Citrus Sinensis ID: 045240

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-
MKCSRNIELMNNQALELVKCLWKEINRQQDVDVAEVIRKPTNLLLDAAEVGNFRFLAELIGSYPDFVHELDENGRSIFHIAILNRHMNVFNLIYEQGFNKQLLATYLDSCGNNILHLAAKYRSPSPYRTVSGAALEMQRELLIYKEVEMIVQPSYREMKNYDGKTPRELFTVEHLELLRRDEQWMKNRASSSIIVATLVATMAFAAAFIVPGGKDDKTGLPIHLRENWFQVFAISDAIAFSCSVISVAFFLSILTSQFAEDDFLRSLPLKLLGGLSVLFVSIVFVLVAFFSTLFLAYDHGVNWIVVPSGLVSFVPTVVIALLQVPVLKDIFCSTCCPSLAM
ccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccHHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
cHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHEEcccccccHHHHHHHHcHHHHHHHHHHHccHHHHHcccccccEEEEEEHccHHHHHHHHHHccHHHHHHHHHHccccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHccccHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
MKCSRNIELMNNQALELVKCLWKEINRQQDVDVAEVIRKPTNLLLDAAEVGNFRFLAELIGSYPDFVHELDENGRSIFHIAILNRHMNVFNLIYEQGFNKQLLATYLDSCGNNILHLAakyrspspyrtvsGAALEMQRELLIYKEVEMIVQpsyremknydgktprelfTVEHLELLRRDEQWMKNRASSSIIVATLVATMAFAAAFivpggkddktglpihlreNWFQVFAISDAIAFSCSVISVAFFLSILTSQFAEDDFLRSLPLKLLGGLSVLFVSIVFVLVAFFSTLFLAYDHGVNWIVVPSGLVSFVPTVVIALLqvpvlkdifcstccpslam
mkcsrnielmnnQALELVKCLWKEINRQQDVDVAEVIRKPTNLLLDAAEVGNFRFLAELIGSYPDFVHELDENGRSIFHIAILNRHMNVFNLIYEQGFNKQLLATYLDSCGNNILHLAakyrspspyRTVSGAALEMQRELLIYKEVEMIVQPSyremknydgktprELFTVEHLELLRRDEQWMKNRASSSIIVATLVATMAFAAAFIVPGGKDDKTGLPIHLRENWFQVFAISDAIAFSCSVISVAFFLSILTSQFAEDDFLRSLPLKLLGGLSVLFVSIVFVLVAFFSTLFLAYDHGVNWIVVPSGLVSFVPTVVIALLQVPVLKDIFCSTCCPSLAM
MKCSRNIELMNNQALELVKCLWKEINRQQDVDVAEVIRKPTNLLLDAAEVGNFRFLAELIGSYPDFVHELDENGRSIFHIAILNRHMNVFNLIYEQGFNKQLLATYLDSCGNNILHLAAKYRSPSPYRTVSGAALEMQRELLIYKEVEMIVQPSYREMKNYDGKTPRELFTVEHLELLRRDEQWMKNRASSSIIvatlvatmafaaafIVPGGKDDKTGLPIHLRENWFQVFAISDAIAFSCSVISVAFFLSILTSQFAEDDflrslplkllgglsvlfvsivfvlvaffsTLFLAYDHGVNWIVVPSGLVSFVPTVVIALLQVPVLKDIFCSTCCPSLAM
********LMNNQALELVKCLWKEINRQQDVDVAEVIRKPTNLLLDAAEVGNFRFLAELIGSYPDFVHELDENGRSIFHIAILNRHMNVFNLIYEQGFNKQLLATYLDSCGNNILHLAAKYRSPSPYRTVSGAALEMQRELLIYKEVEMIVQPSYREMKNYDGKTPRELFTVEHLELLRRDEQWMKNRASSSIIVATLVATMAFAAAFIVPGGKDDKTGLPIHLRENWFQVFAISDAIAFSCSVISVAFFLSILTSQFAEDDFLRSLPLKLLGGLSVLFVSIVFVLVAFFSTLFLAYDHGVNWIVVPSGLVSFVPTVVIALLQVPVLKDIFCSTCCP****
*****N*ELMNNQALELVKCLWKEINRQ*********RKPTNLLLDAAEVGNFRFLAELIGSYPDFVHELDENGRSIFHIAILNRHMNVFNLIYEQGFNKQLLATYLDSCGNNILHLAAKYRSPSPYRTVSGAALEMQRELLIYKEVEMIVQPSYREMKNYDGKTPRELFTVEHLELLRRDEQWMKNRASSSIIVATLVATMAFAAAFIVPGGKDDKTGLPIHLRENWFQVFAISDAIAFSCSVISVAFFLSILTSQFAEDDFLRSLPLKLLGGLSVLFVSIVFVLVAFFSTLFLAYDHGVNWIVVPSGLVSFVPTVVIALLQVPVLKDIFCSTCCPSL**
MKCSRNIELMNNQALELVKCLWKEINRQQDVDVAEVIRKPTNLLLDAAEVGNFRFLAELIGSYPDFVHELDENGRSIFHIAILNRHMNVFNLIYEQGFNKQLLATYLDSCGNNILHLAAKYRSPSPYRTVSGAALEMQRELLIYKEVEMIVQPSYREMKNYDGKTPRELFTVEHLELLRRDEQWMKNRASSSIIVATLVATMAFAAAFIVPGGKDDKTGLPIHLRENWFQVFAISDAIAFSCSVISVAFFLSILTSQFAEDDFLRSLPLKLLGGLSVLFVSIVFVLVAFFSTLFLAYDHGVNWIVVPSGLVSFVPTVVIALLQVPVLKDIFCSTCCPSLAM
MKCSRNIELMNNQALELVKCLWKEINRQQDVDVAEVIRKPTNLLLDAAEVGNFRFLAELIGSYPDFVHELDENGRSIFHIAILNRHMNVFNLIYEQGFNKQLLATYLDSCGNNILHLAAKYRSPSPYRTVSGAALEMQRELLIYKEVEMIVQPSYREMKNYDGKTPRELFTVEHLELLRRDEQWMKNRASSSIIVATLVATMAFAAAFIVPGGKDDKTGLPIHLRENWFQVFAISDAIAFSCSVISVAFFLSILTSQFAEDDFLRSLPLKLLGGLSVLFVSIVFVLVAFFSTLFLAYDHGVNWIVVPSGLVSFVPTVVIALLQVPVLKDIFCSTCCPSLA*
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MKCSRNIELMNNQALELVKCLWKEINRQQDVDVAEVIRKPTNLLLDAAEVGNFRFLAELIGSYPDFVHELDENGRSIFHIAILNRHMNVFNLIYEQGFNKQLLATYLDSCGNNILHLAAKYRSPSPYRTVSGAALEMQRELLIYKEVEMIVQPSYREMKNYDGKTPRELFTVEHLELLRRDEQWMKNRASSSIIVATLVATMAFAAAFIVPGGKDDKTGLPIHLRENWFQVFAISDAIAFSCSVISVAFFLSILTSQFAEDDFLRSLPLKLLGGLSVLFVSIVFVLVAFFSTLFLAYDHGVNWIVVPSGLVSFVPTVVIALLQVPVLKDIFCSTCCPSLAM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query341 2.2.26 [Sep-21-2011]
Q6AWW5524 Ankyrin repeat-containing no no 0.557 0.362 0.245 3e-05
Q9C7A2590 Ankyrin repeat-containing no no 0.777 0.449 0.211 7e-05
Q5U312 978 Ankycorbin OS=Rattus norv yes no 0.240 0.083 0.302 0.0004
Q9EP71 979 Ankycorbin OS=Mus musculu yes no 0.258 0.089 0.293 0.0005
Q9ZU96532 Ankyrin repeat-containing no no 0.853 0.546 0.205 0.0007
>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1 Back     alignment and function desciption
 Score = 50.1 bits (118), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 104/240 (43%), Gaps = 50/240 (20%)

Query: 29  QDVDVAEVIRKPTNLLL-DAAEVGNFRFLAELIGSYPDFVHELDENGRSIFHIAILNRHM 87
           + VD+A + R      L  AA  G+   + +LI      V  +D+ G++  H+A+  ++ 
Sbjct: 147 KGVDLAAIARSNGKTALHSAARNGHTVIVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNT 206

Query: 88  NVFNLIYEQGFNKQLLATYLDSCGNNILHLAAKYRSPSPYRTV-------------SG-A 133
            + +++ E   +   L    D+ GN  LH+A +       +TV             SG  
Sbjct: 207 EIVDVLMEADGS---LINSADNKGNTPLHIAVRKNRAEIVQTVLKYCEVSRVAVNKSGET 263

Query: 134 ALEMQRELLIYKEVEMI----------------VQPS--YREMKNYDGKTPRELFT-VEH 174
           AL++  +  +++ V ++                V+PS   R++K    +   E+ T +E 
Sbjct: 264 ALDIAEKTGLHEIVPLLQKIGMQNARSIKPAEKVEPSGSSRKLKETVSEIGHEVHTQLEQ 323

Query: 175 LELLRRDEQWMKNRAS------------SSIIVATLVATMAFAAAFIVPGG-KDDKTGLP 221
               RR+ Q +  R +            S+ +VA L+AT+AFAA F VPG   DD   +P
Sbjct: 324 TGRTRREIQGIAKRVNKMHTEGLNNAINSTTLVAILIATVAFAAIFNVPGQYTDDPKDVP 383

Arabidopsis thaliana (taxid: 3702)
>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1 Back     alignment and function description
>sp|Q5U312|RAI14_RAT Ankycorbin OS=Rattus norvegicus GN=Rai14 PE=2 SV=2 Back     alignment and function description
>sp|Q9EP71|RAI14_MOUSE Ankycorbin OS=Mus musculus GN=Rai14 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query341
297740805 702 unnamed protein product [Vitis vinifera] 0.979 0.475 0.5 6e-88
359483665 762 PREDICTED: ankyrin repeat-containing pro 0.979 0.438 0.5 7e-88
225425076 563 PREDICTED: ankyrin repeat-containing pro 0.853 0.516 0.549 1e-82
359472754 789 PREDICTED: ankyrin repeat-containing pro 0.947 0.409 0.490 1e-82
297737987 1855 unnamed protein product [Vitis vinifera] 0.947 0.174 0.490 5e-82
147784800 1697 hypothetical protein VITISV_029434 [Viti 0.947 0.190 0.490 9e-82
359473665 602 PREDICTED: LOW QUALITY PROTEIN: ankyrin 0.970 0.549 0.469 1e-80
224136692 743 predicted protein [Populus trichocarpa] 0.979 0.449 0.467 4e-79
147860696 891 hypothetical protein VITISV_011174 [Viti 0.879 0.336 0.495 4e-77
356532648 739 PREDICTED: uncharacterized protein LOC10 0.953 0.439 0.478 5e-77
>gi|297740805|emb|CBI30987.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  330 bits (846), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 167/334 (50%), Positives = 230/334 (68%)

Query: 1   MKCSRNIELMNNQALELVKCLWKEINRQQDVDVAEVIRKPTNLLLDAAEVGNFRFLAELI 60
           +K   + +LM+ QALELVKCLW E+    ++ V E+IR P+ LL  AAE+G   FL ELI
Sbjct: 331 IKVVYDQKLMHIQALELVKCLWSEVLLMNELQVGELIRTPSRLLFTAAELGIVEFLIELI 390

Query: 61  GSYPDFVHELDENGRSIFHIAILNRHMNVFNLIYEQGFNKQLLATYLDSCGNNILHLAAK 120
            +YPD + ++D   RSIFHIA+++R   VFNLI+E G  K L+A+Y D   NN+LHLA K
Sbjct: 391 HAYPDLIWKVDTQSRSIFHIAVVHRQEKVFNLIHEIGALKDLIASYRDENNNNMLHLAGK 450

Query: 121 YRSPSPYRTVSGAALEMQRELLIYKEVEMIVQPSYREMKNYDGKTPRELFTVEHLELLRR 180
                  +T SGAAL+++REL  +KEVE IVQP YRE++N +GKTP+ LF  EH  L+R 
Sbjct: 451 LAPSDRLKTDSGAALQLRRELHWFKEVEKIVQPLYREIRNSEGKTPQTLFMEEHKVLVRE 510

Query: 181 DEQWMKNRASSSIIVATLVATMAFAAAFIVPGGKDDKTGLPIHLRENWFQVFAISDAIAF 240
            E+WMK+ A+S ++VATL+AT+ FAA F VPGG +  TG+PI L+   F VFA+SDA++F
Sbjct: 511 GEKWMKDTAASCMLVATLIATVMFAAFFTVPGGDNGNTGIPIFLKRRSFTVFAVSDALSF 570

Query: 241 SCSVISVAFFLSILTSQFAEDDFLRSLPLKLLGGLSVLFVSIVFVLVAFFSTLFLAYDHG 300
             S  S+  FLSILTS++AE+DFL SLP +L  GL  LF+S+  +++AF +TLFL   HG
Sbjct: 571 VSSAASILMFLSILTSRYAEEDFLHSLPNRLTIGLGTLFISVATMMIAFCATLFLVLGHG 630

Query: 301 VNWIVVPSGLVSFVPTVVIALLQVPVLKDIFCST 334
           ++   +P  LV+ +P  + ALLQ P+  D+   T
Sbjct: 631 LHQAKIPIALVACIPVSLFALLQFPLFADMVSCT 664

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359483665|ref|XP_003632996.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225425076|ref|XP_002271486.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359472754|ref|XP_002276402.2| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297737987|emb|CBI27188.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147784800|emb|CAN68568.1| hypothetical protein VITISV_029434 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359473665|ref|XP_003631341.1| PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224136692|ref|XP_002322392.1| predicted protein [Populus trichocarpa] gi|222869388|gb|EEF06519.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147860696|emb|CAN81449.1| hypothetical protein VITISV_011174 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356532648|ref|XP_003534883.1| PREDICTED: uncharacterized protein LOC100814269 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query341
TAIR|locus:2165174347 AT5G35810 "AT5G35810" [Arabido 0.870 0.855 0.363 1.2e-44
TAIR|locus:2080240574 AT3G54070 "AT3G54070" [Arabido 0.736 0.437 0.362 3.7e-39
TAIR|locus:2175413669 AT5G04700 "AT5G04700" [Arabido 0.853 0.434 0.341 5.3e-36
TAIR|locus:2175448603 AT5G04730 "AT5G04730" [Arabido 0.967 0.547 0.313 1e-35
TAIR|locus:2180228625 AT5G04690 "AT5G04690" [Arabido 0.932 0.508 0.316 7.8e-34
TAIR|locus:2128781677 AT4G03460 "AT4G03460" [Arabido 0.228 0.115 0.3 0.00081
TAIR|locus:2165174 AT5G35810 "AT5G35810" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 110/303 (36%), Positives = 153/303 (50%)

Query:    10 MNNQALELVKCLWKEINRQQDVDVAEVIRKPTNLLLDAAEVGNFRFLAELIGSYPDFVHE 69
             M   A  +V+ LW  + +    ++++ +     LL DAA+ GN   L  LI SYPD +  
Sbjct:     1 MRTLAHMVVEELWSFVIKLPVEEISQFVGSSPMLLFDAAQSGNLELLLILIRSYPDLIWT 60

Query:    70 LDENGRSIFHIAILNRHMNVFNLIYEQGFNKQLLATYLDSCGN-NILHLAAKYRSPSPYR 128
             +D   +S+FHIA +NRH  +FN IYE G  K L+A Y +   N N+LHL A+   P+  +
Sbjct:    61 VDHKNQSLFHIAAINRHEKIFNRIYELGAIKDLIAMYKEKESNDNLLHLVARLPPPNRLQ 120

Query:   129 TVSGAALEMQRELLIYKEVEMIVQPSYREMKNYDGKTPRELFTVEHLELLRRDEQWMKNR 188
              VSGAAL+MQRE+L YK V+ IV   Y + KN   +   +LFT EH  L +  E+WMK  
Sbjct:   121 VVSGAALQMQREILWYKAVKEIVPRVYIKTKNKKEEVAHDLFTKEHDNLRKEGEKWMKET 180

Query:   189 ASSSIIXXXXXXXXXXXXXXIVPGGKDD----KT-GLPIHLRENWFQVFAISDAIAFSCS 243
             A++ I+               +PGG D     KT G P   +E WF+VF ISD++A   S
Sbjct:   181 ATACILVSTLIATVVFAAAFTLPGGNDTSGDIKTLGFPTFRKEFWFEVFIISDSVALLSS 240

Query:   244 VISVAFFLSILTSQFAEDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLFLAYDHGVNW 303
             V S+  FLSILTS++AE                               TL L  D    W
Sbjct:   241 VTSIMIFLSILTSRYAEASFQTTLPTKLMLGLLALFVSIISMVLAFTATLILIRDQEPKW 300

Query:   304 IVV 306
              ++
Sbjct:   301 SLI 303
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2080240 AT3G54070 "AT3G54070" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175413 AT5G04700 "AT5G04700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175448 AT5G04730 "AT5G04730" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180228 AT5G04690 "AT5G04690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00030147001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (366 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query341
pfam13962114 pfam13962, PGG, Domain of unknown function 8e-24
cd00204126 cd00204, ANK, ankyrin repeats; ankyrin repeats med 6e-06
cd00204126 cd00204, ANK, ankyrin repeats; ankyrin repeats med 4e-05
cd00204126 cd00204, ANK, ankyrin repeats; ankyrin repeats med 6e-04
pfam1279691 pfam12796, Ank_2, Ankyrin repeats (3 copies) 0.002
pfam1279691 pfam12796, Ank_2, Ankyrin repeats (3 copies) 0.002
>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function Back     alignment and domain information 
 Score = 93.7 bits (234), Expect = 8e-24
 Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 182 EQWMKNRASSSIIVATLVATMAFAAAFIVPGG-----KDDKTGLPIHL-RENWFQVFAIS 235
            +W++   +S ++VATL+AT+ FAA F  PGG          G PI   +   F+ F +S
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVS 60

Query: 236 DAIAFSCSVISVAFFLSILTSQFAEDDFLRSLPLKLLGGLSVLFVSIVFVLVAFFSTLFL 295
           + IAF  S+++V   L I+        F R LP +LL  L++L++S++ ++VAF +  + 
Sbjct: 61  NTIAFVASLVAVILLLYIV------PSFSRRLP-RLLALLTLLWLSLLSLMVAFAAGSYR 113

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins Back     alignment and domain information
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins Back     alignment and domain information
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins Back     alignment and domain information
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies) Back     alignment and domain information
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 341
KOG4412226 consensus 26S proteasome regulatory complex, subun 99.93
PF13962113 PGG: Domain of unknown function 99.93
KOG0509 600 consensus Ankyrin repeat and DHHC-type Zn-finger d 99.88
PHA02791284 ankyrin-like protein; Provisional 99.87
KOG4412226 consensus 26S proteasome regulatory complex, subun 99.87
PHA02859209 ankyrin repeat protein; Provisional 99.84
PHA02791284 ankyrin-like protein; Provisional 99.84
PHA02874434 ankyrin repeat protein; Provisional 99.81
PHA02874434 ankyrin repeat protein; Provisional 99.81
PHA02946446 ankyin-like protein; Provisional 99.8
PHA02875413 ankyrin repeat protein; Provisional 99.8
PHA02875413 ankyrin repeat protein; Provisional 99.8
PHA02878477 ankyrin repeat protein; Provisional 99.8
PHA02878477 ankyrin repeat protein; Provisional 99.8
KOG0510 929 consensus Ankyrin repeat protein [General function 99.8
PHA02946446 ankyin-like protein; Provisional 99.79
KOG0509 600 consensus Ankyrin repeat and DHHC-type Zn-finger d 99.79
PHA03100480 ankyrin repeat protein; Provisional 99.79
PHA02716 764 CPXV016; CPX019; EVM010; Provisional 99.79
KOG0510 929 consensus Ankyrin repeat protein [General function 99.78
PHA03100480 ankyrin repeat protein; Provisional 99.78
KOG0195 448 consensus Integrin-linked kinase [Signal transduct 99.78
PHA02741169 hypothetical protein; Provisional 99.78
PHA02989494 ankyrin repeat protein; Provisional 99.76
PHA02859209 ankyrin repeat protein; Provisional 99.76
PHA03095471 ankyrin-like protein; Provisional 99.75
PHA02798489 ankyrin-like protein; Provisional 99.75
PHA02876682 ankyrin repeat protein; Provisional 99.75
PHA02795437 ankyrin-like protein; Provisional 99.75
PHA02743166 Viral ankyrin protein; Provisional 99.75
PHA03095471 ankyrin-like protein; Provisional 99.75
KOG0512228 consensus Fetal globin-inducing factor (contains a 99.74
PHA02716764 CPXV016; CPX019; EVM010; Provisional 99.73
PHA02741169 hypothetical protein; Provisional 99.73
PLN03192823 Voltage-dependent potassium channel; Provisional 99.73
KOG0508 615 consensus Ankyrin repeat protein [General function 99.72
PHA02876682 ankyrin repeat protein; Provisional 99.72
PHA02736154 Viral ankyrin protein; Provisional 99.72
PLN03192823 Voltage-dependent potassium channel; Provisional 99.71
PHA02743166 Viral ankyrin protein; Provisional 99.7
PHA02884300 ankyrin repeat protein; Provisional 99.7
PHA02917 661 ankyrin-like protein; Provisional 99.7
PHA02989494 ankyrin repeat protein; Provisional 99.7
PHA02736154 Viral ankyrin protein; Provisional 99.69
PHA02884300 ankyrin repeat protein; Provisional 99.69
KOG0512228 consensus Fetal globin-inducing factor (contains a 99.67
KOG4177 1143 consensus Ankyrin [Cell wall/membrane/envelope bio 99.66
PHA02798 489 ankyrin-like protein; Provisional 99.65
PHA02730 672 ankyrin-like protein; Provisional 99.63
KOG3676 782 consensus Ca2+-permeable cation channel OSM-9 and 99.62
KOG0514452 consensus Ankyrin repeat protein [General function 99.62
TIGR00870 743 trp transient-receptor-potential calcium channel p 99.62
PF1279689 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02 99.62
PHA02795437 ankyrin-like protein; Provisional 99.61
PHA02730672 ankyrin-like protein; Provisional 99.61
KOG0505527 consensus Myosin phosphatase, regulatory subunit [ 99.61
KOG0507 854 consensus CASK-interacting adaptor protein (caskin 99.6
KOG0508 615 consensus Ankyrin repeat protein [General function 99.57
KOG0502296 consensus Integral membrane ankyrin-repeat protein 99.56
KOG4177 1143 consensus Ankyrin [Cell wall/membrane/envelope bio 99.56
PHA02917 661 ankyrin-like protein; Provisional 99.55
TIGR00870 743 trp transient-receptor-potential calcium channel p 99.55
cd00204126 ANK ankyrin repeats; ankyrin repeats mediate prote 99.52
PF1279689 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02 99.52
KOG0502296 consensus Integral membrane ankyrin-repeat protein 99.49
PHA02792631 ankyrin-like protein; Provisional 99.47
PF1385756 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 99.45
PF1363754 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 99.45
KOG0195448 consensus Integrin-linked kinase [Signal transduct 99.44
cd00204126 ANK ankyrin repeats; ankyrin repeats mediate prote 99.43
KOG0514452 consensus Ankyrin repeat protein [General function 99.42
KOG0507 854 consensus CASK-interacting adaptor protein (caskin 99.4
PHA02792 631 ankyrin-like protein; Provisional 99.38
KOG4214117 consensus Myotrophin and similar proteins [Transcr 99.35
PTZ00322 664 6-phosphofructo-2-kinase/fructose-2,6-biphosphatas 99.34
KOG0505 527 consensus Myosin phosphatase, regulatory subunit [ 99.32
COG0666235 Arp FOG: Ankyrin repeat [General function predicti 99.32
KOG4214117 consensus Myotrophin and similar proteins [Transcr 99.27
COG0666235 Arp FOG: Ankyrin repeat [General function predicti 99.27
PF1363754 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 99.25
PF1385756 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 99.24
KOG3676 782 consensus Ca2+-permeable cation channel OSM-9 and 99.22
PTZ00322 664 6-phosphofructo-2-kinase/fructose-2,6-biphosphatas 99.12
KOG1710396 consensus MYND Zn-finger and ankyrin repeat protei 99.1
KOG0515752 consensus p53-interacting protein 53BP/ASPP, conta 99.1
KOG0515752 consensus p53-interacting protein 53BP/ASPP, conta 99.04
KOG1710 396 consensus MYND Zn-finger and ankyrin repeat protei 99.03
KOG4369 2131 consensus RTK signaling protein MASK/UNC-44 [Signa 98.94
KOG4369 2131 consensus RTK signaling protein MASK/UNC-44 [Signa 98.75
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.69
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.56
PF1360630 Ank_3: Ankyrin repeat 98.54
KOG0506622 consensus Glutaminase (contains ankyrin repeat) [A 98.53
PF1360630 Ank_3: Ankyrin repeat 98.49
PF0002333 Ank: Ankyrin repeat Hereditary spherocytosis; Inte 98.46
PF0002333 Ank: Ankyrin repeat Hereditary spherocytosis; Inte 98.44
KOG0522 560 consensus Ankyrin repeat protein [General function 98.43
KOG0818 669 consensus GTPase-activating proteins of the GIT fa 98.4
KOG07821004 consensus Predicted diacylglycerol kinase [Signal 98.4
KOG07821004 consensus Predicted diacylglycerol kinase [Signal 98.35
KOG0705749 consensus GTPase-activating protein Centaurin gamm 98.34
KOG0818 669 consensus GTPase-activating proteins of the GIT fa 98.33
KOG0520975 consensus Uncharacterized conserved protein, conta 98.28
KOG0522 560 consensus Ankyrin repeat protein [General function 98.27
KOG0705749 consensus GTPase-activating protein Centaurin gamm 98.12
KOG0521785 consensus Putative GTPase activating proteins (GAP 98.11
KOG0506622 consensus Glutaminase (contains ankyrin repeat) [A 98.02
KOG2384223 consensus Major histocompatibility complex protein 97.71
KOG0521785 consensus Putative GTPase activating proteins (GAP 97.63
KOG0511 516 consensus Ankyrin repeat protein [General function 97.63
KOG0520 975 consensus Uncharacterized conserved protein, conta 97.51
KOG2384223 consensus Major histocompatibility complex protein 97.11
KOG3609 822 consensus Receptor-activated Ca2+-permeable cation 96.95
smart0024830 ANK ankyrin repeats. Ankyrin repeats are about 33 96.44
smart0024830 ANK ankyrin repeats. Ankyrin repeats are about 33 96.41
KOG2505591 consensus Ankyrin repeat protein [General function 95.49
KOG2505591 consensus Ankyrin repeat protein [General function 95.41
KOG3609 822 consensus Receptor-activated Ca2+-permeable cation 94.73
KOG0511 516 consensus Ankyrin repeat protein [General function 94.56
PF1192976 DUF3447: Domain of unknown function (DUF3447); Int 83.72
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=99.93  E-value=4.9e-27  Score=189.46  Aligned_cols=142  Identities=21%  Similarity=0.166  Sum_probs=112.3

Q ss_pred             HHHhhhhHHH----HHHHHHHHHHHhcCChhhHHHHhcCCChHHHHHHHcCcHHHHHHHHHh-CCcccccccccCCcHHH
Q 045240            5 RNIELMNNQA----LELVKCLWKEINRQQDVDVAEVIRKPTNLLLDAAEVGNFRFLAELIGS-YPDFVHELDENGRSIFH   79 (341)
Q Consensus         5 ~~~~~lh~aa----~~~v~~Ll~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~-~~~~~~~~d~~G~t~LH   79 (341)
                      .+|+++|+++    .+++++|++ -.+++.   .+.|+.|+||||+||..|+.|+|+.|+.+ ++| ++..++.|+|+||
T Consensus        37 D~Rt~LHwa~S~g~~eiv~fLls-q~nv~~---ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~ad-vna~tn~G~T~LH  111 (226)
T KOG4412|consen   37 DGRTPLHWACSFGHVEIVYFLLS-QPNVKP---DDKDDAGWTPLHIAASNGNDEVVKELLNRSGAD-VNATTNGGQTCLH  111 (226)
T ss_pred             cCCceeeeeeecCchhHHHHHHh-cCCCCC---CCccccCCchhhhhhhcCcHHHHHHHhcCCCCC-cceecCCCcceeh
Confidence            4678899886    678888886 222222   22467899999999999999999999988 777 6888999999999


Q ss_pred             HHHHcCChhHHHHHHhcCCcccchhhcccCCCCcHHHHHHHhCCCCCcccccccHHhhHHHhhhHHHHHHhhCCcchhcc
Q 045240           80 IAILNRHMNVFNLIYEQGFNKQLLATYLDSCGNNILHLAAKYRSPSPYRTVSGAALEMQRELLIYKEVEMIVQPSYREMK  159 (341)
Q Consensus        80 ~Aa~~g~~~iv~~Ll~~~~~~~~l~n~~d~~G~TpLH~Aa~~~~~~~v~~L~~~~l~~~~~l~~~~~v~~l~~~~~~~~~  159 (341)
                      +|+-.|+.+++++|++.|+..    +.+|..|.||||-|+..|..+++++|                   +-.++.+|.+
T Consensus       112 yAagK~r~eIaqlLle~ga~i----~~kD~~~qtplHRAAavGklkvie~L-------------------i~~~a~~n~q  168 (226)
T KOG4412|consen  112 YAAGKGRLEIAQLLLEKGALI----RIKDKQGQTPLHRAAAVGKLKVIEYL-------------------ISQGAPLNTQ  168 (226)
T ss_pred             hhhcCChhhHHHHHHhcCCCC----cccccccCchhHHHHhccchhhHHHH-------------------HhcCCCCCcc
Confidence            999999999999999998754    44899999999999998887765554                   1256778899


Q ss_pred             cCCCCChhHHH-HHHH
Q 045240          160 NYDGKTPRELF-TVEH  174 (341)
Q Consensus       160 n~~G~Tpl~la-~~~~  174 (341)
                      |++|.|||+.| ++.|
T Consensus       169 Dk~G~TpL~~al~e~~  184 (226)
T KOG4412|consen  169 DKYGFTPLHHALAEGH  184 (226)
T ss_pred             cccCccHHHHHHhccC
Confidence            99999999988 4443

>PF13962 PGG: Domain of unknown function Back     alignment and domain information
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only] Back     alignment and domain information
>PHA02791 ankyrin-like protein; Provisional Back     alignment and domain information
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02859 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02791 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02874 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02874 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02946 ankyin-like protein; Provisional Back     alignment and domain information
>PHA02875 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02875 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02878 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02878 ankyrin repeat protein; Provisional Back     alignment and domain information
>KOG0510 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PHA02946 ankyin-like protein; Provisional Back     alignment and domain information
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only] Back     alignment and domain information
>PHA03100 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02716 CPXV016; CPX019; EVM010; Provisional Back     alignment and domain information
>KOG0510 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PHA03100 ankyrin repeat protein; Provisional Back     alignment and domain information
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] Back     alignment and domain information
>PHA02741 hypothetical protein; Provisional Back     alignment and domain information
>PHA02989 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02859 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA03095 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02798 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02876 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02795 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02743 Viral ankyrin protein; Provisional Back     alignment and domain information
>PHA03095 ankyrin-like protein; Provisional Back     alignment and domain information
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription] Back     alignment and domain information
>PHA02716 CPXV016; CPX019; EVM010; Provisional Back     alignment and domain information
>PHA02741 hypothetical protein; Provisional Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>KOG0508 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PHA02876 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02736 Viral ankyrin protein; Provisional Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>PHA02743 Viral ankyrin protein; Provisional Back     alignment and domain information
>PHA02884 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02917 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02989 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02736 Viral ankyrin protein; Provisional Back     alignment and domain information
>PHA02884 ankyrin repeat protein; Provisional Back     alignment and domain information
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription] Back     alignment and domain information
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>PHA02798 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02730 ankyrin-like protein; Provisional Back     alignment and domain information
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG0514 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>TIGR00870 trp transient-receptor-potential calcium channel protein Back     alignment and domain information
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain Back     alignment and domain information
>PHA02795 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02730 ankyrin-like protein; Provisional Back     alignment and domain information
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG0508 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only] Back     alignment and domain information
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>PHA02917 ankyrin-like protein; Provisional Back     alignment and domain information
>TIGR00870 trp transient-receptor-potential calcium channel protein Back     alignment and domain information
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins Back     alignment and domain information
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain Back     alignment and domain information
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only] Back     alignment and domain information
>PHA02792 ankyrin-like protein; Provisional Back     alignment and domain information
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A Back     alignment and domain information
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A Back     alignment and domain information
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] Back     alignment and domain information
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins Back     alignment and domain information
>KOG0514 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms] Back     alignment and domain information
>PHA02792 ankyrin-like protein; Provisional Back     alignment and domain information
>KOG4214 consensus Myotrophin and similar proteins [Transcription] Back     alignment and domain information
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional Back     alignment and domain information
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only] Back     alignment and domain information
>KOG4214 consensus Myotrophin and similar proteins [Transcription] Back     alignment and domain information
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only] Back     alignment and domain information
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A Back     alignment and domain information
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A Back     alignment and domain information
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional Back     alignment and domain information
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms] Back     alignment and domain information
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>PF13606 Ank_3: Ankyrin repeat Back     alignment and domain information
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism] Back     alignment and domain information
>PF13606 Ank_3: Ankyrin repeat Back     alignment and domain information
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature Back     alignment and domain information
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature Back     alignment and domain information
>KOG0522 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] Back     alignment and domain information
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] Back     alignment and domain information
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] Back     alignment and domain information
>KOG0522 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] Back     alignment and domain information
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only] Back     alignment and domain information
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>smart00248 ANK ankyrin repeats Back     alignment and domain information
>smart00248 ANK ankyrin repeats Back     alignment and domain information
>KOG2505 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG2505 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query341
4gmr_A169 Crystal Structure Of Engineered Protein. Northeast 1e-04
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169 Back     alignment and structure 
Iteration: 1

 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 25/162 (15%)
Query: 44  LLDAAEVGNFRFLAELIGSYPDFVHELDENGRSIFHIAILNRHMNVFNLIYEQGFNKQLL 103
           L++AAE GN   + +L+ +  D V+  D +G++  H+A  N H  V  L+  QG +    
Sbjct: 8   LIEAAENGNKDRVKDLLENGAD-VNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD---- 62
Query: 104 ATYLDSCGNNILHLAA-------------KYRSPSPYRTVSGAALEMQRELLIYKEVE-- 148
               DS G   LHLAA             +   P+   +     L +  E   +KEV   
Sbjct: 63  PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAE-NGHKEVVKL 121
Query: 149 MIVQPSYREMKNYDGKTP----RELFTVEHLELLRRDEQWMK 186
           ++ Q +     + DG+TP    RE    E ++LL +   W++
Sbjct: 122 LLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query341
3jxi_A260 Vanilloid receptor-related osmotically activated p 7e-05
1ikn_D236 Protein (I-kappa-B-alpha), protein (NF-kappa-B P50 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
2rfa_A232 Transient receptor potential cation channel subfa 2e-04
2dzn_A228 Probable 26S proteasome regulatory subunit P28; an 2e-04
2etb_A256 Transient receptor potential cation channel subfam 5e-04
2pnn_A273 Transient receptor potential cation channel subfa 5e-04
1s70_B299 130 kDa myosin-binding subunit of smooth muscle my 7e-04
3utm_A351 Tankyrase-1; tankyrase, TNKS, ankryin repeat clust 7e-04
2fo1_E373 LIN-12 protein; beta-barrel, protein-DNA complex, 7e-04
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260 Back     alignment and structure
 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 14/108 (12%)

Query: 64  PDFVHELDENGRSIFHIAILNRHMNVFNLIYEQGF-----NKQLLATYLDSCGNNILHLA 118
           P         G     +A      ++ + + E G       +Q      DS GN +LH  
Sbjct: 130 PKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQ------DSRGNTVLHAL 183

Query: 119 AKYRSPSPYRTVSGAALEMQRELLIYKEVEMIVQPSYREMKNYDGKTP 166
                 +  R  +    +M  +LL+ K  ++    +   + N DG +P
Sbjct: 184 VAIADNT--RENTKFVTKM-YDLLLIKCAKLFPDTNLEALLNNDGLSP 228
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232 Back     alignment and structure
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228 Back     alignment and structure
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256 Back     alignment and structure
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273 Back     alignment and structure
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299 Back     alignment and structure
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351 Back     alignment and structure
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query341
4gpm_A169 Engineered protein OR264; de novo protein, structu 99.92
3twr_A165 Tankyrase-2; ankyrin repeat, protein-protein inter 99.9
1oy3_D282 Transcription factor inhibitor I-kappa-B-beta; pro 99.9
1awc_B153 Protein (GA binding protein beta 1); complex (tran 99.89
2rfm_A192 Putative ankyrin repeat protein TV1425; ANK repeat 99.89
1yyh_A253 HN1;, notch 1, ankyrin domain; ankyrin repeats, ce 99.89
3aji_A231 26S proteasome non-ATPase regulatory subunit 10; g 99.89
4b93_B269 Ankyrin repeat domain-containing protein 27; endoc 99.89
3v31_A167 Ankyrin repeat family A protein 2; structural geno 99.89
1yyh_A253 HN1;, notch 1, ankyrin domain; ankyrin repeats, ce 99.89
2f8y_A223 Notch homolog 1, translocation-associated (drosoph 99.88
1oy3_D282 Transcription factor inhibitor I-kappa-B-beta; pro 99.88
2y1l_E169 Darpin-8.4; hydrolase-inhibitor complex, DEVD darp 99.88
3v30_A172 DNA-binding protein rfxank; structural genomics co 99.88
2dzn_A228 Probable 26S proteasome regulatory subunit P28; an 99.88
3utm_A351 Tankyrase-1; tankyrase, TNKS, ankryin repeat clust 99.88
2rfa_A232 Transient receptor potential cation channel subfa 99.88
3b7b_A237 Euchromatic histone-lysine N-methyltransferase 1; 99.88
2xai_A261 ASB-9, ankyrin repeat and SOCS box protein 9; tran 99.88
1s70_B299 130 kDa myosin-binding subunit of smooth muscle my 99.87
4gpm_A169 Engineered protein OR264; de novo protein, structu 99.87
3f6q_A179 Integrin-linked protein kinase; ILK, integrin-link 99.87
3jxi_A260 Vanilloid receptor-related osmotically activated p 99.87
2etb_A256 Transient receptor potential cation channel subfam 99.87
3kea_A285 K1L; tropism, ANK repeat, viral protein; 2.30A {Va 99.87
2xai_A261 ASB-9, ankyrin repeat and SOCS box protein 9; tran 99.87
1k1a_A241 B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa 99.87
3aji_A231 26S proteasome non-ATPase regulatory subunit 10; g 99.87
1k1a_A241 B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa 99.87
3b7b_A237 Euchromatic histone-lysine N-methyltransferase 1; 99.87
1bd8_A156 P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr 99.86
3hra_A201 Ankyrin repeat family protein; structural protein; 99.86
1ihb_A162 P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit 99.86
2dzn_A228 Probable 26S proteasome regulatory subunit P28; an 99.86
3d9h_A285 CDNA FLJ77766, highly similar to HOMO sapiens anky 99.86
2pnn_A273 Transient receptor potential cation channel subfa 99.86
3c5r_A137 BARD-1, BRCA1-associated ring domain protein 1; an 99.86
2rfa_A232 Transient receptor potential cation channel subfa 99.86
3d9h_A285 CDNA FLJ77766, highly similar to HOMO sapiens anky 99.86
3ljn_A364 Hypothetical protein; ankyrin, structural genomics 99.86
2etb_A256 Transient receptor potential cation channel subfam 99.85
3jxi_A260 Vanilloid receptor-related osmotically activated p 99.85
3aaa_C123 Myotrophin, protein V-1; actin capping protein, ba 99.85
4hbd_A276 KN motif and ankyrin repeat domain-containing Pro; 99.85
1sw6_A327 Regulatory protein SWI6; transcription regulation, 99.85
1ycs_B239 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres 99.85
1n11_A437 Ankyrin; clathrin, BAND 3, anion exchanger, struct 99.85
4b93_B269 Ankyrin repeat domain-containing protein 27; endoc 99.84
1n11_A437 Ankyrin; clathrin, BAND 3, anion exchanger, struct 99.84
4g8k_A337 2-5A-dependent ribonuclease; ankyrin-repeat domain 99.84
1ikn_D236 Protein (I-kappa-B-alpha), protein (NF-kappa-B P50 99.84
1wdy_A285 2-5A-dependent ribonuclease; hydrolase, RNA-bindin 99.84
1bi7_B156 P16INK4A, MTS1, multiple tumor suppressor; cyclin 99.84
3utm_A351 Tankyrase-1; tankyrase, TNKS, ankryin repeat clust 99.84
3v30_A172 DNA-binding protein rfxank; structural genomics co 99.84
1d9s_A136 Cyclin-dependent kinase 4 inhibitor B; helix-turn- 99.84
3eu9_A240 Huntingtin-interacting protein 14; epigenetics, an 99.84
2jab_A136 H10-2-G3; HER2, darpin, ankyrin repeat protein, me 99.83
3t8k_A186 Uncharacterized protein; structural genomics, PSI- 99.83
2pnn_A273 Transient receptor potential cation channel subfa 99.83
2jab_A136 H10-2-G3; HER2, darpin, ankyrin repeat protein, me 99.83
2fo1_E373 LIN-12 protein; beta-barrel, protein-DNA complex, 99.83
3deo_A183 Signal recognition particle 43 kDa protein; chloro 99.82
1wdy_A285 2-5A-dependent ribonuclease; hydrolase, RNA-bindin 99.82
1n0r_A126 4ANK, 4 ankyrin repeats; structural protein; 1.50A 99.82
1d9s_A136 Cyclin-dependent kinase 4 inhibitor B; helix-turn- 99.81
2vge_A229 RELA-associated inhibitor; iaspp, nucleus, apoptos 99.81
1awc_B153 Protein (GA binding protein beta 1); complex (tran 99.81
2rfm_A192 Putative ankyrin repeat protein TV1425; ANK repeat 99.8
2f8y_A223 Notch homolog 1, translocation-associated (drosoph 99.8
3ehr_A222 Osteoclast-stimulating factor 1; beta barrel, heli 99.8
1ikn_D236 Protein (I-kappa-B-alpha), protein (NF-kappa-B P50 99.8
3c5r_A137 BARD-1, BRCA1-associated ring domain protein 1; an 99.8
1bi7_B156 P16INK4A, MTS1, multiple tumor suppressor; cyclin 99.8
3ui2_A244 Signal recognition particle 43 kDa protein, chlor; 99.8
2vge_A229 RELA-associated inhibitor; iaspp, nucleus, apoptos 99.8
1n0q_A93 3ANK, 3 ankyrin repeats; structural protein; 1.26A 99.8
3deo_A183 Signal recognition particle 43 kDa protein; chloro 99.8
3ljn_A364 Hypothetical protein; ankyrin, structural genomics 99.8
2l6b_A115 NR1C; ankyrin, consensus, repeat protein, ising mo 99.79
3v31_A167 Ankyrin repeat family A protein 2; structural geno 99.79
3aaa_C123 Myotrophin, protein V-1; actin capping protein, ba 99.79
3eu9_A240 Huntingtin-interacting protein 14; epigenetics, an 99.79
1n0r_A126 4ANK, 4 ankyrin repeats; structural protein; 1.50A 99.79
1bd8_A156 P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr 99.79
2fo1_E373 LIN-12 protein; beta-barrel, protein-DNA complex, 99.79
2y1l_E169 Darpin-8.4; hydrolase-inhibitor complex, DEVD darp 99.78
1ihb_A162 P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit 99.78
3hra_A201 Ankyrin repeat family protein; structural protein; 99.78
1s70_B299 130 kDa myosin-binding subunit of smooth muscle my 99.78
3twr_A165 Tankyrase-2; ankyrin repeat, protein-protein inter 99.78
1ycs_B239 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres 99.78
4hbd_A276 KN motif and ankyrin repeat domain-containing Pro; 99.78
1sw6_A327 Regulatory protein SWI6; transcription regulation, 99.77
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 99.77
3t8k_A186 Uncharacterized protein; structural genomics, PSI- 99.77
3f6q_A179 Integrin-linked protein kinase; ILK, integrin-link 99.77
3ehr_A222 Osteoclast-stimulating factor 1; beta barrel, heli 99.76
3ui2_A244 Signal recognition particle 43 kDa protein, chlor; 99.76
3kea_A285 K1L; tropism, ANK repeat, viral protein; 2.30A {Va 99.76
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 99.76
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 99.75
3lvq_E497 ARF-GAP with SH3 domain, ANK repeat and PH domain 99.74
2zgd_A110 3 repeat synthetic ankyrin; ankyrin repeat, hydrox 99.74
4g8k_A337 2-5A-dependent ribonuclease; ankyrin-repeat domain 99.73
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 99.69
1n0q_A93 3ANK, 3 ankyrin repeats; structural protein; 1.26A 99.68
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 99.68
2aja_A376 Ankyrin repeat family protein; NESG, Q5ZSV0, struc 99.68
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 99.67
3lvq_E497 ARF-GAP with SH3 domain, ANK repeat and PH domain 99.65
2l6b_A115 NR1C; ankyrin, consensus, repeat protein, ising mo 99.64
2aja_A376 Ankyrin repeat family protein; NESG, Q5ZSV0, struc 99.56
2zgd_A110 3 repeat synthetic ankyrin; ankyrin repeat, hydrox 99.48
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A Back     alignment and structure
Probab=99.92  E-value=3.6e-25  Score=184.97  Aligned_cols=137  Identities=26%  Similarity=0.259  Sum_probs=119.9

Q ss_pred             hhhhHHH----HHHHHHHHHHHhcCChhhHHHHhcCCChHHHHHHHcCcHHHHHHHHHhCCcccccccccCCcHHHHHHH
Q 045240            8 ELMNNQA----LELVKCLWKEINRQQDVDVAEVIRKPTNLLLDAAEVGNFRFLAELIGSYPDFVHELDENGRSIFHIAIL   83 (341)
Q Consensus         8 ~~lh~aa----~~~v~~Ll~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~t~LH~Aa~   83 (341)
                      +.|+.|+    .++|+.|++++.+++.     +|.+|+||||+|+..|+.++++.|++.+.+ ++.+|.+|+||||+|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~-----~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-~~~~d~~g~TpLh~A~~   79 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNA-----SDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAE   79 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTC-----CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCC-----cCCCCCCHHHHHHHcCCHHHHHHHHhcccc-hhhhccCCCCHHHHHHH
Confidence            3577777    4599999999888765     457899999999999999999999999999 68999999999999999


Q ss_pred             cCChhHHHHHHhcCCcccchhhcccCCCCcHHHHHHHhCCCCCcccccccHHhhHHHhhhHHHHHHhhCCcchhcccCCC
Q 045240           84 NRHMNVFNLIYEQGFNKQLLATYLDSCGNNILHLAAKYRSPSPYRTVSGAALEMQRELLIYKEVEMIVQPSYREMKNYDG  163 (341)
Q Consensus        84 ~g~~~iv~~Ll~~~~~~~~l~n~~d~~G~TpLH~Aa~~~~~~~v~~L~~~~l~~~~~l~~~~~v~~l~~~~~~~~~n~~G  163 (341)
                      +|+.+++++|++.|++.    |.+|.+|+||||+|++.|+.++++.|                   +..+++++.+|++|
T Consensus        80 ~g~~~~v~~Ll~~gadv----n~~d~~G~TpLh~A~~~g~~~~v~~L-------------------l~~gad~~~~d~~G  136 (169)
T 4gpm_A           80 NGHKEVVKLLISKGADV----NAKDSDGRTPLHHAAENGHKEVVKLL-------------------ISKGADVNTSDSDG  136 (169)
T ss_dssp             TTCHHHHHHHHHTTCCT----TCCCTTSCCHHHHHHHTTCHHHHHHH-------------------HHTTCCTTCCCTTS
T ss_pred             cCCHHHHHHHHHCcCCC----CCCCCCCCCHHHHHHHcCCHHHHHHH-------------------HHcCCCccccCCCC
Confidence            99999999999999874    56999999999999999996654433                   22688999999999


Q ss_pred             CChhHHHHHH
Q 045240          164 KTPRELFTVE  173 (341)
Q Consensus       164 ~Tpl~la~~~  173 (341)
                      +||+++|.+.
T Consensus       137 ~TpL~~A~~~  146 (169)
T 4gpm_A          137 RTPLDLAREH  146 (169)
T ss_dssp             CCHHHHHHHT
T ss_pred             CCHHHHHHHc
Confidence            9999999764
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Back     alignment and structure
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Back     alignment and structure
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Back     alignment and structure
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Back     alignment and structure
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Back     alignment and structure
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Back     alignment and structure
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens} Back     alignment and structure
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Back     alignment and structure
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Back     alignment and structure
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Back     alignment and structure
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Back     alignment and structure
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Back     alignment and structure
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Back     alignment and structure
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Back     alignment and structure
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Back     alignment and structure
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Back     alignment and structure
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Back     alignment and structure
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Back     alignment and structure
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A Back     alignment and structure
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Back     alignment and structure
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A* Back     alignment and structure
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Back     alignment and structure
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Back     alignment and structure
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Back     alignment and structure
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Back     alignment and structure
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Back     alignment and structure
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Back     alignment and structure
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Back     alignment and structure
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Back     alignment and structure
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Back     alignment and structure
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Back     alignment and structure
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Back     alignment and structure
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Back     alignment and structure
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Back     alignment and structure
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Back     alignment and structure
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Back     alignment and structure
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Back     alignment and structure
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Back     alignment and structure
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A* Back     alignment and structure
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Back     alignment and structure
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens} Back     alignment and structure
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Back     alignment and structure
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Back     alignment and structure
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Back     alignment and structure
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens} Back     alignment and structure
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Back     alignment and structure
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A* Back     alignment and structure
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Back     alignment and structure
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Back     alignment and structure
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Back     alignment and structure
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Back     alignment and structure
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Back     alignment and structure
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Back     alignment and structure
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Back     alignment and structure
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Back     alignment and structure
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Back     alignment and structure
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Back     alignment and structure
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Back     alignment and structure
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Back     alignment and structure
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Back     alignment and structure
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Back     alignment and structure
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Back     alignment and structure
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Back     alignment and structure
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Back     alignment and structure
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Back     alignment and structure
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Back     alignment and structure
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Back     alignment and structure
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Back     alignment and structure
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Back     alignment and structure
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Back     alignment and structure
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Back     alignment and structure
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Back     alignment and structure
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Back     alignment and structure
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Back     alignment and structure
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Back     alignment and structure
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Back     alignment and structure
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Back     alignment and structure
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Back     alignment and structure
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Back     alignment and structure
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Back     alignment and structure
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Back     alignment and structure
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Back     alignment and structure
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Back     alignment and structure
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Back     alignment and structure
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Back     alignment and structure
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Back     alignment and structure
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Back     alignment and structure
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Back     alignment and structure
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Back     alignment and structure
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens} Back     alignment and structure
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Back     alignment and structure
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Back     alignment and structure
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Back     alignment and structure
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Back     alignment and structure
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Back     alignment and structure
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Back     alignment and structure
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Back     alignment and structure
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A* Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Back     alignment and structure
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Back     alignment and structure
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Back     alignment and structure
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Back     alignment and structure
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Back     alignment and structure
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 341
d1n11a_ 408 d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta 2e-05
d1n11a_408 d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta 0.004
d1ixva_229 d.211.1.1 (A:) 26S proteasome non-ATPase regulator 4e-05
d1oy3d_255 d.211.1.1 (D:) Transcription factor inhibitor I-ka 7e-05
d2ajaa1346 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 4e-04
d1uoha_223 d.211.1.1 (A:) 26S proteasome non-ATPase regulator 6e-04
d2fo1e1277 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele 0.002
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 2e-05
 Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 5/85 (5%)

Query: 44  LLDAAEVGNFRFLAELIGSYPDFVHELDENGRSIFHIAILNRHMNVFNLIYEQGFNKQLL 103
           L  A+ +G+   +  L+       +  +    +  H+A    H  V   + +        
Sbjct: 4   LHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA- 61

Query: 104 ATYLDSCGNNILHLAAKYRSPSPYR 128
                      LH AA+    +  +
Sbjct: 62  ---KAKDDQTPLHCAARIGHTNMVK 83
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 Back     information, alignment and structure
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229 Back     information, alignment and structure
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255 Back     information, alignment and structure
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346 Back     information, alignment and structure
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223 Back     information, alignment and structure
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query341
d1oy3d_255 Transcription factor inhibitor I-kappa-B-beta, IKB 99.89
d1uoha_223 26S proteasome non-ATPase regulatory subunit 10, g 99.87
d1myoa_118 Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116] 99.87
d1ot8a_209 Neurogenic locus notch receptor domain {Fruit fly 99.81
d1s70b_291 Myosin phosphatase targeting subunit 1, MYPT1 {Chi 99.8
d1ycsb1130 53BP2 {Human (Homo sapiens) [TaxId: 9606]} 99.8
d1awcb_153 GA bindinig protein (GABP) beta 1 {Mouse (Mus musc 99.79
d1myoa_118 Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116] 99.79
d1k1aa_228 bcl-3 {Human (Homo sapiens) [TaxId: 9606]} 99.79
d1iknd_221 I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606 99.79
d1bi7b_125 Cell cycle inhibitor p16ink4A {Human (Homo sapiens 99.79
d1bi7b_125 Cell cycle inhibitor p16ink4A {Human (Homo sapiens 99.78
d1bd8a_156 Cell cycle inhibitor p19ink4D {Human (Homo sapiens 99.78
d1sw6a_301 Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch 99.78
d1uoha_223 26S proteasome non-ATPase regulatory subunit 10, g 99.78
d1oy3d_255 Transcription factor inhibitor I-kappa-B-beta, IKB 99.78
d1ycsb1130 53BP2 {Human (Homo sapiens) [TaxId: 9606]} 99.78
d1ihba_156 p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606] 99.77
d1ixva_229 26S proteasome non-ATPase regulatory subunit 10, g 99.77
d2fo1e1277 Lin-12 {Caenorhabditis elegans [TaxId: 6239]} 99.77
d1dcqa1154 Pyk2-associated protein beta {Mouse (Mus musculus) 99.76
d1ot8a_209 Neurogenic locus notch receptor domain {Fruit fly 99.73
d2fo1e1277 Lin-12 {Caenorhabditis elegans [TaxId: 6239]} 99.72
d1n11a_408 Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} 99.72
d1bd8a_156 Cell cycle inhibitor p19ink4D {Human (Homo sapiens 99.71
d1n11a_408 Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} 99.7
d1ixva_229 26S proteasome non-ATPase regulatory subunit 10, g 99.7
d1dcqa1154 Pyk2-associated protein beta {Mouse (Mus musculus) 99.7
d2ajaa1346 Hypothetical protein LPG2416 {Legionella pneumophi 99.69
d1wdya_285 RNase L, 2-5a-dependent ribonuclease {Human (Homo 99.69
d2ajaa1346 Hypothetical protein LPG2416 {Legionella pneumophi 99.66
d1s70b_291 Myosin phosphatase targeting subunit 1, MYPT1 {Chi 99.65
d1awcb_153 GA bindinig protein (GABP) beta 1 {Mouse (Mus musc 99.65
d1ihba_156 p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606] 99.62
d1iknd_221 I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606 99.59
d1sw6a_301 Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch 99.57
d1wdya_285 RNase L, 2-5a-dependent ribonuclease {Human (Homo 99.54
d1k1aa_228 bcl-3 {Human (Homo sapiens) [TaxId: 9606]} 99.48
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.6e-23  Score=183.20  Aligned_cols=164  Identities=15%  Similarity=0.126  Sum_probs=137.1

Q ss_pred             HHhhhhHHHH----HHHHHHHHHHhcCChhhHHHHhcCCChHHHHHHHcCcHHHHHHHHHhCCcccccccccCCcHHHHH
Q 045240            6 NIELMNNQAL----ELVKCLWKEINRQQDVDVAEVIRKPTNLLLDAAEVGNFRFLAELIGSYPDFVHELDENGRSIFHIA   81 (341)
Q Consensus         6 ~~~~lh~aa~----~~v~~Ll~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~t~LH~A   81 (341)
                      ++|++|+|+.    +++++|++++.+...  +..+|.+|+||||+|+..|+.++++.|++.+++ ++.+|.+|+||||+|
T Consensus         9 G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~--i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~-i~~~d~~g~tpL~~A   85 (255)
T d1oy3d_           9 GDTALHLAVIHQHEPFLDFLLGFSAGHEY--LDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-VLVAERGGHTALHLA   85 (255)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHHHTTSGG--GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTSCCHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCccc--ccCcCCCCCCccchHHhhccccccccccccccc-ccccccccchhhhhh
Confidence            4799999994    499999998877443  334678899999999999999999999999998 689999999999999


Q ss_pred             HHcCChhHHHHHHhcCCcc-------------------------------------------cchhhcccCCCCcHHHHH
Q 045240           82 ILNRHMNVFNLIYEQGFNK-------------------------------------------QLLATYLDSCGNNILHLA  118 (341)
Q Consensus        82 a~~g~~~iv~~Ll~~~~~~-------------------------------------------~~l~n~~d~~G~TpLH~A  118 (341)
                      +..++.+++++|++.+...                                           ...++.+|.+|.||||+|
T Consensus        86 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A  165 (255)
T d1oy3d_          86 CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVA  165 (255)
T ss_dssp             TTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHH
T ss_pred             hccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccccc
Confidence            9999999999997643211                                           111367899999999999


Q ss_pred             HHhCCCCCcccc--------------cccHHhhHHHhhhHHHHHHhh-CCcchhcccCCCCChhHHHHH
Q 045240          119 AKYRSPSPYRTV--------------SGAALEMQRELLIYKEVEMIV-QPSYREMKNYDGKTPRELFTV  172 (341)
Q Consensus       119 a~~~~~~~v~~L--------------~~~~l~~~~~l~~~~~v~~l~-~~~~~~~~n~~G~Tpl~la~~  172 (341)
                      +..++.++++.|              ..++++.+...+..+.++.++ .+++++.+|++|+||+++|..
T Consensus       166 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~  234 (255)
T d1oy3d_         166 VIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALL  234 (255)
T ss_dssp             HHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHT
T ss_pred             ccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            999998877665              125788888888888888777 689999999999999999865
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Back     information, alignment and structure
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Back     information, alignment and structure
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure