T ss_dssp EECHHHHHHHHHHHH
T ss_pred EeCHHHHHHHHHHhh
Confidence 999999999999984
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.014 Score=62.52 Aligned_cols=103 Identities=15% Similarity=0.155 Sum_probs=71.3
Q ss_pred CCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCch---------hhhH----HHHHHhcCceEEEEEcCCCCCc
Q 045236 202 PDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNA---------RVEK----GAAVKLAGGLGMILANTDESGE 268 (604)
Q Consensus 202 ~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~---------~~~~----~~~~~~aGa~g~i~~~~~~~~~ 268 (604)
...+.+||+.... ..|.. ....+++|||||+.++.|. +..| ..+|.++||+|+|++++.....
T Consensus 104 ~~vta~lV~v~~~--~~~~~--~~~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~ 179 (444)
T 3iib_A 104 QGLSATIVRFDTL--QDLQN--AEAGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHD 179 (444)
T ss_dssp TCEEEEEEEESSH--HHHHT--SCTTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCS
T ss_pred CCeEEEEEecCCH--HHHhh--ccccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCccc
Confidence 3457788886532 12322 2356899999999998773 3344 4579999999999998643221
Q ss_pred -------cccc-cccccceEEEchhhHHHHHHHHhhcCCCeEEEEeee
Q 045236 269 -------ELIA-DSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRG 308 (604)
Q Consensus 269 -------~~~~-~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 308 (604)
.... ....+|++.|+.+++..|+..++.+....+++....
T Consensus 180 ~~~~tg~~~~~~~~~~IP~~~Is~~da~~L~~~l~~g~~~~v~l~~~~ 227 (444)
T 3iib_A 180 RMAHTGMMRYEEGVTAIPAAAISNPDADLINAMLKRDKEVVISLELGS 227 (444)
T ss_dssp SCCCCCBCCCCTTSCCCCEEEECHHHHHHHHHHHTTTCCCEEEEEEEE
T ss_pred ccccCCccccCCCCCCCCeEEecHHHHHHHHHHHhCCCCeEEEEEEee
Confidence 0111 235799999999999999999988766666655543
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0076 Score=67.30 Aligned_cols=89 Identities=18% Similarity=0.151 Sum_probs=63.4
Q ss_pred ceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcc--------------
Q 045236 204 FKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEE-------------- 269 (604)
Q Consensus 204 ~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~-------------- 269 (604)
.+.+|||.+-... ++...+. .+++|||||+++|.|.+.+|..+|+++||.|+|++++......
T Consensus 108 v~g~lV~vg~G~~--~D~~~l~-vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~ 184 (640)
T 3kas_A 108 VTGKLVHANFGTK--KDFEDLY-TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLG 184 (640)
T ss_dssp EEECEEECTTCCH--HHHHTCS-SCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSS
T ss_pred eEEEEEEecCCCh--hhHHHhh-cccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccccC
Confidence 3567888653211 1111122 5899999999999999999999999999999999997532100
Q ss_pred ----cc----------------ccccccceEEEchhhHHHHHHHHh
Q 045236 270 ----LI----------------ADSHLIPATMVGAIAGDKIREYIK 295 (604)
Q Consensus 270 ----~~----------------~~~~~ip~~~i~~~~g~~l~~~~~ 295 (604)
.. .....||+..|+..++..|+..+.
T Consensus 185 ~Gdp~tpg~ps~~~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 185 TGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp SSCSCCCSSCC---CCCCCCSSCCCCSSCEEECCHHHHHHHHTTEE
T ss_pred CCCCCCCCcccccccccccccccCCCCCCEEecCHHHHHHHHHHcc
Confidence 00 012368999999999999988654
|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.034 Score=48.20 Aligned_cols=74 Identities=18% Similarity=0.276 Sum_probs=56.3
Q ss_pred CceEEEEEEEeccCCCCceEEEEEEECCCCcEEEEEcceEEEcccceeEEEEEEEEeeccCCCCCCCceEEEEEEE-cCC
Q 045236 507 NDVVKYKRVVKNVGSSVDAVYEVKVNAPPNVAVNVWPSKLAFSAEKKALAYEITFSSVGLDGLGVSPQQSGSIEWS-DGV 585 (604)
Q Consensus 507 ~~~~t~~rtv~n~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~G~l~~~-~~~ 585 (604)
..+.+.+.+++|+|+. +..|+..... -.++.|....+ ++|+++.++|+|.+... +.+.+.|... +++
T Consensus 40 ~~~~~~~~~l~N~g~~-~~~f~~~~~~----~F~i~P~~g~L-~pg~~~~i~V~F~P~~~------g~~~~~l~v~~~~g 107 (122)
T 2ys4_A 40 KYSTQKILLVRNIGNK-NAVFHIKTCR----PFSIEPAIGTL-NVGESMQLEVEFEPQSV------GDHSGRLIVCYDTG 107 (122)
T ss_dssp SSCEEEEEEEECCSSS-CEEEEEECCT----TEEEESSEEEE-CTTCEEEEEEEECCSSS------BCCCCBCEEEESSS
T ss_pred CCeEEEEEEEEECCCC-CEEEEEecCC----CeEEECCcCEE-CCCCEEEEEEEEEcCCC------ccEEEEEEEEECCC
Confidence 3567888999999998 8888766533 36778999999 68999999999999865 4567777766 555
Q ss_pred eEEEEEE
Q 045236 586 HLVRSPI 592 (604)
Q Consensus 586 ~~v~~P~ 592 (604)
..+.+++
T Consensus 108 ~~~~v~L 114 (122)
T 2ys4_A 108 EKVFVSL 114 (122)
T ss_dssp CEECCEE
T ss_pred CEEEEEE
Confidence 5555544
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=95.73 E-value=0.013 Score=65.99 Aligned_cols=88 Identities=24% Similarity=0.250 Sum_probs=64.5
Q ss_pred ceeeEEEcCCCCCCcccCCCCC------CCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCC----C------
Q 045236 204 FKLHLVYGGDCGDRFCYMGRLE------PSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDES----G------ 267 (604)
Q Consensus 204 ~~~~lv~~~~~~~~~C~~~~~~------~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~----~------ 267 (604)
.+-+|||.+.. |. ..+. ..+++|||||+++|.|.+.+|+.+|+++||.|+|+|++..+ +
T Consensus 127 v~g~lV~v~~G----~~-~Df~~L~~~~~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~ 201 (707)
T 3fed_A 127 PEGDLVYVNYA----RT-EDFFKLEREMGINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPK 201 (707)
T ss_dssp CEECEEECTTC----CH-HHHHHHHHTSCCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTT
T ss_pred eEEEEEEecCC----ch-hhHHHHHhccCCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccCCC
Confidence 45688886432 21 1121 45799999999999999999999999999999999986210 0
Q ss_pred ---------------------ccccc-----------------cccccceEEEchhhHHHHHHHHhh
Q 045236 268 ---------------------EELIA-----------------DSHLIPATMVGAIAGDKIREYIKL 296 (604)
Q Consensus 268 ---------------------~~~~~-----------------~~~~ip~~~i~~~~g~~l~~~~~~ 296 (604)
..... ....||++.|+..++..|+..++.
T Consensus 202 ~~~~p~~~vqrGsv~~~~~~GDp~TPG~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 202 GWNLPGTAAQRGNVLNLNGAGDPLTPGYPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp SSBCCTTCCCCCCCCCCTTCCSTTCTTSCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred CccCCCccccccceecccCCCCCCCCCCcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 00000 124699999999999999987754
|
| >3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.82 E-value=1.6 Score=38.58 Aligned_cols=88 Identities=9% Similarity=-0.028 Sum_probs=62.0
Q ss_pred ceEEEEEEEeccCCCCceEEEEEEECC----CCcEEEEEcceEEEcccceeEEEEEEEEeeccC--CC-CCCCceEEEEE
Q 045236 508 DVVKYKRVVKNVGSSVDAVYEVKVNAP----PNVAVNVWPSKLAFSAEKKALAYEITFSSVGLD--GL-GVSPQQSGSIE 580 (604)
Q Consensus 508 ~~~t~~rtv~n~~~~~~~ty~~~~~~~----~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~--~~-~~~~~~~G~l~ 580 (604)
...+.+.+++|.|.. +.+|++..... ..--+++.|..-++ .+|++.++.|++...... .+ .....++--|+
T Consensus 43 ~~~~~~l~I~Ntg~v-pa~F~f~~~~~~~~~~~~wl~v~P~~G~L-~Pge~~~I~v~~~v~~~~~~~ln~g~~~l~diLv 120 (140)
T 3qbt_B 43 QLQKEKFQISNNGQV-PCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVYVSKDSVTILNSGEDKIEDILV 120 (140)
T ss_dssp CCEEEEEEEEECSSS-CEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEECBCHHHHHHHHHSSSCSCEEEE
T ss_pred eeeeeEEEEEcCCcc-ceEEEEecCCCchhhhhHhhhcCCccccc-CCCCeeEEEEEEEEccCcccccccchhhhheeEE
Confidence 456778899999998 99999874321 11247788999999 699999999999864320 00 01234566677
Q ss_pred EE-cCCeEEEEEEEEEec
Q 045236 581 WS-DGVHLVRSPIAVRWI 597 (604)
Q Consensus 581 ~~-~~~~~v~~P~~~~~~ 597 (604)
+. .++....+|+-..+.
T Consensus 121 L~Ve~G~d~fI~v~g~~~ 138 (140)
T 3qbt_B 121 LHLDRGKDYFLTISGNYL 138 (140)
T ss_dssp EEETTSCEEEEEEEEEEC
T ss_pred EEeecCCcEEEEEecccc
Confidence 76 788888999887653
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=85.01 E-value=3.1 Score=44.04 Aligned_cols=29 Identities=31% Similarity=0.335 Sum_probs=25.7
Q ss_pred CCccccccCCCCCCCCCCccCCceEeCCCcEEecccC
Q 045236 317 APKVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTG 353 (604)
Q Consensus 317 ~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~ 353 (604)
.+.++.||++||.. ||+|||++|+++++.
T Consensus 183 ~~~~~~~S~~g~~v--------dv~ApG~~i~s~~~~ 211 (441)
T 1y9z_A 183 NLDHAAFSQYTDQV--------EISGPGEAILSTVTV 211 (441)
T ss_dssp TCCBCTTSCCCTTE--------EEEEECSSEEEECST
T ss_pred CCCCCccccCCCce--------EEEeccCCeeccccC
Confidence 66789999999865 999999999999874
|
| >2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.97 E-value=2.5 Score=35.19 Aligned_cols=67 Identities=19% Similarity=0.208 Sum_probs=48.9
Q ss_pred ceEEEEEEEeccCCCCceEEEEEEEC-CCCcEEEEEcceEEEcccceeEEEEEEEEeeccCCCCCCCceEEEEEEE
Q 045236 508 DVVKYKRVVKNVGSSVDAVYEVKVNA-PPNVAVNVWPSKLAFSAEKKALAYEITFSSVGLDGLGVSPQQSGSIEWS 582 (604)
Q Consensus 508 ~~~t~~rtv~n~~~~~~~ty~~~~~~-~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~G~l~~~ 582 (604)
...+.+.+++|.|+. +..|+..... +.+...++.|..-.+ .+|++++++|+|.+... +.+.=.|++.
T Consensus 26 ~~~~~~~~l~N~g~~-p~~~~~~~~~~~~~~~f~v~p~~g~i-~pg~~~~i~V~f~~~~~------g~f~~~i~v~ 93 (112)
T 2e6j_A 26 SAHCYEAILYNKGSI-DALFNMTPPTSALGACFVFSPKEGII-EPSGVQAIQISFSSIIL------GNFEEEFLVN 93 (112)
T ss_dssp CCEEEEEEEEECCSS-CEEEEECCCSSHHHHHCEEESSEEEE-CTTBCCEEEEEECCCCC------EEEEEEECEE
T ss_pred CEEEEEEEEEECCcc-eEEEEEecCCccccCcEEEECCcCEE-CCCCEEEEEEEEECCCc------ceEEEEEEEE
Confidence 457778899999998 9999883211 112347778999888 68999999999998653 3344556665
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 604 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 4e-40 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 2e-16 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 1e-13 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 5e-13 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 2e-12 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 2e-12 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 2e-12 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 3e-12 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 0.002 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 7e-11 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 5e-08 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 6e-07 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 3e-05 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 3e-06 | |
| d1ga6a_ | 369 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse | 5e-04 | |
| d1t1ga_ | 357 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bac | 0.003 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 149 bits (377), Expect = 4e-40
Identities = 64/418 (15%), Positives = 124/418 (29%), Gaps = 49/418 (11%)
Query: 33 DETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG 92
T P + HGTH A T A + G+ ++ +
Sbjct: 51 SGTGNWYQPGNNNAHGTHVAGTIAAIANN---------EGVVGVMPNQNANIHIVKVFNE 101
Query: 93 CFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNS 152
+ + + V S + +++ +AGN+
Sbjct: 102 AGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERNALNTHYNNGVLLI-AAAGNA 160
Query: 153 GPGPFTATNIAPWILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGG 212
G ++ +++V A + + A + D G ++ + L
Sbjct: 161 GDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEGRLADIT 220
Query: 213 DCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEELIA 272
G + +V +R + A A G + A +G
Sbjct: 221 IGGQSYFS----------NGVVPHNRLTPSGTSYAPAPINASATGAL-AECTVNGTSFSC 269
Query: 273 DSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLT 332
+ +V + S YP + + +S P
Sbjct: 270 GNMANKICLVERVGNQG-------SSYPEINSTKA---CKTAGAKGIIVYSNSALPGLQN 319
Query: 333 AEIL--KPDVIAPGVNILAAWT----GSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLA 386
++ D+ P V++ A G + + D+ +GTSM+ PHVSG+A
Sbjct: 320 PFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVA 379
Query: 387 ALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRAL 444
L+ +P+ S + +++AL TA +L +G G G ++ A
Sbjct: 380 TLVWSYHPECSASQVRAALNATADDLSVAG------------RDNQTGYGMINAVAAK 425
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 80.5 bits (197), Expect = 2e-16
Identities = 40/154 (25%), Positives = 60/154 (38%), Gaps = 21/154 (13%)
Query: 313 PSPPAPKVAAFSSRGPNSLTAEI----LKPDVIAPGVNILAAWTGS-----TGPTDLEID 363
P +VAA G A V APGV IL+ G G +
Sbjct: 309 GYPGVIQVAALDYYGGTFRVAGFSSRSDGVSVGAPGVTILSTVPGEDSIGYEGHNENVPA 368
Query: 364 PRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLA 423
++ GTSM+ PHV+G+ A+L + +P+ P I+ L TA++ + +G +
Sbjct: 369 TNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGWD----- 423
Query: 424 SGEESTPFIHGAGHVDPNRALNPGLVYDIDVSEY 457
G G V + AL L V E+
Sbjct: 424 -------HDTGYGLVKLDAALQGPLPTQGGVEEF 450
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 70.3 bits (170), Expect = 1e-13
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 18/115 (15%)
Query: 336 LKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPD 395
+KPDV+APG IL+A + + + + + GTSM+ P V+G A LR+ +
Sbjct: 216 IKPDVMAPGTFILSARSSLAPDSSFWAN-HDSKYAYMGGTSMATPIVAGNVAQLREHFVK 274
Query: 396 -----WSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALN 445
P+ +K+AL+ A ++ N G G V +++LN
Sbjct: 275 NRGITPKPSLLKAALIAGAADIGLGYPN------------GNQGWGRVTLDKSLN 317
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 68.0 bits (164), Expect = 5e-13
Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 18/103 (17%)
Query: 337 KPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDW 396
++ APG ++ + W +N ISGTSM+ PHVSGLAA + P
Sbjct: 224 DIEISAPGSSVYSTWYN-------------GGYNTISGTSMATPHVSGLAAKIWAENPSL 270
Query: 397 SPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVD 439
S ++S L A ++D G + G G
Sbjct: 271 SNTQLRSNLQERAKSVDIKGGY-----GAAIGDDYASGFGFAR 308
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 65.7 bits (159), Expect = 2e-12
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 28/108 (25%)
Query: 337 KPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDW 396
+ +V+APG + + + +T + ++GTSM+ PHV+G AAL+ +P+
Sbjct: 194 ELEVMAPGAGVYSTYPTNT-------------YATLNGTSMASPHVAGAAALILSKHPNL 240
Query: 397 SPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRAL 444
S + +++ L +TA L +S F +G G ++ A
Sbjct: 241 SASQVRNRLSSTATYLGSS---------------FYYGKGLINVEAAA 273
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 65.7 bits (159), Expect = 2e-12
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 36/126 (28%)
Query: 319 KVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMS 378
+ A+FSS GP + DV+APGV+I + G+ + +GTSM+
Sbjct: 185 QRASFSSVGP--------ELDVMAPGVSIQSTLPGNK-------------YGAYNGTSMA 223
Query: 379 CPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHV 438
PHV+G AAL+ +P+W+ ++S+L T L + F +G G +
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD---------------SFYYGKGLI 268
Query: 439 DPNRAL 444
+ A
Sbjct: 269 NVQAAA 274
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 66.3 bits (160), Expect = 2e-12
Identities = 14/73 (19%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 373 SGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFI 432
+GTS S P +G+ AL +A + + ++ ++ T+ + ++ G + +
Sbjct: 257 TGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHS- 315
Query: 433 HGAGHVDPNRALN 445
+G G +D +
Sbjct: 316 YGYGLLDAGAMVA 328
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 65.0 bits (157), Expect = 3e-12
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 36/126 (28%)
Query: 319 KVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMS 378
A+FS G D++APGVN+ + + GST + ++GTSM+
Sbjct: 179 NRASFSQYGAG--------LDIVAPGVNVQSTYPGST-------------YASLNGTSMA 217
Query: 379 CPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHV 438
PHV+G AAL+++ P WS I++ L TA +L ++ ++G+G V
Sbjct: 218 TPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTN---------------LYGSGLV 262
Query: 439 DPNRAL 444
+ A
Sbjct: 263 NAEAAT 268
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 38.0 bits (87), Expect = 0.002
Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 6/109 (5%)
Query: 80 ARIAVYKICWSPG-CFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGA 138
A + K+ + G S I ++ A +G+ V +LS+G+ + +Q +
Sbjct: 86 AELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVNSA----- 140
Query: 139 AQHGVVVSCSAGNSGPGPFTATNIAPWILTVGASTIDREFPADAILGDG 187
GV+V ++GNSG G + + VGA+ + + + G G
Sbjct: 141 TSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAG 189
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.7 bits (148), Expect = 7e-11
Identities = 15/77 (19%), Positives = 36/77 (46%)
Query: 369 FNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEES 428
N GTS + P +G+ LL +A P+ + ++ + +A L+ + + ++ +
Sbjct: 257 SNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKK 316
Query: 429 TPFIHGAGHVDPNRALN 445
+G G +D ++ +
Sbjct: 317 YSHRYGFGKIDAHKLIE 333
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 52.4 bits (124), Expect = 5e-08
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 368 DFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSG 416
ISGTSM+ PHV+GLAA L + +A + + TA D S
Sbjct: 216 STRSISGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTANKGDLSN 263
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 49.2 bits (116), Expect = 6e-07
Identities = 48/257 (18%), Positives = 83/257 (32%), Gaps = 37/257 (14%)
Query: 202 PDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAA--VKLAGGLGMI 259
PD ++ G D D L + NA G A ++ +
Sbjct: 47 PDLDGKVIKGYDFVDNDYDPMDLNNHGTHVAGIAAAETNNATGIAGMAPNTRI-----LA 101
Query: 260 LANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPK 319
+ D +G ++D I ++ A + L T + + + +
Sbjct: 102 VRALDRNGSGTLSD---IADAIIYAADSGAEVINLSLGCDCHTTTLENAVNYAWNKGSVV 158
Query: 320 VAAFSSRGPNSLTAEILKPDVI---APGVNILAAWTGSTGPTDLEIDPR--------RVD 368
VAA + G ++ +VI A A + G + P
Sbjct: 159 VAAAGNNGSSTTFEPASYENVIAVGAVDQYDRLASFSNYGTWVDVVAPGVDIVSTITGNR 218
Query: 369 FNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEES 428
+ +SGTSM+ PHV+GLAALL + I+ A+ TA + +G
Sbjct: 219 YAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISGTGT----------- 265
Query: 429 TPFIHGAGHVDPNRALN 445
G ++ A+
Sbjct: 266 ---YFKYGRINSYNAVT 279
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 43.8 bits (102), Expect = 3e-05
Identities = 38/142 (26%), Positives = 51/142 (35%), Gaps = 14/142 (9%)
Query: 33 DETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG 92
D + P D HGTH A AA + GMA RI + G
Sbjct: 58 DFVDNDYDPMDLNNHGTHVAGIAAAETNNA--------TGIAGMAPNTRILAVRALDRNG 109
Query: 93 -CFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGN 151
SDI A+ A G +VI+LS+G + + A G VV +AGN
Sbjct: 110 SGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLEN-----AVNYAWNKGSVVVAAAGN 164
Query: 152 SGPGPFTATNIAPWILTVGAST 173
+G ++ VGA
Sbjct: 165 NGSSTTFEPASYENVIAVGAVD 186
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 47.0 bits (110), Expect = 3e-06
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 16/77 (20%)
Query: 368 DFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEE 427
+ +SGTSM+ PHV+G+A LL S + I++A+ TA + +G
Sbjct: 217 TYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKISGTGT---------- 264
Query: 428 STPFIHGAGHVDPNRAL 444
G V+ +A+
Sbjct: 265 ----YWAKGRVNAYKAV 277
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Score = 40.4 bits (93), Expect = 5e-04
Identities = 22/117 (18%), Positives = 36/117 (30%), Gaps = 13/117 (11%)
Query: 43 DTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGC-FDSDILAA 101
+ L S + G A A + ++ + A
Sbjct: 66 SNGDYSDDQQGQGEWDLDSQS---------IVGSAGGAVQQLLFYMADQSASGNTGLTQA 116
Query: 102 MDQAIAD-GVDVISLSVGASGYAPQYDQDSIAIGSF--GAAQHGVVVSCSAGNSGPG 155
+QA++D VI++S+G D A AA G S S+G+ G
Sbjct: 117 FNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVY 173
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Score = 38.2 bits (87), Expect = 0.003
Identities = 24/116 (20%), Positives = 38/116 (32%), Gaps = 6/116 (5%)
Query: 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDIL 99
+G G + A +A A+IAVY + F + I
Sbjct: 57 VSVSVDGATNQPTGDPNGPDGEVELDIEV----AGALAPGAKIAVYFAPNTDAGFLNAIT 112
Query: 100 AAMDQAIADGVDVISLSVGAS-GYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGP 154
A+ ++S+S G ++ AA GV V +AG+SG
Sbjct: 113 TAVHDP-THKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGS 167
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 604 | |||
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 99.97 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 99.96 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.89 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.86 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 96.91 | |
| d3bi1a2 | 233 | Glutamate carboxypeptidase II {Human (Homo sapiens | 96.29 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 95.57 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=1.9e-44 Score=388.78 Aligned_cols=343 Identities=22% Similarity=0.298 Sum_probs=223.6
Q ss_pred CCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecC--CCeEEEEEee
Q 045236 11 NKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAV--KARIAVYKIC 88 (604)
Q Consensus 11 n~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP--~A~l~~~kv~ 88 (604)
.+|++..++|... .+..+|.|++||||||||||||+... ..+.|||| +++|+.+|++
T Consensus 41 ~~~~~~~~~~~~~------------~~~~~~~d~~gHGThvAgiiag~~~~---------~g~~GvAp~~~~~l~~~~~~ 99 (435)
T d1v6ca_ 41 NANNVTGTNNSGT------------GNWYQPGNNNAHGTHVAGTIAAIANN---------EGVVGVMPNQNANIHIVKVF 99 (435)
T ss_dssp TTSEEEECCCTTS------------CCTTCCCSSCCHHHHHHHHHHCCCSS---------SBCCCSSCSSCSEEEEEECE
T ss_pred ccCeeeeeccCCC------------CCCCCCCCCCCcHHHHHHHHhccCCC---------CceEEEecccCceeeeeecc
Confidence 5677777666543 23456889999999999999998622 22489999 8999999998
Q ss_pred cCCC-CCHHHHHHHHHHHHH-CCCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCcccCCCce
Q 045236 89 WSPG-CFDSDILAAMDQAIA-DGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWI 166 (604)
Q Consensus 89 ~~~g-~~~~dil~aid~A~~-~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~v 166 (604)
.... +...++++||+++++ .+++|||+|||... ....+..++.++.++|+++|+||||+|+...+.++.++++
T Consensus 100 ~~~~~~~~~~~~~a~~~a~~~~~~~vin~S~g~~~-----~~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~v 174 (435)
T d1v6ca_ 100 NEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSG-----STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSV 174 (435)
T ss_dssp ETTEECCSSCHHHHHHHHHHTTCCSEEEECCCBSC-----CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTE
T ss_pred cccccchhhhhhhHHHHHhhcccceEEecccCCCC-----CCHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCc
Confidence 7754 566779999999996 59999999999882 2355667777888999999999999999888888899999
Q ss_pred EeeccCCCCCccceEEEcCCCcEE--EeeeeccCCCCCCc------------------eeeEEEcCCCC-----------
Q 045236 167 LTVGASTIDREFPADAILGDGRIF--GGVSLYAGESLPDF------------------KLHLVYGGDCG----------- 215 (604)
Q Consensus 167 itVgAst~d~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~------------------~~~lv~~~~~~----------- 215 (604)
|+||+++.+.........+....+ .|..++........ ....+......
T Consensus 175 i~Vga~~~~~~~~~~s~~g~~vdv~apG~~i~st~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (435)
T d1v6ca_ 175 MSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASAT 254 (435)
T ss_dssp EEEEEECTTCCBCTTSCCCSSEEEEEECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEE
T ss_pred eEEEEecCCCCcccccCCCCceEEeecccceeeeeecCCCcccccccCCceeeccccccccccccccccccccceecccc
Confidence 999998766543222112211111 01111100000000 00000000000
Q ss_pred --CCcc--cCCCCCCCCccccEEEEecCCc-----hhhhHHHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhh
Q 045236 216 --DRFC--YMGRLEPSKVQGKIVVCDRGGN-----ARVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIA 286 (604)
Q Consensus 216 --~~~C--~~~~~~~~~~~gkIvl~~~g~~-----~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~ 286 (604)
...| ....+...++.+++.++.+... ............+..+++.+.+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 311 (435)
T d1v6ca_ 255 GALAECTVNGTSFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSN----------------------- 311 (435)
T ss_dssp EEEEEEEEETTEEECCCCTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECC-----------------------
T ss_pred ceEEEEecCCceeeccccccccceeeccCCccccceeeeeceeecccCCcceEEecc-----------------------
Confidence 0001 1112223445566666655322 3333444445555554444332
Q ss_pred HHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCC--CCccCCceEeCCCcEEecccCCCCC----CCC
Q 045236 287 GDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLT--AEILKPDVIAPGVNILAAWTGSTGP----TDL 360 (604)
Q Consensus 287 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~--~~~lKPDI~APG~~I~sa~~~~~~~----~~~ 360 (604)
+.+|.... ....||||.+||..|.+++...... ...
T Consensus 312 --------------------------------------~~~~~~~~~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~ 353 (435)
T d1v6ca_ 312 --------------------------------------SALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTT 353 (435)
T ss_dssp --------------------------------------SSSCSCCCCEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEE
T ss_pred --------------------------------------CCCCCcCCccccccCCceEEEEEEeccccccccccccCCcce
Confidence 22222211 2467899999999887664321100 000
Q ss_pred CCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCCCCcccCc
Q 045236 361 EIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDP 440 (604)
Q Consensus 361 ~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~ 440 (604)
........|..|||||||||||||++|||||+||+|+++|||++||+||+++. .++++++||+|+||+
T Consensus 354 ~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~s~~~vk~~L~~TA~~~~------------~~~~~~~~G~G~vn~ 421 (435)
T d1v6ca_ 354 VSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLS------------VAGRDNQTGYGMINA 421 (435)
T ss_dssp EEEEEEESEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCS------------SSSCBTTTBTCBCCH
T ss_pred ecCCCCCCeeEEccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcccC------------CCCCCCCcccceecH
Confidence 01112257999999999999999999999999999999999999999998773 345678999999999
Q ss_pred cccCCCCceeccCchhhhhcccc
Q 045236 441 NRALNPGLVYDIDVSEYVAFLCS 463 (604)
Q Consensus 441 ~~A~~~glv~d~~~~d~~~~~c~ 463 (604)
.+|+ +||...|+
T Consensus 422 ~~A~-----------~~l~~~~~ 433 (435)
T d1v6ca_ 422 VAAK-----------AYLDESCT 433 (435)
T ss_dssp HHHH-----------HHHHHCTT
T ss_pred HHHH-----------HHHHhcCC
Confidence 9996 47777765
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=2.3e-42 Score=389.96 Aligned_cols=257 Identities=27% Similarity=0.277 Sum_probs=201.0
Q ss_pred CCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecC
Q 045236 11 NKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWS 90 (604)
Q Consensus 11 n~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~ 90 (604)
.+|++..++|..+.. .....++.|.+||||||||||||+... ..+.||||+|+|+.+|++++
T Consensus 173 ~~~~~~~~~~~~~~~---------~~~~~~~~d~~gHGT~VAGiiaa~~~~---------~g~~GvAp~a~l~~~rv~~~ 234 (671)
T d1r6va_ 173 EGQVIAGYRPAFDEE---------LPAGTDSSYGGSAGTHVAGTIAAKKDG---------KGIVGVAPGAKIMPIVIFDD 234 (671)
T ss_dssp TTTBCCEEEGGGTEE---------ECTTCBCCTTCSHHHHHHHHHHCCCSS---------SSCCCSCTTSEEEEEESBCC
T ss_pred cCCcccCccccccCC---------CCCCCcCcccCCCCccccceeeeeccc---------cceeeecCcceEEEEEeccc
Confidence 456777777654321 122345678899999999999997521 12489999999999999864
Q ss_pred ------CC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCC-CCcccC
Q 045236 91 ------PG-CFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGP-FTATNI 162 (604)
Q Consensus 91 ------~g-~~~~dil~aid~A~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ 162 (604)
.+ ...+++++||+||+++|++|||||||+.. ....+..++..+.++|+++|+||||++... ...+..
T Consensus 235 ~~~~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~g~~~-----~~~~~~~ai~~a~~~gv~vV~aAGN~~~~~~~~~Pa~ 309 (671)
T d1r6va_ 235 PALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG-----YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAG 309 (671)
T ss_dssp HHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC-----CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTT
T ss_pred ccccCCCCcccHHHHHHHHHHHHhCCCcEEeccccccc-----CChHHHHHHHHHHhccCcEEEEEecCCCCccccCCcc
Confidence 23 55677999999999999999999999872 346677788889999999999999998653 456678
Q ss_pred CCceEeeccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCch
Q 045236 163 APWILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNA 242 (604)
Q Consensus 163 ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~ 242 (604)
.|++|+|||.+.+.
T Consensus 310 ~~~vi~Vga~~~~~------------------------------------------------------------------ 323 (671)
T d1r6va_ 310 YPGVIQVAALDYYG------------------------------------------------------------------ 323 (671)
T ss_dssp STTCEEEEEEEEET------------------------------------------------------------------
T ss_pred CCceEEEEEecCCC------------------------------------------------------------------
Confidence 89999999843110
Q ss_pred hhhHHHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCcccc
Q 045236 243 RVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAA 322 (604)
Q Consensus 243 ~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~ 322 (604)
. ...++.
T Consensus 324 ------------------------------------------------------------------------~-~~~~a~ 330 (671)
T d1r6va_ 324 ------------------------------------------------------------------------G-TFRVAG 330 (671)
T ss_dssp ------------------------------------------------------------------------T-EEEECS
T ss_pred ------------------------------------------------------------------------C-cceeee
Confidence 0 235688
Q ss_pred ccCCCCCCCCCCccCCceEeCCCcEEecccCCCCCCC-----CCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCC
Q 045236 323 FSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTD-----LEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWS 397 (604)
Q Consensus 323 fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~-----~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~s 397 (604)
||+|||.+ ||+|||++|+++++....... .......+.|..++|||||||||||++|||+|++|+|+
T Consensus 331 fS~~g~~~--------dv~APG~~i~st~~~~~~~~~~~~~~~~~~~~~~~y~~~sGTS~AaP~VaG~aALl~~~~p~lt 402 (671)
T d1r6va_ 331 FSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAK 402 (671)
T ss_dssp SSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred ccCCCCCc--------eEEecCCCeEeecCCCCccccccccccccccCCCeeeeecCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 99999976 999999999999875432111 11122347899999999999999999999999999999
Q ss_pred HHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCCCCcccCccccCCCCce
Q 045236 398 PAAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALNPGLV 449 (604)
Q Consensus 398 p~~Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A~~~glv 449 (604)
+.|||++|++||+++... ..+..||||+||+.+|++..+.
T Consensus 403 ~~~v~~~L~~tA~~~~~~------------g~~~~~G~G~vna~~Av~~~~~ 442 (671)
T d1r6va_ 403 PWQIRKLLENTAFDFNGN------------GWDHDTGYGLVKLDAALQGPLP 442 (671)
T ss_dssp HHHHHHHHHHHCBCSSSS------------SCBTTTBTCBCCHHHHHHCCCC
T ss_pred HHHHHHHHHhhCccCCCC------------CCCCCcccChhCHHHHhhCcCC
Confidence 999999999999987532 2346899999999999986543
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=4.8e-40 Score=333.51 Aligned_cols=229 Identities=32% Similarity=0.416 Sum_probs=185.2
Q ss_pred CCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecC
Q 045236 11 NKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWS 90 (604)
Q Consensus 11 n~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~ 90 (604)
++|++..++|... ...|.|.+||||||||+|+|.... .+.+.||||+|+|+.+|+++.
T Consensus 50 ~~~~~~~~~~~~~--------------~~~~~d~~~HGT~vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~ 107 (280)
T d1dbia_ 50 DGKVIKGYDFVDN--------------DYDPMDLNNHGTHVAGIAAAETNN--------ATGIAGMAPNTRILAVRALDR 107 (280)
T ss_dssp TTTEEEEEETTTT--------------BSCCCCSSSHHHHHHHHHHCCCSS--------SSSCCCSSSSCEEEEEECCCT
T ss_pred cCCeeecccccCC--------------CCccccccccccceeEeeeccccC--------CCceeEEeccCEEEEEEEeCC
Confidence 5678888887653 234778999999999999998632 233589999999999999987
Q ss_pred CC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCcccCCCceEee
Q 045236 91 PG-CFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTV 169 (604)
Q Consensus 91 ~g-~~~~dil~aid~A~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitV 169 (604)
.+ +...++++||++++++|++|||+|||... ..+....+...+.++|+++|+||||+|......+...+++|+|
T Consensus 108 ~~~~~~~~~~~ai~~a~~~g~~iin~S~g~~~-----~~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~V 182 (280)
T d1dbia_ 108 NGSGTLSDIADAIIYAADSGAEVINLSLGCDC-----HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAV 182 (280)
T ss_dssp TSCCCHHHHHHHHHHHHHTTCSEEEECCSSCC-----CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCcEeeccccccc-----cchhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEE
Confidence 65 77889999999999999999999999872 2344556667888999999999999998777777788999999
Q ss_pred ccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHH
Q 045236 170 GASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAA 249 (604)
Q Consensus 170 gAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~ 249 (604)
||.+.
T Consensus 183 ga~~~--------------------------------------------------------------------------- 187 (280)
T d1dbia_ 183 GAVDQ--------------------------------------------------------------------------- 187 (280)
T ss_dssp EEECT---------------------------------------------------------------------------
T ss_pred eeecC---------------------------------------------------------------------------
Confidence 97321
Q ss_pred HHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCC
Q 045236 250 VKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPN 329 (604)
Q Consensus 250 ~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~ 329 (604)
.+.++.||++||.
T Consensus 188 -------------------------------------------------------------------~~~~a~~S~~g~~ 200 (280)
T d1dbia_ 188 -------------------------------------------------------------------YDRLASFSNYGTW 200 (280)
T ss_dssp -------------------------------------------------------------------TSCBCTTBCCSTT
T ss_pred -------------------------------------------------------------------CCCcCCcCCCCCc
Confidence 4567899999986
Q ss_pred CCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 045236 330 SLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTA 409 (604)
Q Consensus 330 ~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA 409 (604)
. |++|||.+|++.... ..|..++|||||||||||++|||+|. .+++.+||++|++||
T Consensus 201 ~--------d~~apg~~i~~~~~~-------------~~~~~~sGTS~AaP~vaG~~All~~~--~~t~~~v~~~L~~tA 257 (280)
T d1dbia_ 201 V--------DVVAPGVDIVSTITG-------------NRYAYMSGTSMASPHVAGLAALLASQ--GRNNIEIRQAIEQTA 257 (280)
T ss_dssp C--------CEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHTS
T ss_pred c--------cccCCccceeccccC-------------cceeccCCccccchHHHHHHHHHhCC--CcCHHHHHHHHHHhC
Confidence 5 999999999998876 58999999999999999999999995 458999999999999
Q ss_pred ccCCCCCCccccCCCCCCCCCCCCCCcccCccccCC
Q 045236 410 YNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALN 445 (604)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A~~ 445 (604)
++... +...||+|+||+.+||+
T Consensus 258 ~~~~~--------------~~~~~G~G~ln~~~Al~ 279 (280)
T d1dbia_ 258 DKISG--------------TGTYFKYGRINSYNAVT 279 (280)
T ss_dssp BCCTT--------------BTTTBSSEECCHHHHHT
T ss_pred cCCCC--------------CCCcCCCCeEcHHHHcC
Confidence 87642 23579999999999986
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=5.2e-40 Score=331.32 Aligned_cols=227 Identities=33% Similarity=0.493 Sum_probs=191.4
Q ss_pred ceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC
Q 045236 13 KIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG 92 (604)
Q Consensus 13 Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g 92 (604)
++...++|..+ ..++.|.+||||||||||++.... ....|+||+|+|+.+|++...+
T Consensus 42 ~~~~~~~~~~~--------------~~~~~d~~~HGT~vAgii~~~~~~---------~~~~giap~a~i~~~~v~~~~~ 98 (269)
T d1gcia_ 42 NIRGGASFVPG--------------EPSTQDGNGHGTHVAGTIAALNNS---------IGVLGVAPSAELYAVKVLGASG 98 (269)
T ss_dssp CEEEEEECSTT--------------CCSCSCSSSHHHHHHHHHHCCCSS---------SBCCCSSTTCEEEEEECBCTTS
T ss_pred CccccccccCC--------------CCCccccchhhheecccccccCCC---------ccccccCCceEEEEEEEecCCC
Confidence 45566666543 234678899999999999987532 2347999999999999998765
Q ss_pred -CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCcccCCCceEeecc
Q 045236 93 -CFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTVGA 171 (604)
Q Consensus 93 -~~~~dil~aid~A~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA 171 (604)
.....+.++++++...++++||+|||... .......+...+.++|++||+||||+|......+...+++|+||+
T Consensus 99 ~~~~~~~~~ai~~~~~~~~~~in~s~g~~~-----~~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga 173 (269)
T d1gcia_ 99 SGSVSSIAQGLEWAGNNGMHVANLSLGSPS-----PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGA 173 (269)
T ss_dssp CBCHHHHHHHHHHHHHTTCSEEEECCCBSS-----CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEE
T ss_pred CccHHHHHHHHHHHHhcccccccccccccc-----ccchHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEE
Confidence 66778999999999999999999999872 234455666788899999999999999887777888899999997
Q ss_pred CCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHH
Q 045236 172 STIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVK 251 (604)
Q Consensus 172 st~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~ 251 (604)
.+.
T Consensus 174 ~~~----------------------------------------------------------------------------- 176 (269)
T d1gcia_ 174 TDQ----------------------------------------------------------------------------- 176 (269)
T ss_dssp ECT-----------------------------------------------------------------------------
T ss_pred Ecc-----------------------------------------------------------------------------
Confidence 421
Q ss_pred hcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCC
Q 045236 252 LAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSL 331 (604)
Q Consensus 252 ~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~ 331 (604)
.+.++.||++||..
T Consensus 177 -----------------------------------------------------------------~~~~~~~S~~G~~~- 190 (269)
T d1gcia_ 177 -----------------------------------------------------------------NNNRASFSQYGAGL- 190 (269)
T ss_dssp -----------------------------------------------------------------TSCBCTTCCCSTTE-
T ss_pred -----------------------------------------------------------------CCCcccccCCCCCc-
Confidence 44567899999875
Q ss_pred CCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccc
Q 045236 332 TAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYN 411 (604)
Q Consensus 332 ~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~ 411 (604)
||+|||..+.++.+. ..|..++|||||||+|||++|||+|++|+|+++|||++|++||++
T Consensus 191 -------di~Apg~~~~~~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~ 250 (269)
T d1gcia_ 191 -------DIVAPGVNVQSTYPG-------------STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATS 250 (269)
T ss_dssp -------EEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBC
T ss_pred -------eEEEeeecceeccCC-------------CceEecCCcchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcc
Confidence 999999999998876 579999999999999999999999999999999999999999987
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCcccCccccCC
Q 045236 412 LDNSGENIKDLASGEESTPFIHGAGHVDPNRALN 445 (604)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A~~ 445 (604)
... ...||+|+||+.+|++
T Consensus 251 ~g~---------------~~~~G~G~ln~~~Avk 269 (269)
T d1gcia_ 251 LGS---------------TNLYGSGLVNAEAATR 269 (269)
T ss_dssp CSC---------------HHHHTTCBCCHHHHTC
T ss_pred CCC---------------CCCcccCeEcHHHhcC
Confidence 632 2468999999999986
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=1e-39 Score=330.82 Aligned_cols=229 Identities=28% Similarity=0.390 Sum_probs=194.9
Q ss_pred CCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecC
Q 045236 11 NKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWS 90 (604)
Q Consensus 11 n~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~ 90 (604)
.+|++..++|.++ +.+|.|..|||||||++|++.... ...+.|+||+|+|+.+|++..
T Consensus 49 ~~~~~~~~~~~~~--------------~~~~~d~~~HGT~vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~ 106 (279)
T d1thma_ 49 AGKVVGGWDFVDN--------------DSTPQNGNGHGTHCAGIAAAVTNN--------STGIAGTAPKASILAVRVLDN 106 (279)
T ss_dssp TTTEEEEEETTTT--------------BSCCCCSSSHHHHHHHHHHCCCSS--------SSSCCCSSTTCEEEEEECSCT
T ss_pred cCCeecccccccc--------------CcccccccccccccceeeeeccCC--------CccccccCCcceEEEEEEEec
Confidence 5688888888764 235788999999999999998642 233589999999999999987
Q ss_pred CC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCcccCCCceEee
Q 045236 91 PG-CFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATNIAPWILTV 169 (604)
Q Consensus 91 ~g-~~~~dil~aid~A~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitV 169 (604)
.+ +...+++++|+++++.+++|||+|||... .......+...+.++|+++|+|+||+|......+...+++|+|
T Consensus 107 ~~~~~~~~~~~ai~~~~~~~~~i~n~S~G~~~-----~~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~V 181 (279)
T d1thma_ 107 SGSGTWTAVANGITYAADQGAKVISLSLGGTV-----GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAV 181 (279)
T ss_dssp TSCCCHHHHHHHHHHHHHTTCSEEEECCCBSS-----CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEE
T ss_pred CCCCcHHHHHHHHHHHhhcCCceeccccCccc-----cchhHHHHHHHHHhcCceEEEeccccccCCCcccccccccccc
Confidence 66 67888999999999999999999999882 3455666777888999999999999998877777788999999
Q ss_pred ccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHH
Q 045236 170 GASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAA 249 (604)
Q Consensus 170 gAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~ 249 (604)
||++.
T Consensus 182 ga~~~--------------------------------------------------------------------------- 186 (279)
T d1thma_ 182 ASTDQ--------------------------------------------------------------------------- 186 (279)
T ss_dssp EEECT---------------------------------------------------------------------------
T ss_pred ccccC---------------------------------------------------------------------------
Confidence 97421
Q ss_pred HHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCC
Q 045236 250 VKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPN 329 (604)
Q Consensus 250 ~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~ 329 (604)
.+.++.||++|+.
T Consensus 187 -------------------------------------------------------------------~~~~~~~S~~G~~ 199 (279)
T d1thma_ 187 -------------------------------------------------------------------NDNKSSFSTYGSW 199 (279)
T ss_dssp -------------------------------------------------------------------TSCBCTTCCCCTT
T ss_pred -------------------------------------------------------------------CCCCccccCCCce
Confidence 4567889999998
Q ss_pred CCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 045236 330 SLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTA 409 (604)
Q Consensus 330 ~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA 409 (604)
. ||.|||..|+++.+. +.|..++|||||||||||++|||+|.+| ++.+||++|++||
T Consensus 200 ~--------di~Apg~~i~~~~~~-------------~~~~~~sGTS~AaP~vaG~~ALl~~~~~--s~~~i~~~L~~tA 256 (279)
T d1thma_ 200 V--------DVAAPGSSIYSTYPT-------------STYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTA 256 (279)
T ss_dssp C--------CEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTC
T ss_pred E--------EEeeeeeccccccCc-------------ccccccCCcchhhHHHHHHHHHHhcCCc--CHHHHHHHHHhhC
Confidence 6 999999999999886 5799999999999999999999999765 7899999999999
Q ss_pred ccCCCCCCccccCCCCCCCCCCCCCCcccCccccCC
Q 045236 410 YNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALN 445 (604)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A~~ 445 (604)
+++.. ....||+|+||+.+||+
T Consensus 257 ~~~~g--------------~~~~~G~G~vn~~~Av~ 278 (279)
T d1thma_ 257 DKISG--------------TGTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp BCCTT--------------BTTTBSSEECCHHHHHH
T ss_pred ccCCC--------------CCCcceeeeEcHHHhhC
Confidence 87642 23579999999999985
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=6.6e-40 Score=331.38 Aligned_cols=232 Identities=30% Similarity=0.438 Sum_probs=191.0
Q ss_pred CCCCCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEe
Q 045236 8 SACNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKI 87 (604)
Q Consensus 8 ~~cn~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv 87 (604)
.|..-|+++.++|..+. ..+.|.+||||||||||++.... ..+.|+||+|+|+.+|+
T Consensus 38 ~Hp~l~~~~~~~~~~~~--------------~~~~d~~gHGT~vAgii~~~~~~---------~~~~gvap~a~i~~~~~ 94 (274)
T d1r0re_ 38 SHPDLNVVGGASFVAGE--------------AYNTDGNGHGTHVAGTVAALDNT---------TGVLGVAPSVSLYAVKV 94 (274)
T ss_dssp TCTTCCEEEEEECSTTC--------------CTTCCSSSHHHHHHHHHHCCSSS---------SBCCCSSTTSEEEEEEC
T ss_pred CChhhcccCCccccCCC--------------CCCCCcccccccccccccccccc---------ccccccCCCcEEEEEEE
Confidence 34445778888887541 23568899999999999988632 12489999999999999
Q ss_pred ecCCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCC----CcccC
Q 045236 88 CWSPG-CFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPF----TATNI 162 (604)
Q Consensus 88 ~~~~g-~~~~dil~aid~A~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~----~~~~~ 162 (604)
++..+ +..+++++|++++.+++++|||+|||... ..........++.++++++|+||||+|.... ..+..
T Consensus 95 ~~~~~~~~~~~i~~ai~~a~~~~~~i~n~S~~~~~-----~~~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~ 169 (274)
T d1r0re_ 95 LNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGAS-----GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAK 169 (274)
T ss_dssp SCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSS-----CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTT
T ss_pred eCCCCCcCHHHHHHHHHHHHhcCCceecccccccc-----chhhhhHHHHHHhhCceEEEeeccCCCCCCCccccccccc
Confidence 98776 57889999999999999999999999882 2344555666788999999999999986532 33456
Q ss_pred CCceEeeccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCch
Q 045236 163 APWILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNA 242 (604)
Q Consensus 163 ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~ 242 (604)
.+++|+|||.+.
T Consensus 170 ~~~vi~Vga~~~-------------------------------------------------------------------- 181 (274)
T d1r0re_ 170 YDSVIAVGAVDS-------------------------------------------------------------------- 181 (274)
T ss_dssp STTSEEEEEECT--------------------------------------------------------------------
T ss_pred CCCEEEEEeECC--------------------------------------------------------------------
Confidence 788888887321
Q ss_pred hhhHHHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCcccc
Q 045236 243 RVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAA 322 (604)
Q Consensus 243 ~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~ 322 (604)
.+.++.
T Consensus 182 --------------------------------------------------------------------------~~~~~~ 187 (274)
T d1r0re_ 182 --------------------------------------------------------------------------NSNRAS 187 (274)
T ss_dssp --------------------------------------------------------------------------TSCBCT
T ss_pred --------------------------------------------------------------------------CCCccc
Confidence 456678
Q ss_pred ccCCCCCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHH
Q 045236 323 FSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIK 402 (604)
Q Consensus 323 fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik 402 (604)
||++||. |||+|||++|+++.+. +.|..++|||||||+|||++|||+|++|+|++++||
T Consensus 188 ~s~~g~~--------~di~APG~~i~~~~~~-------------~~~~~~sGTS~AaP~VaG~~All~~~~p~lt~~~i~ 246 (274)
T d1r0re_ 188 FSSVGAE--------LEVMAPGAGVYSTYPT-------------NTYATLNGTSMASPHVAGAAALILSKHPNLSASQVR 246 (274)
T ss_dssp TCCCSTT--------EEEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred ccCCCCC--------EEEEecCCCcccccCC-------------CCeEeecCCchhHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 9999985 4999999999999876 578999999999999999999999999999999999
Q ss_pred HHHHhccccCCCCCCccccCCCCCCCCCCCCCCcccCccccCC
Q 045236 403 SALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALN 445 (604)
Q Consensus 403 s~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A~~ 445 (604)
++|++||+++. +.+.+|+|+||+.+|++
T Consensus 247 ~~L~~tA~~~~---------------~~~~~G~G~ln~~~A~~ 274 (274)
T d1r0re_ 247 NRLSSTATYLG---------------SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp HHHHHTCBCCS---------------CHHHHTTCBCCHHHHTC
T ss_pred HHHHhhCccCC---------------CCCceEcCeecHHHhcC
Confidence 99999998763 23579999999999986
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=1.1e-39 Score=330.98 Aligned_cols=236 Identities=32% Similarity=0.464 Sum_probs=194.1
Q ss_pred CCCCCCCCceEEEEeccCCcccccCCCCCCCCCCCCC-CCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEE
Q 045236 5 FPASACNKKIIGARAFYRGYESYMERPIDETEESKSP-RDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIA 83 (604)
Q Consensus 5 f~~~~cn~Kiigar~~~~~~~~~~~~~~~~~~~~~sp-~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~ 83 (604)
++..|..-|+.+.++|.... .+| .+.++|||||||||+|.... ....|+||+|+|+
T Consensus 35 v~~~Hp~l~~~~~~~~~~~~--------------~~~~~~~~~HGT~vAgiiag~~~~---------~~~~giAp~a~l~ 91 (281)
T d1to2e_ 35 IDSSHPDLKVAGGASMVPSE--------------TNPFQDNNSHGTHVAGTVAALNNS---------IGVLGVAPSASLY 91 (281)
T ss_dssp CCTTCTTCCEEEEEECCTTC--------------CCTTCCSSSHHHHHHHHHHCCSSS---------SSBCCSSTTSEEE
T ss_pred CCCCChhhhhcCCccccCCC--------------CCCCcCcCCCCceeecccccCCCC---------CCcceeecccEEE
Confidence 44456666777777776531 122 24579999999999997522 2248999999999
Q ss_pred EEEeecCCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCC----CC
Q 045236 84 VYKICWSPG-CFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGP----FT 158 (604)
Q Consensus 84 ~~kv~~~~g-~~~~dil~aid~A~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~----~~ 158 (604)
.+|++...+ ...+++++||+++++.+++|||+|||.. .....+..++.++.++|+++|+||||+|... ..
T Consensus 92 ~~kv~~~~~~~~~~~~~~ai~~a~~~~~~v~n~S~g~~-----~~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~ 166 (281)
T d1to2e_ 92 AVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGP-----SGSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVG 166 (281)
T ss_dssp EEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBS-----CCCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCC
T ss_pred EEEEeCCCCCcCHHHHHHHHHHHHhccccccccccCCC-----cchHHHHHHHHHHHhcCCcceecccCcccCCCCCCcc
Confidence 999998766 6778899999999999999999999987 2346677788888999999999999998653 23
Q ss_pred cccCCCceEeeccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEec
Q 045236 159 ATNIAPWILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDR 238 (604)
Q Consensus 159 ~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~ 238 (604)
.+...+.+|+||+.+.
T Consensus 167 ~pa~~~~vi~Vga~~~---------------------------------------------------------------- 182 (281)
T d1to2e_ 167 YPGKYPSVIAVGAVDS---------------------------------------------------------------- 182 (281)
T ss_dssp BTTTSTTSEEEEEECT----------------------------------------------------------------
T ss_pred CCCCCCceEEEEeecC----------------------------------------------------------------
Confidence 4556788888887321
Q ss_pred CCchhhhHHHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCC
Q 045236 239 GGNARVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAP 318 (604)
Q Consensus 239 g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 318 (604)
.+
T Consensus 183 ------------------------------------------------------------------------------~~ 184 (281)
T d1to2e_ 183 ------------------------------------------------------------------------------SN 184 (281)
T ss_dssp ------------------------------------------------------------------------------TS
T ss_pred ------------------------------------------------------------------------------CC
Confidence 44
Q ss_pred ccccccCCCCCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCH
Q 045236 319 KVAAFSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSP 398 (604)
Q Consensus 319 ~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp 398 (604)
.++.||++||.. |+.|||..|+++.+. +.|..++|||||||+|||++|||+|++|.|++
T Consensus 185 ~~~~~S~~G~~~--------d~~apG~~i~s~~~~-------------~~~~~~~GTS~Aap~vaG~~All~~~~p~lt~ 243 (281)
T d1to2e_ 185 QRASFSSVGPEL--------DVMAPGVSIQSTLPG-------------NKYGAYNGTSMASPHVAGAAALILSKHPNWTN 243 (281)
T ss_dssp CBCTTCCCSTTC--------CEEEECSSEEEEETT-------------TEEEEECBHHHHHHHHHHHHHHHHHHSTTCCH
T ss_pred CCCcccCCCCCc--------cccCCCCCceeecCC-------------CeeEcccCcchhHHHHHHHHHHHHHHCCCCCH
Confidence 667899999876 999999999999876 57899999999999999999999999999999
Q ss_pred HHHHHHHHhccccCCCCCCccccCCCCCCCCCCCCCCcccCccccCCC
Q 045236 399 AAIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALNP 446 (604)
Q Consensus 399 ~~Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A~~~ 446 (604)
++||++|++||+++. +...||+|+||+.+|++.
T Consensus 244 ~~i~~~L~~tA~~~~---------------~~~~~G~G~ld~~~A~~~ 276 (281)
T d1to2e_ 244 TQVRSSLENTTTKLG---------------DSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp HHHHHHHHTTCBCCS---------------CHHHHTTCBCCHHHHTSS
T ss_pred HHHHHHHHhhCccCC---------------CCCCcccCcccHHHHHhh
Confidence 999999999998763 124789999999999983
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=7.4e-35 Score=298.70 Aligned_cols=257 Identities=28% Similarity=0.355 Sum_probs=190.9
Q ss_pred CCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecC
Q 045236 11 NKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWS 90 (604)
Q Consensus 11 n~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~ 90 (604)
.+|+...++|.... ......+.|.+||||||||||+|....+ ...+.||||+|+|+.+|++..
T Consensus 45 ~~~~~~~~~~~~~~----------~~~~~~~~d~~gHGT~VAgiiaa~~~~~-------~~~~~GvAp~a~l~~~~~~~~ 107 (309)
T d2ixta1 45 VNNVEQCKDFTGAT----------TPINNSCTDRNGHGTHVAGTALADGGSD-------QAGIYGVAPDADLWAYKVLLD 107 (309)
T ss_dssp TTTEEEEEESSSSS----------SCEETCCCCSSSHHHHHHHHHHCBCCTT-------SCSCBCSCTTSEEEEEECSCT
T ss_pred hccccccccccCCC----------CCCCCCcccccccccccccccccccccc-------chhhhhhhhhccceeeeeecC
Confidence 56888899987642 1223456788999999999999976432 223589999999999999887
Q ss_pred CC-CCHHHHHHHHHHHHHC-----CCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCC--cccC
Q 045236 91 PG-CFDSDILAAMDQAIAD-----GVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFT--ATNI 162 (604)
Q Consensus 91 ~g-~~~~dil~aid~A~~~-----gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--~~~~ 162 (604)
.+ +..++++++++++++. ...|+|+|++... .......+...+.++|+++|+||||++..... .+..
T Consensus 108 ~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~s~~~~~-----~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~ 182 (309)
T d2ixta1 108 SGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSA-----NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGA 182 (309)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHTCCEEEEECCCBSS-----CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTT
T ss_pred CCCcccccccccccccccccccccccccccccccccc-----cccchhccccchhcCCceEEEEeccccccCCCcCCchh
Confidence 65 6778889999988864 3468999999772 33455666677889999999999999866443 3345
Q ss_pred CCceEeeccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCch
Q 045236 163 APWILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNA 242 (604)
Q Consensus 163 ap~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~ 242 (604)
.+.+++|++.+........
T Consensus 183 ~~~~~~v~~~~~~~~~~~~------------------------------------------------------------- 201 (309)
T d2ixta1 183 LPNAIAVAALENVQQNGTY------------------------------------------------------------- 201 (309)
T ss_dssp STTSEEEEEEEEEEETTEE-------------------------------------------------------------
T ss_pred hhccccccccccccccccc-------------------------------------------------------------
Confidence 6777777763211100000
Q ss_pred hhhHHHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCcccc
Q 045236 243 RVEKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAA 322 (604)
Q Consensus 243 ~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~ 322 (604)
.. .. ......
T Consensus 202 ------------------------------------------------------------------~~---~~-~~~~~~ 211 (309)
T d2ixta1 202 ------------------------------------------------------------------RV---AD-YSSRGY 211 (309)
T ss_dssp ------------------------------------------------------------------EE---CT-TSCCCC
T ss_pred ------------------------------------------------------------------cc---cc-cccccc
Confidence 00 00 223345
Q ss_pred ccCCCCCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHH
Q 045236 323 FSSRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIK 402 (604)
Q Consensus 323 fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik 402 (604)
++++|+.. ....||||+|||.+|+++.+. ..|..++|||||||+|||++|||+|++|+|++.|||
T Consensus 212 ~~~~~~~~--~~~~~vdi~apG~~~~s~~~~-------------~~~~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~ 276 (309)
T d2ixta1 212 ISTAGDYV--IQEGDIEISAPGSSVYSTWYN-------------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLR 276 (309)
T ss_dssp TTTTTSSS--CCTTCCCEEEECSSEEEECTT-------------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred cccccccc--cCCCcceeecCCCceeeecCC-------------CcceeecCccchhHHHHHHHHHHHHHCCCCCHHHHH
Confidence 67777765 456799999999999999876 579999999999999999999999999999999999
Q ss_pred HHHHhccccCCCCCCccccCCCCCCCCCCCCCCcccCc
Q 045236 403 SALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDP 440 (604)
Q Consensus 403 s~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~ 440 (604)
++|++||++++..+... ....+++.+|+|++|+
T Consensus 277 ~~L~~tA~~~~~~~~~g-----~~~~~~~~~g~G~~~v 309 (309)
T d2ixta1 277 SNLQERAKSVDIKGGYG-----AAIGDDYASGFGFARV 309 (309)
T ss_dssp HHHHHHHHTSCCCBSTT-----CCSSSBTTTBTCBCCC
T ss_pred HHHHhhCccCCCCCCcC-----CccCCCcccCCCEecC
Confidence 99999999876543211 2345667889999874
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=2.3e-34 Score=291.22 Aligned_cols=201 Identities=34% Similarity=0.416 Sum_probs=166.4
Q ss_pred CCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-CCHHHHHHHHHHHHHC-------CCc
Q 045236 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDILAAMDQAIAD-------GVD 111 (604)
Q Consensus 40 sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~aid~A~~~-------gvd 111 (604)
++.|.+||||||||||+|+. .|+||+|+|+.+|++.... ...+++.++++++... +++
T Consensus 62 ~~~d~~gHGT~VAgiia~~~--------------~G~a~~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (279)
T d2pwaa1 62 SSRDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGV 127 (279)
T ss_dssp CSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEE
T ss_pred CcccccCccccccccccccc--------------cccCCCccccceeeecCCcccccccccchhheeccccccccccccc
Confidence 46788999999999999874 6999999999999987765 6677888999988864 345
Q ss_pred EEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCC-cccCCCceEeeccCCCCCccceEEEcCCCcEE
Q 045236 112 VISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFT-ATNIAPWILTVGASTIDREFPADAILGDGRIF 190 (604)
Q Consensus 112 VIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~-~~~~ap~vitVgAst~d~~~~~~~~~~~~~~~ 190 (604)
|+|+|||.. ..+.+..++.++.++|+++|+|+||++..... .+...|++|+|||.+.
T Consensus 128 i~n~s~g~~------~~~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~~---------------- 185 (279)
T d2pwaa1 128 VASLSLGGG------YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDR---------------- 185 (279)
T ss_dssp EEEECCCEE------CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECT----------------
T ss_pred ceeccCCCc------cccccchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEee----------------
Confidence 999999977 24567777788889999999999999865433 4556788999987321
Q ss_pred EeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccc
Q 045236 191 GGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEEL 270 (604)
Q Consensus 191 ~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~ 270 (604)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T d2pwaa1 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEec
Q 045236 271 IADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILAA 350 (604)
Q Consensus 271 ~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa 350 (604)
.+.++.||++||.. ||+|||.+|+++
T Consensus 186 ----------------------------------------------~g~~~~~S~~G~~~--------dv~APG~~i~s~ 211 (279)
T d2pwaa1 186 ----------------------------------------------YDRRSSFSNYGSVL--------DIFGPGTDILST 211 (279)
T ss_dssp ----------------------------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEE
T ss_pred ----------------------------------------------cCCCccccCCCCcc--------cccccccccccc
Confidence 45678999999875 999999999999
Q ss_pred ccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCC
Q 045236 351 WTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIKDLASGEESTP 430 (604)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~ 430 (604)
++. +.|..++|||||||+|||++|||+|++|.++++++|. |++||++.. .
T Consensus 212 ~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~-ll~ta~~~~----------------~ 261 (279)
T d2pwaa1 212 WIG-------------GSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACRY-IADTANKGD----------------L 261 (279)
T ss_dssp ETT-------------TEEEEECSHHHHHHHHHHHHHHHHHTTSCCTTTHHHH-HHHHSEESC----------------C
T ss_pred ccC-------------CcccCCCcchhHHHHHHHHHHHHHHhCCCChHHHHHH-HHHhCcCCC----------------C
Confidence 876 5899999999999999999999999999999888775 677887542 2
Q ss_pred CCCCCcccCc
Q 045236 431 FIHGAGHVDP 440 (604)
Q Consensus 431 ~~~G~G~id~ 440 (604)
...|+|++|.
T Consensus 262 ~~~g~g~~n~ 271 (279)
T d2pwaa1 262 SNIPFGTVNL 271 (279)
T ss_dssp BSCCTTSCCE
T ss_pred CCCCCCChhh
Confidence 3579999885
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=1.4e-33 Score=290.24 Aligned_cols=262 Identities=29% Similarity=0.345 Sum_probs=192.2
Q ss_pred CCCceEEEEeccCCcccccCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeec
Q 045236 10 CNKKIIGARAFYRGYESYMERPIDETEESKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICW 89 (604)
Q Consensus 10 cn~Kiigar~~~~~~~~~~~~~~~~~~~~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~ 89 (604)
.++|++..+.+... .++.|..||||||||||+|+... ..||||+|+|+.+|++.
T Consensus 46 ~~~~~~~~~~~~~~---------------~~~~d~~gHGT~vAgiiag~~~~-----------~~GvAp~a~l~~~~v~~ 99 (318)
T d1wmda2 46 FRGKITALYALGRT---------------NNANDTNGHGTHVAGSVLGNGST-----------NKGMAPQANLVFQSIMD 99 (318)
T ss_dssp TTTCEEEEEETTTT---------------TCCCCSSSHHHHHHHHHHCCSSS-----------SCCSSTTSEEEEEECCC
T ss_pred cCCcEEeecCCCCC---------------CCCCCCCCCCccceeeccccccc-----------cchhhhcccceeeeeee
Confidence 45666666655432 34668899999999999997532 27999999999999998
Q ss_pred CCC---CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCccc--CCC
Q 045236 90 SPG---CFDSDILAAMDQAIADGVDVISLSVGASGYAPQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATN--IAP 164 (604)
Q Consensus 90 ~~g---~~~~dil~aid~A~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~--~ap 164 (604)
..+ .....+..+++++...+++|+|+|||... ..........+...+.++++++|+|+||.|........ ..+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~g~~~--~~~~~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~ 177 (318)
T d1wmda2 100 SGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAV--NGAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAK 177 (318)
T ss_dssp TTSSCTTSCSSHHHHHHHHHHTTCSEEEECCCBCC--TTCCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCS
T ss_pred ecccccccchhhHHHHHHHHhcCCceeeccccccc--ccccchhHHHHHHHHhhcceeeeeeeccccccccccccccccc
Confidence 765 23445678999999999999999999873 33344555666666779999999999999976554432 345
Q ss_pred ceEeeccCCCCCccceEEEcCCCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhh
Q 045236 165 WILTVGASTIDREFPADAILGDGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARV 244 (604)
Q Consensus 165 ~vitVgAst~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~ 244 (604)
.++++.+........ .
T Consensus 178 ~~i~~~~~~~~~~~~---------------------------------------~------------------------- 193 (318)
T d1wmda2 178 NAITVGATENLRPSF---------------------------------------G------------------------- 193 (318)
T ss_dssp SSEEEEEECCSCGGG---------------------------------------C-------------------------
T ss_pred cccceeeccCccccc---------------------------------------c-------------------------
Confidence 566665432111000 0
Q ss_pred hHHHHHHhcCceEEEEEcCCCCCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCcccccc
Q 045236 245 EKGAAVKLAGGLGMILANTDESGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFS 324 (604)
Q Consensus 245 ~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fS 324 (604)
..... ...+..+|
T Consensus 194 ------------------------------------------------------------------~~~~~-~~~~~~~s 206 (318)
T d1wmda2 194 ------------------------------------------------------------------SYADN-INHVAQFS 206 (318)
T ss_dssp ------------------------------------------------------------------GGGSC-TTSBCTTS
T ss_pred ------------------------------------------------------------------ccccc-cccccccc
Confidence 00001 44667899
Q ss_pred CCCCCCCCCCccCCceEeCCCcEEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhC-----CCCCHH
Q 045236 325 SRGPNSLTAEILKPDVIAPGVNILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAY-----PDWSPA 399 (604)
Q Consensus 325 S~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~-----P~~sp~ 399 (604)
++||.. ....|||+.|||.+|+++.......... .......|..++|||||||||||++|||+|++ +.|++.
T Consensus 207 ~~G~~~--~~~~~~~~~a~G~~i~~~~~~~~~~~~~-~~~~~~~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~ 283 (318)
T d1wmda2 207 SRGPTK--DGRIKPDVMAPGTFILSARSSLAPDSSF-WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPS 283 (318)
T ss_dssp CCCCCT--TSCCCCCEEEECSSEEEECCTTCCGGGS-SEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHH
T ss_pred ccCCCc--CCCcccceeecCceEEeccccccccCcc-ccCCCcceeeccCcchhhHHHHHHHHHHHHHhHhhcCCCCCHH
Confidence 999987 5688999999999999988764322111 11122568889999999999999999999974 468999
Q ss_pred HHHHHHHhccccCCCCCCccccCCCCCCCCCCCCCCcccCccccCC
Q 045236 400 AIKSALMTTAYNLDNSGENIKDLASGEESTPFIHGAGHVDPNRALN 445 (604)
Q Consensus 400 ~Iks~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A~~ 445 (604)
+||++|++||++.. ...+...||||+||+.+||+
T Consensus 284 ~i~~~l~~tA~~~~------------~~~~~~~~G~G~ld~~~Al~ 317 (318)
T d1wmda2 284 LLKAALIAGAADIG------------LGYPNGNQGWGRVTLDKSLN 317 (318)
T ss_dssp HHHHHHHHHCBCCS------------SCSSCTTTTTCBCCHHHHHT
T ss_pred HHHHHHHhhCccCC------------CCCCCCCeeeceecHHHHhC
Confidence 99999999998763 23456789999999999986
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=1.8e-30 Score=268.47 Aligned_cols=235 Identities=17% Similarity=0.180 Sum_probs=156.6
Q ss_pred CCCCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCCCCHHHHHHHHHHHHH-CCCcEEEEc
Q 045236 38 SKSPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIA-DGVDVISLS 116 (604)
Q Consensus 38 ~~sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~dil~aid~A~~-~gvdVIn~S 116 (604)
...+.|.+||||||||||+|...... ...|+||+++|+.+|+... ...+.+.++.++++ .+++++|+|
T Consensus 77 ~~~~~~~~gHGT~vAgiia~~~~n~~--------~~~g~a~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~n~S 145 (334)
T d1p8ja2 77 RYTQMNDNRHGTRCAGEVAAVANNGV--------CGVGVAYNARIGGVRMLDG---EVTDAVEARSLGLNPNHIHIYSAS 145 (334)
T ss_dssp CCCTTCTTCHHHHHHHHHHCCSSSSS--------SCCCTTTTSEEEEEECSSS---CCCHHHHHHHHTSCTTTCCEEEEC
T ss_pred ccccccCccchhhhhhhhhhcccccc--------ccccccccccccchhhccc---cccchHHHHHHHhhhcCCcEEeCC
Confidence 34456889999999999999864321 2379999999999999753 33455667777665 689999999
Q ss_pred ccCCCCCCCCc-------ccHHHHHHHhhhcCCcEEEEcCCCCCCCCCCccc----CCCceEeeccCCCCCccceEEEcC
Q 045236 117 VGASGYAPQYD-------QDSIAIGSFGAAQHGVVVSCSAGNSGPGPFTATN----IAPWILTVGASTIDREFPADAILG 185 (604)
Q Consensus 117 lG~~~~~~~~~-------~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~----~ap~vitVgAst~d~~~~~~~~~~ 185 (604)
||.......+. ...+..+...+..+|+++|+||||++........ ..+.+++|++.+.
T Consensus 146 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~~~----------- 214 (334)
T d1p8ja2 146 WGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQ----------- 214 (334)
T ss_dssp CBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECT-----------
T ss_pred CCCCCcCcccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCcccccccccccccccccc-----------
Confidence 99763111110 1112233344557899999999998754432211 2233444443211
Q ss_pred CCcEEEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCC
Q 045236 186 DGRIFGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDE 265 (604)
Q Consensus 186 ~~~~~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~ 265 (604)
T Consensus 215 -------------------------------------------------------------------------------- 214 (334)
T d1p8ja2 215 -------------------------------------------------------------------------------- 214 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCC
Q 045236 266 SGEELIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGV 345 (604)
Q Consensus 266 ~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~ 345 (604)
.+..+.||++|+... .+..+||.
T Consensus 215 ---------------------------------------------------~g~~~~~s~~~~~~~------~~~~~~~~ 237 (334)
T d1p8ja2 215 ---------------------------------------------------FGNVPWYSEACSSTL------ATTYSSGN 237 (334)
T ss_dssp ---------------------------------------------------TSCCCTTCCBCTTCC------EEEECCCS
T ss_pred ---------------------------------------------------CCceeeecccCCccc------cccccccc
Confidence 334455666665431 13334443
Q ss_pred c-----EEecccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccc
Q 045236 346 N-----ILAAWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENIK 420 (604)
Q Consensus 346 ~-----I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~~~~~~ 420 (604)
. +.+... ...|..++|||||||||||++|||+|++|+|++.|||++|++||++.......+.
T Consensus 238 ~~~~~~~~~~~~-------------~~~~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~~L~~TA~~~~~~~~~~~ 304 (334)
T d1p8ja2 238 QNEKQIVTTDLR-------------QKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWA 304 (334)
T ss_dssp TTSCCEEEEETT-------------TEEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCE
T ss_pred cccccccccccC-------------CccccCCCCccccchHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCCcccc
Confidence 2 222221 2578899999999999999999999999999999999999999998765443332
Q ss_pred cCCCCCCCCCCCCCCcccCccccCC
Q 045236 421 DLASGEESTPFIHGAGHVDPNRALN 445 (604)
Q Consensus 421 ~~~~~~~~~~~~~G~G~id~~~A~~ 445 (604)
... ........||+|+||+.+||+
T Consensus 305 ~~~-~~~~~~~~~G~G~lna~~Av~ 328 (334)
T d1p8ja2 305 TNG-VGRKVSHSYGYGLLDAGAMVA 328 (334)
T ss_dssp ECT-TSCEEBTTTBTCBCCHHHHHH
T ss_pred ccC-CCcccCCCCcceEeCHHHHHH
Confidence 222 222334578999999999987
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=3.5e-30 Score=267.08 Aligned_cols=237 Identities=19% Similarity=0.184 Sum_probs=165.7
Q ss_pred CCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCCCCHHHHHHHHHHHHHCCCcEEEEcccCC
Q 045236 41 PRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIADGVDVISLSVGAS 120 (604)
Q Consensus 41 p~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~dil~aid~A~~~gvdVIn~SlG~~ 120 (604)
+.++++||||||++|+|....+ ..+.|+||+|+|+.+++... .....++..++.++++. .+|+|+|+|..
T Consensus 86 ~~~~~~HGT~vag~iaa~~~~~--------~~~~Gvap~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~v~~~s~g~~ 155 (339)
T d2id4a2 86 RLSDDYHGTRCAGEIAAKKGNN--------FCGVGVGYNAKISGIRILSG-DITTEDEAASLIYGLDV-NDIYSCSWGPA 155 (339)
T ss_dssp CSTTTTHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECTTS-CCCHHHHHHHTTTTTTT-CSEEEECEESC
T ss_pred Ccccccccceeeeccccccccc--------ccccccccccccceEEEeec-cccchHHHHHHHHHHhh-CCEEeccCCCC
Confidence 4567899999999999976432 22489999999999999753 36677778888777665 59999999975
Q ss_pred CCCCCC--c----ccH-HHHHHHhhhcCCcEEEEcCCCCCCCCCCcc--c--CCCceEeeccCCCCCccceEEEcCCCcE
Q 045236 121 GYAPQY--D----QDS-IAIGSFGAAQHGVVVSCSAGNSGPGPFTAT--N--IAPWILTVGASTIDREFPADAILGDGRI 189 (604)
Q Consensus 121 ~~~~~~--~----~~~-~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~--~--~ap~vitVgAst~d~~~~~~~~~~~~~~ 189 (604)
...... . ... ...+...+..+|+++|+||||++....... . ..+.+++|++.+
T Consensus 156 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 219 (339)
T d2id4a2 156 DDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAID---------------- 219 (339)
T ss_dssp CSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEEC----------------
T ss_pred CCcccccCccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCcccccccccccccccccccc----------------
Confidence 311111 0 111 223334455789999999999875432211 1 112222222210
Q ss_pred EEeeeeccCCCCCCceeeEEEcCCCCCCcccCCCCCCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCcc
Q 045236 190 FGGVSLYAGESLPDFKLHLVYGGDCGDRFCYMGRLEPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEE 269 (604)
Q Consensus 190 ~~g~~~~~~~~~~~~~~~lv~~~~~~~~~C~~~~~~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~ 269 (604)
T Consensus 220 -------------------------------------------------------------------------------- 219 (339)
T d2id4a2 220 -------------------------------------------------------------------------------- 219 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccceEEEchhhHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccccCCCCCCCCCCccCCceEeCCCcEEe
Q 045236 270 LIADSHLIPATMVGAIAGDKIREYIKLSQYPTATIVFRGTVISPSPPAPKVAAFSSRGPNSLTAEILKPDVIAPGVNILA 349 (604)
Q Consensus 270 ~~~~~~~ip~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~s 349 (604)
. .+..+.+|++|+.. ...++..+||..+.+
T Consensus 220 ---------------------------------------------~-~g~~~~~s~~~~~~----~~~~~~~~~g~~~~s 249 (339)
T d2id4a2 220 ---------------------------------------------H-KDLHPPYSEGCSAV----MAVTYSSGSGEYIHS 249 (339)
T ss_dssp ---------------------------------------------T-TSCCCTTCCCCTTE----EEEEECSBTTBCEEE
T ss_pred ---------------------------------------------c-cccccccccccCcc----ceeeeeeccccccce
Confidence 1 44556777777654 345678889999988
Q ss_pred cccCCCCCCCCCCCCCCccceEecCcccchhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCcc-ccCCCCCCC
Q 045236 350 AWTGSTGPTDLEIDPRRVDFNIISGTSMSCPHVSGLAALLRKAYPDWSPAAIKSALMTTAYNLDNSGENI-KDLASGEES 428 (604)
Q Consensus 350 a~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~~~~~-~~~~~~~~~ 428 (604)
+.... ..|..++|||||||||||++|||+|+||+|++.|||++|++||.+++...... .+.. ....
T Consensus 250 ~~~~~------------~~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~tA~~~~~~~~~~~~~~~-~~~~ 316 (339)
T d2id4a2 250 SDING------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSA-MGKK 316 (339)
T ss_dssp ECSTT------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEECS-SSSE
T ss_pred eccCC------------CccccCCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCCCCCccccccC-CCCC
Confidence 76543 57899999999999999999999999999999999999999999876432211 1111 2233
Q ss_pred CCCCCCCcccCccccCCC
Q 045236 429 TPFIHGAGHVDPNRALNP 446 (604)
Q Consensus 429 ~~~~~G~G~id~~~A~~~ 446 (604)
....||||+||+.+||+.
T Consensus 317 ~~~~~G~G~ln~~~Av~~ 334 (339)
T d2id4a2 317 YSHRYGFGKIDAHKLIEM 334 (339)
T ss_dssp EBTTTBTCBCCHHHHHHH
T ss_pred cCCCccchhhCHHHHHHH
Confidence 456799999999999983
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.89 E-value=1.7e-24 Score=226.86 Aligned_cols=123 Identities=19% Similarity=0.134 Sum_probs=92.5
Q ss_pred CCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCC-CCHHHHHHHHHHHHHC-CCcEEEEcccC
Q 045236 42 RDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPG-CFDSDILAAMDQAIAD-GVDVISLSVGA 119 (604)
Q Consensus 42 ~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~dil~aid~A~~~-gvdVIn~SlG~ 119 (604)
.+..+||||+++++.+... ...+.|+||+|+|+++|++.+.+ ....+++++|++|+++ +++|||+|||.
T Consensus 65 ~~~~~~~~~~~~~~e~~ld---------~~~~~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~ 135 (369)
T d1ga6a_ 65 SSNGDYSDDQQGQGEWDLD---------SQSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGW 135 (369)
T ss_dssp CTTSCCCBCHHHHHHHHHH---------HHHHHHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCE
T ss_pred CCCCCCCCCCCcceeeccc---------cccccccccCceEEEEEEeCCCCCcchHHHHHHHHHHHHcCCCceeeccccc
Confidence 3567899999999876642 12258999999999999998766 5677899999999964 79999999997
Q ss_pred CCC--CCCCcccHHHHHHHhhhcCCcEEEEcCCCCCCCCC-------------CcccCCCceEeeccCC
Q 045236 120 SGY--APQYDQDSIAIGSFGAAQHGVVVSCSAGNSGPGPF-------------TATNIAPWILTVGAST 173 (604)
Q Consensus 120 ~~~--~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-------------~~~~~ap~vitVgAst 173 (604)
... ......+.+..++.++.++||+||+||||+|.... ..+...+++++|+++.
T Consensus 136 ~~~~~~~~~~~~~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~ 204 (369)
T d1ga6a_ 136 CEADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTT 204 (369)
T ss_dssp EHHHHHHTTHHHHHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEE
T ss_pred cccCCCcchHHHHHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeec
Confidence 520 01223345667777888999999999999986432 1234568889988743
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.86 E-value=2.3e-23 Score=216.14 Aligned_cols=123 Identities=23% Similarity=0.300 Sum_probs=82.5
Q ss_pred CCCCCCCChHHHHHHhhcCCCCCCCccccCCCceeeecCCCeEEEEEeecCCCCCHHHHHHHHHHHHH---CCCcEEEEc
Q 045236 40 SPRDTEGHGTHTASTAAGSLVSNASLFDYARGEARGMAVKARIAVYKICWSPGCFDSDILAAMDQAIA---DGVDVISLS 116 (604)
Q Consensus 40 sp~D~~GHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~dil~aid~A~~---~gvdVIn~S 116 (604)
.+.|.+||+||+++++++...+.. .....+.||||+|+|+.+|+... ...++.++++++. .+++|||+|
T Consensus 57 ~~~~~~g~~~~~~g~~~~~~~~~~----~d~~~~~GvAp~A~i~~~~~~~~----~~~~~~~i~~~~~~~~~~~~Vin~S 128 (357)
T d1t1ga_ 57 VSVSVDGATNQPTGDPNGPDGEVE----LDIEVAGALAPGAKIAVYFAPNT----DAGFLNAITTAVHDPTHKPSIVSIS 128 (357)
T ss_dssp EEEESTTCCCCCCSCTTSTHHHHH----HHHHHHHHHSTTSEEEEEECCSS----HHHHHHHHHHHHHCTTTCCSEEEEC
T ss_pred ceeCCCCCCCCCCCcccccccccc----CCcccceeecccCeEEEEecccC----CCchHHHHHHHHHhhhcCCeEEecc
Confidence 345678899988888765532110 01122589999999999999643 3445566666654 589999999
Q ss_pred ccCCCCCCCCc---ccHHHHHHHhhhcCCcEEEEcCCCCCCCCC--------CcccCCCceEeeccC
Q 045236 117 VGASGYAPQYD---QDSIAIGSFGAAQHGVVVSCSAGNSGPGPF--------TATNIAPWILTVGAS 172 (604)
Q Consensus 117 lG~~~~~~~~~---~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~--------~~~~~ap~vitVgAs 172 (604)
||... ..+. ...+......+..+|+++|+++||+|.... ......+++++|++.
T Consensus 129 ~G~~~--~~~~~~~~~~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~ 193 (357)
T d1t1ga_ 129 WGGPE--DSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGT 193 (357)
T ss_dssp CCEEG--GGSCHHHHHHHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEE
T ss_pred cccCc--CccccchHHHHHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeee
Confidence 99862 2221 234555666677899999999999985432 122356778888764
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.91 E-value=0.00051 Score=62.13 Aligned_cols=87 Identities=18% Similarity=0.168 Sum_probs=62.7
Q ss_pred ceeeEEEcCCCCCCcccCCCCC--CCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcCCCCCccc-----------
Q 045236 204 FKLHLVYGGDCGDRFCYMGRLE--PSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANTDESGEEL----------- 270 (604)
Q Consensus 204 ~~~~lv~~~~~~~~~C~~~~~~--~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~----------- 270 (604)
.+-+|||.+- |....|. ..+++|||+|+++|.+.+.+|+.+|++.||.|+|+|.+..+....
T Consensus 39 v~g~lVy~n~-----G~~~Df~~L~~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~ 113 (193)
T d1de4c2 39 VTGKLVHANF-----GTKKDFEDLYTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAH 113 (193)
T ss_dssp EEECEEECST-----TCHHHHHTCSSCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECC
T ss_pred eeEEEEEccC-----CCHHHHHHhccccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCcccccccccc
Confidence 3557888643 2111111 357999999999999999999999999999999999864321100
Q ss_pred --cc---------------------cccccceEEEchhhHHHHHHHHh
Q 045236 271 --IA---------------------DSHLIPATMVGAIAGDKIREYIK 295 (604)
Q Consensus 271 --~~---------------------~~~~ip~~~i~~~~g~~l~~~~~ 295 (604)
.. .-..||+.-|+..+++.|+..++
T Consensus 114 ~~~GDPlTPg~ps~~~~~~~~~~~~~lP~IP~~PIS~~dA~~lL~~L~ 161 (193)
T d1de4c2 114 LGTGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 161 (193)
T ss_dssp SSSSCTTSTTSCCCGGGTCCSCCCTTSCSSCEEECCHHHHHHHHTTBC
T ss_pred cCCCCCCCCCcccccccccCccccCCCCcCCeeeCCHHHHHHHHHHcC
Confidence 00 11248999999999999998764
|
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Glutamate carboxypeptidase II species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.29 E-value=0.0017 Score=60.51 Aligned_cols=55 Identities=29% Similarity=0.290 Sum_probs=44.0
Q ss_pred ceeeEEEcCCCCCCcccCCCC------CCCCccccEEEEecCCchhhhHHHHHHhcCceEEEEEcC
Q 045236 204 FKLHLVYGGDCGDRFCYMGRL------EPSKVQGKIVVCDRGGNARVEKGAAVKLAGGLGMILANT 263 (604)
Q Consensus 204 ~~~~lv~~~~~~~~~C~~~~~------~~~~~~gkIvl~~~g~~~~~~~~~~~~~aGa~g~i~~~~ 263 (604)
.+-++||.+- |....+ ..-+++|||+|+++|.+.+.+|+.+|++.||+|+|+|.+
T Consensus 53 v~g~~Vyvny-----G~~~Df~~L~~~~gi~~~gkIvl~ryG~~~~~~Kv~~A~~~GA~GviiysD 113 (233)
T d3bi1a2 53 PEGDLVYVNY-----ARTEDFFKLERDMKINCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSD 113 (233)
T ss_dssp CEECEEECTT-----CCHHHHHHHHHTSCCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECC
T ss_pred eeEEEEEecC-----CcHHHHHHHHHhcCCcccceEEEEeCCCCchhHHHHHHHHcCceEEEEecC
Confidence 4567888643 322222 245899999999999999999999999999999999986
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=95.57 E-value=0.081 Score=42.36 Aligned_cols=92 Identities=11% Similarity=0.076 Sum_probs=63.2
Q ss_pred CCCCceeeeccCCCceEEEEEEEeccCCCCceE-EEEEEECCCCcEEEEEcceEEEcccceeEEEEEEEEeeccCCCCCC
Q 045236 494 LNYPSFSVVFNSNNDVVKYKRVVKNVGSSVDAV-YEVKVNAPPNVAVNVWPSKLAFSAEKKALAYEITFSSVGLDGLGVS 572 (604)
Q Consensus 494 ln~ps~~~~~~~~~~~~t~~rtv~n~~~~~~~t-y~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 572 (604)
+..|++.+.- +++.+++.+|+|.|.. ..+ -.+.+..|.|=+++ |....+ ++||++++++++++.... ..
T Consensus 6 ~t~p~~~v~p---G~~~~~~vtVtN~g~~-~~~~~~~~~~~P~GW~v~--~~~~~L-~pG~s~~~~~~Vt~p~~a---~~ 75 (103)
T d1w8oa1 6 FTIPDVALEP---GQQVTVPVAVTNQSGI-AVPKPSLQLDASPDWQVQ--GSVEPL-MPGRQAKGQVTITVPAGT---TP 75 (103)
T ss_dssp EECCCEEECT---TCEEEEEEEEECCSSS-CBSSCEEEEECCTTSEEE--EEECCB-CTTCEEEEEEEEECCTTC---CC
T ss_pred ccCcceeeCC---CCeEEEEEEEEeCCCC-ceeeeeEEEcCCCCcccc--Ccceee-CCCCcEEEEEEEECCCCC---CC
Confidence 4456666643 4689999999999987 544 46777889997664 555566 689999999999998753 33
Q ss_pred CceEEEEEEEcCCeEEEEEEEEE
Q 045236 573 PQQSGSIEWSDGVHLVRSPIAVR 595 (604)
Q Consensus 573 ~~~~G~l~~~~~~~~v~~P~~~~ 595 (604)
+.|.=.++.+.+.......+-+.
T Consensus 76 G~Y~i~~~a~~~~~~~s~t~tvt 98 (103)
T d1w8oa1 76 GRYRVGATLRTSAGNASTTFTVT 98 (103)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEE
T ss_pred ceEEEEEEEEeCCcceEEEEEEE
Confidence 44444555566655555554443
|