Citrus Sinensis ID: 045248

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
MCNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP
Secondary Structure (PSIPRED)
cEEEEEEcccccccccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccccHHHHHHHHHHHcccEEEEEcccccHHHHHHccccEEEEccccccccccccccccccEEEEccccccHHHHHcccccccEEEEEcccccHHHHHHHHHcccccEEEEEEEEEccHHHHHHHHHHHHcccEEEEEccEEccHHHHHHHHHHHHcccccEEEEEc
Secondary Structure Prediction (SSPRO)
cccccEEEEEcccccEEEEEEEcHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEcccHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHcccEEEEcccccHHEEEHccccccEEEEEccccHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHccEEEEEEEccccHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHccccEEEEEEcc
Coil and Loop (DISEMBL)
mcnlwridvshngggLAEFAVAkesstvarpsevsaaegsglpvaglTAHQALTqsagvkldgsgqqkNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVkslgadevldyktpdgaalkspsgrkydavihcatgipwstfepnlgtngkviditpgpsAMLTFALKKLTFskkqlvplllipkreNLDFLVKLVKEGKLktvinskhplskaedawaesidghatgkiivep
Flexible Loop (DISEMBL)
mcnlwridvshngggLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGaalkspsgrkYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLvplllipkrenLDFLVKLVKEgklktvinskhplskaedawaesidghatgkiivep
Low Complexity Region (SEG)
MCNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP
Disordered region (IsUnstruct)
**NLWRIDVSHNGGGLAEFA***********************************************KNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGA******GRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINS***************************
Disordered Region (DISOPRED)
MCNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP
Disordered Region (DISEMBL)
MCNLWRIDVSHNGGGLAEFAVAK****************SGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP
Disordered Region (DISPRO)
MCNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	240	2.2.26 [Sep-21-2011]
Q9SV68	329	Putative quinone-oxidored	yes	no	0.966	0.705	0.811	1e-103
Q8H0M1	329	Quinone-oxidoreductase ho	N/A	no	0.966	0.705	0.776	1e-102
Q0VC50	396	Reticulon-4-interacting p	yes	no	0.929	0.563	0.288	2e-17
Q8WWV3	396	Reticulon-4-interacting p	yes	no	0.908	0.550	0.278	5e-17
Q924D0	396	Reticulon-4-interacting p	yes	no	0.929	0.563	0.292	1e-15
Q9ZUC1	386	Quinone oxidoreductase-li	no	no	0.791	0.492	0.301	3e-15
Q7T3C7	387	Reticulon-4-interacting p	yes	no	0.925	0.573	0.266	1e-14
O42909	347	Zinc-type alcohol dehydro	yes	no	0.929	0.642	0.295	1e-13
Q8N4Q0	377	Zinc-binding alcohol dehy	no	no	0.587	0.374	0.353	2e-11
Q9P7F4	348	Zinc-type alcohol dehydro	no	no	0.379	0.261	0.391	3e-11

>sp|Q9SV68|QORH_ARATH Putative quinone-oxidoreductase homolog, chloroplastic OS=Arabidopsis thaliana GN=At4g13010 PE=2 SV=1

 Score =  374 bits (959), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/233 (81%), Positives = 209/233 (89%), Gaps = 1/233 (0%)

Query: 9   VSH-NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQ 67
           +SH  GGGLAEFAVA E  TV RP EV AAE + LPVAGLTA QALT  AG+KLDG+G++
Sbjct: 97  LSHLGGGGLAEFAVATEKLTVKRPQEVGAAEAAALPVAGLTALQALTNPAGLKLDGTGKK 156

Query: 68  KNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKS 127
            NILVTAASGGVGHYAVQLAKL N HVTA+CGARNIEFVKSLGADEVLDYKTP+GAALKS
Sbjct: 157 ANILVTAASGGVGHYAVQLAKLANAHVTATCGARNIEFVKSLGADEVLDYKTPEGAALKS 216

Query: 128 PSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLL 187
           PSG+KYDAV+HCA GIP+S FEPNL  NGKVIDITPGP+AM T+A+KK+T SKKQLVPLL
Sbjct: 217 PSGKKYDAVVHCANGIPFSVFEPNLSENGKVIDITPGPNAMWTYAVKKITMSKKQLVPLL 276

Query: 188 LIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP 240
           LIPK ENL+F+V LVKEGK+KTVI+SKHPLSKAEDAWA+SIDGHATGKIIVEP
Sbjct: 277 LIPKAENLEFMVNLVKEGKVKTVIDSKHPLSKAEDAWAKSIDGHATGKIIVEP 329

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q8H0M1|QORH_SPIOL Quinone-oxidoreductase homolog, chloroplastic OS=Spinacia oleracea GN=QOR PE=1 SV=1

 Score =  371 bits (952), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/233 (77%), Positives = 207/233 (88%), Gaps = 1/233 (0%)

Query: 9   VSH-NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQ 67
           +SH  GG LAE+AVAKE+ TVARP EVSAAEG+ LPVA LTAHQALTQ A +KLDGSG++
Sbjct: 97  LSHATGGALAEYAVAKENLTVARPPEVSAAEGAALPVAALTAHQALTQFANIKLDGSGER 156

Query: 68  KNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKS 127
           KNIL+TAASGGVGHYAVQLAKLGNTHVTA+CGARN++FVK LGADEVLDYKTP+GA+L S
Sbjct: 157 KNILITAASGGVGHYAVQLAKLGNTHVTATCGARNLDFVKGLGADEVLDYKTPEGASLTS 216

Query: 128 PSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLL 187
           PSG+KYD V+H A+GIPWSTFEPNL   GKVID+TPGP+AM+TFA KKLTFSKKQLVPLL
Sbjct: 217 PSGKKYDYVVHGASGIPWSTFEPNLSEAGKVIDLTPGPTAMMTFAWKKLTFSKKQLVPLL 276

Query: 188 LIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP 240
           LIPK  N +++V LVKE KLKTVI+SKHPLSK EDAW+  + GHATGKII+EP
Sbjct: 277 LIPKIPNFEYVVNLVKEKKLKTVIDSKHPLSKGEDAWSRIMGGHATGKIIIEP 329

Spinacia oleracea (taxid: 3562)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q0VC50|RT4I1_BOVIN Reticulon-4-interacting protein 1, mitochondrial OS=Bos taurus GN=RTN4IP1 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 112/243 (46%), Gaps = 20/243 (8%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           G L+EF V   +    +P  ++  + + LP   LTA  A+ +  G+  D +   K +L+ 
Sbjct: 153 GTLSEFVVVSGNEVSHKPRSLTHTQAASLPYVALTAWSAINKVGGLN-DRNCTGKRVLIL 211

Query: 74  AASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKY 133
            ASGGVG +A+Q+ K  + HVTA C     E V+ LGAD+V+DYK+ +  A +  S + +
Sbjct: 212 GASGGVGTFAIQVMKAWDAHVTAVCSQDASELVRKLGADDVIDYKSGNVEA-QLKSSKPF 270

Query: 134 DAVIHCATGI--PWS-TFEPNLGTNGKVIDITPGPSAMLTFALKK------LTFSKKQLV 184
           D ++    G    W+  F         V  +TP    M    +        +T   K L 
Sbjct: 271 DFILDNVGGSTETWALKFLKKWSGATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSKTLK 330

Query: 185 PL---------LLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGK 235
                        +     LD + +LV+ GK++ VI    P SK  +A+ +   GHA GK
Sbjct: 331 HFWQGVHYRWAFFMASGPCLDDIAELVEAGKIQPVIEKTFPFSKVPEAFLKVERGHARGK 390

Query: 236 IIV 238
            ++
Sbjct: 391 TVI 393

Appears to be a potent inhibitor of regeneration following spinal cord injury.

Bos taurus (taxid: 9913)

>sp|Q8WWV3|RT4I1_HUMAN Reticulon-4-interacting protein 1, mitochondrial OS=Homo sapiens GN=RTN4IP1 PE=1 SV=2

 Score = 88.2 bits (217), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 111/248 (44%), Gaps = 30/248 (12%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           G L+EF V   +    +P  ++  + + LP   LTA  A+ +  G+  D +   K +L+ 
Sbjct: 153 GTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLN-DKNCTGKRVLIL 211

Query: 74  AASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKT-----------PDG 122
            ASGGVG +A+Q+ K  + HVTA C     E V+ LGAD+V+DYK+           P  
Sbjct: 212 GASGGVGTFAIQVMKAWDAHVTAVCSQDASELVRKLGADDVIDYKSGSVEEQLKSLKPFD 271

Query: 123 AALKSPSG----------RKYDAVIHCATGIPWSTFEPNLGTNGKVID--ITPGPSAMLT 170
             L +  G          +K+    +     P+      LG    ++   +T G  A+  
Sbjct: 272 FILDNVGGSTETWAPDFLKKWSGATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSKALKH 331

Query: 171 FALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDG 230
           F  K + +          +     LD + +LV  GK++ VI    P SK  +A+ +   G
Sbjct: 332 F-WKGVHYRWA-----FFMASGPCLDDIAELVDAGKIRPVIEQTFPFSKVPEAFLKVERG 385

Query: 231 HATGKIIV 238
           HA GK ++
Sbjct: 386 HARGKTVI 393

Appears to be a potent inhibitor of regeneration following spinal cord injury.

Homo sapiens (taxid: 9606)

>sp|Q924D0|RT4I1_MOUSE Reticulon-4-interacting protein 1, mitochondrial OS=Mus musculus GN=Rtn4ip1 PE=1 SV=2

 Score = 83.6 bits (205), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 108/243 (44%), Gaps = 20/243 (8%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           G L+EF V   +    +P  ++  + + LP   LTA  A+ +  G+  D + + K  L+ 
Sbjct: 153 GTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLS-DKNCKGKRALIL 211

Query: 74  AASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKY 133
            ASGGVG +A+Q+ K    HVTA C     E V+ LGADEV+DY T      +  S + +
Sbjct: 212 GASGGVGTFAIQVMKAWGAHVTAVCSKDASELVRKLGADEVIDY-TLGSVEEQLKSLKLF 270

Query: 134 DAVIHCATGI--PWS-TFEPNLGTNGKVIDITPGPSAMLTFALKK------LTFSKKQLV 184
           D ++    G    W+  F         V  +TP    M    +        +T   K L 
Sbjct: 271 DFILDNVGGSTETWALNFLKKWSGATYVTLVTPFLLNMDRLGVADGMLQTGVTVGTKALK 330

Query: 185 PL---------LLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGK 235
            L           +     LD + +LV  GK++ VI    P S+  +A+ +   GHA GK
Sbjct: 331 HLWQGVHYRWAFFMASGPYLDEIAELVDAGKIRPVIERTFPFSEVPEAFLKVERGHARGK 390

Query: 236 IIV 238
            +V
Sbjct: 391 TVV 393

Appears to be a potent inhibitor of regeneration following spinal cord injury.

Mus musculus (taxid: 10090)

>sp|Q9ZUC1|QORL_ARATH Quinone oxidoreductase-like protein At1g23740, chloroplastic OS=Arabidopsis thaliana GN=At1g23740 PE=1 SV=2

 Score = 82.4 bits (202), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 109/242 (45%), Gaps = 52/242 (21%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQ---SAGVKLDGSGQQKNI 70
           G LAE+   +E     +P  +  A+ +GLP+A  TA + L +   SAG         K+I
Sbjct: 180 GSLAEYTAVEEKLLALKPKNIDFAQAAGLPLAIETADEGLVRTEFSAG---------KSI 230

Query: 71  LVTAASGGVGHYAVQLAK--LGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSP 128
           LV   +GGVG   +QLAK   G + V A+     +E V+SLGAD  +DY   +   L   
Sbjct: 231 LVLNGAGGVGSLVIQLAKHVYGASKVAATASTEKLELVRSLGADLAIDYTKENIEDLPDK 290

Query: 129 SGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDIT-----PGPSAMLTFALKKLTFSKKQL 183
               +DA+  C   +        +   GKV+ +T     PG   ++T             
Sbjct: 291 YDVVFDAIGMCDKAVKV------IKEGGKVVALTGAVTPPGFRFVVT------------- 331

Query: 184 VPLLLIPKRENLDFLVKL---VKEGKLKTVINSK--HPLSKAEDAWAESIDGHATGKIIV 238
                     N D L KL   ++ GK+K V++ K   P S+  DA++     HATGK++V
Sbjct: 332 ---------SNGDVLKKLNPYIESGKVKPVVDPKGPFPFSRVADAFSYLETNHATGKVVV 382

Query: 239 EP 240
            P
Sbjct: 383 YP 384

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q7T3C7|RT4I1_DANRE Reticulon-4-interacting protein 1 homolog, mitochondrial OS=Danio rerio GN=rtn4ip1 PE=2 SV=2

 Score = 80.1 bits (196), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 106/244 (43%), Gaps = 22/244 (9%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           G LAEF V   +    +P  +   E + +P    TA  A+  + G+  D S + K +L+ 
Sbjct: 139 GSLAEFVVVSGNEVSHKPKSLRHDEAASIPYVAATAWSAIVNTGGLNKDNSAK-KRVLIL 197

Query: 74  AASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKT-PDGAALKSPSGRK 132
             SGGVG +A+Q+ K    HVT +C       V+ LGAD+V+DY   P    LK+    K
Sbjct: 198 GGSGGVGTFAIQMVKAWGAHVTVTCSQNAERLVRDLGADDVVDYTAGPVEKQLKNLE--K 255

Query: 133 YDAVIHCATG----------IPWS------TFEPNLGTNGKVIDITPGPSAMLTFALKKL 176
           +D ++    G           PWS         P L    ++        + +T   K +
Sbjct: 256 FDLILDSIGGETEKWALDLLKPWSGAKFVTLITPFLQNTDRLGLADGMMQSAVTVGCKVV 315

Query: 177 TFSKKQLVPL--LLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATG 234
              +K +        P    LD + ++V  GK++ V+      ++  +A+ +   GHA G
Sbjct: 316 KNLRKGVHYRWGFFAPSGSALDEVSEMVDAGKVRPVVEEVFSFAQVPEAFQKVEQGHARG 375

Query: 235 KIIV 238
           K +V
Sbjct: 376 KTVV 379

May be a potent inhibitor of regeneration.

Danio rerio (taxid: 7955)

>sp|O42909|YBI2_SCHPO Zinc-type alcohol dehydrogenase-like protein C16A3.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16A3.02c PE=3 SV=1

 Score = 76.6 bits (187), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 100/237 (42%), Gaps = 14/237 (5%)

Query: 11  HNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNI 70
             GG  A   V  +      P  VS  EG+G  +AGLTA + L +   VK         +
Sbjct: 115 RQGGSCATHIVTGDKDVWHLPDGVSFNEGAGFGIAGLTAWEVLVRQMKVK-----PGTKL 169

Query: 71  LVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSG 130
           ++  ASGGVG +AV LAK     VT      N++  KSLGA   LDYK  D    +    
Sbjct: 170 VIEGASGGVGTFAVALAKALECEVTTISSTENLDLCKSLGATHTLDYK-KDNLVERLADL 228

Query: 131 RKYDAVIHCAT-GIPW---STF-EPN---LGTNGKVIDITPGPSAMLTFALKKLTFSKKQ 182
             YD V  C    + +   S F +P+    G  G +     G     T   + L  S   
Sbjct: 229 GPYDFVFDCVNDNVLYRASSKFVKPDGAFFGIGGDITLSYVGSRLSRTLRPRVLGGSSHS 288

Query: 183 LVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVE 239
              +LL   +E L   V  V +  +KTVI+S +      +A+   +     GK+I++
Sbjct: 289 YYNILLHVDQEMLRDFVDFVMKHNIKTVIDSVYDFEDTVEAFNRLMTHRCKGKVIIK 345

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8N4Q0|ZADH2_HUMAN Zinc-binding alcohol dehydrogenase domain-containing protein 2 OS=Homo sapiens GN=ZADH2 PE=1 SV=1

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 73/150 (48%), Gaps = 9/150 (6%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           G  AE+ V   S  +A P      E   L V+G TA+ +L +     L G  + K +LVT
Sbjct: 127 GSFAEYTVVPAS--IATPVPSVKPEYLTLLVSGTTAYISLKE-----LGGLSEGKKVLVT 179

Query: 74  AASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKT-PDGAALKSPSGR 131
           AA+GG G +A+QL+K    HV  +C +     F+KSLG D  ++YKT P G  LK     
Sbjct: 180 AAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPE 239

Query: 132 KYDAVIHCATGIPWSTFEPNLGTNGKVIDI 161
             D V     G  +      L T G++I I
Sbjct: 240 GVDVVYESVGGAMFDLAVDALATKGRLIVI 269

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q9P7F4|YKK1_SCHPO Zinc-type alcohol dehydrogenase-like protein C2E1P3.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2E1P3.01 PE=3 SV=1

 Score = 68.9 bits (167), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 6/97 (6%)

Query: 31  PSEVSAAEGSGLPVAGLTAHQALTQSAGVKL---DGS---GQQKNILVTAASGGVGHYAV 84
           P  ++ ++ + LP+   TA Q L Q  G+ L   DGS    QQK +LV + S  VG Y V
Sbjct: 111 PKNITPSQAATLPLTFTTASQGLNQYLGLPLPPTDGSKNSAQQKWVLVWSGSSSVGQYVV 170

Query: 85  QLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPD 121
           QLA      V A+C   N +++K LGAD  +DY  P+
Sbjct: 171 QLAHHAGYKVIATCSPHNFDWIKKLGADFTVDYHDPN 207

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
224149146	229	predicted protein [Populus trichocarpa]	0.954	1.0	0.868	1e-111
224060149	335	predicted protein [Populus trichocarpa]	0.966	0.692	0.862	1e-110
255599083	230	Quinone oxidoreductase, putative [Ricinu	0.95	0.991	0.859	1e-110
359494786	329	PREDICTED: putative quinone-oxidoreducta	0.966	0.705	0.858	1e-110
359494792	229	PREDICTED: quinone-oxidoreductase homolo	0.954	1.0	0.855	1e-109
118488767	329	unknown [Populus trichocarpa]	0.966	0.705	0.854	1e-108
224121506	329	predicted protein [Populus trichocarpa]	0.954	0.696	0.834	1e-106
356527330	329	PREDICTED: putative quinone-oxidoreducta	0.95	0.693	0.820	1e-104
449464110	329	PREDICTED: quinone-oxidoreductase homolo	0.966	0.705	0.798	1e-104
312283475	329	unnamed protein product [Thellungiella h	0.966	0.705	0.815	1e-104

>gi|224149146|ref|XP_002336761.1| predicted protein [Populus trichocarpa] gi|222836670|gb|EEE75063.1| predicted protein [Populus trichocarpa]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 199/229 (86%), Positives = 214/229 (93%)

Query: 12  NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNIL 71
           +GGGLAEF VAK+   VARP EVSAAEG+GLPVAGLTAHQA+TQSAGVKLDGSG QKNIL
Sbjct: 1   SGGGLAEFVVAKKGLPVARPPEVSAAEGAGLPVAGLTAHQAVTQSAGVKLDGSGNQKNIL 60

Query: 72  VTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGR 131
           +TAASGGVGHYAVQLAKLGNTHVTA+CGARNIEFVKSLGADEVLDYKTP+GAALKSPSG+
Sbjct: 61  ITAASGGVGHYAVQLAKLGNTHVTATCGARNIEFVKSLGADEVLDYKTPEGAALKSPSGK 120

Query: 132 KYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPK 191
           KYDAVIHCA G+PWSTFEPNL  NGKVIDITPGPSA +TFA KKLTFSKKQLVPLLLIP 
Sbjct: 121 KYDAVIHCAAGVPWSTFEPNLSANGKVIDITPGPSAFMTFAFKKLTFSKKQLVPLLLIPN 180

Query: 192 RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP 240
            ENL++LV LVKEGKLKTVI+SKHPLS+AEDAWA+SID HATGKIIVEP
Sbjct: 181 GENLNYLVNLVKEGKLKTVIDSKHPLSRAEDAWAKSIDSHATGKIIVEP 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060149|ref|XP_002300061.1| predicted protein [Populus trichocarpa] gi|222847319|gb|EEE84866.1| predicted protein [Populus trichocarpa]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/233 (86%), Positives = 216/233 (92%), Gaps = 1/233 (0%)

Query: 9   VSH-NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQ 67
           +SH +GGGLAEF VAK+S  VARP EVSAAEG+GLPVAGLTAHQA+TQSAGVKLDGSG Q
Sbjct: 103 LSHISGGGLAEFVVAKKSLPVARPPEVSAAEGAGLPVAGLTAHQAVTQSAGVKLDGSGNQ 162

Query: 68  KNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKS 127
           KNIL+TAASGGVGHYAVQLAKLGNTHVTA+CGARNIEFVKSLGADEVLDYKTP+GAALKS
Sbjct: 163 KNILITAASGGVGHYAVQLAKLGNTHVTATCGARNIEFVKSLGADEVLDYKTPEGAALKS 222

Query: 128 PSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLL 187
           PSG+KYDAVIHCA GIPWSTFEPNL  NGKVIDITPGPSA +  A KKLTFSKKQLVPLL
Sbjct: 223 PSGKKYDAVIHCAAGIPWSTFEPNLSANGKVIDITPGPSAFMASAFKKLTFSKKQLVPLL 282

Query: 188 LIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP 240
           LIP  ENL++LV LVKEGKLKTVI+SKHPLS+AEDAWA+ IDGHATGKIIVEP
Sbjct: 283 LIPNGENLNYLVNLVKEGKLKTVIDSKHPLSRAEDAWAKIIDGHATGKIIVEP 335

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255599083|ref|XP_002537148.1| Quinone oxidoreductase, putative [Ricinus communis] gi|223517321|gb|EEF25235.1| Quinone oxidoreductase, putative [Ricinus communis]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/228 (85%), Positives = 214/228 (93%)

Query: 13  GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILV 72
           GGGLAEFAVAKES TVARP EVSAAEGS LP+AGLTAHQALTQSAG+KLDG+G+Q NILV
Sbjct: 3   GGGLAEFAVAKESLTVARPPEVSAAEGSTLPIAGLTAHQALTQSAGIKLDGNGKQANILV 62

Query: 73  TAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRK 132
           TAASGGVGH+AVQLAKLGNTHVTA+CGARN EFVKSLGADEVLDY+TP+GA+LKSPSGRK
Sbjct: 63  TAASGGVGHFAVQLAKLGNTHVTATCGARNAEFVKSLGADEVLDYRTPEGASLKSPSGRK 122

Query: 133 YDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKR 192
           YDAVIHCATGIPWSTFEPNL  NGKVIDITP  +AM+TFALKKLTFSKKQLVPL++  K 
Sbjct: 123 YDAVIHCATGIPWSTFEPNLSENGKVIDITPNATAMMTFALKKLTFSKKQLVPLIVTVKA 182

Query: 193 ENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP 240
           ENLD+LVKL+KEGKLK  I+SKHPLSKAEDAWA+SIDGHATGKI+VEP
Sbjct: 183 ENLDYLVKLLKEGKLKAAIDSKHPLSKAEDAWAKSIDGHATGKIVVEP 230

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494786|ref|XP_003634840.1| PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic [Vitis vinifera]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/233 (85%), Positives = 219/233 (93%), Gaps = 1/233 (0%)

Query: 9   VSH-NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQ 67
           +SH +GGGLAEFAVAK++ TV+RP+EVSAAEG+GLP+AGLTAHQALTQ  G+ LDGSG Q
Sbjct: 97  LSHFSGGGLAEFAVAKKNITVSRPAEVSAAEGAGLPIAGLTAHQALTQVVGINLDGSGPQ 156

Query: 68  KNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKS 127
           K+IL+TAASGGVGHYAVQLAKLGNTHVTA+CGARNI+ VKSLGADEVLDYKTPDGAALKS
Sbjct: 157 KSILITAASGGVGHYAVQLAKLGNTHVTATCGARNIDLVKSLGADEVLDYKTPDGAALKS 216

Query: 128 PSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLL 187
           PSGR +DAVIHCATGIPWSTFEPNL TNGKVIDITP  SAM+TFALKKLTFSKKQLVPLL
Sbjct: 217 PSGRTFDAVIHCATGIPWSTFEPNLSTNGKVIDITPNASAMVTFALKKLTFSKKQLVPLL 276

Query: 188 LIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP 240
           L PK+ENL+ LV LVKEGKLKTVI+SKHPLSKAEDAWA+SIDGHATGKIIVEP
Sbjct: 277 LSPKKENLECLVGLVKEGKLKTVIDSKHPLSKAEDAWAKSIDGHATGKIIVEP 329

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494792|ref|XP_002267533.2| PREDICTED: quinone-oxidoreductase homolog, chloroplastic-like, partial [Vitis vinifera]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/229 (85%), Positives = 214/229 (93%)

Query: 12  NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNIL 71
           +GGGLAEFAVAKE+ TV+RP+EVSAAEG+GLP+AGLTAHQALTQ  G+ LDGSG +KNIL
Sbjct: 1   SGGGLAEFAVAKENLTVSRPAEVSAAEGAGLPIAGLTAHQALTQVVGINLDGSGPEKNIL 60

Query: 72  VTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGR 131
           +TAASGGVGHYAVQLAKLGNTHVTA+CGARNI+ VKSLGADEVLDYKTPDGAALKSPSGR
Sbjct: 61  ITAASGGVGHYAVQLAKLGNTHVTATCGARNIDLVKSLGADEVLDYKTPDGAALKSPSGR 120

Query: 132 KYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPK 191
            +D VIHCATGIPWSTFEPNL TNGKVIDITP  S MLTFALKKLTFSKKQLVPL++ PK
Sbjct: 121 TFDFVIHCATGIPWSTFEPNLSTNGKVIDITPTASTMLTFALKKLTFSKKQLVPLVVSPK 180

Query: 192 RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP 240
           +ENL+ LV LVKEGKLKTVI+SKHPLSKAEDAWA+SIDGHATGKIIVEP
Sbjct: 181 KENLECLVGLVKEGKLKTVIDSKHPLSKAEDAWAKSIDGHATGKIIVEP 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488767|gb|ABK96194.1| unknown [Populus trichocarpa]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/233 (85%), Positives = 214/233 (91%), Gaps = 1/233 (0%)

Query: 9   VSH-NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQ 67
           +SH +GGGLAEF VAK+   VARP EVSAAEG+GLPVAGLTAHQA+TQSAGVKLDGSG Q
Sbjct: 97  LSHISGGGLAEFVVAKKGLPVARPPEVSAAEGAGLPVAGLTAHQAVTQSAGVKLDGSGNQ 156

Query: 68  KNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKS 127
           KNIL+TAASGGVGHYAVQLAKLGNTHVTA+CGARNIEFVKSLGADEVLDYKTP+GAALKS
Sbjct: 157 KNILITAASGGVGHYAVQLAKLGNTHVTATCGARNIEFVKSLGADEVLDYKTPEGAALKS 216

Query: 128 PSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLL 187
           PSG+KYDAVIHCA GIPWSTFEPNL  NGKVIDITPG SA +  A KKLTFSKKQLVPLL
Sbjct: 217 PSGKKYDAVIHCAAGIPWSTFEPNLSANGKVIDITPGLSAYMASAFKKLTFSKKQLVPLL 276

Query: 188 LIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP 240
           LIP  ENL++LV LVKEGKLKTVI+SKHPLS+AEDAWA+ IDGHATGKIIVEP
Sbjct: 277 LIPNGENLNYLVNLVKEGKLKTVIDSKHPLSRAEDAWAKIIDGHATGKIIVEP 329

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121506|ref|XP_002330717.1| predicted protein [Populus trichocarpa] gi|222872493|gb|EEF09624.1| predicted protein [Populus trichocarpa]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/229 (83%), Positives = 212/229 (92%)

Query: 12  NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNIL 71
           +GGGLAEFAVAK+S +VARP EVSAAE +GLP+AGL A++ALTQ AGVKLDGSG QKNIL
Sbjct: 101 SGGGLAEFAVAKKSLSVARPPEVSAAEAAGLPIAGLAAYEALTQCAGVKLDGSGIQKNIL 160

Query: 72  VTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGR 131
           +TAASGGVGHYAVQLAKLGNT+VTA+CGARNIEFVK LGADEVLDYKTP+GAALKSPSG+
Sbjct: 161 ITAASGGVGHYAVQLAKLGNTYVTATCGARNIEFVKDLGADEVLDYKTPEGAALKSPSGK 220

Query: 132 KYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPK 191
           KYDAVIHCA GIPWSTFEPNL  NGKVI ++PGPSAM+TFA+KKLTFSKKQL+PL++ PK
Sbjct: 221 KYDAVIHCALGIPWSTFEPNLSENGKVIHLSPGPSAMITFAVKKLTFSKKQLMPLIITPK 280

Query: 192 RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP 240
            ENL  LV LVKEGKLKTVI+SKHPLSKAEDAWA+ IDGHATGKIIVEP
Sbjct: 281 GENLKCLVNLVKEGKLKTVIDSKHPLSKAEDAWAKGIDGHATGKIIVEP 329

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527330|ref|XP_003532264.1| PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic-like [Glycine max]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/228 (82%), Positives = 211/228 (92%)

Query: 12  NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNIL 71
           +GGGLAEFAVAKES T +RPSE SA+E +GLPVAGLTA QALT+S G+KLDGSG++KNIL
Sbjct: 101 SGGGLAEFAVAKESITASRPSESSASECAGLPVAGLTALQALTKSIGIKLDGSGERKNIL 160

Query: 72  VTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGR 131
           VTAASGGVGHYAVQLAKLGNTHVTA+CGARNIE VKSLGADEV+DYKTPDGAALKSPSG+
Sbjct: 161 VTAASGGVGHYAVQLAKLGNTHVTATCGARNIELVKSLGADEVIDYKTPDGAALKSPSGK 220

Query: 132 KYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPK 191
           KYDAVIHC  G PWSTFEPNL  NGKV+DI+P  ++MLTFALKKLTFSKKQLVPLLLIPK
Sbjct: 221 KYDAVIHCVVGFPWSTFEPNLTMNGKVVDISPSSASMLTFALKKLTFSKKQLVPLLLIPK 280

Query: 192 RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVE 239
            E+L +L+ LVKEGKLKTV++SK+PL+KAEDAWA+SIDGHATGKII+E
Sbjct: 281 GEDLQYLIDLVKEGKLKTVVDSKYPLTKAEDAWAKSIDGHATGKIIIE 328

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464110|ref|XP_004149772.1| PREDICTED: quinone-oxidoreductase homolog, chloroplastic-like [Cucumis sativus] gi|449475383|ref|XP_004154434.1| PREDICTED: quinone-oxidoreductase homolog, chloroplastic-like [Cucumis sativus]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/233 (79%), Positives = 210/233 (90%), Gaps = 1/233 (0%)

Query: 9   VSH-NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQ 67
           +SH  GGGLAE+AV KES TV RP EV+AA+G+ LPVA LTAHQALTQ AGVKLDGSG Q
Sbjct: 97  LSHATGGGLAEYAVGKESVTVYRPPEVTAADGAALPVAALTAHQALTQVAGVKLDGSGPQ 156

Query: 68  KNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKS 127
            NIL+TAASGGVGHYAVQLAKLGNTHVTA+CGARNIEFVKSLGADEV+DY+TP+GAALKS
Sbjct: 157 SNILITAASGGVGHYAVQLAKLGNTHVTATCGARNIEFVKSLGADEVIDYRTPEGAALKS 216

Query: 128 PSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLL 187
           PSG+KYDAV+HCA+GIPWS FEPNL  NGKVIDITP P+A+ TFA KKLTFSKKQLVPLL
Sbjct: 217 PSGKKYDAVVHCASGIPWSVFEPNLSPNGKVIDITPTPAALATFAFKKLTFSKKQLVPLL 276

Query: 188 LIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP 240
           +  K ENL +L+ L+KE KLKTVI+S++PLSKAEDAWA+S+DGHATGKIIVEP
Sbjct: 277 MSFKSENLSYLINLIKERKLKTVIDSRYPLSKAEDAWAKSMDGHATGKIIVEP 329

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312283475|dbj|BAJ34603.1| unnamed protein product [Thellungiella halophila]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/233 (81%), Positives = 209/233 (89%), Gaps = 1/233 (0%)

Query: 9   VSH-NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQ 67
           +SH  GGGLAEFAVA E  TV RP EV  AE + LPVAGLTA QALT  AG+KLDG+G Q
Sbjct: 97  LSHLTGGGLAEFAVASEKLTVRRPEEVGPAEAASLPVAGLTALQALTNPAGLKLDGTGHQ 156

Query: 68  KNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKS 127
            NILVTAASGGVGHYAVQLAKLGN HVTA+CGARNI+FVKSLGADEVLDYKTP+GAALKS
Sbjct: 157 ANILVTAASGGVGHYAVQLAKLGNAHVTATCGARNIDFVKSLGADEVLDYKTPEGAALKS 216

Query: 128 PSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLL 187
           PSG+KYDAVIHCA GIP+STFEPNL  NGKVIDITPGPSAM T+A+KK+T SKKQLVPLL
Sbjct: 217 PSGKKYDAVIHCANGIPFSTFEPNLAANGKVIDITPGPSAMWTYAVKKITMSKKQLVPLL 276

Query: 188 LIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP 240
           LIPK ENL+F+V LVKEGK+KTVI+SKHPLSKAE+AWA+SIDGHATGKIIV+P
Sbjct: 277 LIPKAENLEFMVNLVKEGKVKTVIDSKHPLSKAEEAWAKSIDGHATGKIIVQP 329

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
TAIR|locus:2123206	329	AT4G13010 [Arabidopsis thalian	0.966	0.705	0.811	1.5e-97
ASPGD|ASPL0000057264	332	AN10098 [Emericella nidulans (	0.929	0.671	0.320	6.8e-24
UNIPROTKB|G5EH83	339	MGCH7_ch7g170 "Uncharacterized	0.958	0.678	0.293	6.1e-23
UNIPROTKB|F1NL88	390	RTN4IP1 "Uncharacterized prote	0.433	0.266	0.420	2.8e-22
UNIPROTKB|Q0VC50	396	RTN4IP1 "Reticulon-4-interacti	0.504	0.305	0.36	3.7e-22
UNIPROTKB|F6V4D2	426	RTN4IP1 "Uncharacterized prote	0.437	0.246	0.377	4.7e-22
ASPGD|ASPL0000065803	357	AN10947 [Emericella nidulans (	0.929	0.624	0.307	9e-22
UNIPROTKB|F1RT47	396	LOC100627610 "Uncharacterized	0.437	0.265	0.377	1e-21
TIGR_CMR|BA_3435	317	BA_3435 "alcohol dehydrogenase	0.916	0.694	0.309	1.1e-21
UNIPROTKB|Q8WWV3	396	RTN4IP1 "Reticulon-4-interacti	0.437	0.265	0.377	1.7e-21

TAIR|locus:2123206 AT4G13010 [Arabidopsis thaliana (taxid:3702)]

 Score = 969 (346.2 bits), Expect = 1.5e-97, P = 1.5e-97
 Identities = 189/233 (81%), Positives = 209/233 (89%)

Query:     9 VSH-NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQ 67
             +SH  GGGLAEFAVA E  TV RP EV AAE + LPVAGLTA QALT  AG+KLDG+G++
Sbjct:    97 LSHLGGGGLAEFAVATEKLTVKRPQEVGAAEAAALPVAGLTALQALTNPAGLKLDGTGKK 156

Query:    68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKS 127
              NILVTAASGGVGHYAVQLAKL N HVTA+CGARNIEFVKSLGADEVLDYKTP+GAALKS
Sbjct:   157 ANILVTAASGGVGHYAVQLAKLANAHVTATCGARNIEFVKSLGADEVLDYKTPEGAALKS 216

Query:   128 PSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLL 187
             PSG+KYDAV+HCA GIP+S FEPNL  NGKVIDITPGP+AM T+A+KK+T SKKQLVPLL
Sbjct:   217 PSGKKYDAVVHCANGIPFSVFEPNLSENGKVIDITPGPNAMWTYAVKKITMSKKQLVPLL 276

Query:   188 LIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP 240
             LIPK ENL+F+V LVKEGK+KTVI+SKHPLSKAEDAWA+SIDGHATGKIIVEP
Sbjct:   277 LIPKAENLEFMVNLVKEGKVKTVIDSKHPLSKAEDAWAKSIDGHATGKIIVEP 329

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=RCA

ASPGD|ASPL0000057264 AN10098 [Emericella nidulans (taxid:162425)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 73/228 (32%), Positives = 108/228 (47%)

Query:    14 GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKN--IL 71
             G   ++ +A       R   +S  E + +P++  TA QA    +G+   GS + K   IL
Sbjct:   101 GDARDYTIATTEELAHRAKNLSWVESAAVPLSAETAWQAFFTHSGIGKFGSEEWKGKRIL 160

Query:    72 VTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGR 131
             VTAA+GGVG + VQ+  L    V  +CG RN EFV+ LGA E+LDY   D  A       
Sbjct:   161 VTAAAGGVGVWLVQIGALLGARVVGTCGPRNSEFVRGLGATEILDYHRTDFKAWGLQPEN 220

Query:   132 KYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPK 191
             K D V+ C  G         L  NG +I I   P       L+    + K  +   + P 
Sbjct:   221 KVDLVVDCVGGKALEDAWWTLKDNGTIIGIVQPPEQKRPEDLEVTGVTDKFFI---MSPS 277

Query:   192 RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVE 239
              ++L+ + K V+EGK   V++S   L + E  +     GHA GK++ +
Sbjct:   278 GKDLEQVTKFVEEGKCWPVVDSVWSLEQFEPGYERLESGHARGKVVFD 325

GO:0005622 "intracellular" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|G5EH83 MGCH7_ch7g170 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 72/245 (29%), Positives = 117/245 (47%)

Query:     4 LWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDG 63
             L R+D   + G LAE+ + +   +      V+  E +G   A LT  Q +  +A +K   
Sbjct:    98 LGRVDPRGSQGTLAEYTILEHEGSAKIADNVTFEEAAGANTAALTGLQPI--AANIK--- 152

Query:    64 SGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGA 123
              G    + +   +GG G YA+Q+AK    HVTA+C     +F K LGADE++DYKT D  
Sbjct:   153 EGSDAKVFINGGAGGTGTYAIQIAKQLGCHVTATCSTAKAQFCKDLGADEIIDYKTSDVV 212

Query:   124 ALKSPSGRKYDAVIHCATGIPWSTF--EPN-LGTNGKVIDITPGP-SAMLTFALKKLTF- 178
             A     G+ +D  +      P + +   P+ L    K I +     SA++T  +K L   
Sbjct:   213 AELKKKGQVFDLAVDLVGFSPGNLYTGSPDYLRPEAKYIAVGGAANSAVVTSMVKGLMLP 272

Query:   179 -----SKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHAT 233
                   K+++   +      +L  + + +  GK+KTV +   P  + ++A+AE   G A 
Sbjct:   273 GFLGGGKRKMEFYMTSNNHNDLSRVSEWLANGKIKTVTHKTFPFEQVKEAFAELKTGRAA 332

Query:   234 GKIIV 238
             GKII+
Sbjct:   333 GKIII 337

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

UNIPROTKB|F1NL88 RTN4IP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 196 (74.1 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
 Identities = 45/107 (42%), Positives = 61/107 (57%)

Query:    14 GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDG-SGQQKNILV 72
             G L+EF VA  +    +P  +S  E + LP  GLTA  A+ +  G+     SG  K +L+
Sbjct:   144 GTLSEFVVASANEVSFKPKCLSHVEAASLPYVGLTAWSAINKVGGLNQSNCSG--KRVLI 201

Query:    73 TAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKT 119
               ASGGVG +AVQL K    HVTA C       ++ LGAD+V+DYK+
Sbjct:   202 LGASGGVGTFAVQLVKAWGAHVTAVCSHDAGTLMRKLGADDVIDYKS 248

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|Q0VC50 RTN4IP1 "Reticulon-4-interacting protein 1, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 198 (74.8 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
 Identities = 45/125 (36%), Positives = 71/125 (56%)

Query:    14 GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
             G L+EF V   +    +P  ++  + + LP   LTA  A+ +  G+  D +   K +L+ 
Sbjct:   153 GTLSEFVVVSGNEVSHKPRSLTHTQAASLPYVALTAWSAINKVGGLN-DRNCTGKRVLIL 211

Query:    74 AASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPD-GAALKSPSGRK 132
              ASGGVG +A+Q+ K  + HVTA C     E V+ LGAD+V+DYK+ +  A LKS   + 
Sbjct:   212 GASGGVGTFAIQVMKAWDAHVTAVCSQDASELVRKLGADDVIDYKSGNVEAQLKS--SKP 269

Query:   133 YDAVI 137
             +D ++
Sbjct:   270 FDFIL 274

GO:0005739 "mitochondrion" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F6V4D2 RTN4IP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 194 (73.4 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
 Identities = 40/106 (37%), Positives = 61/106 (57%)

Query:    14 GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
             G L+EF V   +    +P  ++  + + LP   LTA  A+ +  G+  D +   K +L+ 
Sbjct:   183 GTLSEFVVVNGNEVSLKPKSLTHTQAASLPYVALTAWSAINKVGGLN-DKNCTGKRVLIL 241

Query:    74 AASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKT 119
              ASGGVG +A+Q+ K  + HVTA C     E V+ LGAD+V+DYK+
Sbjct:   242 GASGGVGTFAIQVMKAWDAHVTAVCSQDASELVRKLGADDVIDYKS 287

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ASPGD|ASPL0000065803 AN10947 [Emericella nidulans (taxid:162425)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 72/234 (30%), Positives = 116/234 (49%)

Query:    14 GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGV-KLDGSGQQKNILV 72
             G   E+ +A  +     P  VS  + + L VA  TA+Q+L     + K +G G    + +
Sbjct:   121 GTTGEYILADANDVAHLPEGVSVDDAACLGVAVRTAYQSLKNYLDLSKFEG-GSGPRVFI 179

Query:    73 TAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRK 132
                SGG G +A+Q+AK+    VT +C  RNIE V+ LGADE++DY T +        G  
Sbjct:   180 NGGSGGCGVFAIQIAKMLGCQVTTTCSGRNIELVRDLGADEIIDYTTTNVTETLKTKGLV 239

Query:   133 YDAVIHCATGIPWSTF-EPNLGTNGKVIDITPGPSAMLTFALKKLT--F---SKKQLVPL 186
             YD VI    G+P + + E +       + +  G  ++LT   + +T  F    ++  VPL
Sbjct:   240 YDHVID-HIGLPGNLYAECHHFLKPSGVWVQVGAGSILTAFWRAITPRFLGGGRRWFVPL 298

Query:   187 LLIPKRENLDFLVKLVKEGKLKTVINSKH--PLSKAEDAWAESIDGHATGKIIV 238
             ++   +E+L  +  L+KEGKL+TV +          + A+     G A GKI++
Sbjct:   299 MMANSKEDLVEVGNLLKEGKLRTVKDGNRVWEFGDVKKAYELLASGRARGKIVI 352

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|F1RT47 LOC100627610 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 195 (73.7 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
 Identities = 40/106 (37%), Positives = 62/106 (58%)

Query:    14 GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
             G L+EF V   +    +P  ++  + + LP   LTA  A+ +  G+  D + + K +L+ 
Sbjct:   153 GTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLN-DKNCRGKRVLIL 211

Query:    74 AASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKT 119
              ASGGVG +A+Q+ K  + HVTA C     E V+ LGAD+V+DYK+
Sbjct:   212 GASGGVGTFAIQVMKAWDAHVTAVCSQDASELVRKLGADDVIDYKS 257

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

TIGR_CMR|BA_3435 BA_3435 "alcohol dehydrogenase, zinc-containing" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 74/239 (30%), Positives = 116/239 (48%)

Query:     6 RIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSG 65
             R D+  NG   AE+    E     +P  +S  E + +P+ GLT+ Q+L + A V+    G
Sbjct:    90 RPDIERNGT-YAEYVAVDEKYVAKKPRNLSFEEAASIPLVGLTSWQSLVKFANVQ---KG 145

Query:    66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAAL 125
              +  +L+ A SGG+G +A+QLAK    HV  +   +N++FVK LGAD V+DYKT D + L
Sbjct:   146 NK--VLIHAGSGGIGTFAIQLAKSFGAHVATTTSTKNMQFVKDLGADTVVDYKTEDFSLL 203

Query:   126 KSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVP 185
                    Y+ V     G         L  NGK+  I  GP  M    + +   S+++ + 
Sbjct:   204 L----HNYNIVFDVLGGDVLKDSYKVLAPNGKLASIY-GPKGM---EIPQTEISREKNIE 255

Query:   186 ---LLLIPKRENLDFLVKLVKEGKLKTVINSKHPL--SKAEDAWAESIDGHATGKIIVE 239
                +   P    L  + +L++ GK+K V+    PL     + A   S    A GKI+++
Sbjct:   256 SDHIFTEPNGYELSLITELIEGGKIKPVVTHVLPLHVEGVKKAHHISESERARGKIVLK 314

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISS

GO:0006113 "fermentation" evidence=ISS

UNIPROTKB|Q8WWV3 RTN4IP1 "Reticulon-4-interacting protein 1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 193 (73.0 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
 Identities = 40/106 (37%), Positives = 61/106 (57%)

Query:    14 GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
             G L+EF V   +    +P  ++  + + LP   LTA  A+ +  G+  D +   K +L+ 
Sbjct:   153 GTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLN-DKNCTGKRVLIL 211

Query:    74 AASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKT 119
              ASGGVG +A+Q+ K  + HVTA C     E V+ LGAD+V+DYK+
Sbjct:   212 GASGGVGTFAIQVMKAWDAHVTAVCSQDASELVRKLGADDVIDYKS 257

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SV68	QORH_ARATH	1, ., -, ., -, ., -	0.8111	0.9666	0.7051	yes	no
Q8H0M1	QORH_SPIOL	1, ., -, ., -, ., -	0.7768	0.9666	0.7051	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_scaffold_5686000001	hypothetical protein (229 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.VIII.2448.1	Putative uncharacterized protein (303 aa)			•						0.428

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	240
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	2e-82
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	2e-53
cd08248	350	cd08248, RTN4I1, Human Reticulon 4 Interacting Pro	1e-40
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	9e-40
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	2e-34
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	2e-31
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	5e-29
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	1e-27
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	2e-27
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	1e-26
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	1e-25
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	4e-25
cd08274	350	cd08274, MDR9, Medium chain dehydrogenases/reducta	9e-24
cd08250	329	cd08250, Mgc45594_like, Mgc45594 gene product and	5e-23
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	5e-23
cd08275	337	cd08275, MDR3, Medium chain dehydrogenases/reducta	2e-20
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	2e-20
pfam13602	129	pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenas	6e-20
TIGR02824	325	TIGR02824, quinone_pig3, putative NAD(P)H quinone	4e-19
cd08247	352	cd08247, AST1_like, AST1 is a cytoplasmic protein	1e-18
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	2e-18
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	3e-18
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	4e-18
cd08252	336	cd08252, AL_MDR, Arginate lyase and other MDR fami	9e-18
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	2e-17
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	4e-17
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	1e-16
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	1e-16
smart00829	287	smart00829, PKS_ER, Enoylreductase	1e-16
cd08251	303	cd08251, polyketide_synthase, polyketide synthase	4e-16
TIGR02817	336	TIGR02817, adh_fam_1, zinc-binding alcohol dehydro	8e-15
cd05288	329	cd05288, PGDH, Prostaglandin dehydrogenases	1e-14
cd05280	325	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putativ	3e-14
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	3e-14
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	5e-14
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	6e-14
cd08270	305	cd08270, MDR4, Medium chain dehydrogenases/reducta	9e-14
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	2e-13
cd08288	324	cd08288, MDR_yhdh, Yhdh putative quinone oxidoredu	2e-13
cd08289	326	cd08289, MDR_yhfp_like, Yhfp putative quinone oxid	3e-13
COG2130	340	COG2130, COG2130, Putative NADP-dependent oxidored	3e-13
TIGR02823	323	TIGR02823, oxido_YhdH, putative quinone oxidoreduc	5e-13
cd08244	324	cd08244, MDR_enoyl_red, Possible enoyl reductase	1e-12
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	6e-12
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	9e-12
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	2e-10
TIGR01751	398	TIGR01751, crot-CoA-red, crotonyl-CoA reductase	2e-10
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	4e-10
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	1e-09
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	4e-09
cd08246	393	cd08246, crotonyl_coA_red, crotonyl-CoA reductase	5e-09
cd08294	329	cd08294, leukotriene_B4_DH_like, 13-PGR is a bifun	1e-08
cd08290	341	cd08290, ETR, 2-enoyl thioester reductase (ETR)	3e-08
cd08243	320	cd08243, quinone_oxidoreductase_like_1, Quinone ox	3e-08
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	1e-07
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	1e-07
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	3e-07
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	1e-06
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	3e-06
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	3e-06
TIGR02825	325	TIGR02825, B4_12hDH, leukotriene B4 12-hydroxydehy	6e-06
PLN03154	348	PLN03154, PLN03154, putative allyl alcohol dehydro	6e-06
PLN02514	357	PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase	9e-06
cd08295	338	cd08295, double_bond_reductase_like, Arabidopsis a	2e-05
PRK10309	347	PRK10309, PRK10309, galactitol-1-phosphate dehydro	2e-05
PRK09422	338	PRK09422, PRK09422, ethanol-active dehydrogenase/a	3e-05
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	1e-04
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	1e-04
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	6e-04
TIGR03201	349	TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1	8e-04
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	0.002
PLN02586	360	PLN02586, PLN02586, probable cinnamyl alcohol dehy	0.004

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  248 bits (636), Expect = 2e-82
 Identities = 98/233 (42%), Positives = 129/233 (55%), Gaps = 11/233 (4%)

Query: 11  HNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNI 70
             GG LAE+ VA ES    +P  VS  E + LPVAGLTA QAL  +  VK    GQ   +
Sbjct: 93  KGGGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVK---PGQ--RV 147

Query: 71  LVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSG 130
           L+  ASGGVG +AVQ+AK    HVT  C  RN E V+SLGADEV+DY T D  AL +  G
Sbjct: 148 LINGASGGVGTFAVQIAKALGAHVTGVCSTRNAELVRSLGADEVIDYTTEDFVAL-TAGG 206

Query: 131 RKYDAVIHCATGIPWSTFE--PNLGTNGKVIDITPGPSAMLT---FALKKLTFSKKQLVP 185
            KYD +       P+S +     L   G+ + +  GPS +L         L    ++L  
Sbjct: 207 EKYDVIFDAVGNSPFSLYRASLALKPGGRYVSVGGGPSGLLLVLLLLPLTLGGGGRRLKF 266

Query: 186 LLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIV 238
            L  P  E+L+ L +LV+EGKLK VI+S +PL  A +A+     G A GK+++
Sbjct: 267 FLAKPNAEDLEQLAELVEEGKLKPVIDSVYPLEDAPEAYRRLKSGRARGKVVI 319

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score =  174 bits (443), Expect = 2e-53
 Identities = 80/229 (34%), Positives = 117/229 (51%), Gaps = 18/229 (7%)

Query: 13  GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILV 72
           GG  AE+ V        +P+ +S  E + LP+AGLTA QAL +  G+K   +GQ   +L+
Sbjct: 96  GGAYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQALFELGGLK---AGQ--TVLI 150

Query: 73  TAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRK 132
             A+GGVG +AVQLAK     V A+  A N +F++SLGADEV+DY   D     +P G  
Sbjct: 151 HGAAGGVGSFAVQLAKARGARVIATASAANADFLRSLGADEVIDYTKGDFERAAAPGG-- 208

Query: 133 YDAVIHCATGIPWSTFEPNLGT---NGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLI 189
            DAV+    G    T   +L      G+++ I   P A      + +         + + 
Sbjct: 209 VDAVLDTVGG---ETLARSLALVKPGGRLVSIAGPPPAEQAAKRRGVRAG-----FVFVE 260

Query: 190 PKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIV 238
           P  E L  L +LV+ GKL+ V++   PL  A +A      GHA GK+++
Sbjct: 261 PDGEQLAELAELVEAGKLRPVVDRVFPLEDAAEAHERLESGHARGKVVL 309

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1

 Score =  141 bits (359), Expect = 1e-40
 Identities = 78/243 (32%), Positives = 112/243 (46%), Gaps = 22/243 (9%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           G  AE+ V  E+    +P  +S  E + LP AGLTA  AL    G+    +   K +L+ 
Sbjct: 111 GTHAEYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNA-AGKRVLIL 169

Query: 74  AASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKY 133
             SGGVG +A+QL K    HVT +C    I  VKSLGAD+V+DY   D     +  G K+
Sbjct: 170 GGSGGVGTFAIQLLKAWGAHVTTTCSTDAIPLVKSLGADDVIDYNNEDFEEELTERG-KF 228

Query: 134 DAVIHCATG--IPWSTFEPNLGTNGKVIDITP---------G-PSAMLTFALKKLTFSKK 181
           D ++    G    W+     L   G  + +           G    ML  A+  L  + K
Sbjct: 229 DVILDTVGGDTEKWAL--KLLKKGGTYVTLVSPLLKNTDKLGLVGGMLKSAVDLLKKNVK 286

Query: 182 QLVPLLLI------PKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGK 235
            L+           P    LD L KLV++GK+K VI+   P  +  +A+ +   GHA GK
Sbjct: 287 SLLKGSHYRWGFFSPSGSALDELAKLVEDGKIKPVIDKVFPFEEVPEAYEKVESGHARGK 346

Query: 236 IIV 238
            ++
Sbjct: 347 TVI 349

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 350

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score =  139 bits (351), Expect = 9e-40
 Identities = 80/240 (33%), Positives = 117/240 (48%), Gaps = 21/240 (8%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           GG AE+ V      V  P  +S  E + LP+AGLTA  AL   AG+K   +     +LV 
Sbjct: 95  GGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGET-----VLVH 149

Query: 74  AASGGVGHYAVQLAK-LGNTHVTASCGARNIEFVKSLGADEVLDYKTPD-GAALKSPS-G 130
            A+GGVG  A+QLAK LG T V     +  +E +K LGAD V++Y+  D    ++  + G
Sbjct: 150 GAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGG 209

Query: 131 RKYDAVIHCATGIPWSTFEPN---LGTNGKVIDI------TPGPSAMLTFALKKLTFSKK 181
           +  D V+    G    TF  +   L   G+++ I       P P  +L    K+LT    
Sbjct: 210 KGVDVVLDTVGG---DTFAASLAALAPGGRLVSIGALSGGPPVPLNLLPLLGKRLTLRGV 266

Query: 182 QLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESI-DGHATGKIIVEP 240
            L         E L  L  L+  GKLK VI+  +PL++A  A A  + +   TGK++++ 
Sbjct: 267 TLGSRDPEALAEALAELFDLLASGKLKPVIDRVYPLAEAPAAAAHLLLERRTTGKVVLKV 326

Length = 326

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  125 bits (316), Expect = 2e-34
 Identities = 80/241 (33%), Positives = 113/241 (46%), Gaps = 21/241 (8%)

Query: 12  NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNIL 71
            GG  AE+ V    + +  P  +S  E + LP AGLTA+QAL +    KL     +  IL
Sbjct: 92  RGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFK----KLRIEAGR-TIL 146

Query: 72  VTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPD--GAALKSPS 129
           +T  +GGVG +AVQLAK     V  +C  RN E+VKSLGAD V+DY   D      +   
Sbjct: 147 ITGGAGGVGSFAVQLAKRAGLRVITTCSKRNFEYVKSLGADHVIDYNDEDVCERIKEITG 206

Query: 130 GRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSA----MLTFALKKLTFSKKQLVP 185
           GR  DAV+    G   +   P L  NG ++ I   P A      T A   L+  +  L  
Sbjct: 207 GRGVDAVLDTVGGETAAALAPTLAFNGHLVCIQGRPDASPDPPFTRA---LSVHEVALGA 263

Query: 186 LLLIP---KRENL----DFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIV 238
                     ++L    + L++L+  GKL+ ++    P  +  +A     D H  GKI+V
Sbjct: 264 AHDHGDPAAWQDLRYAGEELLELLAAGKLEPLVIEVLPFEQLPEALRALKDRHTRGKIVV 323

Query: 239 E 239
            
Sbjct: 324 T 324

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  117 bits (295), Expect = 2e-31
 Identities = 74/238 (31%), Positives = 116/238 (48%), Gaps = 19/238 (7%)

Query: 13  GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILV 72
            G LAE+AV        +P+ +S  E + LP+ G+TA + L   A V+   +GQ   +L+
Sbjct: 96  QGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAVQ---AGQT--VLI 150

Query: 73  TAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYK-TPDGAALKSPSGR 131
              +GGVGH AVQLAK     V A+  +    F +SLGAD ++ Y+ T      +   GR
Sbjct: 151 HGGAGGVGHVAVQLAKAAGARVYATASSEKAAFARSLGADPIIYYRETVVEYVAEHTGGR 210

Query: 132 KYDAVIHCATGIPWSTFE---PNLGTNGKVIDITPGPSAMLTFA-LKKLTFSKKQ-LVPL 186
            +D V     G    T +     +   G+V+ I  G +  L     +  T+S    L+PL
Sbjct: 211 GFDVVFDTVGG---ETLDASFEAVALYGRVVSILGGATHDLAPLSFRNATYSGVFTLLPL 267

Query: 187 LLIPKREN----LDFLVKLVKEGKLKTVINSKH-PLSKAEDAWAESIDGHATGKIIVE 239
           L    R +    L    +LV+ G+L+ +++ +  PL +A  A A    G A GKI+++
Sbjct: 268 LTGEGRAHHGEILREAARLVERGQLRPLLDPRTFPLEEAAAAHARLESGSARGKIVID 325

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score =  110 bits (278), Expect = 5e-29
 Identities = 65/235 (27%), Positives = 105/235 (44%), Gaps = 14/235 (5%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           G  AE+ V      V  P  VS  +G+ L +  LTA++AL   AG K       + +LV 
Sbjct: 97  GTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAG-----ETVLVH 151

Query: 74  AASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPDGAA--LKSPSG 130
             SG VGH AVQLA+     V A+   A   E V+  GAD V +Y+  D A   L + +G
Sbjct: 152 GGSGAVGHAAVQLARWAGARVIATASSAEGAELVRQAGADAVFNYRAEDLADRILAATAG 211

Query: 131 RKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLI- 189
           +  D +I     +  +     L   G+++ +        T  +  L   +  +  +LL  
Sbjct: 212 QGVDVIIEVLANVNLAKDLDVLAPGGRIV-VYGSGGLRGTIPINPLMAKEASIRGVLLYT 270

Query: 190 ----PKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP 240
                +    + +   + +G L+ VI  ++PL +A  A      G A GK++++P
Sbjct: 271 ATPEERAAAAEAIAAGLADGALRPVIAREYPLEEAAAAHEAVESGGAIGKVVLDP 325

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score =  107 bits (269), Expect = 1e-27
 Identities = 79/257 (30%), Positives = 121/257 (47%), Gaps = 40/257 (15%)

Query: 6   RIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSG 65
           R+      GG AE  V   ++    P  +S  E + LPV   TA+ AL + A ++    G
Sbjct: 84  RVVALTGQGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQ---PG 140

Query: 66  QQKNILVTAASGGVGHYAVQLAK-LGNTHVTASCGARNIEFVKSLGADEVLDYKTPD-GA 123
           +   +LV  A+GGVG  AVQLAK LG   + A+     +   ++LGAD V+DY+ PD   
Sbjct: 141 E--TVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARALGADHVIDYRDPDLRE 198

Query: 124 ALKSPSGRK-----YDAVIHCATGIPWSTFEPNLGT---NGK--VIDITPG--PSAMLTF 171
            +K+ +G +     YD V     G     FE +L +    G+  VI    G  P      
Sbjct: 199 RVKALTGGRGVDVVYDPV-----GGD--VFEASLRSLAWGGRLLVIGFASGEIPQIPANL 251

Query: 172 ALKK---------LTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAED 222
            L K           +++++  P LL   R NL  L  L+ EGK++  +++  PL +A +
Sbjct: 252 LLLKNISVVGVYWGAYARRE--PELL---RANLAELFDLLAEGKIRPHVSAVFPLEQAAE 306

Query: 223 AWAESIDGHATGKIIVE 239
           A     D  ATGK+++ 
Sbjct: 307 ALRALADRKATGKVVLT 323

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score =  106 bits (268), Expect = 2e-27
 Identities = 68/250 (27%), Positives = 104/250 (41%), Gaps = 30/250 (12%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLD-----GSGQQK 68
           G   E+ VA    T   P  +S  E + LPV  +TA  AL Q  G+ L       + + K
Sbjct: 97  GAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGK 156

Query: 69  NILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPD-GAALKS 127
            +L+   S  VG  A+QLAKL    V  +   +N + VKSLGAD V DY  PD    +++
Sbjct: 157 PVLIWGGSSSVGTLAIQLAKLAGYKVITTASPKNFDLVKSLGADAVFDYHDPDVVEDIRA 216

Query: 128 PSGRKYDAVIHCATGIPWSTF-----EPNLGTNGKVIDITPGPSAMLTFALKK----LTF 178
            +G K    + C +    +         + G  GK++ + P P         K    L +
Sbjct: 217 ATGGKLRYALDCISTPESAQLCAEALGRSGG--GKLVSLLPVPEETEPRKGVKVKFVLGY 274

Query: 179 SKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHP-------LSKAEDAWAESIDGH 231
           +    +P           +L +L++EGKLK      HP       L   ++       G 
Sbjct: 275 TVFGEIPEDREFGEVFWKYLPELLEEGKLKP-----HPVRVVEGGLEGVQEGLDLLRKGK 329

Query: 232 ATG-KIIVEP 240
            +G K++V  
Sbjct: 330 VSGEKLVVRL 339

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score =  104 bits (261), Expect = 1e-26
 Identities = 68/249 (27%), Positives = 106/249 (42%), Gaps = 37/249 (14%)

Query: 12  NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNIL 71
            GGG AE+ V      +  P  +S  E + LP    TA Q L Q  G+K   +G+   +L
Sbjct: 90  AGGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLK---AGE--TVL 144

Query: 72  VTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPDGAA--LKSP 128
           +   + GVG  A+QLAK     V A+ G    +E  ++LGAD  ++Y+T D A    ++ 
Sbjct: 145 IHGGASGVGTAAIQLAKALGARVIATAGSEEKLEACRALGADVAINYRTEDFAEEVKEAT 204

Query: 129 SGRKYDAVIHCATGIPWSTFEPN---LGTNGKVIDITP--GPSAMLTFAL---KKLTFS- 179
            GR  D ++    G        N   L  +G+++ I    G  A L  A    K+LT + 
Sbjct: 205 GGRGVDVILDMVGG---DYLARNLRALAPDGRLVLIGLLGGAKAELDLAPLLRKRLTLTG 261

Query: 180 ----------KKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESID 229
                     K  L            + +  L   G+++ VI+   PL +A +A      
Sbjct: 262 STLRSRSLEEKAALA-------AAFREHVWPLFASGRIRPVIDKVFPLEEAAEAHRRMES 314

Query: 230 GHATGKIIV 238
               GKI++
Sbjct: 315 NEHIGKIVL 323

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score =  102 bits (256), Expect = 1e-25
 Identities = 63/230 (27%), Positives = 97/230 (42%), Gaps = 15/230 (6%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           GG AE+ V      V  P  +  AE + L  AG+T ++AL + A VK    G+   + V 
Sbjct: 120 GGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRALKK-ANVK---PGKW--VAVV 173

Query: 74  AASGGVGHYAVQLAKLGNTHVTA-SCGARNIEFVKSLGADEVLDYKTPD-GAALKSPSGR 131
            A GG+GH AVQ AK     V A +     +E  K LGAD V++    D   A+K     
Sbjct: 174 GA-GGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVK----E 228

Query: 132 KYDAVIHCATGIPWSTFEPNLGTNGKVIDI-TPGPSAMLTFALKKLTFSKKQLVPLLLIP 190
             DA+I              L   G ++ +  PG   +       L   +  +V  L+  
Sbjct: 229 IADAIIDTVGPATLEPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGT 288

Query: 191 KRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP 240
           + +  + L     EGK+K  I    PL +  +A+     G   G+ +++ 
Sbjct: 289 RADLEEAL-DFAAEGKIKPEILETIPLDEINEAYERMEKGKVRGRAVIDM 337

Length = 339

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 99.3 bits (248), Expect = 4e-25
 Identities = 54/204 (26%), Positives = 82/204 (40%), Gaps = 10/204 (4%)

Query: 2   CNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKL 61
           C    I      GG AE+ V    + V  P  +S  E + LP    TA+ AL ++  +K 
Sbjct: 75  CPGGGILGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKP 134

Query: 62  DGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTP 120
                   +LV  A GGVG  A QLAK     V  +      +E  K LGAD V+DYK  
Sbjct: 135 G-----DTVLVLGA-GGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEE 188

Query: 121 D-GAALKSPSGRKYDAVIHCATGIP-WSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTF 178
           D    L+   G   D VI    G    +     L   G+++ +           L++L F
Sbjct: 189 DLEEELRLTGGGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTSGGPPLDDLRRLLF 248

Query: 179 SKKQLVPLLLIPKRENLDFLVKLV 202
            +  ++      + +  +  + L+
Sbjct: 249 KELTIIGSTGGTRED-FEEALDLL 271

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 97.0 bits (242), Expect = 9e-24
 Identities = 76/232 (32%), Positives = 105/232 (45%), Gaps = 17/232 (7%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           GG AE+ V    +     S +S  E +  P +  TA   L + AGV   G+G+   +LVT
Sbjct: 131 GGFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENMLER-AGV---GAGET--VLVT 184

Query: 74  AASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKY 133
            ASGGVG   VQLAK     V A  GA   E V++LGAD V+    P  A  K+  G   
Sbjct: 185 GASGGVGSALVQLAKRRGAIVIAVAGAAKEEAVRALGADTVILRDAPLLADAKALGGEPV 244

Query: 134 DAVIHCATGIPWSTFEPNLGTNGK--VIDITPGPSAML---TFALKKLTFSKKQLVPLLL 188
           D V     G  +      L   G+        GP   L   T  LK LT     L     
Sbjct: 245 DVVADVVGGPLFPDLLRLLRPGGRYVTAGAIAGPVVELDLRTLYLKDLTLFGSTLGT--- 301

Query: 189 IPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP 240
              RE    LV+ ++EG+++ V+    PLS+  +A AE ++    GK+++ P
Sbjct: 302 ---REVFRRLVRYIEEGEIRPVVAKTFPLSEIREAQAEFLEKRHVGKLVLVP 350

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350

>gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members

 Score = 94.6 bits (236), Expect = 5e-23
 Identities = 80/247 (32%), Positives = 116/247 (46%), Gaps = 28/247 (11%)

Query: 12  NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNIL 71
           + G  AE+ V      V  P      E   L V+GLTA  AL +   +K   SG  + +L
Sbjct: 92  SFGAFAEYQVVPARHAVPVPE--LKPEVLPLLVSGLTASIALEEVGEMK---SG--ETVL 144

Query: 72  VTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPD-GAALKSPS 129
           VTAA+GG G +AVQLAKL   HV  +C +    EF+KSLG D  ++YKT D G  LK   
Sbjct: 145 VTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLKSLGCDRPINYKTEDLGEVLKKEY 204

Query: 130 GRKYDAVIHCATGIPWSTFEPNLGTNGKVIDI--------TPGPSAMLTFALKKLTFSKK 181
            +  D V     G  + T   NL   G++I I          GPS +    L     +K 
Sbjct: 205 PKGVDVVYESVGGEMFDTCVDNLALKGRLIVIGFISGYQSGTGPSPVKGATLPPKLLAKS 264

Query: 182 QLVPLLLIPK-----RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESID----GHA 232
             V    +P       ++LD L++L + GKL   ++      +  ++ A+++D    G  
Sbjct: 265 ASVRGFFLPHYAKLIPQHLDRLLQLYQRGKLVCEVDPTR--FRGLESVADAVDYLYSGKN 322

Query: 233 TGKIIVE 239
            GK++VE
Sbjct: 323 IGKVVVE 329

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score = 95.0 bits (237), Expect = 5e-23
 Identities = 72/245 (29%), Positives = 110/245 (44%), Gaps = 13/245 (5%)

Query: 1   MCNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVK 60
           +C  + I   H  GG AE+      + +  P  +S  E +  P+  LTA   L   A ++
Sbjct: 106 LCAQYGILGEHVDGGYAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLTAWHMLVTRARLR 165

Query: 61  LDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKT 119
               G+   +LV  A  GVG  A+Q+AKL    V A+ G    +E  K LGAD V+DY+ 
Sbjct: 166 ---PGET--VLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKELGADYVIDYRK 220

Query: 120 PD--GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDI--TPGPSAMLTFALKK 175
            D      +    R  D V+       W     +L   G+++    T G  A     L+ 
Sbjct: 221 EDFVREVRELTGKRGVDVVVEHVGAATWEKSLKSLARGGRLVTCGATTGYEA--PIDLRH 278

Query: 176 LTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGK 235
           + + +  ++   +  K E LD  ++LV  GKLK VI+S  PL +A +A          GK
Sbjct: 279 VFWRQLSILGSTMGTKAE-LDEALRLVFRGKLKPVIDSVFPLEEAAEAHRRLESREQFGK 337

Query: 236 IIVEP 240
           I++ P
Sbjct: 338 IVLTP 342

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 88.0 bits (219), Expect = 2e-20
 Identities = 67/256 (26%), Positives = 107/256 (41%), Gaps = 34/256 (13%)

Query: 12  NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNIL 71
             GG AE            P  +S  E +  PV  LTA+ AL +   ++       +++L
Sbjct: 89  RFGGYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNLRPG-----QSVL 143

Query: 72  VTAASGGVGHYAVQLAK-LGNTHVTASCGARNIEFVKSLGADEVLDYKTPD-GAALKSPS 129
           V +A+GGVG  A QL K + N  V  +  A   E +K  G   V+DY+T D    +K  S
Sbjct: 144 VHSAAGGVGLAAGQLCKTVPNVTVVGTASASKHEALKENGVTHVIDYRTQDYVEEVKKIS 203

Query: 130 GRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLT------FALKKLTFSKKQL 183
               D V+    G         L   G+++    G + ++T      F L K  +++ ++
Sbjct: 204 PEGVDIVLDALGGEDTRKSYDLLKPMGRLVVY--GAANLVTGEKRSWFKLAKKWWNRPKV 261

Query: 184 VPLLLIP-------------------KRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAW 224
            P+ LI                      E +D L+KL +EGK+K  I+S  P  +  +A 
Sbjct: 262 DPMKLISENKSVLGFNLGWLFEERELLTEVMDKLLKLYEEGKIKPKIDSVFPFEEVGEAM 321

Query: 225 AESIDGHATGKIIVEP 240
                    GK+++ P
Sbjct: 322 RRLQSRKNIGKVVLTP 337

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 87.7 bits (218), Expect = 2e-20
 Identities = 64/243 (26%), Positives = 103/243 (42%), Gaps = 19/243 (7%)

Query: 10  SHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKN 69
               G  AE+A+   ++ V  P  +S  E + L +  LTA+ AL + AG++    G    
Sbjct: 93  LGQYGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLR---PGDS-- 147

Query: 70  ILVTAASGGVGHYAVQLAKLGNTHVTASC-GARNIEFVKSLGADEVLDYKTPD--GAALK 126
           +L+TAAS  VG  A+Q+A      V A+   +   + + +LGA  V+     D     L+
Sbjct: 148 VLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDALLALGAAHVIVTDEEDLVAEVLR 207

Query: 127 SPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVI-------DITPGPSAMLTFALKKLTFS 179
              G+  D V     G  ++     L   G ++       + TP P  +     K LTF 
Sbjct: 208 ITGGKGVDVVFDPVGGPQFAKLADALAPGGTLVVYGALSGEPTPFP--LKAALKKSLTFR 265

Query: 180 KKQLVPLLLIPKREN--LDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKII 237
              L  + L P+     + F++  +  G LK V++   P     +A      G   GKI+
Sbjct: 266 GYSLDEITLDPEARRRAIAFILDGLASGALKPVVDRVFPFDDIVEAHRYLESGQQIGKIV 325

Query: 238 VEP 240
           V P
Sbjct: 326 VTP 328

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|222256 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase

 Score = 82.0 bits (203), Expect = 6e-20
 Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 9/134 (6%)

Query: 109 LGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGT---NGKVIDI-TPG 164
           LGADEV+DY T D     +  G   D V+    G    T    L      G+++ I  P 
Sbjct: 1   LGADEVIDYTTEDFEEATAGEG--VDVVLDTVGG---ETLLRALLALKPGGRLVSIGGPD 55

Query: 165 PSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAW 224
               +             L P+       +L  L +LV+ GKL+ VI+   PL +A +A 
Sbjct: 56  LLLSVAAKAGGRGVRGVFLFPVSPGEAGADLAELAELVEAGKLRPVIDRVFPLEEAAEAH 115

Query: 225 AESIDGHATGKIIV 238
                G A GK+++
Sbjct: 116 RYLESGRARGKVVL 129

Length = 129

>gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family

 Score = 84.2 bits (209), Expect = 4e-19
 Identities = 62/243 (25%), Positives = 98/243 (40%), Gaps = 23/243 (9%)

Query: 12  NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNIL 71
            GGG AE+        +  P  +S  E + LP    T    L Q  G+K   +G+   +L
Sbjct: 90  AGGGYAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGGLK---AGE--TVL 144

Query: 72  VTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPDGAA--LKSP 128
           +   + G+G  A+QLAK     V  + G        ++LGAD  ++Y+  D         
Sbjct: 145 IHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCAACEALGADIAINYREEDFVEVVKAET 204

Query: 129 SGRKYDAVIHCATGIPWSTFEPN---LGTNGKVIDIT--PGPSAMLTFA---LKKLTFSK 180
            G+  D ++    G   S    N   L  +G+++ I    G  A L       K+LT + 
Sbjct: 205 GGKGVDVILDIVGG---SYLNRNIKALALDGRIVQIGFQGGRKAELDLGPLLAKRLTITG 261

Query: 181 KQLVPLLLIPKRENLDFLVK----LVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKI 236
             L    +  K      L +    L+  G+++ VI+   PL  A  A A    G   GKI
Sbjct: 262 STLRARPVAEKAAIAAELREHVWPLLASGRVRPVIDKVFPLEDAAQAHALMESGDHIGKI 321

Query: 237 IVE 239
           ++ 
Sbjct: 322 VLT 324

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325

>gnl|CDD|176209 cd08247, AST1_like, AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

 Score = 83.1 bits (206), Expect = 1e-18
 Identities = 64/241 (26%), Positives = 96/241 (39%), Gaps = 31/241 (12%)

Query: 26  STVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQ 85
           S   +P  +S  E +  P+   TA+Q L    G KL   G    +LV   S  VG +A+Q
Sbjct: 115 SITRKPENISLEEAAAWPLVLGTAYQILE-DLGQKL---GPDSKVLVLGGSTSVGRFAIQ 170

Query: 86  LAK-LGNTH-VTASCGARNIEFVKSLGADEVLDYKTPDGAALKSP------SGRKYDAVI 137
           LAK   N   V  +C +R+ E  K LGAD  +DY    G  L  P         K+D ++
Sbjct: 171 LAKNHYNIGTVVGTCSSRSAELNKKLGADHFIDYDAHSGVKLLKPVLENVKGQGKFDLIL 230

Query: 138 HCATG---IPWST-FEPNLGTNGKVIDIT---------------PGPSAMLTFALKKLTF 178
            C  G    P           NG  + I                  PSA        L  
Sbjct: 231 DCVGGYDLFPHINSILKPKSKNGHYVTIVGDYKANYKKDTFNSWDNPSANARKLFGSLGL 290

Query: 179 SKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIV 238
                   LL P  + ++   +L+ +GK+K  I+S +P    ++A+       A GK+++
Sbjct: 291 WSYNYQFFLLDPNADWIEKCAELIADGKVKPPIDSVYPFEDYKEAFERLKSNRAKGKVVI 350

Query: 239 E 239
           +
Sbjct: 351 K 351

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 352

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 82.4 bits (204), Expect = 2e-18
 Identities = 63/247 (25%), Positives = 107/247 (43%), Gaps = 33/247 (13%)

Query: 13  GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILV 72
           GGG AE+AVA +   +  P   +  E + +P A LTA Q L +   VK    GQ  ++L+
Sbjct: 92  GGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVK---KGQ--SVLI 146

Query: 73  TAASGGVGHYAVQLAKLGNTH-VTASCGARNIEFVKSLGADEVLDYKTPDGAA--LKSPS 129
            A + GVG  A QLA+      +  +     ++F K L A  ++ Y   +G A  +K  +
Sbjct: 147 HAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKKLAAIILIRYPDEEGFAPKVKKLT 206

Query: 130 GRK-YDAVIHCATGIPWSTFEPNLGTNGKVIDI-------TPGPSAMLTFALK-KLTFS- 179
           G K  + V+ C  G   S     L  +GK I             + +     +  + FS 
Sbjct: 207 GEKGVNLVLDCVGGSYLSETAEVLAVDGKWIVYGFMGGAKVEKFNLLPLLRKRASIIFST 266

Query: 180 --------KKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGH 231
                   K  LV      +RE    ++  ++EG++K +++  +PL +  +A        
Sbjct: 267 LRSRSDEYKADLVASF---ERE----VLPYMEEGEIKPIVDRTYPLEEVAEAHTFLEQNK 319

Query: 232 ATGKIIV 238
             GK+++
Sbjct: 320 NIGKVVL 326

Length = 334

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 81.8 bits (203), Expect = 3e-18
 Identities = 69/251 (27%), Positives = 109/251 (43%), Gaps = 53/251 (21%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           G LAE+ V  E   V  P  +S  E + LP AGLTA  AL     +K    G     ++ 
Sbjct: 113 GVLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPLK---PGD---TVLV 166

Query: 74  AASGGVGHYAVQLAKLGNTHVTASCGARNI---------EFVKSLGADEVLDYKT-PD-- 121
             +GGV  +A+Q AK          GAR I         E  K+LGAD V++Y+T PD  
Sbjct: 167 QGTGGVSLFALQFAKA--------AGARVIATSSSDEKLERAKALGADHVINYRTTPDWG 218

Query: 122 GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVID-ITP-GPSAMLTFALKKLTFS 179
              LK   GR  D V+    G          GT  + I  + P G  +++ F    L+  
Sbjct: 219 EEVLKLTGGRGVDHVVE-VGGP---------GTLAQSIKAVAPGGVISLIGF----LSGF 264

Query: 180 KKQLVPLLLIPK-----------RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESI 228
           +  ++ L L+ K           R   + + + ++  +++ VI+   P  +A++A+    
Sbjct: 265 EAPVLLLPLLTKGATLRGIAVGSRAQFEAMNRAIEAHRIRPVIDRVFPFEEAKEAYRYLE 324

Query: 229 DGHATGKIIVE 239
            G   GK+++ 
Sbjct: 325 SGSHFGKVVIR 335

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score = 81.2 bits (201), Expect = 4e-18
 Identities = 76/243 (31%), Positives = 106/243 (43%), Gaps = 45/243 (18%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           GG AE+    E S V  P  VS    +       TA  AL + AGVK         +LVT
Sbjct: 116 GGFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHAL-KRAGVKKG-----DTVLVT 169

Query: 74  AASGGVGHYAVQLAK-LGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRK 132
            A GGVG +A+QLAK LG   +  +     ++ +K LGAD V+D        +K   G  
Sbjct: 170 GAGGGVGIHAIQLAKALGARVIAVTRSPEKLKILKELGADYVIDGSKF-SEDVKKLGG-- 226

Query: 133 YDAVIHCATGIPWSTFEPN---LGTNGKVIDI---TPGPSAMLTFALKKLTFSKKQLVPL 186
            D VI    G P  T E +   L   G+++ I   TP P+                L P 
Sbjct: 227 ADVVIEL-VGSP--TIEESLRSLNKGGRLVLIGNVTPDPA---------------PLRPG 268

Query: 187 LLIPK-----------RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGK 235
           LLI K           + +++  +KLVKEGK+K VI+    L    +A  +   G   G+
Sbjct: 269 LLILKEIRIIGSISATKADVEEALKLVKEGKIKPVIDRVVSLEDINEALEDLKSGKVVGR 328

Query: 236 IIV 238
           I++
Sbjct: 329 IVL 331

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members

 Score = 80.3 bits (199), Expect = 9e-18
 Identities = 69/243 (28%), Positives = 100/243 (41%), Gaps = 47/243 (19%)

Query: 28  VAR-PSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQL 86
           V   P  +S AE + LP+  LTA +AL    G+  D   + K +L+   +GGVG  A+QL
Sbjct: 110 VGHKPKSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQL 169

Query: 87  AK-LGNTHV--TASCGARN--IEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCA- 140
           AK L    V  TAS   R   I +VK LGAD V+++       L++      D +     
Sbjct: 170 AKQLTGLTVIATAS---RPESIAWVKELGADHVINHHQDLAEQLEALGIEPVDYIFCLTD 226

Query: 141 TGIPWSTFEPNLGTNGKV--IDITPGPSAMLTFALKKLTFS---------------KKQL 183
           T   W      +   G +  I     P  +     K  +F                 +Q 
Sbjct: 227 TDQHWDAMAELIAPQGHICLIVDPQEPLDLGPLKSKSASFHWEFMFTRSMFQTPDMIEQ- 285

Query: 184 VPLLLIPKRENLDFLVKLVKEGKLKT-------VINSKHPLSKAEDAWAESIDGHATGKI 236
                    E L+ +  L+  GKLKT        IN+++ L +A  A  ES  G   GKI
Sbjct: 286 --------HEILNEVADLLDAGKLKTTLTETLGPINAEN-LREAH-ALLES--GKTIGKI 333

Query: 237 IVE 239
           ++E
Sbjct: 334 VLE 336

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 336

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 79.7 bits (197), Expect = 2e-17
 Identities = 72/229 (31%), Positives = 103/229 (44%), Gaps = 24/229 (10%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           GG AE+ V  E +    P  +S    + LPVA LTA+ AL      K  G G  + ++V 
Sbjct: 116 GGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHAL------KTAGLGPGETVVVF 169

Query: 74  AASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKS-PSGRK 132
            ASG  G +AVQLAK+    V A       +++K  GADEV+DY   D    K     + 
Sbjct: 170 GASGNTGIFAVQLAKMMGAEVIAVSRK---DWLKEFGADEVVDY---DEVEEKVKEITKM 223

Query: 133 YDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLI--- 189
            D VI+      W      LG  G++  +T G    LT    KL  S      + +I   
Sbjct: 224 ADVVINSLGSSFWDLSLSVLGRGGRL--VTFG---TLTGGEVKLDLSDLYSKQISIIGST 278

Query: 190 -PKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKII 237
              R+ L  LVK+ K+ K+K  +     L +A++A  E       G+I+
Sbjct: 279 GGTRKELLELVKIAKDLKVK--VWKTFKLEEAKEALKELFSKERDGRIL 325

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score = 78.0 bits (193), Expect = 4e-17
 Identities = 67/245 (27%), Positives = 107/245 (43%), Gaps = 30/245 (12%)

Query: 13  GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILV 72
            G  A          V  P  +S  E + LPVA LTA+ AL   A ++    G+  ++L+
Sbjct: 60  PGAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQ---KGE--SVLI 114

Query: 73  TAASGGVGHYAVQLAK-LG-NTHVTASCGARNIEFVKSLG--ADEVLDYKTPDGAA--LK 126
            AA+GGVG  A+QLA+ LG     T        EF++ LG   D +   +    A   L+
Sbjct: 115 HAAAGGVGQAAIQLAQHLGAEVFATVG-SEEKREFLRELGGPVDHIFSSRDLSFADGILR 173

Query: 127 SPSGRKYDAVIHCATGIP----WSTFEPNLGTNGKVIDI------TPGPSAMLTFALKKL 176
           +  GR  D V++  +G      W      L   G+ ++I      +     M  F L+ +
Sbjct: 174 ATGGRGVDVVLNSLSGELLRASWRC----LAPFGRFVEIGKRDILSNSKLGMRPF-LRNV 228

Query: 177 TFSKKQLVPLLLIPK---RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHAT 233
           +FS   L  L        RE L  +++L++ G LK +  +  P +   DA+     G   
Sbjct: 229 SFSSVDLDQLARERPELLRELLREVLELLEAGVLKPLPPTVVPSASEIDAFRLMQSGKHI 288

Query: 234 GKIIV 238
           GK+++
Sbjct: 289 GKVVL 293

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 77.3 bits (191), Expect = 1e-16
 Identities = 70/252 (27%), Positives = 108/252 (42%), Gaps = 36/252 (14%)

Query: 13  GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILV 72
            GG AE+        V  P  V AAE   L +  +TA+Q L ++A V    +GQ   +L+
Sbjct: 91  VGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVL---TGQ--RVLI 145

Query: 73  TAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPD-GAALKSPSGR 131
             ASGGVG   ++LA L    V  +   RN   ++ LGA   +DY+T D   A+ +P G 
Sbjct: 146 HGASGGVGQALLELALLAGAEVYGTASERNHAALRELGA-TPIDYRTKDWLPAMLTPGGV 204

Query: 132 KYDAVIHCATGIP-WSTFEPNLGTNGKVIDITPGPSAMLTF---ALKKLTFSKKQLVPLL 187
             D V     G   +      L   G ++    G ++ L     +L  L     +L  L 
Sbjct: 205 --DVVFD-GVGGESYEESYAALAPGGTLVCY--GGNSSLLQGRRSLAALGSLLARLAKLK 259

Query: 188 LIP--------------------KRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAES 227
           L+P                     R++L  L+ L+ +GK++  I  + PLS+  +A    
Sbjct: 260 LLPTGRRATFYYVWRDRAEDPKLFRQDLTELLDLLAKGKIRPKIAKRLPLSEVAEAHRLL 319

Query: 228 IDGHATGKIIVE 239
             G   GKI++ 
Sbjct: 320 ESGKVVGKIVLL 331

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score = 77.1 bits (191), Expect = 1e-16
 Identities = 72/244 (29%), Positives = 102/244 (41%), Gaps = 27/244 (11%)

Query: 13  GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILV 72
            G  AE+ V   S  V  P  +S    + L + GLTAH  L ++  VK    G    +LV
Sbjct: 88  PGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVK---PGDT--VLV 142

Query: 73  TAASGGVGHYAVQLAKLGNTHV--TASCGARNIEFVKSLGADEVLDYKTPDGAA--LKSP 128
            AA+GGVG    Q AK     V  T S      E  ++ GAD V++Y+  D      +  
Sbjct: 143 HAAAGGVGLLLTQWAKALGATVIGTVS-SEEKAELARAAGADHVINYRDEDFVERVREIT 201

Query: 129 SGRKYDAVIHCATGIPWSTFEPNLGT---NGKVIDI-----TPGPSAMLTFALKKLTFSK 180
            GR  D V     G+   TFE +L +    G ++          P  +L  +   L  ++
Sbjct: 202 GGRGVDVVY---DGVGKDTFEGSLDSLRPRGTLVSFGNASGPVPPFDLLRLSKGSLFLTR 258

Query: 181 KQLVPLLLIPKRENLDF----LVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKI 236
             L     I  RE L      L   V  GKLK  I  ++PL+ A  A  +      TGK+
Sbjct: 259 PSLFH--YIATREELLARAAELFDAVASGKLKVEIGKRYPLADAAQAHRDLESRKTTGKL 316

Query: 237 IVEP 240
           ++ P
Sbjct: 317 LLIP 320

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase

 Score = 76.7 bits (190), Expect = 1e-16
 Identities = 66/242 (27%), Positives = 109/242 (45%), Gaps = 27/242 (11%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           G  A   V      V  P   S  E + +PV  LTA+ AL   A ++    G+  ++L+ 
Sbjct: 56  GAFATRVVTDARLVVPIPDGWSFEEAATVPVVFLTAYYALVDLARLR---PGE--SVLIH 110

Query: 74  AASGGVGHYAVQLAKLGNTHVTASCGARN-IEFVKSLG--ADEVLDYKTPDGAA--LKSP 128
           AA+GGVG  A+QLA+     V A+ G+    +F+++LG   D +   +    A   L++ 
Sbjct: 111 AAAGGVGQAAIQLARHLGAEVFATAGSPEKRDFLRALGIPDDHIFSSRDLSFADEILRAT 170

Query: 129 SGRKYDAVIHCATG--IP--WSTFEPNLGTNGKVIDI------TPGPSAMLTFALKKLTF 178
            GR  D V++  +G  +          L   G+ ++I           AM  F    +++
Sbjct: 171 GGRGVDVVLNSLSGEFLDASLRC----LAPGGRFVEIGKRDIRDNSQLAMAPF-RPNVSY 225

Query: 179 SKKQLVPLLLIPKR--ENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKI 236
               L  L   P R  E L  +++L  EG L+ +  +  P+S AEDA+     G   GK+
Sbjct: 226 HAVDLDALEEGPDRIRELLAEVLELFAEGVLRPLPVTVFPISDAEDAFRYMQQGKHIGKV 285

Query: 237 IV 238
           ++
Sbjct: 286 VL 287

Enoylreductase in Polyketide synthases. Length = 287

>gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase

 Score = 75.5 bits (186), Expect = 4e-16
 Identities = 66/236 (27%), Positives = 105/236 (44%), Gaps = 17/236 (7%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           GG A      E   V +P+ +S  E   LPV  LT   A  + AG+      + ++IL+ 
Sbjct: 74  GGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAFAR-AGLA-----KGEHILIQ 127

Query: 74  AASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPDGAA--LKSPSG 130
            A+GG G  AVQLA+L    + A+      +E++K LG   V++Y   D     ++   G
Sbjct: 128 TATGGTGLMAVQLARLKGAEIYATASSDDKLEYLKQLGVPHVINYVEEDFEEEIMRLTGG 187

Query: 131 RKYDAVIHCATGIPWSTFEPNLGTNGKVIDIT-----PGPSAMLTFALKKLTFSKKQLVP 185
           R  D VI+  +G         L   G+ ++I        PS  L+      +F    L  
Sbjct: 188 RGVDVVINTLSGEAIQKGLNCLAPGGRYVEIAMTALKSAPSVDLSVLSNNQSFHSVDLRK 247

Query: 186 LLLIPKRENLDF---LVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIV 238
           LLL+      D+   +V LV+EG+L+  ++   P     +A+    D    GK++V
Sbjct: 248 LLLLDPEFIADYQAEMVSLVEEGELRPTVSRIFPFDDIGEAYRYLSDRENIGKVVV 303

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 303

>gnl|CDD|234024 TIGR02817, adh_fam_1, zinc-binding alcohol dehydrogenase family protein

 Score = 72.1 bits (177), Expect = 8e-15
 Identities = 68/247 (27%), Positives = 112/247 (45%), Gaps = 29/247 (11%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           G  AEF +  E     +P  +S AE + LP+  +TA + L    G+    +G ++ +L+ 
Sbjct: 96  GSNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLII 155

Query: 74  AASGGVGHYAVQLAK-LGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGR 131
             +GGVG   +QLA+ L    V A+     + E+V  LGA  V+D+  P  A L+     
Sbjct: 156 GGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLELGAHHVIDHSKPLKAQLEK---L 212

Query: 132 KYDAVIHCA----TGIPWSTFEPNLGTNGK--VIDITPGPSAMLTFALKKLT------FS 179
             +AV +      T   +      L   G+  +ID  P    +  F  K ++      F+
Sbjct: 213 GLEAVSYVFSLTHTDQHFKEIVELLAPQGRFALID-DPAELDISPFKRKSISLHWEFMFT 271

Query: 180 KKQLVPLLLIPKRENLDFLVKLVKEGKLKT-------VINSKHPLSKAEDAWAESIDGHA 232
           +       +I +   L+ + +LV  GK++T        IN+ + L +A  A  ES  G A
Sbjct: 272 RSMFQTADMIEQHHLLNRVARLVDAGKIRTTLAETFGTINAAN-LKRAH-ALIES--GKA 327

Query: 233 TGKIIVE 239
            GKI++E
Sbjct: 328 RGKIVLE 334

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model [Energy metabolism, Fermentation]. Length = 336

>gnl|CDD|176190 cd05288, PGDH, Prostaglandin dehydrogenases

 Score = 71.4 bits (176), Expect = 1e-14
 Identities = 72/251 (28%), Positives = 103/251 (41%), Gaps = 32/251 (12%)

Query: 9   VSHNGGGLAEFAVAKESSTVAR-----PSEVSAAEGS-GLPVAGLTAHQALTQSAGVKLD 62
           VS   G   E+AV   +S + +        +SA  G  G+   GLTA+  LT+    K  
Sbjct: 90  VSGFLG-WQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMT--GLTAYFGLTEIGKPK-- 144

Query: 63  GSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKS-LGADEVLDYKTP 120
             G+   ++V+AA+G VG    Q+AKL    V    G      ++   LG D  ++YKTP
Sbjct: 145 -PGE--TVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGFDAAINYKTP 201

Query: 121 D-GAALK--SPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVI----------DITPGPSA 167
           D   ALK  +P G   D       G         L   G++              PGP  
Sbjct: 202 DLAEALKEAAPDG--IDVYFDNVGGEILDAALTLLNKGGRIALCGAISQYNATEPPGPKN 259

Query: 168 MLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAES 227
           +     K+LT  +  +V        E L  L K + EGKLK   +    L  A +A+   
Sbjct: 260 LGNIITKRLTM-QGFIVSDYADRFPEALAELAKWLAEGKLKYREDVVEGLENAPEAFLGL 318

Query: 228 IDGHATGKIIV 238
             G  TGK++V
Sbjct: 319 FTGKNTGKLVV 329

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176183 cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases

 Score = 70.3 bits (173), Expect = 3e-14
 Identities = 45/136 (33%), Positives = 58/136 (42%), Gaps = 15/136 (11%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALT--QSAGVKLDGSGQQKNIL 71
           GG AE+        V  P  +S  E   L  AG TA  ++   +  G   +       +L
Sbjct: 96  GGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFTAALSVHRLEDNGQTPE----DGPVL 151

Query: 72  VTAASGGVGHYAVQ-LAKLGNTHVTASCGARN-IEFVKSLGADEVL---DYKTPDGAALK 126
           VT A+GGVG  AV  LAKLG T V A  G     +++KSLGA EVL   D        L 
Sbjct: 152 VTGATGGVGSIAVAILAKLGYT-VVALTGKEEQADYLKSLGASEVLDREDLLDESKKPLL 210

Query: 127 SPSGRKYDAVIHCATG 142
                ++   I    G
Sbjct: 211 K---ARWAGAIDTVGG 223

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score = 70.5 bits (173), Expect = 3e-14
 Identities = 72/238 (30%), Positives = 109/238 (45%), Gaps = 31/238 (13%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLP-VAGLTAHQALTQSAGVKLDGSGQQKNILV 72
           G  AE+A  K +S V  P  VS      +P V G+          G++  G  + + +LV
Sbjct: 116 GFFAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYR-------GLRRAGVKKGETVLV 168

Query: 73  TAASGGVGHYAVQLAK-LGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGR 131
           T A GGVG +A+Q+AK LG   +  +      + V    AD V+      G+   S   +
Sbjct: 169 TGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSKY-ADYVI-----VGSKF-SEEVK 221

Query: 132 KY---DAVIHCATGIPWSTFEP---NLGTNGKVI---DITPGPSAMLTFALKKLTFSKKQ 182
           K    D VI    G P  T E    +L   GK+I   ++ P P+  L      +     +
Sbjct: 222 KIGGADIVIET-VGTP--TLEESLRSLNMGGKIIQIGNVDPSPTYSLRLGY--IILKDIE 276

Query: 183 LVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP 240
           ++  +   KR+  + L KLV EGK+K VI ++  LS+ + A  E  D    GKI+V+P
Sbjct: 277 IIGHISATKRDVEEAL-KLVAEGKIKPVIGAEVSLSEIDKALEELKDKSRIGKILVKP 333

Length = 334

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 69.9 bits (172), Expect = 5e-14
 Identities = 64/250 (25%), Positives = 102/250 (40%), Gaps = 48/250 (19%)

Query: 11  HNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNI 70
              G  AE+A+A        P  +S  + + L  AG+T ++AL + AG+K    G    +
Sbjct: 116 TVDGTFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKALKK-AGLK---PGD--WV 169

Query: 71  LVTAASGGVGHYAVQLAKLGNTHVTA-SCGARNIEFVKSLGADEVLDYKTPD--GAALKS 127
           +++ A GG+GH  VQ AK     V A   G   +E  K LGAD  +D+K  D   A  + 
Sbjct: 170 VISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKELGADAFVDFKKSDDVEAVKEL 229

Query: 128 PSGRKYDAVIHCATGIPWSTFEP------NLGT-------NGKVIDITPGPSAMLTFALK 174
             G    AV+  A     + +E         GT        G  I + P         L+
Sbjct: 230 TGGGGAHAVVVTAVSA--AAYEQALDYLRPGGTLVCVGLPPGGFIPLDP-----FDLVLR 282

Query: 175 KLTF------SKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESI 228
            +T       +++ L        +E L+F       GK+K  I    PL    + + +  
Sbjct: 283 GITIVGSLVGTRQDL--------QEALEF----AARGKVKPHIQVV-PLEDLNEVFEKME 329

Query: 229 DGHATGKIIV 238
           +G   G+++V
Sbjct: 330 EGKIAGRVVV 339

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score = 69.6 bits (171), Expect = 6e-14
 Identities = 63/236 (26%), Positives = 96/236 (40%), Gaps = 24/236 (10%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           GG AE+ V    + V  P  V  A+ +    A LT + A+ ++  VK  G      +LV 
Sbjct: 118 GGFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVK-PGE----TVLVI 172

Query: 74  AASGGVGHYAVQLAKLGNTHVTAS-CGARNIEFVKSLGADEVLDYKTPDGAALKSPS-GR 131
              GG+G  AVQ+AK     V A       +E  K LGADEVL+         K+   G 
Sbjct: 173 GL-GGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGG 231

Query: 132 KYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLT-FALKKLTFSKKQLV--PLLL 188
            +D +     G    TFE           + PG   ++      KLT     L+   L +
Sbjct: 232 GFDVIFDFV-GTQ-PTFEDAQKA------VKPGGRIVVVGLGRDKLTVDLSDLIARELRI 283

Query: 189 I----PKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP 240
           I       E+L  ++ L+ +GKL   +    PL +  +       G   G++++ P
Sbjct: 284 IGSFGGTPEDLPEVLDLIAKGKLDPQV-ETRPLDEIPEVLERLHKGKVKGRVVLVP 338

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176231 cd08270, MDR4, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 68.9 bits (169), Expect = 9e-14
 Identities = 67/234 (28%), Positives = 101/234 (43%), Gaps = 21/234 (8%)

Query: 13  GGGLAEFAVAKESSTVAR-PSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNIL 71
            G  AE  VA  +  +A  P  VS A+ + LPVAG+TA +AL +   +     G++  +L
Sbjct: 85  MGAWAEL-VAVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGGPL----LGRR--VL 137

Query: 72  VTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSG 130
           VT ASGGVG +AVQLA L   HV A  G+    E ++ LGA EV+             SG
Sbjct: 138 VTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRELGAAEVV--VGGSEL-----SG 190

Query: 131 RKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFS--KKQLVPLLL 188
              D V+    G   +     L   G V+ +         F           ++L    L
Sbjct: 191 APVDLVVDSVGGPQLARALELLAPGGTVVSVGSSSGEPAVFNPAAFVGGGGGRRLYTFFL 250

Query: 189 I---PKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVE 239
               P   +L  L+ LV  G+L   I  +   ++ ++A    +     GK +++
Sbjct: 251 YDGEPLAADLARLLGLVAAGRLDPRIGWRGSWTEIDEAAEALLARRFRGKAVLD 304

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 305

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score = 68.1 bits (167), Expect = 2e-13
 Identities = 56/239 (23%), Positives = 94/239 (39%), Gaps = 21/239 (8%)

Query: 13  GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILV 72
            G   E+ VA     +  P  +S  + + L +  LTA   LT     +         ++ 
Sbjct: 90  EGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLT-----EYLKLPPGDWVIQ 144

Query: 73  TAASGGVGHYAVQLAKLGNTHVTASCGARN---IEFVKSLGADEVLDYKTPD-GAALKS- 127
            AA+  VG   +QLAKL           R    +E +K+LGADEV+D    D    +K  
Sbjct: 145 NAANSAVGRMLIQLAKLLGFKTIN--VVRRDEQVEELKALGADEVIDSSPEDLAQRVKEA 202

Query: 128 PSGRKYDAVIHCATGIPWSTFEPNLGTNGKVI-------DITPGPSAMLTFALKKLT-FS 179
             G      +    G   +    +L   G ++       +  P P ++  F    +  F 
Sbjct: 203 TGGAGARLALDAVGGESATRLARSLRPGGTLVNYGLLSGEPVPFPRSVFIFKDITVRGFW 262

Query: 180 KKQLVPLLLIPKREN-LDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKII 237
            +Q +       ++     ++KLV+ G L T + +K PL   E+A A +      GK++
Sbjct: 263 LRQWLHSATKEAKQETFAEVIKLVEAGVLTTPVGAKFPLEDFEEAVAAAEQPGRGGKVL 321

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|176248 cd08288, MDR_yhdh, Yhdh putative quinone oxidoreductases

 Score = 67.9 bits (167), Expect = 2e-13
 Identities = 43/117 (36%), Positives = 58/117 (49%), Gaps = 12/117 (10%)

Query: 5   WRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAH---QALTQSAGVKL 61
           W +   H GG  A+ A  K    V  P  +SA +   +  AG TA     AL +  GV  
Sbjct: 88  WGVGERHWGG-YAQRARVKADWLVPLPEGLSARQAMAIGTAGFTAMLCVMAL-EDHGVTP 145

Query: 62  DGSGQQKNILVTAASGGVGHYAVQ-LAKLGNTHVTASCG-ARNIEFVKSLGADEVLD 116
                   +LVT A+GGVG  AV  LA+LG   V AS G     ++++SLGA E++D
Sbjct: 146 GDG----PVLVTGAAGGVGSVAVALLARLGY-EVVASTGRPEEADYLRSLGASEIID 197

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 324

>gnl|CDD|176249 cd08289, MDR_yhfp_like, Yhfp putative quinone oxidoreductases

 Score = 67.7 bits (166), Expect = 3e-13
 Identities = 45/147 (30%), Positives = 73/147 (49%), Gaps = 12/147 (8%)

Query: 1   MCNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVK 60
           +   + + VSH+GG  +E+A       V  P  ++  E   L  AG TA  ++      +
Sbjct: 84  IVTSYDLGVSHHGG-YSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTAALSIH-----R 137

Query: 61  LDGSG---QQKNILVTAASGGVGHYAVQ-LAKLGNTHVTASCGARNI-EFVKSLGADEVL 115
           L+ +G   +Q  +LVT A+GGVG  AV  LAKLG   V AS G  +  +++K LGA EV+
Sbjct: 138 LEENGLTPEQGPVLVTGATGGVGSLAVSILAKLG-YEVVASTGKADAADYLKKLGAKEVI 196

Query: 116 DYKTPDGAALKSPSGRKYDAVIHCATG 142
             +     ++K    +++   +    G
Sbjct: 197 PREELQEESIKPLEKQRWAGAVDPVGG 223

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 326

>gnl|CDD|225041 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only]

 Score = 67.7 bits (166), Expect = 3e-13
 Identities = 66/247 (26%), Positives = 103/247 (41%), Gaps = 35/247 (14%)

Query: 15  GLAEFAVAKESSTV---ARPSEVSAAEGS-GLPVAGLTAHQALTQSAGVKLDGSGQQKNI 70
           G  E+A++           P+ +SA  G  G+P  GLTA+  L      K   +G+   +
Sbjct: 102 GWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMP--GLTAYFGLLDIGQPK---AGE--TV 154

Query: 71  LVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKS-LGADEVLDYKTPD-GAALKS 127
           +V+AA+G VG    Q+AKL    V    G A   +F+   LG D  +DYK  D   ALK 
Sbjct: 155 VVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEELGFDAGIDYKAEDFAQALKE 214

Query: 128 PSGRKYDAVIHCATGIPWSTFEPNLGTNGKVI-----------DITPGPSAMLTFALKKL 176
              +  D       G       P L    ++            ++ PGP  +     K+L
Sbjct: 215 ACPKGIDVYFENVGGEVLDAVLPLLNLFARIPVCGAISQYNAPELPPGPRRLPLLMAKRL 274

Query: 177 TFSKKQLVPLLLIPKR--ENLDFLVKLVKEGKLK---TVINSKHPLSKAEDAWAESIDGH 231
               +  +      +R  E L  L   VKEGK++   T+++    L  A +A+   + G 
Sbjct: 275 RV--QGFIVASDYDQRFPEALRELGGWVKEGKIQYRETIVDG---LENAPEAFIGLLSGK 329

Query: 232 ATGKIIV 238
             GK++V
Sbjct: 330 NFGKLVV 336

Length = 340

>gnl|CDD|234026 TIGR02823, oxido_YhdH, putative quinone oxidoreductase, YhdH/YhfP family

 Score = 66.8 bits (164), Expect = 5e-13
 Identities = 44/117 (37%), Positives = 61/117 (52%), Gaps = 12/117 (10%)

Query: 5   WRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAH---QALTQSAGVKL 61
           + + VSH+GG  +++A       V  P  +S  E   L  AG TA     AL +  G+  
Sbjct: 87  YGLGVSHDGG-YSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSVMALER-NGLTP 144

Query: 62  DGSGQQKNILVTAASGGVGHYAVQ-LAKLGNTHVTASCG-ARNIEFVKSLGADEVLD 116
           +       +LVT A+GGVG  AV  L+KLG   V AS G A   +++K LGA EV+D
Sbjct: 145 E----DGPVLVTGATGGVGSLAVAILSKLG-YEVVASTGKAEEEDYLKELGASEVID 196

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc [Unknown function, Enzymes of unknown specificity]. Length = 323

>gnl|CDD|176206 cd08244, MDR_enoyl_red, Possible enoyl reductase

 Score = 65.9 bits (161), Expect = 1e-12
 Identities = 42/110 (38%), Positives = 52/110 (47%), Gaps = 7/110 (6%)

Query: 13  GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILV 72
           GGG AE AVA   S    P  +       +   G TA   L   A +          +LV
Sbjct: 95  GGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTA-LGLLDLATLTPG-----DVVLV 148

Query: 73  TAASGGVGHYAVQLAK-LGNTHVTASCGARNIEFVKSLGADEVLDYKTPD 121
           TAA+GG+G   VQLAK  G T V A+ G      V++LGAD  +DY  PD
Sbjct: 149 TAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVRALGADVAVDYTRPD 198

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score = 63.8 bits (156), Expect = 6e-12
 Identities = 64/236 (27%), Positives = 102/236 (43%), Gaps = 20/236 (8%)

Query: 13  GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILV 72
            GG AE+ +   S  +  P  +  A  + L  +GLTA+ A+      KL      + +++
Sbjct: 127 DGGYAEYVIVPHSRYLVDPGGLDPALAATLACSGLTAYSAVK-----KLMPLVADEPVVI 181

Query: 73  TAASGGVGHYAVQLAK-LGNTH-VTASCGARNIEFVKSLGADEVLDYKTPDGAA-LKSPS 129
             A GG+G  A+ L K LG  + +        +E  K+ GAD V++   PD A  +   +
Sbjct: 182 IGA-GGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNGSDPDAAKRIIKAA 240

Query: 130 GRKYDAVIHCATGIPWSTF-EPNLGTNGKVIDIT----PGPSAMLTFALKKLTFSKKQLV 184
           G   DAVI        ++     L   GK++ +          +    L+ LT  +   V
Sbjct: 241 GGGVDAVIDFVNNSATASLAFDILAKGGKLVLVGLFGGEATLPLPLLPLRALTI-QGSYV 299

Query: 185 PLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP 240
             L     E L  LV L K GKLK +  ++ PLS   DA  +   G   G+ +++P
Sbjct: 300 GSL-----EELRELVALAKAGKLKPIPLTERPLSDVNDALDDLKAGKVVGRAVLKP 350

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score = 63.3 bits (155), Expect = 9e-12
 Identities = 62/243 (25%), Positives = 97/243 (39%), Gaps = 37/243 (15%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           GG AE+ +      V  P  +   E + L  AGLTA+ A+ ++      GS     ++V 
Sbjct: 119 GGFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAVKKALPYLDPGS----TVVVI 174

Query: 74  AASGGVGHYAVQLAKLGNTHVTASCGARNI---------EFVKSLGADEVLDYKTPDGAA 124
              GG+GH AVQ+ +       A   A  I         +  + LGAD VL+  + D   
Sbjct: 175 GV-GGLGHIAVQILR-------ALTPATVIAVDRSEEALKLAERLGADHVLN-ASDDVVE 225

Query: 125 --LKSPSGRKYDAVIHCA-----TGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLT 177
              +   GR  DAVI          +        L   G+ + +  G           L 
Sbjct: 226 EVRELTGGRGADAVIDFVGSDETLALAAK----LLAKGGRYVIV--GYGGHGRLPTSDLV 279

Query: 178 FSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKII 237
            ++  ++   L   R  L  +V L + GK+K  I +K PL  A +A     +G  TG+ +
Sbjct: 280 PTEISVI-GSLWGTRAELVEVVALAESGKVKVEI-TKFPLEDANEALDRLREGRVTGRAV 337

Query: 238 VEP 240
           + P
Sbjct: 338 LVP 340

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 22/216 (10%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           GG AE+ VA    TV  P  +  A+ + L  AG+T + AL  +      G    + + V 
Sbjct: 116 GGYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVYSALRDA------GPRPGERVAVL 169

Query: 74  AASGGVGHYAVQLAKLGNTHVTA-SCGARNIEFVKSLGADEVLDYKT--PDGAALKSPSG 130
              GG+GH AVQ A+       A +      E  + LGADEV+D      + AA      
Sbjct: 170 GI-GGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGG--- 225

Query: 131 RKYDAVIHCATGIPWSTFEPNLG---TNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLL 187
              D ++        +  E  LG     G+++ +    S   +  +  L   ++ +    
Sbjct: 226 --ADVILVTVVSG--AAAEAALGGLRRGGRIVLVGLPESPPFSPDIFPLIMKRQSIAGST 281

Query: 188 LIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDA 223
              + +  + L     EGK+K +I +  PL +A +A
Sbjct: 282 HGGRADLQEAL-DFAAEGKVKPMIET-FPLDQANEA 315

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|188164 TIGR01751, crot-CoA-red, crotonyl-CoA reductase

 Score = 59.4 bits (144), Expect = 2e-10
 Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 4/106 (3%)

Query: 12  NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNIL 71
           N G  AEFA+ K+   + +P  ++  E +   + G TA++ L       +       N+L
Sbjct: 138 NFGSFAEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPAAVK---PGDNVL 194

Query: 72  VTAASGGVGHYAVQLAK-LGNTHVTASCGARNIEFVKSLGADEVLD 116
           +  A+GG+G YA QLA+  G   V         E+ +SLGA+ V+D
Sbjct: 195 IWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAEYCRSLGAEAVID 240

The enzyme modelled by This model is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. Length = 398

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 58.4 bits (142), Expect = 4e-10
 Identities = 59/239 (24%), Positives = 89/239 (37%), Gaps = 49/239 (20%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           GG AE+ +A   +    P ++ AAE + L  AG+T   AL  S         +  +++  
Sbjct: 117 GGYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFNALRNS-------GAKPGDLVAV 169

Query: 74  AASGGVGHYAVQLA-KLGNTHVTASCGARNIEFVKSLGADEVLDYKTPD-GAALKSPSGR 131
              GG+GH AVQ A K+G   V  S G+   +  + LGA   +D    D   AL+   G 
Sbjct: 170 QGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGA 229

Query: 132 KYDAVIHCAT-GIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIP 190
           K   ++  A      S     L   GK++ +      +              + PL LI 
Sbjct: 230 K--LILATAPNAKAISALVGGLAPRGKLLILGAAGEPV-------------AVSPLQLIM 274

Query: 191 KR---------------ENLDFLVKLVKEGKLKTV--INSKHPLSKAEDAWAESIDGHA 232
            R               + L F         L  V  +    PL KA +A+   + G A
Sbjct: 275 GRKSIHGWPSGTALDSEDTLKF-------SALHGVRPMVETFPLEKANEAYDRMMSGKA 326

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 57.2 bits (139), Expect = 1e-09
 Identities = 52/216 (24%), Positives = 91/216 (42%), Gaps = 28/216 (12%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           GG AE+ VA E      P +    E + L  AG+  ++AL      KL G    + + + 
Sbjct: 121 GGYAEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGYRAL------KLAGLKPGQRLGLY 174

Query: 74  AASGGVGHYAVQLAKLGNTHVTA-SCGARNIEFVKSLGADEVLDYKTP-----DGAALKS 127
              G   H A+Q+A+     V A +    + E  + LGAD   D         D A + +
Sbjct: 175 GF-GASAHLALQIARYQGAEVFAFTRSGEHQELARELGADWAGDSDDLPPEPLDAAIIFA 233

Query: 128 PSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLL 187
           P G    A++  A           +   G+V+      S +  F  + L + +K +  + 
Sbjct: 234 PVG----ALVPAALR--------AVKKGGRVVLAGIHMSDIPAFDYELL-WGEKTIRSVA 280

Query: 188 LIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDA 223
            + +++  +FL KL  E  +K  + + +PL +A +A
Sbjct: 281 NLTRQDGEEFL-KLAAEIPIKPEVET-YPLEEANEA 314

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 53.1 bits (128), Expect = 4e-09
 Identities = 39/114 (34%), Positives = 53/114 (46%), Gaps = 9/114 (7%)

Query: 78  GVGHYAVQLAK-LGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPDGAA--LKSPSGRKY 133
           GVG  AVQLAK LG   V A       +E  K LGAD V++Y+  D      +   GR  
Sbjct: 1   GVGLAAVQLAKALGAARVIAVDRSEEKLELAKELGADHVINYRDEDFVERVRELTGGRGV 60

Query: 134 DAVIHCATGIPWSTFEP---NLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLV 184
           D VI C  G P +T E     L   G+V+ +     A + F L+ L   +  ++
Sbjct: 61  DVVIDC-VGAP-ATLEQALELLRPGGRVVVVGLPGGAPVPFPLRDLLLKELTIL 112

Length = 131

>gnl|CDD|176208 cd08246, crotonyl_coA_red, crotonyl-CoA reductase

 Score = 55.5 bits (134), Expect = 5e-09
 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 4/106 (3%)

Query: 12  NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNIL 71
           N G  A+FA+ + +  + +P  +S  E +   + G TA++ L       +       N+L
Sbjct: 142 NYGSFAQFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVK---PGDNVL 198

Query: 72  VTAASGGVGHYAVQLAK-LGNTHVTASCGARNIEFVKSLGADEVLD 116
           +  ASGG+G  A+QLA+  G   V         E+ ++LGA+ V++
Sbjct: 199 IWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRALGAEGVIN 244

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 393

>gnl|CDD|176254 cd08294, leukotriene_B4_DH_like, 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 12/101 (11%)

Query: 35  SAAEGS-GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTH 93
           S A G  G+P  GLTA+  L +    K       + ++V  A+G VG    Q+AK+    
Sbjct: 118 SLALGVLGMP--GLTAYFGLLEICKPKAG-----ETVVVNGAAGAVGSLVGQIAKIKGCK 170

Query: 94  VTASCGA-RNIEFVKSLGADEVLDYKTPD-GAALK--SPSG 130
           V    G+   + ++K LG D V +YKT     ALK  +P G
Sbjct: 171 VIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDG 211

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR)

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 69/264 (26%), Positives = 104/264 (39%), Gaps = 44/264 (16%)

Query: 5   WRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGS 64
           W I +    G     AV      +  P++V   + + L V   TA++ L     VKL   
Sbjct: 90  WVIPLRPGLGTWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLEDF--VKL--- 144

Query: 65  GQQKN--ILVTAASGGVGHYAVQLAKLGNTHVTASCGARN-----IEFVKSLGADEVLDY 117
             Q    ++   A+  VG   +QLAKL           R       E +K+LGAD VL  
Sbjct: 145 --QPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVLTE 202

Query: 118 ----KTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG--------- 164
                      LKS  G +    ++C  G   +     L   G +  +T G         
Sbjct: 203 EELRSLLATELLKSAPGGRPKLALNCVGGKSATELARLLSPGGTM--VTYGGMSGQPVTV 260

Query: 165 PSAMLTFALKKLTFSKKQLVPLLLIPKREN-------LDFLVKLVKEGKLKTV---INSK 214
           P+++L F  K +T     L   L   KR N       L+ L +L++EGKLK       + 
Sbjct: 261 PTSLLIF--KDITLRGFWLTRWL---KRANPEEKEDMLEELAELIREGKLKAPPVEKVTD 315

Query: 215 HPLSKAEDAWAESIDGHATGKIIV 238
            PL + +DA A ++ G   GK ++
Sbjct: 316 DPLEEFKDALANALKGGGGGKQVL 339

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341

>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)

 Score = 52.6 bits (127), Expect = 3e-08
 Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 9/126 (7%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           G  AE+ +       A  S++S AE + LP    TA  +L +S G++         +L+ 
Sbjct: 95  GSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQ-----PGDTLLIR 149

Query: 74  AASGGVGHYAVQLAKLGNTHVTASC-GARNIEFVKSLGADEVL-DYKTPDGAALKSPSGR 131
             +  VG  A++LAK     VTA+         +K LGADEV+ D          +P G 
Sbjct: 150 GGTSSVGLAALKLAKALGATVTATTRSPERAALLKELGADEVVIDDGAIAEQLRAAPGG- 208

Query: 132 KYDAVI 137
            +D V+
Sbjct: 209 -FDKVL 213

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 67/245 (27%), Positives = 101/245 (41%), Gaps = 34/245 (13%)

Query: 13  GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILV 72
            GGLAE+AV   ++    P  +   E + L  AG TA+ AL  +A V     G+    + 
Sbjct: 139 MGGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYGALKHAADV---RPGET---VA 192

Query: 73  TAASGGVGHYAVQLAKLGNTHVTASCGARNI----------EFVKSLGADEVLDYKTPD- 121
               GGVG  A+QLAK        + GA  I             K LGA   ++    D 
Sbjct: 193 VIGVGGVGSSAIQLAK--------AFGASPIIAVDVRDEKLAKAKELGATHTVNAAKEDA 244

Query: 122 -GAALKSPSGRKYDAVIHCATGIPWSTFEPNL---GTNGKVIDITPGPS-AMLTFALKKL 176
             A  +   GR  D V+  A G P  TF+  L      G+ + +   P  A     + +L
Sbjct: 245 VAAIREITGGRGVDVVVE-ALGKP-ETFKLALDVVRDGGRAVVVGLAPGGATAEIPITRL 302

Query: 177 TFSKKQLVPLLLIPKRENLDFLVKLVKEGKL--KTVINSKHPLSKAEDAWAESIDGHATG 234
                +++       R++L  LV L   GKL  + ++  K+ L +  +A+     G   G
Sbjct: 303 VRRGIKIIGSYGARPRQDLPELVGLAASGKLDPEALVTHKYKLEEINEAYENLRKGLIHG 362

Query: 235 KIIVE 239
           + IVE
Sbjct: 363 RAIVE 367

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 51.3 bits (124), Expect = 1e-07
 Identities = 50/176 (28%), Positives = 73/176 (41%), Gaps = 16/176 (9%)

Query: 3   NLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLD 62
           N    D +   GG A+  V  E      P  + +A  + L  AG+T +  L +  GV   
Sbjct: 112 NGKYPDGTITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGITVYSPLKR-NGV--- 167

Query: 63  GSGQQKNILVTAASGGVGHYAVQLAK-LGNTHVTA-SCGARNIEFVKSLGADEVLDYKTP 120
           G G++  ++     GG+GH AV+ AK LG   VTA S      E    LGADE +   T 
Sbjct: 168 GPGKRVGVVGI---GGLGHLAVKFAKALG-AEVTAFSRSPSKKEDALKLGADEFIA--TK 221

Query: 121 DGAALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGK--VIDITPGPSAMLTFAL 173
           D  A+K  +G   D +I   +       +   L   G   ++     P  +  F L
Sbjct: 222 DPEAMKKAAG-SLDLIIDTVSASHDLDPYLSLLKPGGTLVLVGAPEEPLPVPPFPL 276

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score = 49.9 bits (120), Expect = 3e-07
 Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 13/143 (9%)

Query: 10  SHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKN 69
           S   G  AE+      + +  P  V   E + +  A +  H        V+L G      
Sbjct: 110 SRRDGAFAEYVSVPARNLIKIPDHVDYEEAAMIEPAAVALH-------AVRLAGITLGDT 162

Query: 70  ILVTAASGGVGHYAVQLAK-LGNTHVTASC-GARNIEFVKSLGADEVLDYKTPDGAALKS 127
           ++V  A G +G  A+Q  K LG   V A       +   + LGAD+ ++ K  D   ++ 
Sbjct: 163 VVVIGA-GTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRE 221

Query: 128 P-SGRKYDAVIHCATGIPWSTFE 149
              GR  D VI  A G P +T E
Sbjct: 222 LTEGRGADLVIEAA-GSP-ATIE 242

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 61/243 (25%), Positives = 97/243 (39%), Gaps = 33/243 (13%)

Query: 12  NGGGLAEFAVAKESSTVARPSEVSAAEGSGL-PVAGLTAHQALTQSAGVKLDGSGQQKNI 70
            GGG AE+ V         P  V   E + + P+A   A  A+ +S G K   +      
Sbjct: 125 GGGGFAEYVVVPAYHVHKLPDNVPLEEAALVEPLA--VAWHAVRRS-GFKPGDT-----A 176

Query: 71  LVTAASGGVGHYAVQLAKL-GNTHVTASCGARN-IEFVKSLGADEVLDYKTPD-GAALKS 127
           LV  A G +G   +   K  G + +  S  +    E  + LGA  VLD    D  A ++ 
Sbjct: 177 LVLGA-GPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRK 235

Query: 128 PSGRK-YDAVIHCATGIPWSTFEPNLG---TNGKV--IDITPGPSAMLTFALKKLTFSKK 181
            +G    D    CA G+  +T +  +      G    + I   P   ++F    L   +K
Sbjct: 236 LTGGGGVDVSFDCA-GVQ-ATLDTAIDALRPRGTAVNVAIWEKP---ISFNPNDLVLKEK 290

Query: 182 QLVPLLLIPKRENLDF--LVKLVKEGKL--KTVINSKHPLSKA-EDAWAESIDGHATG-K 235
            L   +   +    DF  ++ L+  GK+  + +I S+ PL    E  + E I+      K
Sbjct: 291 TLTGSICYTRE---DFEEVIDLLASGKIDAEPLITSRIPLEDIVEKGFEELINDKEQHVK 347

Query: 236 IIV 238
           I+V
Sbjct: 348 ILV 350

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 61/259 (23%), Positives = 101/259 (38%), Gaps = 41/259 (15%)

Query: 1   MCNLWRIDVSHNG-GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGV 59
           +C   R     N  GG AE+ +  E + +  P ++S A+G+ L     TA+ AL +  GV
Sbjct: 103 LCTSKRAAYGWNRDGGHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYHAL-RRVGV 161

Query: 60  KLDGSGQQKNILVTAASGGVGHYAVQLAK-LGNTHVTAS-CGARNIEFVKSLGADEVLDY 117
               +     +LV  A G VG  A+ LA+ LG   V         +E  K+LGAD V++ 
Sbjct: 162 SGRDT-----VLVVGA-GPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINS 215

Query: 118 KTPDGAA-LKSPSGRKYDAVIHCATGI-----------PWST--FEPNLGTNGKVIDITP 163
              D     +  SG   D  I C+              PW        +G  G++  I  
Sbjct: 216 GQDDVQEIRELTSGAGADVAIECSGNTAARRLALEAVRPWGRLVL---VGEGGEL-TIEV 271

Query: 164 GPSAMLT-FAL-KKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAE 221
               +     L     FS        +    E  +FL +   + ++  ++  +  L +A 
Sbjct: 272 SNDLIRKQRTLIGSWYFS--------VPDMEECAEFLAR--HKLEVDRLVTHRFGLDQAP 321

Query: 222 DAWAESIDGHATGKIIVEP 240
           +A+A       +GK++   
Sbjct: 322 EAYAL-FAQGESGKVVFVF 339

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 54/251 (21%), Positives = 93/251 (37%), Gaps = 37/251 (14%)

Query: 10  SHNGGGLAEFAVAKESSTVAR-PSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQK 68
               GG AE+        +A+ P  +     +       TA+    + A V+  G+    
Sbjct: 117 GGIDGGFAEYVRVPADFNLAKLPDGIDEEAAALTEPLA-TAYHGHAERAAVRPGGT---- 171

Query: 69  NILVTAASGGVGHYAVQLAKLGNTHVTASCGARNI----------EFVKSLGADEVLDYK 118
            ++V  A G +G  A+ LAKL         GA  +          E  K  G  +V+   
Sbjct: 172 -VVVVGA-GPIGLLAIALAKLL--------GASVVIVVDRSPERLELAKEAGGADVVVNP 221

Query: 119 TPDGAALKS---PSGRKYDAVIHCATGIPWSTFE--PNLGTNGKVIDI-TPGPSAMLTFA 172
           + D A  +      GR  D VI    G P +  +    L   G V+ +   G    +   
Sbjct: 222 SEDDAGAEILELTGGRGADVVIEA-VGSPPALDQALEALRPGGTVVVVGVYGGE-DIPLP 279

Query: 173 LKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKL--KTVINSKHPLSKAEDAWAESIDG 230
              +   +  L   L    RE+ +  + L+  GK+  + +I  + PL  A +A+    D 
Sbjct: 280 AGLVVSKELTLRGSLRPSGREDFERALDLLASGKIDPEKLITHRLPLDDAAEAYELFADR 339

Query: 231 HAT-GKIIVEP 240
                K++++P
Sbjct: 340 KEEAIKVVLKP 350

Length = 350

>gnl|CDD|131872 TIGR02825, B4_12hDH, leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

 Score = 46.1 bits (109), Expect = 6e-06
 Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 11/105 (10%)

Query: 34  VSAAEGS-GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT 92
           +S A G+ G+P  GLTA+  L +  GVK    G+   ++V AA+G VG    Q+AKL   
Sbjct: 112 LSLALGTVGMP--GLTAYFGLLEICGVK---GGE--TVMVNAAAGAVGSVVGQIAKLKGC 164

Query: 93  HVTASCGA-RNIEFVKSLGADEVLDYKTPDG--AALKSPSGRKYD 134
            V  + G+   + ++K LG D   +YKT       LK  S   YD
Sbjct: 165 KVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYD 209

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. Length = 325

>gnl|CDD|215606 PLN03154, PLN03154, putative allyl alcohol dehydrogenase; Provisional

 Score = 46.0 bits (109), Expect = 6e-06
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 9/89 (10%)

Query: 42  LPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA- 100
           L +AG TA+    +    K     +  ++ V+AASG VG    QLAKL   +V  S G+ 
Sbjct: 139 LGMAGFTAYAGFYEVCSPK-----KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSS 193

Query: 101 RNIEFVKS-LGADEVLDYK-TPD-GAALK 126
           + ++ +K+ LG DE  +YK  PD  AALK
Sbjct: 194 QKVDLLKNKLGFDEAFNYKEEPDLDAALK 222

Length = 348

>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase

 Score = 45.6 bits (108), Expect = 9e-06
 Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 8/104 (7%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           GG A   V  +   V  P  ++  + + L  AG+T +  L+      L  SG +  IL  
Sbjct: 133 GGFASAMVVDQKFVVKIPEGMAPEQAAPLLCAGVTVYSPLSH---FGLKQSGLRGGIL-- 187

Query: 74  AASGGVGHYAVQLAKLGNTHVT--ASCGARNIEFVKSLGADEVL 115
              GGVGH  V++AK    HVT  +S   +  E ++ LGAD+ L
Sbjct: 188 -GLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYL 230

Length = 357

>gnl|CDD|176255 cd08295, double_bond_reductase_like, Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 11/90 (12%)

Query: 42  LPVAGLTAHQALTQSAGVKLDGSGQQ-KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA 100
           L + GLTA+      AG       ++ + + V+AASG VG    QLAKL   +V  S G+
Sbjct: 132 LGMPGLTAY------AGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGS 185

Query: 101 RN-IEFVKS-LGADEVLDYKT-PD-GAALK 126
              ++ +K+ LG D+  +YK  PD  AALK
Sbjct: 186 DEKVDLLKNKLGFDDAFNYKEEPDLDAALK 215

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in inflamatory cells, and in other cells by bifunctional LTB4 12-HD/PGR. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 338

>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 17/141 (12%)

Query: 10  SHNGGGLAEFAVAKESSTVARPSEVSAAEGSGL-PVA-GLTA-HQALTQSAGVKLDGSGQ 66
           S   GG AE+ V K  +  A P+++   +G+ + P+  GL A H A             +
Sbjct: 111 SRRDGGNAEYIVVKRKNLFALPTDMPIEDGAFIEPITVGLHAFHLA----------QGCE 160

Query: 67  QKNILVTAASGGVGHYAVQLAK-LGNTHVTA-SCGARNIEFVKSLGADEVLDYKTPDGAA 124
            KN+++  A G +G  A+Q A  LG   VTA    +  +   KSLGA +  + +      
Sbjct: 161 GKNVIIIGA-GTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQ 219

Query: 125 LKSP-SGRKYDAVIHCATGIP 144
           ++S     ++D +I    G+P
Sbjct: 220 IQSVLRELRFDQLILETAGVP 240

Length = 347

>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 52/230 (22%), Positives = 106/230 (46%), Gaps = 14/230 (6%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           GG+AE  +      V  P  +  A+ S +  AG+T ++A+ + +G+K    GQ    +  
Sbjct: 116 GGMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKAI-KVSGIK---PGQW---IAI 168

Query: 74  AASGGVGHYAVQLAK-LGNTHVTASCGARN-IEFVKSLGADEVLDYKTPDGAA--LKSPS 129
             +GG+G+ A+Q AK + N  V A     + +   K +GAD  ++ K  +  A  ++  +
Sbjct: 169 YGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSKRVEDVAKIIQEKT 228

Query: 130 GRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLI 189
           G  + AV+       ++     +   G+V+ +   P   +  ++ +L     ++V   L+
Sbjct: 229 GGAHAAVVTAVAKAAFNQAVDAVRAGGRVVAVGL-PPESMDLSIPRLVLDGIEVVG-SLV 286

Query: 190 PKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVE 239
             R++L+   +   EGK+   +    PL    D + E   G   G+++++
Sbjct: 287 GTRQDLEEAFQFGAEGKVVPKV-QLRPLEDINDIFDEMEQGKIQGRMVID 335

Length = 338

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 58/236 (24%), Positives = 97/236 (41%), Gaps = 20/236 (8%)

Query: 14  GGLAEFAVAKESST--VARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNIL 71
           G  AE+     +    V  P +V     +GL     TA +AL   A VK    G+    +
Sbjct: 116 GSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRALVHQARVK---PGE---WV 169

Query: 72  VTAASGGVGHYAVQLAK-LGNTHVTASCGARNIEFVKSLGADEVLDYKTPD--GAALKSP 128
                GGVG  AV +A  LG   +        +E  + LGA   ++    +   AA++  
Sbjct: 170 AVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDL 229

Query: 129 SGRKYDAVIHCATGIPWSTFE--PNLGTNGKVIDI--TPGPSAMLTFALKKLTFSKKQLV 184
           +G      +  A GIP +      +L   G+ + +  T G  A +   + ++   + ++V
Sbjct: 230 TGGGAHVSVD-ALGIPETCRNSVASLRKRGRHVQVGLTLGEEAGVALPMDRVVARELEIV 288

Query: 185 PLLLIPKRENLDFLVKLVKEGKLK--TVINSKHPLSKAEDAWAESIDGHATGKIIV 238
               +P     D ++ L+  GKL    ++     L +A DA A  +D +AT  I V
Sbjct: 289 GSHGMPAHR-YDAMLALIASGKLDPEPLVGRTISLDEAPDALAA-MDDYATAGITV 342

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 48/154 (31%), Positives = 65/154 (42%), Gaps = 18/154 (11%)

Query: 1   MC-NLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGV 59
           +C NL  + V+ NGG  AE+ V         P  +S  E +         H       G+
Sbjct: 101 LCENLTAVGVTRNGG-FAEYVVVPAKQVYKIPDNLSFEEAALAEPLSCAVH-------GL 152

Query: 60  KLDGSGQQKNILVTAASGGVGHYAVQLAKL-GNTHVTASCGARN---IEFVKSLGADEVL 115
            L G     ++LV  A G +G    QL KL G + VT +    N   +E  K LGA E +
Sbjct: 153 DLLGIKPGDSVLVFGA-GPIGLLLAQLLKLNGASRVTVA--EPNEEKLELAKKLGATETV 209

Query: 116 DYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFE 149
           D    D  A K  +   +D VI   TG+P  T E
Sbjct: 210 DPSREDPEAQKEDNPYGFDVVIEA-TGVP-KTLE 241

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 49/224 (21%), Positives = 75/224 (33%), Gaps = 28/224 (12%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           G  AE  V   +  V  P  +     +   +   TA   +  +     +       + V 
Sbjct: 52  GPHAERVVVPANLLVPLPDGLPPERAALTAL-AATALNGVRDAEPRLGE------RVAVV 104

Query: 74  AASGGVGHYAVQLAKL-GNTHVTA-SCGARNIEFVKSLG-ADEVLDYKTPDGAALKSPSG 130
              G VG  A QLAK  G   V      A   E  ++LG AD V               G
Sbjct: 105 GL-GLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAA------DTADEIGG 157

Query: 131 RKYDAVIHC-ATGIPWSTFEPNLGTNGKVIDI------TPGPSAMLTFALKKLTFSKKQL 183
           R  D VI    +     T    L   G+V+ +               F    +  S+   
Sbjct: 158 RGADVVIEASGSPSALETALRLLRDRGRVVLVGWYGLKPLLLGEEFHFKRLPIRSSQVYG 217

Query: 184 VPLLLIPKR----ENLDFLVKLVKEGKLKTVINSKHPLSKAEDA 223
           +     P+R     NL+  + L+ EG+L+ +I  + P   A +A
Sbjct: 218 IGRYDRPRRWTEARNLEEALDLLAEGRLEALITHRVPFEDAPEA 261

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

 Score = 39.5 bits (92), Expect = 8e-04
 Identities = 53/247 (21%), Positives = 90/247 (36%), Gaps = 29/247 (11%)

Query: 13  GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGL--------TAHQALTQSAGVKLDGS 64
            GG A   V           + +    +GLP+  +        T +QA  Q AG+K    
Sbjct: 113 QGGFASHIVVPAKGLC--VVDEARLAAAGLPLEHVSVVADAVTTPYQAAVQ-AGLK---- 165

Query: 65  GQQKNILVTAASGGVGHYAVQLAK-LGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGA 123
             + ++++   +GGVG Y VQ AK +G   V        +E +K  GAD  L+ K     
Sbjct: 166 --KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAR 223

Query: 124 ALKSPSGRKYDA---------VIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALK 174
            +K        A         +  C+   P      +L ++G  + +     A   + L 
Sbjct: 224 EVKKLIKAFAKARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVVGYTMAKTEYRLS 283

Query: 175 KL-TFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHAT 233
            L  F  + L      P R      + L  + +L   +  + PL + E  +A +      
Sbjct: 284 NLMAFHARALGNWGCPPDRYPAALDLVLDGKIQLGPFV-ERRPLDQIEHVFAAAHHHKLK 342

Query: 234 GKIIVEP 240
            + I+ P
Sbjct: 343 RRAILTP 349

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 349

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 17/135 (12%)

Query: 11  HNGGGLAEFAVAKESSTVARPSEVSAAEGSG---LPVAGLTAHQALTQSAGVKLDGSGQQ 67
           H  GG  E+ V   S  V  P  +S    +    L VA    ++A          G    
Sbjct: 117 HVQGGFREYLVVDASQCVPLPDGLSLRRAALAEPLAVALHAVNRA----------GDLAG 166

Query: 68  KNILVTAASGGVGHYAVQLAKL-GNTHVTAS-CGARNIEFVKSLGADEVLDYKTPDGAAL 125
           K +LVT A G +G   V  A+  G   + A+      +   +++GADE ++      AA 
Sbjct: 167 KRVLVTGA-GPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAY 225

Query: 126 KSPSGRKYDAVIHCA 140
            +  G  +D V   +
Sbjct: 226 AADKGD-FDVVFEAS 239

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase

 Score = 37.6 bits (87), Expect = 0.004
 Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 16/157 (10%)

Query: 8   DVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQ 67
           D + N GG ++  V  +   +  P  +    G+ L  AG+T +  +      K  G  + 
Sbjct: 130 DGTKNYGGYSDMIVVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPM------KYYGMTEP 183

Query: 68  KNILVTAASGGVGHYAVQLAKLGNTHVT--ASCGARNIEFVKSLGADEVLDYKTPDGAAL 125
              L  A  GG+GH AV++ K     VT  +S   +  E +  LGAD  L   + D   +
Sbjct: 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFL--VSTDPEKM 241

Query: 126 KSPSGRKYDAVIHCATGIPWSTFEPNLG---TNGKVI 159
           K+  G   D +I   + +      P LG    NGK+I
Sbjct: 242 KAAIG-TMDYIIDTVSAV--HALGPLLGLLKVNGKLI 275

Length = 360

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	100.0
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	100.0
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	100.0
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	100.0
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	100.0
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	100.0
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	100.0
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	100.0
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	100.0
PLN02586	360	probable cinnamyl alcohol dehydrogenase	100.0
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	100.0
PLN02178	375	cinnamyl-alcohol dehydrogenase	100.0
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	100.0
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	100.0
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	100.0
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	100.0
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	100.0
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	99.98
PLN02827	378	Alcohol dehydrogenase-like	99.98
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	99.98
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	99.97
PLN02514	357	cinnamyl-alcohol dehydrogenase	99.97
PLN02740	381	Alcohol dehydrogenase-like	99.97
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	99.97
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	99.97
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	99.97
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	99.97
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	99.97
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	99.97
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	99.97
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	99.97
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	99.97
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	99.97
COG2130	340	Putative NADP-dependent oxidoreductases [General f	99.97
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	99.97
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	99.97
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	99.97
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	99.97
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	99.97
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	99.97
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	99.96
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	99.96
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	99.96
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	99.96
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	99.96
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	99.96
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	99.96
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	99.96
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.96
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	99.96
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	99.96
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.96
PRK13771	334	putative alcohol dehydrogenase; Provisional	99.96
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	99.96
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	99.95
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	99.95
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	99.95
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	99.95
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	99.95
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	99.95
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	99.95
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	99.95
PTZ00354	334	alcohol dehydrogenase; Provisional	99.95
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.95
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	99.95
PRK10083	339	putative oxidoreductase; Provisional	99.95
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	99.95
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.95
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	99.95
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.95
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	99.95
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	99.95
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	99.95
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	99.95
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	99.95
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	99.95
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	99.95
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	99.94
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	99.94
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	99.94
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	99.94
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	99.94
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	99.94
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	99.94
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.94
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	99.94
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	99.94
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.94
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.94
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	99.94
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	99.94
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	99.94
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	99.94
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	99.94
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	99.94
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	99.94
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	99.94
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.94
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.94
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	99.93
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	99.93
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	99.93
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	99.93
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.93
PLN02702	364	L-idonate 5-dehydrogenase	99.93
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.93
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.93
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	99.93
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.93
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	99.93
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.93
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.93
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.93
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.93
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.93
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.93
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.93
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.92
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.92
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.92
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.92
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.91
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.91
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	99.91
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.9
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	99.78
PF13602	127	ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ	99.71
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.56
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	99.45
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.66
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.44
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.44
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.26
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	98.21
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.18
PLN02494	477	adenosylhomocysteinase	98.14
PTZ00075	476	Adenosylhomocysteinase; Provisional	98.02
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.84
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.76
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	97.76
PRK08324	681	short chain dehydrogenase; Validated	97.75
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	97.69
COG0300	265	DltE Short-chain dehydrogenases of various substra	97.64
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.62
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.62
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.62
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.55
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.53
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	97.52
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.52
PRK12742	237	oxidoreductase; Provisional	97.52
PRK05993	277	short chain dehydrogenase; Provisional	97.51
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.45
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.45
PRK05693	274	short chain dehydrogenase; Provisional	97.43
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	97.39
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	97.39
PRK08177	225	short chain dehydrogenase; Provisional	97.35
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.3
PRK06182	273	short chain dehydrogenase; Validated	97.26
PRK12367	245	short chain dehydrogenase; Provisional	97.26
PRK06139	330	short chain dehydrogenase; Provisional	97.25
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.22
PRK07060	245	short chain dehydrogenase; Provisional	97.22
PRK06057	255	short chain dehydrogenase; Provisional	97.19
PRK09291	257	short chain dehydrogenase; Provisional	97.17
PRK06949	258	short chain dehydrogenase; Provisional	97.16
PRK05866	293	short chain dehydrogenase; Provisional	97.12
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.11
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.11
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.1
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.09
PRK08017	256	oxidoreductase; Provisional	97.09
PRK04148	134	hypothetical protein; Provisional	97.08
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	97.07
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.06
PRK07806	248	short chain dehydrogenase; Provisional	97.03
PLN03209	576	translocon at the inner envelope of chloroplast su	97.01
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.99
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	96.99
PRK06953	222	short chain dehydrogenase; Provisional	96.98
PRK06196	315	oxidoreductase; Provisional	96.95
PRK07831	262	short chain dehydrogenase; Provisional	96.94
PRK05872	296	short chain dehydrogenase; Provisional	96.92
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	96.92
PRK07814	263	short chain dehydrogenase; Provisional	96.91
PRK08339	263	short chain dehydrogenase; Provisional	96.9
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.88
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.86
PRK09072	263	short chain dehydrogenase; Provisional	96.85
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	96.84
PRK06180	277	short chain dehydrogenase; Provisional	96.82
PRK05867	253	short chain dehydrogenase; Provisional	96.82
PRK06841	255	short chain dehydrogenase; Provisional	96.82
PRK06194	287	hypothetical protein; Provisional	96.79
PRK12829	264	short chain dehydrogenase; Provisional	96.79
PRK06181	263	short chain dehydrogenase; Provisional	96.78
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.77
PRK07904	253	short chain dehydrogenase; Provisional	96.75
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	96.75
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.75
PRK07326	237	short chain dehydrogenase; Provisional	96.73
PRK07453	322	protochlorophyllide oxidoreductase; Validated	96.71
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.71
PRK06500	249	short chain dehydrogenase; Provisional	96.69
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.69
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	96.68
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	96.68
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.68
PRK07109	334	short chain dehydrogenase; Provisional	96.67
PRK07677	252	short chain dehydrogenase; Provisional	96.66
PRK07478	254	short chain dehydrogenase; Provisional	96.65
PF11017	314	DUF2855: Protein of unknown function (DUF2855); In	96.64
PRK08267	260	short chain dehydrogenase; Provisional	96.63
PRK12939	250	short chain dehydrogenase; Provisional	96.59
PRK07063	260	short chain dehydrogenase; Provisional	96.57
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	96.57
PRK07825	273	short chain dehydrogenase; Provisional	96.55
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	96.55
PRK13940	414	glutamyl-tRNA reductase; Provisional	96.55
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.53
CHL00194	317	ycf39 Ycf39; Provisional	96.53
PRK08265	261	short chain dehydrogenase; Provisional	96.51
PRK12828	239	short chain dehydrogenase; Provisional	96.51
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	96.5
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	96.5
PLN02253	280	xanthoxin dehydrogenase	96.49
PRK06197	306	short chain dehydrogenase; Provisional	96.49
PRK07774	250	short chain dehydrogenase; Provisional	96.48
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	96.47
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	96.47
PRK05875	276	short chain dehydrogenase; Provisional	96.47
PRK08628	258	short chain dehydrogenase; Provisional	96.47
PRK08340	259	glucose-1-dehydrogenase; Provisional	96.46
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	96.46
PRK07454	241	short chain dehydrogenase; Provisional	96.46
PRK08264	238	short chain dehydrogenase; Validated	96.44
PRK06483	236	dihydromonapterin reductase; Provisional	96.44
PRK06138	252	short chain dehydrogenase; Provisional	96.42
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.41
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	96.41
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	96.41
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	96.41
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	96.41
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	96.41
PRK08643	256	acetoin reductase; Validated	96.41
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	96.41
PRK08277	278	D-mannonate oxidoreductase; Provisional	96.41
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	96.4
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.4
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.4
PRK05876	275	short chain dehydrogenase; Provisional	96.39
PRK06914	280	short chain dehydrogenase; Provisional	96.39
PRK08862	227	short chain dehydrogenase; Provisional	96.38
PRK06125	259	short chain dehydrogenase; Provisional	96.38
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.37
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	96.37
PRK06482	276	short chain dehydrogenase; Provisional	96.36
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	96.34
PLN02653	340	GDP-mannose 4,6-dehydratase	96.31
PRK06179	270	short chain dehydrogenase; Provisional	96.31
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	96.3
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	96.29
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	96.29
PRK08278	273	short chain dehydrogenase; Provisional	96.28
PRK05884	223	short chain dehydrogenase; Provisional	96.28
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	96.27
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	96.26
PRK06484	520	short chain dehydrogenase; Validated	96.26
PRK08263	275	short chain dehydrogenase; Provisional	96.26
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.25
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	96.25
PRK06198	260	short chain dehydrogenase; Provisional	96.25
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.25
PRK10258	251	biotin biosynthesis protein BioC; Provisional	96.23
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	96.23
PRK07775	274	short chain dehydrogenase; Provisional	96.22
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	96.22
PRK08226	263	short chain dehydrogenase; Provisional	96.2
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.2
PRK07074	257	short chain dehydrogenase; Provisional	96.19
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	96.19
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	96.18
PRK07023	243	short chain dehydrogenase; Provisional	96.18
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	96.17
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	96.17
COG4122	219	Predicted O-methyltransferase [General function pr	96.17
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	96.17
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	96.16
PRK06114	254	short chain dehydrogenase; Provisional	96.16
PRK12743	256	oxidoreductase; Provisional	96.16
PRK06720	169	hypothetical protein; Provisional	96.15
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.15
PRK05717	255	oxidoreductase; Validated	96.15
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	96.12
PRK12938	246	acetyacetyl-CoA reductase; Provisional	96.12
PRK08251	248	short chain dehydrogenase; Provisional	96.12
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	96.11
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.11
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	96.11
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.1
PRK10538	248	malonic semialdehyde reductase; Provisional	96.08
PRK05650	270	short chain dehydrogenase; Provisional	96.08
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.08
PLN02896	353	cinnamyl-alcohol dehydrogenase	96.07
PRK05562	223	precorrin-2 dehydrogenase; Provisional	96.06
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.05
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	96.04
PRK08219	227	short chain dehydrogenase; Provisional	96.04
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.02
PRK13243	333	glyoxylate reductase; Reviewed	96.02
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.01
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	96.0
PRK06484	520	short chain dehydrogenase; Validated	96.0
PRK07097	265	gluconate 5-dehydrogenase; Provisional	95.99
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	95.99
PRK05854	313	short chain dehydrogenase; Provisional	95.97
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	95.97
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	95.97
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.95
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	95.95
TIGR00438	188	rrmJ cell division protein FtsJ.	95.94
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	95.94
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.94
PLN02780	320	ketoreductase/ oxidoreductase	95.91
PRK08317	241	hypothetical protein; Provisional	95.91
PRK07062	265	short chain dehydrogenase; Provisional	95.9
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.89
PRK07576	264	short chain dehydrogenase; Provisional	95.89
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	95.88
PLN00198	338	anthocyanidin reductase; Provisional	95.87
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	95.86
PRK08213	259	gluconate 5-dehydrogenase; Provisional	95.85
PRK08703	239	short chain dehydrogenase; Provisional	95.85
PRK07523	255	gluconate 5-dehydrogenase; Provisional	95.85
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	95.84
KOG1199	260	consensus Short-chain alcohol dehydrogenase/3-hydr	95.83
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.83
PRK12937	245	short chain dehydrogenase; Provisional	95.83
PRK07577	234	short chain dehydrogenase; Provisional	95.82
PRK09186	256	flagellin modification protein A; Provisional	95.82
PRK07890	258	short chain dehydrogenase; Provisional	95.81
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	95.8
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.8
COG2910	211	Putative NADH-flavin reductase [General function p	95.79
PRK07035	252	short chain dehydrogenase; Provisional	95.78
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	95.76
PRK06701	290	short chain dehydrogenase; Provisional	95.73
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	95.73
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	95.73
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	95.72
PRK08589	272	short chain dehydrogenase; Validated	95.71
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	95.7
PRK11207	197	tellurite resistance protein TehB; Provisional	95.7
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	95.67
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	95.66
PRK13255	218	thiopurine S-methyltransferase; Reviewed	95.65
PRK07791	286	short chain dehydrogenase; Provisional	95.63
PRK06101	240	short chain dehydrogenase; Provisional	95.62
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.62
PLN02686	367	cinnamoyl-CoA reductase	95.61
PRK07067	257	sorbitol dehydrogenase; Provisional	95.6
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	95.59
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.57
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	95.57
PLN00016	378	RNA-binding protein; Provisional	95.56
PLN02695	370	GDP-D-mannose-3',5'-epimerase	95.56
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	95.55
PRK06172	253	short chain dehydrogenase; Provisional	95.52
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	95.52
PRK08085	254	gluconate 5-dehydrogenase; Provisional	95.51
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.49
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	95.49
PRK06398	258	aldose dehydrogenase; Validated	95.47
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	95.47
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.46
PRK07985	294	oxidoreductase; Provisional	95.46
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	95.46
PRK12746	254	short chain dehydrogenase; Provisional	95.46
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	95.44
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.43
PRK09242	257	tropinone reductase; Provisional	95.42
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	95.42
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	95.4
PRK07024	257	short chain dehydrogenase; Provisional	95.39
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.39
PLN03139	386	formate dehydrogenase; Provisional	95.38
PRK12827	249	short chain dehydrogenase; Provisional	95.37
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	95.37
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.37
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	95.36
PRK06523	260	short chain dehydrogenase; Provisional	95.36
PRK11579	346	putative oxidoreductase; Provisional	95.35
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	95.35
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	95.34
KOG1252	362	consensus Cystathionine beta-synthase and related	95.33
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	95.32
PRK12935	247	acetoacetyl-CoA reductase; Provisional	95.31
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	95.29
PRK08618	325	ornithine cyclodeaminase; Validated	95.29
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.29
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	95.28
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	95.28
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	95.28
PLN02214	342	cinnamoyl-CoA reductase	95.27
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	95.25
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.24
PRK05855	582	short chain dehydrogenase; Validated	95.23
PRK07856	252	short chain dehydrogenase; Provisional	95.23
PRK01581	374	speE spermidine synthase; Validated	95.22
PRK06124	256	gluconate 5-dehydrogenase; Provisional	95.22
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	95.2
PRK06487	317	glycerate dehydrogenase; Provisional	95.2
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	95.19
PRK00811	283	spermidine synthase; Provisional	95.18
KOG0725	270	consensus Reductases with broad range of substrate	95.16
PRK14967	223	putative methyltransferase; Provisional	95.15
PLN02928	347	oxidoreductase family protein	95.15
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.14
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	95.14
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	95.14
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.13
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	95.11
PLN02427	386	UDP-apiose/xylose synthase	95.09
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.09
KOG1208	314	consensus Dehydrogenases with different specificit	95.09
PRK07201	657	short chain dehydrogenase; Provisional	95.07
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	95.06
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	95.02
PRK06128	300	oxidoreductase; Provisional	95.02
PLN02366	308	spermidine synthase	95.02
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	95.01
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	95.01
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	95.0
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.98
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	94.94
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	94.93
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.91
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	94.89
PRK08303	305	short chain dehydrogenase; Provisional	94.87
PRK07832	272	short chain dehydrogenase; Provisional	94.86
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	94.86
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	94.85
PRK07402	196	precorrin-6B methylase; Provisional	94.85
PLN02240	352	UDP-glucose 4-epimerase	94.85
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.84
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.84
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.82
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.8
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.79
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	94.78
PLN02583	297	cinnamoyl-CoA reductase	94.78
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.77
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	94.77
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	94.77
PRK07574	385	formate dehydrogenase; Provisional	94.76
PRK07340	304	ornithine cyclodeaminase; Validated	94.75
PRK07102	243	short chain dehydrogenase; Provisional	94.75
KOG1203	411	consensus Predicted dehydrogenase [Carbohydrate tr	94.75
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	94.74
PLN02244	340	tocopherol O-methyltransferase	94.73
PRK03659	601	glutathione-regulated potassium-efflux system prot	94.71
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	94.71
PF08659	181	KR: KR domain; InterPro: IPR013968 This domain is	94.71
PLN03075	296	nicotianamine synthase; Provisional	94.7
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	94.7
PRK03562	621	glutathione-regulated potassium-efflux system prot	94.68
PRK06123	248	short chain dehydrogenase; Provisional	94.67
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	94.66
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.66
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	94.66
PLN00203	519	glutamyl-tRNA reductase	94.66
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	94.62
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	94.62
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	94.6
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	94.59
PRK15116	268	sulfur acceptor protein CsdL; Provisional	94.58
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.58
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	94.57
PRK10637	457	cysG siroheme synthase; Provisional	94.57
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.57
PLN02166	436	dTDP-glucose 4,6-dehydratase	94.56
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	94.55
PLN02256	304	arogenate dehydrogenase	94.53
PRK08655	437	prephenate dehydrogenase; Provisional	94.52
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	94.52
PRK10669	558	putative cation:proton antiport protein; Provision	94.52
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	94.49
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	94.49
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	94.49
PLN02778	298	3,5-epimerase/4-reductase	94.48
PRK12814	652	putative NADPH-dependent glutamate synthase small	94.45
PRK07417	279	arogenate dehydrogenase; Reviewed	94.45
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	94.43
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	94.41
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	94.41
PRK08936	261	glucose-1-dehydrogenase; Provisional	94.4
PRK09135	249	pteridine reductase; Provisional	94.39
PRK06924	251	short chain dehydrogenase; Provisional	94.39

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=1.6e-42  Score=274.37  Aligned_cols=228  Identities=27%  Similarity=0.375  Sum_probs=205.8

Q ss_pred             CcccceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHH
Q 045248            1 MCNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVG   80 (240)
Q Consensus         1 ~c~~~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG   80 (240)
                      +|++....++..+|+|+||+++++++++++|+++++++||.+.|+..|.|+++ +..++     +||++|+|+| .||+|
T Consensus       107 ~C~~~~~~gy~~~GGyaeyv~v~~~~~~~iP~~~d~~~aApllCaGiT~y~al-k~~~~-----~pG~~V~I~G-~GGlG  179 (339)
T COG1064         107 LCPNQKITGYTTDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRAL-KKANV-----KPGKWVAVVG-AGGLG  179 (339)
T ss_pred             cCCCccccceeecCcceeEEEEchHHeEECCCCCChhhhhhhhcCeeeEeeeh-hhcCC-----CCCCEEEEEC-CcHHH
Confidence            58888888999999999999999999999999999999999999999999999 66888     9999999999 78999


Q ss_pred             HHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCc-cccccCCCCCcccEEEeCCCCCCccccccCCCCCcEE
Q 045248           81 HYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKV  158 (240)
Q Consensus        81 ~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~i  158 (240)
                      ++++|+|+++|++|++++++ ++.+.++++|++++++.++++ ...+..    .+|+++|+++..++..++++|+++|++
T Consensus       180 h~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~----~~d~ii~tv~~~~~~~~l~~l~~~G~~  255 (339)
T COG1064         180 HMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKE----IADAIIDTVGPATLEPSLKALRRGGTL  255 (339)
T ss_pred             HHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHh----hCcEEEECCChhhHHHHHHHHhcCCEE
Confidence            99999999999999999975 899999999999999977443 222322    299999999966699999999999999


Q ss_pred             EEeCCCc-hHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEE
Q 045248          159 IDITPGP-SAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKII  237 (240)
Q Consensus       159 v~~g~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvv  237 (240)
                      +++|.+. ....+++...+.++++++.|+.. .++.++++++++..+|++++.+...++++++++||+.|.+++..||.|
T Consensus       256 v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~-g~~~d~~e~l~f~~~g~Ikp~i~e~~~l~~in~A~~~m~~g~v~gR~V  334 (339)
T COG1064         256 VLVGLPGGGPIPLLPAFLLILKEISIVGSLV-GTRADLEEALDFAAEGKIKPEILETIPLDEINEAYERMEKGKVRGRAV  334 (339)
T ss_pred             EEECCCCCcccCCCCHHHhhhcCeEEEEEec-CCHHHHHHHHHHHHhCCceeeEEeeECHHHHHHHHHHHHcCCeeeEEE
Confidence            9999874 55455667778899999999885 789999999999999999999977999999999999999999999999


Q ss_pred             EeC
Q 045248          238 VEP  240 (240)
Q Consensus       238 l~~  240 (240)
                      +++
T Consensus       335 i~~  337 (339)
T COG1064         335 IDM  337 (339)
T ss_pred             ecC
Confidence            874

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=100.00  E-value=3e-39  Score=261.06  Aligned_cols=224  Identities=32%  Similarity=0.448  Sum_probs=189.4

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g   91 (240)
                      .+|+|+||+.+|++.++++|+++|+++||+++++++|||+++....++     ++|++|||+||+|++|++++|+||++|
T Consensus        93 ~~G~~AEy~~v~a~~~~~~P~~ls~~eAAal~~~~~TA~~~l~~~~~l-----~~g~~VLV~gaaGgVG~~aiQlAk~~G  167 (326)
T COG0604          93 RDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGL-----KPGETVLVHGAAGGVGSAAIQLAKALG  167 (326)
T ss_pred             CCCcceeEEEecHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC-----CCCCEEEEecCCchHHHHHHHHHHHcC
Confidence            679999999999999999999999999999999999999999998888     899999999999999999999999999


Q ss_pred             CEEEEE-eCcccHHHHHhcCCCEEEeCCCCc-cc-cccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCc-hH
Q 045248           92 THVTAS-CGARNIEFVKSLGADEVLDYKTPD-GA-ALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGP-SA  167 (240)
Q Consensus        92 ~~v~~~-~~~~~~~~~~~~g~~~v~~~~~~~-~~-~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~-~~  167 (240)
                      +.++++ +++++.++++++|+++++++++.+ .. ..+.+++.++|+|+|++|++.+..++++|+++|+++.+|... ..
T Consensus       168 ~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG~~~~~~~l~~l~~~G~lv~ig~~~g~~  247 (326)
T COG0604         168 ATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVGGDTFAASLAALAPGGRLVSIGALSGGP  247 (326)
T ss_pred             CcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECCCHHHHHHHHHHhccCCEEEEEecCCCCC
Confidence            754444 466777899999999999998887 23 346677789999999999999999999999999999999866 33


Q ss_pred             HHHHHHhhheeccceeeeEEEcCC-----HHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHc-CCCcccEEEeC
Q 045248          168 MLTFALKKLTFSKKQLVPLLLIPK-----RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESID-GHATGKIIVEP  240 (240)
Q Consensus       168 ~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~-~~~~gkvvl~~  240 (240)
                      ...++...+..+..+..+......     .+.+.++.+++++|++++.++.+||++|..++...... ++..||+|+++
T Consensus       248 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~g~l~~~i~~~~~l~e~~~a~a~~~~~~~~~GKvvl~~  326 (326)
T COG0604         248 PVPLNLLPLLGKRLTLRGVTLGSRDPEALAEALAELFDLLASGKLKPVIDRVYPLAEAPAAAAHLLLERRTTGKVVLKV  326 (326)
T ss_pred             ccccCHHHHhhccEEEEEecceecchHHHHHHHHHHHHHHHcCCCcceeccEechhhhHHHHHHHHcccCCcceEEEeC
Confidence            333444555566666666655433     56788999999999999999999999995444444443 58899999975

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=6.5e-37  Score=228.23  Aligned_cols=231  Identities=28%  Similarity=0.336  Sum_probs=199.5

Q ss_pred             ceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHH
Q 045248            5 WRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAV   84 (240)
Q Consensus         5 ~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~   84 (240)
                      .++......|.|+|+..+|...+.++|+.++++++|++.+.++|||..+++..++     ++|++|||+.|+||+|++++
T Consensus        90 DrVayl~~~g~yaee~~vP~~kv~~vpe~i~~k~aaa~llq~lTAy~ll~e~y~v-----kpGhtVlvhaAAGGVGlll~  164 (336)
T KOG1197|consen   90 DRVAYLNPFGAYAEEVTVPSVKVFKVPEAITLKEAAALLLQGLTAYMLLFEAYNV-----KPGHTVLVHAAAGGVGLLLC  164 (336)
T ss_pred             cEEEEeccchhhheeccccceeeccCCcccCHHHHHHHHHHHHHHHHHHHHhcCC-----CCCCEEEEEeccccHHHHHH
Confidence            4455666889999999999999999999999999999999999999999999999     99999999999999999999


Q ss_pred             HHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCc-c-ccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEe
Q 045248           85 QLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPD-G-AALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDI  161 (240)
Q Consensus        85 ~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~-~-~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~  161 (240)
                      |+++..|+++|++++. ++++.+++.|+++.|++..++ . ...+.+++.|+|+++|++|.+++...+.+|++.|++|.+
T Consensus       165 Ql~ra~~a~tI~~asTaeK~~~akenG~~h~I~y~~eD~v~~V~kiTngKGVd~vyDsvG~dt~~~sl~~Lk~~G~mVSf  244 (336)
T KOG1197|consen  165 QLLRAVGAHTIATASTAEKHEIAKENGAEHPIDYSTEDYVDEVKKITNGKGVDAVYDSVGKDTFAKSLAALKPMGKMVSF  244 (336)
T ss_pred             HHHHhcCcEEEEEeccHHHHHHHHhcCCcceeeccchhHHHHHHhccCCCCceeeeccccchhhHHHHHHhccCceEEEe
Confidence            9999999999988865 899999999999999999888 3 344678899999999999999999999999999999999


Q ss_pred             CCCchHHHHHHHhhheeccceeeeEEE---cCCHH----HHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcc
Q 045248          162 TPGPSAMLTFALKKLTFSKKQLVPLLL---IPKRE----NLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATG  234 (240)
Q Consensus       162 g~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~g  234 (240)
                      |..+....+++...++.+..++..-++   ...+.    ...+++.++.+|.++..|.++|||+++.+|+..++++...|
T Consensus       245 G~asgl~~p~~l~~ls~k~l~lvrpsl~gYi~g~~el~~~v~rl~alvnsg~lk~~I~~~ypls~vadA~~diesrktvG  324 (336)
T KOG1197|consen  245 GNASGLIDPIPLNQLSPKALQLVRPSLLGYIDGEVELVSYVARLFALVNSGHLKIHIDHVYPLSKVADAHADIESRKTVG  324 (336)
T ss_pred             ccccCCCCCeehhhcChhhhhhccHhhhcccCCHHHHHHHHHHHHHHhhcCccceeeeeecchHHHHHHHHHHHhhhccc
Confidence            976655555555555555544332222   12222    35688899999999999999999999999999999999999


Q ss_pred             cEEEeC
Q 045248          235 KIIVEP  240 (240)
Q Consensus       235 kvvl~~  240 (240)
                      |+++.+
T Consensus       325 kvlLlp  330 (336)
T KOG1197|consen  325 KVLLLP  330 (336)
T ss_pred             eEEEeC
Confidence            999864

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=6.9e-36  Score=241.68  Aligned_cols=226  Identities=36%  Similarity=0.519  Sum_probs=187.9

Q ss_pred             ccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhh------CCCcCCCCCCCeEEEEcCCchHHHH
Q 045248            9 VSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSA------GVKLDGSGQQKNILVTAASGGVGHY   82 (240)
Q Consensus         9 ~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~------~~~~~~~~~g~~vlV~G~~g~vG~~   82 (240)
                      .....|+|+||+++|+..++++|++++++++|++|.++.|||+++....      ++     ++|++|||+||+|++|++
T Consensus        99 ~~~~~g~~aey~v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~~~~~~-----~~g~~vLv~ggsggVG~~  173 (347)
T KOG1198|consen   99 AFLSSGGLAEYVVVPEKLLVKIPESLSFEEAAALPLAALTALSALFQLAPGKRSKKL-----SKGKSVLVLGGSGGVGTA  173 (347)
T ss_pred             eccCCCceeeEEEcchhhccCCCCccChhhhhcCchHHHHHHHHHHhcccccccccc-----CCCCeEEEEeCCcHHHHH
Confidence            4456799999999999999999999999999999999999999998888      78     899999999999999999


Q ss_pred             HHHHHHhCC-CEEEEEeCcccHHHHHhcCCCEEEeCCCCc-cccc-cCCCCCcccEEEeCCCCCCccccccCCCCCcEEE
Q 045248           83 AVQLAKLGN-THVTASCGARNIEFVKSLGADEVLDYKTPD-GAAL-KSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVI  159 (240)
Q Consensus        83 ~~~~a~~~g-~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~-~~~~-~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv  159 (240)
                      ++|+|+++| ++|+++++.++.+.++++|+++++||++++ ...+ ..+ +.+||+||||+|+.+......++...|+..
T Consensus       174 aiQlAk~~~~~~v~t~~s~e~~~l~k~lGAd~vvdy~~~~~~e~~kk~~-~~~~DvVlD~vg~~~~~~~~~~l~~~g~~~  252 (347)
T KOG1198|consen  174 AIQLAKHAGAIKVVTACSKEKLELVKKLGADEVVDYKDENVVELIKKYT-GKGVDVVLDCVGGSTLTKSLSCLLKGGGGA  252 (347)
T ss_pred             HHHHHHhcCCcEEEEEcccchHHHHHHcCCcEeecCCCHHHHHHHHhhc-CCCccEEEECCCCCccccchhhhccCCceE
Confidence            999999999 588888899999999999999999999977 2333 344 889999999999988888888888887644


Q ss_pred             EeCCCchHHHHH------------HHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHH
Q 045248          160 DITPGPSAMLTF------------ALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAES  227 (240)
Q Consensus       160 ~~g~~~~~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~  227 (240)
                      .++.........            .......++.........++.+.++.+.++++.+++++.+.+.||++++++|++.+
T Consensus       253 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ie~gkikp~i~~~~p~~~~~ea~~~~  332 (347)
T KOG1198|consen  253 YIGLVGDELANYKLDDLWQSANGIKLYSLGLKGVNYRWLYFVPSAEYLKALVELIEKGKIKPVIDSVYPFSQAKEAFEKL  332 (347)
T ss_pred             EEEeccccccccccccchhhhhhhhheeeeeeccceeeeeecCCHHHHHHHHHHHHcCcccCCcceeeeHHHHHHHHHHH
Confidence            443211100000            11122233334444444678999999999999999999999999999999999999


Q ss_pred             HcCCCcccEEEeC
Q 045248          228 IDGHATGKIIVEP  240 (240)
Q Consensus       228 ~~~~~~gkvvl~~  240 (240)
                      .++..+||+++.+
T Consensus       333 ~~~~~~GK~vl~~  345 (347)
T KOG1198|consen  333 EKSHATGKVVLEK  345 (347)
T ss_pred             hhcCCcceEEEEe
Confidence            9999999999864

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.3e-35  Score=228.97  Aligned_cols=228  Identities=19%  Similarity=0.255  Sum_probs=191.5

Q ss_pred             cccceeccc-CCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHH
Q 045248            2 CNLWRIDVS-HNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVG   80 (240)
Q Consensus         2 c~~~~~~~~-~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG   80 (240)
                      |++..+-+. +.+|++++|++++++.++|+||++|++++|++.- +.+++|+. +++++     +.|.+|||+| +|++|
T Consensus       111 Cp~m~f~atpp~~G~la~y~~~~~dfc~KLPd~vs~eeGAl~eP-LsV~~HAc-r~~~v-----k~Gs~vLV~G-AGPIG  182 (354)
T KOG0024|consen  111 CPHMVFCATPPVDGTLAEYYVHPADFCYKLPDNVSFEEGALIEP-LSVGVHAC-RRAGV-----KKGSKVLVLG-AGPIG  182 (354)
T ss_pred             CCccccccCCCcCCceEEEEEechHheeeCCCCCchhhcccccc-hhhhhhhh-hhcCc-----ccCCeEEEEC-CcHHH
Confidence            555555444 4479999999999999999999999999999932 45999999 89999     9999999999 99999


Q ss_pred             HHHHHHHHhCCC-EEEEEe-CcccHHHHHhcCCCEEEeCCCCc-cc----ccc-CCCCCcccEEEeCCCC-CCccccccC
Q 045248           81 HYAVQLAKLGNT-HVTASC-GARNIEFVKSLGADEVLDYKTPD-GA----ALK-SPSGRKYDAVIHCATG-IPWSTFEPN  151 (240)
Q Consensus        81 ~~~~~~a~~~g~-~v~~~~-~~~~~~~~~~~g~~~v~~~~~~~-~~----~~~-~~~~~~~d~v~d~~g~-~~~~~~~~~  151 (240)
                      +++...||++|+ +|+.++ .+.|++.++++|++.+.+....+ ..    .++ ..+...+|+.|||+|. .+++.++..
T Consensus       183 l~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a  262 (354)
T KOG0024|consen  183 LLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFDCSGAEVTIRAAIKA  262 (354)
T ss_pred             HHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEEEccCchHHHHHHHHH
Confidence            999999999999 888888 46899999999999887655433 11    122 2333569999999997 459999999


Q ss_pred             CCCCcEEEEeCCCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceE--EecCceecchhHHHHHHHHHc
Q 045248          152 LGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLK--TVINSKHPLSKAEDAWAESID  229 (240)
Q Consensus       152 l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~a~~~~~~  229 (240)
                      ++.+|++++.|+..+ ...++......++++++|++ .+.+.+|+.+++++++|++.  +++|++|++++..+||+.+.+
T Consensus       263 ~r~gGt~vlvg~g~~-~~~fpi~~v~~kE~~~~g~f-ry~~~~y~~ai~li~sGki~~k~lIT~r~~~~~~~eAf~~~~~  340 (354)
T KOG0024|consen  263 TRSGGTVVLVGMGAE-EIQFPIIDVALKEVDLRGSF-RYCNGDYPTAIELVSSGKIDVKPLITHRYKFDDADEAFETLQH  340 (354)
T ss_pred             hccCCEEEEeccCCC-ccccChhhhhhheeeeeeee-eeccccHHHHHHHHHcCCcCchhheecccccchHHHHHHHHHh
Confidence            999999999987654 45677788889999999987 57788999999999999865  799999999999999999998


Q ss_pred             CCCc-ccEEEe
Q 045248          230 GHAT-GKIIVE  239 (240)
Q Consensus       230 ~~~~-gkvvl~  239 (240)
                      ++.. -|++++
T Consensus       341 ~~~~~iKv~i~  351 (354)
T KOG0024|consen  341 GEEGVIKVIIT  351 (354)
T ss_pred             CcCCceEEEEe
Confidence            8743 377765

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.2e-35  Score=227.26  Aligned_cols=229  Identities=24%  Similarity=0.337  Sum_probs=193.3

Q ss_pred             Ccc--cceecccCCC-----cccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEE
Q 045248            1 MCN--LWRIDVSHNG-----GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT   73 (240)
Q Consensus         1 ~c~--~~~~~~~~~~-----G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~   73 (240)
                      +|+  .+.+.+...+     |+|++|+++++.++++||++++.++||.+.|+..|+|+.| .+.++     .||+++.|.
T Consensus       115 yCpk~~~t~~g~~~DGt~~~ggf~~~~~v~~~~a~kIP~~~pl~~aAPlLCaGITvYspL-k~~g~-----~pG~~vgI~  188 (360)
T KOG0023|consen  115 YCPKMHFTYNGVYHDGTITQGGFQEYAVVDEVFAIKIPENLPLASAAPLLCAGITVYSPL-KRSGL-----GPGKWVGIV  188 (360)
T ss_pred             cCCceeEeccccccCCCCccCccceeEEEeeeeEEECCCCCChhhccchhhcceEEeehh-HHcCC-----CCCcEEEEe
Confidence            577  5555555444     5599999999999999999999999999999999999999 88888     899999999


Q ss_pred             cCCchHHHHHHHHHHhCCCEEEEEeCc--ccHHHHHhcCCCEEEeCCCC-c-cccccCCCCCcccEEEeCCCCCCccccc
Q 045248           74 AASGGVGHYAVQLAKLGNTHVTASCGA--RNIEFVKSLGADEVLDYKTP-D-GAALKSPSGRKYDAVIHCATGIPWSTFE  149 (240)
Q Consensus        74 G~~g~vG~~~~~~a~~~g~~v~~~~~~--~~~~~~~~~g~~~v~~~~~~-~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~  149 (240)
                      | .||+|++++|+||++|.+|++++++  ++.+.++.+|++..++..++ + -+.+..+-..++|-+.+. ....+..++
T Consensus       189 G-lGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~-a~~~~~~~~  266 (360)
T KOG0023|consen  189 G-LGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL-AEHALEPLL  266 (360)
T ss_pred             c-CcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec-cccchHHHH
Confidence            9 6779999999999999999999975  56666688999998887743 3 223333333444444444 335589999


Q ss_pred             cCCCCCcEEEEeCCCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHc
Q 045248          150 PNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESID  229 (240)
Q Consensus       150 ~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~  229 (240)
                      .+++++|++|.+|.+.. +..++...+.+.++.|.|+.. .++.+.+++++++..+.+++.++ ..+++++++||+.+.+
T Consensus       267 ~~lk~~Gt~V~vg~p~~-~~~~~~~~lil~~~~I~GS~v-G~~ket~E~Ldf~a~~~ik~~IE-~v~~~~v~~a~erm~k  343 (360)
T KOG0023|consen  267 GLLKVNGTLVLVGLPEK-PLKLDTFPLILGRKSIKGSIV-GSRKETQEALDFVARGLIKSPIE-LVKLSEVNEAYERMEK  343 (360)
T ss_pred             HHhhcCCEEEEEeCcCC-cccccchhhhcccEEEEeecc-ccHHHHHHHHHHHHcCCCcCceE-EEehhHHHHHHHHHHh
Confidence            99999999999998876 677778888899999999886 89999999999999999999886 8899999999999999


Q ss_pred             CCCcccEEEeC
Q 045248          230 GHATGKIIVEP  240 (240)
Q Consensus       230 ~~~~gkvvl~~  240 (240)
                      ++..+|.|+++
T Consensus       344 gdV~yRfVvD~  354 (360)
T KOG0023|consen  344 GDVRYRFVVDV  354 (360)
T ss_pred             cCeeEEEEEEc
Confidence            99999999864

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=100.00  E-value=4.7e-34  Score=234.28  Aligned_cols=217  Identities=17%  Similarity=0.221  Sum_probs=178.2

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g   91 (240)
                      .+|+|+||++++++.++++|+++++++++.. ..+.++|+++ .....     .++++|+|+| +|++|++++|+|+.+|
T Consensus       122 ~~G~~aey~~v~~~~~~~~P~~l~~~~aa~~-~~~~~a~~al-~~~~~-----~~g~~VlV~G-~G~vG~~aiqlak~~G  193 (343)
T PRK09880        122 VDGGFTRYKVVDTAQCIPYPEKADEKVMAFA-EPLAVAIHAA-HQAGD-----LQGKRVFVSG-VGPIGCLIVAAVKTLG  193 (343)
T ss_pred             CCCceeeeEEechHHeEECCCCCCHHHHHhh-cHHHHHHHHH-HhcCC-----CCCCEEEEEC-CCHHHHHHHHHHHHcC
Confidence            4799999999999999999999998876543 4556999999 44455     5799999999 6999999999999999


Q ss_pred             C-EEEEEeC-cccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC-CccccccCCCCCcEEEEeCCCchHH
Q 045248           92 T-HVTASCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTNGKVIDITPGPSAM  168 (240)
Q Consensus        92 ~-~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~g~~~~~~  168 (240)
                      + +|+++++ +++++.++++|++.++++++.+........ .++|++||++|++ .+..++++++++|+++.+|.... .
T Consensus       194 ~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~-g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~-~  271 (343)
T PRK09880        194 AAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEK-GYFDVSFEVSGHPSSINTCLEVTRAKGVMVQVGMGGA-P  271 (343)
T ss_pred             CcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccC-CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCC-C
Confidence            9 6888885 589999999999999987765532222222 3699999999985 58899999999999999996433 2


Q ss_pred             HHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEE--ecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          169 LTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKT--VINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       169 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      .+++...+..++.++.+++.  ..+.++++++++++|++++  +++++|+++|+++||+.+.++...||+++.+
T Consensus       272 ~~~~~~~~~~k~~~i~g~~~--~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  343 (343)
T PRK09880        272 PEFPMMTLIVKEISLKGSFR--FTEEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALIFAGDKTQAAKVQLVF  343 (343)
T ss_pred             CccCHHHHHhCCcEEEEEee--ccccHHHHHHHHHcCCCCchhheEEEEEHHHHHHHHHHHhcCCCceEEEEeC
Confidence            23445556688888988764  3567999999999999875  7789999999999999999888789999875

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=2e-33  Score=229.12  Aligned_cols=220  Identities=19%  Similarity=0.189  Sum_probs=183.5

Q ss_pred             cccceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHH
Q 045248            2 CNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGH   81 (240)
Q Consensus         2 c~~~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~   81 (240)
                      |++..+.+...+|+|+||+.+++..++++|+++++++++.+++.+.|||+++ ...++     ++|++|||+| +|++|+
T Consensus       107 c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~-~~~~~-----~~g~~VlV~G-~g~iG~  179 (329)
T TIGR02822       107 CPASRYTGWDTDGGYAEYTTVPAAFAYRLPTGYDDVELAPLLCAGIIGYRAL-LRASL-----PPGGRLGLYG-FGGSAH  179 (329)
T ss_pred             CCCcccCCcccCCcceeEEEeccccEEECCCCCCHHHhHHHhccchHHHHHH-HhcCC-----CCCCEEEEEc-CCHHHH
Confidence            4554555555689999999999999999999999999999999999999999 46777     8999999999 599999


Q ss_pred             HHHHHHHhCCCEEEEEeC-cccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC-CCccccccCCCCCcEEE
Q 045248           82 YAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVI  159 (240)
Q Consensus        82 ~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv  159 (240)
                      +++|+|+.+|++|+++++ +++++.++++|+++++++.+..        .+++|+++++.+. ..+..++++++++|+++
T Consensus       180 ~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~--------~~~~d~~i~~~~~~~~~~~~~~~l~~~G~~v  251 (329)
T TIGR02822       180 LTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTP--------PEPLDAAILFAPAGGLVPPALEALDRGGVLA  251 (329)
T ss_pred             HHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccC--------cccceEEEECCCcHHHHHHHHHhhCCCcEEE
Confidence            999999999999998886 4889999999999998754321        2468999988875 45889999999999999


Q ss_pred             EeCCCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEE
Q 045248          160 DITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIV  238 (240)
Q Consensus       160 ~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl  238 (240)
                      .+|........++...+.+++.++.+++. ..++.+.+++++++++++++ ++++|+|+|+++||+.+.+++..||+|+
T Consensus       252 ~~G~~~~~~~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~l~~~g~i~~-i~~~~~l~~~~~A~~~~~~~~~~Gkvvl  328 (329)
T TIGR02822       252 VAGIHLTDTPPLNYQRHLFYERQIRSVTS-NTRADAREFLELAAQHGVRV-TTHTYPLSEADRALRDLKAGRFDGAAVL  328 (329)
T ss_pred             EEeccCccCCCCCHHHHhhCCcEEEEeec-CCHHHHHHHHHHHHhCCCee-EEEEEeHHHHHHHHHHHHcCCCceEEEe
Confidence            99964322222334455577888888763 56778999999999999974 5789999999999999999999999987

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=100.00  E-value=1.3e-33  Score=231.50  Aligned_cols=222  Identities=23%  Similarity=0.309  Sum_probs=185.2

Q ss_pred             ccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHH
Q 045248            9 VSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAK   88 (240)
Q Consensus         9 ~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~   88 (240)
                      +...+|+|+||+.++++.++++|+++++++++++++++.|||+++ ...++     .+|++|||+| +|++|++++|+|+
T Consensus       112 g~~~~G~~ae~~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l-~~~~~-----~~g~~vlV~G-~G~vG~~~~~~ak  184 (339)
T cd08239         112 GWNRDGGHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYHAL-RRVGV-----SGRDTVLVVG-AGPVGLGALMLAR  184 (339)
T ss_pred             ccCCCCcceeEEEechHHeEECCCCCCHHHhhhhcchHHHHHHHH-HhcCC-----CCCCEEEEEC-CCHHHHHHHHHHH
Confidence            444579999999999999999999999999999999999999999 56677     7899999998 6999999999999


Q ss_pred             hCCCE-EEEEeCc-ccHHHHHhcCCCEEEeCCCCcccc-ccCCCCCcccEEEeCCCCCC-ccccccCCCCCcEEEEeCCC
Q 045248           89 LGNTH-VTASCGA-RNIEFVKSLGADEVLDYKTPDGAA-LKSPSGRKYDAVIHCATGIP-WSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus        89 ~~g~~-v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~-~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~g~~  164 (240)
                      .+|++ |++++++ ++.+.++++|++.++++.+.+... .+.+.+.++|++||++|+.. +..++++++++|+++.+|..
T Consensus       185 ~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~  264 (339)
T cd08239         185 ALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNTAARRLALEAVRPWGRLVLVGEG  264 (339)
T ss_pred             HcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCC
Confidence            99997 9988864 788999999999999876543222 23445568999999999865 57889999999999999865


Q ss_pred             chHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceE--EecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          165 PSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLK--TVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      ...... ....+.++++++.+++. .+.+.++++++++++|+++  ++++++|+++++++||+.+.++. .||+|+++
T Consensus       265 ~~~~~~-~~~~~~~~~~~i~g~~~-~~~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~-~gKvvi~~  339 (339)
T cd08239         265 GELTIE-VSNDLIRKQRTLIGSWY-FSVPDMEECAEFLARHKLEVDRLVTHRFGLDQAPEAYALFAQGE-SGKVVFVF  339 (339)
T ss_pred             CCcccC-cHHHHHhCCCEEEEEec-CCHHHHHHHHHHHHcCCCChhHeEEEEecHHHHHHHHHHHHcCC-ceEEEEeC
Confidence            432211 12345678889998774 4677899999999999986  47889999999999999998876 79999874

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=100.00  E-value=1.5e-33  Score=231.46  Aligned_cols=222  Identities=24%  Similarity=0.294  Sum_probs=181.4

Q ss_pred             cccceEEEecCCc--ee--eCCCCCChh-hhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHH
Q 045248           14 GGLAEFAVAKESS--TV--ARPSEVSAA-EGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAK   88 (240)
Q Consensus        14 G~~~e~~~v~~~~--~~--~ip~~~~~~-~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~   88 (240)
                      |+|+||++++++.  ++  ++|++++++ +++++++++.|||+++.+..++     ++|++|||+|++|++|++++|+|+
T Consensus       106 ~~~aey~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~-----~~g~~VlV~GaaG~vG~~aiqlAk  180 (348)
T PLN03154        106 TGWEEYSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSP-----KKGDSVFVSAASGAVGQLVGQLAK  180 (348)
T ss_pred             CCcEEEEEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCC-----CCCCEEEEecCccHHHHHHHHHHH
Confidence            7899999998853  54  459999987 6888899999999999777888     899999999988999999999999


Q ss_pred             hCCCEEEEEeCc-ccHHHHH-hcCCCEEEeCCCC-c-cccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248           89 LGNTHVTASCGA-RNIEFVK-SLGADEVLDYKTP-D-GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus        89 ~~g~~v~~~~~~-~~~~~~~-~~g~~~v~~~~~~-~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      .+|++|++++++ ++.+.++ ++|++.++++.+. + ...+....++++|++||++|+..+..++++++++|+++.+|..
T Consensus       181 ~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~vG~~~~~~~~~~l~~~G~iv~~G~~  260 (348)
T PLN03154        181 LHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNVGGDMLDAALLNMKIHGRIAVCGMV  260 (348)
T ss_pred             HcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECCCHHHHHHHHHHhccCCEEEEECcc
Confidence            999999988864 7888887 7999999998653 3 2233332346899999999987888999999999999999964


Q ss_pred             chHHH-----HHHHhhheeccceeeeEEEcC----CHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCccc
Q 045248          165 PSAML-----TFALKKLTFSKKQLVPLLLIP----KRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGK  235 (240)
Q Consensus       165 ~~~~~-----~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gk  235 (240)
                      .....     ..+...+..+++++.+++...    ..+.++++++++++|++++.++.+|+|+++++||+.+.+++..||
T Consensus       261 ~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~~~l~~~G~l~~~~~~~~~L~~~~~A~~~l~~g~~~GK  340 (348)
T PLN03154        261 SLNSLSASQGIHNLYNLISKRIRMQGFLQSDYLHLFPQFLENVSRYYKQGKIVYIEDMSEGLESAPAALVGLFSGKNVGK  340 (348)
T ss_pred             ccCCCCCCCCcccHHHHhhccceEEEEEHHHHHHHHHHHHHHHHHHHHCCCccCceecccCHHHHHHHHHHHHcCCCCce
Confidence            32211     112334567788888876421    245688899999999999888889999999999999999999999


Q ss_pred             EEEeC
Q 045248          236 IIVEP  240 (240)
Q Consensus       236 vvl~~  240 (240)
                      +|+++
T Consensus       341 vVl~~  345 (348)
T PLN03154        341 QVIRV  345 (348)
T ss_pred             EEEEe
Confidence            99874

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=100.00  E-value=5.1e-33  Score=229.27  Aligned_cols=218  Identities=19%  Similarity=0.256  Sum_probs=177.9

Q ss_pred             CCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhC
Q 045248           11 HNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLG   90 (240)
Q Consensus        11 ~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~   90 (240)
                      ..+|+|+||++++++.++++|+++++++++++++.+.|+|+++.....+     ++|++|+|.| +|++|++++|+|+.+
T Consensus       133 ~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~-----~~g~~VlV~G-~G~vG~~avq~Ak~~  206 (360)
T PLN02586        133 KNYGGYSDMIVVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMT-----EPGKHLGVAG-LGGLGHVAVKIGKAF  206 (360)
T ss_pred             cCCCccceEEEEchHHeeeCCCCCCHHHhhhhhcchHHHHHHHHHhccc-----CCCCEEEEEC-CCHHHHHHHHHHHHC
Confidence            3479999999999999999999999999999999999999999666656     7899999988 799999999999999


Q ss_pred             CCEEEEEeC-cc-cHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC-CccccccCCCCCcEEEEeCCCchH
Q 045248           91 NTHVTASCG-AR-NIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTNGKVIDITPGPSA  167 (240)
Q Consensus        91 g~~v~~~~~-~~-~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~g~~~~~  167 (240)
                      |++|++++. ++ +.+.++++|++.++++.+.+ ...+.+ + ++|++||++|.. .+..++++++++|+++.+|.... 
T Consensus       207 Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~-~~~~~~-~-~~D~vid~~g~~~~~~~~~~~l~~~G~iv~vG~~~~-  282 (360)
T PLN02586        207 GLKVTVISSSSNKEDEAINRLGADSFLVSTDPE-KMKAAI-G-TMDYIIDTVSAVHALGPLLGLLKVNGKLITLGLPEK-  282 (360)
T ss_pred             CCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHH-HHHhhc-C-CCCEEEECCCCHHHHHHHHHHhcCCcEEEEeCCCCC-
Confidence            999888774 34 45666899999998765432 112222 2 699999999974 58889999999999999986432 


Q ss_pred             HHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          168 MLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       168 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      ...++...+..++..+.+++. .....++++++++++|++++.+ ++|+|+|+++||+.+.+++..||+|+++
T Consensus       283 ~~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~li~~g~i~~~~-~~~~l~~~~~A~~~~~~~~~~gkvvi~~  353 (360)
T PLN02586        283 PLELPIFPLVLGRKLVGGSDI-GGIKETQEMLDFCAKHNITADI-ELIRMDEINTAMERLAKSDVRYRFVIDV  353 (360)
T ss_pred             CCccCHHHHHhCCeEEEEcCc-CCHHHHHHHHHHHHhCCCCCcE-EEEeHHHHHHHHHHHHcCCCcEEEEEEc
Confidence            223344445566777777653 4667899999999999998766 5899999999999999998889999874

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=100.00  E-value=4.1e-33  Score=230.98  Aligned_cols=219  Identities=21%  Similarity=0.255  Sum_probs=184.2

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      .|+|+||++++++.++++|+++++++++++++.+.|||+++.+..++     +++++|||.| +|++|++++|+|+.+|+
T Consensus       143 ~G~~aey~~v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i-----~~g~~VlV~G-~G~vG~~a~~lak~~G~  216 (371)
T cd08281         143 VSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGV-----RPGQSVAVVG-LGGVGLSALLGAVAAGA  216 (371)
T ss_pred             cccceeeEEecccceEECCCCCChHHhhhhcchHHHHHHHHHhccCC-----CCCCEEEEEC-CCHHHHHHHHHHHHcCC
Confidence            37999999999999999999999999999999999999998777888     8999999999 79999999999999999


Q ss_pred             -EEEEEeC-cccHHHHHhcCCCEEEeCCCCc-cccc-cCCCCCcccEEEeCCCCC-CccccccCCCCCcEEEEeCCCch-
Q 045248           93 -HVTASCG-ARNIEFVKSLGADEVLDYKTPD-GAAL-KSPSGRKYDAVIHCATGI-PWSTFEPNLGTNGKVIDITPGPS-  166 (240)
Q Consensus        93 -~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~-~~~~-~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~g~~~~-  166 (240)
                       +|+++++ +++++.++++|++.++++.+.+ ...+ +.+.+ ++|++|||+|.. .+..++++++++|+++.+|.... 
T Consensus       217 ~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~-g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~  295 (371)
T cd08281         217 SQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGG-GVDYAFEMAGSVPALETAYEITRRGGTTVTAGLPDPE  295 (371)
T ss_pred             CcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCC-CCCEEEECCCChHHHHHHHHHHhcCCEEEEEccCCCC
Confidence             7988886 4889999999999999876654 2223 33343 899999999974 58889999999999999996532 


Q ss_pred             HHHHHHHhhheeccceeeeEEEc--CCHHHHHHHHHHHHCCceEE--ecCceecchhHHHHHHHHHcCCCcccEEE
Q 045248          167 AMLTFALKKLTFSKKQLVPLLLI--PKRENLDFLVKLVKEGKLKT--VINSKHPLSKAEDAWAESIDGHATGKIIV  238 (240)
Q Consensus       167 ~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvl  238 (240)
                      ....++...+..+++++.+++..  ...++++++++++++|++++  +++++|+|+|+++||+.+.+++..+|+|+
T Consensus       296 ~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~vi~  371 (371)
T cd08281         296 ARLSVPALSLVAEERTLKGSYMGSCVPRRDIPRYLALYLSGRLPVDKLLTHRLPLDEINEGFDRLAAGEAVRQVIL  371 (371)
T ss_pred             ceeeecHHHHhhcCCEEEEEecCCCChHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCceeeeeC
Confidence            22334455667788999997642  13578999999999999874  78899999999999999999998888764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=7.7e-33  Score=229.00  Aligned_cols=218  Identities=18%  Similarity=0.234  Sum_probs=179.8

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g   91 (240)
                      .+|+|+||++++++.++++|+++++++++++++.+.|+|+++.......    +++++|+|.| +|++|++++|+|+.+|
T Consensus       128 ~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~----~~g~~VlV~G-~G~vG~~avq~Ak~~G  202 (375)
T PLN02178        128 NQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTK----ESGKRLGVNG-LGGLGHIAVKIGKAFG  202 (375)
T ss_pred             CCCccccEEEEchHHeEECCCCCCHHHcchhhccchHHHHHHHHhCCCC----CCCCEEEEEc-ccHHHHHHHHHHHHcC
Confidence            4799999999999999999999999999999999999999984443210    5899999998 7999999999999999


Q ss_pred             CEEEEEeCc-c-cHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC-CccccccCCCCCcEEEEeCCCchHH
Q 045248           92 THVTASCGA-R-NIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTNGKVIDITPGPSAM  168 (240)
Q Consensus        92 ~~v~~~~~~-~-~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~g~~~~~~  168 (240)
                      ++|+++++. + +.+.++++|+++++++.+. ....+.+  .++|++||++|.. .+..++++++++|+++.+|.... .
T Consensus       203 a~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~-~~v~~~~--~~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~~~-~  278 (375)
T PLN02178        203 LRVTVISRSSEKEREAIDRLGADSFLVTTDS-QKMKEAV--GTMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLPEK-P  278 (375)
T ss_pred             CeEEEEeCChHHhHHHHHhCCCcEEEcCcCH-HHHHHhh--CCCcEEEECCCcHHHHHHHHHhhcCCCEEEEEccCCC-C
Confidence            999888853 3 4788899999999886542 1222222  2699999999986 58899999999999999996532 2


Q ss_pred             HHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          169 LTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       169 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      ..++...+.++++++.+++. ...++++++++++++|++++.+ ++|+|+|+++||+.+.+++..||+|+.+
T Consensus       279 ~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~l~~~g~i~~~i-~~~~l~~~~~A~~~~~~~~~~gkvvi~~  348 (375)
T PLN02178        279 LDLPIFPLVLGRKMVGGSQI-GGMKETQEMLEFCAKHKIVSDI-ELIKMSDINSAMDRLAKSDVRYRFVIDV  348 (375)
T ss_pred             CccCHHHHHhCCeEEEEeCc-cCHHHHHHHHHHHHhCCCcccE-EEEeHHHHHHHHHHHHcCCCceEEEEEe
Confidence            33445556678888988764 5677899999999999998876 5799999999999999998889999864

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=2.3e-32  Score=224.70  Aligned_cols=231  Identities=18%  Similarity=0.210  Sum_probs=182.4

Q ss_pred             cccceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHH
Q 045248            2 CNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGH   81 (240)
Q Consensus         2 c~~~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~   81 (240)
                      |......+....|+|+||+.++++.++++|+++++++++++. .+.++++++ ....+     +++++|+|+| +|++|+
T Consensus       103 c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~s~~~aa~~~-~~~~~~~~~-~~~~~-----~~g~~vlV~G-~g~vG~  174 (347)
T PRK10309        103 CAKYDFIGSRRDGGNAEYIVVKRKNLFALPTDMPIEDGAFIE-PITVGLHAF-HLAQG-----CEGKNVIIIG-AGTIGL  174 (347)
T ss_pred             CCCcceeccCCCCccceeEEeehHHeEECcCCCCHHHhhhhh-HHHHHHHHH-HhcCC-----CCCCEEEEEC-CCHHHH
Confidence            333333444568999999999999999999999999998873 234678876 56666     7899999998 799999


Q ss_pred             HHHHHHHhCCCE-EEEEeC-cccHHHHHhcCCCEEEeCCCCc-cccccCCCCCccc-EEEeCCCCC-CccccccCCCCCc
Q 045248           82 YAVQLAKLGNTH-VTASCG-ARNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYD-AVIHCATGI-PWSTFEPNLGTNG  156 (240)
Q Consensus        82 ~~~~~a~~~g~~-v~~~~~-~~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d-~v~d~~g~~-~~~~~~~~l~~~G  156 (240)
                      +++|+|+.+|++ |+++++ +++.+.++++|++.++++.+.+ ....+.+.+.++| ++|||+|+. .+..++++++++|
T Consensus       175 ~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~G  254 (347)
T PRK10309        175 LAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETAGVPQTVELAIEIAGPRA  254 (347)
T ss_pred             HHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECCCCHHHHHHHHHHhhcCC
Confidence            999999999995 677775 4788899999999999876544 2233445556898 999999975 5889999999999


Q ss_pred             EEEEeCCCchH-HH-HHHHhhheeccceeeeEEEcC----CHHHHHHHHHHHHCCceE--EecCceecchhHHHHHHHHH
Q 045248          157 KVIDITPGPSA-ML-TFALKKLTFSKKQLVPLLLIP----KRENLDFLVKLVKEGKLK--TVINSKHPLSKAEDAWAESI  228 (240)
Q Consensus       157 ~iv~~g~~~~~-~~-~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~a~~~~~  228 (240)
                      +++.+|..... .. ......+..++.++.+++...    ..+.++++++++++|+++  ++++++|+|+|+++||+.+.
T Consensus       255 ~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~A~~~~~  334 (347)
T PRK10309        255 QLALVGTLHHDLHLTSATFGKILRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDLA  334 (347)
T ss_pred             EEEEEccCCCCcccChhhhhHHhhcCcEEEEEeccccCCcchhHHHHHHHHHHcCCCCchhheEEEeeHHHHHHHHHHHh
Confidence            99999964322 11 112234567788898876421    247789999999999984  68899999999999999999


Q ss_pred             cCCCcccEEEeC
Q 045248          229 DGHATGKIIVEP  240 (240)
Q Consensus       229 ~~~~~gkvvl~~  240 (240)
                      ++...||+|+++
T Consensus       335 ~~~~~gKvvv~~  346 (347)
T PRK10309        335 GNPMPGKVLLQI  346 (347)
T ss_pred             cCCcceEEEEeC
Confidence            988889999875

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=100.00  E-value=3.2e-33  Score=217.60  Aligned_cols=223  Identities=20%  Similarity=0.203  Sum_probs=189.0

Q ss_pred             ccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHH
Q 045248            9 VSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAK   88 (240)
Q Consensus         9 ~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~   88 (240)
                      .+...++|+||.++++..++|++++.+++.++.+.|...|.+.+..+.+++     ++|++|.|.| .|++|++++|-|+
T Consensus       133 h~lG~stFa~y~vv~~~s~vki~~~~p~~~a~llGCgV~TG~Gav~nta~v-----~~G~tvaV~G-lGgVGlaaI~gA~  206 (366)
T COG1062         133 HYLGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVVNTAKV-----EPGDTVAVFG-LGGVGLAAIQGAK  206 (366)
T ss_pred             eeeccccchhheeecccceEECCCCCCccceEEEeeeeccChHHhhhcccC-----CCCCeEEEEe-ccHhHHHHHHHHH
Confidence            333346999999999999999999999999999999999999998899999     9999999999 9999999999999


Q ss_pred             hCCC-EEEEEeC-cccHHHHHhcCCCEEEeCCCCc--cccccCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEeCC
Q 045248           89 LGNT-HVTASCG-ARNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus        89 ~~g~-~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~  163 (240)
                      ..|+ ++++++. ++|+++++++|+++++|.++..  ...+....+.|+|++|||+|+ ..+++++.++.++|+.+.+|.
T Consensus       207 ~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv  286 (366)
T COG1062         207 AAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGV  286 (366)
T ss_pred             HcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEec
Confidence            9999 9999995 5999999999999999988763  233444455699999999998 459999999999999999995


Q ss_pred             Cch-HHHHHHHhhheeccceeeeEEEc--CCHHHHHHHHHHHHCCceE--EecCceecchhHHHHHHHHHcCCCcccEEE
Q 045248          164 GPS-AMLTFALKKLTFSKKQLVPLLLI--PKRENLDFLVKLVKEGKLK--TVINSKHPLSKAEDAWAESIDGHATGKIIV  238 (240)
Q Consensus       164 ~~~-~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl  238 (240)
                      .+. ...+...-++. .+++|+|+++.  .-+.++++++++..+|++.  ++++++++|+||||||+++.+++.+ |-|+
T Consensus       287 ~~~~~~i~~~~~~lv-~gr~~~Gs~~G~~~p~~diP~lv~~y~~Gkl~~d~lvt~~~~Le~INeaf~~m~~G~~I-R~Vi  364 (366)
T COG1062         287 AGAGQEISTRPFQLV-TGRVWKGSAFGGARPRSDIPRLVDLYMAGKLPLDRLVTHTIPLEDINEAFDLMHEGKSI-RSVI  364 (366)
T ss_pred             CCCCceeecChHHee-ccceEEEEeecCCccccchhHHHHHHHcCCCchhHHhhccccHHHHHHHHHHHhCCcee-eEEe
Confidence            432 23333333333 34899999873  3467899999999999976  6999999999999999999999977 5554


Q ss_pred             e
Q 045248          239 E  239 (240)
Q Consensus       239 ~  239 (240)
                      .
T Consensus       365 ~  365 (366)
T COG1062         365 R  365 (366)
T ss_pred             c
Confidence            4

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=100.00  E-value=7.9e-32  Score=220.81  Aligned_cols=222  Identities=26%  Similarity=0.319  Sum_probs=181.1

Q ss_pred             cccceEEEecC-CceeeCC-CCCChh-hhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhC
Q 045248           14 GGLAEFAVAKE-SSTVARP-SEVSAA-EGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLG   90 (240)
Q Consensus        14 G~~~e~~~v~~-~~~~~ip-~~~~~~-~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~   90 (240)
                      |+|+||+++++ ..++++| ++++++ +++++++++.|||+++.+..++     ++|++|||+|++|++|++++|+|+.+
T Consensus       101 g~~aey~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~-----~~g~~VlI~Ga~G~vG~~aiqlAk~~  175 (338)
T cd08295         101 TGWEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKP-----KKGETVFVSAASGAVGQLVGQLAKLK  175 (338)
T ss_pred             CCceeEEEecchhceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCC-----CCCCEEEEecCccHHHHHHHHHHHHc
Confidence            68999999999 7999995 678887 7899999999999999777888     89999999998899999999999999


Q ss_pred             CCEEEEEeC-cccHHHHHh-cCCCEEEeCCCC-c-cccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCch
Q 045248           91 NTHVTASCG-ARNIEFVKS-LGADEVLDYKTP-D-GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPS  166 (240)
Q Consensus        91 g~~v~~~~~-~~~~~~~~~-~g~~~v~~~~~~-~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~  166 (240)
                      |++|+++++ +++.+.+++ +|+++++++.+. + ...+....+.++|+++|++|+..+..++++++++|+++.+|....
T Consensus       176 G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~g~~~~~~~~~~l~~~G~iv~~G~~~~  255 (338)
T cd08295         176 GCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVGGKMLDAVLLNMNLHGRIAACGMISQ  255 (338)
T ss_pred             CCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECCCHHHHHHHHHHhccCcEEEEeccccc
Confidence            999998886 478898988 999999986543 3 222332234689999999998778899999999999999985432


Q ss_pred             HHH-----HHHHhhheeccceeeeEEEcCC----HHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEE
Q 045248          167 AML-----TFALKKLTFSKKQLVPLLLIPK----RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKII  237 (240)
Q Consensus       167 ~~~-----~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvv  237 (240)
                      ...     ..+...+.+++.++.+++....    .+.++++++++++|++++.+...|+++++++|++.+.+++..||+|
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~GkvV  335 (338)
T cd08295         256 YNLEWPEGVRNLLNIIYKRVKIQGFLVGDYLHRYPEFLEEMSGYIKEGKLKYVEDIADGLESAPEAFVGLFTGSNIGKQV  335 (338)
T ss_pred             CCCCCCCCccCHHHHhhccceeeEEEehhhHHHHHHHHHHHHHHHHCCCeEceeecccCHHHHHHHHHHHhcCCCCceEE
Confidence            111     1123445567777877553211    3457889999999999987767799999999999999999899999


Q ss_pred             EeC
Q 045248          238 VEP  240 (240)
Q Consensus       238 l~~  240 (240)
                      +++
T Consensus       336 l~~  338 (338)
T cd08295         336 VKV  338 (338)
T ss_pred             EEC
Confidence            875

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=100.00  E-value=9.9e-32  Score=221.04  Aligned_cols=229  Identities=21%  Similarity=0.268  Sum_probs=185.6

Q ss_pred             cccceecccCCCcccceEEEecCCceeeCCC------CCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcC
Q 045248            2 CNLWRIDVSHNGGGLAEFAVAKESSTVARPS------EVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAA   75 (240)
Q Consensus         2 c~~~~~~~~~~~G~~~e~~~v~~~~~~~ip~------~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~   75 (240)
                      |.++...+...+|+|+||+.++++.++++|+      ++++++++++++.+.++|+++. ..++     +++++|+|+|+
T Consensus       102 c~~~~~~g~~~~G~~ae~~~v~~~~~~~ip~~~~~~~~~~~~~~a~~~~~~~ta~~a~~-~~~~-----~~g~~VlV~G~  175 (349)
T TIGR03201       102 CRAQKMPGNDMQGGFASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQAAV-QAGL-----KKGDLVIVIGA  175 (349)
T ss_pred             CCCCCccCcCCCCcccceEEechHHeEECCcccccccCCCHHHhhhhcchHHHHHHHHH-hcCC-----CCCCEEEEECC
Confidence            4444444444579999999999999999999      8999999999999999999994 5667     89999999995


Q ss_pred             CchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHhcCCCEEEeCCCCc----cc-cccCCCCCccc----EEEeCCCCCC-
Q 045248           76 SGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPD----GA-ALKSPSGRKYD----AVIHCATGIP-  144 (240)
Q Consensus        76 ~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~----~~-~~~~~~~~~~d----~v~d~~g~~~-  144 (240)
                       |++|++++|+|+.+|++|+++++ +++++.++++|++.++++.+.+    .. ..+.+.+.++|    ++|||+|+.. 
T Consensus       176 -G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~v~d~~g~~~~  254 (349)
T TIGR03201       176 -GGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWKIFECSGSKPG  254 (349)
T ss_pred             -CHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCEEEECCCChHH
Confidence             99999999999999999998885 4889999999999998876542    11 22345566776    8999999855 


Q ss_pred             ccccccCCCCCcEEEEeCCCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEE--ecCceecchhHHH
Q 045248          145 WSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKT--VINSKHPLSKAED  222 (240)
Q Consensus       145 ~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~  222 (240)
                      +..++++++++|+++.+|..... ..+....+..++.++.+.+. ...++++++++++++|++++  +++ +|+|+++++
T Consensus       255 ~~~~~~~l~~~G~iv~~G~~~~~-~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~i~~g~i~~~~~i~-~~~l~~~~~  331 (349)
T TIGR03201       255 QESALSLLSHGGTLVVVGYTMAK-TEYRLSNLMAFHARALGNWG-CPPDRYPAALDLVLDGKIQLGPFVE-RRPLDQIEH  331 (349)
T ss_pred             HHHHHHHHhcCCeEEEECcCCCC-cccCHHHHhhcccEEEEEec-CCHHHHHHHHHHHHcCCCCcccceE-EecHHHHHH
Confidence            77889999999999999965432 23333445556778888764 46678999999999999864  454 799999999


Q ss_pred             HHHHHHcCCCcccEEEeC
Q 045248          223 AWAESIDGHATGKIIVEP  240 (240)
Q Consensus       223 a~~~~~~~~~~gkvvl~~  240 (240)
                      ||+.+.+++..||+++++
T Consensus       332 A~~~~~~~~~~~k~~~~~  349 (349)
T TIGR03201       332 VFAAAHHHKLKRRAILTP  349 (349)
T ss_pred             HHHHHHcCCccceEEecC
Confidence            999999999889999864

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=100.00  E-value=7.2e-32  Score=222.60  Aligned_cols=220  Identities=19%  Similarity=0.219  Sum_probs=183.2

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      .|+|+||+.+++..++++|+++++++++++++.+.++|+++.+..++     +++++|||+| +|++|++++|+|+.+|+
T Consensus       128 ~G~~aey~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~~~~~~~~-----~~g~~VlV~G-~g~vG~~a~~~ak~~G~  201 (358)
T TIGR03451       128 IGAFAEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAVNTGGV-----KRGDSVAVIG-CGGVGDAAIAGAALAGA  201 (358)
T ss_pred             cccccceEEEehhheEECCCCCChhHhhhhcccchhhHHHHHhccCC-----CCCCEEEEEC-CCHHHHHHHHHHHHcCC
Confidence            69999999999999999999999999999998888999888677777     8999999998 79999999999999999


Q ss_pred             -EEEEEeC-cccHHHHHhcCCCEEEeCCCCc-cc-cccCCCCCcccEEEeCCCCC-CccccccCCCCCcEEEEeCCCch-
Q 045248           93 -HVTASCG-ARNIEFVKSLGADEVLDYKTPD-GA-ALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTNGKVIDITPGPS-  166 (240)
Q Consensus        93 -~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~-~~-~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~g~~~~-  166 (240)
                       +|+++++ +++++.++++|++.++++.+.+ .. ..+.+.+.++|++||++|++ .+..++++++++|+++.+|.... 
T Consensus       202 ~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~G~~~~~  281 (358)
T TIGR03451       202 SKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVGRPETYKQAFYARDLAGTVVLVGVPTPD  281 (358)
T ss_pred             CeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCC
Confidence             5888886 4889999999999999876654 22 33445667899999999974 58899999999999999996532 


Q ss_pred             HHHHHHHhhheeccceeeeEEEc--CCHHHHHHHHHHHHCCceEE--ecCceecchhHHHHHHHHHcCCCcccEEEe
Q 045248          167 AMLTFALKKLTFSKKQLVPLLLI--PKRENLDFLVKLVKEGKLKT--VINSKHPLSKAEDAWAESIDGHATGKIIVE  239 (240)
Q Consensus       167 ~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~  239 (240)
                      ....++...+..++.++.+++..  ...+.++++++++++|++++  +++++|+++|+++||+.+.+++.. |+++.
T Consensus       282 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~-k~~~~  357 (358)
T TIGR03451       282 MTLELPLLDVFGRGGALKSSWYGDCLPERDFPMLVDLYLQGRLPLDAFVTERIGLDDVEEAFDKMHAGDVL-RSVVE  357 (358)
T ss_pred             ceeeccHHHHhhcCCEEEEeecCCCCcHHHHHHHHHHHHcCCCCchheEEEEecHHHHHHHHHHHhCCCcc-eeEEe
Confidence            12233444556677888887542  24678999999999999864  688999999999999999988765 77765

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=99.98  E-value=1.6e-31  Score=217.84  Aligned_cols=221  Identities=22%  Similarity=0.301  Sum_probs=181.8

Q ss_pred             cccceEEEecCCceeeC----CCCCChhhh-hhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHH
Q 045248           14 GGLAEFAVAKESSTVAR----PSEVSAAEG-SGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAK   88 (240)
Q Consensus        14 G~~~e~~~v~~~~~~~i----p~~~~~~~a-a~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~   88 (240)
                      ++|++|+.++.+.+.++    |++++++++ +++++.+.|||+++.+..++     ++|++|||+|++|++|++++|+|+
T Consensus        86 ~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~~~~-----~~g~~VLI~ga~g~vG~~aiqlAk  160 (325)
T TIGR02825        86 PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEICGV-----KGGETVMVNAAAGAVGSVVGQIAK  160 (325)
T ss_pred             cCceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHHHHHHHHhCC-----CCCCEEEEeCCccHHHHHHHHHHH
Confidence            47999999999988777    899999997 67889999999999888888     899999999999999999999999


Q ss_pred             hCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCC-c-cccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCc
Q 045248           89 LGNTHVTASCGA-RNIEFVKSLGADEVLDYKTP-D-GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus        89 ~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~-~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~  165 (240)
                      .+|++|++++++ ++.+.++++|++.++++.+. . ...+....++++|++||++|++.+..++++++++|+++.+|...
T Consensus       161 ~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G~~~~~~~~~~l~~~G~iv~~G~~~  240 (325)
T TIGR02825       161 LKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAIS  240 (325)
T ss_pred             HcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCCHHHHHHHHHHhCcCcEEEEecchh
Confidence            999999988864 78999999999999988764 2 22333344568999999999888889999999999999998542


Q ss_pred             h------HHHHHHHhhheeccceeeeEEEcC-----CHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcc
Q 045248          166 S------AMLTFALKKLTFSKKQLVPLLLIP-----KRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATG  234 (240)
Q Consensus       166 ~------~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~g  234 (240)
                      .      .........+.+++.++.++....     ..+.++++++++++|++++.+...|+++++++|++.+.+++..|
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~g  320 (325)
T TIGR02825       241 TYNRTGPLPPGPPPEIVIYQELRMEGFIVNRWQGEVRQKALKELLKWVLEGKIQYKEYVIEGFENMPAAFMGMLKGENLG  320 (325)
T ss_pred             hcccCCCCCCCcchHHHhhhcceEeEEEehhhhhhhhHHHHHHHHHHHHCCCcccceeccccHHHHHHHHHHHhcCCCCC
Confidence            1      111112334566777777765311     24578899999999999987767899999999999999999899


Q ss_pred             cEEEe
Q 045248          235 KIIVE  239 (240)
Q Consensus       235 kvvl~  239 (240)
                      |+|++
T Consensus       321 kvVv~  325 (325)
T TIGR02825       321 KTIVK  325 (325)
T ss_pred             eEEeC
Confidence            99974

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PLN02827 Alcohol dehydrogenase-like

Probab=99.98  E-value=2e-31  Score=221.09  Aligned_cols=219  Identities=15%  Similarity=0.145  Sum_probs=180.2

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      +|+|+||+.+++..++++|+++++++++++++++.++|+++.+..++     ++|++|||+| +|++|++++|+|+.+|+
T Consensus       145 ~G~~aeyv~v~~~~~~~iP~~l~~~~aa~l~~~~~~a~~~~~~~~~~-----~~g~~VlV~G-~G~vG~~~iqlak~~G~  218 (378)
T PLN02827        145 VSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAWNVADV-----SKGSSVVIFG-LGTVGLSVAQGAKLRGA  218 (378)
T ss_pred             cccceeeEEechhheEECCCCCCHHHhhhhcchhHhhHHHHHhhcCC-----CCCCEEEEEC-CCHHHHHHHHHHHHcCC
Confidence            48999999999999999999999999999988888999877666777     8999999999 79999999999999999


Q ss_pred             -EEEEEeC-cccHHHHHhcCCCEEEeCCCC--c-cccc-cCCCCCcccEEEeCCCCC-CccccccCCCCC-cEEEEeCCC
Q 045248           93 -HVTASCG-ARNIEFVKSLGADEVLDYKTP--D-GAAL-KSPSGRKYDAVIHCATGI-PWSTFEPNLGTN-GKVIDITPG  164 (240)
Q Consensus        93 -~v~~~~~-~~~~~~~~~~g~~~v~~~~~~--~-~~~~-~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~-G~iv~~g~~  164 (240)
                       +|+++++ +++.+.++++|++.++++.+.  + ...+ +.+.+ ++|++||++|.. .+..+++.++++ |+++.+|..
T Consensus       219 ~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~-g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~  297 (378)
T PLN02827        219 SQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGG-GADYSFECVGDTGIATTALQSCSDGWGLTVTLGVP  297 (378)
T ss_pred             CeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCC-CCCEEEECCCChHHHHHHHHhhccCCCEEEEECCc
Confidence             5777774 588999999999999987652  2 2222 33343 899999999985 588999999998 999999975


Q ss_pred             chHHHHHHH-hhheeccceeeeEEEc--CCHHHHHHHHHHHHCCceEE--ecCceecchhHHHHHHHHHcCCCcccEEEe
Q 045248          165 PSAMLTFAL-KKLTFSKKQLVPLLLI--PKRENLDFLVKLVKEGKLKT--VINSKHPLSKAEDAWAESIDGHATGKIIVE  239 (240)
Q Consensus       165 ~~~~~~~~~-~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~  239 (240)
                      ... ..+.. ..+.+++.++.+++..  ....+++++++++++|++++  +++++|+|+++++||+.+.+++. +|+||+
T Consensus       298 ~~~-~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~le~~~~A~~~~~~~~~-~k~vi~  375 (378)
T PLN02827        298 KAK-PEVSAHYGLFLSGRTLKGSLFGGWKPKSDLPSLVDKYMNKEIMIDEFITHNLSFDEINKAFELMREGKC-LRCVIH  375 (378)
T ss_pred             CCC-ccccccHHHHhcCceEEeeecCCCchhhhHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHCCCc-eEEEEE
Confidence            432 22222 2456788899887642  23567899999999999987  88999999999999999998876 588886


Q ss_pred             C
Q 045248          240 P  240 (240)
Q Consensus       240 ~  240 (240)
                      +
T Consensus       376 ~  376 (378)
T PLN02827        376 M  376 (378)
T ss_pred             e
Confidence            4

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.98  E-value=6.2e-32  Score=207.48  Aligned_cols=231  Identities=16%  Similarity=0.138  Sum_probs=193.4

Q ss_pred             cccceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHH
Q 045248            2 CNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGH   81 (240)
Q Consensus         2 c~~~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~   81 (240)
                      |.+..++.+....+|+||.++++..+.+|+++.+++.++.+.+...|+|.+.-+.+.+     ++|+++.|+| .|++|+
T Consensus       133 ~~gk~iyHfmg~StFsEYTVv~~~~v~kId~~aPl~kvcLLgCGvsTG~GAa~~~Akv-----~~GstvAVfG-LG~VGL  206 (375)
T KOG0022|consen  133 CKGKPIYHFMGTSTFSEYTVVDDISVAKIDPSAPLEKVCLLGCGVSTGYGAAWNTAKV-----EPGSTVAVFG-LGGVGL  206 (375)
T ss_pred             eCCCceEEecccccceeEEEeecceeEecCCCCChhheeEeeccccccchhhhhhccc-----CCCCEEEEEe-cchHHH
Confidence            3344444444456999999999999999999999999999999999999999899999     9999999999 999999


Q ss_pred             HHHHHHHhCCC-EEEEEe-CcccHHHHHhcCCCEEEeCCCCcc---ccccCCCCCcccEEEeCCCCC-CccccccCCCCC
Q 045248           82 YAVQLAKLGNT-HVTASC-GARNIEFVKSLGADEVLDYKTPDG---AALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTN  155 (240)
Q Consensus        82 ~~~~~a~~~g~-~v~~~~-~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~  155 (240)
                      ++++-|++.|+ ++|+++ ++++.+.++++|+++.+|+.+...   ..+.+..+.|+|+-|||+|+. .+++++.+.+.+
T Consensus       207 av~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~G  286 (375)
T KOG0022|consen  207 AVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDLKKPIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKG  286 (375)
T ss_pred             HHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhccccHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcC
Confidence            99999999999 999999 569999999999999999874332   223445558999999999984 499999999999


Q ss_pred             -cEEEEeCCCchHHHHHHHhhheeccceeeeEEE--cCCHHHHHHHHHHHHCCceE--EecCceecchhHHHHHHHHHcC
Q 045248          156 -GKVIDITPGPSAMLTFALKKLTFSKKQLVPLLL--IPKRENLDFLVKLVKEGKLK--TVINSKHPLSKAEDAWAESIDG  230 (240)
Q Consensus       156 -G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~a~~~~~~~  230 (240)
                       |+-+.+|...........+...+.++++.|+.+  ...+++++.+++...+++++  ..|||.+||++|++||+++.+|
T Consensus       287 wG~sv~iGv~~~~~~i~~~p~~l~~GR~~~Gs~FGG~K~~~~iP~lV~~y~~~~l~ld~~ITh~l~f~~In~AF~ll~~G  366 (375)
T KOG0022|consen  287 WGKSVVIGVAAAGQEISTRPFQLVTGRTWKGSAFGGFKSKSDIPKLVKDYMKKKLNLDEFITHELPFEEINKAFDLLHEG  366 (375)
T ss_pred             CCeEEEEEecCCCcccccchhhhccccEEEEEecccccchhhhhHHHHHHHhCccchhhhhhcccCHHHHHHHHHHHhCC
Confidence             999999965443322223333456778888877  35788999999999999865  7999999999999999999999


Q ss_pred             CCcccEEEe
Q 045248          231 HATGKIIVE  239 (240)
Q Consensus       231 ~~~gkvvl~  239 (240)
                      +.. |-|+.
T Consensus       367 ksi-R~vl~  374 (375)
T KOG0022|consen  367 KSI-RCVLW  374 (375)
T ss_pred             ceE-EEEEe
Confidence            976 66664

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=99.97  E-value=6.2e-31  Score=214.35  Aligned_cols=218  Identities=24%  Similarity=0.238  Sum_probs=176.4

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEE-cCCchHHHHHHHHHHhCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT-AASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~-G~~g~vG~~~~~~a~~~g   91 (240)
                      +|+|+||++++++.++++|+++++++++++++.+.|||.++ .....      ++++++|+ |++|++|++++|+|+.+|
T Consensus        96 ~g~~a~~~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~-~~~~~------~~~~vlv~~~g~g~vG~~a~q~a~~~G  168 (324)
T cd08291          96 YGTYAEYAVADAQQCLPLPDGVSFEQGASSFVNPLTALGML-ETARE------EGAKAVVHTAAASALGRMLVRLCKADG  168 (324)
T ss_pred             CCcchheeeecHHHeEECCCCCCHHHHhhhcccHHHHHHHH-Hhhcc------CCCcEEEEccCccHHHHHHHHHHHHcC
Confidence            39999999999999999999999999998888888998655 55544      45556665 779999999999999999


Q ss_pred             CEEEEEeCc-ccHHHHHhcCCCEEEeCCCCcc-c-cccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchHH
Q 045248           92 THVTASCGA-RNIEFVKSLGADEVLDYKTPDG-A-ALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAM  168 (240)
Q Consensus        92 ~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~-~-~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~  168 (240)
                      ++|++++++ ++.+.++++|+++++++...+. . ..+.+.+.++|++||++|+......+++++++|+++.+|......
T Consensus       169 ~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~  248 (324)
T cd08291         169 IKVINIVRRKEQVDLLKKIGAEYVLNSSDPDFLEDLKELIAKLNATIFFDAVGGGLTGQILLAMPYGSTLYVYGYLSGKL  248 (324)
T ss_pred             CEEEEEeCCHHHHHHHHHcCCcEEEECCCccHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHhhCCCCEEEEEEecCCCC
Confidence            999988864 7899999999999998776552 2 234455678999999999887788899999999999998543221


Q ss_pred             H-HHHHhhheeccceeeeEEEc-----CCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEE
Q 045248          169 L-TFALKKLTFSKKQLVPLLLI-----PKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIV  238 (240)
Q Consensus       169 ~-~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl  238 (240)
                      . .++...+..++.++.+++..     ...+.+++++++++ +.+++.++++|+|+|+++||+.+.++...||+++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~l~~~~~a~~~~~~~~~~Gkvv~  323 (324)
T cd08291         249 DEPIDPVDLIFKNKSIEGFWLTTWLQKLGPEVVKKLKKLVK-TELKTTFASRYPLALTLEAIAFYSKNMSTGKKLL  323 (324)
T ss_pred             cccCCHHHHhhcCcEEEEEEHHHhhcccCHHHHHHHHHHHh-CccccceeeEEcHHHHHHHHHHHHhCCCCCeEEe
Confidence            1 12233445677777776542     13567889999998 9999999999999999999999999988999987

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=99.97  E-value=8.8e-31  Score=215.88  Aligned_cols=217  Identities=21%  Similarity=0.267  Sum_probs=179.2

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g   91 (240)
                      .+|+|+||+++++..++++|+++++++++++++.+.|||+++......     ++|++++|+| +|++|++++|+|+.+|
T Consensus       131 ~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~-----~~g~~vlV~G-~G~vG~~av~~Ak~~G  204 (357)
T PLN02514        131 TQGGFASAMVVDQKFVVKIPEGMAPEQAAPLLCAGVTVYSPLSHFGLK-----QSGLRGGILG-LGGVGHMGVKIAKAMG  204 (357)
T ss_pred             CCCccccEEEEchHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHcccC-----CCCCeEEEEc-ccHHHHHHHHHHHHCC
Confidence            479999999999999999999999999999999999999999665555     6899999997 7999999999999999


Q ss_pred             CEEEEEeCc-ccHH-HHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEeCCCchHH
Q 045248           92 THVTASCGA-RNIE-FVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITPGPSAM  168 (240)
Q Consensus        92 ~~v~~~~~~-~~~~-~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~~~~~~  168 (240)
                      ++|+++++. ++++ .++++|++.++++.+.. ...+.+  .++|++||++|. ..+..++++++++|+++.+|.... .
T Consensus       205 ~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~-~~~~~~--~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~-~  280 (357)
T PLN02514        205 HHVTVISSSDKKREEALEHLGADDYLVSSDAA-EMQEAA--DSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINT-P  280 (357)
T ss_pred             CeEEEEeCCHHHHHHHHHhcCCcEEecCCChH-HHHHhc--CCCcEEEECCCchHHHHHHHHHhccCCEEEEECCCCC-C
Confidence            998888754 4544 44679998877654421 112222  369999999996 468899999999999999996532 2


Q ss_pred             HHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          169 LTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       169 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      ..+....+.+++.++.+++. ....+++++++++++|++++.+ ++|+++|+.+||+.+.+++..||+|+.+
T Consensus       281 ~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~~~~~g~l~~~i-~~~~l~~~~~A~~~~~~~~~~gk~v~~~  350 (357)
T PLN02514        281 LQFVTPMLMLGRKVITGSFI-GSMKETEEMLEFCKEKGLTSMI-EVVKMDYVNTAFERLEKNDVRYRFVVDV  350 (357)
T ss_pred             CcccHHHHhhCCcEEEEEec-CCHHHHHHHHHHHHhCCCcCcE-EEEcHHHHHHHHHHHHcCCCceeEEEEc
Confidence            33445566678889999874 5677899999999999998776 5899999999999999999889999864

>PLN02740 Alcohol dehydrogenase-like

Probab=99.97  E-value=6.6e-31  Score=218.44  Aligned_cols=219  Identities=17%  Similarity=0.202  Sum_probs=178.2

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      +|+|+||++++++.++++|+++++++++++++.+.|||+++.+..++     ++|++|||+| +|++|++++|+|+.+|+
T Consensus       150 ~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~-----~~g~~VlV~G-~G~vG~~a~q~ak~~G~  223 (381)
T PLN02740        150 TSTFTEYTVLDSACVVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANV-----QAGSSVAIFG-LGAVGLAVAEGARARGA  223 (381)
T ss_pred             CccceeEEEEehHHeEECCCCCCHHHhhhhcccchhhHHHHHhccCC-----CCCCEEEEEC-CCHHHHHHHHHHHHCCC
Confidence            69999999999999999999999999999999899999988777888     8999999999 79999999999999999


Q ss_pred             -EEEEEeC-cccHHHHHhcCCCEEEeCCCCc---cccc-cCCCCCcccEEEeCCCCC-CccccccCCCCC-cEEEEeCCC
Q 045248           93 -HVTASCG-ARNIEFVKSLGADEVLDYKTPD---GAAL-KSPSGRKYDAVIHCATGI-PWSTFEPNLGTN-GKVIDITPG  164 (240)
Q Consensus        93 -~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~---~~~~-~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~-G~iv~~g~~  164 (240)
                       +|+++++ +++++.++++|++.++++.+.+   ...+ +.+.+ ++|++||++|+. .+..++++++++ |+++.+|..
T Consensus       224 ~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~-g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~  302 (381)
T PLN02740        224 SKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGG-GVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIH  302 (381)
T ss_pred             CcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCC-CCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccC
Confidence             6998886 4899999999999999876532   1222 33344 899999999974 588999999997 999999965


Q ss_pred             chH-HHHHHHhhheeccceeeeEEEc--CCHHHHHHHHHHHHCCceE--EecCceecchhHHHHHHHHHcCCCcccEEEe
Q 045248          165 PSA-MLTFALKKLTFSKKQLVPLLLI--PKRENLDFLVKLVKEGKLK--TVINSKHPLSKAEDAWAESIDGHATGKIIVE  239 (240)
Q Consensus       165 ~~~-~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~  239 (240)
                      ... ...+.... .+++.++.+++..  .....++++++++.+++++  ++++++|+|+|+++||+.+.+++. .|++|+
T Consensus       303 ~~~~~~~~~~~~-~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~e~~~A~~~~~~~~~-~k~~~~  380 (381)
T PLN02740        303 PTPKMLPLHPME-LFDGRSITGSVFGDFKGKSQLPNLAKQCMQGVVNLDGFITHELPFEKINEAFQLLEDGKA-LRCLLH  380 (381)
T ss_pred             CCCceecccHHH-HhcCCeEEEEecCCCCcHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHHCCCc-eeEEEe
Confidence            432 11222111 2357788887642  2246789999999999876  478899999999999999988875 499886


Q ss_pred             C
Q 045248          240 P  240 (240)
Q Consensus       240 ~  240 (240)
                      +
T Consensus       381 ~  381 (381)
T PLN02740        381 L  381 (381)
T ss_pred             C
Confidence            4

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=99.97  E-value=9.3e-31  Score=216.59  Aligned_cols=219  Identities=17%  Similarity=0.197  Sum_probs=175.2

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      .|+|+||+++++..++++|+++++++++++++++.|||+++.+..++     ++|++|||+| +|++|++++|+|+.+|+
T Consensus       137 ~G~~aey~~v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~a~~~~~~~-----~~g~~VlV~G-~G~iG~~a~q~Ak~~G~  210 (368)
T TIGR02818       137 CSTFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTAKV-----EEGDTVAVFG-LGGIGLSVIQGARMAKA  210 (368)
T ss_pred             CccceeeEEechhheEECCCCCCHHHhhhhcchhHHHHHHHHHhcCC-----CCCCEEEEEC-CCHHHHHHHHHHHHcCC
Confidence            47999999999999999999999999999999999999998777888     8999999998 79999999999999999


Q ss_pred             -EEEEEeC-cccHHHHHhcCCCEEEeCCCCc---cccc-cCCCCCcccEEEeCCCCC-CccccccCCCCC-cEEEEeCCC
Q 045248           93 -HVTASCG-ARNIEFVKSLGADEVLDYKTPD---GAAL-KSPSGRKYDAVIHCATGI-PWSTFEPNLGTN-GKVIDITPG  164 (240)
Q Consensus        93 -~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~---~~~~-~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~-G~iv~~g~~  164 (240)
                       +|+++++ +++++.++++|++.++++.+.+   ...+ +.+.+ ++|++||++|++ .+..++++++++ |+++.+|..
T Consensus       211 ~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~-g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~  289 (368)
T TIGR02818       211 SRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDG-GVDYSFECIGNVNVMRAALECCHKGWGESIIIGVA  289 (368)
T ss_pred             CeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCC-CCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEecc
Confidence             8999885 5899999999999999876422   1222 33343 899999999974 488899999886 999999964


Q ss_pred             ch-HHHHHHHhhheeccceeeeEEEc--CCHHHHHHHHHHHHCCceE--EecCceecchhHHHHHHHHHcCCCcccEEEe
Q 045248          165 PS-AMLTFALKKLTFSKKQLVPLLLI--PKRENLDFLVKLVKEGKLK--TVINSKHPLSKAEDAWAESIDGHATGKIIVE  239 (240)
Q Consensus       165 ~~-~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~  239 (240)
                      .. .........+. .+..+.+++..  ..+..++++++++++++++  ++++++|+|+|+++||+.+.+++. .|++++
T Consensus       290 ~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~-~k~~v~  367 (368)
T TIGR02818       290 GAGQEISTRPFQLV-TGRVWRGSAFGGVKGRTELPGIVEQYMKGEIALDDFVTHTMPLEDINEAFDLMHEGKS-IRTVIH  367 (368)
T ss_pred             CCCCcccccHHHHh-ccceEEEeeccCCCcHHHHHHHHHHHHCCCCCchhheeEEecHHHHHHHHHHHhCCCc-eeEEee
Confidence            31 12222222222 23345665432  2356799999999999875  578999999999999999988764 699886


Q ss_pred             C
Q 045248          240 P  240 (240)
Q Consensus       240 ~  240 (240)
                      +
T Consensus       368 ~  368 (368)
T TIGR02818       368 Y  368 (368)
T ss_pred             C
Confidence            4

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=99.97  E-value=1.3e-30  Score=212.78  Aligned_cols=222  Identities=24%  Similarity=0.307  Sum_probs=180.2

Q ss_pred             cccceEEEecCC---ceeeCCCCCC--h---hhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHH
Q 045248           14 GGLAEFAVAKES---STVARPSEVS--A---AEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQ   85 (240)
Q Consensus        14 G~~~e~~~v~~~---~~~~ip~~~~--~---~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~   85 (240)
                      ++|++|+.++++   .++++|++++  +   ..++++++.+.|||+++....++     ++|++|||+|++|++|++++|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~-----~~g~~vlI~ga~g~vG~~aiq  162 (329)
T cd08294          88 FGWRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKP-----KAGETVVVNGAAGAVGSLVGQ  162 (329)
T ss_pred             CCeeeEEEECCccccceEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCC-----CCCCEEEEecCccHHHHHHHH
Confidence            589999999999   9999999998  2   33346788899999999888888     899999999999999999999


Q ss_pred             HHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCc-cccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCC
Q 045248           86 LAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus        86 ~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~  163 (240)
                      +|+.+|++|++++++ ++.+.++++|+++++++.+.+ ...+....+.++|++||++|++.+..++++++++|+++.+|.
T Consensus       163 lA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~g~~~~~~~~~~l~~~G~iv~~g~  242 (329)
T cd08294         163 IAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNVGGEFSSTVLSHMNDFGRVAVCGS  242 (329)
T ss_pred             HHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEECCCHHHHHHHHHhhccCCEEEEEcc
Confidence            999999999998864 889999999999999987665 223333334789999999999778999999999999999884


Q ss_pred             CchH----H--HHHHHhhheeccceeeeEEEcC----CHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCc
Q 045248          164 GPSA----M--LTFALKKLTFSKKQLVPLLLIP----KRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHAT  233 (240)
Q Consensus       164 ~~~~----~--~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~  233 (240)
                      ....    .  .......+.+++.++.+++...    ..+.++++++++++|++++.+...++++++++|++.+.+++..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~A~~~~~~~~~~  322 (329)
T cd08294         243 ISTYNDKEPKKGPYVQETIIFKQLKMEGFIVYRWQDRWPEALKQLLKWIKEGKLKYREHVTEGFENMPQAFIGMLKGENT  322 (329)
T ss_pred             hhccCCCCCCcCcccHHHHhhhcceEEEEEhhhhHHHHHHHHHHHHHHHHCCCCcCCcccccCHHHHHHHHHHHHcCCCC
Confidence            3210    0  1122334566777887765321    1345778999999999987666779999999999999999989


Q ss_pred             ccEEEeC
Q 045248          234 GKIIVEP  240 (240)
Q Consensus       234 gkvvl~~  240 (240)
                      ||+|+++
T Consensus       323 gkvvv~~  329 (329)
T cd08294         323 GKAIVKV  329 (329)
T ss_pred             CeEEEeC
Confidence            9999874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=99.97  E-value=1.4e-30  Score=215.50  Aligned_cols=218  Identities=16%  Similarity=0.156  Sum_probs=176.5

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      .|+|+||+.++++.++++|+++++++++++++++.|||+++.+..++     ++|++|+|+| +|++|++++|+|+.+|+
T Consensus       136 ~g~~ae~~~v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~~~~~~~~~-----~~g~~vlV~G-~g~vG~~~~~~a~~~G~  209 (365)
T cd08277         136 TSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAWNTAKV-----EPGSTVAVFG-LGAVGLSAIMGAKIAGA  209 (365)
T ss_pred             cccceeeEEEchhheEECCCCCCHHHhhHhcchhHHHHHHHHhhcCC-----CCCCEEEEEC-CCHHHHHHHHHHHHcCC
Confidence            58999999999999999999999999999999999999998777778     8999999998 79999999999999999


Q ss_pred             -EEEEEeCc-ccHHHHHhcCCCEEEeCCCCc---cccc-cCCCCCcccEEEeCCCC-CCccccccCCCCC-cEEEEeCCC
Q 045248           93 -HVTASCGA-RNIEFVKSLGADEVLDYKTPD---GAAL-KSPSGRKYDAVIHCATG-IPWSTFEPNLGTN-GKVIDITPG  164 (240)
Q Consensus        93 -~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~---~~~~-~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~-G~iv~~g~~  164 (240)
                       +|+++++. ++++.++++|++++++..+.+   ...+ +.+. .++|++||++|+ ..+..++++++++ |+++.+|..
T Consensus       210 ~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  288 (365)
T cd08277         210 SRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTG-GGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVP  288 (365)
T ss_pred             CeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhC-CCCCEEEECCCChHHHHHHHHhcccCCCEEEEEcCC
Confidence             79988864 789999999999998866532   1222 2333 689999999996 4478899999885 999999865


Q ss_pred             chHHHHHHHhhheeccceeeeEEEc--CCHHHHHHHHHHHHCCceE--EecCceecchhHHHHHHHHHcCCCcccEEEe
Q 045248          165 PSAMLTFALKKLTFSKKQLVPLLLI--PKRENLDFLVKLVKEGKLK--TVINSKHPLSKAEDAWAESIDGHATGKIIVE  239 (240)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~  239 (240)
                      .....++....+.. +.++.+++..  .....++++++++++++++  ++++++|+++|+++||+.+.+++ ..|++++
T Consensus       289 ~~~~~~~~~~~~~~-~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~-~~k~~i~  365 (365)
T cd08277         289 PGAELSIRPFQLIL-GRTWKGSFFGGFKSRSDVPKLVSKYMNKKFDLDELITHVLPFEEINKGFDLMKSGE-CIRTVIT  365 (365)
T ss_pred             CccccccCHhHHhh-CCEEEeeecCCCChHHHHHHHHHHHHCCCcChhHheeeEEchhhHHHHHHHHHCCC-CceEeeC
Confidence            42222222323332 6778777642  2356789999999999755  67889999999999999998887 4688874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=99.97  E-value=2.6e-30  Score=214.02  Aligned_cols=218  Identities=19%  Similarity=0.197  Sum_probs=174.7

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      .|+|+||+.++++.++++|+++++++++++++.+.|+|+++.+..++     +++++|||+| +|++|++++|+|+.+|+
T Consensus       138 ~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a~~~~~~~-----~~g~~VlV~G-~G~vG~~a~~~ak~~G~  211 (368)
T cd08300         138 TSTFSEYTVVAEISVAKINPEAPLDKVCLLGCGVTTGYGAVLNTAKV-----EPGSTVAVFG-LGAVGLAVIQGAKAAGA  211 (368)
T ss_pred             cccceeEEEEchhceEeCCCCCChhhhhhhccchhhhHHHHHHhcCC-----CCCCEEEEEC-CCHHHHHHHHHHHHcCC
Confidence            47999999999999999999999999999998989999998777778     8999999998 79999999999999999


Q ss_pred             -EEEEEeCc-ccHHHHHhcCCCEEEeCCCCc---cccc-cCCCCCcccEEEeCCCCC-CccccccCCCCC-cEEEEeCCC
Q 045248           93 -HVTASCGA-RNIEFVKSLGADEVLDYKTPD---GAAL-KSPSGRKYDAVIHCATGI-PWSTFEPNLGTN-GKVIDITPG  164 (240)
Q Consensus        93 -~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~---~~~~-~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~-G~iv~~g~~  164 (240)
                       +|++++++ ++++.++++|++.++++.+.+   ...+ +.+. .++|++||++|+. .+..++++++++ |+++.+|..
T Consensus       212 ~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~-~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~  290 (368)
T cd08300         212 SRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTD-GGVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVA  290 (368)
T ss_pred             CeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhC-CCCcEEEECCCChHHHHHHHHhhccCCCeEEEEccC
Confidence             79998864 889999999999999876532   1222 3344 3899999999974 588899999887 999999865


Q ss_pred             ch-HHHHHHHhhheeccceeeeEEE--cCCHHHHHHHHHHHHCCceEE--ecCceecchhHHHHHHHHHcCCCcccEEEe
Q 045248          165 PS-AMLTFALKKLTFSKKQLVPLLL--IPKRENLDFLVKLVKEGKLKT--VINSKHPLSKAEDAWAESIDGHATGKIIVE  239 (240)
Q Consensus       165 ~~-~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~  239 (240)
                      .. .........+. ...++.++..  ....+++++++++++++++++  +++++|+|+|+++||+.+.+++. .|++++
T Consensus       291 ~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~i~~~~~le~~~~A~~~~~~~~~-~k~~~~  368 (368)
T cd08300         291 AAGQEISTRPFQLV-TGRVWKGTAFGGWKSRSQVPKLVEDYMKGKIKVDEFITHTMPLDEINEAFDLMHAGKS-IRTVVK  368 (368)
T ss_pred             CCCCccccCHHHHh-hcCeEEEEEecccCcHHHHHHHHHHHHcCCCChhhceeeeEcHHHHHHHHHHHhCCCC-ceeeeC
Confidence            32 11111121122 2335555443  235678999999999999874  68899999999999999988774 588874

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=99.97  E-value=2.7e-30  Score=212.76  Aligned_cols=217  Identities=25%  Similarity=0.347  Sum_probs=181.6

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      +|+|+||+.++++.++++|+++++++++++ ..+.|||+++ ...++     +++++|+|+| +|++|++++|+|+.+|+
T Consensus       126 ~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~ta~~~l-~~~~~-----~~g~~vlI~g-~g~vG~~a~q~a~~~G~  197 (351)
T cd08233         126 GGGFAEYVVVPAYHVHKLPDNVPLEEAALV-EPLAVAWHAV-RRSGF-----KPGDTALVLG-AGPIGLLTILALKAAGA  197 (351)
T ss_pred             CCceeeEEEechHHeEECcCCCCHHHhhhc-cHHHHHHHHH-HhcCC-----CCCCEEEEEC-CCHHHHHHHHHHHHcCC
Confidence            699999999999999999999999998776 5667999999 77777     8999999998 69999999999999999


Q ss_pred             -EEEEEeC-cccHHHHHhcCCCEEEeCCCCcc-c-cccCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEeCCCchH
Q 045248           93 -HVTASCG-ARNIEFVKSLGADEVLDYKTPDG-A-ALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITPGPSA  167 (240)
Q Consensus        93 -~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~-~-~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~~~~~  167 (240)
                       +|+++++ +++.+.++++|++.++++.+.+. . ..+.+.+.++|++||++|+ ..+..++++++++|+++.+|... .
T Consensus       198 ~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~  276 (351)
T cd08233         198 SKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPRGTAVNVAIWE-K  276 (351)
T ss_pred             CEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCCCEEEEEccCC-C
Confidence             8888885 47888889999999998776552 2 2344556679999999986 45888999999999999999754 2


Q ss_pred             HHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceE--EecCceecchhH-HHHHHHHHcCCCc-ccEEEe
Q 045248          168 MLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLK--TVINSKHPLSKA-EDAWAESIDGHAT-GKIIVE  239 (240)
Q Consensus       168 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~-~~a~~~~~~~~~~-gkvvl~  239 (240)
                      ..+++...+..++.++.+.+. ...+.++++++++++++++  +.++++|+++|+ ++||+.+.+++.. +|+|+.
T Consensus       277 ~~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~~~~~g~l~~~~~i~~~~~l~e~~~~a~~~~~~~~~~~~k~v~~  351 (351)
T cd08233         277 PISFNPNDLVLKEKTLTGSIC-YTREDFEEVIDLLASGKIDAEPLITSRIPLEDIVEKGFEELINDKEQHVKILVS  351 (351)
T ss_pred             CCccCHHHHHhhCcEEEEEec-cCcchHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHHhCCCCceEEEeC
Confidence            334455566678888988764 4567899999999999995  567889999996 7899999998874 899873

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=99.97  E-value=2.5e-30  Score=211.96  Aligned_cols=220  Identities=14%  Similarity=0.151  Sum_probs=167.8

Q ss_pred             cccceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhh--hCCCcCCCCCCCeEEEEcCCchH
Q 045248            2 CNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQS--AGVKLDGSGQQKNILVTAASGGV   79 (240)
Q Consensus         2 c~~~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~--~~~~~~~~~~g~~vlV~G~~g~v   79 (240)
                      |.+..+.+...+|+|+||+++++++++++|+++++++++++. .+.++|+++...  ..+     ++|++|+|.| +|++
T Consensus       103 c~~~~~~g~~~~G~~aey~~v~~~~~~~vP~~l~~~~aa~~~-~~~~a~~a~~~~~~~~~-----~~g~~VlV~G-~G~v  175 (341)
T cd08237         103 LPSSRFRSSGYDGFMQDYVFLPPDRLVKLPDNVDPEVAAFTE-LVSVGVHAISRFEQIAH-----KDRNVIGVWG-DGNL  175 (341)
T ss_pred             CCCcceeEecCCCceEEEEEEchHHeEECCCCCChHHhhhhc-hHHHHHHHHHHHhhcCC-----CCCCEEEEEC-CCHH
Confidence            333333444457999999999999999999999999877554 566889988543  344     7899999999 7999


Q ss_pred             HHHHHHHHHh-CCC-EEEEEeC-cccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC----CccccccCC
Q 045248           80 GHYAVQLAKL-GNT-HVTASCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI----PWSTFEPNL  152 (240)
Q Consensus        80 G~~~~~~a~~-~g~-~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~----~~~~~~~~l  152 (240)
                      |++++|+++. +|. +|+++++ ++|++.+++++++..++.         .....++|+|||++|+.    .+..+++++
T Consensus       176 Gl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~---------~~~~~g~d~viD~~G~~~~~~~~~~~~~~l  246 (341)
T cd08237         176 GYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDD---------IPEDLAVDHAFECVGGRGSQSAINQIIDYI  246 (341)
T ss_pred             HHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhh---------hhhccCCcEEEECCCCCccHHHHHHHHHhC
Confidence            9999999996 665 8988886 478888888776533321         01123699999999953    388899999


Q ss_pred             CCCcEEEEeCCCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCC-----ceEEecCceecc---hhHHHHH
Q 045248          153 GTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEG-----KLKTVINSKHPL---SKAEDAW  224 (240)
Q Consensus       153 ~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~---~~~~~a~  224 (240)
                      +++|+++.+|.... ..+++...+..+++++.++.. ...+++++++++++++     +++++++++|++   +++++++
T Consensus       247 ~~~G~iv~~G~~~~-~~~~~~~~~~~k~~~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~l~~l~~~~~a~  324 (341)
T cd08237         247 RPQGTIGLMGVSEY-PVPINTRMVLEKGLTLVGSSR-STREDFERAVELLSRNPEVAEYLRKLVGGVFPVRSINDIHRAF  324 (341)
T ss_pred             cCCcEEEEEeecCC-CcccCHHHHhhCceEEEEecc-cCHHHHHHHHHHHHhCCcccCChHHHhccccccccHHHHHHHH
Confidence            99999999996432 233445556788889998764 4567899999999999     567789999998   4667777


Q ss_pred             HHHHcCCCcccEEEeC
Q 045248          225 AESIDGHATGKIIVEP  240 (240)
Q Consensus       225 ~~~~~~~~~gkvvl~~  240 (240)
                      +...++ ..||+|+++
T Consensus       325 ~~~~~~-~~gKvvi~~  339 (341)
T cd08237         325 ESDLTN-SWGKTVMEW  339 (341)
T ss_pred             HHHhhc-CcceEEEEe
Confidence            666655 678999864

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=99.97  E-value=9.4e-31  Score=208.95  Aligned_cols=201  Identities=17%  Similarity=0.187  Sum_probs=164.1

Q ss_pred             CCcccceEEEecCC-ceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhC
Q 045248           12 NGGGLAEFAVAKES-STVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLG   90 (240)
Q Consensus        12 ~~G~~~e~~~v~~~-~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~   90 (240)
                      .+|+|+||++++++ .++++|+++++++++++++.+.|+|+++ .....     .++++|||+| +|++|++++|+|+.+
T Consensus        71 ~~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al-~~~~~-----~~g~~VlV~G-~G~vG~~~~~~ak~~  143 (280)
T TIGR03366        71 LSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAAL-EAAGD-----LKGRRVLVVG-AGMLGLTAAAAAAAA  143 (280)
T ss_pred             ccccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHH-HhccC-----CCCCEEEEEC-CCHHHHHHHHHHHHc
Confidence            47999999999997 7999999999999999999999999998 44555     6899999998 699999999999999


Q ss_pred             CCE-EEEEeC-cccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC-CccccccCCCCCcEEEEeCCCc-h
Q 045248           91 NTH-VTASCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTNGKVIDITPGP-S  166 (240)
Q Consensus        91 g~~-v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~g~~~-~  166 (240)
                      |++ |+++++ ++|++.++++|++.+++..+......+.+.+.++|++||++|.+ .+..++++++++|+++.+|... .
T Consensus       144 G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~  223 (280)
T TIGR03366       144 GAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPG  223 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCC
Confidence            995 888875 47899999999999887654322223344567899999999975 4889999999999999999642 2


Q ss_pred             HHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCC--ceE--EecCceecchhH
Q 045248          167 AMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEG--KLK--TVINSKHPLSKA  220 (240)
Q Consensus       167 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~i~--~~~~~~~~~~~~  220 (240)
                      ...+++...+..+++++.+++. ...++++++++++.++  ++.  ++++++|+++|+
T Consensus       224 ~~~~i~~~~~~~~~~~i~g~~~-~~~~~~~~~~~~l~~~~~~~~~~~~it~~~~l~~~  280 (280)
T TIGR03366       224 GPVALDPEQVVRRWLTIRGVHN-YEPRHLDQAVRFLAANGQRFPFEELVGKPFPLADV  280 (280)
T ss_pred             CceeeCHHHHHhCCcEEEecCC-CCHHHHHHHHHHHHhhCCCCCHHHHhhcccccccC
Confidence            2334556677788999999763 5678899999999985  333  578999999874

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=99.97  E-value=5.4e-30  Score=213.98  Aligned_cols=222  Identities=23%  Similarity=0.306  Sum_probs=183.3

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhh--hCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHh
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQS--AGVKLDGSGQQKNILVTAASGGVGHYAVQLAKL   89 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~--~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~   89 (240)
                      .+|+|++|+.+++..++++|+++++++++.++..+.|||+++...  .++     +++++|+|+|++|++|++++++|+.
T Consensus       142 ~~g~~a~y~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~al~~~~~~~~-----~~g~~vlV~ga~g~iG~a~~~lak~  216 (393)
T cd08246         142 NYGSFAQFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTV-----KPGDNVLIWGASGGLGSMAIQLARA  216 (393)
T ss_pred             CCCcceeEEEechHHeEECCCCCCHHHHhhhcccHHHHHHHHhhcccccC-----CCCCEEEEECCCcHHHHHHHHHHHH
Confidence            469999999999999999999999999999999999999998544  566     7899999999889999999999999


Q ss_pred             CCCEEEEEeC-cccHHHHHhcCCCEEEeCCCCc-----------------------cc-cccCCCCC-cccEEEeCCCCC
Q 045248           90 GNTHVTASCG-ARNIEFVKSLGADEVLDYKTPD-----------------------GA-ALKSPSGR-KYDAVIHCATGI  143 (240)
Q Consensus        90 ~g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~-----------------------~~-~~~~~~~~-~~d~v~d~~g~~  143 (240)
                      +|++++++++ +++.+.++++|++.++++++.+                       .. ..+.+.+. ++|+++|++|+.
T Consensus       217 ~G~~vv~~~~s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~~  296 (393)
T cd08246         217 AGANPVAVVSSEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEARRFGKAIWDILGGREDPDIVFEHPGRA  296 (393)
T ss_pred             cCCeEEEEeCCHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhccchHHHHHHHHhCCCCCCeEEEECCchH
Confidence            9998888776 4889999999999999864421                       01 12334555 899999999987


Q ss_pred             CccccccCCCCCcEEEEeCCCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHH
Q 045248          144 PWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDA  223 (240)
Q Consensus       144 ~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a  223 (240)
                      .+..++++++++|+++.+|.............+..++.++.+.+. ...+.+.+++++++++.+.+.++++|+++++++|
T Consensus       297 ~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~l~~~~~~i~g~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~a  375 (393)
T cd08246         297 TFPTSVFVCDRGGMVVICAGTTGYNHTYDNRYLWMRQKRIQGSHF-ANDREAAEANRLVMKGRIDPCLSKVFSLDETPDA  375 (393)
T ss_pred             hHHHHHHHhccCCEEEEEcccCCCCCCCcHHHHhhheeEEEeccc-CcHHHHHHHHHHHHcCCceeeeeEEEeHHHHHHH
Confidence            788999999999999999854322222334445567777777653 4667899999999999998878889999999999


Q ss_pred             HHHHHcC-CCcccEEEe
Q 045248          224 WAESIDG-HATGKIIVE  239 (240)
Q Consensus       224 ~~~~~~~-~~~gkvvl~  239 (240)
                      ++.+.++ ...||+|+-
T Consensus       376 ~~~~~~~~~~~gkvvv~  392 (393)
T cd08246         376 HQLMHRNQHHVGNMAVL  392 (393)
T ss_pred             HHHHHhCccccceEEEe
Confidence            9999988 788999874

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=99.97  E-value=2.7e-30  Score=211.54  Aligned_cols=222  Identities=24%  Similarity=0.318  Sum_probs=175.6

Q ss_pred             CCcccceEEEecCCceeeC-CCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhC
Q 045248           12 NGGGLAEFAVAKESSTVAR-PSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLG   90 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~i-p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~   90 (240)
                      .+|+|+||+.+|.++++++ |+++ ..+.+++...+.+++++.......     .++.+|+|+| +|++|++++++++.+
T Consensus       119 ~~G~~aEyv~vp~~~~~~~~pd~~-~~~~aal~epla~~~~~~a~~~~~-----~~~~~V~V~G-aGpIGLla~~~a~~~  191 (350)
T COG1063         119 IDGGFAEYVRVPADFNLAKLPDGI-DEEAAALTEPLATAYHGHAERAAV-----RPGGTVVVVG-AGPIGLLAIALAKLL  191 (350)
T ss_pred             CCCceEEEEEeccccCeecCCCCC-ChhhhhhcChhhhhhhhhhhccCC-----CCCCEEEEEC-CCHHHHHHHHHHHHc
Confidence            5799999999998666665 7888 566666655667997775455544     4556999999 999999999999999


Q ss_pred             CC-EEEEEeC-cccHHHHHh-cCCCEEEeCCCCc--cccccCCCCCcccEEEeCCCCCC-ccccccCCCCCcEEEEeCCC
Q 045248           91 NT-HVTASCG-ARNIEFVKS-LGADEVLDYKTPD--GAALKSPSGRKYDAVIHCATGIP-WSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus        91 g~-~v~~~~~-~~~~~~~~~-~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~g~~  164 (240)
                      |+ +|++++. ++|++.+++ .|++.+++....+  ....+.+.+.++|++|||+|... +.++++.++++|+++.+|..
T Consensus       192 Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~  271 (350)
T COG1063         192 GASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVY  271 (350)
T ss_pred             CCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEecc
Confidence            98 8888875 589999998 6666665544433  23346677789999999999754 88999999999999999976


Q ss_pred             chHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEE--ecCceecchhHHHHHHHHHcCCC-cccEEEeC
Q 045248          165 PSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKT--VINSKHPLSKAEDAWAESIDGHA-TGKIIVEP  240 (240)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~a~~~~~~~~~-~gkvvl~~  240 (240)
                      ......++...+..+++++.+++.......++.+++++++|++.+  ++++.++++++++||+.+.+++. .-|+++.+
T Consensus       272 ~~~~~~~~~~~~~~kel~l~gs~~~~~~~~~~~~~~ll~~g~i~~~~lit~~~~~~~~~~a~~~~~~~~~~~~Kv~i~~  350 (350)
T COG1063         272 GGEDIPLPAGLVVSKELTLRGSLRPSGREDFERALDLLASGKIDPEKLITHRLPLDDAAEAYELFADRKEEAIKVVLKP  350 (350)
T ss_pred             CCccCccCHHHHHhcccEEEeccCCCCcccHHHHHHHHHcCCCChhHceEeeccHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            543224556678889999999854356678999999999999874  66889999999999999998654 45888864

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=8.4e-30  Score=209.74  Aligned_cols=222  Identities=32%  Similarity=0.432  Sum_probs=185.7

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g   91 (240)
                      .+|+|++|+.+++..++++|+++++.+++++++.+.|||+++ ...++     .+++++||+|++|++|++++++|+.+|
T Consensus       129 ~~g~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~-~~~~~-----~~g~~vlI~g~~g~ig~~~~~~a~~~g  202 (350)
T cd08274         129 RDGGFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENML-ERAGV-----GAGETVLVTGASGGVGSALVQLAKRRG  202 (350)
T ss_pred             CCccceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHHHH-hhcCC-----CCCCEEEEEcCCcHHHHHHHHHHHhcC
Confidence            369999999999999999999999999999999999999998 77777     899999999988999999999999999


Q ss_pred             CEEEEEeCcccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchHHHHH
Q 045248           92 THVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTF  171 (240)
Q Consensus        92 ~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~  171 (240)
                      +++++++++++.+.++++|++.+++...........+.+.++|++||++|+..+..++++++++|+++.+|........+
T Consensus       203 ~~vi~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~  282 (350)
T cd08274         203 AIVIAVAGAAKEEAVRALGADTVILRDAPLLADAKALGGEPVDVVADVVGGPLFPDLLRLLRPGGRYVTAGAIAGPVVEL  282 (350)
T ss_pred             CEEEEEeCchhhHHHHhcCCeEEEeCCCccHHHHHhhCCCCCcEEEecCCHHHHHHHHHHhccCCEEEEecccCCccccC
Confidence            99998887668888899998766554333322244456678999999999877889999999999999998543221223


Q ss_pred             HHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          172 ALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       172 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      +...+..++.++.++.. ...+.+.++++++.++++++.+++++++++++++++.+.++...+|+|++|
T Consensus       283 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvvi~~  350 (350)
T cd08274         283 DLRTLYLKDLTLFGSTL-GTREVFRRLVRYIEEGEIRPVVAKTFPLSEIREAQAEFLEKRHVGKLVLVP  350 (350)
T ss_pred             CHHHhhhcceEEEEeec-CCHHHHHHHHHHHHCCCcccccccccCHHHHHHHHHHHhcCCCceEEEEeC
Confidence            33444566777777664 567889999999999999888888999999999999999888889999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=99.97  E-value=5.8e-30  Score=196.05  Aligned_cols=222  Identities=25%  Similarity=0.280  Sum_probs=185.4

Q ss_pred             CcccceEEEecCCceeeCCCC---CChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHh
Q 045248           13 GGGLAEFAVAKESSTVARPSE---VSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKL   89 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~---~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~   89 (240)
                      ..+|+||.+++.+.+.|+++.   +++.. ..+..+..|||.++.+....     ++|++|+|.+|+|++|..+.|+||.
T Consensus       100 ~~GWq~y~i~~~~~l~Kvd~~~~pl~~~L-gvLGmpG~TAY~gLl~igqp-----k~GetvvVSaAaGaVGsvvgQiAKl  173 (340)
T COG2130         100 VSGWQEYAISDGEGLRKLDPSPAPLSAYL-GVLGMPGLTAYFGLLDIGQP-----KAGETVVVSAAAGAVGSVVGQIAKL  173 (340)
T ss_pred             cccceEEEeechhhceecCCCCCCcchHH-hhcCCchHHHHHHHHHhcCC-----CCCCEEEEEecccccchHHHHHHHh
Confidence            469999999999999999854   33332 33445567999999999988     9999999999999999999999999


Q ss_pred             CCCEEEEEeC-cccHHHHHh-cCCCEEEeCCCCc-cccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCch
Q 045248           90 GNTHVTASCG-ARNIEFVKS-LGADEVLDYKTPD-GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPS  166 (240)
Q Consensus        90 ~g~~v~~~~~-~~~~~~~~~-~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~  166 (240)
                      .|++|+.++. +++.+++++ +|.+.++||+.++ .+.+.+..++|+|+.||++|++.++..+..|+.++|+..+|..+.
T Consensus       174 kG~rVVGiaGg~eK~~~l~~~lGfD~~idyk~~d~~~~L~~a~P~GIDvyfeNVGg~v~DAv~~~ln~~aRi~~CG~IS~  253 (340)
T COG2130         174 KGCRVVGIAGGAEKCDFLTEELGFDAGIDYKAEDFAQALKEACPKGIDVYFENVGGEVLDAVLPLLNLFARIPVCGAISQ  253 (340)
T ss_pred             hCCeEEEecCCHHHHHHHHHhcCCceeeecCcccHHHHHHHHCCCCeEEEEEcCCchHHHHHHHhhccccceeeeeehhh
Confidence            9999999996 589999987 9999999999988 455667778999999999999999999999999999999994321


Q ss_pred             ------HHHHHHHhhheeccceeeeEEEcC-----CHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCccc
Q 045248          167 ------AMLTFALKKLTFSKKQLVPLLLIP-----KRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGK  235 (240)
Q Consensus       167 ------~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gk  235 (240)
                            ..-......+..++.++.|+....     -.+.++++..|+.+|+|+-..+.+-+|+.+++||..+.+|+..||
T Consensus       254 YN~~~~~~gp~~l~~l~~kr~~v~Gfiv~~~~~~~~~e~~~~l~~wv~~GKi~~~eti~dGlEnaP~Af~gLl~G~N~GK  333 (340)
T COG2130         254 YNAPELPPGPRRLPLLMAKRLRVQGFIVASDYDQRFPEALRELGGWVKEGKIQYRETIVDGLENAPEAFIGLLSGKNFGK  333 (340)
T ss_pred             cCCCCCCCCcchhhHHHhhhheeEEEEechhhhhhhHHHHHHHHHHHHcCceeeEeeehhhhhccHHHHHHHhcCCccce
Confidence                  111122334455677888876621     246789999999999999877777789999999999999999999


Q ss_pred             EEEeC
Q 045248          236 IIVEP  240 (240)
Q Consensus       236 vvl~~  240 (240)
                      +|+++
T Consensus       334 ~vvKv  338 (340)
T COG2130         334 LVVKV  338 (340)
T ss_pred             EEEEe
Confidence            99874

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=99.97  E-value=1.3e-29  Score=209.53  Aligned_cols=221  Identities=20%  Similarity=0.285  Sum_probs=180.9

Q ss_pred             CCcccceEEEecCC-ceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhC
Q 045248           12 NGGGLAEFAVAKES-STVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLG   90 (240)
Q Consensus        12 ~~G~~~e~~~v~~~-~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~   90 (240)
                      ..|+|+||+.++++ .++++|+++++++++++++++.|||+++......     .++++|||+| +|++|++++|+|+.+
T Consensus       127 ~~g~~a~~~~v~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~al~~~~~~-----~~g~~vlI~g-~g~vG~~~~~lak~~  200 (361)
T cd08231         127 LSGGYAEHIYLPPGTAIVRVPDNVPDEVAAPANCALATVLAALDRAGPV-----GAGDTVVVQG-AGPLGLYAVAAAKLA  200 (361)
T ss_pred             CCcccceEEEecCCCceEECCCCCCHHHHHHhcCHHHHHHHHHHhccCC-----CCCCEEEEEC-CCHHHHHHHHHHHHc
Confidence            36999999999996 7999999999999999889999999999665555     6899999998 799999999999999


Q ss_pred             CC-EEEEEeCc-ccHHHHHhcCCCEEEeCCCCcc-----ccccCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEeC
Q 045248           91 NT-HVTASCGA-RNIEFVKSLGADEVLDYKTPDG-----AALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus        91 g~-~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~-----~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g  162 (240)
                      |+ +|++++++ ++.+.++++|++.++++.+.+.     ...+.+.+.++|++||++|+ ..+..++++++++|+++.+|
T Consensus       201 G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g  280 (361)
T cd08231         201 GARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELLRRGGTYVLVG  280 (361)
T ss_pred             CCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhCCCCCcEEEECCCChHHHHHHHHHhccCCEEEEEc
Confidence            99 99988864 7888889999998887765432     23345667789999999987 45888999999999999998


Q ss_pred             CCch-HHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCC--c--eEEecCceecchhHHHHHHHHHcCCCcccEE
Q 045248          163 PGPS-AMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEG--K--LKTVINSKHPLSKAEDAWAESIDGHATGKII  237 (240)
Q Consensus       163 ~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~--i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvv  237 (240)
                      .... ...++....+..++.++.+++. .+.+.++++++++.++  .  +.++++++|+++++++||+.+.++. .+|+|
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~-~~k~v  358 (361)
T cd08231         281 SVAPAGTVPLDPERIVRKNLTIIGVHN-YDPSHLYRAVRFLERTQDRFPFAELVTHRYPLEDINEALELAESGT-ALKVV  358 (361)
T ss_pred             CCCCCCccccCHHHHhhcccEEEEccc-CCchhHHHHHHHHHhccCcCCchhheeeeeeHHHHHHHHHHHHcCC-ceEEE
Confidence            6532 2233344456777888888764 4667889999999887  3  4457788999999999999998877 47999


Q ss_pred             EeC
Q 045248          238 VEP  240 (240)
Q Consensus       238 l~~  240 (240)
                      +++
T Consensus       359 i~~  361 (361)
T cd08231         359 IDP  361 (361)
T ss_pred             eCC
Confidence            875

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=99.97  E-value=1e-29  Score=210.68  Aligned_cols=218  Identities=17%  Similarity=0.184  Sum_probs=176.9

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      .|+|+||+++++..++++|+++++++++++++.+.|+|+++.+..++     ++|++|||+| +|++|++++|+|+.+|+
T Consensus       139 ~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~-----~~g~~VlV~G-~g~vG~~a~q~ak~~G~  212 (369)
T cd08301         139 TSTFSEYTVVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAAWNVAKV-----KKGSTVAIFG-LGAVGLAVAEGARIRGA  212 (369)
T ss_pred             cccceeEEEEecccEEECCCCCCHHHhhhhcchhhHHHHHHHhhcCC-----CCCCEEEEEC-CCHHHHHHHHHHHHcCC
Confidence            48999999999999999999999999999999989999988777888     8999999998 69999999999999999


Q ss_pred             -EEEEEeC-cccHHHHHhcCCCEEEeCCCC--c-cccccCCCCCcccEEEeCCCCC-CccccccCCCCC-cEEEEeCCCc
Q 045248           93 -HVTASCG-ARNIEFVKSLGADEVLDYKTP--D-GAALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTN-GKVIDITPGP  165 (240)
Q Consensus        93 -~v~~~~~-~~~~~~~~~~g~~~v~~~~~~--~-~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~-G~iv~~g~~~  165 (240)
                       +|+++++ +++.+.++++|++.++++.+.  . ...+....+.++|++||++|+. .+..++++++++ |+++.+|...
T Consensus       213 ~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~  292 (369)
T cd08301         213 SRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPH  292 (369)
T ss_pred             CeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhhcCCCEEEEECcCC
Confidence             8999986 489999999999998887652  2 1223222234899999999975 478889999996 9999999654


Q ss_pred             h-HHHHHHHhhheeccceeeeEEEc--CCHHHHHHHHHHHHCCceE--EecCceecchhHHHHHHHHHcCCCcccEEE
Q 045248          166 S-AMLTFALKKLTFSKKQLVPLLLI--PKRENLDFLVKLVKEGKLK--TVINSKHPLSKAEDAWAESIDGHATGKIIV  238 (240)
Q Consensus       166 ~-~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl  238 (240)
                      . ...++....+ ++++++.+++..  ..+.+++++++++.+++++  +.++++|+|+|+++||+.+.+++.. |+++
T Consensus       293 ~~~~~~~~~~~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~-k~~~  368 (369)
T cd08301         293 KDAVFSTHPMNL-LNGRTLKGTLFGGYKPKTDLPNLVEKYMKKELELEKFITHELPFSEINKAFDLLLKGECL-RCIL  368 (369)
T ss_pred             CCcccccCHHHH-hcCCeEEEEecCCCChHHHHHHHHHHHHcCCCCcHHheeeeecHHHHHHHHHHHHCCCce-eEEe
Confidence            2 1222222222 467888887642  2346789999999999875  3678999999999999999988854 8876

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.97  E-value=3.6e-29  Score=204.67  Aligned_cols=219  Identities=22%  Similarity=0.316  Sum_probs=182.4

Q ss_pred             ccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHH
Q 045248            9 VSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAK   88 (240)
Q Consensus         9 ~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~   88 (240)
                      +....|+++||+.+++..++++|+++++++++.+++.+.++|+++.. .++     .++++|+|+| +|++|++++++|+
T Consensus       112 ~~~~~g~~a~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~-~~~-----~~~~~vlV~g-~g~iG~~~~~~a~  184 (333)
T cd08296         112 GVTRDGGYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFNALRN-SGA-----KPGDLVAVQG-IGGLGHLAVQYAA  184 (333)
T ss_pred             CcccCCcceeEEEEchhheEeCCCCCCHHHhhhhhhhhHHHHHHHHh-cCC-----CCCCEEEEEC-CcHHHHHHHHHHH
Confidence            34446999999999999999999999999999999999999999944 477     8999999999 8999999999999


Q ss_pred             hCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCc-cccccCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEeCCCc
Q 045248           89 LGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus        89 ~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~~~  165 (240)
                      .+|++|++++++ ++.+.++++|++.++++.+.+ ...+...  .++|+++|++|. ..+..++++++++|+++.+|...
T Consensus       185 ~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~--~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  262 (333)
T cd08296         185 KMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQEL--GGAKLILATAPNAKAISALVGGLAPRGKLLILGAAG  262 (333)
T ss_pred             HCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhc--CCCCEEEECCCchHHHHHHHHHcccCCEEEEEecCC
Confidence            999999999865 789999999999998876654 2222222  369999999974 56888999999999999998654


Q ss_pred             hHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEe
Q 045248          166 SAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVE  239 (240)
Q Consensus       166 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~  239 (240)
                      . ..+++...+..++.++.++.. .....+..+++++.++++++.+ ..++++++.+||+.+.+++..||+|++
T Consensus       263 ~-~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~l~~~v-~~~~~~~~~~a~~~~~~~~~~gk~v~~  333 (333)
T cd08296         263 E-PVAVSPLQLIMGRKSIHGWPS-GTALDSEDTLKFSALHGVRPMV-ETFPLEKANEAYDRMMSGKARFRVVLT  333 (333)
T ss_pred             C-CCCcCHHHHhhcccEEEEeCc-CCHHHHHHHHHHHHhCCCCceE-EEEEHHHHHHHHHHHHCCCCceeEEeC
Confidence            2 233334445577888888763 5677899999999999988775 589999999999999999999999875

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd08293 PTGR2 Prostaglandin reductase

Probab=99.97  E-value=5.7e-29  Score=204.48  Aligned_cols=222  Identities=23%  Similarity=0.290  Sum_probs=167.9

Q ss_pred             cccceEEEecCCceeeCCCCCChhh----hhhhchHHHHHHHHHHhhhCCCcCCCCCC--CeEEEEcCCchHHHHHHHHH
Q 045248           14 GGLAEFAVAKESSTVARPSEVSAAE----GSGLPVAGLTAHQALTQSAGVKLDGSGQQ--KNILVTAASGGVGHYAVQLA   87 (240)
Q Consensus        14 G~~~e~~~v~~~~~~~ip~~~~~~~----aa~~~~~~~ta~~~l~~~~~~~~~~~~~g--~~vlV~G~~g~vG~~~~~~a   87 (240)
                      |+|+||++++++.++++|+++++.+    +++++..+.|||+++.+..++     +++  ++|||+|++|++|++++|+|
T Consensus       101 ~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~-----~~g~~~~VlI~ga~g~vG~~aiqlA  175 (345)
T cd08293         101 WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALIGIQEKGHI-----TPGANQTMVVSGAAGACGSLAGQIG  175 (345)
T ss_pred             CCceeEEEecHHHeEEcCccccccchhHHhhhcCcHHHHHHHHHHHhccC-----CCCCCCEEEEECCCcHHHHHHHHHH
Confidence            6899999999999999999865433    456677889999999777777     665  99999998899999999999


Q ss_pred             HhCCC-EEEEEeCc-ccHHHHHh-cCCCEEEeCCCCc-cccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCC
Q 045248           88 KLGNT-HVTASCGA-RNIEFVKS-LGADEVLDYKTPD-GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus        88 ~~~g~-~v~~~~~~-~~~~~~~~-~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~  163 (240)
                      +++|+ +|++++++ ++.+.+++ +|++.++++.+.+ ...+....++++|++||++|+..+..++++++++|+++.+|.
T Consensus       176 k~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~~~~~~~~~~l~~~G~iv~~G~  255 (345)
T cd08293         176 RLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGGEISDTVISQMNENSHIILCGQ  255 (345)
T ss_pred             HHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCcHHHHHHHHHhccCCEEEEEee
Confidence            99999 89999865 77888876 9999999887655 223332234789999999998778899999999999999884


Q ss_pred             Cch--H------HHHHHHhhh-eeccceeeeEEEcC----CHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcC
Q 045248          164 GPS--A------MLTFALKKL-TFSKKQLVPLLLIP----KRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDG  230 (240)
Q Consensus       164 ~~~--~------~~~~~~~~~-~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~  230 (240)
                      ...  .      ........+ ..+..+........    ..+.+++++++++++++++.+...++++++++||+.+.++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~A~~~~~~~  335 (345)
T cd08293         256 ISQYNKDVPYPPPLPEATEAILKERNITRERFLVLNYKDKFEEAIAQLSQWVKEGKLKVKETVYEGLENAGEAFQSMMNG  335 (345)
T ss_pred             eecccCccCccccccchhHHHhhhcceEEEEEEeeccHhHHHHHHHHHHHHHHCCCccceeEEeecHHHHHHHHHHHhcC
Confidence            211  0      000000011 11222222221111    1345788889999999987666667999999999999999


Q ss_pred             CCcccEEEeC
Q 045248          231 HATGKIIVEP  240 (240)
Q Consensus       231 ~~~gkvvl~~  240 (240)
                      +..||+|+++
T Consensus       336 ~~~gkvvl~~  345 (345)
T cd08293         336 GNIGKQIVKV  345 (345)
T ss_pred             CCCCeEEEEC
Confidence            8899999875

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08230 glucose_DH Glucose dehydrogenase

Probab=99.97  E-value=2.2e-29  Score=207.61  Aligned_cols=215  Identities=21%  Similarity=0.217  Sum_probs=164.6

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHh------hhCCCcCCCCCCCeEEEEcCCchHHHHHHH
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQ------SAGVKLDGSGQQKNILVTAASGGVGHYAVQ   85 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~------~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~   85 (240)
                      .+|+|+||++++++.++++|++++ ++ +++...+.++++++..      ..+.     +++++|+|+| +|++|++++|
T Consensus       119 ~~G~~aey~~~~~~~~~~~P~~~~-~~-a~~~~p~~~~~~a~~~~~~~~~~~~~-----~~g~~vlI~G-~G~vG~~a~q  190 (355)
T cd08230         119 LHGFMREYFVDDPEYLVKVPPSLA-DV-GVLLEPLSVVEKAIEQAEAVQKRLPT-----WNPRRALVLG-AGPIGLLAAL  190 (355)
T ss_pred             CCccceeEEEeccccEEECCCCCC-cc-eeecchHHHHHHHHHHHhhhhhhccc-----CCCCEEEEEC-CCHHHHHHHH
Confidence            469999999999999999999999 44 3333343454444422      1223     6899999999 7999999999


Q ss_pred             HHHhCCCEEEEEeC----cccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC-CccccccCCCCCcEEEE
Q 045248           86 LAKLGNTHVTASCG----ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTNGKVID  160 (240)
Q Consensus        86 ~a~~~g~~v~~~~~----~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~  160 (240)
                      +|+++|++|+++++    +++++.++++|++. +++.+++.....  ...++|+|||++|++ .+..++++++++|+++.
T Consensus       191 ~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~-v~~~~~~~~~~~--~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~  267 (355)
T cd08230         191 LLRLRGFEVYVLNRRDPPDPKADIVEELGATY-VNSSKTPVAEVK--LVGEFDLIIEATGVPPLAFEALPALAPNGVVIL  267 (355)
T ss_pred             HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE-ecCCccchhhhh--hcCCCCEEEECcCCHHHHHHHHHHccCCcEEEE
Confidence            99999999999885    46888999999986 455443322111  235899999999975 58899999999999999


Q ss_pred             eCCCch-HHHHHH----HhhheeccceeeeEEEcCCHHHHHHHHHHHHCCc------eEEecCceecchhHHHHHHHHHc
Q 045248          161 ITPGPS-AMLTFA----LKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGK------LKTVINSKHPLSKAEDAWAESID  229 (240)
Q Consensus       161 ~g~~~~-~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~------i~~~~~~~~~~~~~~~a~~~~~~  229 (240)
                      +|.... ....++    ...+.+++.++.+++. ...++++++++++.++.      ++++++++|+++|+++||+.+.+
T Consensus       268 ~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~  346 (355)
T cd08230         268 FGVPGGGREFEVDGGELNRDLVLGNKALVGSVN-ANKRHFEQAVEDLAQWKYRWPGVLERLITRRVPLEEFAEALTEKPD  346 (355)
T ss_pred             EecCCCCCccccChhhhhhhHhhcCcEEEEecC-CchhhHHHHHHHHHhcccccccchHHheeeeecHHHHHHHHHhccc
Confidence            996543 222222    3456778999999763 56678999999999876      56678999999999999998865


Q ss_pred             CCCcccEEEeC
Q 045248          230 GHATGKIIVEP  240 (240)
Q Consensus       230 ~~~~gkvvl~~  240 (240)
                      +.  +|+|+++
T Consensus       347 ~~--~K~v~~~  355 (355)
T cd08230         347 GE--IKVVIEW  355 (355)
T ss_pred             CC--eEEEeeC
Confidence            54  5999874

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=99.97  E-value=5.2e-29  Score=202.88  Aligned_cols=228  Identities=20%  Similarity=0.258  Sum_probs=183.5

Q ss_pred             eecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHH
Q 045248            6 RIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQ   85 (240)
Q Consensus         6 ~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~   85 (240)
                      ++......|+|++|+.+++..++++|++++++++++++..+.++|+++ ...++     .++++|||+|++|.+|++++|
T Consensus        85 ~V~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~~-~~~~~-----~~g~~vlI~g~~g~ig~~~~~  158 (324)
T cd08292          85 RVAVAPVHGTWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLSALMLL-DFLGV-----KPGQWLIQNAAGGAVGKLVAM  158 (324)
T ss_pred             EEEeccCCCcceeEEEEchHHeEECCCCCCHHHhhhccccHHHHHHHH-HhhCC-----CCCCEEEEcccccHHHHHHHH
Confidence            333333479999999999999999999999999999988889999998 55777     899999999989999999999


Q ss_pred             HHHhCCCEEEEEeC-cccHHHHHhcCCCEEEeCCCCcc--ccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeC
Q 045248           86 LAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPDG--AALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus        86 ~a~~~g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~--~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g  162 (240)
                      +|+.+|++++++++ +++.+.++++|++.++++.+.+.  ...+.+.++++|+++|++|+.....++++++++|+++.+|
T Consensus       159 ~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g  238 (324)
T cd08292         159 LAAARGINVINLVRRDAGVAELRALGIGPVVSTEQPGWQDKVREAAGGAPISVALDSVGGKLAGELLSLLGEGGTLVSFG  238 (324)
T ss_pred             HHHHCCCeEEEEecCHHHHHHHHhcCCCEEEcCCCchHHHHHHHHhCCCCCcEEEECCCChhHHHHHHhhcCCcEEEEEe
Confidence            99999999988886 47788888899988888765442  2335567789999999999877889999999999999998


Q ss_pred             CCchHHHHHHHhhheeccceeeeEEEcC---------CHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCc
Q 045248          163 PGPSAMLTFALKKLTFSKKQLVPLLLIP---------KRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHAT  233 (240)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~  233 (240)
                      ........+.......++.++.++....         ..+.++++++++.++.+.+.+.+.|+++++++|++.+.++...
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~  318 (324)
T cd08292         239 SMSGEPMQISSGDLIFKQATVRGFWGGRWSQEMSVEYRKRMIAELLTLALKGQLLLPVEAVFDLGDAAKAAAASMRPGRA  318 (324)
T ss_pred             cCCCCCCcCCHHHHhhCCCEEEEEEcHHhhhhcCHHHHHHHHHHHHHHHHCCCccCccccEecHHHHHHHHHHHHcCCCC
Confidence            6432222223333345666776665311         1346888999999999986677899999999999999888778


Q ss_pred             ccEEEe
Q 045248          234 GKIIVE  239 (240)
Q Consensus       234 gkvvl~  239 (240)
                      +|+|+.
T Consensus       319 ~kvvv~  324 (324)
T cd08292         319 GKVLLR  324 (324)
T ss_pred             ceEEeC
Confidence            898863

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=99.96  E-value=5.7e-29  Score=208.00  Aligned_cols=222  Identities=23%  Similarity=0.298  Sum_probs=182.6

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHh--hhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHh
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQ--SAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKL   89 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~--~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~   89 (240)
                      .+|+|+||++++++.++++|+++++++++.++..+.+||+++..  ..++     .++++++|+|++|++|++++|+|+.
T Consensus       138 ~~g~~ae~~~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~-----~~g~~vlV~Ga~g~vG~~ai~~ak~  212 (398)
T TIGR01751       138 NFGSFAEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATV-----KPGDNVLIWGAAGGLGSYATQLARA  212 (398)
T ss_pred             CCccceEEEEechHHeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCC-----CCCCEEEEEcCCcHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999854  3556     7899999999889999999999999


Q ss_pred             CCCEEEEEeC-cccHHHHHhcCCCEEEeCCCCcc------------------------ccccCCCCCcccEEEeCCCCCC
Q 045248           90 GNTHVTASCG-ARNIEFVKSLGADEVLDYKTPDG------------------------AALKSPSGRKYDAVIHCATGIP  144 (240)
Q Consensus        90 ~g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~------------------------~~~~~~~~~~~d~v~d~~g~~~  144 (240)
                      +|++++++++ +++.+.++++|++.++++.+.+.                        ...+.+.++++|++|||+|...
T Consensus       213 ~G~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~~~  292 (398)
T TIGR01751       213 GGGNPVAVVSSPEKAEYCRELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGRAT  292 (398)
T ss_pred             cCCeEEEEcCCHHHHHHHHHcCCCEEecCCCcchhhccccccccccchhhhcchhHHHHHHHHcCCCCceEEEECCcHHH
Confidence            9998887775 47889999999999998654210                        0122345578999999999877


Q ss_pred             ccccccCCCCCcEEEEeCCCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHH
Q 045248          145 WSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAW  224 (240)
Q Consensus       145 ~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~  224 (240)
                      +..++++++++|+++.+|........+....+..++.++.+... ...+.+++++++++++.+.+.+++++++++++++|
T Consensus       293 ~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~a~  371 (398)
T TIGR01751       293 FPTSVFVCRRGGMVVICGGTTGYNHDYDNRYLWMRQKRIQGSHF-ANLREAWEANRLVAKGRIDPTLSKVYPLEEIGQAH  371 (398)
T ss_pred             HHHHHHhhccCCEEEEEccccCCCCCcCHHHHhhcccEEEcccc-CcHHHHHHHHHHHHCCCcccceeeEEcHHHHHHHH
Confidence            88899999999999999865432223333444566666766553 45566889999999999998888999999999999


Q ss_pred             HHHHcCCCcccEEEe
Q 045248          225 AESIDGHATGKIIVE  239 (240)
Q Consensus       225 ~~~~~~~~~gkvvl~  239 (240)
                      +.+.++...||+|+.
T Consensus       372 ~~~~~~~~~gkvvv~  386 (398)
T TIGR01751       372 QDVHRNHHQGNVAVL  386 (398)
T ss_pred             HHHHcCCCCceEEEE
Confidence            999999989999986

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=99.96  E-value=6.9e-29  Score=203.58  Aligned_cols=229  Identities=26%  Similarity=0.350  Sum_probs=184.1

Q ss_pred             cccceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhh-hCCCcCCCCCCCeEEEEcCCchHH
Q 045248            2 CNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQS-AGVKLDGSGQQKNILVTAASGGVG   80 (240)
Q Consensus         2 c~~~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~-~~~~~~~~~~g~~vlV~G~~g~vG   80 (240)
                      |+++.+.+...+|+|++|+.++++.++++|++++++++++++..+.|||+++... ..+     .++++|||+| +|++|
T Consensus       107 ~~~~~~~~~~~~g~~~~~~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~~l~~~~~~~-----~~~~~vlI~g-~~~vg  180 (340)
T cd05284         107 CENARFPGIGTDGGFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAVKKALPYL-----DPGSTVVVIG-VGGLG  180 (340)
T ss_pred             CCCCcccCccCCCcceeeEEecHHHeEECCCCCCHHHhhhhcchHHHHHHHHHHhcccC-----CCCCEEEEEc-CcHHH
Confidence            4445555555689999999999999999999999999999999999999999665 356     7899999999 67799


Q ss_pred             HHHHHHHHhCC-CEEEEEeC-cccHHHHHhcCCCEEEeCCCCccccc-cCCCCCcccEEEeCCCC-CCccccccCCCCCc
Q 045248           81 HYAVQLAKLGN-THVTASCG-ARNIEFVKSLGADEVLDYKTPDGAAL-KSPSGRKYDAVIHCATG-IPWSTFEPNLGTNG  156 (240)
Q Consensus        81 ~~~~~~a~~~g-~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~-~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G  156 (240)
                      ++++|+|+..| .+|+++++ +++.+.++++|+++++++.+.....+ +...+.++|+++|++|+ .....++++++++|
T Consensus       181 ~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~dvvld~~g~~~~~~~~~~~l~~~g  260 (340)
T cd05284         181 HIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDDVVEEVRELTGGRGADAVIDFVGSDETLALAAKLLAKGG  260 (340)
T ss_pred             HHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCCccHHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhhcCC
Confidence            99999999999 69998886 47888889999999888665421222 33455689999999996 55888999999999


Q ss_pred             EEEEeCCCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccE
Q 045248          157 KVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKI  236 (240)
Q Consensus       157 ~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkv  236 (240)
                      +++.+|....  ..........++.++.+... ...+.+.+++++++++.+++ ..+.|+++++++|++.+.+++..||+
T Consensus       261 ~~i~~g~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~g~l~~-~~~~~~~~~~~~a~~~~~~~~~~gkv  336 (340)
T cd05284         261 RYVIVGYGGH--GRLPTSDLVPTEISVIGSLW-GTRAELVEVVALAESGKVKV-EITKFPLEDANEALDRLREGRVTGRA  336 (340)
T ss_pred             EEEEEcCCCC--CccCHHHhhhcceEEEEEec-ccHHHHHHHHHHHHhCCCCc-ceEEEeHHHHHHHHHHHHcCCccceE
Confidence            9999986542  11112222356677776553 45678899999999999886 44679999999999999999889999


Q ss_pred             EEeC
Q 045248          237 IVEP  240 (240)
Q Consensus       237 vl~~  240 (240)
                      |+.|
T Consensus       337 v~~~  340 (340)
T cd05284         337 VLVP  340 (340)
T ss_pred             EecC
Confidence            9875

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=99.96  E-value=6.1e-29  Score=208.42  Aligned_cols=223  Identities=17%  Similarity=0.188  Sum_probs=172.7

Q ss_pred             CCCcccceEEEecCC----ceeeCCCCCChhhhhhh-chHH-HHHHHHHH--------hhhCCCcCCCCCCCeEEEEcCC
Q 045248           11 HNGGGLAEFAVAKES----STVARPSEVSAAEGSGL-PVAG-LTAHQALT--------QSAGVKLDGSGQQKNILVTAAS   76 (240)
Q Consensus        11 ~~~G~~~e~~~v~~~----~~~~ip~~~~~~~aa~~-~~~~-~ta~~~l~--------~~~~~~~~~~~~g~~vlV~G~~   76 (240)
                      ..+|+|+||++++++    .++++|+++++++++.+ +.+. .+++.++.        +..++     ++|++|+|+|++
T Consensus       111 ~~~G~~aey~~v~~~~~~~~~~~lP~~l~~~~aal~epl~~~~~~~~a~~~~~~~~~~~~~~~-----~~g~~VlV~G~~  185 (410)
T cd08238         111 TYPGGLATYHIIPNEVMEQDCLLIYEGDGYAEASLVEPLSCVIGAYTANYHLQPGEYRHRMGI-----KPGGNTAILGGA  185 (410)
T ss_pred             cCCCcceEEEEecHHhccCCeEECCCCCCHHHHhhcchHHHHHHHhhhcccccccchhhhcCC-----CCCCEEEEEeCC
Confidence            357999999999997    68999999999998865 4221 23444432        34566     899999999989


Q ss_pred             chHHHHHHHHHHhCCC---EEEEEeCc-ccHHHHHhc--------CCC-EEEeCCC-Cc-cc-cccCCCCCcccEEEeCC
Q 045248           77 GGVGHYAVQLAKLGNT---HVTASCGA-RNIEFVKSL--------GAD-EVLDYKT-PD-GA-ALKSPSGRKYDAVIHCA  140 (240)
Q Consensus        77 g~vG~~~~~~a~~~g~---~v~~~~~~-~~~~~~~~~--------g~~-~v~~~~~-~~-~~-~~~~~~~~~~d~v~d~~  140 (240)
                      |++|++++|+|+.+|+   +|++++++ ++++.++++        |++ .++++.+ .+ .. ..+.+.+.++|+++|++
T Consensus       186 G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~g~g~D~vid~~  265 (410)
T cd08238         186 GPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTGGQGFDDVFVFV  265 (410)
T ss_pred             CHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhCCCCCCEEEEcC
Confidence            9999999999999864   79888864 789999887        766 5676543 22 22 23345667899999999


Q ss_pred             CC-CCccccccCCCCCcEEEEeCC-Cc-hHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEE--ecCcee
Q 045248          141 TG-IPWSTFEPNLGTNGKVIDITP-GP-SAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKT--VINSKH  215 (240)
Q Consensus       141 g~-~~~~~~~~~l~~~G~iv~~g~-~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~  215 (240)
                      |. ..+..++++++++|+++.++. .. ....+++...+.++++++++++. ...++++++++++++|++++  +++++|
T Consensus       266 g~~~~~~~a~~~l~~~G~~v~~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~li~~g~i~~~~~it~~~  344 (410)
T cd08238         266 PVPELVEEADTLLAPDGCLNFFAGPVDKNFSAPLNFYNVHYNNTHYVGTSG-GNTDDMKEAIDLMAAGKLNPARMVTHIG  344 (410)
T ss_pred             CCHHHHHHHHHHhccCCeEEEEEccCCCCccccccHHHhhhcCcEEEEeCC-CCHHHHHHHHHHHHcCCCchhhcEEEEe
Confidence            86 558899999999998876643 21 11233455567788899999763 56778999999999999986  789999


Q ss_pred             cchhHHHHHHHHHcCCCcccEEEeC
Q 045248          216 PLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       216 ~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      +|+++++||+.+. ++..||+|+.+
T Consensus       345 ~l~~~~~A~~~~~-~~~~gKvvl~~  368 (410)
T cd08238         345 GLNAAAETTLNLP-GIPGGKKLIYT  368 (410)
T ss_pred             cHHHHHHHHHHhh-ccCCceEEEEC
Confidence            9999999999999 67789999864

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.96  E-value=1.8e-28  Score=201.24  Aligned_cols=225  Identities=25%  Similarity=0.374  Sum_probs=184.7

Q ss_pred             cccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHH
Q 045248            8 DVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLA   87 (240)
Q Consensus         8 ~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a   87 (240)
                      .+....|+|++|+.++++.++++|++++++++++++..+.|||+++.. .++     ++++++||+|+++++|++++++|
T Consensus       113 ~~~~~~g~~~s~~~~~~~~~~~lp~~~~~~~~a~l~~~~~ta~~~~~~-~~~-----~~~~~vlV~g~~~~vg~~~~~~a  186 (341)
T cd08297         113 SGYTVDGTFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKALKK-AGL-----KPGDWVVISGAGGGLGHLGVQYA  186 (341)
T ss_pred             cccccCCcceeEEEeccccEEECCCCCCHHHHHHHHcchHHHHHHHHh-cCC-----CCCCEEEEECCCchHHHHHHHHH
Confidence            344457999999999999999999999999999999999999999855 466     89999999998888999999999


Q ss_pred             HhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCc-cc-cccCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEeCC
Q 045248           88 KLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPD-GA-ALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus        88 ~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~-~~-~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~  163 (240)
                      +++|++|++++++ ++.+.++++|++.++++.+.+ .. ..+...++++|+++|+.++ ..+..++++++++|+++.+|.
T Consensus       187 ~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~  266 (341)
T cd08297         187 KAMGLRVIAIDVGDEKLELAKELGADAFVDFKKSDDVEAVKELTGGGGAHAVVVTAVSAAAYEQALDYLRPGGTLVCVGL  266 (341)
T ss_pred             HHCCCeEEEEeCCHHHHHHHHHcCCcEEEcCCCccHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHhhcCCEEEEecC
Confidence            9999999999865 788888999999998876644 22 3344556789999997765 558889999999999999986


Q ss_pred             CchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          164 GPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      ......++....+..++.++.+... ...+.+++++++++++.+.+.+ ..+++++++++++.+..+...||+|+++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~a~~~~~~~~~~gkvvi~~  341 (341)
T cd08297         267 PPGGFIPLDPFDLVLRGITIVGSLV-GTRQDLQEALEFAARGKVKPHI-QVVPLEDLNEVFEKMEEGKIAGRVVVDF  341 (341)
T ss_pred             CCCCCCCCCHHHHHhcccEEEEecc-CCHHHHHHHHHHHHcCCCccee-EEEcHHHHHHHHHHHHcCCccceEEEeC
Confidence            5432223333444466777777543 3578899999999999998755 5799999999999999998899999875

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=99.96  E-value=6.9e-29  Score=200.70  Aligned_cols=204  Identities=19%  Similarity=0.195  Sum_probs=159.6

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      .|+|+||++++++.++++|++++++. ++++ ...|||+++.+ . .     .++++++|+| +|++|++++|+|+++|+
T Consensus       100 ~G~~aey~~v~~~~~~~ip~~~~~~~-a~~~-~~~~a~~~~~~-~-~-----~~~~~vlV~G-~G~vG~~a~q~ak~~G~  169 (308)
T TIGR01202       100 FGGASKRLVTPASRVCRLDPALGPQG-ALLA-LAATARHAVAG-A-E-----VKVLPDLIVG-HGTLGRLLARLTKAAGG  169 (308)
T ss_pred             CCcccceEEcCHHHceeCCCCCCHHH-Hhhh-HHHHHHHHHHh-c-c-----cCCCcEEEEC-CCHHHHHHHHHHHHcCC
Confidence            69999999999999999999999864 4444 35799999944 3 2     4688999998 89999999999999999


Q ss_pred             EEE-EEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC-CccccccCCCCCcEEEEeCCCchHHH
Q 045248           93 HVT-ASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTNGKVIDITPGPSAML  169 (240)
Q Consensus        93 ~v~-~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~g~~~~~~~  169 (240)
                      +++ ++... ++++.+++.   .++++.+.        .+.++|++|||+|+. .+..++++++++|+++.+|.... ..
T Consensus       170 ~~v~~~~~~~~rl~~a~~~---~~i~~~~~--------~~~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~-~~  237 (308)
T TIGR01202       170 SPPAVWETNPRRRDGATGY---EVLDPEKD--------PRRDYRAIYDASGDPSLIDTLVRRLAKGGEIVLAGFYTE-PV  237 (308)
T ss_pred             ceEEEeCCCHHHHHhhhhc---cccChhhc--------cCCCCCEEEECCCCHHHHHHHHHhhhcCcEEEEEeecCC-Cc
Confidence            654 44433 555555443   44544321        245799999999985 48899999999999999996533 23


Q ss_pred             HHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEE--ecCceecchhHHHHHHHHHcCCCcccEEEe
Q 045248          170 TFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKT--VINSKHPLSKAEDAWAESIDGHATGKIIVE  239 (240)
Q Consensus       170 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~  239 (240)
                      .++...+..++.++.++.. ...++++++++++++|++++  +++++|+|+|+++||+.+.++...+|++++
T Consensus       238 ~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~l~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~~~Kv~~~  308 (308)
T TIGR01202       238 NFDFVPAFMKEARLRIAAE-WQPGDLHAVRELIESGALSLDGLITHQRPASDAAEAYMTAFSDPDCLKMILD  308 (308)
T ss_pred             ccccchhhhcceEEEEecc-cchhHHHHHHHHHHcCCCChhhccceeecHHHHHHHHHHHhcCcCceEEEeC
Confidence            3444556677788887653 46778999999999999874  789999999999999998877777899874

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=99.96  E-value=4.6e-28  Score=201.51  Aligned_cols=219  Identities=16%  Similarity=0.151  Sum_probs=164.4

Q ss_pred             CCcccceEEEecCC--ceeeCCCCCCh----hhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHH
Q 045248           12 NGGGLAEFAVAKES--STVARPSEVSA----AEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQ   85 (240)
Q Consensus        12 ~~G~~~e~~~v~~~--~~~~ip~~~~~----~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~   85 (240)
                      .+|+|+||+++++.  .++++|++++.    .+++++...+.++|+++ ...++     +++++|+|.| +|++|++++|
T Consensus       131 ~~G~~aey~~v~~~~~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~-~~~~~-----~~g~~VlV~G-~G~iG~~aiq  203 (393)
T TIGR02819       131 WVGGQSEYVMVPYADFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGA-VTAGV-----GPGSTVYIAG-AGPVGLAAAA  203 (393)
T ss_pred             CCCceEEEEEechhhCceEECCCcccccccccceeeeccHHHHHHHHH-HhcCC-----CCCCEEEEEC-CCHHHHHHHH
Confidence            36999999999964  79999998754    34667777888999998 55677     8999999977 8999999999


Q ss_pred             HHHhCCCEEEEE-eC-cccHHHHHhcCCCEEEeCCC-Cc-cc-cccCCCCCcccEEEeCCCCC---------------Cc
Q 045248           86 LAKLGNTHVTAS-CG-ARNIEFVKSLGADEVLDYKT-PD-GA-ALKSPSGRKYDAVIHCATGI---------------PW  145 (240)
Q Consensus        86 ~a~~~g~~v~~~-~~-~~~~~~~~~~g~~~v~~~~~-~~-~~-~~~~~~~~~~d~v~d~~g~~---------------~~  145 (240)
                      +|+.+|++++.+ ++ +++++.++++|++. +++.. .+ .. ..+.+.+.++|++||++|.+               .+
T Consensus       204 lAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~-v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~  282 (393)
T TIGR02819       204 SAQLLGAAVVIVGDLNPARLAQARSFGCET-VDLSKDATLPEQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVL  282 (393)
T ss_pred             HHHHcCCceEEEeCCCHHHHHHHHHcCCeE-EecCCcccHHHHHHHHcCCCCCcEEEECCCCccccccccccccchHHHH
Confidence            999999965444 44 46999999999974 54432 23 22 23345567899999999975               58


Q ss_pred             cccccCCCCCcEEEEeCCCc-hHH-----------HHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEE--ec
Q 045248          146 STFEPNLGTNGKVIDITPGP-SAM-----------LTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKT--VI  211 (240)
Q Consensus       146 ~~~~~~l~~~G~iv~~g~~~-~~~-----------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~--~~  211 (240)
                      .+++++++++|+++.+|... +..           .++.......++.++.+.. ....+.+.++++++++|++..  ++
T Consensus       283 ~~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~g~~-~~~~~~~~~~~~~~~~g~i~~~~~i  361 (393)
T TIGR02819       283 NSLMEVTRVGGAIGIPGLYVTEDPGAVDAAAKTGSLSIRFGLGWAKSHSFHTGQ-TPVMKYNRNLMQAILHDRVQIAKAV  361 (393)
T ss_pred             HHHHHHhhCCCEEEEeeecCCcccccccccccccccccchHHhhccCceEEecc-CChhhhHHHHHHHHHcCCCCHHHce
Confidence            89999999999999999742 111           1122233344555666532 222344578999999999864  56


Q ss_pred             C-ceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          212 N-SKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       212 ~-~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      + ++|+|+|+++||+.+.+++ .+|+++++
T Consensus       362 ~~~~~~l~~~~~a~~~~~~~~-~~Kvvi~~  390 (393)
T TIGR02819       362 NVTVISLDDAPEGYAEFDAGA-AKKFVIDP  390 (393)
T ss_pred             ecceecHHHHHHHHHHHhhCC-ceEEEEeC
Confidence            6 7899999999999998875 47999874

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=99.96  E-value=1.3e-27  Score=194.63  Aligned_cols=222  Identities=27%  Similarity=0.334  Sum_probs=180.6

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      .|+|++|+.+++..++++|+++++++++++++.+.|||..+ ....+     +++++++|+|++|++|++++++|+.+|+
T Consensus        95 ~g~~~~~~~v~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~~-~~~~~-----~~~~~vlI~g~~~~~g~~~~~la~~~g~  168 (324)
T cd08244          95 GGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTALGLL-DLATL-----TPGDVVLVTAAAGGLGSLLVQLAKAAGA  168 (324)
T ss_pred             CceeeEEEEEchHHeEeCCCCCCHHHHhhhcchHHHHHHHH-HhcCC-----CCCCEEEEEcCCchHHHHHHHHHHHCCC
Confidence            79999999999999999999999999999999999996544 67777     8999999999999999999999999999


Q ss_pred             EEEEEeCc-ccHHHHHhcCCCEEEeCCCCc-cc-cccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchHHH
Q 045248           93 HVTASCGA-RNIEFVKSLGADEVLDYKTPD-GA-ALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAML  169 (240)
Q Consensus        93 ~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~-~~-~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~  169 (240)
                      +|+++++. ++.+.++++|++.+++..+.+ .. ..+...++++|+++|++|+.....++++++++|+++.+|.......
T Consensus       169 ~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~  248 (324)
T cd08244         169 TVVGAAGGPAKTALVRALGADVAVDYTRPDWPDQVREALGGGGVTVVLDGVGGAIGRAALALLAPGGRFLTYGWASGEWT  248 (324)
T ss_pred             EEEEEeCCHHHHHHHHHcCCCEEEecCCccHHHHHHHHcCCCCceEEEECCChHhHHHHHHHhccCcEEEEEecCCCCCC
Confidence            99999864 788888999998888876544 22 2344566789999999998778889999999999999986433222


Q ss_pred             HHHHhhheeccceeeeEEEcC-----CHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          170 TFALKKLTFSKKQLVPLLLIP-----KRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       170 ~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      .+.......++.++.+.....     ..+.+.+++++++++.+.+.++..++++++++|++.+.++...||+|++|
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  324 (324)
T cd08244         249 ALDEDDARRRGVTVVGLLGVQAERGGLRALEARALAEAAAGRLVPVVGQTFPLERAAEAHAALEARSTVGKVLLLP  324 (324)
T ss_pred             ccCHHHHhhCCcEEEEeecccCCHHHHHHHHHHHHHHHHCCCccCccceEEeHHHHHHHHHHHHcCCCCceEEEeC
Confidence            222222334555665554311     14567888999999999877888999999999999999998899999875

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=99.96  E-value=7.2e-28  Score=198.39  Aligned_cols=222  Identities=21%  Similarity=0.238  Sum_probs=177.1

Q ss_pred             CCcccceEEEecCC--ceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHh
Q 045248           12 NGGGLAEFAVAKES--STVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKL   89 (240)
Q Consensus        12 ~~G~~~e~~~v~~~--~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~   89 (240)
                      .+|+|+||+.++..  .++++|++++++++++++..+.||++++ ...++     +++++|||+| +|++|++++|+|+.
T Consensus       116 ~~g~~~~y~~v~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~~-~~~~~-----~~g~~vlI~g-~g~iG~~~~~lak~  188 (351)
T cd08285         116 KDGVFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMSTGFHGA-ELANI-----KLGDTVAVFG-IGPVGLMAVAGARL  188 (351)
T ss_pred             CCcceeEEEEcchhhCceEECCCCCCHHHhhhhccchhhHHHHH-HccCC-----CCCCEEEEEC-CCHHHHHHHHHHHH
Confidence            47999999999974  8999999999999999988889999997 66777     8999999997 79999999999999


Q ss_pred             CCC-EEEEEeCc-ccHHHHHhcCCCEEEeCCCCc-cc-cccCCCCCcccEEEeCCCCC-CccccccCCCCCcEEEEeCCC
Q 045248           90 GNT-HVTASCGA-RNIEFVKSLGADEVLDYKTPD-GA-ALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus        90 ~g~-~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~-~~-~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      +|+ +|++++++ ++.+.++++|++.++++...+ .. ....+.+.++|+++|++|+. .+..++++++++|+++.+|..
T Consensus       189 ~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~  268 (351)
T cd08285         189 RGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVIIAGGGQDTFEQALKVLKPGGTISNVNYY  268 (351)
T ss_pred             cCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHhhcCCEEEEeccc
Confidence            999 68888765 788999999999999876554 22 23344567899999999974 588999999999999999864


Q ss_pred             chH-HHHHH--HhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEE---ecCceecchhHHHHHHHHHcCCC-cccEE
Q 045248          165 PSA-MLTFA--LKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKT---VINSKHPLSKAEDAWAESIDGHA-TGKII  237 (240)
Q Consensus       165 ~~~-~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~a~~~~~~~~~-~gkvv  237 (240)
                      ... ...++  ......+..++.+.+...+.+.++++++++++|++++   .+++.++++++++|++.+.+++. ..|++
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~  348 (351)
T cd08285         269 GEDDYLPIPREEWGVGMGHKTINGGLCPGGRLRMERLASLIEYGRVDPSKLLTHHFFGFDDIEEALMLMKDKPDDLIKPV  348 (351)
T ss_pred             CCCceeecChhhhhhhccccEEEEeecCCccccHHHHHHHHHcCCCChhhceeccccCHHHHHHHHHHHhcccCCeEEEE
Confidence            431 11111  1112244556665543345678999999999999887   44557999999999999998874 67999


Q ss_pred             EeC
Q 045248          238 VEP  240 (240)
Q Consensus       238 l~~  240 (240)
                      +.+
T Consensus       349 ~~~  351 (351)
T cd08285         349 IIF  351 (351)
T ss_pred             EeC
Confidence            875

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=3e-27  Score=190.94  Aligned_cols=222  Identities=29%  Similarity=0.381  Sum_probs=178.9

Q ss_pred             eecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHH
Q 045248            6 RIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQ   85 (240)
Q Consensus         6 ~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~   85 (240)
                      ++.+....|+|++|+.++++.++++|+++++++++++++.+.|||+++......      ++++++|+|+.|++|+++++
T Consensus        78 ~V~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~~~~~~~~------~~~~vli~g~~~~~g~~~~~  151 (305)
T cd08270          78 RVVGLGAMGAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGGPL------LGRRVLVTGASGGVGRFAVQ  151 (305)
T ss_pred             EEEEecCCcceeeEEEEchHHeEECCCCCCHHHHHHhHhHHHHHHHHHHHhCCC------CCCEEEEECCCcHHHHHHHH
Confidence            333443479999999999999999999999999999999999999999555433      59999999988999999999


Q ss_pred             HHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248           86 LAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus        86 ~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      +++.+|++|+.+++. ++.+.++++|++.++.....      . .++++|+++|++|+..+..++++++++|+++.+|..
T Consensus       152 ~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~------~-~~~~~d~vl~~~g~~~~~~~~~~l~~~G~~v~~g~~  224 (305)
T cd08270         152 LAALAGAHVVAVVGSPARAEGLRELGAAEVVVGGSE------L-SGAPVDLVVDSVGGPQLARALELLAPGGTVVSVGSS  224 (305)
T ss_pred             HHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecccc------c-cCCCceEEEECCCcHHHHHHHHHhcCCCEEEEEecc
Confidence            999999999999864 78999999998766543221      1 124799999999988889999999999999999864


Q ss_pred             chHHHHHHHhhhee--ccceeeeEEEc---CCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEe
Q 045248          165 PSAMLTFALKKLTF--SKKQLVPLLLI---PKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVE  239 (240)
Q Consensus       165 ~~~~~~~~~~~~~~--~~~~i~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~  239 (240)
                      .......+...+..  ++.++.+....   ...+.++.++++++++++.+.+.+++++++++++++.+.++...||+|++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  304 (305)
T cd08270         225 SGEPAVFNPAAFVGGGGGRRLYTFFLYDGEPLAADLARLLGLVAAGRLDPRIGWRGSWTEIDEAAEALLARRFRGKAVLD  304 (305)
T ss_pred             CCCcccccHHHHhcccccceEEEEEccCHHHHHHHHHHHHHHHHCCCccceeccEEcHHHHHHHHHHHHcCCCCceEEEe
Confidence            32222222333322  56677776542   12467889999999999998788899999999999999999888999987


Q ss_pred             C
Q 045248          240 P  240 (240)
Q Consensus       240 ~  240 (240)
                      +
T Consensus       305 ~  305 (305)
T cd08270         305 V  305 (305)
T ss_pred             C
Confidence            5

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=99.96  E-value=5.9e-28  Score=183.51  Aligned_cols=230  Identities=24%  Similarity=0.294  Sum_probs=190.2

Q ss_pred             ceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHH
Q 045248            5 WRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAV   84 (240)
Q Consensus         5 ~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~   84 (240)
                      |........|+|++|.+.+++.++++++.++++.||++.++.+|||.++.+.-++     ++|++|...||.+++|.+.+
T Consensus       104 ~VIp~~a~lGtW~t~~v~~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L-----~~GD~vIQNganS~VG~~Vi  178 (354)
T KOG0025|consen  104 WVIPLSANLGTWRTEAVFSESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQL-----NKGDSVIQNGANSGVGQAVI  178 (354)
T ss_pred             eEeecCCCCccceeeEeecccceEEcCCcCChhhhheeccCchHHHHHHHHHHhc-----CCCCeeeecCcccHHHHHHH
Confidence            3334455679999999999999999999999999999999999999999999999     89999999999999999999


Q ss_pred             HHHHhCCCEEEEEeCc-ccH----HHHHhcCCCEEEeCCCCcccc--ccCCCCCcccEEEeCCCCCCccccccCCCCCcE
Q 045248           85 QLAKLGNTHVTASCGA-RNI----EFVKSLGADEVLDYKTPDGAA--LKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGK  157 (240)
Q Consensus        85 ~~a~~~g~~v~~~~~~-~~~----~~~~~~g~~~v~~~~~~~~~~--~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~  157 (240)
                      |+|+++|++-+.++++ ...    +.++.+||++|+...+.....  .......++.+.|+|+|+.+.....+.|.+||.
T Consensus       179 Qlaka~GiktinvVRdR~~ieel~~~Lk~lGA~~ViTeeel~~~~~~k~~~~~~~prLalNcVGGksa~~iar~L~~Ggt  258 (354)
T KOG0025|consen  179 QLAKALGIKTINVVRDRPNIEELKKQLKSLGATEVITEEELRDRKMKKFKGDNPRPRLALNCVGGKSATEIARYLERGGT  258 (354)
T ss_pred             HHHHHhCcceEEEeecCccHHHHHHHHHHcCCceEecHHHhcchhhhhhhccCCCceEEEeccCchhHHHHHHHHhcCce
Confidence            9999999999988865 333    455789999998644332111  112244678999999999888889999999999


Q ss_pred             EEEeCCCchHHHHHHHhhheeccceeeeEEEcC----C------HHHHHHHHHHHHCCceEEecCceecchhHHHHHHHH
Q 045248          158 VIDITPGPSAMLTFALKKLTFSKKQLVPLLLIP----K------RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAES  227 (240)
Q Consensus       158 iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~  227 (240)
                      ++.+|..+..+...+...+.|+.+.++|+|+..    +      .+.+.++.++...|++........+|.+...|++..
T Consensus       259 mvTYGGMSkqPv~~~ts~lIFKdl~~rGfWvt~W~~~~~~pe~~~~~i~~~~~l~~~G~i~~~~~e~v~L~~~~tald~~  338 (354)
T KOG0025|consen  259 MVTYGGMSKQPVTVPTSLLIFKDLKLRGFWVTRWKKEHKSPEERKEMIDELCDLYRRGKLKAPNCEKVPLADHKTALDAA  338 (354)
T ss_pred             EEEecCccCCCcccccchheeccceeeeeeeeehhhccCCcHHHHHHHHHHHHHHHcCeeccccceeeechhhhHHHHHH
Confidence            999999988889999999999999999999821    1      246789999999999998777788899988888876


Q ss_pred             HcCCC-cccEEEe
Q 045248          228 IDGHA-TGKIIVE  239 (240)
Q Consensus       228 ~~~~~-~gkvvl~  239 (240)
                      .+.-. .||-++.
T Consensus       339 L~~~~~~~Kq~i~  351 (354)
T KOG0025|consen  339 LSKFGKSGKQIIV  351 (354)
T ss_pred             HHHhccCCceEEE
Confidence            65433 3455543

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=99.96  E-value=7.1e-28  Score=196.41  Aligned_cols=227  Identities=23%  Similarity=0.287  Sum_probs=170.6

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g   91 (240)
                      .+|+|+||+.++++.++++|+++++++++.+++.+.||++++........  ...+++|+|+|++|++|++++|+|+.+|
T Consensus        94 ~~g~~~~~~~v~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~--~~~~~~vlI~g~~g~vg~~~~~~a~~~g  171 (326)
T cd08289          94 HHGGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTAALSIHRLEENGL--TPEQGPVLVTGATGGVGSLAVSILAKLG  171 (326)
T ss_pred             CCCcceeEEEEcHHHeEECCCCCCHHHHhhhhhHHHHHHHHHHHHHhcCC--CCCCCEEEEEcCCchHHHHHHHHHHHCC
Confidence            47999999999999999999999999999999999999988854322100  0357899999988999999999999999


Q ss_pred             CEEEEEeC-cccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchHHHH
Q 045248           92 THVTASCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLT  170 (240)
Q Consensus        92 ~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~  170 (240)
                      ++|+++++ +++.+.++++|++.+++..+.....+....+.++|+++|++|+..+..++++++++|+++.+|.......+
T Consensus       172 ~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~i~~g~~~~~~~~  251 (326)
T cd08289         172 YEVVASTGKADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDPVGGKTLAYLLSTLQYGGSVAVSGLTGGGEVE  251 (326)
T ss_pred             CeEEEEecCHHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEECCcHHHHHHHHHHhhcCCEEEEEeecCCCCCC
Confidence            99999886 47899999999988887654322222222356799999999987788999999999999999865322222


Q ss_pred             HHHhhheeccceeeeEEEcCC-----HHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          171 FALKKLTFSKKQLVPLLLIPK-----RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       171 ~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      .....+..++.++.+......     .+.+..+.+.+....+.+.++++++++++++||+.+.+++..||+|+++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~  326 (326)
T cd08289         252 TTVFPFILRGVNLLGIDSVECPMELRRRIWRRLATDLKPTQLLNEIKQEITLDELPEALKQILQGRVTGRTVVKL  326 (326)
T ss_pred             cchhhhhhccceEEEEEeEecCchHHHHHHHHHHhhcCccccccccceEeeHHHHHHHHHHHhcCcccceEEEeC
Confidence            223334466677777642111     1223333333322333345688999999999999999999899999874

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.96  E-value=1.7e-27  Score=193.84  Aligned_cols=222  Identities=24%  Similarity=0.321  Sum_probs=180.7

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      .|+|++|+.++.+.++++|+++++.+++.++..+.+||+++.....+     .++++|+|+|++|++|++++++|+.+|+
T Consensus        90 ~g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~~~~~~~~-----~~~~~vlI~g~~~~vg~~~~~~a~~~g~  164 (323)
T cd05282          90 EGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKL-----PPGDWVIQNAANSAVGRMLIQLAKLLGF  164 (323)
T ss_pred             CCcceeEEecCHHHeEECCCCCCHHHHHHHhccHHHHHHHHHHhccC-----CCCCEEEEcccccHHHHHHHHHHHHCCC
Confidence            68999999999999999999999999999999999999998777777     7999999999889999999999999999


Q ss_pred             EEEEEeCc-ccHHHHHhcCCCEEEeCCCCc-c-ccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchHHH
Q 045248           93 HVTASCGA-RNIEFVKSLGADEVLDYKTPD-G-AALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAML  169 (240)
Q Consensus        93 ~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~-~-~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~  169 (240)
                      ++++++++ ++.+.++++|++.++++.+.+ . ...+.+.+.++|+++|++|+......+++++++|+++.+|.......
T Consensus       165 ~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~  244 (323)
T cd05282         165 KTINVVRRDEQVEELKALGADEVIDSSPEDLAQRVKEATGGAGARLALDAVGGESATRLARSLRPGGTLVNYGLLSGEPV  244 (323)
T ss_pred             eEEEEecChHHHHHHHhcCCCEEecccchhHHHHHHHHhcCCCceEEEECCCCHHHHHHHHhhCCCCEEEEEccCCCCCC
Confidence            99988864 788889999999988876543 2 23345567789999999998777788999999999999985432211


Q ss_pred             HHHHhhheeccceeeeEEEcC-----C----HHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEe
Q 045248          170 TFALKKLTFSKKQLVPLLLIP-----K----RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVE  239 (240)
Q Consensus       170 ~~~~~~~~~~~~~i~~~~~~~-----~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~  239 (240)
                      .+....+..++.++.+.....     .    .+.++++++++.++++.+.+++.+++++++++++.+.++...+|+|++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~  323 (323)
T cd05282         245 PFPRSVFIFKDITVRGFWLRQWLHSATKEAKQETFAEVIKLVEAGVLTTPVGAKFPLEDFEEAVAAAEQPGRGGKVLLT  323 (323)
T ss_pred             CCCHHHHhhcCceEEEEEehHhhccCCHHHHHHHHHHHHHHHhCCCcccCccceecHHHHHHHHHHHhcCCCCceEeeC
Confidence            222222223556666654311     1    245788999999999987778899999999999999988888899874

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=99.96  E-value=6.9e-28  Score=197.18  Aligned_cols=228  Identities=27%  Similarity=0.313  Sum_probs=181.6

Q ss_pred             cccceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHH
Q 045248            2 CNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGH   81 (240)
Q Consensus         2 c~~~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~   81 (240)
                      |+.+...+...+|+|++|+.++.+.++++|+++++.+++.+++.+.++|+++... .+     .++++++|+|++|++|+
T Consensus       104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~l~~~~~~a~~~~~~~-~~-----~~~~~vlI~g~~g~~g~  177 (334)
T PRK13771        104 CKNRLGYGEELDGFFAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGLRRA-GV-----KKGETVLVTGAGGGVGI  177 (334)
T ss_pred             CccccccccccCceeeeeeecchhceEECCCCCCHHHhhcccchHHHHHHHHHhc-CC-----CCCCEEEEECCCccHHH
Confidence            4444444445579999999999999999999999999999999999999998554 77     89999999998899999


Q ss_pred             HHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEE
Q 045248           82 YAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVID  160 (240)
Q Consensus        82 ~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~  160 (240)
                      +++|+++..|++|++++++ ++.+.++++ ++.+++.. .....+...  .++|+++|++|+..+..++++++++|+++.
T Consensus       178 ~~~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~v~~~--~~~d~~ld~~g~~~~~~~~~~l~~~G~~v~  253 (334)
T PRK13771        178 HAIQVAKALGAKVIAVTSSESKAKIVSKY-ADYVIVGS-KFSEEVKKI--GGADIVIETVGTPTLEESLRSLNMGGKIIQ  253 (334)
T ss_pred             HHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHHhcCch-hHHHHHHhc--CCCcEEEEcCChHHHHHHHHHHhcCCEEEE
Confidence            9999999999999988864 778888888 76666554 112222222  269999999998778899999999999999


Q ss_pred             eCCCchHHH-HHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEe
Q 045248          161 ITPGPSAML-TFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVE  239 (240)
Q Consensus       161 ~g~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~  239 (240)
                      +|....... .........++.++.+.. ....+.+++++++++++.+++.+++.++++++++|++.+.++...||++++
T Consensus       254 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~  332 (334)
T PRK13771        254 IGNVDPSPTYSLRLGYIILKDIEIIGHI-SATKRDVEEALKLVAEGKIKPVIGAEVSLSEIDKALEELKDKSRIGKILVK  332 (334)
T ss_pred             EeccCCCCCcccCHHHHHhcccEEEEec-CCCHHHHHHHHHHHHcCCCcceEeeeEcHHHHHHHHHHHHcCCCcceEEEe
Confidence            986432111 111222234566777654 356788999999999999988788899999999999999988888999986


Q ss_pred             C
Q 045248          240 P  240 (240)
Q Consensus       240 ~  240 (240)
                      +
T Consensus       333 ~  333 (334)
T PRK13771        333 P  333 (334)
T ss_pred             c
Confidence            4

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.96  E-value=3.4e-27  Score=193.34  Aligned_cols=216  Identities=24%  Similarity=0.344  Sum_probs=180.4

Q ss_pred             CCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhC
Q 045248           11 HNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLG   90 (240)
Q Consensus        11 ~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~   90 (240)
                      ...|+|+||+.++++.++++|+++++++++.+++.+.+||+++.. ..+     .++++++|.| +|++|++++++++.+
T Consensus       120 ~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~-~~~-----~~g~~vlV~g-~g~vG~~~~~~a~~~  192 (337)
T cd05283         120 ITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGITVYSPLKR-NGV-----GPGKRVGVVG-IGGLGHLAVKFAKAL  192 (337)
T ss_pred             cCCCcceeEEEechhheEECCCCCCHHHhhhhhhHHHHHHHHHHh-cCC-----CCCCEEEEEC-CcHHHHHHHHHHHHc
Confidence            457999999999999999999999999999999999999999844 456     7999999987 899999999999999


Q ss_pred             CCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC-ccccccCCCCCcEEEEeCCCchHH
Q 045248           91 NTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP-WSTFEPNLGTNGKVIDITPGPSAM  168 (240)
Q Consensus        91 g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~g~~~~~~  168 (240)
                      |++|++++++ ++.+.++++|++.+++....+..  + ..+.++|+++|++|... +..++++++++|+++.+|......
T Consensus       193 G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~--~-~~~~~~d~v~~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~  269 (337)
T cd05283         193 GAEVTAFSRSPSKKEDALKLGADEFIATKDPEAM--K-KAAGSLDLIIDTVSASHDLDPYLSLLKPGGTLVLVGAPEEPL  269 (337)
T ss_pred             CCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhh--h-hccCCceEEEECCCCcchHHHHHHHhcCCCEEEEEeccCCCC
Confidence            9999998865 78888999999988876543311  1 12467999999999874 889999999999999998654321


Q ss_pred             HHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEe
Q 045248          169 LTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVE  239 (240)
Q Consensus       169 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~  239 (240)
                       .++...+..++.++.+.+. ...+.++.++++++++++.+.+ +.++++++++||+.+.+++..||+|++
T Consensus       270 -~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~a~~~~~~~~~~~k~v~~  337 (337)
T cd05283         270 -PVPPFPLIFGRKSVAGSLI-GGRKETQEMLDFAAEHGIKPWV-EVIPMDGINEALERLEKGDVRYRFVLD  337 (337)
T ss_pred             -ccCHHHHhcCceEEEEecc-cCHHHHHHHHHHHHhCCCccce-EEEEHHHHHHHHHHHHcCCCcceEeeC
Confidence             2333444568888888775 5778899999999999988754 689999999999999999999999874

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=99.95  E-value=1.4e-27  Score=196.63  Aligned_cols=220  Identities=26%  Similarity=0.358  Sum_probs=180.7

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g   91 (240)
                      ..|++++|+.++.+.++++|+++++.+++++++.+.|||+++.....+     +++++|+|+| +|++|++++|+|+..|
T Consensus       126 ~~g~~~~~~~~~~~~~~~~p~~~s~~~aa~l~~~~~tA~~~~~~~~~~-----~~~~~vlI~g-~g~vg~~~~~~a~~~G  199 (350)
T cd08240         126 QDGGYAEYVIVPHSRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPL-----VADEPVVIIG-AGGLGLMALALLKALG  199 (350)
T ss_pred             ccCcceeeEEecHHHeeeCCCCCCHHHeehhhchhhhHHHHHHhcccC-----CCCCEEEEEC-CcHHHHHHHHHHHHcC
Confidence            579999999999999999999999999999999999999999766655     6899999997 8999999999999999


Q ss_pred             C-EEEEEeCc-ccHHHHHhcCCCEEEeCCCCcc-ccc-cCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEeCCCch
Q 045248           92 T-HVTASCGA-RNIEFVKSLGADEVLDYKTPDG-AAL-KSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITPGPS  166 (240)
Q Consensus        92 ~-~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~-~~~-~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~~~~  166 (240)
                      + +|++++++ ++.+.++++|++.+++..+... ..+ +...+ ++|++||++|. ..+..++++++++|+++.+|....
T Consensus       200 ~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~  278 (350)
T cd08240         200 PANIIVVDIDEAKLEAAKAAGADVVVNGSDPDAAKRIIKAAGG-GVDAVIDFVNNSATASLAFDILAKGGKLVLVGLFGG  278 (350)
T ss_pred             CCeEEEEeCCHHHHHHHHHhCCcEEecCCCccHHHHHHHHhCC-CCcEEEECCCCHHHHHHHHHHhhcCCeEEEECCCCC
Confidence            9 78888764 7889999999988887665442 222 33333 89999999986 558899999999999999986433


Q ss_pred             HHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          167 AMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       167 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      . .........+++.++.+.+. ...+.+.+++++++++.+++.....+++++++++++.+.++...||+++++
T Consensus       279 ~-~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~ll~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~~  350 (350)
T cd08240         279 E-ATLPLPLLPLRALTIQGSYV-GSLEELRELVALAKAGKLKPIPLTERPLSDVNDALDDLKAGKVVGRAVLKP  350 (350)
T ss_pred             C-CcccHHHHhhcCcEEEEccc-CCHHHHHHHHHHHHcCCCccceeeEEcHHHHHHHHHHHHcCCccceEEecC
Confidence            2 11223334557777777653 456789999999999998876777899999999999999988889999864

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=99.95  E-value=1.8e-27  Score=195.22  Aligned_cols=222  Identities=25%  Similarity=0.312  Sum_probs=178.9

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      .|+|++|+.++++.++++|+++++++++++++.+.|||+++.....+     +++++|||+|++|++|++++|+|++.|+
T Consensus        98 ~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~-----~~g~~vlI~g~~g~vg~~~~~~a~~~g~  172 (341)
T cd08290          98 LGTWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLEDFVKL-----QPGDWVIQNGANSAVGQAVIQLAKLLGI  172 (341)
T ss_pred             CccchheEeccHHHeEeCCCCCCHHHHHHhhccHHHHHHHHHhhccc-----CCCCEEEEccchhHHHHHHHHHHHHcCC
Confidence            59999999999999999999999999999999999999999777777     8999999999889999999999999999


Q ss_pred             EEEEEeCc-----ccHHHHHhcCCCEEEeCCCC---c-cccc-cCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeC
Q 045248           93 HVTASCGA-----RNIEFVKSLGADEVLDYKTP---D-GAAL-KSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus        93 ~v~~~~~~-----~~~~~~~~~g~~~v~~~~~~---~-~~~~-~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g  162 (240)
                      ++++++++     ++.+.++++|++.++++...   + ...+ ....+ ++|++|||+|+..+...+++++++|+++.+|
T Consensus       173 ~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~-~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g  251 (341)
T cd08290         173 KTINVVRDRPDLEELKERLKALGADHVLTEEELRSLLATELLKSAPGG-RPKLALNCVGGKSATELARLLSPGGTMVTYG  251 (341)
T ss_pred             eEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccccccHHHHHHHHcCC-CceEEEECcCcHhHHHHHHHhCCCCEEEEEe
Confidence            99888864     45788889999999887653   3 2222 23344 8999999999887778999999999999998


Q ss_pred             CCchHHHHHHHhhheeccceeeeEEEc-----CCH----HHHHHHHHHHHCCceEEecCcee---cchhHHHHHHHHHcC
Q 045248          163 PGPSAMLTFALKKLTFSKKQLVPLLLI-----PKR----ENLDFLVKLVKEGKLKTVINSKH---PLSKAEDAWAESIDG  230 (240)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~----~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~a~~~~~~~  230 (240)
                      ........+.......++.++.+....     .++    +.+..+++++..+++.+.....+   ++++++++++.+.++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~  331 (341)
T cd08290         252 GMSGQPVTVPTSLLIFKDITLRGFWLTRWLKRANPEEKEDMLEELAELIREGKLKAPPVEKVTDDPLEEFKDALANALKG  331 (341)
T ss_pred             ccCCCCcccCHHHHhhCCceEEEEecHHHHhhcCHHHHHHHHHHHHHHHHcCCccCCcccccccCCHHHHHHHHHHHhhc
Confidence            532222222232344566677766531     112    25888999999999987666667   999999999999998


Q ss_pred             CCcccEEEeC
Q 045248          231 HATGKIIVEP  240 (240)
Q Consensus       231 ~~~gkvvl~~  240 (240)
                      ...||+|+++
T Consensus       332 ~~~~k~v~~~  341 (341)
T cd08290         332 GGGGKQVLVM  341 (341)
T ss_pred             CCCCeEEEeC
Confidence            8889999864

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=99.95  E-value=1.6e-27  Score=197.35  Aligned_cols=222  Identities=26%  Similarity=0.346  Sum_probs=180.1

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g   91 (240)
                      ..|+|++|+.++++.++++|+++++.+++.++..+.|||+++.....+     .++++|+|+| +|++|++++++|+.+|
T Consensus       138 ~~g~~~~~~~~~~~~~~~~P~~is~~~aa~l~~~~~tA~~~l~~~~~~-----~~g~~VlI~g-~g~vG~~~~~lak~~G  211 (367)
T cd08263         138 SMGGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYGALKHAADV-----RPGETVAVIG-VGGVGSSAIQLAKAFG  211 (367)
T ss_pred             cCCcceeEEEechhhEEECCCCCCHHHHhHhcchHHHHHHHHHhcccC-----CCCCEEEEEC-CcHHHHHHHHHHHHcC
Confidence            369999999999999999999999999999999999999999777777     7899999996 8999999999999999


Q ss_pred             CE-EEEEeCc-ccHHHHHhcCCCEEEeCCCCcc--ccccCCCCCcccEEEeCCCCC-CccccccCCCCCcEEEEeCCCch
Q 045248           92 TH-VTASCGA-RNIEFVKSLGADEVLDYKTPDG--AALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTNGKVIDITPGPS  166 (240)
Q Consensus        92 ~~-v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~--~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~g~~~~  166 (240)
                      ++ |++++++ ++.+.++++|++.+++..+.+.  ...+...+.++|+++|++|+. ....++++++++|+++.++....
T Consensus       212 ~~~vi~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g~~~~  291 (367)
T cd08263         212 ASPIIAVDVRDEKLAKAKELGATHTVNAAKEDAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVVGLAPG  291 (367)
T ss_pred             CCeEEEEeCCHHHHHHHHHhCCceEecCCcccHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEccCCC
Confidence            96 8888754 7888889999999998765542  223344567899999999987 78889999999999999985432


Q ss_pred             H-HHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEE--ecCceecchhHHHHHHHHHcCCCcccEEEe
Q 045248          167 A-MLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKT--VINSKHPLSKAEDAWAESIDGHATGKIIVE  239 (240)
Q Consensus       167 ~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~  239 (240)
                      . ...+....+..++.++.+++.....+.+++++++++++.+.+  .+++.++++++.++++.+.++...||+|++
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~  367 (367)
T cd08263         292 GATAEIPITRLVRRGIKIIGSYGARPRQDLPELVGLAASGKLDPEALVTHKYKLEEINEAYENLRKGLIHGRAIVE  367 (367)
T ss_pred             CCccccCHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHcCCCCcccceeEEecHHHHHHHHHHHhcCCccceeeeC
Confidence            1 112222233345666666432223578999999999999886  367889999999999999999888999874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=99.95  E-value=1.9e-27  Score=195.42  Aligned_cols=222  Identities=21%  Similarity=0.257  Sum_probs=180.7

Q ss_pred             cCCCcccceEEEecCC--ceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHH
Q 045248           10 SHNGGGLAEFAVAKES--STVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLA   87 (240)
Q Consensus        10 ~~~~G~~~e~~~v~~~--~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a   87 (240)
                      ...+|+|++|+.+++.  .++++|+++++++++.++..+.|||+++....++     .++++++|+| +|++|++++|+|
T Consensus       112 ~~~~g~~~~~~~v~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~-----~~~~~vlV~g-~g~vg~~~~~~a  185 (345)
T cd08260         112 FTHPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRALVHQARV-----KPGEWVAVHG-CGGVGLSAVMIA  185 (345)
T ss_pred             cCCCCcceeEEEcccccCceEECCCCCCHHHhhhhccchHHHHHHHHHccCC-----CCCCEEEEEC-CCHHHHHHHHHH
Confidence            3347999999999984  8999999999999999999999999999777777     7899999999 899999999999


Q ss_pred             HhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCC-Cc-cccc-cCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEeC
Q 045248           88 KLGNTHVTASCGA-RNIEFVKSLGADEVLDYKT-PD-GAAL-KSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus        88 ~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~-~~-~~~~-~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g  162 (240)
                      +..|++|+++.++ ++.+.++++|++.+++..+ .+ ...+ +...+ ++|++||++|+ ..+...+++++++|+++.+|
T Consensus       186 ~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~-~~d~vi~~~g~~~~~~~~~~~l~~~g~~i~~g  264 (345)
T cd08260         186 SALGARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLTGG-GAHVSVDALGIPETCRNSVASLRKRGRHVQVG  264 (345)
T ss_pred             HHcCCeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCC-CCCEEEEcCCCHHHHHHHHHHhhcCCEEEEeC
Confidence            9999999988864 7888889999999998776 33 2222 33334 89999999995 55788999999999999998


Q ss_pred             CCchHH--HHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEE--ecCceecchhHHHHHHHHHcCCCcccEEE
Q 045248          163 PGPSAM--LTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKT--VINSKHPLSKAEDAWAESIDGHATGKIIV  238 (240)
Q Consensus       163 ~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvl  238 (240)
                      ......  ..+....+..++.++.+... ...+.+++++++++++++.+  .+++.+++++++++++.+.++...||+|+
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~v~  343 (345)
T cd08260         265 LTLGEEAGVALPMDRVVARELEIVGSHG-MPAHRYDAMLALIASGKLDPEPLVGRTISLDEAPDALAAMDDYATAGITVI  343 (345)
T ss_pred             CcCCCCCccccCHHHHhhcccEEEeCCc-CCHHHHHHHHHHHHcCCCChhhheeEEecHHHHHHHHHHHHcCCCCceEEe
Confidence            643221  22233334456667766543 45678999999999999875  36788999999999999999988999987


Q ss_pred             e
Q 045248          239 E  239 (240)
Q Consensus       239 ~  239 (240)
                      +
T Consensus       344 ~  344 (345)
T cd08260         344 T  344 (345)
T ss_pred             c
Confidence            5

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=99.95  E-value=2.3e-27  Score=194.40  Aligned_cols=220  Identities=23%  Similarity=0.391  Sum_probs=177.0

Q ss_pred             ccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHH
Q 045248            9 VSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAK   88 (240)
Q Consensus         9 ~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~   88 (240)
                      +...+|+++||+.++.+.++++|++++++++++++..+.|||+++ ...++     +++++|||+| +|++|++++++|+
T Consensus       111 ~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~-~~~~~-----~~g~~vlV~g-~g~vG~~~~~la~  183 (338)
T PRK09422        111 GYTVDGGMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKAI-KVSGI-----KPGQWIAIYG-AGGLGNLALQYAK  183 (338)
T ss_pred             CccccCcceeEEEEchHHeEeCCCCCCHHHeehhhcchhHHHHHH-HhcCC-----CCCCEEEEEC-CcHHHHHHHHHHH
Confidence            444579999999999999999999999999999999999999998 77777     8999999999 7999999999999


Q ss_pred             h-CCCEEEEEeCc-ccHHHHHhcCCCEEEeCCC-Cc-cccccCCCCCccc-EEEeCCCCCCccccccCCCCCcEEEEeCC
Q 045248           89 L-GNTHVTASCGA-RNIEFVKSLGADEVLDYKT-PD-GAALKSPSGRKYD-AVIHCATGIPWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus        89 ~-~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~-~~-~~~~~~~~~~~~d-~v~d~~g~~~~~~~~~~l~~~G~iv~~g~  163 (240)
                      . .|++|++++++ ++.+.++++|++.++++.. .+ ...+....+ ++| +++++.++..+..++++++++|+++.+|.
T Consensus       184 ~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~v~~~~~-~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~  262 (338)
T PRK09422        184 NVFNAKVIAVDINDDKLALAKEVGADLTINSKRVEDVAKIIQEKTG-GAHAAVVTAVAKAAFNQAVDAVRAGGRVVAVGL  262 (338)
T ss_pred             HhCCCeEEEEeCChHHHHHHHHcCCcEEecccccccHHHHHHHhcC-CCcEEEEeCCCHHHHHHHHHhccCCCEEEEEee
Confidence            8 59999999864 8899999999998888753 22 223332233 688 45555555668999999999999999985


Q ss_pred             CchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEe
Q 045248          164 GPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVE  239 (240)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~  239 (240)
                      ... ...+.......+..++.+++. ...+.++.++++++++++.+.++ .+++++++++|+.+.++...||++++
T Consensus       263 ~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~l~~~v~-~~~~~~~~~a~~~~~~~~~~gkvvv~  335 (338)
T PRK09422        263 PPE-SMDLSIPRLVLDGIEVVGSLV-GTRQDLEEAFQFGAEGKVVPKVQ-LRPLEDINDIFDEMEQGKIQGRMVID  335 (338)
T ss_pred             CCC-CceecHHHHhhcCcEEEEecC-CCHHHHHHHHHHHHhCCCCccEE-EEcHHHHHHHHHHHHcCCccceEEEe
Confidence            432 122233444556667766542 46778999999999999876655 68999999999999999888999985

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=99.95  E-value=4.3e-27  Score=191.67  Aligned_cols=225  Identities=23%  Similarity=0.264  Sum_probs=173.4

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCC-CCCeEEEEcCCchHHHHHHHHHHhC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSG-QQKNILVTAASGGVGHYAVQLAKLG   90 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~-~g~~vlV~G~~g~vG~~~~~~a~~~   90 (240)
                      .+|+|++|+.++++.++++|+++++++++.+++.+.++|+++.......+   . .+++|+|+|++|++|++++|+|+.+
T Consensus        94 ~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~---~~~~~~vlI~g~~g~vg~~~~~~a~~~  170 (325)
T cd05280          94 TDGGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFTAALSVHRLEDNGQ---TPEDGPVLVTGATGGVGSIAVAILAKL  170 (325)
T ss_pred             CCceeEEEEEEchhhEEECCCCCCHHHHHhhHHHHHHHHHHHHHHhhccC---CCCCCEEEEECCccHHHHHHHHHHHHc
Confidence            47999999999999999999999999999999999999999854432211   3 3579999998899999999999999


Q ss_pred             CCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchHHH
Q 045248           91 NTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAML  169 (240)
Q Consensus        91 g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~  169 (240)
                      |++|++++++ ++.+.++++|++.+++..+......+...++++|+++|++|+..+..++++++++|+++.+|.......
T Consensus       171 g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~  250 (325)
T cd05280         171 GYTVVALTGKEEQADYLKSLGASEVLDREDLLDESKKPLLKARWAGAIDTVGGDVLANLLKQTKYGGVVASCGNAAGPEL  250 (325)
T ss_pred             CCEEEEEeCCHHHHHHHHhcCCcEEEcchhHHHHHHHHhcCCCccEEEECCchHHHHHHHHhhcCCCEEEEEecCCCCcc
Confidence            9999888864 788999999999888765432122233344679999999999889999999999999999986432211


Q ss_pred             HHHHhhheeccceeeeEEEcC-C----HHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          170 TFALKKLTFSKKQLVPLLLIP-K----RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       170 ~~~~~~~~~~~~~i~~~~~~~-~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      ......+..++.++.+..... .    .+.++.+.+++..+ +.+.+..++++++++++++.+.+++..||+|+++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~  325 (325)
T cd05280         251 TTTVLPFILRGVSLLGIDSVNCPMELRKQVWQKLATEWKPD-LLEIVVREISLEELPEAIDRLLAGKHRGRTVVKI  325 (325)
T ss_pred             ccccchheeeeeEEEEEEeecCchhHHHHHHHHHHHHHhcC-CccceeeEecHHHHHHHHHHHhcCCcceEEEEeC
Confidence            223333445777777754421 1    23345555555666 4445778999999999999999999899999874

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=99.95  E-value=4.2e-27  Score=191.12  Aligned_cols=221  Identities=23%  Similarity=0.208  Sum_probs=176.0

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g   91 (240)
                      .+|+|++|+.+++..++++|+++++++++.++..+.|||+++.....+     .++++|+|+|++|++|++++|+|+.+|
T Consensus        93 ~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~-----~~g~~vlV~ga~g~~g~~~~~~a~~~g  167 (320)
T cd08243          93 FDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGL-----QPGDTLLIRGGTSSVGLAALKLAKALG  167 (320)
T ss_pred             CCcccceEEEcCHHHcEeCCCCCCHHHHHhcchHHHHHHHHHHHhcCC-----CCCCEEEEEcCCChHHHHHHHHHHHcC
Confidence            359999999999999999999999999999999999999999777777     899999999988999999999999999


Q ss_pred             CEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchHHH-
Q 045248           92 THVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAML-  169 (240)
Q Consensus        92 ~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~-  169 (240)
                      ++|++++++ ++.+.++++|++.+++........+... ++++|+++|++|+..+..++++++++|+++.+|....... 
T Consensus       168 ~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~-~~~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~  246 (320)
T cd08243         168 ATVTATTRSPERAALLKELGADEVVIDDGAIAEQLRAA-PGGFDKVLELVGTATLKDSLRHLRPGGIVCMTGLLGGQWTL  246 (320)
T ss_pred             CEEEEEeCCHHHHHHHHhcCCcEEEecCccHHHHHHHh-CCCceEEEECCChHHHHHHHHHhccCCEEEEEccCCCCccc
Confidence            999998864 7888899999988875422112223223 6789999999998778899999999999999986321110 


Q ss_pred             -HHHHhhh--eeccceeeeEEE-cCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEE
Q 045248          170 -TFALKKL--TFSKKQLVPLLL-IPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIV  238 (240)
Q Consensus       170 -~~~~~~~--~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl  238 (240)
                       .......  ..++.++.+... ......++.++++++.+.+++.+++.++++++++|++.+.++...+|+|+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~kvvv  319 (320)
T cd08243         247 EDFNPMDDIPSGVNLTLTGSSSGDVPQTPLQELFDFVAAGHLDIPPSKVFTFDEIVEAHAYMESNRAFGKVVV  319 (320)
T ss_pred             CCcchhhhhhhccceEEEecchhhhhHHHHHHHHHHHHCCceecccccEEcHHHHHHHHHHHHhCCCCCcEEe
Confidence             0001111  134445555432 12245688899999999998877789999999999999998888889886

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=99.95  E-value=5.5e-27  Score=192.02  Aligned_cols=222  Identities=24%  Similarity=0.343  Sum_probs=183.7

Q ss_pred             cCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHh
Q 045248           10 SHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKL   89 (240)
Q Consensus        10 ~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~   89 (240)
                      ....|+|++|+.++.+.++++|++++++++++++..+.|||+++.....+     .++++|||.| +|++|++++++|+.
T Consensus       114 ~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~l~~~~~~-----~~~~~vli~g-~g~vG~~~~~la~~  187 (338)
T cd08254         114 LGIDGGFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEV-----KPGETVLVIG-LGGLGLNAVQIAKA  187 (338)
T ss_pred             cccCCcceeeEEechHHeEECCCCCCHHHhhhhcchHHHHHHHHHhccCC-----CCCCEEEEEC-CcHHHHHHHHHHHH
Confidence            33469999999999999999999999999999999999999999777777     8999999986 79999999999999


Q ss_pred             CCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCcc-ccccCCCCCcccEEEeCCCCC-CccccccCCCCCcEEEEeCCCch
Q 045248           90 GNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDG-AALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTNGKVIDITPGPS  166 (240)
Q Consensus        90 ~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~-~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~g~~~~  166 (240)
                      .|++|++++++ ++.+.++++|.+.+++..+... ..++...+.++|+++|++|.. .+..++++++++|+++.+|....
T Consensus       188 ~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  267 (338)
T cd08254         188 MGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVVGLGRD  267 (338)
T ss_pred             cCCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHhhcCCEEEEECCCCC
Confidence            99999988864 7888889999988887665442 222445667899999999864 58889999999999999985432


Q ss_pred             HHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          167 AMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       167 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      . ..+....+..++.++.+.+ ....+.+..++++++++.+.+. .+.+++++++++++.+.+++..||+|++|
T Consensus       268 ~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~~l~~~-~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  338 (338)
T cd08254         268 K-LTVDLSDLIARELRIIGSF-GGTPEDLPEVLDLIAKGKLDPQ-VETRPLDEIPEVLERLHKGKVKGRVVLVP  338 (338)
T ss_pred             C-CccCHHHHhhCccEEEEec-cCCHHHHHHHHHHHHcCCCccc-ceeEcHHHHHHHHHHHHcCCccceEEEeC
Confidence            1 2223344556666777655 3567889999999999998876 67899999999999999999899999976

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=99.95  E-value=7.1e-27  Score=191.02  Aligned_cols=229  Identities=24%  Similarity=0.332  Sum_probs=180.8

Q ss_pred             eecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHH
Q 045248            6 RIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQ   85 (240)
Q Consensus         6 ~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~   85 (240)
                      ++.+...+|+|++|+.++.+.++++|+++++.+++.++..+.+||+++.....+     .++++|+|+|++|++|+++++
T Consensus        85 ~V~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~l~~~~~~-----~~~~~vlI~ga~g~~g~~~~~  159 (334)
T PTZ00354         85 RVMALLPGGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDV-----KKGQSVLIHAGASGVGTAAAQ  159 (334)
T ss_pred             EEEEecCCCceeeEEEecHHHcEeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC-----CCCCEEEEEcCCchHHHHHHH
Confidence            333433469999999999999999999999999999999999999999777777     899999999999999999999


Q ss_pred             HHHhCCCEEEEEeC-cccHHHHHhcCCCEEEeCCCCc--c-ccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEe
Q 045248           86 LAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPD--G-AALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDI  161 (240)
Q Consensus        86 ~a~~~g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~--~-~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~  161 (240)
                      +|+.+|++++.+.+ +++.+.++++|++.+++....+  . ...+.+.+.++|+++|++|+..+..++++++++|+++.+
T Consensus       160 ~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~l~~~g~~i~~  239 (334)
T PTZ00354        160 LAEKYGAATIITTSSEEKVDFCKKLAAIILIRYPDEEGFAPKVKKLTGEKGVNLVLDCVGGSYLSETAEVLAVDGKWIVY  239 (334)
T ss_pred             HHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChhHHHHHHHHHhCCCCceEEEECCchHHHHHHHHHhccCCeEEEE
Confidence            99999998777665 4788888999998888765533  1 223445567899999999988888999999999999998


Q ss_pred             CCCchHHHH-HHHhhheeccceeeeEEEcCC---------HHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCC
Q 045248          162 TPGPSAMLT-FALKKLTFSKKQLVPLLLIPK---------RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGH  231 (240)
Q Consensus       162 g~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~  231 (240)
                      +........ +....+..++.++.+......         .+.+++++++++++.+.+.+.+.+++++++++++.+.++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  319 (334)
T PTZ00354        240 GFMGGAKVEKFNLLPLLRKRASIIFSTLRSRSDEYKADLVASFEREVLPYMEEGEIKPIVDRTYPLEEVAEAHTFLEQNK  319 (334)
T ss_pred             ecCCCCcccccCHHHHHhhCCEEEeeeccccchhhhHHHHHHHHHHHHHHHHCCCccCccccEEcHHHHHHHHHHHHhCC
Confidence            854322211 222223334445655443110         1345778899999999887788999999999999999888


Q ss_pred             CcccEEEe
Q 045248          232 ATGKIIVE  239 (240)
Q Consensus       232 ~~gkvvl~  239 (240)
                      ..+|+|++
T Consensus       320 ~~~kvvv~  327 (334)
T PTZ00354        320 NIGKVVLT  327 (334)
T ss_pred             CCceEEEe
Confidence            78899985

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.95  E-value=9.4e-27  Score=190.37  Aligned_cols=225  Identities=28%  Similarity=0.389  Sum_probs=186.6

Q ss_pred             ccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHH
Q 045248            9 VSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAK   88 (240)
Q Consensus         9 ~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~   88 (240)
                      +...+|+|++|+.++++.++++|+++++.+++.++..+.+||+++.....+     +++++++|+| +|++|++++++++
T Consensus       108 ~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~~a~~~l~~~~~~-----~~g~~vli~g-~g~~g~~~~~~a~  181 (336)
T cd08276         108 GGPIDGVLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPL-----KPGDTVLVQG-TGGVSLFALQFAK  181 (336)
T ss_pred             ccccCceeeeEEEecHHHeEECCCCCCHHHhhhhhHHHHHHHHHHHhhcCC-----CCCCEEEEEC-CcHHHHHHHHHHH
Confidence            333478999999999999999999999999999999999999999777777     8999999996 8999999999999


Q ss_pred             hCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCC-Cc-cc-cccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248           89 LGNTHVTASCGA-RNIEFVKSLGADEVLDYKT-PD-GA-ALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus        89 ~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~-~~-~~-~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      +.|++|++++++ ++.+.++++|.+.+++... .+ .. ..+.+.++++|.++|++|+..+..++++++++|+++.+|..
T Consensus       182 ~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~l~~~G~~v~~g~~  261 (336)
T cd08276         182 AAGARVIATSSSDEKLERAKALGADHVINYRTTPDWGEEVLKLTGGRGVDHVVEVGGPGTLAQSIKAVAPGGVISLIGFL  261 (336)
T ss_pred             HcCCEEEEEeCCHHHHHHHHHcCCCEEEcCCcccCHHHHHHHHcCCCCCcEEEECCChHHHHHHHHhhcCCCEEEEEccC
Confidence            999999998865 7888888899998888665 33 22 23445667899999999987788999999999999999864


Q ss_pred             chHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          165 PSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      ..............++.++.+... ...+.+++++++++++.+.+..+..+++++++++++.+.++...+|++++.
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  336 (336)
T cd08276         262 SGFEAPVLLLPLLTKGATLRGIAV-GSRAQFEAMNRAIEAHRIRPVIDRVFPFEEAKEAYRYLESGSHFGKVVIRV  336 (336)
T ss_pred             CCCccCcCHHHHhhcceEEEEEec-CcHHHHHHHHHHHHcCCcccccCcEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence            332222233344567777777664 457789999999999988877778999999999999999888888999863

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=99.95  E-value=9.2e-27  Score=190.67  Aligned_cols=223  Identities=25%  Similarity=0.358  Sum_probs=171.6

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCC-----CCeEEEEcCCchHHHHHHHH
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQ-----QKNILVTAASGGVGHYAVQL   86 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~-----g~~vlV~G~~g~vG~~~~~~   86 (240)
                      ..|+|++|++++++.++++|+++++++++.+++++.|||+++....++     .+     +++|||+|++|++|++++|+
T Consensus        94 ~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~-----~~~~~~~g~~vlV~ga~g~vg~~~~~~  168 (336)
T TIGR02817        94 RPGSNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRLGI-----NDPVAGDKRALLIIGGAGGVGSILIQL  168 (336)
T ss_pred             CCCcccceEEEcHHHcccCCCCCCHHHHhhhhHHHHHHHHHHHHhcCC-----CCCCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            369999999999999999999999999999999999999999777777     55     99999999999999999999


Q ss_pred             HHhC-CCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEeCC
Q 045248           87 AKLG-NTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus        87 a~~~-g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~  163 (240)
                      |+.+ |++|++++++ ++.+.++++|+++++++.......+....++++|+++|++++ .....++++++++|+++.++.
T Consensus       169 ak~~~G~~vi~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~G~~v~~~~  248 (336)
T TIGR02817       169 ARQLTGLTVIATASRPESQEWVLELGAHHVIDHSKPLKAQLEKLGLEAVSYVFSLTHTDQHFKEIVELLAPQGRFALIDD  248 (336)
T ss_pred             HHHhCCCEEEEEcCcHHHHHHHHHcCCCEEEECCCCHHHHHHHhcCCCCCEEEEcCCcHHHHHHHHHHhccCCEEEEEcc
Confidence            9998 9999999864 788999999999999865422233333455689999999865 668899999999999998864


Q ss_pred             CchHHHH-HHHhhheeccceee-eEEE-cC----CHHHHHHHHHHHHCCceEEecCceec---chhHHHHHHHHHcCCCc
Q 045248          164 GPSAMLT-FALKKLTFSKKQLV-PLLL-IP----KRENLDFLVKLVKEGKLKTVINSKHP---LSKAEDAWAESIDGHAT  233 (240)
Q Consensus       164 ~~~~~~~-~~~~~~~~~~~~i~-~~~~-~~----~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~a~~~~~~~~~~  233 (240)
                      ....... +..+.+.+....+. .... .+    ....++++++++.++.+++.+++.++   ++++++|++.+.+++..
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  328 (336)
T TIGR02817       249 PAELDISPFKRKSISLHWEFMFTRSMFQTADMIEQHHLLNRVARLVDAGKIRTTLAETFGTINAANLKRAHALIESGKAR  328 (336)
T ss_pred             cccccchhhhhcceEEEEEEeecccccchhhhhhhHHHHHHHHHHHHCCCeeccchhccCCCCHHHHHHHHHHHHcCCcc
Confidence            3211111 11121222221111 0000 01    12457899999999999887666664   68999999999999888


Q ss_pred             ccEEEe
Q 045248          234 GKIIVE  239 (240)
Q Consensus       234 gkvvl~  239 (240)
                      ||+|+.
T Consensus       329 gkvvv~  334 (336)
T TIGR02817       329 GKIVLE  334 (336)
T ss_pred             ceEEEe
Confidence            999874

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>PRK10083 putative oxidoreductase; Provisional

Probab=99.95  E-value=6.3e-27  Score=191.90  Aligned_cols=220  Identities=17%  Similarity=0.182  Sum_probs=170.0

Q ss_pred             ccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHH
Q 045248            9 VSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAK   88 (240)
Q Consensus         9 ~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~   88 (240)
                      +...+|+|+||+.++...++++|+++++++++ +...+.+++++. ...++     +++++|+|+| +|++|++++|+|+
T Consensus       110 ~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a~-~~~~~~~a~~~~-~~~~~-----~~g~~vlI~g-~g~vG~~~~~~a~  181 (339)
T PRK10083        110 GVHRDGGFSEYAVVPAKNAHRIPDAIADQYAV-MVEPFTIAANVT-GRTGP-----TEQDVALIYG-AGPVGLTIVQVLK  181 (339)
T ss_pred             EEccCCcceeeEEechHHeEECcCCCCHHHHh-hhchHHHHHHHH-HhcCC-----CCCCEEEEEC-CCHHHHHHHHHHH
Confidence            44457999999999999999999999998876 445567788655 67777     8999999999 8999999999999


Q ss_pred             h-CCCE-EEEEeC-cccHHHHHhcCCCEEEeCCCCc-cccccCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEeCC
Q 045248           89 L-GNTH-VTASCG-ARNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus        89 ~-~g~~-v~~~~~-~~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~  163 (240)
                      . +|++ ++++++ +++.+.++++|++.++++.+.+ ...+.. .+.++|++||++|. ..+..++++++++|+++.+|.
T Consensus       182 ~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~-~g~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~  260 (339)
T PRK10083        182 GVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEE-KGIKPTLIIDAACHPSILEEAVTLASPAARIVLMGF  260 (339)
T ss_pred             HhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhc-CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcc
Confidence            6 6995 666665 4788999999999999876543 222221 23356799999996 458899999999999999986


Q ss_pred             CchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEE--ecCceecchhHHHHHHHHHcCC-CcccEEEeC
Q 045248          164 GPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKT--VINSKHPLSKAEDAWAESIDGH-ATGKIIVEP  240 (240)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~a~~~~~~~~-~~gkvvl~~  240 (240)
                      ... ........+..++.++.+..  ...+.+++++++++++++.+  ++++.|+++++++|++.+.++. ..+|+|+++
T Consensus       261 ~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~kvvv~~  337 (339)
T PRK10083        261 SSE-PSEIVQQGITGKELSIFSSR--LNANKFPVVIDWLSKGLIDPEKLITHTFDFQHVADAIELFEKDQRHCCKVLLTF  337 (339)
T ss_pred             CCC-CceecHHHHhhcceEEEEEe--cChhhHHHHHHHHHcCCCChHHheeeeecHHHHHHHHHHHhcCCCceEEEEEec
Confidence            532 11122223334566666654  35678999999999999986  4778999999999999998653 568999864

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=99.95  E-value=7.1e-27  Score=190.85  Aligned_cols=228  Identities=28%  Similarity=0.339  Sum_probs=180.9

Q ss_pred             cccceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHH
Q 045248            2 CNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGH   81 (240)
Q Consensus         2 c~~~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~   81 (240)
                      |++....+....|+|++|++++...++++|++++++++++++..+.+||+++.. ..+     .++++++|+|++|++|+
T Consensus       104 ~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~-~~~-----~~~~~vlI~ga~g~vG~  177 (332)
T cd08259         104 CRNRAEYGEEVDGGFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHALKR-AGV-----KKGDTVLVTGAGGGVGI  177 (332)
T ss_pred             CCCccccccccCCeeeeEEEechhheEECCCCCCHHHHhhhccHHHHHHHHHHH-hCC-----CCCCEEEEECCCCHHHH
Confidence            433333344457999999999999999999999999999999999999999965 777     78999999999999999


Q ss_pred             HHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEE
Q 045248           82 YAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVID  160 (240)
Q Consensus        82 ~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~  160 (240)
                      +++++++..|++|++++++ ++.+.++++|.+.+++..+ ....+...  .++|++++++|......++++++++|+++.
T Consensus       178 ~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~d~v~~~~g~~~~~~~~~~~~~~g~~v~  254 (332)
T cd08259         178 HAIQLAKALGARVIAVTRSPEKLKILKELGADYVIDGSK-FSEDVKKL--GGADVVIELVGSPTIEESLRSLNKGGRLVL  254 (332)
T ss_pred             HHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCcEEEecHH-HHHHHHhc--cCCCEEEECCChHHHHHHHHHhhcCCEEEE
Confidence            9999999999999988864 7788888889887776543 21222222  279999999998778889999999999999


Q ss_pred             eCCCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEe
Q 045248          161 ITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVE  239 (240)
Q Consensus       161 ~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~  239 (240)
                      ++...............+++.++.+.. ....+.+++++++++++.+++.+++.++++++++|++.+.++...||+|++
T Consensus       255 ~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~  332 (332)
T cd08259         255 IGNVTPDPAPLRPGLLILKEIRIIGSI-SATKADVEEALKLVKEGKIKPVIDRVVSLEDINEALEDLKSGKVVGRIVLK  332 (332)
T ss_pred             EcCCCCCCcCCCHHHHHhCCcEEEEec-CCCHHHHHHHHHHHHcCCCccceeEEEcHHHHHHHHHHHHcCCcccEEEeC
Confidence            985432211111112224555555554 356788999999999999988888899999999999999998888999874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.95  E-value=1.1e-26  Score=189.25  Aligned_cols=222  Identities=23%  Similarity=0.333  Sum_probs=171.9

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhh--hCCCcCCCCCCC-eEEEEcCCchHHHHHHHHHH
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQS--AGVKLDGSGQQK-NILVTAASGGVGHYAVQLAK   88 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~--~~~~~~~~~~g~-~vlV~G~~g~vG~~~~~~a~   88 (240)
                      .+|+|++|+.++++.++++|+++++++++.++..+.+++.++...  .++     .+++ +|+|+|++|++|.+++++|+
T Consensus        93 ~~g~~~~~~~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~-----~~~~~~vlI~g~~g~vg~~~~~la~  167 (323)
T TIGR02823        93 HDGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSVMALERNGL-----TPEDGPVLVTGATGGVGSLAVAILS  167 (323)
T ss_pred             CCccceEEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHHhhhcCC-----CCCCceEEEEcCCcHHHHHHHHHHH
Confidence            479999999999999999999999999999999999998887433  235     6888 99999988999999999999


Q ss_pred             hCCCEEEEEeC-cccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchH
Q 045248           89 LGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSA  167 (240)
Q Consensus        89 ~~g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~  167 (240)
                      .+|++++++++ +++.+.++++|++.+++..+.+. .+....+.++|+++|++|++.+..++++++++|+++.+|.....
T Consensus       168 ~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~  246 (323)
T TIGR02823       168 KLGYEVVASTGKAEEEDYLKELGASEVIDREDLSP-PGKPLEKERWAGAVDTVGGHTLANVLAQLKYGGAVAACGLAGGP  246 (323)
T ss_pred             HcCCeEEEEeCCHHHHHHHHhcCCcEEEccccHHH-HHHHhcCCCceEEEECccHHHHHHHHHHhCCCCEEEEEcccCCC
Confidence            99999888775 47778899999988887654322 22222233599999999988888999999999999999864322


Q ss_pred             HHHHHHhhheeccceeeeEEEc--C---CHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          168 MLTFALKKLTFSKKQLVPLLLI--P---KRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       168 ~~~~~~~~~~~~~~~i~~~~~~--~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      ..+.....+..++.++.+....  .   ..+.+..+.+++..+.+.+. .+.++++++++||+.+.+++..||+|+++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~a~~~~~~~~~~~k~vv~~  323 (323)
T TIGR02823       247 DLPTTVLPFILRGVSLLGIDSVYCPMALREAAWQRLATDLKPRNLESI-TREITLEELPEALEQILAGQHRGRTVVDV  323 (323)
T ss_pred             CccccHHHHhhcceEEEEEeccccCchhHHHHHHHHHHHhhcCCCcCc-eeeecHHHHHHHHHHHhCCCccceEEEeC
Confidence            2222222333556666665431  1   12346677777778887654 45899999999999999999899999864

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=99.95  E-value=1.1e-26  Score=192.17  Aligned_cols=217  Identities=17%  Similarity=0.169  Sum_probs=175.9

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      .|+|++|+.++++.++++|++++++++++++.++.+||+++....++     +++++|||+| +|++|++++++|+.+|+
T Consensus       135 ~g~~a~~~~v~~~~~~~lP~~~~~~~a~~~~~~~~ta~~al~~~~~~-----~~g~~vlI~g-~g~vG~~a~~~a~~~G~  208 (365)
T cd05279         135 TSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNTAKV-----TPGSTCAVFG-LGGVGLSVIMGCKAAGA  208 (365)
T ss_pred             cccccceEEecCCceEECCCCCCHHHhhHhccchhHHHHHHHhccCC-----CCCCEEEEEC-CCHHHHHHHHHHHHcCC
Confidence            47999999999999999999999999999998999999998788888     8999999997 79999999999999999


Q ss_pred             E-EEEEeC-cccHHHHHhcCCCEEEeCCCC--c-cccc-cCCCCCcccEEEeCCCC-CCccccccCCC-CCcEEEEeCCC
Q 045248           93 H-VTASCG-ARNIEFVKSLGADEVLDYKTP--D-GAAL-KSPSGRKYDAVIHCATG-IPWSTFEPNLG-TNGKVIDITPG  164 (240)
Q Consensus        93 ~-v~~~~~-~~~~~~~~~~g~~~v~~~~~~--~-~~~~-~~~~~~~~d~v~d~~g~-~~~~~~~~~l~-~~G~iv~~g~~  164 (240)
                      + |+++.+ +++.+.++++|++.+++..+.  + ...+ +.+ ++++|+++|++|. ..+..++++++ ++|+++.+|..
T Consensus       209 ~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~~-~~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  287 (365)
T cd05279         209 SRIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEMT-DGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVP  287 (365)
T ss_pred             CeEEEEeCCHHHHHHHHHhCCCeecccccccchHHHHHHHHh-CCCCcEEEECCCCHHHHHHHHHHhccCCCEEEEEecC
Confidence            4 677774 578899999999999887655  3 1222 333 4689999999986 55888999999 99999998854


Q ss_pred             c-hHHHHHHHhhheeccceeeeEEEc--CCHHHHHHHHHHHHCCceEE--ecCceecchhHHHHHHHHHcCCCcccEEE
Q 045248          165 P-SAMLTFALKKLTFSKKQLVPLLLI--PKRENLDFLVKLVKEGKLKT--VINSKHPLSKAEDAWAESIDGHATGKIIV  238 (240)
Q Consensus       165 ~-~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvl  238 (240)
                      . ....++....+ .++.++.+.+..  ...+.+.+++++++++.+.+  .++++++++++++||+.+.+++.. |+++
T Consensus       288 ~~~~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~-~~~~  364 (365)
T cd05279         288 PSGTEATLDPNDL-LTGRTIKGTVFGGWKSKDSVPKLVALYRQKKFPLDELITHVLPFEEINDGFDLMRSGESI-RTIL  364 (365)
T ss_pred             CCCCceeeCHHHH-hcCCeEEEEeccCCchHhHHHHHHHHHHcCCcchhHheeeeecHHHHHHHHHHHhCCCce-eeee
Confidence            3 22233344444 566777776542  45678999999999999874  577889999999999998877654 6665

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.95  E-value=2.4e-28  Score=213.13  Aligned_cols=230  Identities=23%  Similarity=0.254  Sum_probs=191.3

Q ss_pred             ceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHH
Q 045248            5 WRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAV   84 (240)
Q Consensus         5 ~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~   84 (240)
                      .++++.-..-++++.+.++.+++|.+|.+..++||++.|+.|.|+|+++..+..+     ++|+++||++|+||+|++++
T Consensus      1496 rRvM~mvpAksLATt~l~~rd~lWevP~~WTleeAstVP~VYsTaYYALVvRG~m-----kkGekiLIHaGsGGVGQAAI 1570 (2376)
T KOG1202|consen 1496 RRVMGMVPAKSLATTVLASRDFLWEVPSKWTLEEASTVPVVYSTAYYALVVRGQM-----KKGEKILIHAGSGGVGQAAI 1570 (2376)
T ss_pred             cEEEEeeehhhhhhhhhcchhhhhhCCcccchhhcccCceEeeeehhhhhhhccc-----cCCcEEEEecCCCchhHHHH
Confidence            4555665567889999999999999999999999999999999999999999988     99999999999999999999


Q ss_pred             HHHHhCCCEEEEEeCc-ccHHHHHh----cCCCEEEeCCCCccc--cccCCCCCcccEEEeCCCCCCccccccCCCCCcE
Q 045248           85 QLAKLGNTHVTASCGA-RNIEFVKS----LGADEVLDYKTPDGA--ALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGK  157 (240)
Q Consensus        85 ~~a~~~g~~v~~~~~~-~~~~~~~~----~g~~~v~~~~~~~~~--~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~  157 (240)
                      .+|-++|++|+.++.+ ++++++.+    +...++-|.++.++.  ++..+.++|+|+|+++...+-++.+++||+.+|+
T Consensus      1571 aiALa~G~~VFTTVGSaEKRefL~~rFPqLqe~~~~NSRdtsFEq~vl~~T~GrGVdlVLNSLaeEkLQASiRCLa~~GR 1650 (2376)
T KOG1202|consen 1571 AIALAHGCTVFTTVGSAEKREFLLKRFPQLQETNFANSRDTSFEQHVLWHTKGRGVDLVLNSLAEEKLQASIRCLALHGR 1650 (2376)
T ss_pred             HHHHHcCCEEEEecCcHHHHHHHHHhchhhhhhcccccccccHHHHHHHHhcCCCeeeehhhhhHHHHHHHHHHHHhcCe
Confidence            9999999999999975 88888853    334566666666643  4578899999999999999889999999999999


Q ss_pred             EEEeCCC-----chHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCC----ceEEecCceecchhHHHHHHHHH
Q 045248          158 VIDITPG-----PSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEG----KLKTVINSKHPLSKAEDAWAESI  228 (240)
Q Consensus       158 iv~~g~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~~a~~~~~  228 (240)
                      +..+|.-     ...-++.+.++.+++++-+..+. ....+++.++..++++|    -++|+.+++|+-.++++||+.|.
T Consensus      1651 FLEIGKfDLSqNspLGMavfLkNvsfHGiLLDsvm-ege~e~~~ev~~Lv~eGIksGvV~PL~ttvF~~~qvE~AFRfMa 1729 (2376)
T KOG1202|consen 1651 FLEIGKFDLSQNSPLGMAVFLKNVSFHGILLDSVM-EGEEEMWREVAALVAEGIKSGVVRPLPTTVFHGQQVEDAFRFMA 1729 (2376)
T ss_pred             eeeecceecccCCcchhhhhhcccceeeeehhhhh-cCcHHHHHHHHHHHHhhhccCceeccccccccHHHHHHHHHHHh
Confidence            9999842     22234445555555554443332 46778888888888876    47899999999999999999999


Q ss_pred             cCCCcccEEEeC
Q 045248          229 DGHATGKIIVEP  240 (240)
Q Consensus       229 ~~~~~gkvvl~~  240 (240)
                      +|+.+||||+++
T Consensus      1730 sGKHIGKVvikv 1741 (2376)
T KOG1202|consen 1730 SGKHIGKVVIKV 1741 (2376)
T ss_pred             ccCccceEEEEE
Confidence            999999999863

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=99.95  E-value=2.5e-26  Score=188.13  Aligned_cols=233  Identities=28%  Similarity=0.429  Sum_probs=187.1

Q ss_pred             cccceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHH
Q 045248            2 CNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGH   81 (240)
Q Consensus         2 c~~~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~   81 (240)
                      |..+.+.+....|++++|+.++++.++++|+++++++++.++..+.++++++.+...+     .++++++|+|+++++|+
T Consensus       107 ~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~~a~~~l~~~~~~-----~~~~~vlI~g~~~~iG~  181 (342)
T cd08266         107 CAQYGILGEHVDGGYAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLTAWHMLVTRARL-----RPGETVLVHGAGSGVGS  181 (342)
T ss_pred             cccccccccccCcceeEEEEechHHceeCCCCCCHHHHHhhhhHHHHHHHHHHHhcCC-----CCCCEEEEECCCchHHH
Confidence            4444444555679999999999999999999999999999999999999998777777     89999999998889999


Q ss_pred             HHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCc--cccccCCCCCcccEEEeCCCCCCccccccCCCCCcEE
Q 045248           82 YAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKV  158 (240)
Q Consensus        82 ~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~i  158 (240)
                      +++++++..|++|+.++++ ++.+.+++.+.+.+++..+.+  ....+...+.++|+++|++|...+...+++++++|++
T Consensus       182 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~g~~~~~~~~~~l~~~G~~  261 (342)
T cd08266         182 AAIQIAKLFGATVIATAGSEDKLERAKELGADYVIDYRKEDFVREVRELTGKRGVDVVVEHVGAATWEKSLKSLARGGRL  261 (342)
T ss_pred             HHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCeEEecCChHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHhhcCCEE
Confidence            9999999999999888865 677888888887777655433  1222334456899999999987788899999999999


Q ss_pred             EEeCCCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEE
Q 045248          159 IDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIV  238 (240)
Q Consensus       159 v~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl  238 (240)
                      +.++................++.++.+... .....+.+++++++++.+++.+++.|++++++++++.+.++...+|+|+
T Consensus       262 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~  340 (342)
T cd08266         262 VTCGATTGYEAPIDLRHVFWRQLSILGSTM-GTKAELDEALRLVFRGKLKPVIDSVFPLEEAAEAHRRLESREQFGKIVL  340 (342)
T ss_pred             EEEecCCCCCCCcCHHHHhhcceEEEEEec-CCHHHHHHHHHHHHcCCcccceeeeEcHHHHHHHHHHHHhCCCCceEEE
Confidence            999854332222222233455666666553 4667889999999999998888889999999999999998888899998


Q ss_pred             eC
Q 045248          239 EP  240 (240)
Q Consensus       239 ~~  240 (240)
                      ++
T Consensus       341 ~~  342 (342)
T cd08266         341 TP  342 (342)
T ss_pred             eC
Confidence            74

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=99.95  E-value=1.9e-26  Score=189.39  Aligned_cols=220  Identities=22%  Similarity=0.303  Sum_probs=176.7

Q ss_pred             cCCCcccceEEEecCCc-----eeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHH
Q 045248           10 SHNGGGLAEFAVAKESS-----TVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAV   84 (240)
Q Consensus        10 ~~~~G~~~e~~~v~~~~-----~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~   84 (240)
                      ....|+|++|+.++++.     ++++|+++++++++.+ ..+.+||+++ ...++     +++++|+|+| +|++|++++
T Consensus       111 ~~~~g~~~~~v~v~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~l-~~~~~-----~~g~~VlV~g-~g~vg~~~~  182 (343)
T cd08235         111 NLYDGGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAALV-EPLACCINAQ-RKAGI-----KPGDTVLVIG-AGPIGLLHA  182 (343)
T ss_pred             cCCCCcceeeEEecccccccccEEECCCCCCHHHHHhh-hHHHHHHHHH-HhcCC-----CCCCEEEEEC-CCHHHHHHH
Confidence            33579999999999998     9999999999999776 6778999999 44577     8999999997 799999999


Q ss_pred             HHHHhCCCE-EEEEeC-cccHHHHHhcCCCEEEeCCCCcc--ccccCCCCCcccEEEeCCCCC-CccccccCCCCCcEEE
Q 045248           85 QLAKLGNTH-VTASCG-ARNIEFVKSLGADEVLDYKTPDG--AALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTNGKVI  159 (240)
Q Consensus        85 ~~a~~~g~~-v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~--~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv  159 (240)
                      |+|+..|++ |+++.+ +++.+.++++|.+.++++.+.+.  ...+...+.++|+++|++|+. .+..++++++++|+++
T Consensus       183 ~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v  262 (343)
T cd08235         183 MLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDAAEEDLVEKVRELTDGRGADVVIVATGSPEAQAQALELVRKGGRIL  262 (343)
T ss_pred             HHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEecCCccCHHHHHHHHhCCcCCCEEEECCCChHHHHHHHHHhhcCCEEE
Confidence            999999998 888775 47788888999988888776542  223345567799999999975 5788899999999999


Q ss_pred             EeCCCchH-HHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceE--EecCceecchhHHHHHHHHHcCCCcccE
Q 045248          160 DITPGPSA-MLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLK--TVINSKHPLSKAEDAWAESIDGHATGKI  236 (240)
Q Consensus       160 ~~g~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~a~~~~~~~~~~gkv  236 (240)
                      .++..... ..........+++.++.+.. ....+.+++++++++++.+.  +.+...+++++++++++.+.+++ .+|+
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~-~~k~  340 (343)
T cd08235         263 FFGGLPKGSTVNIDPNLIHYREITITGSY-AASPEDYKEALELIASGKIDVKDLITHRFPLEDIEEAFELAADGK-SLKI  340 (343)
T ss_pred             EEeccCCCCCcccCHHHHhhCceEEEEEe-cCChhhHHHHHHHHHcCCCChHHheeeEeeHHHHHHHHHHHhCCC-cEEE
Confidence            98853321 12222344556777777655 35667899999999999986  34567899999999999999998 8999


Q ss_pred             EEe
Q 045248          237 IVE  239 (240)
Q Consensus       237 vl~  239 (240)
                      |++
T Consensus       341 vi~  343 (343)
T cd08235         341 VIT  343 (343)
T ss_pred             EeC
Confidence            874

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=99.95  E-value=1.5e-26  Score=189.92  Aligned_cols=217  Identities=22%  Similarity=0.306  Sum_probs=174.2

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g   91 (240)
                      ..|+|++|++++++.++++|+++++++++++ ..+.+|++++ ....+     +++++++|+| +|++|++++|+|+.+|
T Consensus       115 ~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~~-~~~~~-----~~g~~vlI~g-~g~vG~~a~~lak~~G  186 (343)
T cd05285         115 VDGTLCRYVNHPADFCHKLPDNVSLEEGALV-EPLSVGVHAC-RRAGV-----RPGDTVLVFG-AGPIGLLTAAVAKAFG  186 (343)
T ss_pred             CCCceeeeEEecHHHcEECcCCCCHHHhhhh-hHHHHHHHHH-HhcCC-----CCCCEEEEEC-CCHHHHHHHHHHHHcC
Confidence            4699999999999999999999999999876 4667899987 77888     8999999987 7999999999999999


Q ss_pred             CE-EEEEeC-cccHHHHHhcCCCEEEeCCCCcc----c-cccCCCCCcccEEEeCCCCC-CccccccCCCCCcEEEEeCC
Q 045248           92 TH-VTASCG-ARNIEFVKSLGADEVLDYKTPDG----A-ALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus        92 ~~-v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~----~-~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~g~  163 (240)
                      ++ |+++.+ +++.+.++++|++.+++..+.+.    . ..+.+.+.++|+++||+|+. .+...+++++++|+++.+|.
T Consensus       187 ~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~  266 (343)
T cd05285         187 ATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPDVVIECTGAESCIQTAIYATRPGGTVVLVGM  266 (343)
T ss_pred             CcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcc
Confidence            96 888876 47888889999999988765432    1 23445667899999999986 68889999999999999985


Q ss_pred             CchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceE--EecCceecchhHHHHHHHHHcCC-CcccEEEe
Q 045248          164 GPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLK--TVINSKHPLSKAEDAWAESIDGH-ATGKIIVE  239 (240)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~a~~~~~~~~-~~gkvvl~  239 (240)
                      .... ...+...+.+++.++.+...  ..+.+++++++++++.+.  +.+.+.++++++.+|++.+.++. ..+|+++.
T Consensus       267 ~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~  342 (343)
T cd05285         267 GKPE-VTLPLSAASLREIDIRGVFR--YANTYPTAIELLASGKVDVKPLITHRFPLEDAVEAFETAAKGKKGVIKVVIE  342 (343)
T ss_pred             CCCC-CccCHHHHhhCCcEEEEecc--ChHHHHHHHHHHHcCCCCchHhEEEEEeHHHHHHHHHHHHcCCCCeeEEEEe
Confidence            4321 22222345567777776542  347789999999999865  45667899999999999999874 45899873

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=99.95  E-value=1.7e-26  Score=192.28  Aligned_cols=228  Identities=20%  Similarity=0.242  Sum_probs=175.6

Q ss_pred             cccceecccCCCcccceEEEecCCceeeCCCCC-------ChhhhhhhchHHHHHHHHHHhh-hCCCcCCCCCCCeEEEE
Q 045248            2 CNLWRIDVSHNGGGLAEFAVAKESSTVARPSEV-------SAAEGSGLPVAGLTAHQALTQS-AGVKLDGSGQQKNILVT   73 (240)
Q Consensus         2 c~~~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~-------~~~~aa~~~~~~~ta~~~l~~~-~~~~~~~~~~g~~vlV~   73 (240)
                      |..+...+...+|+|++|+.++++.++++|+++       +++ +++++..+.+||+++... .++     ++|++|+|+
T Consensus       137 ~~~~~~~g~~~~g~~~~~v~v~~~~~~~lP~~~~~~~~~~~~~-~a~~~~~~~ta~~al~~~~~~~-----~~g~~VlV~  210 (384)
T cd08265         137 CKNLKELGFSADGAFAEYIAVNARYAWEINELREIYSEDKAFE-AGALVEPTSVAYNGLFIRGGGF-----RPGAYVVVY  210 (384)
T ss_pred             CCCcceeeecCCCcceeeEEechHHeEECCccccccccCCCHH-HhhhhhHHHHHHHHHHhhcCCC-----CCCCEEEEE
Confidence            444444445558999999999999999999864       444 566667778999998655 577     899999999


Q ss_pred             cCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHHHHHhcCCCEEEeCCCC---c--cccccCCCCCcccEEEeCCCCC--C
Q 045248           74 AASGGVGHYAVQLAKLGNT-HVTASCGA-RNIEFVKSLGADEVLDYKTP---D--GAALKSPSGRKYDAVIHCATGI--P  144 (240)
Q Consensus        74 G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~~v~~~~~~---~--~~~~~~~~~~~~d~v~d~~g~~--~  144 (240)
                      | +|++|++++|+|+.+|+ +|++++++ ++.+.++++|++.++++.+.   +  ....+.+.++++|+++|++|+.  .
T Consensus       211 g-~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~~~~g~gvDvvld~~g~~~~~  289 (384)
T cd08265         211 G-AGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLSGEKVMEVTKGWGADIQVEAAGAPPAT  289 (384)
T ss_pred             C-CCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcccccccccHHHHHHHhcCCCCCCEEEECCCCcHHH
Confidence            6 79999999999999999 79988864 78888899999998876643   2  2233456677899999999964  4


Q ss_pred             ccccccCCCCCcEEEEeCCCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEE--ecCceecchhHHH
Q 045248          145 WSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKT--VINSKHPLSKAED  222 (240)
Q Consensus       145 ~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~  222 (240)
                      +..++++|+++|+++.+|.... ...+....+.++..++.+.........+++++++++++.+.+  ++++.|+++++++
T Consensus       290 ~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~g~l~~~~~~~~~~~~~~~~~  368 (384)
T cd08265         290 IPQMEKSIAINGKIVYIGRAAT-TVPLHLEVLQVRRAQIVGAQGHSGHGIFPSVIKLMASGKIDMTKIITARFPLEGIME  368 (384)
T ss_pred             HHHHHHHHHcCCEEEEECCCCC-CCcccHHHHhhCceEEEEeeccCCcchHHHHHHHHHcCCCChHHheEEEeeHHHHHH
Confidence            7788999999999999985432 122223344555667777653234557999999999999875  3667899999999


Q ss_pred             HHHHHHcCCCcccEEE
Q 045248          223 AWAESIDGHATGKIIV  238 (240)
Q Consensus       223 a~~~~~~~~~~gkvvl  238 (240)
                      |++.+.++ ..+|+|+
T Consensus       369 a~~~~~~~-~~~kvvv  383 (384)
T cd08265         369 AIKAASER-TDGKITI  383 (384)
T ss_pred             HHHHHhcC-CCceEEe
Confidence            99997665 4788875

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=99.95  E-value=1.9e-26  Score=188.16  Aligned_cols=222  Identities=21%  Similarity=0.274  Sum_probs=175.4

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g   91 (240)
                      ..|+|++|+.++++.++++|+++++++++.++..+.++|.++.....+     .++++++|+|++|.+|++++|+++.+|
T Consensus        91 ~~g~~~~~v~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~l~~~~~~-----~~g~~vlI~g~~g~ig~~~~~lak~~G  165 (327)
T PRK10754         91 ALGAYSSVHNVPADKAAILPDAISFEQAAASFLKGLTVYYLLRKTYEI-----KPDEQFLFHAAAGGVGLIACQWAKALG  165 (327)
T ss_pred             CCcceeeEEEcCHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCEEEEEeCCcHHHHHHHHHHHHcC
Confidence            458999999999999999999999999999988989999998777777     899999999989999999999999999


Q ss_pred             CEEEEEeCc-ccHHHHHhcCCCEEEeCCCCcc--ccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchHH
Q 045248           92 THVTASCGA-RNIEFVKSLGADEVLDYKTPDG--AALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAM  168 (240)
Q Consensus        92 ~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~--~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~  168 (240)
                      ++|+++++. ++.+.++++|++.+++....+.  ...+.+.+.++|+++|++|+......+++++++|+++.+|......
T Consensus       166 ~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~  245 (327)
T PRK10754        166 AKLIGTVGSAQKAQRAKKAGAWQVINYREENIVERVKEITGGKKVRVVYDSVGKDTWEASLDCLQRRGLMVSFGNASGPV  245 (327)
T ss_pred             CEEEEEeCCHHHHHHHHHCCCCEEEcCCCCcHHHHHHHHcCCCCeEEEEECCcHHHHHHHHHHhccCCEEEEEccCCCCC
Confidence            999988864 7888889999988887665442  2334566678999999999877888999999999999998543211


Q ss_pred             HHHHHhh------heeccceeeeEEEcCCH----HHHHHHHHHHHCCceEEe--cCceecchhHHHHHHHHHcCCCcccE
Q 045248          169 LTFALKK------LTFSKKQLVPLLLIPKR----ENLDFLVKLVKEGKLKTV--INSKHPLSKAEDAWAESIDGHATGKI  236 (240)
Q Consensus       169 ~~~~~~~------~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~a~~~~~~~~~~gkv  236 (240)
                      .......      .......+.+..  .+.    +.+.++++++.+|++++.  .++.|++++++++++.+.++...+|+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  323 (327)
T PRK10754        246 TGVNLGILNQKGSLYVTRPSLQGYI--TTREELTEASNELFSLIASGVIKVDVAEQQKFPLKDAQRAHEILESRATQGSS  323 (327)
T ss_pred             CCcCHHHHhccCceEEecceeeccc--CCHHHHHHHHHHHHHHHHCCCeeeecccCcEEcHHHHHHHHHHHHcCCCcceE
Confidence            1111111      111122222222  222    345678999999999853  56899999999999999999989999


Q ss_pred             EEeC
Q 045248          237 IVEP  240 (240)
Q Consensus       237 vl~~  240 (240)
                      |+.+
T Consensus       324 ~~~~  327 (327)
T PRK10754        324 LLIP  327 (327)
T ss_pred             EEeC
Confidence            9864

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.95  E-value=3.9e-26  Score=185.70  Aligned_cols=208  Identities=17%  Similarity=0.230  Sum_probs=168.3

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g   91 (240)
                      .+|+|++|++++++.++++|++++.++++++ ....+++.++ +..++     +++++|+|+| +|++|++++|+|+.+|
T Consensus       108 ~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~~~~~~-~~~~~-----~~g~~vlV~g-~g~vg~~~~q~a~~~G  179 (319)
T cd08242         108 RDGAFAEYLTLPLENLHVVPDLVPDEQAVFA-EPLAAALEIL-EQVPI-----TPGDKVAVLG-DGKLGLLIAQVLALTG  179 (319)
T ss_pred             CCCceEEEEEechHHeEECcCCCCHHHhhhh-hHHHHHHHHH-HhcCC-----CCCCEEEEEC-CCHHHHHHHHHHHHcC
Confidence            4799999999999999999999999988864 3334677666 67777     8999999998 8999999999999999


Q ss_pred             CEEEEEeC-cccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC-CccccccCCCCCcEEEEeCCCchHHH
Q 045248           92 THVTASCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTNGKVIDITPGPSAML  169 (240)
Q Consensus        92 ~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~g~~~~~~~  169 (240)
                      ++|+++++ +++.+.++++|++.++++.+.       +.+.++|+++|++|+. .+..++++++++|+++..+.... ..
T Consensus       180 ~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~~~~~~-~~  251 (319)
T cd08242         180 PDVVLVGRHSEKLALARRLGVETVLPDEAE-------SEGGGFDVVVEATGSPSGLELALRLVRPRGTVVLKSTYAG-PA  251 (319)
T ss_pred             CeEEEEcCCHHHHHHHHHcCCcEEeCcccc-------ccCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccCC-CC
Confidence            99988886 488999999999887766432       3556899999999874 58888999999999998765332 12


Q ss_pred             HHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCce--EEecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          170 TFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKL--KTVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       170 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      .+....+.+++.++.+....    .+++++++++++++  .+.+++.|+++++++||+.+.++. .+|+|+++
T Consensus       252 ~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~-~~k~vi~~  319 (319)
T cd08242         252 SFDLTKAVVNEITLVGSRCG----PFAPALRLLRKGLVDVDPLITAVYPLEEALEAFERAAEPG-ALKVLLRP  319 (319)
T ss_pred             ccCHHHheecceEEEEEecc----cHHHHHHHHHcCCCChhhceEEEEeHHHHHHHHHHHhcCC-ceEEEeCC
Confidence            33344566777777776431    28889999999998  456788999999999999998776 58999875

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.95  E-value=4.8e-26  Score=185.91  Aligned_cols=219  Identities=23%  Similarity=0.276  Sum_probs=177.5

Q ss_pred             cccceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHH
Q 045248            2 CNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGH   81 (240)
Q Consensus         2 c~~~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~   81 (240)
                      |+.+.+.+...+|+|++|+.++.+.++++|+++++.+++.+++.+.|||+++ ..+++     +++++++|+| +|++|+
T Consensus       109 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~-~~~~~-----~~~~~vlV~g-~g~vg~  181 (329)
T cd08298         109 CDNARFTGYTVDGGYAEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGYRAL-KLAGL-----KPGQRLGLYG-FGASAH  181 (329)
T ss_pred             CCCccccccccCCceEEEEEecchhEEECCCCCCHHHhhHhhhhhHHHHHHH-HhhCC-----CCCCEEEEEC-CcHHHH
Confidence            5555555555679999999999999999999999999999999999999999 88888     8999999998 899999


Q ss_pred             HHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC-CCccccccCCCCCcEEE
Q 045248           82 YAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVI  159 (240)
Q Consensus        82 ~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv  159 (240)
                      +++++++..|++|++++++ ++.+.++++|++.+++....        .++++|+++++.+. ..+..++++++++|+++
T Consensus       182 ~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v  253 (329)
T cd08298         182 LALQIARYQGAEVFAFTRSGEHQELARELGADWAGDSDDL--------PPEPLDAAIIFAPVGALVPAALRAVKKGGRVV  253 (329)
T ss_pred             HHHHHHHHCCCeEEEEcCChHHHHHHHHhCCcEEeccCcc--------CCCcccEEEEcCCcHHHHHHHHHHhhcCCEEE
Confidence            9999999999999999864 78899999999877765432        23579999998764 45889999999999999


Q ss_pred             EeCCCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEE
Q 045248          160 DITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIV  238 (240)
Q Consensus       160 ~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl  238 (240)
                      .+|.........+... ...+..+.+.. ....+.+++++++++++.+++. +++++++++++|++.+.++...||+|+
T Consensus       254 ~~g~~~~~~~~~~~~~-~~~~~~i~~~~-~~~~~~~~~~~~l~~~~~l~~~-~~~~~~~~~~~a~~~~~~~~~~~~~v~  329 (329)
T cd08298         254 LAGIHMSDIPAFDYEL-LWGEKTIRSVA-NLTRQDGEEFLKLAAEIPIKPE-VETYPLEEANEALQDLKEGRIRGAAVL  329 (329)
T ss_pred             EEcCCCCCCCccchhh-hhCceEEEEec-CCCHHHHHHHHHHHHcCCCCce-EEEEeHHHHHHHHHHHHcCCCcceeeC
Confidence            9885322111111111 23455566654 3467788999999999998874 578999999999999999988899874

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=99.94  E-value=4e-26  Score=188.84  Aligned_cols=218  Identities=22%  Similarity=0.227  Sum_probs=174.4

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      .|+|++|+.++++.++++|+++++++++.+++++.||+.++.....+     +++++|||+| +|++|++++|+|++.|+
T Consensus       138 ~g~~~~y~~v~~~~~~~iP~~~s~~~a~~l~~~~~ta~~~~~~~~~~-----~~g~~vlI~g-~g~vG~~~~~la~~~G~  211 (365)
T cd08278         138 QSSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQTGAGAVLNVLKP-----RPGSSIAVFG-AGAVGLAAVMAAKIAGC  211 (365)
T ss_pred             ccceeeEEEecchhEEECCCCCCHHHhhhhcchhhhhhHHHhhhcCC-----CCCCEEEEEC-CCHHHHHHHHHHHHcCC
Confidence            58999999999999999999999999999999999999998777777     8999999997 79999999999999999


Q ss_pred             -EEEEEeCc-ccHHHHHhcCCCEEEeCCCCc-cc-cccCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEeCCCc-h
Q 045248           93 -HVTASCGA-RNIEFVKSLGADEVLDYKTPD-GA-ALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITPGP-S  166 (240)
Q Consensus        93 -~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~-~~-~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~~~-~  166 (240)
                       ++++++++ ++.+.++++|++.++++.+.+ .. ..+.+ +.++|+++|++|+ ..+..++++++++|+++.+|... .
T Consensus       212 ~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~-~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~  290 (365)
T cd08278         212 TTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREIT-GGGVDYALDTTGVPAVIEQAVDALAPRGTLALVGAPPPG  290 (365)
T ss_pred             CeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHh-CCCCcEEEECCCCcHHHHHHHHHhccCCEEEEeCcCCCC
Confidence             67877754 788888999999998876654 22 23334 6789999999996 45889999999999999998642 1


Q ss_pred             HHHHHHHhhheeccceeeeEEEc--CCHHHHHHHHHHHHCCceEE-ecCceecchhHHHHHHHHHcCCCcccEEE
Q 045248          167 AMLTFALKKLTFSKKQLVPLLLI--PKRENLDFLVKLVKEGKLKT-VINSKHPLSKAEDAWAESIDGHATGKIIV  238 (240)
Q Consensus       167 ~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~a~~~~~~~~~~gkvvl  238 (240)
                      ....++...+..++.++.++...  ...+.+++++++++++++.. .+...++++++++|++.+.++... |+|+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~l~~~~~a~~~~~~~~~~-k~~~  364 (365)
T cd08278         291 AEVTLDVNDLLVSGKTIRGVIEGDSVPQEFIPRLIELYRQGKFPFDKLVTFYPFEDINQAIADSESGKVI-KPVL  364 (365)
T ss_pred             CccccCHHHHhhcCceEEEeecCCcChHHHHHHHHHHHHcCCCChHHheEEecHHHHHHHHHHHHCCCce-EEEE
Confidence            12233333343566666665431  12467788999999999854 244589999999999999887754 7776

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=99.94  E-value=4.8e-26  Score=187.50  Aligned_cols=216  Identities=16%  Similarity=0.218  Sum_probs=171.6

Q ss_pred             CCcccceEEEecCC-ceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhC
Q 045248           12 NGGGLAEFAVAKES-STVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLG   90 (240)
Q Consensus        12 ~~G~~~e~~~v~~~-~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~   90 (240)
                      ..|+|+||+.++++ .++++|+++++++++++ ..+.|+|+++ ...++     .++++|+|.| +|++|++++++|+.+
T Consensus       126 ~~g~~~~~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~ta~~a~-~~~~~-----~~g~~vlI~g-~g~vG~~~~~~a~~~  197 (350)
T cd08256         126 VNGGMAEYMRFPKEAIVHKVPDDIPPEDAILI-EPLACALHAV-DRANI-----KFDDVVVLAG-AGPLGLGMIGAARLK  197 (350)
T ss_pred             CCCcceeeEEcccccceEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCC-----CCCCEEEEEC-CCHHHHHHHHHHHHc
Confidence            46999999999988 57899999999999988 7778999998 77788     8999999955 899999999999999


Q ss_pred             CCE-EEEEeCc-ccHHHHHhcCCCEEEeCCCCc--cccccCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEeCCCc
Q 045248           91 NTH-VTASCGA-RNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus        91 g~~-v~~~~~~-~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~~~  165 (240)
                      |++ ++++.++ ++.+.++++|++.+++....+  ....+.+.+.++|+++|++|+ ..+..++++++++|+++.+|...
T Consensus       198 G~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~vdvvld~~g~~~~~~~~~~~l~~~G~~v~~g~~~  277 (350)
T cd08256         198 NPKKLIVLDLKDERLALARKFGADVVLNPPEVDVVEKIKELTGGYGCDIYIEATGHPSAVEQGLNMIRKLGRFVEFSVFG  277 (350)
T ss_pred             CCcEEEEEcCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEccCC
Confidence            984 5666654 778888999999888776544  223344566789999999996 45788999999999999998543


Q ss_pred             hHHHHHHHhhh-eeccceeeeEEEcCCHHHHHHHHHHHHCCceEE--ecCceecchhHHHHHHHHHcCCCcccEEE
Q 045248          166 SAMLTFALKKL-TFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKT--VINSKHPLSKAEDAWAESIDGHATGKIIV  238 (240)
Q Consensus       166 ~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvl  238 (240)
                      .. .++....+ ..++.++.++..  ....+.+++++++++.+++  .+++.++++++++|++.+.++...+|+|+
T Consensus       278 ~~-~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~kvv~  350 (350)
T cd08256         278 DP-VTVDWSIIGDRKELDVLGSHL--GPYCYPIAIDLIASGRLPTDGIVTHQFPLEDFEEAFELMARGDDSIKVVL  350 (350)
T ss_pred             CC-CccChhHhhcccccEEEEecc--CchhHHHHHHHHHcCCCChhHheEEEeEHHHHHHHHHHHHhCCCceEEeC
Confidence            21 11222222 245566766542  3457889999999999986  36789999999999999999888888874

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=99.94  E-value=3.4e-26  Score=190.51  Aligned_cols=220  Identities=21%  Similarity=0.202  Sum_probs=175.3

Q ss_pred             CcccceEEEecCC--ceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhC
Q 045248           13 GGGLAEFAVAKES--STVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLG   90 (240)
Q Consensus        13 ~G~~~e~~~v~~~--~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~   90 (240)
                      +|+|+||++++++  .++++|++++++++++++..+.|||+++ ....+     .++++|+|+| +|++|++++++|+.+
T Consensus       135 ~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~-----~~g~~VlV~g-~G~vG~~~~~la~~~  207 (386)
T cd08283         135 AGGQAEYVRVPFADVGPFKIPDDLSDEKALFLSDILPTGYHAA-ELAEV-----KPGDTVAVWG-CGPVGLFAARSAKLL  207 (386)
T ss_pred             CCeeEEEEEcccccCeEEECCCCCCHHHHhhhccchhhhHHHH-hhccC-----CCCCEEEEEC-CCHHHHHHHHHHHHc
Confidence            6999999999988  8999999999999999999999999999 77877     8999999997 799999999999999


Q ss_pred             CC-EEEEEeC-cccHHHHHhcCCCEEEeCCCCc--cc-cccCCCCCcccEEEeCCCCC----------------------
Q 045248           91 NT-HVTASCG-ARNIEFVKSLGADEVLDYKTPD--GA-ALKSPSGRKYDAVIHCATGI----------------------  143 (240)
Q Consensus        91 g~-~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~--~~-~~~~~~~~~~d~v~d~~g~~----------------------  143 (240)
                      |+ +|+++++ +++.+.+++++...++++...+  .. ....+.++++|++||++|++                      
T Consensus       208 g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~  287 (386)
T cd08283         208 GAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPD  287 (386)
T ss_pred             CCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEECCCCcccccccccccccccccccCchH
Confidence            98 6988886 4788999988544677766542  22 22445556899999999853                      


Q ss_pred             CccccccCCCCCcEEEEeCCCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEE--ecCceecchhHH
Q 045248          144 PWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKT--VINSKHPLSKAE  221 (240)
Q Consensus       144 ~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~  221 (240)
                      .+..++++++++|+++.+|................++.++.+... ...+.+++++++++++++.+  ++++.+++++++
T Consensus       288 ~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~l~~g~l~~~~~~~~~~~l~~~~  366 (386)
T cd08283         288 ALREAIQAVRKGGTVSIIGVYGGTVNKFPIGAAMNKGLTLRMGQT-HVQRYLPRLLELIESGELDPSFIITHRLPLEDAP  366 (386)
T ss_pred             HHHHHHHHhccCCEEEEEcCCCCCcCccCHHHHHhCCcEEEeccC-CchHHHHHHHHHHHcCCCChhHceEEEecHHHHH
Confidence            367788999999999999864332222222233455666666542 34677999999999999886  466789999999


Q ss_pred             HHHHHHHcCC-CcccEEEeC
Q 045248          222 DAWAESIDGH-ATGKIIVEP  240 (240)
Q Consensus       222 ~a~~~~~~~~-~~gkvvl~~  240 (240)
                      +|++.+.++. ..+|+|+++
T Consensus       367 ~a~~~~~~~~~~~~k~~~~~  386 (386)
T cd08283         367 EAYKIFDKKEDGCIKVVLKP  386 (386)
T ss_pred             HHHHHHHhCCCCeEEEEecC
Confidence            9999998876 468999875

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=99.94  E-value=6.4e-26  Score=185.81  Aligned_cols=218  Identities=21%  Similarity=0.305  Sum_probs=174.7

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g   91 (240)
                      ..|+|++|+.++++ ++++|+++++++++++ ..+.++++++ ...++     .++++|||+| +|++|.+++|+|+.+|
T Consensus       113 ~~g~~~~~v~v~~~-~~~~p~~~~~~~aa~~-~~~~~a~~~~-~~~~l-----~~g~~vLI~g-~g~vG~~a~~lA~~~g  183 (337)
T cd08261         113 RDGGFAEYIVVPAD-ALLVPEGLSLDQAALV-EPLAIGAHAV-RRAGV-----TAGDTVLVVG-AGPIGLGVIQVAKARG  183 (337)
T ss_pred             CCCcceeEEEechh-eEECCCCCCHHHhhhh-chHHHHHHHH-HhcCC-----CCCCEEEEEC-CCHHHHHHHHHHHHcC
Confidence            47999999999999 9999999999999877 4567888887 77777     8999999997 7999999999999999


Q ss_pred             CEEEEEeC-cccHHHHHhcCCCEEEeCCCCc-cc-cccCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEeCCCchH
Q 045248           92 THVTASCG-ARNIEFVKSLGADEVLDYKTPD-GA-ALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITPGPSA  167 (240)
Q Consensus        92 ~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~-~~-~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~~~~~  167 (240)
                      ++|+++.+ +++.+.++++|+++++++.+.+ .. ..+.+.+.++|+++|++|+ ..+..++++++++|+++.++.....
T Consensus       184 ~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~i~~g~~~~~  263 (337)
T cd08261         184 ARVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDATGNPASMEEAVELVAHGGRVVLVGLSKGP  263 (337)
T ss_pred             CeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEcCCCCC
Confidence            99998875 4788888999999999877654 22 2344556779999999986 4578899999999999998854321


Q ss_pred             HHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEE--ecCceecchhHHHHHHHHHcC-CCcccEEEeC
Q 045248          168 MLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKT--VINSKHPLSKAEDAWAESIDG-HATGKIIVEP  240 (240)
Q Consensus       168 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~a~~~~~~~-~~~gkvvl~~  240 (240)
                       .......+..++.++.+.. ....+.+++++++++++.+++  .+...+++++++++++.+.++ ...+|+|+++
T Consensus       264 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~v~~~  337 (337)
T cd08261         264 -VTFPDPEFHKKELTILGSR-NATREDFPDVIDLLESGKVDPEALITHRFPFEDVPEAFDLWEAPPGGVIKVLIEF  337 (337)
T ss_pred             -CccCHHHHHhCCCEEEEec-cCChhhHHHHHHHHHcCCCChhhheEEEeeHHHHHHHHHHHhcCCCceEEEEEeC
Confidence             1122223334455555543 345678999999999999987  677789999999999999988 4778999864

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=99.94  E-value=5.5e-26  Score=186.66  Aligned_cols=218  Identities=20%  Similarity=0.212  Sum_probs=173.5

Q ss_pred             CcccceEEEecCC--ceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhC
Q 045248           13 GGGLAEFAVAKES--STVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLG   90 (240)
Q Consensus        13 ~G~~~e~~~v~~~--~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~   90 (240)
                      +|+|++|+.++++  .++++|++++++++++++..+.|||+++ ....+     .++++|+|+| +|++|++++|+|+.+
T Consensus       118 ~g~~~~~~~v~~~~~~~~~~p~~l~~~~a~~l~~~~~ta~~~~-~~~~~-----~~~~~vlI~g-~g~vg~~~~~~a~~~  190 (344)
T cd08284         118 DGAQAEYVRVPFADGTLLKLPDGLSDEAALLLGDILPTGYFGA-KRAQV-----RPGDTVAVIG-CGPVGLCAVLSAQVL  190 (344)
T ss_pred             CCceeEEEEcccccCceEECCCCCCHHHhhhhcCchHHHHhhh-HhcCC-----ccCCEEEEEC-CcHHHHHHHHHHHHc
Confidence            6999999999975  9999999999999999999999999999 45666     7899999997 899999999999999


Q ss_pred             CC-EEEEEeCc-ccHHHHHhcCCCEEEeCCCCc-c-ccccCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEeCCCc
Q 045248           91 NT-HVTASCGA-RNIEFVKSLGADEVLDYKTPD-G-AALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus        91 g~-~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~-~-~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~~~  165 (240)
                      |+ +|+++++. ++.+.++++|+. +++....+ . ...+.+.++++|++||++|+ ..+..++++++++|+++.+|...
T Consensus       191 g~~~v~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~l~~~~~~~~~dvvid~~~~~~~~~~~~~~l~~~g~~v~~g~~~  269 (344)
T cd08284         191 GAARVFAVDPVPERLERAAALGAE-PINFEDAEPVERVREATEGRGADVVLEAVGGAAALDLAFDLVRPGGVISSVGVHT  269 (344)
T ss_pred             CCceEEEEcCCHHHHHHHHHhCCe-EEecCCcCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEECcCC
Confidence            97 89988754 778888999975 45555443 2 22344566789999999996 45888999999999999998654


Q ss_pred             hHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEE--ecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          166 SAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKT--VINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       166 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      .............++.++.... ....+.++++++++.++++.+  ++++++++++++++++.+.++.. +|+|+++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~Vi~~  344 (344)
T cd08284         270 AEEFPFPGLDAYNKNLTLRFGR-CPVRSLFPELLPLLESGRLDLEFLIDHRMPLEEAPEAYRLFDKRKV-LKVVLDP  344 (344)
T ss_pred             CCCccccHHHHhhcCcEEEEec-CCcchhHHHHHHHHHcCCCChHHhEeeeecHHHHHHHHHHHhcCCc-eEEEecC
Confidence            2222222223334555555432 356778999999999999875  46788999999999999988877 9999864

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=99.94  E-value=2e-26  Score=187.80  Aligned_cols=221  Identities=30%  Similarity=0.404  Sum_probs=172.9

Q ss_pred             cccceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHH
Q 045248            2 CNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGH   81 (240)
Q Consensus         2 c~~~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~   81 (240)
                      |..+.+.+....|+|++|+.++++.++++|+++++++++.+++.+.+||+++. ..++     +++++++|+|++|++|+
T Consensus       104 ~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~-~~~~-----~~g~~vlI~g~~g~vg~  177 (325)
T cd08264         104 CRNGGIIGVVSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHALK-TAGL-----GPGETVVVFGASGNTGI  177 (325)
T ss_pred             cCccceeeccCCCceeeEEEcCHHHceeCCCCCCHHHhhhhhhhhHHHHHHHH-hcCC-----CCCCEEEEECCCchHHH
Confidence            33333334445799999999999999999999999999999999999999984 4777     89999999998899999


Q ss_pred             HHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEe
Q 045248           82 YAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDI  161 (240)
Q Consensus        82 ~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~  161 (240)
                      +++++|+.+|++|+++++   .+.++++|++.+++..+. ...+.... +++|+++|++|+..+..++++++++|+++.+
T Consensus       178 ~~~~~a~~~G~~v~~~~~---~~~~~~~g~~~~~~~~~~-~~~l~~~~-~~~d~vl~~~g~~~~~~~~~~l~~~g~~v~~  252 (325)
T cd08264         178 FAVQLAKMMGAEVIAVSR---KDWLKEFGADEVVDYDEV-EEKVKEIT-KMADVVINSLGSSFWDLSLSVLGRGGRLVTF  252 (325)
T ss_pred             HHHHHHHHcCCeEEEEeH---HHHHHHhCCCeeecchHH-HHHHHHHh-CCCCEEEECCCHHHHHHHHHhhccCCEEEEE
Confidence            999999999999888863   377788999888876432 12222122 6799999999987788999999999999999


Q ss_pred             CCCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccE
Q 045248          162 TPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKI  236 (240)
Q Consensus       162 g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkv  236 (240)
                      |.........+...+..++.++.+.. ...++.++++++++...+  ..+++.|+++++++|++.+.++...+|+
T Consensus       253 g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~kv  324 (325)
T cd08264         253 GTLTGGEVKLDLSDLYSKQISIIGST-GGTRKELLELVKIAKDLK--VKVWKTFKLEEAKEALKELFSKERDGRI  324 (325)
T ss_pred             ecCCCCCCccCHHHHhhcCcEEEEcc-CCCHHHHHHHHHHHHcCC--ceeEEEEcHHHHHHHHHHHHcCCCcccc
Confidence            85322123333444555666677754 356788999999996544  4466789999999999999988777775

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=99.94  E-value=4.1e-26  Score=187.06  Aligned_cols=227  Identities=28%  Similarity=0.391  Sum_probs=174.7

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcC-----CCCCCCeEEEEcCCchHHHHHHHH
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLD-----GSGQQKNILVTAASGGVGHYAVQL   86 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~-----~~~~g~~vlV~G~~g~vG~~~~~~   86 (240)
                      .+|+|++|+.++.+.++++|+++++++++.+++.+.|||+++....++..+     ...++++++|+|++|++|++++++
T Consensus        95 ~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~  174 (339)
T cd08249          95 RNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQL  174 (339)
T ss_pred             CCCcccceEEechhheEECCCCCCHHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHH
Confidence            369999999999999999999999999999999999999998665433100     015789999999889999999999


Q ss_pred             HHhCCCEEEEEeCcccHHHHHhcCCCEEEeCCCCc-cccccCCCCCcccEEEeCCCC-CCccccccCCCC--CcEEEEeC
Q 045248           87 AKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCATG-IPWSTFEPNLGT--NGKVIDIT  162 (240)
Q Consensus        87 a~~~g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~--~G~iv~~g  162 (240)
                      |+.+|++|++++++++.+.++++|++++++..+.+ ...+....++++|+++|++|+ ..+..+++++++  +|+++.+|
T Consensus       175 a~~~G~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~g~~v~~g  254 (339)
T cd08249         175 AKLAGYKVITTASPKNFDLVKSLGADAVFDYHDPDVVEDIRAATGGKLRYALDCISTPESAQLCAEALGRSGGGKLVSLL  254 (339)
T ss_pred             HHHcCCeEEEEECcccHHHHHhcCCCEEEECCCchHHHHHHHhcCCCeeEEEEeeccchHHHHHHHHHhccCCCEEEEec
Confidence            99999999988877889999999999999876554 222333344789999999998 678999999999  99999998


Q ss_pred             CCchHHHHHHHhhheeccceeeeEE------EcCCHHHHHHHHHHHHCCceEEecCceec--chhHHHHHHHHHcCC-Cc
Q 045248          163 PGPSAMLTFALKKLTFSKKQLVPLL------LIPKRENLDFLVKLVKEGKLKTVINSKHP--LSKAEDAWAESIDGH-AT  233 (240)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~i~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~a~~~~~~~~-~~  233 (240)
                      ......  .................      .......+..++++++++++.+.....++  ++++++|++.+.+++ ..
T Consensus       255 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  332 (339)
T cd08249         255 PVPEET--EPRKGVKVKFVLGYTVFGEIPEDREFGEVFWKYLPELLEEGKLKPHPVRVVEGGLEGVQEGLDLLRKGKVSG  332 (339)
T ss_pred             CCCccc--cCCCCceEEEEEeeeecccccccccchHHHHHHHHHHHHcCCccCCCceecCCcHHHHHHHHHHHHCCCccc
Confidence            654322  01111222211111110      01123567889999999999876556677  999999999999888 88


Q ss_pred             ccEEEeC
Q 045248          234 GKIIVEP  240 (240)
Q Consensus       234 gkvvl~~  240 (240)
                      +|+|+++
T Consensus       333 ~kvvv~~  339 (339)
T cd08249         333 EKLVVRL  339 (339)
T ss_pred             eEEEEeC
Confidence            9999874

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.94  E-value=4e-25  Score=182.16  Aligned_cols=223  Identities=26%  Similarity=0.422  Sum_probs=173.7

Q ss_pred             CcccceEEEecCC----ceeeCCCCCChhhhhhhchHHHHHHHHHHhhh-CCCcCCCCCCCeEEEEcCCchHHHHHHHHH
Q 045248           13 GGGLAEFAVAKES----STVARPSEVSAAEGSGLPVAGLTAHQALTQSA-GVKLDGSGQQKNILVTAASGGVGHYAVQLA   87 (240)
Q Consensus        13 ~G~~~e~~~v~~~----~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~-~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a   87 (240)
                      .|+|++|+++++.    .++++|+++++++++.++..+.|||+++.... .+     ++|++++|+|++|++|++++|+|
T Consensus        98 ~g~~~~~~~v~~~~~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~-----~~g~~vlI~ga~~~vg~~~~~~a  172 (352)
T cd08247          98 QGTLSQYLLVDPKKDKKSITRKPENISLEEAAAWPLVLGTAYQILEDLGQKL-----GPDSKVLVLGGSTSVGRFAIQLA  172 (352)
T ss_pred             CceeeEEEEEccccccceeEECCCCCCHHHHHHhHHHHHHHHHHHHHhhhcc-----CCCCeEEEECCCchHHHHHHHHH
Confidence            6999999999997    78999999999999999999999999996665 67     89999999998899999999999


Q ss_pred             HhC-CC-EEEEEeCcccHHHHHhcCCCEEEeCCCCc-----cccccCCC-CCcccEEEeCCCC-CCccccccCCC---CC
Q 045248           88 KLG-NT-HVTASCGARNIEFVKSLGADEVLDYKTPD-----GAALKSPS-GRKYDAVIHCATG-IPWSTFEPNLG---TN  155 (240)
Q Consensus        88 ~~~-g~-~v~~~~~~~~~~~~~~~g~~~v~~~~~~~-----~~~~~~~~-~~~~d~v~d~~g~-~~~~~~~~~l~---~~  155 (240)
                      +.+ |. +++++.++++.+.++++|++.+++..+.+     ...++... ++++|++|||+|+ .....++++++   ++
T Consensus       173 ~~~~~~~~v~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~~  252 (352)
T cd08247         173 KNHYNIGTVVGTCSSRSAELNKKLGADHFIDYDAHSGVKLLKPVLENVKGQGKFDLILDCVGGYDLFPHINSILKPKSKN  252 (352)
T ss_pred             HhcCCcceEEEEeChhHHHHHHHhCCCEEEecCCCcccchHHHHHHhhcCCCCceEEEECCCCHHHHHHHHHHhCccCCC
Confidence            987 55 67777766666788999999888865543     12233333 6789999999998 55778899999   99


Q ss_pred             cEEEEeCCCchHH-H--------------HHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhH
Q 045248          156 GKVIDITPGPSAM-L--------------TFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKA  220 (240)
Q Consensus       156 G~iv~~g~~~~~~-~--------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  220 (240)
                      |+++.++...... .              ........+...++......+..+.++++++++.++.+++.+++.++++++
T Consensus       253 G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~  332 (352)
T cd08247         253 GHYVTIVGDYKANYKKDTFNSWDNPSANARKLFGSLGLWSYNYQFFLLDPNADWIEKCAELIADGKVKPPIDSVYPFEDY  332 (352)
T ss_pred             CEEEEEeCCCcccccchhhhhccccchhhhhhhhhhcCCCcceEEEEecCCHHHHHHHHHHHhCCCeEeeeccEecHHHH
Confidence            9999764221100 0              011123334444444332223456788999999999999888889999999


Q ss_pred             HHHHHHHHcCCCcccEEEeC
Q 045248          221 EDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       221 ~~a~~~~~~~~~~gkvvl~~  240 (240)
                      +++++.+.+++..||+|+++
T Consensus       333 ~~a~~~~~~~~~~gkvvi~~  352 (352)
T cd08247         333 KEAFERLKSNRAKGKVVIKV  352 (352)
T ss_pred             HHHHHHHHcCCCCCcEEEeC
Confidence            99999999988889999864

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=99.94  E-value=3.9e-26  Score=187.74  Aligned_cols=221  Identities=20%  Similarity=0.239  Sum_probs=174.9

Q ss_pred             CCcccceEEEecCC--ceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHh
Q 045248           12 NGGGLAEFAVAKES--STVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKL   89 (240)
Q Consensus        12 ~~G~~~e~~~v~~~--~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~   89 (240)
                      .+|+|++|++++++  .++++|++++++++++++..+.|||+++ ...++     +++++|||.| +|++|++++|+|+.
T Consensus       117 ~~g~~~~~~~v~~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~-~~~~~-----~~~~~VlI~g-~g~vg~~~iqlak~  189 (347)
T cd05278         117 IDGGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILPTGFHGA-ELAGI-----KPGSTVAVIG-AGPVGLCAVAGARL  189 (347)
T ss_pred             CCCeeeEEEEecchhCeEEECCCCCCHHHHhhhcchhhheeehh-hhcCC-----CCCCEEEEEC-CCHHHHHHHHHHHH
Confidence            46999999999997  8999999999999999999999999998 66777     8999999987 79999999999999


Q ss_pred             CCC-EEEEEeCc-ccHHHHHhcCCCEEEeCCCCcc-c-cccCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEeCCC
Q 045248           90 GNT-HVTASCGA-RNIEFVKSLGADEVLDYKTPDG-A-ALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus        90 ~g~-~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~-~-~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      +|+ +++++.++ ++.+.++++|++.++++.+.+. . ....+.++++|+++|++|+ ..+..++++++++|+++.+|..
T Consensus       190 ~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~  269 (347)
T cd05278         190 LGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEAVGFEETFEQAVKVVRPGGTIANVGVY  269 (347)
T ss_pred             cCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEEccCCHHHHHHHHHHhhcCCEEEEEcCC
Confidence            997 88888754 6788889999999988766542 2 2234555789999999997 5688899999999999999854


Q ss_pred             chHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEe--cCceecchhHHHHHHHHHcCCC-cccEEEeC
Q 045248          165 PSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTV--INSKHPLSKAEDAWAESIDGHA-TGKIIVEP  240 (240)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~a~~~~~~~~~-~gkvvl~~  240 (240)
                      ..............++.++.+... +..+.+++++++++++.+++.  +...+++++++++++.+..+.. .+|+|+++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vv~~  347 (347)
T cd05278         270 GKPDPLPLLGEWFGKNLTFKTGLV-PVRARMPELLDLIEEGKIDPSKLITHRFPLDDILKAYRLFDNKPDGCIKVVIRP  347 (347)
T ss_pred             CCCcccCccchhhhceeEEEeecc-CchhHHHHHHHHHHcCCCChhHcEEEEecHHHHHHHHHHHhcCCCCceEEEecC
Confidence            322100011111234555555432 446789999999999998863  4578999999999999988776 67999875

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=99.94  E-value=7.2e-26  Score=185.81  Aligned_cols=228  Identities=16%  Similarity=0.229  Sum_probs=172.6

Q ss_pred             cccceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHH
Q 045248            2 CNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGH   81 (240)
Q Consensus         2 c~~~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~   81 (240)
                      |++....+...+|+|++|+.++++.++++|+++++++++++ ..+.+++++...  ..     .+|++|+|.| +|++|+
T Consensus       107 ~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~l~~~~~~~~-~~~~~~~~~~~~--~~-----~~g~~vlV~~-~g~vg~  177 (341)
T PRK05396        107 CRNTKGVGVNRPGAFAEYLVIPAFNVWKIPDDIPDDLAAIF-DPFGNAVHTALS--FD-----LVGEDVLITG-AGPIGI  177 (341)
T ss_pred             CCCcceeeecCCCcceeeEEechHHeEECcCCCCHHHhHhh-hHHHHHHHHHHc--CC-----CCCCeEEEEC-CCHHHH
Confidence            44433334445799999999999999999999999888754 344455555422  23     5899999987 799999


Q ss_pred             HHHHHHHhCCC-EEEEEeCc-ccHHHHHhcCCCEEEeCCCCc-cccc-cCCCCCcccEEEeCCCC-CCccccccCCCCCc
Q 045248           82 YAVQLAKLGNT-HVTASCGA-RNIEFVKSLGADEVLDYKTPD-GAAL-KSPSGRKYDAVIHCATG-IPWSTFEPNLGTNG  156 (240)
Q Consensus        82 ~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~-~~~~-~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G  156 (240)
                      +++|+|+++|+ +|+++.++ ++.+.++++|++.++++++.+ ...+ +.+.+.++|++|||+|+ ..+..++++++++|
T Consensus       178 ~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G  257 (341)
T PRK05396        178 MAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAKEDLRDVMAELGMTEGFDVGLEMSGAPSAFRQMLDNMNHGG  257 (341)
T ss_pred             HHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHHhcCC
Confidence            99999999999 67777654 678888999999998876654 2222 34556789999999987 44788999999999


Q ss_pred             EEEEeCCCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCC-ceEEecCceecchhHHHHHHHHHcCCCccc
Q 045248          157 KVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEG-KLKTVINSKHPLSKAEDAWAESIDGHATGK  235 (240)
Q Consensus       157 ~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~a~~~~~~~~~~gk  235 (240)
                      +++.+|..+.. ..+....+.+++.++.++......+.+..++++++++ ++.+.+.+.++++++++||+.+..+. .||
T Consensus       258 ~~v~~g~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~-~gk  335 (341)
T PRK05396        258 RIAMLGIPPGD-MAIDWNKVIFKGLTIKGIYGREMFETWYKMSALLQSGLDLSPIITHRFPIDDFQKGFEAMRSGQ-SGK  335 (341)
T ss_pred             EEEEEecCCCC-CcccHHHHhhcceEEEEEEccCccchHHHHHHHHHcCCChhHheEEEEeHHHHHHHHHHHhcCC-Cce
Confidence            99999864321 2223455667777777764322344566788999988 45556778899999999999998877 799


Q ss_pred             EEEeC
Q 045248          236 IIVEP  240 (240)
Q Consensus       236 vvl~~  240 (240)
                      +|+++
T Consensus       336 ~vv~~  340 (341)
T PRK05396        336 VILDW  340 (341)
T ss_pred             EEEec
Confidence            99864

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.94  E-value=1.7e-25  Score=181.24  Aligned_cols=223  Identities=28%  Similarity=0.372  Sum_probs=177.0

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      .|++++|+.++++.++++|++++..+++.++..+.++++++....++     .++++|+|+|++|++|++++++++.+|+
T Consensus        88 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~-----~~g~~vlI~g~~g~~g~~~~~~a~~~g~  162 (320)
T cd05286          88 PGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPV-----KPGDTVLVHAAAGGVGLLLTQWAKALGA  162 (320)
T ss_pred             CCceeEEEEecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcCC-----CCCCEEEEEcCCchHHHHHHHHHHHcCC
Confidence            68999999999999999999999999999989999999999777877     8999999999999999999999999999


Q ss_pred             EEEEEeCc-ccHHHHHhcCCCEEEeCCCCc--cccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchHHH
Q 045248           93 HVTASCGA-RNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAML  169 (240)
Q Consensus        93 ~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~  169 (240)
                      +|++++++ ++.+.++++|++.+++..+.+  ......+.+.++|+++||+|+.....++++++++|+++.+|.......
T Consensus       163 ~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~  242 (320)
T cd05286         163 TVIGTVSSEEKAELARAAGADHVINYRDEDFVERVREITGGRGVDVVYDGVGKDTFEGSLDSLRPRGTLVSFGNASGPVP  242 (320)
T ss_pred             EEEEEcCCHHHHHHHHHCCCCEEEeCCchhHHHHHHHHcCCCCeeEEEECCCcHhHHHHHHhhccCcEEEEEecCCCCCC
Confidence            99998864 788888999998888765533  223344556789999999998778889999999999999985432111


Q ss_pred             HHHHhhheeccceeeeEEE---cCC----HHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          170 TFALKKLTFSKKQLVPLLL---IPK----RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       170 ~~~~~~~~~~~~~i~~~~~---~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      .+....+..++.++.+...   ...    .+.+.++++++.++.+.+..++.|++++++++++.+..+...+|+|+.|
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~~  320 (320)
T cd05286         243 PFDLLRLSKGSLFLTRPSLFHYIATREELLARAAELFDAVASGKLKVEIGKRYPLADAAQAHRDLESRKTTGKLLLIP  320 (320)
T ss_pred             ccCHHHHHhcCcEEEEEehhhhcCCHHHHHHHHHHHHHHHHCCCCcCcccceEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            1111111133333332211   112    2345678899999998877778999999999999999888889999875

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.94  E-value=8.2e-26  Score=184.49  Aligned_cols=219  Identities=26%  Similarity=0.313  Sum_probs=173.5

Q ss_pred             cccceEEEecC-CceeeCCCCCC--hhhhhh-hchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHh
Q 045248           14 GGLAEFAVAKE-SSTVARPSEVS--AAEGSG-LPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKL   89 (240)
Q Consensus        14 G~~~e~~~v~~-~~~~~ip~~~~--~~~aa~-~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~   89 (240)
                      |+|++|+.+++ +.++++|++++  +.++++ +++.+.|||+++.....+     .++++|||+|++|++|++++|+++.
T Consensus        94 ~~~~~~~~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~-----~~~~~vlI~g~~g~ig~~~~~~a~~  168 (329)
T cd05288          94 LGWQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKP-----KPGETVVVSAAAGAVGSVVGQIAKL  168 (329)
T ss_pred             cceEEEEEecchhhcEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCC-----CCCCEEEEecCcchHHHHHHHHHHH
Confidence            48999999999 99999999985  555555 888899999999777777     7899999999999999999999999


Q ss_pred             CCCEEEEEeCc-ccHHHHHh-cCCCEEEeCCCCc-cccc-cCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCc
Q 045248           90 GNTHVTASCGA-RNIEFVKS-LGADEVLDYKTPD-GAAL-KSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus        90 ~g~~v~~~~~~-~~~~~~~~-~g~~~v~~~~~~~-~~~~-~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~  165 (240)
                      .|++|++++++ ++.+.+++ +|++.++++.+.+ ...+ +.. ++++|+++|++|+..+..++++++++|+++.+|...
T Consensus       169 ~G~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~-~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~  247 (329)
T cd05288         169 LGARVVGIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKEAA-PDGIDVYFDNVGGEILDAALTLLNKGGRIALCGAIS  247 (329)
T ss_pred             cCCEEEEEeCCHHHHHHHHhhcCCceEEecCChhHHHHHHHhc-cCCceEEEEcchHHHHHHHHHhcCCCceEEEEeecc
Confidence            99999999865 78888887 9999888876644 2222 333 468999999999877889999999999999998543


Q ss_pred             hHHHH-----HHHhhheeccceeeeEEEcCC----HHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccE
Q 045248          166 SAMLT-----FALKKLTFSKKQLVPLLLIPK----RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKI  236 (240)
Q Consensus       166 ~~~~~-----~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkv  236 (240)
                      .....     .+......++.++.+......    .+.+.+++++++++.+++.....+++++++++++.+.++...||+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkv  327 (329)
T cd05288         248 QYNATEPPGPKNLGNIITKRLTMQGFIVSDYADRFPEALAELAKWLAEGKLKYREDVVEGLENAPEAFLGLFTGKNTGKL  327 (329)
T ss_pred             CcccccccccccHHHHhhCcceEEeecchhhHHHHHHHHHHHHHHHHCCCccccccccccHHHHHHHHHHHhcCCCccce
Confidence            21110     112333456666666543222    356788999999999987666678999999999999988888888


Q ss_pred             EE
Q 045248          237 IV  238 (240)
Q Consensus       237 vl  238 (240)
                      |+
T Consensus       328 vv  329 (329)
T cd05288         328 VV  329 (329)
T ss_pred             eC
Confidence            74

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=99.94  E-value=1.1e-25  Score=186.14  Aligned_cols=220  Identities=21%  Similarity=0.305  Sum_probs=176.9

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g   91 (240)
                      ..|+|++|+.++++.++++|+++++++++++++++.+||.++....++     .++++|||+| +|++|++++++|+..|
T Consensus       133 ~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~~~~~~~~-----~~g~~vLI~g-~g~vG~a~i~lak~~G  206 (363)
T cd08279         133 GLGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGVGAVVNTARV-----RPGDTVAVIG-CGGVGLNAIQGARIAG  206 (363)
T ss_pred             cCccceeeEEeccccEEECCCCCChHHeehhcchhHHHHHHHHhccCC-----CCCCEEEEEC-CCHHHHHHHHHHHHcC
Confidence            469999999999999999999999999999999999999998788888     8999999996 7999999999999999


Q ss_pred             CE-EEEEeCc-ccHHHHHhcCCCEEEeCCCCc-cc-cccCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEeCCCch
Q 045248           92 TH-VTASCGA-RNIEFVKSLGADEVLDYKTPD-GA-ALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITPGPS  166 (240)
Q Consensus        92 ~~-v~~~~~~-~~~~~~~~~g~~~v~~~~~~~-~~-~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~~~~  166 (240)
                      ++ |+++.++ ++.+.++++|++++++....+ .. ..+...+.++|+++|++|+ ..+..++++++++|+++.++....
T Consensus       207 ~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~~~~~~~~l~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~G~~v~~g~~~~  286 (363)
T cd08279         207 ASRIIAVDPVPEKLELARRFGATHTVNASEDDAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKGGTAVVVGMGPP  286 (363)
T ss_pred             CCcEEEEcCCHHHHHHHHHhCCeEEeCCCCccHHHHHHHHcCCCCCCEEEEcCCChHHHHHHHHHhhcCCeEEEEecCCC
Confidence            95 8888864 788888999998888876544 22 2234446789999999995 457889999999999999985432


Q ss_pred             -HHHHHHHhhheeccceeeeEEEc--CCHHHHHHHHHHHHCCceEE--ecCceecchhHHHHHHHHHcCCCcccEE
Q 045248          167 -AMLTFALKKLTFSKKQLVPLLLI--PKRENLDFLVKLVKEGKLKT--VINSKHPLSKAEDAWAESIDGHATGKII  237 (240)
Q Consensus       167 -~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvv  237 (240)
                       ....+....+..++..+.++++.  ...+.+++++++++++.+.+  .++++++++++++|++.+.+++..+.++
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  362 (363)
T cd08279         287 GETVSLPALELFLSEKRLQGSLYGSANPRRDIPRLLDLYRAGRLKLDELVTRRYSLDEINEAFADMLAGENARGVI  362 (363)
T ss_pred             CcccccCHHHHhhcCcEEEEEEecCcCcHHHHHHHHHHHHcCCCCcceeEEEEEcHHHHHHHHHHHhcCCceeEEe
Confidence             22223333344456666665442  34678999999999999875  4678899999999999999888664444

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=99.94  E-value=1.5e-25  Score=185.89  Aligned_cols=220  Identities=15%  Similarity=0.133  Sum_probs=170.1

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g   91 (240)
                      ..|+|+||++++++.++++|+++++++++++++++.+||+++....++     +++++|+|+| +|++|++++++|+.+|
T Consensus       141 ~~G~~~e~~~v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~~-----~~g~~VlV~G-~g~vG~~~~~~a~~~G  214 (373)
T cd08299         141 GTSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTGYGAAVNTAKV-----TPGSTCAVFG-LGGVGLSAIMGCKAAG  214 (373)
T ss_pred             CCCcccceEEecccceeeCCCCCChHHhheeccchHHHHHHHHhccCC-----CCCCEEEEEC-CCHHHHHHHHHHHHcC
Confidence            368999999999999999999999999999999999999998777888     8999999997 8999999999999999


Q ss_pred             C-EEEEEeCc-ccHHHHHhcCCCEEEeCCCCc---cccc-cCCCCCcccEEEeCCCCC-CccccccCC-CCCcEEEEeCC
Q 045248           92 T-HVTASCGA-RNIEFVKSLGADEVLDYKTPD---GAAL-KSPSGRKYDAVIHCATGI-PWSTFEPNL-GTNGKVIDITP  163 (240)
Q Consensus        92 ~-~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~---~~~~-~~~~~~~~d~v~d~~g~~-~~~~~~~~l-~~~G~iv~~g~  163 (240)
                      + +|++++++ ++++.++++|++.+++..+.+   ...+ +.+. +++|+++|++|++ .+..++..+ +++|+++.+|.
T Consensus       215 ~~~Vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~-~~~d~vld~~g~~~~~~~~~~~~~~~~G~~v~~g~  293 (373)
T cd08299         215 ASRIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLTEMTD-GGVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGV  293 (373)
T ss_pred             CCeEEEEcCCHHHHHHHHHcCCceEecccccchhHHHHHHHHhC-CCCeEEEECCCCcHHHHHHHHhhccCCCEEEEEcc
Confidence            9 89999864 889999999999998865432   1222 2233 5799999999964 466656654 67899999986


Q ss_pred             CchH-HHHHHHhhheeccceeeeEEEc--CCHHHHHHHHHHHHCCce--EEecCceecchhHHHHHHHHHcCCCcccEEE
Q 045248          164 GPSA-MLTFALKKLTFSKKQLVPLLLI--PKRENLDFLVKLVKEGKL--KTVINSKHPLSKAEDAWAESIDGHATGKIIV  238 (240)
Q Consensus       164 ~~~~-~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl  238 (240)
                      .... ..++....+ .++.++.+++..  .+.+.+.++++.+.++.+  ++.+++.|+++++++||+.+.+++. .|+++
T Consensus       294 ~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~a~~~~~~~~~-~k~~~  371 (373)
T cd08299         294 PPSSQNLSINPMLL-LTGRTWKGAVFGGWKSKDSVPKLVADYMAKKFNLDPLITHTLPFEKINEGFDLLRSGKS-IRTVL  371 (373)
T ss_pred             CCCCceeecCHHHH-hcCCeEEEEEecCCccHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCc-ceEEE
Confidence            4321 222222112 345567776542  234677788888887754  3467789999999999999887764 47777


Q ss_pred             eC
Q 045248          239 EP  240 (240)
Q Consensus       239 ~~  240 (240)
                      ++
T Consensus       372 ~~  373 (373)
T cd08299         372 TF  373 (373)
T ss_pred             eC
Confidence            53

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=99.94  E-value=1.8e-25  Score=183.77  Aligned_cols=220  Identities=20%  Similarity=0.244  Sum_probs=175.1

Q ss_pred             CCcccceEEEecCC--ceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHh
Q 045248           12 NGGGLAEFAVAKES--STVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKL   89 (240)
Q Consensus        12 ~~G~~~e~~~v~~~--~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~   89 (240)
                      .+|+|++|+.++++  .++++|++++..+++.++..+.+||.++....++     .+++++||+| +|++|.+++|+|+.
T Consensus       115 ~~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~-----~~g~~vlI~g-~g~~g~~~~~~a~~  188 (345)
T cd08286         115 IDGTQAEYVRIPHADNSLYKLPEGVDEEAAVMLSDILPTGYECGVLNGKV-----KPGDTVAIVG-AGPVGLAALLTAQL  188 (345)
T ss_pred             cCCeeeeEEEcccccCceEECCCCCCHHHhhhccchhHHHHHHHHhhcCC-----CCCCEEEEEC-CCHHHHHHHHHHHH
Confidence            46999999999987  8999999999999999999999999977667777     8999999988 69999999999999


Q ss_pred             CC-CEEEEEeCc-ccHHHHHhcCCCEEEeCCCCcc--ccccCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEeCCC
Q 045248           90 GN-THVTASCGA-RNIEFVKSLGADEVLDYKTPDG--AALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus        90 ~g-~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~--~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      +| .+|+++.++ ++.+.++++|++.++++.+.+.  ...+.+.+.++|+++|++|. ..+..++++++++|+++.+|..
T Consensus       189 ~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~  268 (345)
T cd08286         189 YSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLELTDGRGVDVVIEAVGIPATFELCQELVAPGGHIANVGVH  268 (345)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCCcEEEEeccc
Confidence            99 588887764 6788889999999998765442  22344566789999999986 4477888999999999999854


Q ss_pred             chHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEE--ecCceecchhHHHHHHHHHcCC--CcccEEEeC
Q 045248          165 PSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKT--VINSKHPLSKAEDAWAESIDGH--ATGKIIVEP  240 (240)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~a~~~~~~~~--~~gkvvl~~  240 (240)
                      .. ...++...+..++.++.+...  ..+.+++++++++++.+.+  .+++++++++++++++.+....  ...|+|++|
T Consensus       269 ~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~k~~~~~  345 (345)
T cd08286         269 GK-PVDLHLEKLWIKNITITTGLV--DTNTTPMLLKLVSSGKLDPSKLVTHRFKLSEIEKAYDTFSAAAKHKALKVIIDF  345 (345)
T ss_pred             CC-CCCcCHHHHhhcCcEEEeecC--chhhHHHHHHHHHcCCCChHHcEEeEeeHHHHHHHHHHHhccCCCCeeEEEEeC
Confidence            32 122233333456666666432  3357888999999998875  4678999999999999988753  345999875

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=99.94  E-value=1.8e-25  Score=183.48  Aligned_cols=218  Identities=19%  Similarity=0.194  Sum_probs=172.7

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g   91 (240)
                      ..|+|+||+.++++.++++|+++++++++ ++..+.+||+++ ...++     +++++|||+| +|++|.+++|+|+.+|
T Consensus       114 ~~g~~~~~~~v~~~~~~~lP~~~s~~~a~-~~~~~~~a~~~~-~~~~~-----~~g~~VlI~g-~g~vg~~~~~la~~~G  185 (341)
T cd08262         114 APGGYAEYMLLSEALLLRVPDGLSMEDAA-LTEPLAVGLHAV-RRARL-----TPGEVALVIG-CGPIGLAVIAALKARG  185 (341)
T ss_pred             CCCceeeeEEechHHeEECCCCCCHHHhh-hhhhHHHHHHHH-HhcCC-----CCCCEEEEEC-CCHHHHHHHHHHHHcC
Confidence            46999999999999999999999999877 566778999986 77778     8999999998 6999999999999999


Q ss_pred             CE-EEEEeC-cccHHHHHhcCCCEEEeCCCCcc-----ccccCCCCCcccEEEeCCCCC-CccccccCCCCCcEEEEeCC
Q 045248           92 TH-VTASCG-ARNIEFVKSLGADEVLDYKTPDG-----AALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus        92 ~~-v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~-----~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~g~  163 (240)
                      ++ ++++.+ +++.++++++|+++++++...+.     ...+...++++|+++|++|+. .+..++++++++|+++.+|.
T Consensus       186 ~~~v~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~  265 (341)
T cd08262         186 VGPIVASDFSPERRALALAMGADIVVDPAADSPFAAWAAELARAGGPKPAVIFECVGAPGLIQQIIEGAPPGGRIVVVGV  265 (341)
T ss_pred             CcEEEEECCCHHHHHHHHHcCCcEEEcCCCcCHHHHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECC
Confidence            95 555554 47888889999988888765431     122344567899999999984 57888999999999999985


Q ss_pred             CchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEE--ecCceecchhHHHHHHHHHcCCCcccEEEe
Q 045248          164 GPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKT--VINSKHPLSKAEDAWAESIDGHATGKIIVE  239 (240)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~  239 (240)
                      ...... ........++.++.++. ..+.+.+++++++++++.+.+  .+++.+++++++++++.+.++...||+|++
T Consensus       266 ~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~~~~kvvv~  341 (341)
T cd08262         266 CMESDN-IEPALAIRKELTLQFSL-GYTPEEFADALDALAEGKVDVAPMVTGTVGLDGVPDAFEALRDPEHHCKILVD  341 (341)
T ss_pred             CCCCCc-cCHHHHhhcceEEEEEe-cccHHHHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcCCCceEEEeC
Confidence            422111 11111134566666554 356678999999999999875  457889999999999999999888999874

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=99.94  E-value=3.3e-25  Score=181.07  Aligned_cols=218  Identities=24%  Similarity=0.312  Sum_probs=175.2

Q ss_pred             ccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHH
Q 045248            9 VSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAK   88 (240)
Q Consensus         9 ~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~   88 (240)
                      +.+..|+|++|+.++++.++++|+++++++++.++..+.+||+++. ...+     .++++|||+| +|++|++++++|+
T Consensus       111 ~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~l~~~~~ta~~~l~-~~~~-----~~~~~vlI~g-~g~iG~~~~~~a~  183 (330)
T cd08245         111 GYTTQGGYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVYSALR-DAGP-----RPGERVAVLG-IGGLGHLAVQYAR  183 (330)
T ss_pred             CcccCCccccEEEEcHHHeEECCCCCCHHHhhhhhhhHHHHHHHHH-hhCC-----CCCCEEEEEC-CCHHHHHHHHHHH
Confidence            4445799999999999999999999999999999999999999994 4677     8999999997 7889999999999


Q ss_pred             hCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEeCCCch
Q 045248           89 LGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITPGPS  166 (240)
Q Consensus        89 ~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~~~~  166 (240)
                      .+|++|++++++ ++.+.++++|++.+++.........  . ..++|+++|+++. .....++++++++|+++.++....
T Consensus       184 ~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~-~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~i~~~~~~~  260 (330)
T cd08245         184 AMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQA--A-AGGADVILVTVVSGAAAEAALGGLRRGGRIVLVGLPES  260 (330)
T ss_pred             HCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHh--c-cCCCCEEEECCCcHHHHHHHHHhcccCCEEEEECCCCC
Confidence            999999998865 7888889999988887554331111  2 2479999999885 558889999999999999985432


Q ss_pred             HHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEE
Q 045248          167 AMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIV  238 (240)
Q Consensus       167 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl  238 (240)
                      .........+..++.++.+... .....++++++++.++.+.+ ..+.+++++++++++.+.++...||+|+
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~~l~~-~~~~~~~~~~~~a~~~~~~~~~~~~~v~  330 (330)
T cd08245         261 PPFSPDIFPLIMKRQSIAGSTH-GGRADLQEALDFAAEGKVKP-MIETFPLDQANEAYERMEKGDVRFRFVL  330 (330)
T ss_pred             CccccchHHHHhCCCEEEEecc-CCHHHHHHHHHHHHcCCCcc-eEEEEcHHHHHHHHHHHHcCCCCcceeC
Confidence            2222212334456667777654 45678999999999999876 4468999999999999999988888874

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=99.94  E-value=9.3e-26  Score=172.50  Aligned_cols=221  Identities=24%  Similarity=0.318  Sum_probs=181.0

Q ss_pred             ccceEEEecCCc--eeeCC--CCCChhhhh-hhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHh
Q 045248           15 GLAEFAVAKESS--TVARP--SEVSAAEGS-GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKL   89 (240)
Q Consensus        15 ~~~e~~~v~~~~--~~~ip--~~~~~~~aa-~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~   89 (240)
                      +|.||.++++..  .+++|  .++++.-.. ++..+.+|||-.+++.+..     ++|++|+|.||+|++|+.+.|+|+.
T Consensus       102 gWeeysii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~p-----k~geTv~VSaAsGAvGql~GQ~Ak~  176 (343)
T KOG1196|consen  102 GWEEYSVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSP-----KKGETVFVSAASGAVGQLVGQFAKL  176 (343)
T ss_pred             cceEEEEecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCC-----CCCCEEEEeeccchhHHHHHHHHHh
Confidence            799999997753  34444  345544433 4466778999999999988     8999999999999999999999999


Q ss_pred             CCCEEEEEeCc-ccHHHHH-hcCCCEEEeCCCCc--cccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCc
Q 045248           90 GNTHVTASCGA-RNIEFVK-SLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus        90 ~g~~v~~~~~~-~~~~~~~-~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~  165 (240)
                      +||+|+.++.+ ++...++ ++|.+..+||.++.  ...++...++|+|+-||.+|+..++..+..++..|+++.+|..+
T Consensus       177 ~Gc~VVGsaGS~EKv~ll~~~~G~d~afNYK~e~~~~~aL~r~~P~GIDiYfeNVGG~~lDavl~nM~~~gri~~CG~IS  256 (343)
T KOG1196|consen  177 MGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLSAALKRCFPEGIDIYFENVGGKMLDAVLLNMNLHGRIAVCGMIS  256 (343)
T ss_pred             cCCEEEEecCChhhhhhhHhccCCccceeccCccCHHHHHHHhCCCcceEEEeccCcHHHHHHHHhhhhccceEeeeeeh
Confidence            99999999965 8888885 67999999999884  45667788999999999999999999999999999999999543


Q ss_pred             -----hHHHHHHHhhheeccceeeeEEEcC----CHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccE
Q 045248          166 -----SAMLTFALKKLTFSKKQLVPLLLIP----KRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKI  236 (240)
Q Consensus       166 -----~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkv  236 (240)
                           ..+.-.....+..+++++.++....    ..+.++.+..++.+|+|+-.-+-.-.|+..++||.-+.+|+..||.
T Consensus       257 qYN~~~~~~~~~l~~ii~Kr~~iqgflv~d~~d~~~k~ld~l~~~ikegKI~y~edi~~Glen~P~A~vglf~GkNvGKq  336 (343)
T KOG1196|consen  257 QYNLENPEGLHNLSTIIYKRIRIQGFLVSDYLDKYPKFLDFLLPYIKEGKITYVEDIADGLENGPSALVGLFHGKNVGKQ  336 (343)
T ss_pred             hccccCCccccchhhheeeeEEeeeEEeechhhhhHHHHHHHHHHHhcCceEEehhHHHHHhccHHHHHHHhccCcccce
Confidence                 1122223456779999999976532    3556788899999999987666566899999999999999999999


Q ss_pred             EEeC
Q 045248          237 IVEP  240 (240)
Q Consensus       237 vl~~  240 (240)
                      ++.+
T Consensus       337 iv~v  340 (343)
T KOG1196|consen  337 LVKV  340 (343)
T ss_pred             EEEe
Confidence            8763

>cd05281 TDH Threonine dehydrogenase

Probab=99.94  E-value=1.9e-25  Score=183.35  Aligned_cols=218  Identities=23%  Similarity=0.282  Sum_probs=169.8

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g   91 (240)
                      ..|+|++|++++++.++++|++++++.+ +++..+.++++++.  ...     +++++|+|+| +|++|++++|+|+.+|
T Consensus       117 ~~g~~~~~v~v~~~~~~~lP~~~~~~~a-~~~~~~~~a~~~~~--~~~-----~~g~~vlV~g-~g~vg~~~~~la~~~G  187 (341)
T cd05281         117 TDGCFAEYVVVPEENLWKNDKDIPPEIA-SIQEPLGNAVHTVL--AGD-----VSGKSVLITG-CGPIGLMAIAVAKAAG  187 (341)
T ss_pred             CCCcceEEEEechHHcEECcCCCCHHHh-hhhhHHHHHHHHHH--hcC-----CCCCEEEEEC-CCHHHHHHHHHHHHcC
Confidence            4699999999999999999999998544 56666678888763  334     6899999987 7999999999999999


Q ss_pred             C-EEEEEeCc-ccHHHHHhcCCCEEEeCCCCc-cccccCCCCCcccEEEeCCCCC-CccccccCCCCCcEEEEeCCCchH
Q 045248           92 T-HVTASCGA-RNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTNGKVIDITPGPSA  167 (240)
Q Consensus        92 ~-~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~g~~~~~  167 (240)
                      + +|+++.++ ++.+.++++|++++++....+ ....+...++++|++||++|+. ....++++|+++|+++.+|.....
T Consensus       188 ~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~  267 (341)
T cd05281         188 ASLVIASDPNPYRLELAKKMGADVVINPREEDVVEVKSVTDGTGVDVVLEMSGNPKAIEQGLKALTPGGRVSILGLPPGP  267 (341)
T ss_pred             CcEEEEECCCHHHHHHHHHhCcceeeCcccccHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCCC
Confidence            9 78888654 678888999998888765444 2223445667899999999874 478889999999999999854321


Q ss_pred             HHHHH-HhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceE--EecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          168 MLTFA-LKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLK--TVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       168 ~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                       .... .....+++.++.+.......+.+.+++++++++.+.  +.++..+++++++++|+.+.++. .||+|++|
T Consensus       268 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~-~gk~vv~~  341 (341)
T cd05281         268 -VDIDLNNLVIFKGLTVQGITGRKMFETWYQVSALLKSGKVDLSPVITHKLPLEDFEEAFELMRSGK-CGKVVLYP  341 (341)
T ss_pred             -cccccchhhhccceEEEEEecCCcchhHHHHHHHHHcCCCChhHheEEEecHHHHHHHHHHHhcCC-CceEEecC
Confidence             1111 223556666777655333346788899999999876  45667889999999999999988 89999875

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=99.94  E-value=2e-25  Score=183.16  Aligned_cols=218  Identities=22%  Similarity=0.261  Sum_probs=169.4

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g   91 (240)
                      ..|+|++|++++++.++++|++++++++ +++..+.++++++  ....     .++++++|.| +|++|.+++|+++.+|
T Consensus       115 ~~g~~~~~~~~~~~~~~~lp~~~~~~~a-~~~~~~~~a~~~~--~~~~-----~~g~~vlI~~-~g~vg~~a~~la~~~G  185 (340)
T TIGR00692       115 TDGCFAEYAVVPAQNIWKNPKSIPPEYA-TIQEPLGNAVHTV--LAGP-----ISGKSVLVTG-AGPIGLMAIAVAKASG  185 (340)
T ss_pred             CCCcceeEEEeehHHcEECcCCCChHhh-hhcchHHHHHHHH--HccC-----CCCCEEEEEC-CCHHHHHHHHHHHHcC
Confidence            5799999999999999999999998654 5666777888876  2334     6899999987 7999999999999999


Q ss_pred             CE-EEEEeCc-ccHHHHHhcCCCEEEeCCCCcc-c-cccCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEeCCCch
Q 045248           92 TH-VTASCGA-RNIEFVKSLGADEVLDYKTPDG-A-ALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITPGPS  166 (240)
Q Consensus        92 ~~-v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~-~-~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~~~~  166 (240)
                      ++ |+++.++ ++.+.++++|++.+++....+. . ..+...++++|+++|++|+ ..+...+++++++|+++.+|....
T Consensus       186 ~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~  265 (340)
T TIGR00692       186 AYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEMSGAPKALEQGLQAVTPGGRVSLLGLPPG  265 (340)
T ss_pred             CcEEEEECCCHHHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhcCCCEEEEEccCCC
Confidence            96 8888654 6788889999988887765442 2 2234556789999999986 457888999999999999986432


Q ss_pred             HHHHH-HHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceE--EecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          167 AMLTF-ALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLK--TVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       167 ~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      . ... ....+.+++.++.+.......+.+.++++++++++++  +.+...++++++.++++.+.++. .||+|+++
T Consensus       266 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~-~gkvvv~~  340 (340)
T TIGR00692       266 K-VTIDFTNKVIFKGLTIYGITGRHMFETWYTVSRLIQSGKLDLDPIITHKFKFDKFEKGFELMRSGQ-TGKVILSL  340 (340)
T ss_pred             C-cccchhhhhhhcceEEEEEecCCchhhHHHHHHHHHcCCCChHHheeeeeeHHHHHHHHHHHhcCC-CceEEEeC
Confidence            1 111 2224556666776654223445688899999999986  45678999999999999998887 49999874

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.94  E-value=1.5e-24  Score=176.06  Aligned_cols=220  Identities=41%  Similarity=0.615  Sum_probs=172.3

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      .|+|++|+.++++.++++|+++++++++.+++.+.+||+++.....+     .++++++|+|++|++|++++++++.+|+
T Consensus        95 ~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~g~~vli~g~~g~~g~~~~~la~~~g~  169 (319)
T cd08267          95 GGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKV-----KPGQRVLINGASGGVGTFAVQIAKALGA  169 (319)
T ss_pred             CceeeEEEEechhheEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCC-----CCCCEEEEEcCCcHHHHHHHHHHHHcCC
Confidence            58999999999999999999999999999999999999999776667     8999999999889999999999999999


Q ss_pred             EEEEEeCcccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC--CccccccCCCCCcEEEEeCCCchHHHH
Q 045248           93 HVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI--PWSTFEPNLGTNGKVIDITPGPSAMLT  170 (240)
Q Consensus        93 ~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~--~~~~~~~~l~~~G~iv~~g~~~~~~~~  170 (240)
                      +|++++++++.+.++++|.+.+++....+.. .....++++|+++||+|+.  .....+..++++|+++.+|........
T Consensus       170 ~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~d~vi~~~~~~~~~~~~~~~~l~~~g~~i~~g~~~~~~~~  248 (319)
T cd08267         170 HVTGVCSTRNAELVRSLGADEVIDYTTEDFV-ALTAGGEKYDVIFDAVGNSPFSLYRASLALKPGGRYVSVGGGPSGLLL  248 (319)
T ss_pred             EEEEEeCHHHHHHHHHcCCCEeecCCCCCcc-hhccCCCCCcEEEECCCchHHHHHHhhhccCCCCEEEEeccccccccc
Confidence            9999887678888899999888876544322 3445667899999999953  233444459999999999864322111


Q ss_pred             HH---HhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEE
Q 045248          171 FA---LKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIV  238 (240)
Q Consensus       171 ~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl  238 (240)
                      ..   ..........+......+..+.+.+++++++++.+.+.+++++++++++++++.+.++...+|+++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~~~~~~~~~~vvv  319 (319)
T cd08267         249 VLLLLPLTLGGGGRRLKFFLAKPNAEDLEQLAELVEEGKLKPVIDSVYPLEDAPEAYRRLKSGRARGKVVI  319 (319)
T ss_pred             cccccchhhccccceEEEEEecCCHHHHHHHHHHHHCCCeeeeeeeEEcHHHHHHHHHHHhcCCCCCcEeC
Confidence            11   001112222222222234578899999999999999888899999999999999998887788874

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.94  E-value=6.5e-25  Score=179.68  Aligned_cols=220  Identities=27%  Similarity=0.384  Sum_probs=174.6

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCC-----CCeEEEEcCCchHHHHHHHH
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQ-----QKNILVTAASGGVGHYAVQL   86 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~-----g~~vlV~G~~g~vG~~~~~~   86 (240)
                      ..|+|++|+.++++.++++|+++++++++.+++.+.+||+++....++     .+     +++|+|+|++|++|++++|+
T Consensus        95 ~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~-----~~~~~~~g~~vlV~g~~g~vg~~~~~~  169 (336)
T cd08252          95 RPGSNAEYQLVDERIVGHKPKSLSFAEAAALPLTSLTAWEALFDRLGI-----SEDAENEGKTLLIIGGAGGVGSIAIQL  169 (336)
T ss_pred             CCccceEEEEEchHHeeeCCCCCCHHHhhhhhhHHHHHHHHHHHhcCC-----CCCcCCCCCEEEEEcCCchHHHHHHHH
Confidence            469999999999999999999999999999999999999998777777     55     99999999899999999999


Q ss_pred             HHhCC-CEEEEEeC-cccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEeCC
Q 045248           87 AKLGN-THVTASCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus        87 a~~~g-~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~  163 (240)
                      |+.+| ++|+++++ +++.+.++++|++.+++........+....++++|+++|++|+ ..+..++++++++|+++.+|.
T Consensus       170 a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~  249 (336)
T cd08252         170 AKQLTGLTVIATASRPESIAWVKELGADHVINHHQDLAEQLEALGIEPVDYIFCLTDTDQHWDAMAELIAPQGHICLIVD  249 (336)
T ss_pred             HHHcCCcEEEEEcCChhhHHHHHhcCCcEEEeCCccHHHHHHhhCCCCCCEEEEccCcHHHHHHHHHHhcCCCEEEEecC
Confidence            99999 89999986 4788999999999888765422222233344689999999996 568899999999999999986


Q ss_pred             CchHHHHHHHhhheeccceeeeEEEc-----------CCHHHHHHHHHHHHCCceEEecC---ceecchhHHHHHHHHHc
Q 045248          164 GPSAMLTFALKKLTFSKKQLVPLLLI-----------PKRENLDFLVKLVKEGKLKTVIN---SKHPLSKAEDAWAESID  229 (240)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~i~~~~~~-----------~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~a~~~~~~  229 (240)
                      ...   ......+..++.++.+....           ...+.++++++++.++.+.+..+   ..+++++++++++.+.+
T Consensus       250 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~  326 (336)
T cd08252         250 PQE---PLDLGPLKSKSASFHWEFMFTRSMFQTPDMIEQHEILNEVADLLDAGKLKTTLTETLGPINAENLREAHALLES  326 (336)
T ss_pred             CCC---cccchhhhcccceEEEEEeeccccccccchhhHHHHHHHHHHHHHCCCEecceeeeecCCCHHHHHHHHHHHHc
Confidence            421   11222233445555543321           11345888999999999987543   34799999999999999


Q ss_pred             CCCcccEEEe
Q 045248          230 GHATGKIIVE  239 (240)
Q Consensus       230 ~~~~gkvvl~  239 (240)
                      +...+|++++
T Consensus       327 ~~~~~~vv~~  336 (336)
T cd08252         327 GKTIGKIVLE  336 (336)
T ss_pred             CCccceEEeC
Confidence            9888999874

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=99.93  E-value=5e-25  Score=181.09  Aligned_cols=222  Identities=22%  Similarity=0.268  Sum_probs=170.8

Q ss_pred             ccCCCcccceEEEecCC--ceeeCCCCCChhhhh-----hhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHH
Q 045248            9 VSHNGGGLAEFAVAKES--STVARPSEVSAAEGS-----GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGH   81 (240)
Q Consensus         9 ~~~~~G~~~e~~~v~~~--~~~~ip~~~~~~~aa-----~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~   81 (240)
                      +...+|+|+||+.++.+  .++++|++++++++.     ++...+.+|++++ ...++     +++++++|.| +|++|+
T Consensus       110 ~~~~~g~~~~~~~v~~~~~~~~~lP~~l~~~~~~~~~~~~l~~~~~~a~~~~-~~~~~-----~~g~~vlI~g-~g~vg~  182 (345)
T cd08287         110 GAFVDGGQGEYVRVPLADGTLVKVPGSPSDDEDLLPSLLALSDVMGTGHHAA-VSAGV-----RPGSTVVVVG-DGAVGL  182 (345)
T ss_pred             cCCCCCceEEEEEcchhhCceEECCCCCChhhhhhhhhHhhhcHHHHHHHHH-HhcCC-----CCCCEEEEEC-CCHHHH
Confidence            33456999999999975  999999999983221     2225677899998 56677     7899999987 899999


Q ss_pred             HHHHHHHhCCCE-EEEEeCc-ccHHHHHhcCCCEEEeCCCCc-cc-cccCCCCCcccEEEeCCCC-CCccccccCCCCCc
Q 045248           82 YAVQLAKLGNTH-VTASCGA-RNIEFVKSLGADEVLDYKTPD-GA-ALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNG  156 (240)
Q Consensus        82 ~~~~~a~~~g~~-v~~~~~~-~~~~~~~~~g~~~v~~~~~~~-~~-~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G  156 (240)
                      +++|+|+++|++ ++++++. ++.+.++++|++.++++.... .. ..+.+.+.++|+++|++|+ ..+..++++++++|
T Consensus       183 ~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~i~~~~~~~~~d~il~~~g~~~~~~~~~~~l~~~g  262 (345)
T cd08287         183 CAVLAAKRLGAERIIAMSRHEDRQALAREFGATDIVAERGEEAVARVRELTGGVGADAVLECVGTQESMEQAIAIARPGG  262 (345)
T ss_pred             HHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhccCC
Confidence            999999999995 7777755 578888999999999887654 22 2344566789999999986 45889999999999


Q ss_pred             EEEEeCCCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEE--ecCceecchhHHHHHHHHHcCCCcc
Q 045248          157 KVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKT--VINSKHPLSKAEDAWAESIDGHATG  234 (240)
Q Consensus       157 ~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~a~~~~~~~~~~g  234 (240)
                      +++.+|.... ...+.......++.++.+.. ....+.+++++++++++.+++  .+++.+++++++++++.+.++... 
T Consensus       263 ~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~-  339 (345)
T cd08287         263 RVGYVGVPHG-GVELDVRELFFRNVGLAGGP-APVRRYLPELLDDVLAGRINPGRVFDLTLPLDEVAEGYRAMDERRAI-  339 (345)
T ss_pred             EEEEecccCC-CCccCHHHHHhcceEEEEec-CCcHHHHHHHHHHHHcCCCCHHHhEEeeecHHHHHHHHHHHhCCCce-
Confidence            9999986542 12222223345666666643 345678999999999999886  457889999999999998876654 


Q ss_pred             cEEEeC
Q 045248          235 KIIVEP  240 (240)
Q Consensus       235 kvvl~~  240 (240)
                      |+++++
T Consensus       340 k~~~~~  345 (345)
T cd08287         340 KVLLRP  345 (345)
T ss_pred             EEEeCC
Confidence            998864

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=99.93  E-value=5e-25  Score=182.98  Aligned_cols=217  Identities=20%  Similarity=0.206  Sum_probs=170.8

Q ss_pred             CcccceEEEecCC--ceeeCCCCCChh---hhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHH
Q 045248           13 GGGLAEFAVAKES--STVARPSEVSAA---EGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLA   87 (240)
Q Consensus        13 ~G~~~e~~~v~~~--~~~~ip~~~~~~---~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a   87 (240)
                      +|+|+||+.++..  .++++|++++++   ++++++..+.|+|+++ ...++     .+|++|+|.| +|++|++++|+|
T Consensus       124 ~g~~a~y~~v~~~~~~~~~lP~~~~~~~~~~~a~~~~~~~ta~~a~-~~~~~-----~~g~~vlI~g-~g~vg~~~~~~a  196 (375)
T cd08282         124 GGGQAEYLRVPYADFNLLKLPDRDGAKEKDDYLMLSDIFPTGWHGL-ELAGV-----QPGDTVAVFG-AGPVGLMAAYSA  196 (375)
T ss_pred             CCeeeeEEEeecccCcEEECCCCCChhhhhheeeecchHHHHHHHH-HhcCC-----CCCCEEEEEC-CCHHHHHHHHHH
Confidence            5999999999976  899999999998   5677788888999999 77787     8999999987 799999999999


Q ss_pred             HhCCC-EEEEEeCc-ccHHHHHhcCCCEEEeCCCCc-cccc-cCCCCCcccEEEeCCCCCC------------ccccccC
Q 045248           88 KLGNT-HVTASCGA-RNIEFVKSLGADEVLDYKTPD-GAAL-KSPSGRKYDAVIHCATGIP------------WSTFEPN  151 (240)
Q Consensus        88 ~~~g~-~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~-~~~~-~~~~~~~~d~v~d~~g~~~------------~~~~~~~  151 (240)
                      +++|+ +|++++++ ++.+.++++|++ .+++.+.+ ...+ +.+. +++|+++||+|+..            +..++++
T Consensus       197 ~~~G~~~vi~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~i~~~~~-~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~  274 (375)
T cd08282         197 ILRGASRVYVVDHVPERLDLAESIGAI-PIDFSDGDPVEQILGLEP-GGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRV  274 (375)
T ss_pred             HHcCCCEEEEECCCHHHHHHHHHcCCe-EeccCcccHHHHHHHhhC-CCCCEEEECCCCcccccccccchHHHHHHHHHH
Confidence            99998 89887764 788899999984 56665543 2222 3333 67999999999764            6788899


Q ss_pred             CCCCcEEEEeCCCchH------------HHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEE--ecCceecc
Q 045248          152 LGTNGKVIDITPGPSA------------MLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKT--VINSKHPL  217 (240)
Q Consensus       152 l~~~G~iv~~g~~~~~------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~  217 (240)
                      ++++|+++.+|.....            ...+....+..++..+.+.. ....+.++.++++++++++++  .+++++++
T Consensus       275 l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l  353 (375)
T cd08282         275 TRPGGGIGIVGVYVAEDPGAGDAAAKQGELSFDFGLLWAKGLSFGTGQ-APVKKYNRQLRDLILAGRAKPSFVVSHVISL  353 (375)
T ss_pred             hhcCcEEEEEeccCCcccccccccccCccccccHHHHHhcCcEEEEec-CCchhhHHHHHHHHHcCCCChHHcEEEEeeH
Confidence            9999999888753211            11223333444555555543 345677899999999999986  47899999


Q ss_pred             hhHHHHHHHHHcCCCcccEEEeC
Q 045248          218 SKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       218 ~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      ++++++++.+.++. .+|+|+++
T Consensus       354 ~~~~~a~~~~~~~~-~~kvvv~~  375 (375)
T cd08282         354 EDAPEAYARFDKRL-ETKVVIKP  375 (375)
T ss_pred             HHHHHHHHHHhcCC-ceEEEeCC
Confidence            99999999999888 88999864

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=99.93  E-value=4.1e-25  Score=181.44  Aligned_cols=219  Identities=21%  Similarity=0.269  Sum_probs=171.7

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g   91 (240)
                      ..|+|++|+.++++.++++|+++++++++++ ..+.+||+++ ....+     .++++|+|+| +|.+|.+++|+|+.+|
T Consensus       112 ~~g~~~~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~ta~~~l-~~~~~-----~~~~~vlI~g-~g~~g~~~~~lA~~~G  183 (343)
T cd08236         112 RDGAFAEYVSVPARNLIKIPDHVDYEEAAMI-EPAAVALHAV-RLAGI-----TLGDTVVVIG-AGTIGLLAIQWLKILG  183 (343)
T ss_pred             cCCcccceEEechHHeEECcCCCCHHHHHhc-chHHHHHHHH-HhcCC-----CCCCEEEEEC-CCHHHHHHHHHHHHcC
Confidence            5799999999999999999999999999887 4667999998 47777     7999999997 7999999999999999


Q ss_pred             CE-EEEEeCc-ccHHHHHhcCCCEEEeCCCCccc-cccCCCCCcccEEEeCCCCC-CccccccCCCCCcEEEEeCCCchH
Q 045248           92 TH-VTASCGA-RNIEFVKSLGADEVLDYKTPDGA-ALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTNGKVIDITPGPSA  167 (240)
Q Consensus        92 ~~-v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~-~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~g~~~~~  167 (240)
                      ++ |++++++ ++.+.++++|++.++++.+.... ......+.++|+++||+|+. .+..++++++++|+++.+|.....
T Consensus       184 ~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~  263 (343)
T cd08236         184 AKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEAAGSPATIEQALALARPGGKVVLVGIPYGD  263 (343)
T ss_pred             CCEEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcccCCC
Confidence            96 8888864 77888889999888887654322 22345556799999999864 578899999999999999854321


Q ss_pred             H--HHHHHhhheeccceeeeEEEcC----CHHHHHHHHHHHHCCceE--EecCceecchhHHHHHHHHHc-CCCcccEEE
Q 045248          168 M--LTFALKKLTFSKKQLVPLLLIP----KRENLDFLVKLVKEGKLK--TVINSKHPLSKAEDAWAESID-GHATGKIIV  238 (240)
Q Consensus       168 ~--~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~a~~~~~~-~~~~gkvvl  238 (240)
                      .  .......+..++.++.+++...    ..+.+++++++++++.+.  +.+...+++++++++++.+.+ +...||+|+
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~v~  343 (343)
T cd08236         264 VTLSEEAFEKILRKELTIQGSWNSYSAPFPGDEWRTALDLLASGKIKVEPLITHRLPLEDGPAAFERLADREEFSGKVLL  343 (343)
T ss_pred             cccccCCHHHHHhcCcEEEEEeeccccccchhhHHHHHHHHHcCCCChHHheeeeecHHHHHHHHHHHHcCCCCeeEEeC
Confidence            0  1111222335566666655421    256788999999999875  455678999999999999998 566778874

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=99.93  E-value=7.5e-25  Score=179.61  Aligned_cols=217  Identities=21%  Similarity=0.287  Sum_probs=169.6

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g   91 (240)
                      .+|+|+||++++++.++++|++++++++++ ...+.++|+++.. ...     .++++|||.| +|++|++++|+|+.+|
T Consensus       118 ~~g~~~~~v~v~~~~~~~iP~~~~~~~aa~-~~~~~~a~~~l~~-~~~-----~~~~~VLI~g-~g~vG~~~~~lak~~G  189 (339)
T cd08232         118 VQGGFREYLVVDASQCVPLPDGLSLRRAAL-AEPLAVALHAVNR-AGD-----LAGKRVLVTG-AGPIGALVVAAARRAG  189 (339)
T ss_pred             CCCceeeEEEechHHeEECcCCCCHHHhhh-cchHHHHHHHHHh-cCC-----CCCCEEEEEC-CCHHHHHHHHHHHHcC
Confidence            469999999999999999999999999876 5666789998844 444     4789999987 7999999999999999


Q ss_pred             C-EEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEeCCCchHH
Q 045248           92 T-HVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITPGPSAM  168 (240)
Q Consensus        92 ~-~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~~~~~~  168 (240)
                      + ++++++++ ++.+.++++|++.++++.+.+.... .....++|+++|++|+ ..+...+++|+++|+++.+|..... 
T Consensus       190 ~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~-~~~~~~vd~vld~~g~~~~~~~~~~~L~~~G~~v~~g~~~~~-  267 (339)
T cd08232         190 AAEIVATDLADAPLAVARAMGADETVNLARDPLAAY-AADKGDFDVVFEASGAPAALASALRVVRPGGTVVQVGMLGGP-  267 (339)
T ss_pred             CcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhh-hccCCCccEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCC-
Confidence            9 88888864 6777888999999887765431111 1233569999999996 4588899999999999999854311 


Q ss_pred             HHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEE--ecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          169 LTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKT--VINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       169 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      ..........++.++.+..  ...+.+++++++++++.+++  .+.+++++++++++++.+..+...||+|+++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~~  339 (339)
T cd08232         268 VPLPLNALVAKELDLRGSF--RFDDEFAEAVRLLAAGRIDVRPLITAVFPLEEAAEAFALAADRTRSVKVQLSF  339 (339)
T ss_pred             ccCcHHHHhhcceEEEEEe--cCHHHHHHHHHHHHcCCCCchhheeEEecHHHHHHHHHHHHhCCCceeEEEeC
Confidence            1112222345666666654  34567899999999998863  4677899999999999999888889999874

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.93  E-value=4.7e-25  Score=178.93  Aligned_cols=228  Identities=27%  Similarity=0.381  Sum_probs=178.8

Q ss_pred             eecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHH
Q 045248            6 RIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQ   85 (240)
Q Consensus         6 ~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~   85 (240)
                      ++.+...+|+|++|+.++++.++++|+++++.+++.++..+.++|+++.....+     .++++++|+|++|++|+++++
T Consensus        84 ~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~-----~~~~~vlv~g~~~~ig~~~~~  158 (323)
T cd05276          84 RVCALLAGGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGL-----KAGETVLIHGGASGVGTAAIQ  158 (323)
T ss_pred             EEEEecCCCceeEEEEcCHHHhccCCCCCCHHHHhhchhHHHHHHHHHHHhcCC-----CCCCEEEEEcCcChHHHHHHH
Confidence            334444469999999999999999999999999999999999999998777777     799999999988999999999


Q ss_pred             HHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCc--cccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeC
Q 045248           86 LAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus        86 ~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g  162 (240)
                      +++..|++|+++.++ ++.+.++++|.+.+++....+  ....+...+.++|+++|++|+..+...+++++++|+++.++
T Consensus       159 ~~~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~~~~g~~i~~~  238 (323)
T cd05276         159 LAKALGARVIATAGSEEKLEACRALGADVAINYRTEDFAEEVKEATGGRGVDVILDMVGGDYLARNLRALAPDGRLVLIG  238 (323)
T ss_pred             HHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEeCCchhHHHHHHHHhCCCCeEEEEECCchHHHHHHHHhhccCCEEEEEe
Confidence            999999999988865 778888889988888766543  12223344568999999999877888899999999999987


Q ss_pred             CCchHHHHHHHhhheeccceeeeEEEcC---------CHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCc
Q 045248          163 PGPSAMLTFALKKLTFSKKQLVPLLLIP---------KRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHAT  233 (240)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~  233 (240)
                      .............+..++.++.+.....         ..+.+.++++++.++++.+..++.|++++++++++.+.++...
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  318 (323)
T cd05276         239 LLGGAKAELDLAPLLRKRLTLTGSTLRSRSLEEKAALAAAFREHVWPLFASGRIRPVIDKVFPLEEAAEAHRRMESNEHI  318 (323)
T ss_pred             cCCCCCCCCchHHHHHhCCeEEEeeccchhhhccHHHHHHHHHHHHHHHHCCCccCCcceEEcHHHHHHHHHHHHhCCCc
Confidence            5422111112222223556666654311         1234677888999999987778899999999999999988878


Q ss_pred             ccEEE
Q 045248          234 GKIIV  238 (240)
Q Consensus       234 gkvvl  238 (240)
                      ||+++
T Consensus       319 ~kvv~  323 (323)
T cd05276         319 GKIVL  323 (323)
T ss_pred             ceEeC
Confidence            88874

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>PLN02702 L-idonate 5-dehydrogenase

Probab=99.93  E-value=4.8e-25  Score=182.47  Aligned_cols=217  Identities=22%  Similarity=0.286  Sum_probs=168.0

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      +|+|+||++++++.++++|++++++++++. ..+.++++++ ...++     .++++++|+| +|++|++++|+|+.+|+
T Consensus       135 ~g~~~~y~~v~~~~~~~~P~~l~~~~aa~~-~~~~~a~~~~-~~~~~-----~~g~~vlI~g-~g~vG~~~~~~a~~~G~  206 (364)
T PLN02702        135 HGSLANQVVHPADLCFKLPENVSLEEGAMC-EPLSVGVHAC-RRANI-----GPETNVLVMG-AGPIGLVTMLAARAFGA  206 (364)
T ss_pred             CCcccceEEcchHHeEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCC-----CCCCEEEEEC-CCHHHHHHHHHHHHcCC
Confidence            699999999999999999999999998763 2233578887 77777     7899999997 79999999999999999


Q ss_pred             E-EEEEeCc-ccHHHHHhcCCCEEEeCCC--Cc-cccc---cCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEeCC
Q 045248           93 H-VTASCGA-RNIEFVKSLGADEVLDYKT--PD-GAAL---KSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus        93 ~-v~~~~~~-~~~~~~~~~g~~~v~~~~~--~~-~~~~---~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~  163 (240)
                      + ++++.++ ++.+.++++|++.++++..  .+ ...+   ....+.++|++||++|+ ..+..++++++++|+++.+|.
T Consensus       207 ~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~  286 (364)
T PLN02702        207 PRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGGIDVSFDCVGFNKTMSTALEATRAGGKVCLVGM  286 (364)
T ss_pred             CEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEcc
Confidence            5 5666554 6788889999988876532  22 1221   11334579999999995 558899999999999999985


Q ss_pred             CchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceE--EecCceecc--hhHHHHHHHHHcCCCcccEEEe
Q 045248          164 GPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLK--TVINSKHPL--SKAEDAWAESIDGHATGKIIVE  239 (240)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~--~~~~~a~~~~~~~~~~gkvvl~  239 (240)
                      .... .......+.+++.++.+++.  ....++.++++++++++.  +.+++.|++  +++++|++.+.++...+|+|+.
T Consensus       287 ~~~~-~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~~kvv~~  363 (364)
T PLN02702        287 GHNE-MTVPLTPAAAREVDVVGVFR--YRNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFN  363 (364)
T ss_pred             CCCC-CcccHHHHHhCccEEEEecc--ChHHHHHHHHHHHcCCCCchHheEEEeccChHHHHHHHHHHhcCCCceEEEEe
Confidence            4321 22234445677888888653  356788999999999875  456677555  8999999999988878899986


Q ss_pred             C
Q 045248          240 P  240 (240)
Q Consensus       240 ~  240 (240)
                      +
T Consensus       364 ~  364 (364)
T PLN02702        364 L  364 (364)
T ss_pred             C
Confidence            3

>cd08251 polyketide_synthase polyketide synthase

Probab=99.93  E-value=2.9e-25  Score=178.86  Aligned_cols=221  Identities=29%  Similarity=0.446  Sum_probs=176.2

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g   91 (240)
                      ..|+|++|+.++++.++++|++++++++++++..+.++|+++ ...++     +++++++|+|++|++|++++|+++.+|
T Consensus        72 ~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l-~~~~~-----~~g~~vli~~~~~~~g~~~~~~a~~~g  145 (303)
T cd08251          72 SMGGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF-ARAGL-----AKGEHILIQTATGGTGLMAVQLARLKG  145 (303)
T ss_pred             CCcceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH-HhcCC-----CCCCEEEEecCCcHHHHHHHHHHHHcC
Confidence            359999999999999999999999999999999999999998 56777     899999999999999999999999999


Q ss_pred             CEEEEEeCc-ccHHHHHhcCCCEEEeCCCCc--cccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCch--
Q 045248           92 THVTASCGA-RNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPS--  166 (240)
Q Consensus        92 ~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~--  166 (240)
                      ++|+++++. ++.+.++++|++.+++....+  ......+.+.++|+++|++++......+++++++|+++.++....  
T Consensus       146 ~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~  225 (303)
T cd08251         146 AEIYATASSDDKLEYLKQLGVPHVINYVEEDFEEEIMRLTGGRGVDVVINTLSGEAIQKGLNCLAPGGRYVEIAMTALKS  225 (303)
T ss_pred             CEEEEEcCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHhccCcEEEEEeccCCCc
Confidence            999999865 788888999999888876544  223344566789999999987778888999999999998874321  


Q ss_pred             -H--HHHHHHhhheeccceeeeEEEc---CCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEE
Q 045248          167 -A--MLTFALKKLTFSKKQLVPLLLI---PKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIV  238 (240)
Q Consensus       167 -~--~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl  238 (240)
                       .  ..........++...+......   ...+.+.+++++++++.+++..++.+++++++++++.+.++...+|+++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~  303 (303)
T cd08251         226 APSVDLSVLSNNQSFHSVDLRKLLLLDPEFIADYQAEMVSLVEEGELRPTVSRIFPFDDIGEAYRYLSDRENIGKVVV  303 (303)
T ss_pred             cCccChhHhhcCceEEEEehHHhhhhCHHHHHHHHHHHHHHHHCCCccCCCceEEcHHHHHHHHHHHHhCCCcceEeC
Confidence             1  1111222333444433332211   1134578889999999998878889999999999999998888888874

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.93  E-value=3.4e-24  Score=176.47  Aligned_cols=224  Identities=32%  Similarity=0.493  Sum_probs=172.5

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      .|+|++|+.++++.++++|+++++++++.+++.+.|+|+++.+...+. +...+|++++|+|++|++|++++++++.+|+
T Consensus       110 ~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~-~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~  188 (350)
T cd08248         110 QGTHAEYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLN-PKNAAGKRVLILGGSGGVGTFAIQLLKAWGA  188 (350)
T ss_pred             CccceeEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCC-CccCCCCEEEEECCCChHHHHHHHHHHHCCC
Confidence            699999999999999999999999999999999999999986666551 0001499999999899999999999999999


Q ss_pred             EEEEEeCcccHHHHHhcCCCEEEeCCCCc-cccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchH---H
Q 045248           93 HVTASCGARNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSA---M  168 (240)
Q Consensus        93 ~v~~~~~~~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~---~  168 (240)
                      +|+++.++++.+.++++|.+.+++..+.+ ...+.  ...++|+++|++|+..+..++++++++|+++.+|.....   .
T Consensus       189 ~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~--~~~~vd~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~  266 (350)
T cd08248         189 HVTTTCSTDAIPLVKSLGADDVIDYNNEDFEEELT--ERGKFDVILDTVGGDTEKWALKLLKKGGTYVTLVSPLLKNTDK  266 (350)
T ss_pred             eEEEEeCcchHHHHHHhCCceEEECCChhHHHHHH--hcCCCCEEEECCChHHHHHHHHHhccCCEEEEecCCccccccc
Confidence            99888876778888999998888765533 22222  235799999999988888999999999999998743210   0


Q ss_pred             --H--HHHHhhheec---------cceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCccc
Q 045248          169 --L--TFALKKLTFS---------KKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGK  235 (240)
Q Consensus       169 --~--~~~~~~~~~~---------~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gk  235 (240)
                        .  ......+.+.         ...+.........+.+.++++++.++.+.+.+++.+++++++++++.+.++...+|
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  346 (350)
T cd08248         267 LGLVGGMLKSAVDLLKKNVKSLLKGSHYRWGFFSPSGSALDELAKLVEDGKIKPVIDKVFPFEEVPEAYEKVESGHARGK  346 (350)
T ss_pred             ccccchhhhhHHHHHHHHHHHHhcCCCeeEEEECCCHHHHHHHHHHHhCCCEecccceeecHHHHHHHHHHHhcCCCceE
Confidence              0  0000111111         11111111234577899999999999998888889999999999999998887888


Q ss_pred             EEEe
Q 045248          236 IIVE  239 (240)
Q Consensus       236 vvl~  239 (240)
                      ++++
T Consensus       347 vv~~  350 (350)
T cd08248         347 TVIK  350 (350)
T ss_pred             EEeC
Confidence            8864

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=99.93  E-value=8.1e-25  Score=178.67  Aligned_cols=220  Identities=34%  Similarity=0.424  Sum_probs=172.6

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      .|+|++|+.++.+.++++|++  ..++++++..+.|||+++.....+     .++++++|+|++|++|++++|+++..|+
T Consensus        93 ~g~~~s~~~v~~~~~~~ip~~--~~~~a~l~~~~~ta~~~l~~~~~~-----~~~~~vlI~ga~g~ig~~~~~~a~~~g~  165 (329)
T cd08250          93 FGAFAEYQVVPARHAVPVPEL--KPEVLPLLVSGLTASIALEEVGEM-----KSGETVLVTAAAGGTGQFAVQLAKLAGC  165 (329)
T ss_pred             CcceeEEEEechHHeEECCCC--cchhhhcccHHHHHHHHHHHhcCC-----CCCCEEEEEeCccHHHHHHHHHHHHcCC
Confidence            589999999999999999997  356778888999999999777777     8999999999999999999999999999


Q ss_pred             EEEEEeCc-ccHHHHHhcCCCEEEeCCCCc-cccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchH---
Q 045248           93 HVTASCGA-RNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSA---  167 (240)
Q Consensus        93 ~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~---  167 (240)
                      +|++++++ ++.+.++++|++.+++..+.+ ...+....++++|+++|++|+..+..++++++++|+++.+|.....   
T Consensus       166 ~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vd~v~~~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~  245 (329)
T cd08250         166 HVIGTCSSDEKAEFLKSLGCDRPINYKTEDLGEVLKKEYPKGVDVVYESVGGEMFDTCVDNLALKGRLIVIGFISGYQSG  245 (329)
T ss_pred             eEEEEeCcHHHHHHHHHcCCceEEeCCCccHHHHHHHhcCCCCeEEEECCcHHHHHHHHHHhccCCeEEEEecccCCccc
Confidence            99998865 788888999998888766544 2222222346899999999987788999999999999999854321   


Q ss_pred             ------HHHHHHhhheeccceeeeEEEcC----CHHHHHHHHHHHHCCceEEe--cCceecchhHHHHHHHHHcCCCccc
Q 045248          168 ------MLTFALKKLTFSKKQLVPLLLIP----KRENLDFLVKLVKEGKLKTV--INSKHPLSKAEDAWAESIDGHATGK  235 (240)
Q Consensus       168 ------~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~a~~~~~~~~~~gk  235 (240)
                            ...........++.++.+.....    ..+.+.+++++++++.+.+.  ..+.++++++++|++.+..+...+|
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~k  325 (329)
T cd08250         246 TGPSPVKGATLPPKLLAKSASVRGFFLPHYAKLIPQHLDRLLQLYQRGKLVCEVDPTRFRGLESVADAVDYLYSGKNIGK  325 (329)
T ss_pred             CcccccccccccHHHhhcCceEEEEEhHHHHHHHHHHHHHHHHHHHCCCeeeeECCccccCHHHHHHHHHHHHcCCCCce
Confidence                  00001112234555666654311    24567889999999998873  4456899999999999998888889


Q ss_pred             EEEe
Q 045248          236 IIVE  239 (240)
Q Consensus       236 vvl~  239 (240)
                      +|++
T Consensus       326 vvv~  329 (329)
T cd08250         326 VVVE  329 (329)
T ss_pred             EEeC
Confidence            9874

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.93  E-value=1.5e-24  Score=176.74  Aligned_cols=223  Identities=23%  Similarity=0.318  Sum_probs=171.6

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHh--hhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHh
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQ--SAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKL   89 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~--~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~   89 (240)
                      .+|+|++|+.++.+.++++|+++++++++.++..+++++.++..  ..+..    +++++++|+|++|++|++++|+|+.
T Consensus        94 ~~g~~~~~~~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~----~~~~~vlI~ga~g~vg~~~~~~A~~  169 (324)
T cd08288          94 HWGGYAQRARVKADWLVPLPEGLSARQAMAIGTAGFTAMLCVMALEDHGVT----PGDGPVLVTGAAGGVGSVAVALLAR  169 (324)
T ss_pred             CCCcceeEEEEchHHeeeCCCCCCHHHHhhhhhHHHHHHHHHHHHhhcCcC----CCCCEEEEECCCcHHHHHHHHHHHH
Confidence            37999999999999999999999999999999998898877631  23331    3678999999889999999999999


Q ss_pred             CCCEEEEEeC-cccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchHH
Q 045248           90 GNTHVTASCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAM  168 (240)
Q Consensus        90 ~g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~  168 (240)
                      +|++|+++++ +++.+.++++|++.++++.+... .+......++|.++|++|+..+...+..++.+|+++.+|......
T Consensus       170 ~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~G~~~~~~  248 (324)
T cd08288         170 LGYEVVASTGRPEEADYLRSLGASEIIDRAELSE-PGRPLQKERWAGAVDTVGGHTLANVLAQTRYGGAVAACGLAGGAD  248 (324)
T ss_pred             CCCeEEEEeCCHHHHHHHHhcCCCEEEEcchhhH-hhhhhccCcccEEEECCcHHHHHHHHHHhcCCCEEEEEEecCCCC
Confidence            9999988885 58899999999999988764332 222223345899999999866677788889999999888532111


Q ss_pred             HHHHHhhheeccceeeeEEEc-----CCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          169 LTFALKKLTFSKKQLVPLLLI-----PKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       169 ~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      .+.....+..++.++.+....     ...+.+..+.+++..+.+.+ +++.+++++++++++.+.+++..+|+|+++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~a~~~~~~~~~~~~vvv~~  324 (324)
T cd08288         249 LPTTVMPFILRGVTLLGIDSVMAPIERRRAAWARLARDLDPALLEA-LTREIPLADVPDAAEAILAGQVRGRVVVDV  324 (324)
T ss_pred             CCcchhhhhccccEEEEEEeecccchhhHHHHHHHHHHHhcCCccc-cceeecHHHHHHHHHHHhcCCccCeEEEeC
Confidence            112222233566666665321     12346777888888888876 467999999999999999999999999874

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=99.93  E-value=9.7e-25  Score=178.56  Aligned_cols=216  Identities=21%  Similarity=0.259  Sum_probs=170.4

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g   91 (240)
                      ..|+|++|+.++++.++++|+++++.+++.+ ..+.++++++ ...++     .++++++|+| +|.+|.+++++|+..|
T Consensus       112 ~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~l-~~~~~-----~~g~~vlI~g-~g~vg~~~~~la~~~G  183 (334)
T cd08234         112 RNGGFAEYVVVPAKQVYKIPDNLSFEEAALA-EPLSCAVHGL-DLLGI-----KPGDSVLVFG-AGPIGLLLAQLLKLNG  183 (334)
T ss_pred             CCCcceeEEEecHHHcEECcCCCCHHHHhhh-hHHHHHHHHH-HhcCC-----CCCCEEEEEC-CCHHHHHHHHHHHHcC
Confidence            5799999999999999999999999998766 6677899988 77888     8999999997 7999999999999999


Q ss_pred             CE-EEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEeCCCch-H
Q 045248           92 TH-VTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITPGPS-A  167 (240)
Q Consensus        92 ~~-v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~~~~-~  167 (240)
                      ++ |++++++ ++.+.++++|++.+++..+.+....+.+.++++|+++|++|. ..+..++++++++|+++.+|.... .
T Consensus       184 ~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~  263 (334)
T cd08234         184 ASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVPKTLEQAIEYARRGGTVLVFGVYAPDA  263 (334)
T ss_pred             CcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCChHHHHHHHHHHhcCCEEEEEecCCCCC
Confidence            96 7777754 788888999988888766544211134456789999999985 457888999999999999985432 1


Q ss_pred             HHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEE--ecCceecchhHHHHHHHHHcCCCcccEEE
Q 045248          168 MLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKT--VINSKHPLSKAEDAWAESIDGHATGKIIV  238 (240)
Q Consensus       168 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvl  238 (240)
                      ..++....+..++.++.+..  ...+.+++++++++++++.+  .++.++++++++++++.+.+ ...||+|+
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~-~~~~k~vi  333 (334)
T cd08234         264 RVSISPFEIFQKELTIIGSF--INPYTFPRAIALLESGKIDVKGLVSHRLPLEEVPEALEGMRS-GGALKVVV  333 (334)
T ss_pred             CcccCHHHHHhCCcEEEEec--cCHHHHHHHHHHHHcCCCChhhhEEEEecHHHHHHHHHHHhc-CCceEEEe
Confidence            12222222233555666654  35667899999999999874  35678999999999999998 67889886

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.93  E-value=1.7e-24  Score=175.41  Aligned_cols=217  Identities=19%  Similarity=0.215  Sum_probs=169.5

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      .|+|++|+.++++.++++|+++  ..++.+...+.++++++. ..++     +++++++|+| +|++|++++|+|+.+|+
T Consensus        84 ~g~~~~~~~v~~~~~~~lP~~~--~~~~~~~~~~~~a~~~~~-~~~~-----~~~~~vlI~g-~g~vg~~~~~la~~~g~  154 (312)
T cd08269          84 GGAFAEYDLADADHAVPLPSLL--DGQAFPGEPLGCALNVFR-RGWI-----RAGKTVAVIG-AGFIGLLFLQLAAAAGA  154 (312)
T ss_pred             CCcceeeEEEchhheEECCCch--hhhHHhhhhHHHHHHHHH-hcCC-----CCCCEEEEEC-CCHHHHHHHHHHHHcCC
Confidence            5899999999999999999998  233322366678999884 7777     8999999997 79999999999999999


Q ss_pred             E-EEEEeCc-ccHHHHHhcCCCEEEeCCCCc-cc-cccCCCCCcccEEEeCCCCC-CccccccCCCCCcEEEEeCCCchH
Q 045248           93 H-VTASCGA-RNIEFVKSLGADEVLDYKTPD-GA-ALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTNGKVIDITPGPSA  167 (240)
Q Consensus        93 ~-v~~~~~~-~~~~~~~~~g~~~v~~~~~~~-~~-~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~g~~~~~  167 (240)
                      + |+++.++ ++.+.++++|++.+++..... .. ..+.+.+.++|+++||+|+. .+..++++++++|+++.+|.....
T Consensus       155 ~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~~~g~~~~~  234 (312)
T cd08269         155 RRVIAIDRRPARLALARELGATEVVTDDSEAIVERVRELTGGAGADVVIEAVGHQWPLDLAGELVAERGRLVIFGYHQDG  234 (312)
T ss_pred             cEEEEECCCHHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCCC
Confidence            7 9888865 678888999998888755433 22 23445667899999999864 478899999999999999865322


Q ss_pred             HHHHHHhhheeccceeeeEEEc---CCHHHHHHHHHHHHCCceEE--ecCceecchhHHHHHHHHHcCCC-cccEEE
Q 045248          168 MLTFALKKLTFSKKQLVPLLLI---PKRENLDFLVKLVKEGKLKT--VINSKHPLSKAEDAWAESIDGHA-TGKIIV  238 (240)
Q Consensus       168 ~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~a~~~~~~~~~-~gkvvl  238 (240)
                      ...+....+.+++.++.++...   ...+.+++++++++++.+.+  .+++.+++++++++++.+.+++. .+|+++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  311 (312)
T cd08269         235 PRPVPFQTWNWKGIDLINAVERDPRIGLEGMREAVKLIADGRLDLGSLLTHEFPLEELGDAFEAARRRPDGFIKGVI  311 (312)
T ss_pred             CcccCHHHHhhcCCEEEEecccCccchhhHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHHhCCCCceEEEe
Confidence            2333334566777777665431   22468999999999999886  46678999999999999998864 578876

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.93  E-value=1.9e-24  Score=175.64  Aligned_cols=227  Identities=23%  Similarity=0.354  Sum_probs=178.8

Q ss_pred             ccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHH
Q 045248            9 VSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAK   88 (240)
Q Consensus         9 ~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~   88 (240)
                      +...+|+|++|+.+++..++++|+++++.++++++..+.++|+++.....+     .++++++|+|++|++|.+++++++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~~~~~~~~-----~~~~~vlv~g~~~~~g~~~~~~a~  161 (325)
T TIGR02824        87 ALVAGGGYAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGGL-----KAGETVLIHGGASGIGTTAIQLAK  161 (325)
T ss_pred             EccCCCcceeEEEecHHHcEeCCCCCCHHHHHhhhHHHHHHHHHHHHhcCC-----CCCCEEEEEcCcchHHHHHHHHHH
Confidence            333458999999999999999999999999999999999999998777888     899999999999999999999999


Q ss_pred             hCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCc--cccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCc
Q 045248           89 LGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus        89 ~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~  165 (240)
                      .+|++|++++++ ++.+.++++|.+.+++....+  ........++++|+++|++|+..+..++++++++|+++.+|...
T Consensus       162 ~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~l~~~g~~v~~g~~~  241 (325)
T TIGR02824       162 AFGARVFTTAGSDEKCAACEALGADIAINYREEDFVEVVKAETGGKGVDVILDIVGGSYLNRNIKALALDGRIVQIGFQG  241 (325)
T ss_pred             HcCCEEEEEeCCHHHHHHHHHcCCcEEEecCchhHHHHHHHHcCCCCeEEEEECCchHHHHHHHHhhccCcEEEEEecCC
Confidence            999999988864 677788889988777655433  12223344568999999999877888999999999999998543


Q ss_pred             hHHHHHHHhhheeccceeeeEEEcC---------CHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccE
Q 045248          166 SAMLTFALKKLTFSKKQLVPLLLIP---------KRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKI  236 (240)
Q Consensus       166 ~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkv  236 (240)
                      ..........+..++.++.+.....         ..+.+.+++++++++.+.+..++.+++++++++++.+.++...+|+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (325)
T TIGR02824       242 GRKAELDLGPLLAKRLTITGSTLRARPVAEKAAIAAELREHVWPLLASGRVRPVIDKVFPLEDAAQAHALMESGDHIGKI  321 (325)
T ss_pred             CCcCCCChHHHHhcCCEEEEEehhhcchhhhHHHHHHHHHHHHHHHHCCcccCccccEEeHHHHHHHHHHHHhCCCcceE
Confidence            2111122222235566666654311         1234567788999999887788899999999999999988888999


Q ss_pred             EEeC
Q 045248          237 IVEP  240 (240)
Q Consensus       237 vl~~  240 (240)
                      ++++
T Consensus       322 v~~~  325 (325)
T TIGR02824       322 VLTV  325 (325)
T ss_pred             EEeC
Confidence            9864

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.93  E-value=2.2e-24  Score=175.18  Aligned_cols=223  Identities=28%  Similarity=0.429  Sum_probs=177.5

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g   91 (240)
                      ..|++++|+.++++.++++|+++++++++.+++.+.+||+++....++     .++++++|+|++|++|++++++++.+|
T Consensus        95 ~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~l~~~~~~-----~~g~~vlI~g~~~~~g~~~~~~a~~~g  169 (325)
T cd08253          95 RQGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGA-----KAGETVLVHGGSGAVGHAAVQLARWAG  169 (325)
T ss_pred             CCcceeeEEEecHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHHhCC-----CCCCEEEEEcCCchHHHHHHHHHHHcC
Confidence            378999999999999999999999999999999999999999777888     899999999999999999999999999


Q ss_pred             CEEEEEeCc-ccHHHHHhcCCCEEEeCCCCcc-c-cccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchHH
Q 045248           92 THVTASCGA-RNIEFVKSLGADEVLDYKTPDG-A-ALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAM  168 (240)
Q Consensus        92 ~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~-~-~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~  168 (240)
                      ++|++++++ ++.+.++++|++.+++....+. . ..+.+.++++|+++|++|+......+++++++|+++.++.... .
T Consensus       170 ~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~~~~~~-~  248 (325)
T cd08253         170 ARVIATASSAEGAELVRQAGADAVFNYRAEDLADRILAATAGQGVDVIIEVLANVNLAKDLDVLAPGGRIVVYGSGGL-R  248 (325)
T ss_pred             CEEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHHcCCCceEEEEECCchHHHHHHHHhhCCCCEEEEEeecCC-c
Confidence            999999874 7788888899988887665442 2 2233455689999999998777888899999999999986431 1


Q ss_pred             HHHHHhhheeccceeeeEEEc-CC----HHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          169 LTFALKKLTFSKKQLVPLLLI-PK----RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       169 ~~~~~~~~~~~~~~i~~~~~~-~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      .......+..++.++.+.... ..    .+.++.+.+++..+.+++..++.+++++++++++.+.++...||+++++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~kvv~~~  325 (325)
T cd08253         249 GTIPINPLMAKEASIRGVLLYTATPEERAAAAEAIAAGLADGALRPVIAREYPLEEAAAAHEAVESGGAIGKVVLDP  325 (325)
T ss_pred             CCCChhHHHhcCceEEeeehhhcCHHHHHHHHHHHHHHHHCCCccCccccEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence            111122222334444443321 11    2356677788888988877888999999999999999988899999875

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.93  E-value=8e-24  Score=172.26  Aligned_cols=224  Identities=34%  Similarity=0.487  Sum_probs=180.7

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g   91 (240)
                      ..|+|++|+.++++.++++|+++++.+++.+++.+.++++++.+..++     .++++++|+|++|++|++++++++..|
T Consensus        92 ~~~~~~s~~~~~~~~~~~ip~~~~~~~~a~~~~~~~~a~~~~~~~~~~-----~~g~~vlI~g~~~~ig~~~~~~a~~~g  166 (325)
T cd08271          92 RGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRI-----EAGRTILITGGAGGVGSFAVQLAKRAG  166 (325)
T ss_pred             CCccceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhcCC-----CCCCEEEEECCccHHHHHHHHHHHHcC
Confidence            368999999999999999999999999999999999999999787877     899999999988899999999999999


Q ss_pred             CEEEEEeCcccHHHHHhcCCCEEEeCCCCc-c-ccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchH-H
Q 045248           92 THVTASCGARNIEFVKSLGADEVLDYKTPD-G-AALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSA-M  168 (240)
Q Consensus        92 ~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~-~-~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~-~  168 (240)
                      ++|+++.++++.+.++++|++.+++..... . .......++++|.+++++++......+++++++|+++.++..... .
T Consensus       167 ~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~  246 (325)
T cd08271         167 LRVITTCSKRNFEYVKSLGADHVIDYNDEDVCERIKEITGGRGVDAVLDTVGGETAAALAPTLAFNGHLVCIQGRPDASP  246 (325)
T ss_pred             CEEEEEEcHHHHHHHHHcCCcEEecCCCccHHHHHHHHcCCCCCcEEEECCCcHhHHHHHHhhccCCEEEEEcCCCCCcc
Confidence            998888766777888899998888765544 2 223344567899999999987767789999999999988743221 1


Q ss_pred             HHHHHhhheeccceeeeEEEcC-------CHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          169 LTFALKKLTFSKKQLVPLLLIP-------KRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       169 ~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      .......+.+++.++.......       ..+.+.+++++++++.+.+..++.++++++.++++.+.++...+|+++++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~~kiv~~~  325 (325)
T cd08271         247 DPPFTRALSVHEVALGAAHDHGDPAAWQDLRYAGEELLELLAAGKLEPLVIEVLPFEQLPEALRALKDRHTRGKIVVTI  325 (325)
T ss_pred             hhHHhhcceEEEEEecccccccchhhHHHHHHHHHHHHHHHHCCCeeeccceEEcHHHHHHHHHHHHcCCccceEEEEC
Confidence            2223345566666665543211       12456788999999999887778899999999999999888889999874

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.93  E-value=1e-23  Score=170.29  Aligned_cols=214  Identities=34%  Similarity=0.517  Sum_probs=174.8

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      .|+|++|+.+++..++++|+++++.+++.++..+.++++++.....+     .++++++|+|++|++|++++++++..|+
T Consensus        96 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~vlv~g~~g~~g~~~~~~a~~~g~  170 (309)
T cd05289          96 GGAYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQALFELGGL-----KAGQTVLIHGAAGGVGSFAVQLAKARGA  170 (309)
T ss_pred             CCcceeEEEecHHHhccCCCCCCHHHHHhhhHHHHHHHHHHHhhcCC-----CCCCEEEEecCCchHHHHHHHHHHHcCC
Confidence            68999999999999999999999999999999999999999666667     7899999999889999999999999999


Q ss_pred             EEEEEeCcccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchHHHHHH
Q 045248           93 HVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFA  172 (240)
Q Consensus        93 ~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~  172 (240)
                      +|++++++++.+.++++|.+.+++....+...  ...+.++|.++|++|+.....++++++++|+++.+|.......   
T Consensus       171 ~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~d~v~~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~---  245 (309)
T cd05289         171 RVIATASAANADFLRSLGADEVIDYTKGDFER--AAAPGGVDAVLDTVGGETLARSLALVKPGGRLVSIAGPPPAEQ---  245 (309)
T ss_pred             EEEEEecchhHHHHHHcCCCEEEeCCCCchhh--ccCCCCceEEEECCchHHHHHHHHHHhcCcEEEEEcCCCcchh---
Confidence            99888865578888899988888765543222  4455689999999998888889999999999999986443211   


Q ss_pred             HhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEE
Q 045248          173 LKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIV  238 (240)
Q Consensus       173 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl  238 (240)
                        ....++.++......+..+.+.+++++++++.+.+.+++.+++++++++++.+..+...+|+|+
T Consensus       246 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~  309 (309)
T cd05289         246 --AAKRRGVRAGFVFVEPDGEQLAELAELVEAGKLRPVVDRVFPLEDAAEAHERLESGHARGKVVL  309 (309)
T ss_pred             --hhhhccceEEEEEecccHHHHHHHHHHHHCCCEEEeeccEEcHHHHHHHHHHHHhCCCCCcEeC
Confidence              1122333333333223367899999999999998888899999999999999998887788774

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.93  E-value=4.8e-24  Score=173.50  Aligned_cols=219  Identities=30%  Similarity=0.495  Sum_probs=176.6

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      .|+|++|+.+++..++++|+++++.+++.++..+.+||+++.+..++     .++++++|+|++|++|++++++++.+|+
T Consensus        96 ~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~-----~~~~~vli~g~~~~~g~~~~~~a~~~g~  170 (326)
T cd08272          96 QGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAV-----QAGQTVLIHGGAGGVGHVAVQLAKAAGA  170 (326)
T ss_pred             CCceeEEEEecHHHcccCCCCCCHHHHHHhHHHHHHHHHHHHHhcCC-----CCCCEEEEEcCCCcHHHHHHHHHHHcCC
Confidence            68999999999999999999999999999999999999998777888     8999999999999999999999999999


Q ss_pred             EEEEEeCcccHHHHHhcCCCEEEeCCCCc-cccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchHHHHH
Q 045248           93 HVTASCGARNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTF  171 (240)
Q Consensus        93 ~v~~~~~~~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~  171 (240)
                      +|++++++++.+.++++|.+.+++..... ....+.+.+.++|+++|++|+.....++++++++|+++.++........ 
T Consensus       171 ~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~-  249 (326)
T cd08272         171 RVYATASSEKAAFARSLGADPIIYYRETVVEYVAEHTGGRGFDVVFDTVGGETLDASFEAVALYGRVVSILGGATHDLA-  249 (326)
T ss_pred             EEEEEechHHHHHHHHcCCCEEEecchhHHHHHHHhcCCCCCcEEEECCChHHHHHHHHHhccCCEEEEEecCCccchh-
Confidence            99988866778888899998887755431 1123345567899999999987788899999999999998754311111 


Q ss_pred             HHhhheeccceeeeEEEc----------CCHHHHHHHHHHHHCCceEEecC-ceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          172 ALKKLTFSKKQLVPLLLI----------PKRENLDFLVKLVKEGKLKTVIN-SKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       172 ~~~~~~~~~~~i~~~~~~----------~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                         ....++.++.+....          ...+.+.++++++.++.+.+.++ +.+++++++++++.+.++...+|+|+++
T Consensus       250 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~  326 (326)
T cd08272         250 ---PLSFRNATYSGVFTLLPLLTGEGRAHHGEILREAARLVERGQLRPLLDPRTFPLEEAAAAHARLESGSARGKIVIDV  326 (326)
T ss_pred             ---hHhhhcceEEEEEcccccccccchhhHHHHHHHHHHHHHCCCcccccccceecHHHHHHHHHHHHcCCcccEEEEEC
Confidence               111344444444321          12456888999999999987766 8999999999999999888789999874

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.93  E-value=5e-24  Score=174.06  Aligned_cols=220  Identities=28%  Similarity=0.348  Sum_probs=170.3

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g   91 (240)
                      ..|+|++|+.++++.++++|+++++++++.++..+.+||+++....++     .++++++|+|++|++|++++++++.+|
T Consensus        90 ~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~-----~~g~~vlI~g~~g~ig~~~~~~a~~~g  164 (331)
T cd08273          90 RVGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKV-----LTGQRVLIHGASGGVGQALLELALLAG  164 (331)
T ss_pred             CCcceeeEEEechHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCC-----CCCCEEEEECCCcHHHHHHHHHHHHcC
Confidence            358999999999999999999999999999999999999999777777     899999999988999999999999999


Q ss_pred             CEEEEEeCcccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchHH---
Q 045248           92 THVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAM---  168 (240)
Q Consensus        92 ~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~---  168 (240)
                      ++|++++++++.+.++++|+.. ++....+.... ...++++|+++|++|+..+..++++++++|+++.+|......   
T Consensus       165 ~~v~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~-~~~~~~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~  242 (331)
T cd08273         165 AEVYGTASERNHAALRELGATP-IDYRTKDWLPA-MLTPGGVDVVFDGVGGESYEESYAALAPGGTLVCYGGNSSLLQGR  242 (331)
T ss_pred             CEEEEEeCHHHHHHHHHcCCeE-EcCCCcchhhh-hccCCCceEEEECCchHHHHHHHHHhcCCCEEEEEccCCCCCCcc
Confidence            9999888866788888899754 44433331111 233458999999999877889999999999999998543211   


Q ss_pred             HHHHH----------hhheeccceeeeEEEc--------CCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcC
Q 045248          169 LTFAL----------KKLTFSKKQLVPLLLI--------PKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDG  230 (240)
Q Consensus       169 ~~~~~----------~~~~~~~~~i~~~~~~--------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~  230 (240)
                      ..+.+          ................        ...+.+.+++++++++.+.+.+++++++++++++++.+.++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~  322 (331)
T cd08273         243 RSLAALGSLLARLAKLKLLPTGRRATFYYVWRDRAEDPKLFRQDLTELLDLLAKGKIRPKIAKRLPLSEVAEAHRLLESG  322 (331)
T ss_pred             ccccchhhhhhhhhhhcceeccceeEEEeechhcccCHHHHHHHHHHHHHHHHCCCccCCcceEEcHHHHHHHHHHHHcC
Confidence            11000          0011122222222210        11457889999999999988788899999999999999988


Q ss_pred             CCcccEEE
Q 045248          231 HATGKIIV  238 (240)
Q Consensus       231 ~~~gkvvl  238 (240)
                      ...||+|+
T Consensus       323 ~~~gkvv~  330 (331)
T cd08273         323 KVVGKIVL  330 (331)
T ss_pred             CCcceEEe
Confidence            88889886

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.92  E-value=2.9e-24  Score=171.81  Aligned_cols=221  Identities=28%  Similarity=0.374  Sum_probs=174.4

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      .|+|+||+.++.+.++++|+++++.+++.+++.+.+++.++.+..++     ++|++++|+|++|++|++++|+++.+|+
T Consensus        60 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~g~~vlv~g~~g~~g~~~~~~a~~~g~  134 (293)
T cd05195          60 PGAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARL-----QKGESVLIHAAAGGVGQAAIQLAQHLGA  134 (293)
T ss_pred             cCcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhcc-----CCCCEEEEecCCCHHHHHHHHHHHHcCC
Confidence            58999999999999999999999999999999999999999777888     8999999999899999999999999999


Q ss_pred             EEEEEeCc-ccHHHHHhcC--CCEEEeCCCCc--cccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchH
Q 045248           93 HVTASCGA-RNIEFVKSLG--ADEVLDYKTPD--GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSA  167 (240)
Q Consensus        93 ~v~~~~~~-~~~~~~~~~g--~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~  167 (240)
                      +|++++++ ++.+.+++.|  ++.+++..+.+  ....+.+.++++|+++|++|+..+..++++++++|+++.+|.....
T Consensus       135 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~  214 (293)
T cd05195         135 EVFATVGSEEKREFLRELGGPVDHIFSSRDLSFADGILRATGGRGVDVVLNSLSGELLRASWRCLAPFGRFVEIGKRDIL  214 (293)
T ss_pred             EEEEEeCCHHHHHHHHHhCCCcceEeecCchhHHHHHHHHhCCCCceEEEeCCCchHHHHHHHhcccCceEEEeeccccc
Confidence            99999865 7888888888  67777765433  1223344567899999999988888999999999999998854321


Q ss_pred             ---H--HHHHHhhheeccceeeeEEE---cCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEE
Q 045248          168 ---M--LTFALKKLTFSKKQLVPLLL---IPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIV  238 (240)
Q Consensus       168 ---~--~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl  238 (240)
                         .  .....+...++...+.....   ....+.+.++++++.++++++..++.+++++++++++.+..+...+|+|+
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ivv  293 (293)
T cd05195         215 SNSKLGMRPFLRNVSFSSVDLDQLARERPELLRELLREVLELLEAGVLKPLPPTVVPSASEIDAFRLMQSGKHIGKVVL  293 (293)
T ss_pred             cCCccchhhhccCCeEEEEeHHHHhhhChHHHHHHHHHHHHHHHCCCcccCCCeeechhhHHHHHHHHhcCCCCceecC
Confidence               1  11111222333333222211   01134678899999999998888889999999999999998887788764

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>smart00829 PKS_ER Enoylreductase

Probab=99.92  E-value=2.9e-24  Score=171.53  Aligned_cols=220  Identities=26%  Similarity=0.366  Sum_probs=171.8

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      .|+|++|+.++.+.++++|+++++.+++.+++.+.++|.++.+...+     .++++|+|+|++|++|++++++++.+|+
T Consensus        56 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~g~~vlv~g~~~~~g~~~~~~a~~~g~  130 (288)
T smart00829       56 PGSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARL-----RPGESVLIHAAAGGVGQAAIQLAQHLGA  130 (288)
T ss_pred             CCceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCC-----CCCCEEEEecCCcHHHHHHHHHHHHcCC
Confidence            58999999999999999999999999999999999999998777777     8999999999999999999999999999


Q ss_pred             EEEEEeC-cccHHHHHhcCC--CEEEeCCCCcc-c-cccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchH
Q 045248           93 HVTASCG-ARNIEFVKSLGA--DEVLDYKTPDG-A-ALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSA  167 (240)
Q Consensus        93 ~v~~~~~-~~~~~~~~~~g~--~~v~~~~~~~~-~-~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~  167 (240)
                      +|+++++ +++.+.++++|+  +.++++.+.+. . ..+...++++|.++|++|+.....++++++++|+++.+|.....
T Consensus       131 ~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~  210 (288)
T smart00829      131 EVFATAGSPEKRDFLRELGIPDDHIFSSRDLSFADEILRATGGRGVDVVLNSLAGEFLDASLRCLAPGGRFVEIGKRDIR  210 (288)
T ss_pred             EEEEEeCCHHHHHHHHHcCCChhheeeCCCccHHHHHHHHhCCCCcEEEEeCCCHHHHHHHHHhccCCcEEEEEcCcCCc
Confidence            9999996 478888899998  67777655442 2 22344556899999999976688899999999999999854210


Q ss_pred             -HHHHHHhhheeccceeeeEEE-----cC--CHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEE
Q 045248          168 -MLTFALKKLTFSKKQLVPLLL-----IP--KRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIV  238 (240)
Q Consensus       168 -~~~~~~~~~~~~~~~i~~~~~-----~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl  238 (240)
                       ........ ..++.++.....     .+  ..+.+.++++++.++++.+...+.+++++++++++.+..+...+|+++
T Consensus       211 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv  288 (288)
T smart00829      211 DNSQLGMAP-FRRNVSYHAVDLDALEEGPDRIRELLAEVLELFAEGVLRPLPVTVFPISDVEDAFRYMQQGKHIGKVVL  288 (288)
T ss_pred             cccccchhh-hcCCceEEEEEHHHhhcChHHHHHHHHHHHHHHHCCCccCcCceEEcHHHHHHHHHHHhcCCCcceEeC
Confidence             01111111 122233333221     01  134577888999999887766678999999999999998877788764

Enoylreductase in Polyketide synthases.

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.92  E-value=1.3e-23  Score=170.50  Aligned_cols=222  Identities=30%  Similarity=0.410  Sum_probs=177.0

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      .|++++|+.++++.++++|++++..+++.++..+.+|++++.....+     .++++++|+|++|++|++++++++..|+
T Consensus        91 ~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~vli~g~~~~~g~~~~~~a~~~g~  165 (323)
T cd08241          91 QGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARL-----QPGETVLVLGAAGGVGLAAVQLAKALGA  165 (323)
T ss_pred             CceeEEEEEcCHHHceeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCC-----CCCCEEEEEcCCchHHHHHHHHHHHhCC
Confidence            68999999999999999999999999988888999999998767777     7899999999889999999999999999


Q ss_pred             EEEEEeCc-ccHHHHHhcCCCEEEeCCCCcc--ccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchHHH
Q 045248           93 HVTASCGA-RNIEFVKSLGADEVLDYKTPDG--AALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAML  169 (240)
Q Consensus        93 ~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~--~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~  169 (240)
                      +|+.++++ ++.+.++++|++.+++....+.  .....+.+.++|.++|++|+..+..++++++++|+++.+|.......
T Consensus       166 ~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~  245 (323)
T cd08241         166 RVIAAASSEEKLALARALGADHVIDYRDPDLRERVKALTGGRGVDVVYDPVGGDVFEASLRSLAWGGRLLVIGFASGEIP  245 (323)
T ss_pred             EEEEEeCCHHHHHHHHHcCCceeeecCCccHHHHHHHHcCCCCcEEEEECccHHHHHHHHHhhccCCEEEEEccCCCCcC
Confidence            99998864 7888888999888887655442  22334455689999999998778889999999999999885322111


Q ss_pred             HHHHhhheeccceeeeEEEcC--------CHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEe
Q 045248          170 TFALKKLTFSKKQLVPLLLIP--------KRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVE  239 (240)
Q Consensus       170 ~~~~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~  239 (240)
                      .+.......++.++.+.....        ..+.+.++++++.++.+.+..+..|+++++.++++.+.++...+|++++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~  323 (323)
T cd08241         246 QIPANLLLLKNISVVGVYWGAYARREPELLRANLAELFDLLAEGKIRPHVSAVFPLEQAAEALRALADRKATGKVVLT  323 (323)
T ss_pred             cCCHHHHhhcCcEEEEEecccccchhHHHHHHHHHHHHHHHHCCCcccccceEEcHHHHHHHHHHHHhCCCCCcEEeC
Confidence            011112234555555544211        1356788999999999987788899999999999999988878898864

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.92  E-value=2.1e-23  Score=169.76  Aligned_cols=224  Identities=26%  Similarity=0.335  Sum_probs=174.7

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g   91 (240)
                      ..|++++|+.++++.++++|+++++++++.++..+.++|+++.....+     .++++++|+|++|++|++++++++..|
T Consensus        95 ~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~vli~g~~~~~g~~~~~~~~~~g  169 (328)
T cd08268          95 QYGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGL-----RPGDSVLITAASSSVGLAAIQIANAAG  169 (328)
T ss_pred             CCccceEEEEechHhcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhcCC-----CCCCEEEEecCccHHHHHHHHHHHHcC
Confidence            358999999999999999999999999999999999999999777777     789999999988999999999999999


Q ss_pred             CEEEEEeCc-ccHHHHHhcCCCEEEeCCCCcc--ccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchHH
Q 045248           92 THVTASCGA-RNIEFVKSLGADEVLDYKTPDG--AALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAM  168 (240)
Q Consensus        92 ~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~--~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~  168 (240)
                      +++++++++ ++.+.++++|.+.+++......  .......+.++|++++++|+.....++++++++|+++.+|......
T Consensus       170 ~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~  249 (328)
T cd08268         170 ATVIATTRTSEKRDALLALGAAHVIVTDEEDLVAEVLRITGGKGVDVVFDPVGGPQFAKLADALAPGGTLVVYGALSGEP  249 (328)
T ss_pred             CEEEEEcCCHHHHHHHHHcCCCEEEecCCccHHHHHHHHhCCCCceEEEECCchHhHHHHHHhhccCCEEEEEEeCCCCC
Confidence            999998864 7788888899888887655431  2233344568999999999877888999999999999987543211


Q ss_pred             HHHHHhhheeccceeeeEEEc---CC----HHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          169 LTFALKKLTFSKKQLVPLLLI---PK----RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       169 ~~~~~~~~~~~~~~i~~~~~~---~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      ..........++..+.+....   ..    ...++.+.+++..+.+.+..+..+++++++++++.+..+...+|+|+++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~  328 (328)
T cd08268         250 TPFPLKAALKKSLTFRGYSLDEITLDPEARRRAIAFILDGLASGALKPVVDRVFPFDDIVEAHRYLESGQQIGKIVVTP  328 (328)
T ss_pred             CCCchHHHhhcCCEEEEEecccccCCHHHHHHHHHHHHHHHHCCCCcCCcccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            111112123444444444321   11    2345666677778888877778899999999999999888888999874

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.91  E-value=1.7e-23  Score=167.00  Aligned_cols=210  Identities=22%  Similarity=0.241  Sum_probs=160.6

Q ss_pred             cccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCE
Q 045248           14 GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTH   93 (240)
Q Consensus        14 G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~   93 (240)
                      ++|++|+.++++.++++|+++++++++++ ..+.+||+++ ...++     .++++++|+| +|++|++++++|+.+|++
T Consensus        52 ~~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~-~~~~~-----~~g~~vlI~g-~g~vg~~~i~~a~~~g~~  123 (277)
T cd08255          52 GPHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNGV-RDAEP-----RLGERVAVVG-LGLVGLLAAQLAKAAGAR  123 (277)
T ss_pred             CCcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHH-HhcCC-----CCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Confidence            47999999999999999999999999888 7889999998 56777     8999999997 799999999999999997


Q ss_pred             -EEEEeCc-ccHHHHHhcC-CCEEEeCCCCccccccCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEeCCCchHHH
Q 045248           94 -VTASCGA-RNIEFVKSLG-ADEVLDYKTPDGAALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITPGPSAML  169 (240)
Q Consensus        94 -v~~~~~~-~~~~~~~~~g-~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~~~~~~~  169 (240)
                       |++++++ ++.+.++++| ++.+++..+      ....+.++|+++|++|. ......+++++++|+++.+|...... 
T Consensus       124 ~vi~~~~~~~~~~~~~~~g~~~~~~~~~~------~~~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~-  196 (277)
T cd08255         124 EVVGVDPDAARRELAEALGPADPVAADTA------DEIGGRGADVVIEASGSPSALETALRLLRDRGRVVLVGWYGLKP-  196 (277)
T ss_pred             cEEEECCCHHHHHHHHHcCCCccccccch------hhhcCCCCCEEEEccCChHHHHHHHHHhcCCcEEEEEeccCCCc-
Confidence             9999864 7888889999 555543321      11245689999999886 44788999999999999998643221 


Q ss_pred             HHHHhhheeccceeeeEEEc-----------CCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcC-CCcccEE
Q 045248          170 TFALKKLTFSKKQLVPLLLI-----------PKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDG-HATGKII  237 (240)
Q Consensus       170 ~~~~~~~~~~~~~i~~~~~~-----------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~-~~~gkvv  237 (240)
                      ......+..+..++.+....           ...+.++++++++.++.+++.+.+.+++++++++++.+.++ ....|++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~~  276 (277)
T cd08255         197 LLLGEEFHFKRLPIRSSQVYGIGRYDRPRRWTEARNLEEALDLLAEGRLEALITHRVPFEDAPEAYRLLFEDPPECLKVV  276 (277)
T ss_pred             cccHHHHHhccCeEEeecccccccccccccccccccHHHHHHHHHcCCccccccCccCHHHHHHHHHHHHcCCccceeee
Confidence            00111122223233332210           12357899999999999988888899999999999999877 3445765


Q ss_pred             E
Q 045248          238 V  238 (240)
Q Consensus       238 l  238 (240)
                      +
T Consensus       277 ~  277 (277)
T cd08255         277 L  277 (277)
T ss_pred             C
Confidence            3

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.91  E-value=4.9e-23  Score=168.41  Aligned_cols=229  Identities=28%  Similarity=0.316  Sum_probs=173.9

Q ss_pred             ecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHH
Q 045248            7 IDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQL   86 (240)
Q Consensus         7 ~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~   86 (240)
                      +.+....|+|++|+.++.+.++++|+++++++++.++..+.++|+++....++     +++++|+|+|++|++|++++++
T Consensus        84 V~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~vli~g~~g~~g~~~~~~  158 (337)
T cd08275          84 VMGLTRFGGYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNL-----RPGQSVLVHSAAGGVGLAAGQL  158 (337)
T ss_pred             EEEecCCCeeeeEEEecHHHeEECCCCCCHHHHhhhhHHHHHHHHHHHHhhCC-----CCCCEEEEEcCcchHHHHHHHH
Confidence            33433458999999999999999999999999999999999999998778887     8999999999889999999999


Q ss_pred             HHhC-CCEEEEEeCcccHHHHHhcCCCEEEeCCCCc-cccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248           87 AKLG-NTHVTASCGARNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus        87 a~~~-g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      ++.. +..++....+++.+.++++|++.+++....+ ...+....++++|+++|++|+.....++++++++|+++.+|..
T Consensus       159 a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~~l~~~g~~v~~g~~  238 (337)
T cd08275         159 CKTVPNVTVVGTASASKHEALKENGVTHVIDYRTQDYVEEVKKISPEGVDIVLDALGGEDTRKSYDLLKPMGRLVVYGAA  238 (337)
T ss_pred             HHHccCcEEEEeCCHHHHHHHHHcCCcEEeeCCCCcHHHHHHHHhCCCceEEEECCcHHHHHHHHHhhccCcEEEEEeec
Confidence            9998 3333333233477888889998888766544 2222222246799999999987788899999999999999854


Q ss_pred             chH---HHH-------------HHHhhheeccceeeeEEEc----CC---HHHHHHHHHHHHCCceEEecCceecchhHH
Q 045248          165 PSA---MLT-------------FALKKLTFSKKQLVPLLLI----PK---RENLDFLVKLVKEGKLKTVINSKHPLSKAE  221 (240)
Q Consensus       165 ~~~---~~~-------------~~~~~~~~~~~~i~~~~~~----~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  221 (240)
                      ...   ...             ........++.++.+....    ..   ...+.++++++.++.+.+..+..|++++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (337)
T cd08275         239 NLVTGEKRSWFKLAKKWWNRPKVDPMKLISENKSVLGFNLGWLFEERELLTEVMDKLLKLYEEGKIKPKIDSVFPFEEVG  318 (337)
T ss_pred             CCcCcccccccccccccccccccCHHHHhhcCceEEEeechhhhhChHHHHHHHHHHHHHHHCCCCCCceeeEEcHHHHH
Confidence            311   010             0112233455555554321    11   234778889999999887777899999999


Q ss_pred             HHHHHHHcCCCcccEEEeC
Q 045248          222 DAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       222 ~a~~~~~~~~~~gkvvl~~  240 (240)
                      ++++.+.++...+|+++++
T Consensus       319 ~~~~~~~~~~~~~kvv~~~  337 (337)
T cd08275         319 EAMRRLQSRKNIGKVVLTP  337 (337)
T ss_pred             HHHHHHHcCCCcceEEEeC
Confidence            9999999888889999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=99.91  E-value=3.7e-23  Score=167.24  Aligned_cols=185  Identities=20%  Similarity=0.288  Sum_probs=150.7

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g   91 (240)
                      ..|+|++|++++++.++++|+++++++++ ++..+.++|+++.....+     +++++|+|.| +|++|.+++|+|+.+|
T Consensus       116 ~~g~~~~~~~v~~~~~~~lp~~~~~~~aa-~~~~~~~a~~~l~~~~~~-----~~g~~vlI~g-~g~~g~~~~~la~~~G  188 (306)
T cd08258         116 ADGGFAEYVLVPEESLHELPENLSLEAAA-LTEPLAVAVHAVAERSGI-----RPGDTVVVFG-PGPIGLLAAQVAKLQG  188 (306)
T ss_pred             CCCceEEEEEcchHHeEECcCCCCHHHHH-hhchHHHHHHHHHHhcCC-----CCCCEEEEEC-CCHHHHHHHHHHHHcC
Confidence            46999999999999999999999999887 666777999998788888     8999999977 8999999999999999


Q ss_pred             CEEEEEeC--c-ccHHHHHhcCCCEEEeCCCCcc-c-cccCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEeCCCc
Q 045248           92 THVTASCG--A-RNIEFVKSLGADEVLDYKTPDG-A-ALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus        92 ~~v~~~~~--~-~~~~~~~~~g~~~v~~~~~~~~-~-~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~~~  165 (240)
                      ++|+++..  + ++.+.++++|++.+ ++...+. . ......+.++|+++|++|+ ..+...+++++++|+++.+|...
T Consensus       189 ~~v~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~  267 (306)
T cd08258         189 ATVVVVGTEKDEVRLDVAKELGADAV-NGGEEDLAELVNEITDGDGADVVIECSGAVPALEQALELLRKGGRIVQVGIFG  267 (306)
T ss_pred             CEEEEECCCCCHHHHHHHHHhCCccc-CCCcCCHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccC
Confidence            99887743  3 46778889999877 6655442 2 2233456789999999986 45788999999999999998754


Q ss_pred             hHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCC
Q 045248          166 SAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEG  205 (240)
Q Consensus       166 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  205 (240)
                      .....++...+.++++++.+++. .+.++++++++++++|
T Consensus       268 ~~~~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~~~~~~  306 (306)
T cd08258         268 PLAASIDVERIIQKELSVIGSRS-STPASWETALRLLASG  306 (306)
T ss_pred             CCCcccCHHHHhhcCcEEEEEec-CchHhHHHHHHHHhcC
Confidence            22344455666789999999885 6788899999999875

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.90  E-value=9.1e-23  Score=161.76  Aligned_cols=193  Identities=28%  Similarity=0.343  Sum_probs=153.5

Q ss_pred             cccceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHH
Q 045248            2 CNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGH   81 (240)
Q Consensus         2 c~~~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~   81 (240)
                      |....+.+....|+|++|+.++++.++++|+++++++++.++..+.+||+++.....+     .++++|+|+|+++ +|+
T Consensus        75 ~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~-----~~~~~vli~g~~~-~G~  148 (271)
T cd05188          75 CPGGGILGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVL-----KPGDTVLVLGAGG-VGL  148 (271)
T ss_pred             CCCCCEeccccCCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCC-----CCCCEEEEECCCH-HHH
Confidence            4444455556689999999999999999999999999999999999999999777766     7899999999655 999


Q ss_pred             HHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCcc-ccccCCCCCcccEEEeCCCC-CCccccccCCCCCcEE
Q 045248           82 YAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDG-AALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKV  158 (240)
Q Consensus        82 ~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~-~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~i  158 (240)
                      +++++++..|.+|++++++ ++.+.++++|++.+++..+.+. ..+....+.++|+++|++|. ..+..++++++++|++
T Consensus       149 ~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~  228 (271)
T cd05188         149 LAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPETLAQALRLLRPGGRI  228 (271)
T ss_pred             HHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHhcccCCEE
Confidence            9999999999999999975 7888889999888887665442 21114456789999999998 6688899999999999


Q ss_pred             EEeCCCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHH
Q 045248          159 IDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKL  201 (240)
Q Consensus       159 v~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  201 (240)
                      +.++................++.++.++.. ....++++++++
T Consensus       229 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  270 (271)
T cd05188         229 VVVGGTSGGPPLDDLRRLLFKELTIIGSTG-GTREDFEEALDL  270 (271)
T ss_pred             EEEccCCCCCCcccHHHHHhcceEEEEeec-CCHHHHHHHHhh
Confidence            999865432222223345677888888764 566677777765

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=99.78  E-value=7.1e-20  Score=129.66  Aligned_cols=126  Identities=27%  Similarity=0.362  Sum_probs=108.4

Q ss_pred             hHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCc-ccc-ccCCCCCcccEEEeCCCC-CCccccccCCC
Q 045248           78 GVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPD-GAA-LKSPSGRKYDAVIHCATG-IPWSTFEPNLG  153 (240)
Q Consensus        78 ~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~-~~~-~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~  153 (240)
                      |+|++++|+|+++|++|++++++ ++++.++++|++.++++++.+ ... .+.+++.++|+||||+|. ..++.++++++
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~   80 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKLLR   80 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHHEE
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCcHHHHHHHHHHhc
Confidence            68999999999999999999975 799999999999999998876 333 345566799999999995 66999999999


Q ss_pred             CCcEEEEeCCCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHC
Q 045248          154 TNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKE  204 (240)
Q Consensus       154 ~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  204 (240)
                      ++|+++.+|.......+++...+.++++++.+++. .++++++++++++++
T Consensus        81 ~~G~~v~vg~~~~~~~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~~la~  130 (130)
T PF00107_consen   81 PGGRIVVVGVYGGDPISFNLMNLMFKEITIRGSWG-GSPEDFQEALQLLAQ  130 (130)
T ss_dssp             EEEEEEEESSTSTSEEEEEHHHHHHTTEEEEEESS-GGHHHHHHHHHHHH-
T ss_pred             cCCEEEEEEccCCCCCCCCHHHHHhCCcEEEEEcc-CCHHHHHHHHHHhcC
Confidence            99999999987655666778888999999999875 568999999999864

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A

Probab=99.71  E-value=1.3e-17  Score=117.46  Aligned_cols=120  Identities=34%  Similarity=0.458  Sum_probs=80.0

Q ss_pred             cCCCEEEeCCCCccccccCCCCCcccEEEeCCC--CCC-ccccccCCCCCcEEEEeCCCchHHHHHHHhhheeccceeee
Q 045248          109 LGADEVLDYKTPDGAALKSPSGRKYDAVIHCAT--GIP-WSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVP  185 (240)
Q Consensus       109 ~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g--~~~-~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~  185 (240)
                      ||+++++|++..+.     ..+.+||+|||++|  .+. +..++++| ++|+++.++. .-........   ....+...
T Consensus         1 LGAd~vidy~~~~~-----~~~~~~D~ViD~~g~~~~~~~~~~~~~l-~~G~~v~i~~-~~~~~~~~~~---~~~~~~~~   70 (127)
T PF13602_consen    1 LGADEVIDYRDTDF-----AGPGGVDVVIDTVGQTGESLLDASRKLL-PGGRVVSIGG-DLPSFARRLK---GRSIRYSF   70 (127)
T ss_dssp             CT-SEEEETTCSHH-----HTTS-EEEEEESS-CCHHHCGGGCCCTE-EEEEEEEE-S-HHHHHHHHHH---CHHCEEEC
T ss_pred             CCcCEEecCCCccc-----cCCCCceEEEECCCCccHHHHHHHHHHC-CCCEEEEECC-cccchhhhhc---ccceEEEE
Confidence            69999999985444     45689999999999  544 47888999 9999999985 1111111111   11111111


Q ss_pred             EE-EcC---CHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEE
Q 045248          186 LL-LIP---KRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIV  238 (240)
Q Consensus       186 ~~-~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl  238 (240)
                      .. ..+   ..+.++++.+++++|++++.+.++||++++++|++.+.+++..||+||
T Consensus        71 ~~~~~~~~~~~~~l~~l~~l~~~G~l~~~i~~~f~l~~~~~A~~~l~~~~~~GKvVl  127 (127)
T PF13602_consen   71 LFSVDPNAIRAEALEELAELVAEGKLKPPIDRVFPLEEAPEAHERLESGHARGKVVL  127 (127)
T ss_dssp             CC-H--HHHHHHHHHHHHHHHHTTSS---EEEEEEGGGHHHHHHHHHCT--SSEEEE
T ss_pred             EEecCCCchHHHHHHHHHHHHHCCCeEEeeccEECHHHHHHHHHHHHhCCCCCeEeC
Confidence            11 011   345699999999999999999999999999999999999999999996

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.56  E-value=2.9e-14  Score=117.77  Aligned_cols=161  Identities=13%  Similarity=0.046  Sum_probs=123.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      -+|++|+|.| .|++|+.+++.++.+|++|+++.. +.|.+.++++|++.+ +..    ..+     .++|+|++++|..
T Consensus       200 l~GktVvViG-~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~----e~v-----~~aDVVI~atG~~  268 (413)
T cd00401         200 IAGKVAVVAG-YGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TME----EAV-----KEGDIFVTTTGNK  268 (413)
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHH----HHH-----cCCCEEEECCCCH
Confidence            4899999999 999999999999999999999885 478899999998533 211    111     3589999999975


Q ss_pred             C-cccc-ccCCCCCcEEEEeCCCchHHHHHHHhhheeccceeeeEEEcCCHHHHH--HHHHHHHCCce---EEecCce--
Q 045248          144 P-WSTF-EPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLD--FLVKLVKEGKL---KTVINSK--  214 (240)
Q Consensus       144 ~-~~~~-~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~i---~~~~~~~--  214 (240)
                      . +... ++.++++|+++.+|...   .+++...+..++.++.++........++  +.++++++|++   .+.++|.  
T Consensus       269 ~~i~~~~l~~mk~GgilvnvG~~~---~eId~~~L~~~el~i~g~~~~~~~~~~~~g~aI~LLa~Grlvnl~~~~gH~~~  345 (413)
T cd00401         269 DIITGEHFEQMKDGAIVCNIGHFD---VEIDVKGLKENAVEVVNIKPQVDRYELPDGRRIILLAEGRLVNLGCATGHPSF  345 (413)
T ss_pred             HHHHHHHHhcCCCCcEEEEeCCCC---CccCHHHHHhhccEEEEccCCcceEEcCCcchhhhhhCcCCCCCcccCCCccc
Confidence            5 6655 89999999999999652   3455666667788888775322222456  79999999988   4577788  


Q ss_pred             ---ecch-hHHHHHHHHHcCCC-cccEEEe
Q 045248          215 ---HPLS-KAEDAWAESIDGHA-TGKIIVE  239 (240)
Q Consensus       215 ---~~~~-~~~~a~~~~~~~~~-~gkvvl~  239 (240)
                         ++|+ ++.++++.+.+++. .-|+++.
T Consensus       346 vmd~sf~~q~l~a~~l~~~~~~~~~kV~~~  375 (413)
T cd00401         346 VMSNSFTNQVLAQIELWTNRDKYEVGVYFL  375 (413)
T ss_pred             eechhHHHHHHHHHHHHhcCCcCCCcEEEC
Confidence               8999 99999999987653 2466654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=99.45  E-value=9.6e-13  Score=111.52  Aligned_cols=142  Identities=18%  Similarity=0.159  Sum_probs=104.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHhcCCCEE-EeCCCCcc--c--c-----------ccC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEV-LDYKTPDG--A--A-----------LKS  127 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~v-~~~~~~~~--~--~-----------~~~  127 (240)
                      .++++|+|+| +|++|+++++.|+.+|++|++++. +++++.++++|++.+ ++..+.+.  .  .           .+.
T Consensus       163 ~pg~kVlViG-aG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~  241 (509)
T PRK09424        163 VPPAKVLVIG-AGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL  241 (509)
T ss_pred             cCCCEEEEEC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence            5899999999 999999999999999999999995 589999999999844 55433210  0  0           000


Q ss_pred             CC--CCcccEEEeCCCCC------C-ccccccCCCCCcEEEEeCCCchH--HHHHHHhhhee-ccceeeeEEEcCCHHHH
Q 045248          128 PS--GRKYDAVIHCATGI------P-WSTFEPNLGTNGKVIDITPGPSA--MLTFALKKLTF-SKKQLVPLLLIPKRENL  195 (240)
Q Consensus       128 ~~--~~~~d~v~d~~g~~------~-~~~~~~~l~~~G~iv~~g~~~~~--~~~~~~~~~~~-~~~~i~~~~~~~~~~~~  195 (240)
                      ..  ..++|++|+|+|.+      . .+++++.++++|+++.++.....  ..+.+...+.. +++++.+.+..+ .+..
T Consensus       242 ~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~Gv~n~P-~~~p  320 (509)
T PRK09424        242 FAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGGNCELTVPGEVVVTDNGVTIIGYTDLP-SRLP  320 (509)
T ss_pred             HHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCCCcccccCccceEeECCEEEEEeCCCc-hhHH
Confidence            01  15799999999952      2 38899999999999999864222  23333445554 788999876433 3444


Q ss_pred             HHHHHHHHCCceE
Q 045248          196 DFLVKLVKEGKLK  208 (240)
Q Consensus       196 ~~~~~~~~~~~i~  208 (240)
                      .++.+++.++.+.
T Consensus       321 ~~As~lla~~~i~  333 (509)
T PRK09424        321 TQSSQLYGTNLVN  333 (509)
T ss_pred             HHHHHHHHhCCcc
Confidence            4699999998875

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.66  E-value=5.2e-08  Score=77.58  Aligned_cols=164  Identities=13%  Similarity=0.094  Sum_probs=93.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCC--EEEEEeC-cccHHHHHh----cCCCEEEeCCCCccccccCCCCCcccEEE
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNT--HVTASCG-ARNIEFVKS----LGADEVLDYKTPDGAALKSPSGRKYDAVI  137 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~~-~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~~~~~d~v~  137 (240)
                      +++++||.+| +|+ |..++++++..|.  +|++++. ++..+.+++    .|...+ .....+...+. .....||+|+
T Consensus        76 ~~g~~VLDiG-~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v-~~~~~d~~~l~-~~~~~fD~Vi  151 (272)
T PRK11873         76 KPGETVLDLG-SGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNV-EFRLGEIEALP-VADNSVDVII  151 (272)
T ss_pred             CCCCEEEEeC-CCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCE-EEEEcchhhCC-CCCCceeEEE
Confidence            7999999999 677 8888888887775  7999985 466666654    343222 11111111111 1235799998


Q ss_pred             eCCC-----C--CCccccccCCCCCcEEEEeCCCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCc---e
Q 045248          138 HCAT-----G--IPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGK---L  207 (240)
Q Consensus       138 d~~g-----~--~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---i  207 (240)
                      ....     .  ..+..+.+.|+++|+++..+...........    .+...+.+... .......++.+++++..   +
T Consensus       152 ~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~e~~~~l~~aGf~~v  226 (272)
T PRK11873        152 SNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEI----RNDAELYAGCV-AGALQEEEYLAMLAEAGFVDI  226 (272)
T ss_pred             EcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHH----HHhHHHHhccc-cCCCCHHHHHHHHHHCCCCce
Confidence            5432     1  2378899999999999887643221111000    11111111111 11122344556666532   3


Q ss_pred             EEecCceecchhHHHHHHHH--HcCCCcccEE
Q 045248          208 KTVINSKHPLSKAEDAWAES--IDGHATGKII  237 (240)
Q Consensus       208 ~~~~~~~~~~~~~~~a~~~~--~~~~~~gkvv  237 (240)
                      .......+++++..++++.+  .++...++.+
T Consensus       227 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  258 (272)
T PRK11873        227 TIQPKREYRIPDAREFLEDWGIAPGRQLDGYI  258 (272)
T ss_pred             EEEeccceecccHHHHHHHhccccccccCceE
Confidence            34455678899999999888  5555445444

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.44  E-value=5.7e-07  Score=76.60  Aligned_cols=99  Identities=21%  Similarity=0.225  Sum_probs=73.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHhcCCCEE-EeCCCCc---------------cccccC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEV-LDYKTPD---------------GAALKS  127 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~v-~~~~~~~---------------~~~~~~  127 (240)
                      .++.+++|.| +|.+|+++++.++.+|++|++.+. +++++.++++|++.+ ++..+..               ..+.+.
T Consensus       162 vp~akVlViG-aG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~  240 (511)
T TIGR00561       162 VPPAKVLVIG-AGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL  240 (511)
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence            4679999999 899999999999999999988885 478999999998753 2321100               000111


Q ss_pred             C--CCCcccEEEeCC---CC--C--CccccccCCCCCcEEEEeCCC
Q 045248          128 P--SGRKYDAVIHCA---TG--I--PWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       128 ~--~~~~~d~v~d~~---g~--~--~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      .  ...++|++|+|+   |.  +  ..+..++.+++|+.|+.+...
T Consensus       241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d  286 (511)
T TIGR00561       241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAE  286 (511)
T ss_pred             HHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeC
Confidence            1  135699999999   64  2  256778999999999988643

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.44  E-value=1.9e-06  Score=72.11  Aligned_cols=103  Identities=13%  Similarity=0.023  Sum_probs=75.4

Q ss_pred             HHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCcccccc
Q 045248           48 TAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALK  126 (240)
Q Consensus        48 ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~  126 (240)
                      .+|.++.+..++.    -.|++|+|+| .|.+|..+++.++.+|++|++++.+ .+...+...|.. +.+.    .... 
T Consensus       197 s~~~ai~rat~~~----l~Gk~VlViG-~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~-v~~l----~eal-  265 (425)
T PRK05476        197 SLLDGIKRATNVL----IAGKVVVVAG-YGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFR-VMTM----EEAA-  265 (425)
T ss_pred             hhHHHHHHhccCC----CCCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCE-ecCH----HHHH-
Confidence            4455554443442    3899999999 8999999999999999999998864 565666666754 2211    1111 


Q ss_pred             CCCCCcccEEEeCCCCCC-cc-ccccCCCCCcEEEEeCCCc
Q 045248          127 SPSGRKYDAVIHCATGIP-WS-TFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus       127 ~~~~~~~d~v~d~~g~~~-~~-~~~~~l~~~G~iv~~g~~~  165 (240)
                          .++|++++++|... +. ..+..+++++.++.+|...
T Consensus       266 ----~~aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG~~d  302 (425)
T PRK05476        266 ----ELGDIFVTATGNKDVITAEHMEAMKDGAILANIGHFD  302 (425)
T ss_pred             ----hCCCEEEECCCCHHHHHHHHHhcCCCCCEEEEcCCCC
Confidence                36899999999754 54 5788999999999998654

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.26  E-value=6.1e-06  Score=68.65  Aligned_cols=90  Identities=16%  Similarity=0.003  Sum_probs=69.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      -.|++|+|+| .|.+|+.+++.++.+|++|+++.. +.+...++..|+. +.+.    ...+     .+.|++|+++|..
T Consensus       193 l~Gk~VvViG-~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~-v~~l----eeal-----~~aDVVItaTG~~  261 (406)
T TIGR00936       193 IAGKTVVVAG-YGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFR-VMTM----EEAA-----KIGDIFITATGNK  261 (406)
T ss_pred             CCcCEEEEEC-CCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCE-eCCH----HHHH-----hcCCEEEECCCCH
Confidence            4899999999 999999999999999999999885 4666666777763 3221    1111     3579999999975


Q ss_pred             C-cc-ccccCCCCCcEEEEeCCCc
Q 045248          144 P-WS-TFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus       144 ~-~~-~~~~~l~~~G~iv~~g~~~  165 (240)
                      . +. ..+..+++++.++.+|...
T Consensus       262 ~vI~~~~~~~mK~GailiN~G~~~  285 (406)
T TIGR00936       262 DVIRGEHFENMKDGAIVANIGHFD  285 (406)
T ss_pred             HHHHHHHHhcCCCCcEEEEECCCC
Confidence            5 54 4788999999999998653

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=98.21  E-value=5.1e-06  Score=72.96  Aligned_cols=95  Identities=19%  Similarity=0.149  Sum_probs=66.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc----------------------ccHHHHHhcCCCEEEeCCC-Cc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA----------------------RNIEFVKSLGADEVLDYKT-PD  121 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~----------------------~~~~~~~~~g~~~v~~~~~-~~  121 (240)
                      ++|++|+|+| +|+.|+.+++.++..|++|++++..                      .+.+.++++|++..++... .+
T Consensus       135 ~~g~~V~VIG-aGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~  213 (564)
T PRK12771        135 DTGKRVAVIG-GGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGED  213 (564)
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCc
Confidence            6899999999 8999999999999999998888731                      2456678899876665432 11


Q ss_pred             cccccCCCCCcccEEEeCCCCCC-ccccccCCCCCcEEEEeC
Q 045248          122 GAALKSPSGRKYDAVIHCATGIP-WSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       122 ~~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~g  162 (240)
                      .. .... ..++|+||+++|... ....+......|.+..++
T Consensus       214 ~~-~~~~-~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~  253 (564)
T PRK12771        214 IT-LEQL-EGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVD  253 (564)
T ss_pred             CC-HHHH-HhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHH
Confidence            11 1111 246999999999753 444555556666665443

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.18  E-value=1.9e-05  Score=63.50  Aligned_cols=93  Identities=15%  Similarity=0.233  Sum_probs=70.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP  144 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~  144 (240)
                      .+++++|+| .|.+|+.+++.++.+|++|++..+. ++.+.++++|...+ ...+. ...+     .++|+||+|++...
T Consensus       151 ~g~kvlViG-~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~-~~~~l-~~~l-----~~aDiVI~t~p~~~  222 (296)
T PRK08306        151 HGSNVLVLG-FGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPF-HLSEL-AEEV-----GKIDIIFNTIPALV  222 (296)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeee-cHHHH-HHHh-----CCCCEEEECCChhh
Confidence            689999999 8999999999999999999999865 67777888886533 21110 1111     35899999997543


Q ss_pred             -ccccccCCCCCcEEEEeCCCch
Q 045248          145 -WSTFEPNLGTNGKVIDITPGPS  166 (240)
Q Consensus       145 -~~~~~~~l~~~G~iv~~g~~~~  166 (240)
                       -...++.+++++.++.+...+.
T Consensus       223 i~~~~l~~~~~g~vIIDla~~pg  245 (296)
T PRK08306        223 LTKEVLSKMPPEALIIDLASKPG  245 (296)
T ss_pred             hhHHHHHcCCCCcEEEEEccCCC
Confidence             3466678899999998886543

>PLN02494 adenosylhomocysteinase

Probab=98.14  E-value=2.2e-05  Score=66.12  Aligned_cols=89  Identities=13%  Similarity=0.022  Sum_probs=70.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      -.|++++|+| .|.+|..+++.++.+|++|+++..+ .+...+...|... ++.    ...+     ...|+++++.|..
T Consensus       252 LaGKtVvViG-yG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~v-v~l----eEal-----~~ADVVI~tTGt~  320 (477)
T PLN02494        252 IAGKVAVICG-YGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQV-LTL----EDVV-----SEADIFVTTTGNK  320 (477)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCee-ccH----HHHH-----hhCCEEEECCCCc
Confidence            3699999999 9999999999999999999998865 5656677777652 211    1112     3479999999975


Q ss_pred             C--ccccccCCCCCcEEEEeCCC
Q 045248          144 P--WSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       144 ~--~~~~~~~l~~~G~iv~~g~~  164 (240)
                      .  ....++.+++++.++.+|..
T Consensus       321 ~vI~~e~L~~MK~GAiLiNvGr~  343 (477)
T PLN02494        321 DIIMVDHMRKMKNNAIVCNIGHF  343 (477)
T ss_pred             cchHHHHHhcCCCCCEEEEcCCC
Confidence            4  37899999999999999974

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=98.02  E-value=7.8e-05  Score=63.02  Aligned_cols=90  Identities=13%  Similarity=0.012  Sum_probs=68.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      -.|++++|+| .|.+|..+++.++.+|++|+++.++ .+...+...|+.. .+.    ...+     ...|+|+.+.|..
T Consensus       252 LaGKtVgVIG-~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~l----eell-----~~ADIVI~atGt~  320 (476)
T PTZ00075        252 IAGKTVVVCG-YGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTL----EDVV-----ETADIFVTATGNK  320 (476)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccH----HHHH-----hcCCEEEECCCcc
Confidence            4899999999 9999999999999999999988754 4444444556532 211    1111     3589999999875


Q ss_pred             C-cc-ccccCCCCCcEEEEeCCCc
Q 045248          144 P-WS-TFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus       144 ~-~~-~~~~~l~~~G~iv~~g~~~  165 (240)
                      . +. ..+..+++++.++.+|...
T Consensus       321 ~iI~~e~~~~MKpGAiLINvGr~d  344 (476)
T PTZ00075        321 DIITLEHMRRMKNNAIVGNIGHFD  344 (476)
T ss_pred             cccCHHHHhccCCCcEEEEcCCCc
Confidence            4 43 7889999999999999764

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.84  E-value=3e-05  Score=62.97  Aligned_cols=109  Identities=18%  Similarity=0.226  Sum_probs=71.6

Q ss_pred             CceeeCCCCCChhhhhhh-chHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-c
Q 045248           25 SSTVARPSEVSAAEGSGL-PVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-R  101 (240)
Q Consensus        25 ~~~~~ip~~~~~~~aa~~-~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~  101 (240)
                      ..++++|+.+..+.++.. +.+  +++.++. .+...++. -++.+|+|+| +|.+|..+++.++..|. +|+++.++ +
T Consensus       139 ~~a~~~~k~vr~et~i~~~~~s--v~~~Av~-~a~~~~~~-l~~~~V~ViG-aG~iG~~~a~~L~~~g~~~V~v~~r~~~  213 (311)
T cd05213         139 QKAIKVGKRVRTETGISRGAVS--ISSAAVE-LAEKIFGN-LKGKKVLVIG-AGEMGELAAKHLAAKGVAEITIANRTYE  213 (311)
T ss_pred             HHHHHHHHHHhhhcCCCCCCcC--HHHHHHH-HHHHHhCC-ccCCEEEEEC-cHHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence            356788888887877665 333  5555552 22211000 2789999999 89999999999998887 77777765 4


Q ss_pred             c-HHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCCc
Q 045248          102 N-IEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPW  145 (240)
Q Consensus       102 ~-~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~  145 (240)
                      + .+.++++|.. +++..+. ...+     ...|+||.+++.+..
T Consensus       214 ra~~la~~~g~~-~~~~~~~-~~~l-----~~aDvVi~at~~~~~  251 (311)
T cd05213         214 RAEELAKELGGN-AVPLDEL-LELL-----NEADVVISATGAPHY  251 (311)
T ss_pred             HHHHHHHHcCCe-EEeHHHH-HHHH-----hcCCEEEECCCCCch
Confidence            4 4677888873 3332210 1111     347999999997543

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.76  E-value=0.00018  Score=59.79  Aligned_cols=95  Identities=13%  Similarity=0.161  Sum_probs=63.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH-hcCCCEEEeCCCCccccccCCCCCcccEEEeCC---
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK-SLGADEVLDYKTPDGAALKSPSGRKYDAVIHCA---  140 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~-~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~---  140 (240)
                      ++.+|+|+| +|.+|+.+++.++.+|++|++++++ ++.+.+. .++........+.. ...+..  .++|++|+++   
T Consensus       166 ~~~~VlViG-aG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~-~l~~~l--~~aDvVI~a~~~~  241 (370)
T TIGR00518       166 EPGDVTIIG-GGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAY-EIEDAV--KRADLLIGAVLIP  241 (370)
T ss_pred             CCceEEEEc-CCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHH-HHHHHH--ccCCEEEEccccC
Confidence            456699999 8999999999999999998888864 5666554 45543222221111 111111  3589999998   


Q ss_pred             CC--CC--ccccccCCCCCcEEEEeCCC
Q 045248          141 TG--IP--WSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       141 g~--~~--~~~~~~~l~~~G~iv~~g~~  164 (240)
                      |.  +.  ....++.+++++.++.++..
T Consensus       242 g~~~p~lit~~~l~~mk~g~vIvDva~d  269 (370)
T TIGR00518       242 GAKAPKLVSNSLVAQMKPGAVIVDVAID  269 (370)
T ss_pred             CCCCCcCcCHHHHhcCCCCCEEEEEecC
Confidence            33  21  35677788999999988743

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=97.76  E-value=0.00042  Score=54.52  Aligned_cols=129  Identities=17%  Similarity=0.129  Sum_probs=79.1

Q ss_pred             ccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC-E
Q 045248           15 GLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT-H   93 (240)
Q Consensus        15 ~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~   93 (240)
                      +|.+|.. +...++++++++++..+.--. +. .+...+...  .     .++++||-+| +|. |..++.+++ .|+ +
T Consensus        78 ~~~~~~~-~~~~~i~i~p~~afgtg~h~t-t~-~~l~~l~~~--~-----~~~~~VLDiG-cGs-G~l~i~~~~-~g~~~  144 (250)
T PRK00517         78 SWEDPPD-PDEINIELDPGMAFGTGTHPT-TR-LCLEALEKL--V-----LPGKTVLDVG-CGS-GILAIAAAK-LGAKK  144 (250)
T ss_pred             CCcCCCC-CCeEEEEECCCCccCCCCCHH-HH-HHHHHHHhh--c-----CCCCEEEEeC-CcH-HHHHHHHHH-cCCCe
Confidence            5556544 667788899888887654222 21 223333222  2     5889999999 676 877776554 576 6


Q ss_pred             EEEEeCc-ccHHHHHhc----CCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC----ccccccCCCCCcEEEEeCCC
Q 045248           94 VTASCGA-RNIEFVKSL----GADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP----WSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus        94 v~~~~~~-~~~~~~~~~----g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~----~~~~~~~l~~~G~iv~~g~~  164 (240)
                      |++++.+ ...+.+++.    +....+.        +.. ....||+|+-......    +..+.+.|+++|.++..|..
T Consensus       145 v~giDis~~~l~~A~~n~~~~~~~~~~~--------~~~-~~~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~  215 (250)
T PRK00517        145 VLAVDIDPQAVEAARENAELNGVELNVY--------LPQ-GDLKADVIVANILANPLLELAPDLARLLKPGGRLILSGIL  215 (250)
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCceEE--------Ecc-CCCCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence            9999954 555555432    2211111        000 1115999987665432    56778889999999988754


Q ss_pred             c
Q 045248          165 P  165 (240)
Q Consensus       165 ~  165 (240)
                      .
T Consensus       216 ~  216 (250)
T PRK00517        216 E  216 (250)
T ss_pred             H
Confidence            3

>PRK08324 short chain dehydrogenase; Validated

Probab=97.75  E-value=3e-05  Score=69.71  Aligned_cols=112  Identities=18%  Similarity=0.097  Sum_probs=69.1

Q ss_pred             cccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCE
Q 045248           14 GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTH   93 (240)
Q Consensus        14 G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~   93 (240)
                      .++++|..+++..++.+ +..+.+++...            +....   ..-+|+++||+||+|++|..+++.+...|++
T Consensus       385 ~~~~~~~~l~~~~~f~i-~~~~~e~a~l~------------~~~~~---~~l~gk~vLVTGasggIG~~la~~L~~~Ga~  448 (681)
T PRK08324        385 EAVGRYEPLSEQEAFDI-EYWSLEQAKLQ------------RMPKP---KPLAGKVALVTGAAGGIGKATAKRLAAEGAC  448 (681)
T ss_pred             hhcCCccCCChhhhcce-eeehhhhhhhh------------cCCCC---cCCCCCEEEEecCCCHHHHHHHHHHHHCcCE
Confidence            45667777777777766 55666665421            11011   0036899999999999999999999999999


Q ss_pred             EEEEeCc-ccHHHH-HhcCC--C-EEE--eCCCCc-c-ccccC--CCCCcccEEEeCCC
Q 045248           94 VTASCGA-RNIEFV-KSLGA--D-EVL--DYKTPD-G-AALKS--PSGRKYDAVIHCAT  141 (240)
Q Consensus        94 v~~~~~~-~~~~~~-~~~g~--~-~v~--~~~~~~-~-~~~~~--~~~~~~d~v~d~~g  141 (240)
                      |+.++++ ++.+.+ ++++.  . ..+  |..+.. . ..+..  ...+++|++|+++|
T Consensus       449 Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iDvvI~~AG  507 (681)
T PRK08324        449 VVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGVDIVVSNAG  507 (681)
T ss_pred             EEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            9999865 444433 33442  1 122  322222 1 11111  11247999999998

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.69  E-value=0.00037  Score=52.28  Aligned_cols=78  Identities=22%  Similarity=0.303  Sum_probs=56.7

Q ss_pred             CCCCeEEEEcC-CchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH-hcCCC-EEEeCCCCc-----cccccCCCCCcccE
Q 045248           65 GQQKNILVTAA-SGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK-SLGAD-EVLDYKTPD-----GAALKSPSGRKYDA  135 (240)
Q Consensus        65 ~~g~~vlV~G~-~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~-~~g~~-~v~~~~~~~-----~~~~~~~~~~~~d~  135 (240)
                      ...+.|||+|+ .||+|.++..-...-|+.|+++++. +++..+. ++|.. .-+|..+++     ...++....++.|+
T Consensus         5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~   84 (289)
T KOG1209|consen    5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDL   84 (289)
T ss_pred             cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceEE
Confidence            35678899875 6899999999999999999999986 7777775 77742 223444433     12334445678999


Q ss_pred             EEeCCCC
Q 045248          136 VIHCATG  142 (240)
Q Consensus       136 v~d~~g~  142 (240)
                      .++..|.
T Consensus        85 L~NNAG~   91 (289)
T KOG1209|consen   85 LYNNAGQ   91 (289)
T ss_pred             EEcCCCC
Confidence            9998884

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=97.64  E-value=0.00018  Score=56.41  Aligned_cols=77  Identities=21%  Similarity=0.296  Sum_probs=54.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH-h----cCCC-EEE--eCCCCc--cccccC--CCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK-S----LGAD-EVL--DYKTPD--GAALKS--PSGR  131 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~-~----~g~~-~v~--~~~~~~--~~~~~~--~~~~  131 (240)
                      ..+.+++|+||++|+|...+..+...|++++.+.|+ ++++.+. +    .|.. .++  |..+.+  .....+  ..+.
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~   83 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGG   83 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCC
Confidence            578999999999999999999999999999999986 6765552 2    3322 233  223332  112222  2335


Q ss_pred             cccEEEeCCC
Q 045248          132 KYDAVIHCAT  141 (240)
Q Consensus       132 ~~d~v~d~~g  141 (240)
                      .+|+.++++|
T Consensus        84 ~IdvLVNNAG   93 (265)
T COG0300          84 PIDVLVNNAG   93 (265)
T ss_pred             cccEEEECCC
Confidence            7999999998

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.62  E-value=0.00033  Score=54.40  Aligned_cols=77  Identities=13%  Similarity=0.188  Sum_probs=49.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-Hh---cCCCEEEeC--CCCc--cccccCC--CCCccc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KS---LGADEVLDY--KTPD--GAALKSP--SGRKYD  134 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~---~g~~~v~~~--~~~~--~~~~~~~--~~~~~d  134 (240)
                      ++++++|+|++|++|..+++.+...|++|+.++++ ++.+.+ ++   .+..+.+..  .+.+  ....+..  .-.++|
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   83 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAID   83 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            57899999999999999999999999999999975 444433 22   222233322  2211  1111111  124689


Q ss_pred             EEEeCCCC
Q 045248          135 AVIHCATG  142 (240)
Q Consensus       135 ~v~d~~g~  142 (240)
                      .++.+.|.
T Consensus        84 ~ii~~ag~   91 (238)
T PRK05786         84 GLVVTVGG   91 (238)
T ss_pred             EEEEcCCC
Confidence            99999874

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.62  E-value=0.0003  Score=58.72  Aligned_cols=112  Identities=13%  Similarity=0.078  Sum_probs=73.0

Q ss_pred             hhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHhcCCCEEEeCC
Q 045248           40 SGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYK  118 (240)
Q Consensus        40 a~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~v~~~~  118 (240)
                      ..+..+....+..+.+..++     +++.+||-+| + |.|..+..+++..|++|++++. ++..+.+++......+...
T Consensus       146 ~~L~~Aq~~k~~~l~~~l~l-----~~g~rVLDIG-c-G~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~  218 (383)
T PRK11705        146 DTLEEAQEAKLDLICRKLQL-----KPGMRVLDIG-C-GWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIR  218 (383)
T ss_pred             CCHHHHHHHHHHHHHHHhCC-----CCCCEEEEeC-C-CccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEE
Confidence            34444445556666677777     8999999999 4 5777888899988999999995 4777777654322112111


Q ss_pred             CCccccccCCCCCcccEEEe-----CCCCC----CccccccCCCCCcEEEEeC
Q 045248          119 TPDGAALKSPSGRKYDAVIH-----CATGI----PWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~d~v~d-----~~g~~----~~~~~~~~l~~~G~iv~~g  162 (240)
                      ..+..   .. ...||.|+.     .+|..    .+..+.+.|+|+|.++...
T Consensus       219 ~~D~~---~l-~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        219 LQDYR---DL-NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             ECchh---hc-CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            11111   11 246998864     33432    2677788999999987653

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.62  E-value=5.8e-05  Score=63.74  Aligned_cols=119  Identities=12%  Similarity=0.082  Sum_probs=73.9

Q ss_pred             ccceecccCCCcccceEEEecCCceee---C-CCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCch
Q 045248            3 NLWRIDVSHNGGGLAEFAVAKESSTVA---R-PSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGG   78 (240)
Q Consensus         3 ~~~~~~~~~~~G~~~e~~~v~~~~~~~---i-p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~   78 (240)
                      ......|...++.|++++.++. .+..   | +..+|...+|         .....+..+.     .++++++|+| +|.
T Consensus       127 ~~~~~~g~~l~~lf~~a~~~~k-~vr~~t~i~~~~vSv~~~A---------v~la~~~~~~-----l~~~~VlViG-aG~  190 (417)
T TIGR01035       127 QEEKTVGKVLERLFQKAFSVGK-RVRTETDISAGAVSISSAA---------VELAERIFGS-----LKGKKALLIG-AGE  190 (417)
T ss_pred             HHcCCchHHHHHHHHHHHHHhh-hhhhhcCCCCCCcCHHHHH---------HHHHHHHhCC-----ccCCEEEEEC-ChH
Confidence            3344445556788999888876 3332   3 3334422222         1111133333     4789999999 899


Q ss_pred             HHHHHHHHHHhCCC-EEEEEeCc-cc-HHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC
Q 045248           79 VGHYAVQLAKLGNT-HVTASCGA-RN-IEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP  144 (240)
Q Consensus        79 vG~~~~~~a~~~g~-~v~~~~~~-~~-~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~  144 (240)
                      +|..+++.++..|+ +|+++.++ ++ .+.++++|.. .+...+. ...+     .++|+||+|+|.+.
T Consensus       191 iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~-~i~~~~l-~~~l-----~~aDvVi~aT~s~~  252 (417)
T TIGR01035       191 MGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGE-AVKFEDL-EEYL-----AEADIVISSTGAPH  252 (417)
T ss_pred             HHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCe-EeeHHHH-HHHH-----hhCCEEEECCCCCC
Confidence            99999999999995 88888875 55 3466777764 3332210 1111     36899999998643

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.55  E-value=0.00038  Score=49.29  Aligned_cols=91  Identities=19%  Similarity=0.183  Sum_probs=56.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHHHH-HhcCCC--EEEeCCCCccccccCCCCCcccEEEeCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNIEFV-KSLGAD--EVLDYKTPDGAALKSPSGRKYDAVIHCA  140 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~~~-~~~g~~--~v~~~~~~~~~~~~~~~~~~~d~v~d~~  140 (240)
                      .+++++|+| +|++|.+++..+...|+ +|+.+.|+ ++.+.+ +.++..  ..+.+.+.. .     .-..+|+|+.|+
T Consensus        11 ~~~~vlviG-aGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~-~-----~~~~~DivI~aT   83 (135)
T PF01488_consen   11 KGKRVLVIG-AGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLE-E-----ALQEADIVINAT   83 (135)
T ss_dssp             TTSEEEEES-SSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHC-H-----HHHTESEEEE-S
T ss_pred             CCCEEEEEC-CHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHH-H-----HHhhCCeEEEec
Confidence            789999999 89999999999999999 68888876 554444 556332  233333211 0     114599999999


Q ss_pred             CCCCccccccCCCCC----cEEEEeCC
Q 045248          141 TGIPWSTFEPNLGTN----GKVIDITP  163 (240)
Q Consensus       141 g~~~~~~~~~~l~~~----G~iv~~g~  163 (240)
                      +.....-.-..+++.    +.++.++.
T Consensus        84 ~~~~~~i~~~~~~~~~~~~~~v~Dla~  110 (135)
T PF01488_consen   84 PSGMPIITEEMLKKASKKLRLVIDLAV  110 (135)
T ss_dssp             STTSTSSTHHHHTTTCHHCSEEEES-S
T ss_pred             CCCCcccCHHHHHHHHhhhhceecccc
Confidence            864321111223333    46666654

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.53  E-value=9.4e-05  Score=58.75  Aligned_cols=99  Identities=18%  Similarity=0.276  Sum_probs=58.6

Q ss_pred             HHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHH----HhcCCCEEEeCCCCcccccc
Q 045248           52 ALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFV----KSLGADEVLDYKTPDGAALK  126 (240)
Q Consensus        52 ~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~----~~~g~~~v~~~~~~~~~~~~  126 (240)
                      .+.+.+++     ++|++||-+| +| .|-.+..+++.+|++|++++- .+..+++    ++.|...-+.....+...+ 
T Consensus        53 ~~~~~~~l-----~~G~~vLDiG-cG-wG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~-  124 (273)
T PF02353_consen   53 LLCEKLGL-----KPGDRVLDIG-CG-WGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL-  124 (273)
T ss_dssp             HHHTTTT-------TT-EEEEES--T-TSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG--
T ss_pred             HHHHHhCC-----CCCCEEEEeC-CC-ccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc-
Confidence            45588888     9999999999 55 788888999999999999995 4666655    4556321111111111111 


Q ss_pred             CCCCCcccEEE-----eCCCCCC----ccccccCCCCCcEEEEe
Q 045248          127 SPSGRKYDAVI-----HCATGIP----WSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       127 ~~~~~~~d~v~-----d~~g~~~----~~~~~~~l~~~G~iv~~  161 (240)
                        . ..||.|+     +.+|.+.    +..+.+.|+|+|+++.-
T Consensus       125 --~-~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq  165 (273)
T PF02353_consen  125 --P-GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ  165 (273)
T ss_dssp             -----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred             --C-CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence              1 2788874     4455332    66777899999998743

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=97.52  E-value=0.00035  Score=53.61  Aligned_cols=77  Identities=22%  Similarity=0.274  Sum_probs=55.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCC----CEEEeCCCCc--ccccc--CCCCCcccE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGA----DEVLDYKTPD--GAALK--SPSGRKYDA  135 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~----~~v~~~~~~~--~~~~~--~~~~~~~d~  135 (240)
                      .++.++|.||++|+|.+.++.+...|++|+.+.+. ++++.+ .+++.    ...+|-++..  ...++  ...-..+|+
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDi   84 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDI   84 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccE
Confidence            56889999999999999999999999999999975 777666 56773    2233444432  11121  112356999


Q ss_pred             EEeCCCC
Q 045248          136 VIHCATG  142 (240)
Q Consensus       136 v~d~~g~  142 (240)
                      .++..|-
T Consensus        85 LvNNAGl   91 (246)
T COG4221          85 LVNNAGL   91 (246)
T ss_pred             EEecCCC
Confidence            9999983

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.52  E-value=0.00059  Score=50.76  Aligned_cols=116  Identities=15%  Similarity=0.136  Sum_probs=73.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHH-HHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC-
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEF-VKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG-  142 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~-  142 (240)
                      -.|++|.|+| .|.+|...++.++.+|++|++.++..+... ..+.+..    +.+. ...+     ...|+|+.++.. 
T Consensus        34 l~g~tvgIiG-~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~----~~~l-~ell-----~~aDiv~~~~plt  102 (178)
T PF02826_consen   34 LRGKTVGIIG-YGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVE----YVSL-DELL-----AQADIVSLHLPLT  102 (178)
T ss_dssp             STTSEEEEES-TSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEE----ESSH-HHHH-----HH-SEEEE-SSSS
T ss_pred             cCCCEEEEEE-EcCCcCeEeeeeecCCceeEEecccCChhhhcccccce----eeeh-hhhc-----chhhhhhhhhccc
Confidence            3699999999 999999999999999999999998644333 4555531    1111 1111     247888888862 


Q ss_pred             C-C----ccccccCCCCCcEEEEeCCCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecc
Q 045248          143 I-P----WSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPL  217 (240)
Q Consensus       143 ~-~----~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  217 (240)
                      + +    -...+..++++..+|.++-..                          --+-+.+++.+++|++.--.-+++.-
T Consensus       103 ~~T~~li~~~~l~~mk~ga~lvN~aRG~--------------------------~vde~aL~~aL~~g~i~ga~lDV~~~  156 (178)
T PF02826_consen  103 PETRGLINAEFLAKMKPGAVLVNVARGE--------------------------LVDEDALLDALESGKIAGAALDVFEP  156 (178)
T ss_dssp             TTTTTSBSHHHHHTSTTTEEEEESSSGG--------------------------GB-HHHHHHHHHTTSEEEEEESS-SS
T ss_pred             cccceeeeeeeeeccccceEEEeccchh--------------------------hhhhhHHHHHHhhccCceEEEECCCC
Confidence            1 1    235567888888888776421                          11345667778888887544444433

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK12742 oxidoreductase; Provisional

Probab=97.52  E-value=0.00057  Score=52.99  Aligned_cols=75  Identities=21%  Similarity=0.226  Sum_probs=49.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-c-ccHHHH-HhcCCCEE-EeCCCCc-c-ccccCCCCCcccEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-A-RNIEFV-KSLGADEV-LDYKTPD-G-AALKSPSGRKYDAVIHC  139 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~-~~~~~~-~~~g~~~v-~~~~~~~-~-~~~~~~~~~~~d~v~d~  139 (240)
                      .++++||+|++|++|..+++.+...|++|+.+.+ . ++.+.+ .+++...+ .|..+.. . ..+..  ..++|+++.+
T Consensus         5 ~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~--~~~id~li~~   82 (237)
T PRK12742          5 TGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRK--SGALDILVVN   82 (237)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHH--hCCCcEEEEC
Confidence            5789999999999999999999999999887764 2 333333 44554322 1222211 1 11221  2469999999


Q ss_pred             CCC
Q 045248          140 ATG  142 (240)
Q Consensus       140 ~g~  142 (240)
                      +|.
T Consensus        83 ag~   85 (237)
T PRK12742         83 AGI   85 (237)
T ss_pred             CCC
Confidence            984

>PRK05993 short chain dehydrogenase; Provisional

Probab=97.51  E-value=0.00037  Score=55.61  Aligned_cols=76  Identities=26%  Similarity=0.517  Sum_probs=52.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEE-EeCCCCc--ccccc---CCCCCcccEEEe
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEV-LDYKTPD--GAALK---SPSGRKYDAVIH  138 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v-~~~~~~~--~~~~~---~~~~~~~d~v~d  138 (240)
                      .+++++|+||+|++|..+++.+...|++|++++++ ++.+.+.+.+...+ .|..+..  ...+.   ...++.+|+++.
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li~   82 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEAEGLEAFQLDYAEPESIAALVAQVLELSGGRLDALFN   82 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCceEEEccCCCHHHHHHHHHHHHHHcCCCccEEEE
Confidence            46789999999999999999999999999999975 66666665554322 2333322  11111   112347999999


Q ss_pred             CCC
Q 045248          139 CAT  141 (240)
Q Consensus       139 ~~g  141 (240)
                      +.|
T Consensus        83 ~Ag   85 (277)
T PRK05993         83 NGA   85 (277)
T ss_pred             CCC
Confidence            987

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.45  E-value=0.0005  Score=55.11  Aligned_cols=93  Identities=14%  Similarity=0.207  Sum_probs=66.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP  144 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~  144 (240)
                      .+++++|+| .|.+|..+++.++.+|++|++..++ ++.+.+.++|... +...+. ...+     .+.|+|+.++....
T Consensus       150 ~gk~v~IiG-~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~-~~~~~l-~~~l-----~~aDiVint~P~~i  221 (287)
T TIGR02853       150 HGSNVMVLG-FGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIP-FPLNKL-EEKV-----AEIDIVINTIPALV  221 (287)
T ss_pred             CCCEEEEEc-ChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCee-ecHHHH-HHHh-----ccCCEEEECCChHH
Confidence            689999999 8999999999999999999988875 5556666666532 221110 1111     36899999996543


Q ss_pred             -ccccccCCCCCcEEEEeCCCch
Q 045248          145 -WSTFEPNLGTNGKVIDITPGPS  166 (240)
Q Consensus       145 -~~~~~~~l~~~G~iv~~g~~~~  166 (240)
                       -...++.++++..++.++..+.
T Consensus       222 i~~~~l~~~k~~aliIDlas~Pg  244 (287)
T TIGR02853       222 LTADVLSKLPKHAVIIDLASKPG  244 (287)
T ss_pred             hCHHHHhcCCCCeEEEEeCcCCC
Confidence             2345677888888888876543

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.45  E-value=0.00088  Score=52.94  Aligned_cols=104  Identities=12%  Similarity=0.194  Sum_probs=69.0

Q ss_pred             HHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEe-CcccHHHH----HhcCCCEEEeCCCCcc
Q 045248           48 TAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASC-GARNIEFV----KSLGADEVLDYKTPDG  122 (240)
Q Consensus        48 ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~-~~~~~~~~----~~~g~~~v~~~~~~~~  122 (240)
                      .++..+.+.+++     ++|++||=+|  .|-|.+++.+|+.+|.+|++++ +++..+.+    ++.|...-+...-.+.
T Consensus        59 ~k~~~~~~kl~L-----~~G~~lLDiG--CGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~  131 (283)
T COG2230          59 AKLDLILEKLGL-----KPGMTLLDIG--CGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDY  131 (283)
T ss_pred             HHHHHHHHhcCC-----CCCCEEEEeC--CChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccc
Confidence            344455588888     9999999998  4578889999999999999999 54555554    4566441111111111


Q ss_pred             ccccCCCCCcccEE-----EeCCCCCC----ccccccCCCCCcEEEEeC
Q 045248          123 AALKSPSGRKYDAV-----IHCATGIP----WSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       123 ~~~~~~~~~~~d~v-----~d~~g~~~----~~~~~~~l~~~G~iv~~g  162 (240)
                      ..+.    +.||-|     |+.+|.+.    +..+.+.|+++|++++-.
T Consensus       132 rd~~----e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~  176 (283)
T COG2230         132 RDFE----EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS  176 (283)
T ss_pred             cccc----cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence            1121    238877     45566532    778888999999987554

>PRK05693 short chain dehydrogenase; Provisional

Probab=97.43  E-value=0.00048  Score=54.83  Aligned_cols=75  Identities=21%  Similarity=0.232  Sum_probs=51.0

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEE-EeCCCCc--cccccCC--CCCcccEEEeCCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEV-LDYKTPD--GAALKSP--SGRKYDAVIHCAT  141 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v-~~~~~~~--~~~~~~~--~~~~~d~v~d~~g  141 (240)
                      +++||+||+|++|..+++.+...|++|++++++ ++.+.+.+.+...+ .|..+..  ...++..  ...++|+++++.|
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag   81 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNAG   81 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            479999999999999999999999999999875 55555555554322 2333322  1111111  2246999999998


Q ss_pred             C
Q 045248          142 G  142 (240)
Q Consensus       142 ~  142 (240)
                      .
T Consensus        82 ~   82 (274)
T PRK05693         82 Y   82 (274)
T ss_pred             C
Confidence            3

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=0.0021  Score=48.41  Aligned_cols=99  Identities=20%  Similarity=0.191  Sum_probs=68.3

Q ss_pred             HhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-c----cHHHHHhcCCCEEEeCCCCccccccCC
Q 045248           54 TQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-R----NIEFVKSLGADEVLDYKTPDGAALKSP  128 (240)
Q Consensus        54 ~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~----~~~~~~~~g~~~v~~~~~~~~~~~~~~  128 (240)
                      .+...+     +++++||-+|  .|.|..+.-+++..| +|+.+.+. +    ..+.++.+|...|.... .| ...-..
T Consensus        65 ~~~L~~-----~~g~~VLEIG--tGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~-gD-G~~G~~  134 (209)
T COG2518          65 LQLLEL-----KPGDRVLEIG--TGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRH-GD-GSKGWP  134 (209)
T ss_pred             HHHhCC-----CCCCeEEEEC--CCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEE-CC-cccCCC
Confidence            366677     8999999998  457888888888888 99999974 2    23445678875432211 11 111122


Q ss_pred             CCCcccEEEeCCCCCC-ccccccCCCCCcEEEEeC
Q 045248          129 SGRKYDAVIHCATGIP-WSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       129 ~~~~~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~g  162 (240)
                      ....||.|+-+.+.+. -...++.|++||+++..-
T Consensus       135 ~~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~Pv  169 (209)
T COG2518         135 EEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPV  169 (209)
T ss_pred             CCCCcCEEEEeeccCCCCHHHHHhcccCCEEEEEE
Confidence            3367999998888766 457889999999987553

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=97.39  E-value=0.00054  Score=51.13  Aligned_cols=76  Identities=17%  Similarity=0.137  Sum_probs=52.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCC---CEEEeCCCCc--cccccC--CCCCcccEEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGA---DEVLDYKTPD--GAALKS--PSGRKYDAVI  137 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~---~~v~~~~~~~--~~~~~~--~~~~~~d~v~  137 (240)
                      -|.+|||.||++|+|+.+.+-....|.+||.+.+. ++++.++..-.   ..+-|..+.+  ....++  ..-...++++
T Consensus         4 tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~lNvli   83 (245)
T COG3967           4 TGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYPNLNVLI   83 (245)
T ss_pred             cCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCCchheee
Confidence            68999999999999999999999999999999975 78888865432   2333332222  111111  1123467888


Q ss_pred             eCCC
Q 045248          138 HCAT  141 (240)
Q Consensus       138 d~~g  141 (240)
                      ++.|
T Consensus        84 NNAG   87 (245)
T COG3967          84 NNAG   87 (245)
T ss_pred             eccc
Confidence            8777

>PRK08177 short chain dehydrogenase; Provisional

Probab=97.35  E-value=0.0012  Score=50.86  Aligned_cols=75  Identities=21%  Similarity=0.242  Sum_probs=50.6

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEE--eCCCCc--cccccCCCCCcccEEEeCCCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVL--DYKTPD--GAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~--~~~~~~--~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      ++++|+|++|++|...++.+...|++|++++++ ++.+.+++++....+  |..+..  ....+.....++|+++.++|.
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~ag~   81 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNAGI   81 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcCcc
Confidence            579999999999999998888899999999965 555555555433332  222221  112233333579999999874

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.30  E-value=0.00053  Score=58.14  Aligned_cols=72  Identities=18%  Similarity=0.254  Sum_probs=51.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccH-HHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNI-EFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCAT  141 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~-~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g  141 (240)
                      .++++|+|+| +|.+|.++++.++..|+ +|+++.++ ++. +.++++|.. +++..+. ...+     .++|+||+|+|
T Consensus       180 ~~~~~vlViG-aG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~-~~~~~~~-~~~l-----~~aDvVI~aT~  251 (423)
T PRK00045        180 LSGKKVLVIG-AGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGE-AIPLDEL-PEAL-----AEADIVISSTG  251 (423)
T ss_pred             ccCCEEEEEC-chHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCc-EeeHHHH-HHHh-----ccCCEEEECCC
Confidence            3789999999 89999999999999998 78877765 554 466778754 3332111 1111     35899999999


Q ss_pred             CCC
Q 045248          142 GIP  144 (240)
Q Consensus       142 ~~~  144 (240)
                      .+.
T Consensus       252 s~~  254 (423)
T PRK00045        252 APH  254 (423)
T ss_pred             CCC
Confidence            643

>PRK06182 short chain dehydrogenase; Validated

Probab=97.26  E-value=0.001  Score=52.87  Aligned_cols=77  Identities=26%  Similarity=0.307  Sum_probs=51.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEE-EeCCCCc--cccccC--CCCCcccEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEV-LDYKTPD--GAALKS--PSGRKYDAVIHC  139 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v-~~~~~~~--~~~~~~--~~~~~~d~v~d~  139 (240)
                      ++++++|+|++|++|..+++.+...|++|+++.++ ++.+.+...+...+ .|..+.+  ...++.  ....++|+++.+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~   81 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNN   81 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence            46789999999999999999998899999999875 55555544443322 2333322  111111  123479999999


Q ss_pred             CCC
Q 045248          140 ATG  142 (240)
Q Consensus       140 ~g~  142 (240)
                      .|.
T Consensus        82 ag~   84 (273)
T PRK06182         82 AGY   84 (273)
T ss_pred             CCc
Confidence            984

>PRK12367 short chain dehydrogenase; Provisional

Probab=97.26  E-value=0.0017  Score=50.92  Aligned_cols=75  Identities=20%  Similarity=0.194  Sum_probs=47.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcc--cHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGAR--NIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~--~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      .+++++|+||+|++|..+++.+...|++|+.+.+..  ..+... .+....+..+-.+...+.... .++|+++.++|.
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~-~~iDilVnnAG~   89 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESND-ESPNEWIKWECGKEESLDKQL-ASLDVLILNHGI   89 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhc-cCCCeEEEeeCCCHHHHHHhc-CCCCEEEECCcc
Confidence            578999999999999999999999999999988643  222111 111222221111111121111 359999999984

>PRK06139 short chain dehydrogenase; Provisional

Probab=97.25  E-value=0.00088  Score=54.93  Aligned_cols=77  Identities=18%  Similarity=0.284  Sum_probs=51.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH----HHhcCCCE-EE--eCCCCc--cccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF----VKSLGADE-VL--DYKTPD--GAALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~----~~~~g~~~-v~--~~~~~~--~~~~~~--~~~~~~  133 (240)
                      .+++++|+|++|++|.++++.+...|++|+.+.++ ++.+.    +++.|... ++  |..+.+  ....+.  ....++
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   85 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGRI   85 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence            57899999999999999999999999999998865 44432    34456542 22  322222  111111  112569


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |++|+++|.
T Consensus        86 D~lVnnAG~   94 (330)
T PRK06139         86 DVWVNNVGV   94 (330)
T ss_pred             CEEEECCCc
Confidence            999999983

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.22  E-value=0.0028  Score=45.84  Aligned_cols=102  Identities=13%  Similarity=0.056  Sum_probs=64.6

Q ss_pred             HHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHhcCCCEEEeCCCCccccccCC
Q 045248           50 HQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPDGAALKSP  128 (240)
Q Consensus        50 ~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~  128 (240)
                      +.++.+..++.    -.|++++|.| =|.+|...++.++.+|++|++++. +-+.-.+..-|.. +..-    ...+   
T Consensus        10 ~d~i~r~t~~~----l~Gk~vvV~G-YG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~-v~~~----~~a~---   76 (162)
T PF00670_consen   10 VDGIMRATNLM----LAGKRVVVIG-YGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFE-VMTL----EEAL---   76 (162)
T ss_dssp             HHHHHHHH-S------TTSEEEEE---SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-E-EE-H----HHHT---
T ss_pred             HHHHHhcCcee----eCCCEEEEeC-CCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcE-ecCH----HHHH---
Confidence            33443444543    4899999999 999999999999999999999996 4555555555643 2210    1111   


Q ss_pred             CCCcccEEEeCCCCCC-c-cccccCCCCCcEEEEeCCCch
Q 045248          129 SGRKYDAVIHCATGIP-W-STFEPNLGTNGKVIDITPGPS  166 (240)
Q Consensus       129 ~~~~~d~v~d~~g~~~-~-~~~~~~l~~~G~iv~~g~~~~  166 (240)
                        ...|+++.++|... + .+-++.++++..+..+|..+.
T Consensus        77 --~~adi~vtaTG~~~vi~~e~~~~mkdgail~n~Gh~d~  114 (162)
T PF00670_consen   77 --RDADIFVTATGNKDVITGEHFRQMKDGAILANAGHFDV  114 (162)
T ss_dssp             --TT-SEEEE-SSSSSSB-HHHHHHS-TTEEEEESSSSTT
T ss_pred             --hhCCEEEECCCCccccCHHHHHHhcCCeEEeccCcCce
Confidence              35799999999865 3 466788999989988886543

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK07060 short chain dehydrogenase; Provisional

Probab=97.22  E-value=0.0012  Score=51.39  Aligned_cols=75  Identities=25%  Similarity=0.391  Sum_probs=50.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCCEE-EeCCCCc--cccccCCCCCcccEEEeCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGADEV-LDYKTPD--GAALKSPSGRKYDAVIHCA  140 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~~v-~~~~~~~--~~~~~~~~~~~~d~v~d~~  140 (240)
                      ++++++|+|++|++|..+++.+...|++|+.+.++ ++.+.+ +..+...+ .|..+..  ...+..  ..++|++|.+.
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~--~~~~d~vi~~a   85 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAA--AGAFDGLVNCA   85 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHH--hCCCCEEEECC
Confidence            57899999999999999999999999999998875 444443 33443322 2332221  111111  24689999999


Q ss_pred             CC
Q 045248          141 TG  142 (240)
Q Consensus       141 g~  142 (240)
                      |.
T Consensus        86 g~   87 (245)
T PRK07060         86 GI   87 (245)
T ss_pred             CC
Confidence            84

>PRK06057 short chain dehydrogenase; Provisional

Probab=97.19  E-value=0.0013  Score=51.68  Aligned_cols=77  Identities=14%  Similarity=0.097  Sum_probs=50.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCCEE-EeCCCCc--cccccCC--CCCcccEEEe
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGADEV-LDYKTPD--GAALKSP--SGRKYDAVIH  138 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~~v-~~~~~~~--~~~~~~~--~~~~~d~v~d  138 (240)
                      ++++++|+||+|++|..+++.+...|++|+.++++ .+.+.. ++++...+ .|..+..  ...+...  ...++|+++.
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~   85 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETYGSVDIAFN   85 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            57899999999999999999999999999999865 443333 44543211 2333322  1111111  1246899999


Q ss_pred             CCCC
Q 045248          139 CATG  142 (240)
Q Consensus       139 ~~g~  142 (240)
                      +.|.
T Consensus        86 ~ag~   89 (255)
T PRK06057         86 NAGI   89 (255)
T ss_pred             CCCc
Confidence            9874

>PRK09291 short chain dehydrogenase; Provisional

Probab=97.17  E-value=0.0017  Score=50.98  Aligned_cols=74  Identities=19%  Similarity=0.184  Sum_probs=48.2

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH----hcCCC-EEE--eCCCCccccccCCCCCcccEEEe
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK----SLGAD-EVL--DYKTPDGAALKSPSGRKYDAVIH  138 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~----~~g~~-~v~--~~~~~~~~~~~~~~~~~~d~v~d  138 (240)
                      ++++||+|++|++|..+++.+...|++|+++++. ++.+.++    ..+.. .++  |..+..  .+......++|++|.
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--~~~~~~~~~id~vi~   79 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAI--DRAQAAEWDVDVLLN   79 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHH--HHHHHhcCCCCEEEE
Confidence            3579999999999999999999999999998864 3333332    23322 122  322221  111112247999999


Q ss_pred             CCCC
Q 045248          139 CATG  142 (240)
Q Consensus       139 ~~g~  142 (240)
                      +.|.
T Consensus        80 ~ag~   83 (257)
T PRK09291         80 NAGI   83 (257)
T ss_pred             CCCc
Confidence            9883

>PRK06949 short chain dehydrogenase; Provisional

Probab=97.16  E-value=0.0011  Score=52.02  Aligned_cols=77  Identities=21%  Similarity=0.229  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH----hcC-CCEEEe--CCCCc-c-ccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK----SLG-ADEVLD--YKTPD-G-AALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~----~~g-~~~v~~--~~~~~-~-~~~~~--~~~~~~  133 (240)
                      .+++++|+|++|++|..+++.+...|++|+++.++ ++.+.+.    ..+ ...++.  ..+.+ . ..+..  ....++
T Consensus         8 ~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   87 (258)
T PRK06949          8 EGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAGTI   87 (258)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence            67999999999999999999999999999999864 4443332    222 122332  22211 1 11110  112468


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.+.|.
T Consensus        88 d~li~~ag~   96 (258)
T PRK06949         88 DILVNNSGV   96 (258)
T ss_pred             CEEEECCCC
Confidence            999999983

>PRK05866 short chain dehydrogenase; Provisional

Probab=97.12  E-value=0.0019  Score=52.08  Aligned_cols=77  Identities=26%  Similarity=0.265  Sum_probs=49.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCC-EEE--eCCCCc--cccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGAD-EVL--DYKTPD--GAALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~-~v~--~~~~~~--~~~~~~--~~~~~~  133 (240)
                      .+++++|+||+|++|..+++.+...|++|++++++ ++.+.+    ++.+.. ..+  |-.+..  ...++.  ..-+++
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~i  118 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGGV  118 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            46889999999999999999998899999999975 444333    223322 222  222211  111111  012469


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.+.|.
T Consensus       119 d~li~~AG~  127 (293)
T PRK05866        119 DILINNAGR  127 (293)
T ss_pred             CEEEECCCC
Confidence            999999984

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.11  E-value=0.002  Score=47.85  Aligned_cols=88  Identities=27%  Similarity=0.260  Sum_probs=57.6

Q ss_pred             EEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccc-cCCCCCcccEEEeCCCCCC---
Q 045248           70 ILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAAL-KSPSGRKYDAVIHCATGIP---  144 (240)
Q Consensus        70 vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~-~~~~~~~~d~v~d~~g~~~---  144 (240)
                      |+|.||+|.+|..+++.+...|.+|++++++ ++.+.  ..+. .++..+-.+...+ ...  .++|.||.++|...   
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~-~~~~~d~~d~~~~~~al--~~~d~vi~~~~~~~~~~   75 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGV-EIIQGDLFDPDSVKAAL--KGADAVIHAAGPPPKDV   75 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTE-EEEESCTTCHHHHHHHH--TTSSEEEECCHSTTTHH
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--cccc-ccceeeehhhhhhhhhh--hhcchhhhhhhhhcccc
Confidence            7899999999999999999999999999975 55555  3333 3443333332211 112  37999999998422   


Q ss_pred             --ccccccCCCCCc--EEEEeC
Q 045248          145 --WSTFEPNLGTNG--KVIDIT  162 (240)
Q Consensus       145 --~~~~~~~l~~~G--~iv~~g  162 (240)
                        ....++.++..|  +++.++
T Consensus        76 ~~~~~~~~a~~~~~~~~~v~~s   97 (183)
T PF13460_consen   76 DAAKNIIEAAKKAGVKRVVYLS   97 (183)
T ss_dssp             HHHHHHHHHHHHTTSSEEEEEE
T ss_pred             cccccccccccccccccceeee
Confidence              333444443333  666665

...

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.11  E-value=0.0026  Score=51.18  Aligned_cols=95  Identities=17%  Similarity=0.120  Sum_probs=58.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHHHHHh----cCCCEEEeCCCCccccccCCCCCcccEEEe
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNIEFVKS----LGADEVLDYKTPDGAALKSPSGRKYDAVIH  138 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d  138 (240)
                      .++++||-+| +|. |..++.+++ .|+ +|++++.+ ...+.+++    .+....+.....+   .......+||+|+.
T Consensus       158 ~~g~~VLDvG-cGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~---~~~~~~~~fDlVva  231 (288)
T TIGR00406       158 LKDKNVIDVG-CGS-GILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY---LEQPIEGKADVIVA  231 (288)
T ss_pred             CCCCEEEEeC-CCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc---cccccCCCceEEEE
Confidence            5789999999 666 777777665 566 89999954 55555543    2221111100000   11112357999997


Q ss_pred             CCCCC----CccccccCCCCCcEEEEeCCCc
Q 045248          139 CATGI----PWSTFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus       139 ~~g~~----~~~~~~~~l~~~G~iv~~g~~~  165 (240)
                      .....    .+..+.+.|+++|.++..|...
T Consensus       232 n~~~~~l~~ll~~~~~~LkpgG~li~sgi~~  262 (288)
T TIGR00406       232 NILAEVIKELYPQFSRLVKPGGWLILSGILE  262 (288)
T ss_pred             ecCHHHHHHHHHHHHHHcCCCcEEEEEeCcH
Confidence            65432    2556778999999999887543

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.10  E-value=0.0032  Score=47.65  Aligned_cols=93  Identities=17%  Similarity=0.177  Sum_probs=59.9

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCC--CEEEEEeCc-ccHHHH----HhcC-CCEEEeCCCCccccccCCCCCcccEE
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGN--THVTASCGA-RNIEFV----KSLG-ADEVLDYKTPDGAALKSPSGRKYDAV  136 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g--~~v~~~~~~-~~~~~~----~~~g-~~~v~~~~~~~~~~~~~~~~~~~d~v  136 (240)
                      .++++|+-.| +|. |..++.+++..+  .+|++++.+ +..+.+    +.+| .+.+............. ....+|.|
T Consensus        39 ~~~~~vlDlG-~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~-~~~~~D~V  115 (198)
T PRK00377         39 RKGDMILDIG-CGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT-INEKFDRI  115 (198)
T ss_pred             CCcCEEEEeC-CcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh-cCCCCCEE
Confidence            7999999999 676 888899988764  489999964 555544    4566 33222111111111111 12479999


Q ss_pred             EeCCCCC----CccccccCCCCCcEEEE
Q 045248          137 IHCATGI----PWSTFEPNLGTNGKVID  160 (240)
Q Consensus       137 ~d~~g~~----~~~~~~~~l~~~G~iv~  160 (240)
                      +...+..    .+..+.+.|+++|+++.
T Consensus       116 ~~~~~~~~~~~~l~~~~~~LkpgG~lv~  143 (198)
T PRK00377        116 FIGGGSEKLKEIISASWEIIKKGGRIVI  143 (198)
T ss_pred             EECCCcccHHHHHHHHHHHcCCCcEEEE
Confidence            9866532    26677888999999875

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.09  E-value=0.0015  Score=55.91  Aligned_cols=77  Identities=23%  Similarity=0.286  Sum_probs=50.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCccc---H-HHHHhcCCCEE-EeCCCCc--cccccCC--CCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARN---I-EFVKSLGADEV-LDYKTPD--GAALKSP--SGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~---~-~~~~~~g~~~v-~~~~~~~--~~~~~~~--~~~~~d~v  136 (240)
                      +++++||+|++|++|..+++.+...|++|+++.++..   . +..++++...+ .|..+.+  ...+...  ...++|++
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~v  288 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDIV  288 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCCEE
Confidence            5789999999999999999999999999998886422   2 22234554322 2433332  1111111  12369999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      |.+.|.
T Consensus       289 i~~AG~  294 (450)
T PRK08261        289 VHNAGI  294 (450)
T ss_pred             EECCCc
Confidence            999983

>PRK08017 oxidoreductase; Provisional

Probab=97.09  E-value=0.0027  Score=49.82  Aligned_cols=75  Identities=24%  Similarity=0.353  Sum_probs=51.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEE-eCCCCcc--c---cccCCCCCcccEEEeCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVL-DYKTPDG--A---ALKSPSGRKYDAVIHCA  140 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~-~~~~~~~--~---~~~~~~~~~~d~v~d~~  140 (240)
                      ++++|+|++|++|..+++.+...|++|+++.++ ++.+.+++.+...+. |..+...  .   .+....+.++|.++.+.
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~ii~~a   82 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNSLGFTGILLDLDDPESVERAADEVIALTDNRLYGLFNNA   82 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHhCCCeEEEeecCCHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence            579999999999999999999999999998875 666767667754332 3222211  1   11111235688999888


Q ss_pred             CC
Q 045248          141 TG  142 (240)
Q Consensus       141 g~  142 (240)
                      |.
T Consensus        83 g~   84 (256)
T PRK08017         83 GF   84 (256)
T ss_pred             CC
Confidence            73

>PRK04148 hypothetical protein; Provisional

Probab=97.08  E-value=0.004  Score=43.62  Aligned_cols=93  Identities=19%  Similarity=0.125  Sum_probs=59.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHhcCCCEEEeCC-CCcc--------------------
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYK-TPDG--------------------  122 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~v~~~~-~~~~--------------------  122 (240)
                      .++.+++++| .| .|...+..++..|..|++++. ++..+.+++.+...+.+.- +++.                    
T Consensus        15 ~~~~kileIG-~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~   92 (134)
T PRK04148         15 GKNKKIVELG-IG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQP   92 (134)
T ss_pred             ccCCEEEEEE-ec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHH
Confidence            4668999999 78 887667677788999999995 4777888877764443211 1110                    


Q ss_pred             ccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEE
Q 045248          123 AALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVI  159 (240)
Q Consensus       123 ~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv  159 (240)
                      .+++....-+.|++|-..+++....-+++....|..+
T Consensus        93 ~~~~la~~~~~~~~i~~l~~e~~~~~~kl~ny~~~~~  129 (134)
T PRK04148         93 FILELAKKINVPLIIKPLSGEEPIKELKLINYKGKPI  129 (134)
T ss_pred             HHHHHHHHcCCCEEEEcCCCCCCCcceEEEecCCeEE
Confidence            0111223345677777777666555566666666543

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=97.07  E-value=0.00065  Score=46.15  Aligned_cols=92  Identities=16%  Similarity=0.220  Sum_probs=57.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHH-hCCCEEEEEeC-cccHHHHHh----cCCCEEEeCCCCccccccCCCCCcccEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAK-LGNTHVTASCG-ARNIEFVKS----LGADEVLDYKTPDGAALKSPSGRKYDAVIHC  139 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~-~~g~~v~~~~~-~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~  139 (240)
                      |+.+||-+|  .|.|..++.+++ ..+++|++++. ++..+.+++    .+...-+.....+. ........+||+|+..
T Consensus         1 p~~~vLDlG--cG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~   77 (112)
T PF12847_consen    1 PGGRVLDLG--CGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICS   77 (112)
T ss_dssp             TTCEEEEET--TTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEEC
T ss_pred             CCCEEEEEc--CcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEEC
Confidence            578899998  345888888888 57889999995 455555542    22211111111111 1222334569999987


Q ss_pred             C-CCC-C---------ccccccCCCCCcEEEE
Q 045248          140 A-TGI-P---------WSTFEPNLGTNGKVID  160 (240)
Q Consensus       140 ~-g~~-~---------~~~~~~~l~~~G~iv~  160 (240)
                      . ... .         ++.+.+.|+|+|+++.
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi  109 (112)
T PF12847_consen   78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVI  109 (112)
T ss_dssp             SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence            7 321 1         4667788999999875

...

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.06  E-value=0.017  Score=43.50  Aligned_cols=76  Identities=18%  Similarity=0.154  Sum_probs=47.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-Hhc----CCCEE-EeCCCCccccccCCCCCcccEEEe
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSL----GADEV-LDYKTPDGAALKSPSGRKYDAVIH  138 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~----g~~~v-~~~~~~~~~~~~~~~~~~~d~v~d  138 (240)
                      ++.+++|+|++|++|...+..+...|++|+.+.++ ++.+.+ +++    +.... .+..+.+ ...+..  .+.|+||.
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~--~~~diVi~  103 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDA-ARAAAI--KGADVVFA  103 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHH-HHHHHH--hcCCEEEE
Confidence            67899999988999999888888889999888865 444333 222    22211 1111111 111111  36899999


Q ss_pred             CCCCCC
Q 045248          139 CATGIP  144 (240)
Q Consensus       139 ~~g~~~  144 (240)
                      ++....
T Consensus       104 at~~g~  109 (194)
T cd01078         104 AGAAGV  109 (194)
T ss_pred             CCCCCc
Confidence            887543

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK07806 short chain dehydrogenase; Provisional

Probab=97.03  E-value=0.0045  Score=48.35  Aligned_cols=35  Identities=26%  Similarity=0.347  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .+++++|+|++|++|..+++.+...|++|+.+.+.
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~   39 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQ   39 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            56899999999999999999888899999888764

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=97.01  E-value=0.003  Score=55.04  Aligned_cols=40  Identities=23%  Similarity=0.206  Sum_probs=35.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHH
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIE  104 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~  104 (240)
                      +.|+++||.||+|++|..+++.+...|++|+++.+. ++.+
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~  118 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAE  118 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHH
Confidence            789999999999999999999998899999999875 4443

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.99  E-value=0.0041  Score=45.18  Aligned_cols=88  Identities=10%  Similarity=0.046  Sum_probs=55.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPW  145 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~  145 (240)
                      .|.+|+|+| +|.+|..-++.+...|++|+++.. +..+.+++++... ...+.     .+...-.++|+|+-+++.+..
T Consensus        12 ~~~~vlVvG-GG~va~rka~~Ll~~ga~V~VIsp-~~~~~l~~l~~i~-~~~~~-----~~~~dl~~a~lViaaT~d~e~   83 (157)
T PRK06719         12 HNKVVVIIG-GGKIAYRKASGLKDTGAFVTVVSP-EICKEMKELPYIT-WKQKT-----FSNDDIKDAHLIYAATNQHAV   83 (157)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEcC-ccCHHHHhccCcE-EEecc-----cChhcCCCceEEEECCCCHHH
Confidence            789999999 899999999988889999888853 3333344454222 11111     111122568999999987665


Q ss_pred             cccccCCCCCcEEEEe
Q 045248          146 STFEPNLGTNGKVIDI  161 (240)
Q Consensus       146 ~~~~~~l~~~G~iv~~  161 (240)
                      +..+...++.+.++..
T Consensus        84 N~~i~~~a~~~~~vn~   99 (157)
T PRK06719         84 NMMVKQAAHDFQWVNV   99 (157)
T ss_pred             HHHHHHHHHHCCcEEE
Confidence            5444444333334433

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.99  E-value=0.0069  Score=49.32  Aligned_cols=98  Identities=17%  Similarity=0.161  Sum_probs=63.6

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC--EEEEEeCc-ccHHHH----HhcCCCEEEeCCCCccccccC
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT--HVTASCGA-RNIEFV----KSLGADEVLDYKTPDGAALKS  127 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~~~-~~~~~~----~~~g~~~v~~~~~~~~~~~~~  127 (240)
                      +...+     +++++||.+| +| .|..++.+++..+.  +|++++.+ +..+.+    ++.|.+.+............ 
T Consensus        74 ~~L~i-----~~g~~VLDIG-~G-tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~-  145 (322)
T PRK13943         74 EWVGL-----DKGMRVLEIG-GG-TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP-  145 (322)
T ss_pred             HhcCC-----CCCCEEEEEe-CC-ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc-
Confidence            45556     7889999999 55 69999999998764  68888854 444333    45676543322111111111 


Q ss_pred             CCCCcccEEEeCCCCCC-ccccccCCCCCcEEEEe
Q 045248          128 PSGRKYDAVIHCATGIP-WSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       128 ~~~~~~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~  161 (240)
                       ....||+|+.+.+... ....++.|+++|+++..
T Consensus       146 -~~~~fD~Ii~~~g~~~ip~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        146 -EFAPYDVIFVTVGVDEVPETWFTQLKEGGRVIVP  179 (322)
T ss_pred             -ccCCccEEEECCchHHhHHHHHHhcCCCCEEEEE
Confidence             1246999999887533 45677899999998763

>PRK06953 short chain dehydrogenase; Provisional

Probab=96.98  E-value=0.0034  Score=48.23  Aligned_cols=75  Identities=25%  Similarity=0.329  Sum_probs=50.0

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCC-EEEeCCCCc--cccccCCCCCcccEEEeCCCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGAD-EVLDYKTPD--GAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~-~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      ++++|+|++|++|..+++.+...|++|+.+.++ +..+.++..+.. ...|..+..  ........+.++|+++.+.|.
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~ag~   80 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQALGAEALALDVADPASVAGLAWKLDGEALDAAVYVAGV   80 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHHhccceEEEecCCCHHHHHHHHHHhcCCCCCEEEECCCc
Confidence            478999999999999998888889999998865 555555555543 122222222  111122233579999999874

>PRK06196 oxidoreductase; Provisional

Probab=96.95  E-value=0.0029  Score=51.50  Aligned_cols=77  Identities=22%  Similarity=0.235  Sum_probs=49.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCCEEE--eCCCCc-c-ccccC--CCCCcccEEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGADEVL--DYKTPD-G-AALKS--PSGRKYDAVI  137 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~~v~--~~~~~~-~-~~~~~--~~~~~~d~v~  137 (240)
                      .+++++|+||+|++|..+++.+...|++|+.++++ ++.+.+ +++.....+  |..+.. . ..+..  ....++|++|
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~li  104 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRIDILI  104 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence            56899999999999999999888899999998875 443332 233212222  222221 1 11111  1125799999


Q ss_pred             eCCCC
Q 045248          138 HCATG  142 (240)
Q Consensus       138 d~~g~  142 (240)
                      .++|.
T Consensus       105 ~nAg~  109 (315)
T PRK06196        105 NNAGV  109 (315)
T ss_pred             ECCCC
Confidence            99983

>PRK07831 short chain dehydrogenase; Provisional

Probab=96.94  E-value=0.0024  Score=50.41  Aligned_cols=78  Identities=26%  Similarity=0.262  Sum_probs=49.7

Q ss_pred             CCCCeEEEEcCCc-hHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH----h-cCCCEE--E--eCCCCc--cccccC--CC
Q 045248           65 GQQKNILVTAASG-GVGHYAVQLAKLGNTHVTASCGA-RNIEFVK----S-LGADEV--L--DYKTPD--GAALKS--PS  129 (240)
Q Consensus        65 ~~g~~vlV~G~~g-~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~----~-~g~~~v--~--~~~~~~--~~~~~~--~~  129 (240)
                      .++++++|+|++| ++|.++++.+...|++|+.+++. ++.+...    + +|...+  +  |..+.+  ...++.  ..
T Consensus        15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   94 (262)
T PRK07831         15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVER   94 (262)
T ss_pred             cCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence            4678999999886 89999999999999999888864 4433332    2 453322  2  222221  111111  11


Q ss_pred             CCcccEEEeCCCC
Q 045248          130 GRKYDAVIHCATG  142 (240)
Q Consensus       130 ~~~~d~v~d~~g~  142 (240)
                      ..++|+++.+.|.
T Consensus        95 ~g~id~li~~ag~  107 (262)
T PRK07831         95 LGRLDVLVNNAGL  107 (262)
T ss_pred             cCCCCEEEECCCC
Confidence            2468999999984

>PRK05872 short chain dehydrogenase; Provisional

Probab=96.92  E-value=0.0023  Score=51.58  Aligned_cols=77  Identities=21%  Similarity=0.151  Sum_probs=50.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH-HHhcCCC-EE----EeCCCCc-c-ccccC--CCCCccc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF-VKSLGAD-EV----LDYKTPD-G-AALKS--PSGRKYD  134 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~-~~~~g~~-~v----~~~~~~~-~-~~~~~--~~~~~~d  134 (240)
                      .++++||+||+|++|..+++.+...|++|+.+.++ ++.+. .++++.. .+    .|..+.+ . ..+..  ....++|
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id   87 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGID   87 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            67899999999999999999999999999998875 44433 3445421 11    2323222 1 11111  0124699


Q ss_pred             EEEeCCCC
Q 045248          135 AVIHCATG  142 (240)
Q Consensus       135 ~v~d~~g~  142 (240)
                      ++|.+.|.
T Consensus        88 ~vI~nAG~   95 (296)
T PRK05872         88 VVVANAGI   95 (296)
T ss_pred             EEEECCCc
Confidence            99999984

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=96.92  E-value=0.011  Score=45.88  Aligned_cols=96  Identities=20%  Similarity=0.220  Sum_probs=65.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeC-cccHHHHH----hcCCCEEEeCCCCccccccCCCCCcccEEEe
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCG-ARNIEFVK----SLGADEVLDYKTPDGAALKSPSGRKYDAVIH  138 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~-~~~~~~~~----~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d  138 (240)
                      ++|.+||=+|  +|.|-.+..+++..|. +|++++- +.-++.++    +.|... +.+-..+...+. ..+..||++.-
T Consensus        50 ~~g~~vLDva--~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LP-f~D~sFD~vt~  125 (238)
T COG2226          50 KPGDKVLDVA--CGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLP-FPDNSFDAVTI  125 (238)
T ss_pred             CCCCEEEEec--CCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCC-CCCCccCEEEe
Confidence            5789998775  7789999999998886 9999995 45555554    333332 322222222222 23466899877


Q ss_pred             CCC-----C--CCccccccCCCCCcEEEEeCCC
Q 045248          139 CAT-----G--IPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       139 ~~g-----~--~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      +.|     .  ..+.++.+-|+|+|+++++...
T Consensus       126 ~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~  158 (238)
T COG2226         126 SFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFS  158 (238)
T ss_pred             eehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcC
Confidence            776     1  2277888999999998888743

>PRK07814 short chain dehydrogenase; Provisional

Probab=96.91  E-value=0.0035  Score=49.57  Aligned_cols=77  Identities=18%  Similarity=0.272  Sum_probs=49.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCC-EEE--eCCCCc--cccccCC--CCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGAD-EVL--DYKTPD--GAALKSP--SGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~-~v~--~~~~~~--~~~~~~~--~~~~~  133 (240)
                      +++++||+|++|++|..+++.+...|++|+.+.++ ++.+.+    ++.+.. ..+  |..++.  ...+...  .-.++
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   88 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFGRL   88 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            57899999999999999999999999999999875 443332    222322 222  222222  1111111  11469


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.++|.
T Consensus        89 d~vi~~Ag~   97 (263)
T PRK07814         89 DIVVNNVGG   97 (263)
T ss_pred             CEEEECCCC
Confidence            999999873

>PRK08339 short chain dehydrogenase; Provisional

Probab=96.90  E-value=0.0035  Score=49.62  Aligned_cols=77  Identities=17%  Similarity=0.229  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH-hc----CCC-EEE--eCCCCc--cccccC-CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK-SL----GAD-EVL--DYKTPD--GAALKS-PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~-~~----g~~-~v~--~~~~~~--~~~~~~-~~~~~~  133 (240)
                      .++++||+|+++++|.++++.+...|++|+.+.++ ++.+.+. ++    +.. ..+  |-.+..  ...+.. ..-.++
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~i   86 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEP   86 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCC
Confidence            57899999999999999999999999999998865 4433332 21    322 222  222222  111111 122469


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.+.|.
T Consensus        87 D~lv~nag~   95 (263)
T PRK08339         87 DIFFFSTGG   95 (263)
T ss_pred             cEEEECCCC
Confidence            999999984

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.88  E-value=0.0063  Score=46.30  Aligned_cols=90  Identities=13%  Similarity=0.152  Sum_probs=58.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc--ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA--RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~--~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      .|++|||+| +|.+|..-++.+...|++|+++++.  +..+.+.+.|....+. .+.....+     .++++|+-+.+.+
T Consensus         8 ~gk~vlVvG-gG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~-~~~~~~dl-----~~~~lVi~at~d~   80 (205)
T TIGR01470         8 EGRAVLVVG-GGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLA-RCFDADIL-----EGAFLVIAATDDE   80 (205)
T ss_pred             CCCeEEEEC-cCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEe-CCCCHHHh-----CCcEEEEECCCCH
Confidence            678999999 8999999999999999999988864  3444444444222221 22111111     4689999888875


Q ss_pred             C-ccccccCCCCCcEEEEeC
Q 045248          144 P-WSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       144 ~-~~~~~~~l~~~G~iv~~g  162 (240)
                      . -.......+..|..|.+-
T Consensus        81 ~ln~~i~~~a~~~~ilvn~~  100 (205)
T TIGR01470        81 ELNRRVAHAARARGVPVNVV  100 (205)
T ss_pred             HHHHHHHHHHHHcCCEEEEC
Confidence            3 334444555667666544

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.86  E-value=0.025  Score=45.15  Aligned_cols=96  Identities=20%  Similarity=0.214  Sum_probs=67.2

Q ss_pred             hhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCC
Q 045248           40 SGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYK  118 (240)
Q Consensus        40 a~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~  118 (240)
                      ...||+....+..+ +..++.    -.|++++|+|.+.-+|.-+..++...|++|+.+.+. ..++.             
T Consensus       136 ~~~PcTp~ai~~ll-~~~~i~----l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~~-------------  197 (286)
T PRK14175        136 TFVPCTPLGIMEIL-KHADID----LEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMAS-------------  197 (286)
T ss_pred             CCCCCcHHHHHHHH-HHcCCC----CCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHH-------------
Confidence            34577776666666 555543    389999999955559999999999999999888753 11110             


Q ss_pred             CCccccccCCCCCcccEEEeCCCCCC-ccccccCCCCCcEEEEeCCCc
Q 045248          119 TPDGAALKSPSGRKYDAVIHCATGIP-WSTFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~g~~~  165 (240)
                           ..     ...|+||-++|.+. +..  +.++++..++.+|...
T Consensus       198 -----~~-----~~ADIVIsAvg~p~~i~~--~~vk~gavVIDvGi~~  233 (286)
T PRK14175        198 -----YL-----KDADVIVSAVGKPGLVTK--DVVKEGAVIIDVGNTP  233 (286)
T ss_pred             -----HH-----hhCCEEEECCCCCcccCH--HHcCCCcEEEEcCCCc
Confidence                 00     34788888888764 333  4578888888888643

>PRK09072 short chain dehydrogenase; Provisional

Probab=96.85  E-value=0.0043  Score=49.00  Aligned_cols=77  Identities=19%  Similarity=0.251  Sum_probs=48.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH-hc--CC-CEEE--eCCCCc-c-ccccCC-CCCcccE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK-SL--GA-DEVL--DYKTPD-G-AALKSP-SGRKYDA  135 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~-~~--g~-~~v~--~~~~~~-~-~~~~~~-~~~~~d~  135 (240)
                      +++++||+||+|++|..+++.+...|++|++++++ ++.+.+. ++  +. ...+  |..+.. . ...+.. ...++|.
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~   83 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGINV   83 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCCE
Confidence            56789999999999999999888999999999975 4444332 22  21 1222  222211 0 111110 1256899


Q ss_pred             EEeCCCC
Q 045248          136 VIHCATG  142 (240)
Q Consensus       136 v~d~~g~  142 (240)
                      ++.++|.
T Consensus        84 lv~~ag~   90 (263)
T PRK09072         84 LINNAGV   90 (263)
T ss_pred             EEECCCC
Confidence            9999884

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=96.84  E-value=0.0043  Score=48.98  Aligned_cols=76  Identities=20%  Similarity=0.217  Sum_probs=49.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHh-cCCC-EEE--eCCCCc--cccccC--CCCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKS-LGAD-EVL--DYKTPD--GAALKS--PSGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~-~g~~-~v~--~~~~~~--~~~~~~--~~~~~~d~v  136 (240)
                      ++++++|+||+|++|..+++.+...|++|+.+.++ ++.+.+++ .+.. ..+  |..+..  ...++.  ..-.++|++
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l   83 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGKIDCL   83 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHhCCCCEE
Confidence            57899999999999999999999999999998865 44444443 2321 122  222211  111111  011468999


Q ss_pred             EeCCC
Q 045248          137 IHCAT  141 (240)
Q Consensus       137 ~d~~g  141 (240)
                      +.+.|
T Consensus        84 i~~Ag   88 (262)
T TIGR03325        84 IPNAG   88 (262)
T ss_pred             EECCC
Confidence            99987

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK06180 short chain dehydrogenase; Provisional

Probab=96.82  E-value=0.004  Score=49.64  Aligned_cols=77  Identities=19%  Similarity=0.145  Sum_probs=49.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhc-CC-CEEE--eCCCCc--cccccCC--CCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSL-GA-DEVL--DYKTPD--GAALKSP--SGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~-g~-~~v~--~~~~~~--~~~~~~~--~~~~~d~v  136 (240)
                      .++++||+|++|++|..+++.+...|++|++++++ ++.+.+.+. +. ...+  |..+..  ...++..  .-.++|++
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~v   82 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGPIDVL   82 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            46789999999999999999999899999999975 555444332 22 1122  222221  1111110  11358999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      +.+.|.
T Consensus        83 v~~ag~   88 (277)
T PRK06180         83 VNNAGY   88 (277)
T ss_pred             EECCCc
Confidence            999984

>PRK05867 short chain dehydrogenase; Provisional

Probab=96.82  E-value=0.0041  Score=48.78  Aligned_cols=77  Identities=18%  Similarity=0.157  Sum_probs=48.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCC-EEE--eCCCCc--cccccCC--CCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGAD-EVL--DYKTPD--GAALKSP--SGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~-~v~--~~~~~~--~~~~~~~--~~~~~  133 (240)
                      .++++||+|++|++|..+++.+...|++|+.+.++ ++.+.+    +..+.. ..+  |..+..  ...+...  .-.++
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   87 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGGI   87 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            57899999999999999999999999999998865 443333    223322 122  222221  1111110  11469


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.+.|.
T Consensus        88 d~lv~~ag~   96 (253)
T PRK05867         88 DIAVCNAGI   96 (253)
T ss_pred             CEEEECCCC
Confidence            999999873

>PRK06841 short chain dehydrogenase; Provisional

Probab=96.82  E-value=0.0028  Score=49.70  Aligned_cols=77  Identities=21%  Similarity=0.189  Sum_probs=48.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCE--EE--eCCCCc-c-ccccCC--CCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADE--VL--DYKTPD-G-AALKSP--SGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~--v~--~~~~~~-~-~~~~~~--~~~~~d~v  136 (240)
                      +++++||+||+|++|..+++.+...|++|+.+.++ +..+...+.....  .+  |..+.. . ..+...  ...++|++
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~v   93 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISAFGRIDIL   93 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            57899999999999999999888999999998875 3333333332211  22  222211 1 111111  12468999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      +.++|.
T Consensus        94 i~~ag~   99 (255)
T PRK06841         94 VNSAGV   99 (255)
T ss_pred             EECCCC
Confidence            999984

>PRK06194 hypothetical protein; Provisional

Probab=96.79  E-value=0.0044  Score=49.57  Aligned_cols=77  Identities=13%  Similarity=0.092  Sum_probs=48.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-H---hcCCC-EEEeCCCCccccc----cC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-K---SLGAD-EVLDYKTPDGAAL----KS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~---~~g~~-~v~~~~~~~~~~~----~~--~~~~~~  133 (240)
                      .++++||+||+|++|..+++.+...|++|+.+++. ++.+.. +   ..+.. .++..+-.+...+    ..  ...+++
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~i   84 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGAV   84 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            56889999999999999999999999999988864 333222 2   22332 1222221111111    10  112468


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.++|.
T Consensus        85 d~vi~~Ag~   93 (287)
T PRK06194         85 HLLFNNAGV   93 (287)
T ss_pred             CEEEECCCC
Confidence            999999984

>PRK12829 short chain dehydrogenase; Provisional

Probab=96.79  E-value=0.0052  Score=48.40  Aligned_cols=78  Identities=14%  Similarity=0.121  Sum_probs=50.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH-hcCCC--EEE--eCCCCc-c-ccccCC--CCCccc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK-SLGAD--EVL--DYKTPD-G-AALKSP--SGRKYD  134 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~-~~g~~--~v~--~~~~~~-~-~~~~~~--~~~~~d  134 (240)
                      -++.++||+||+|++|..+++.+...|++|+.+.++ +..+.+. +....  .++  |..++. . ..+...  .-.++|
T Consensus         9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   88 (264)
T PRK12829          9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFGGLD   88 (264)
T ss_pred             cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence            477899999999999999999999999999999875 4443332 22211  222  222222 1 111110  113699


Q ss_pred             EEEeCCCC
Q 045248          135 AVIHCATG  142 (240)
Q Consensus       135 ~v~d~~g~  142 (240)
                      +||.+.|.
T Consensus        89 ~vi~~ag~   96 (264)
T PRK12829         89 VLVNNAGI   96 (264)
T ss_pred             EEEECCCC
Confidence            99999985

>PRK06181 short chain dehydrogenase; Provisional

Probab=96.78  E-value=0.0096  Score=46.94  Aligned_cols=33  Identities=18%  Similarity=0.269  Sum_probs=30.1

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      +++||.|++|++|..+++.+...|++|+.++++
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~   34 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGAQLVLAARN   34 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            579999999999999999999999999999865

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.77  E-value=0.0041  Score=48.60  Aligned_cols=77  Identities=14%  Similarity=0.151  Sum_probs=49.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCCE-EE--eCCCCc-c-ccccCC--CCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGADE-VL--DYKTPD-G-AALKSP--SGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~~-v~--~~~~~~-~-~~~~~~--~~~~~  133 (240)
                      +++++||+|++|++|..+++.+...|++|+.++++ ++.+.+    +..+... .+  |..+.. . ..++..  ...++
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQL   83 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            57899999999999999999999999999888865 333322    3334431 22  212211 1 111111  11468


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |.+|.++|.
T Consensus        84 d~vi~~ag~   92 (253)
T PRK08217         84 NGLINNAGI   92 (253)
T ss_pred             CEEEECCCc
Confidence            999999983

>PRK07904 short chain dehydrogenase; Provisional

Probab=96.75  E-value=0.0065  Score=47.79  Aligned_cols=78  Identities=19%  Similarity=0.193  Sum_probs=48.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhC-CCEEEEEeCc-cc-HH----HHHhcCC--CEEE--eCCCCc--cccccC-CCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLG-NTHVTASCGA-RN-IE----FVKSLGA--DEVL--DYKTPD--GAALKS-PSG  130 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~-g~~v~~~~~~-~~-~~----~~~~~g~--~~v~--~~~~~~--~~~~~~-~~~  130 (240)
                      ..+++++|+||+|++|..+++-+... |++|+.+.++ ++ .+    .+++.+.  ..++  |..+..  ...++. ...
T Consensus         6 ~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~   85 (253)
T PRK07904          6 GNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAG   85 (253)
T ss_pred             CCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhc
Confidence            57789999999999999998876666 4899999865 33 33    2333342  1233  222222  111111 112


Q ss_pred             CcccEEEeCCCC
Q 045248          131 RKYDAVIHCATG  142 (240)
Q Consensus       131 ~~~d~v~d~~g~  142 (240)
                      .++|+++.+.|.
T Consensus        86 g~id~li~~ag~   97 (253)
T PRK07904         86 GDVDVAIVAFGL   97 (253)
T ss_pred             CCCCEEEEeeec
Confidence            479999988874

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=96.75  E-value=0.0047  Score=48.75  Aligned_cols=77  Identities=17%  Similarity=0.183  Sum_probs=49.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH-hcCCC-EEE--eCCCCc--cccccC--CCCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK-SLGAD-EVL--DYKTPD--GAALKS--PSGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~-~~g~~-~v~--~~~~~~--~~~~~~--~~~~~~d~v  136 (240)
                      ++++++|+||+|++|..+++.+...|++|+.+.++ ++.+.+. +++.. ..+  |..+..  ...++.  ....++|++
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l   84 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKLDCF   84 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            57899999999999999999999999999998875 4544443 33321 222  222211  111111  112468999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      +.++|.
T Consensus        85 i~~ag~   90 (263)
T PRK06200         85 VGNAGI   90 (263)
T ss_pred             EECCCC
Confidence            999983

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.75  E-value=0.0053  Score=53.17  Aligned_cols=71  Identities=11%  Similarity=0.047  Sum_probs=51.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      .++++|+|+| .|..|++++++++..|++|++.+.. .+.+.++++|.. ++.... ....+     ..+|+|+.+.|-+
T Consensus        10 ~~~~~v~V~G-~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~-~~~~~~-~~~~l-----~~~D~VV~SpGi~   81 (488)
T PRK03369         10 LPGAPVLVAG-AGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVA-TVSTSD-AVQQI-----ADYALVVTSPGFR   81 (488)
T ss_pred             cCCCeEEEEc-CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCE-EEcCcc-hHhHh-----hcCCEEEECCCCC
Confidence            5789999999 9999999999999999999998854 455556777763 332211 11111     3479999999843

>PRK07326 short chain dehydrogenase; Provisional

Probab=96.73  E-value=0.0059  Score=47.30  Aligned_cols=77  Identities=18%  Similarity=0.126  Sum_probs=48.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH-HHhcC---CCEEEe--CCCCc-c-ccccCC--CCCccc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF-VKSLG---ADEVLD--YKTPD-G-AALKSP--SGRKYD  134 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~-~~~~g---~~~v~~--~~~~~-~-~~~~~~--~~~~~d  134 (240)
                      .+.+++|+||+|++|..+++.+...|++|+++.++ ++.+. .+++.   ....+.  ..+.. . ..+...  ...++|
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   84 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGLD   84 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            56899999999999999998888889999999864 44332 23332   112222  22211 1 111110  113699


Q ss_pred             EEEeCCCC
Q 045248          135 AVIHCATG  142 (240)
Q Consensus       135 ~v~d~~g~  142 (240)
                      ++|.+.|.
T Consensus        85 ~vi~~ag~   92 (237)
T PRK07326         85 VLIANAGV   92 (237)
T ss_pred             EEEECCCC
Confidence            99999874

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=96.71  E-value=0.0046  Score=50.48  Aligned_cols=76  Identities=26%  Similarity=0.443  Sum_probs=48.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcC---CC-EEE--eCCCCc--cccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLG---AD-EVL--DYKTPD--GAALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g---~~-~v~--~~~~~~--~~~~~~--~~~~~~  133 (240)
                      ++++++|+||+|++|..+++.+...|++|+.++++ ++.+.+ +++.   .. ..+  |..+..  ......  ....++
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i   84 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKPL   84 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCCCc
Confidence            67899999999999999999888899999999875 443332 3332   11 122  222211  111111  123469


Q ss_pred             cEEEeCCC
Q 045248          134 DAVIHCAT  141 (240)
Q Consensus       134 d~v~d~~g  141 (240)
                      |++|.++|
T Consensus        85 D~li~nAg   92 (322)
T PRK07453         85 DALVCNAA   92 (322)
T ss_pred             cEEEECCc
Confidence            99999998

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.71  E-value=0.03  Score=44.76  Aligned_cols=76  Identities=12%  Similarity=0.079  Sum_probs=52.6

Q ss_pred             CCCCeEEEEcCCch-HHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           65 GQQKNILVTAASGG-VGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        65 ~~g~~vlV~G~~g~-vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      -.|++++|+| .|+ +|..+..++...|+.|+.+.+. ..+..+.+                     ..+|+++.++|.+
T Consensus       157 l~Gk~vvViG-~gg~vGkpia~~L~~~gatVtv~~~~-t~~L~~~~---------------------~~aDIvI~AtG~~  213 (283)
T PRK14192        157 LAGKHAVVVG-RSAILGKPMAMMLLNANATVTICHSR-TQNLPELV---------------------KQADIIVGAVGKP  213 (283)
T ss_pred             CCCCEEEEEC-CcHHHHHHHHHHHHhCCCEEEEEeCC-chhHHHHh---------------------ccCCEEEEccCCC
Confidence            4889999999 565 9999999999999976666542 11111111                     3588999999864


Q ss_pred             CccccccCCCCCcEEEEeCCC
Q 045248          144 PWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       144 ~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      .+ --.+.++++..++.+|..
T Consensus       214 ~~-v~~~~lk~gavViDvg~n  233 (283)
T PRK14192        214 EL-IKKDWIKQGAVVVDAGFH  233 (283)
T ss_pred             Cc-CCHHHcCCCCEEEEEEEe
Confidence            42 223568888888888754

>PRK06500 short chain dehydrogenase; Provisional

Probab=96.69  E-value=0.0064  Score=47.42  Aligned_cols=77  Identities=22%  Similarity=0.214  Sum_probs=49.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH-HHhcCCCE-EE--eCCCCc-c-ccccC--CCCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF-VKSLGADE-VL--DYKTPD-G-AALKS--PSGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~-~~~~g~~~-v~--~~~~~~-~-~~~~~--~~~~~~d~v  136 (240)
                      ++++++|.||+|++|..+++.+...|++|+.++++ ++.+. .++++... .+  |..+.. . ...+.  ....++|++
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   84 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRLDAV   84 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            56899999999999999999999999999998865 33333 34555432 22  222211 1 11111  112468999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      +.+.|.
T Consensus        85 i~~ag~   90 (249)
T PRK06500         85 FINAGV   90 (249)
T ss_pred             EECCCC
Confidence            999874

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.69  E-value=0.008  Score=45.63  Aligned_cols=91  Identities=10%  Similarity=-0.005  Sum_probs=55.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcc--cHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGAR--NIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~--~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      .+++|||+| +|.+|...++.+...|++|+++.++-  ....+.+.+... +........     .-.++|+||-+++.+
T Consensus         9 ~~k~vLVIG-gG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~-~~~~~~~~~-----~l~~adlViaaT~d~   81 (202)
T PRK06718          9 SNKRVVIVG-GGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIR-WKQKEFEPS-----DIVDAFLVIAATNDP   81 (202)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEE-EEecCCChh-----hcCCceEEEEcCCCH
Confidence            788999999 89999999988888999998887542  222222223211 111111111     124689999999876


Q ss_pred             CccccccCCCCCcEEEEeCC
Q 045248          144 PWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       144 ~~~~~~~~l~~~G~iv~~g~  163 (240)
                      .++..+...+..+.++..-.
T Consensus        82 elN~~i~~~a~~~~lvn~~d  101 (202)
T PRK06718         82 RVNEQVKEDLPENALFNVIT  101 (202)
T ss_pred             HHHHHHHHHHHhCCcEEECC
Confidence            65544443334455555543

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=96.68  E-value=0.022  Score=39.11  Aligned_cols=92  Identities=17%  Similarity=0.237  Sum_probs=58.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCC-CEEEEEeCc-ccHHHH----HhcCCCE--EEeCCCCccccccCCCCCcccEE
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGN-THVTASCGA-RNIEFV----KSLGADE--VLDYKTPDGAALKSPSGRKYDAV  136 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g-~~v~~~~~~-~~~~~~----~~~g~~~--v~~~~~~~~~~~~~~~~~~~d~v  136 (240)
                      .++++++-+| +|. |..+..+++..+ .+|++++.+ ...+.+    +.++...  ++..+..  .... .....+|+|
T Consensus        18 ~~~~~vldlG-~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~D~v   92 (124)
T TIGR02469        18 RPGDVLWDIG-AGS-GSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAP--EALE-DSLPEPDRV   92 (124)
T ss_pred             CCCCEEEEeC-CCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecccc--ccCh-hhcCCCCEE
Confidence            6778999999 655 888999998875 599999954 444444    3444332  2211111  0011 122479999


Q ss_pred             EeCCCCC----CccccccCCCCCcEEEEe
Q 045248          137 IHCATGI----PWSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       137 ~d~~g~~----~~~~~~~~l~~~G~iv~~  161 (240)
                      +-..+..    .++.+.+.|+++|.++..
T Consensus        93 ~~~~~~~~~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        93 FIGGSGGLLQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             EECCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence            8765432    377788899999998754

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=96.68  E-value=0.006  Score=51.26  Aligned_cols=36  Identities=22%  Similarity=0.303  Sum_probs=32.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ..+.+|||+||+|.+|..+++.+...|.+|++++++
T Consensus        58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~   93 (390)
T PLN02657         58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVARE   93 (390)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEec
Confidence            467899999999999999999998899999999864

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.68  E-value=0.01  Score=53.17  Aligned_cols=76  Identities=16%  Similarity=0.184  Sum_probs=53.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcc----------------------cHHHHHhcCCCEEEeCCCCccc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGAR----------------------NIEFVKSLGADEVLDYKTPDGA  123 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~----------------------~~~~~~~~g~~~v~~~~~~~~~  123 (240)
                      .+++|+|+| +|+.|+.+...+...|.+|++..+..                      +.+.++++|.+..++..-....
T Consensus       309 ~~kkVaIIG-~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~  387 (639)
T PRK12809        309 RSEKVAVIG-AGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDI  387 (639)
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcC
Confidence            589999999 89999999999999999988887542                      3456678887655443221111


Q ss_pred             cccCCCCCcccEEEeCCCCC
Q 045248          124 ALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus       124 ~~~~~~~~~~d~v~d~~g~~  143 (240)
                      .+.. ...++|.||.++|..
T Consensus       388 ~~~~-l~~~~DaV~latGa~  406 (639)
T PRK12809        388 TFSD-LTSEYDAVFIGVGTY  406 (639)
T ss_pred             CHHH-HHhcCCEEEEeCCCC
Confidence            1111 124699999999963

>PRK07109 short chain dehydrogenase; Provisional

Probab=96.67  E-value=0.007  Score=49.77  Aligned_cols=77  Identities=18%  Similarity=0.241  Sum_probs=50.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH----HHhcCCCEE-E--eCCCCc-c-ccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF----VKSLGADEV-L--DYKTPD-G-AALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~----~~~~g~~~v-~--~~~~~~-~-~~~~~--~~~~~~  133 (240)
                      .+++++|+||+|++|..+++.+...|++|+.++++ ++.+.    +++.|.... +  |..+.. . ...+.  ..-.++
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~i   86 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGPI   86 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCCC
Confidence            56899999999999999999999999999998875 44332    234454322 2  222222 1 11111  011469


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |++|+++|.
T Consensus        87 D~lInnAg~   95 (334)
T PRK07109         87 DTWVNNAMV   95 (334)
T ss_pred             CEEEECCCc
Confidence            999999984

>PRK07677 short chain dehydrogenase; Provisional

Probab=96.66  E-value=0.0051  Score=48.21  Aligned_cols=76  Identities=18%  Similarity=0.284  Sum_probs=47.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCC-EEE--eCCCCc-c-ccccCC--CCCccc
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGAD-EVL--DYKTPD-G-AALKSP--SGRKYD  134 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~-~v~--~~~~~~-~-~~~~~~--~~~~~d  134 (240)
                      +++++|.|++|++|..+++.+...|++|++++++ ++.+.+    ++.+.. ..+  |..++. . ..+...  .-.++|
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRID   80 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCcc
Confidence            4689999999999999999999999999998864 433333    223322 223  222221 1 111111  114689


Q ss_pred             EEEeCCCC
Q 045248          135 AVIHCATG  142 (240)
Q Consensus       135 ~v~d~~g~  142 (240)
                      +++.+.|.
T Consensus        81 ~lI~~ag~   88 (252)
T PRK07677         81 ALINNAAG   88 (252)
T ss_pred             EEEECCCC
Confidence            99999873

>PRK07478 short chain dehydrogenase; Provisional

Probab=96.65  E-value=0.0073  Score=47.36  Aligned_cols=77  Identities=19%  Similarity=0.250  Sum_probs=49.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCCE-EE--eCCCCc--cccccCC--CCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGADE-VL--DYKTPD--GAALKSP--SGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~~-v~--~~~~~~--~~~~~~~--~~~~~  133 (240)
                      .+++++|+|++|++|..+++.+...|++|+.++++ ++.+.+    ++.+... .+  |..+.+  ...++..  .-.++
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGGL   84 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            56899999999999999999999999999999864 443332    3334322 22  222221  1111110  12369


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.++|.
T Consensus        85 d~li~~ag~   93 (254)
T PRK07478         85 DIAFNNAGT   93 (254)
T ss_pred             CEEEECCCC
Confidence            999999984

>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function

Probab=96.64  E-value=0.02  Score=46.16  Aligned_cols=92  Identities=25%  Similarity=0.275  Sum_probs=66.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHH-hCCC-EEEEEeCcccHHHHHhcCC-CEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAK-LGNT-HVTASCGARNIEFVKSLGA-DEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~-~~g~-~v~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      ..+.|+|..|++-.++.+...++ ..+. +++.+++.....+.+.+|. +.|+.|++-+     ......--+++|+.|+
T Consensus       135 ga~~vvl~SASSKTA~glA~~L~~~~~~~~~vglTS~~N~~Fve~lg~Yd~V~~Yd~i~-----~l~~~~~~v~VDfaG~  209 (314)
T PF11017_consen  135 GAAQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLTSARNVAFVESLGCYDEVLTYDDID-----SLDAPQPVVIVDFAGN  209 (314)
T ss_pred             CccEEEEeccchHHHHHHHHHhhccCCCceEEEEecCcchhhhhccCCceEEeehhhhh-----hccCCCCEEEEECCCC
Confidence            45788888989989998888888 4554 9999999999999999995 7888776532     1222456689999998


Q ss_pred             CC-ccccccCCCCCc-EEEEeC
Q 045248          143 IP-WSTFEPNLGTNG-KVIDIT  162 (240)
Q Consensus       143 ~~-~~~~~~~l~~~G-~iv~~g  162 (240)
                      .. ...+-+.++..= ..+.+|
T Consensus       210 ~~~~~~Lh~~l~d~l~~~~~VG  231 (314)
T PF11017_consen  210 GEVLAALHEHLGDNLVYSCLVG  231 (314)
T ss_pred             HHHHHHHHHHHhhhhhEEEEEE
Confidence            55 444555555542 455555

>PRK08267 short chain dehydrogenase; Provisional

Probab=96.63  E-value=0.0084  Score=47.22  Aligned_cols=75  Identities=24%  Similarity=0.228  Sum_probs=48.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH-hcC-C-CEEE--eCCCCc--cccccCC---CCCcccEE
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK-SLG-A-DEVL--DYKTPD--GAALKSP---SGRKYDAV  136 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~-~~g-~-~~v~--~~~~~~--~~~~~~~---~~~~~d~v  136 (240)
                      +++||+||+|++|..+++.+...|++|+.+.++ ++.+.+. ..+ . ..++  |..+..  ...+...   ...++|++
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~v   81 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDVL   81 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEE
Confidence            579999999999999999888899999999865 4444443 232 1 1222  333222  1111111   13579999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      +.++|.
T Consensus        82 i~~ag~   87 (260)
T PRK08267         82 FNNAGI   87 (260)
T ss_pred             EECCCC
Confidence            999984

>PRK12939 short chain dehydrogenase; Provisional

Probab=96.59  E-value=0.0085  Score=46.73  Aligned_cols=77  Identities=18%  Similarity=0.209  Sum_probs=48.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCC-EEE--eCCCCc--cccccCC--CCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGAD-EVL--DYKTPD--GAALKSP--SGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~-~v~--~~~~~~--~~~~~~~--~~~~~  133 (240)
                      ++++++|+|++|++|..++..+...|++|+++.++ ++.+..    +..+.. .++  |..+..  ...++..  .-.++
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   85 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGL   85 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            57899999999999999999999999999988864 433322    233332 222  222221  1111111  11479


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.++|.
T Consensus        86 d~vi~~ag~   94 (250)
T PRK12939         86 DGLVNNAGI   94 (250)
T ss_pred             CEEEECCCC
Confidence            999999984

>PRK07063 short chain dehydrogenase; Provisional

Probab=96.57  E-value=0.0081  Score=47.29  Aligned_cols=35  Identities=23%  Similarity=0.148  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .+++++|.|++|++|..+++.+...|++|+.+.++
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~   40 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLD   40 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999999999999999999999999998864

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=96.57  E-value=0.0096  Score=46.46  Aligned_cols=77  Identities=21%  Similarity=0.167  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcc--c-HHHHHhcCCC-EEE--eCCCCc-c-ccccC--CCCCcccE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGAR--N-IEFVKSLGAD-EVL--DYKTPD-G-AALKS--PSGRKYDA  135 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~--~-~~~~~~~g~~-~v~--~~~~~~-~-~~~~~--~~~~~~d~  135 (240)
                      .+++++|+|++|++|..+++.+...|++|+.++++.  + .+.+++.+.. ..+  |..+.+ . ..++.  ....++|+
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~   83 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFGHIDI   83 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            678999999999999999999999999999988643  1 2333444432 222  222221 1 11111  11246999


Q ss_pred             EEeCCCC
Q 045248          136 VIHCATG  142 (240)
Q Consensus       136 v~d~~g~  142 (240)
                      ++.+.|.
T Consensus        84 li~~ag~   90 (248)
T TIGR01832        84 LVNNAGI   90 (248)
T ss_pred             EEECCCC
Confidence            9999874

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK07825 short chain dehydrogenase; Provisional

Probab=96.55  E-value=0.012  Score=46.67  Aligned_cols=77  Identities=17%  Similarity=0.094  Sum_probs=49.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCCEEE--eCCCCcc--ccccC--CCCCcccEEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGADEVL--DYKTPDG--AALKS--PSGRKYDAVI  137 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~~v~--~~~~~~~--~~~~~--~~~~~~d~v~  137 (240)
                      .+++++|+||+|++|..+++.+...|++|+.+.++ ++.+.+ ++++...++  |..+.+.  ..+..  ..-.++|+++
T Consensus         4 ~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li   83 (273)
T PRK07825          4 RGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPIDVLV   83 (273)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            46799999999999999998888899999888865 444433 444422222  3333221  11111  1114699999


Q ss_pred             eCCCC
Q 045248          138 HCATG  142 (240)
Q Consensus       138 d~~g~  142 (240)
                      .+.|.
T Consensus        84 ~~ag~   88 (273)
T PRK07825         84 NNAGV   88 (273)
T ss_pred             ECCCc
Confidence            99984

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=96.55  E-value=0.053  Score=43.16  Aligned_cols=91  Identities=12%  Similarity=0.149  Sum_probs=56.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHH-HHHhc---CCCEEEeCCCCccccccCCCCCcccEEEeC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIE-FVKSL---GADEVLDYKTPDGAALKSPSGRKYDAVIHC  139 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~-~~~~~---g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~  139 (240)
                      ..+++++|+| +|++|.+++..+...|++|+++.++ ++.+ .++++   |....+...+        .....+|+|++|
T Consensus       115 ~~~k~vliiG-aGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~--------~~~~~~DivIna  185 (270)
T TIGR00507       115 RPNQRVLIIG-AGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDE--------LPLHRVDLIINA  185 (270)
T ss_pred             ccCCEEEEEc-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhh--------hcccCccEEEEC
Confidence            4578999999 6999999998888889988888765 4433 33333   2212221111        111358999999


Q ss_pred             CCCCC---cc---ccccCCCCCcEEEEeCCC
Q 045248          140 ATGIP---WS---TFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       140 ~g~~~---~~---~~~~~l~~~G~iv~~g~~  164 (240)
                      ++...   ..   .....++++..++.+...
T Consensus       186 tp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~  216 (270)
T TIGR00507       186 TSAGMSGNIDEPPVPAEKLKEGMVVYDMVYN  216 (270)
T ss_pred             CCCCCCCCCCCCCCCHHHcCCCCEEEEeccC
Confidence            97521   11   112346676677766543

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=96.55  E-value=0.024  Score=47.88  Aligned_cols=72  Identities=11%  Similarity=0.172  Sum_probs=49.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccH-HHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNI-EFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~-~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      .+.+++|+| +|++|.+++..+...|+ +++++.++ ++. +.+++++...++.+.+. ...+     ..+|+||.|++.
T Consensus       180 ~~kkvlviG-aG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l-~~~l-----~~aDiVI~aT~a  252 (414)
T PRK13940        180 SSKNVLIIG-AGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSEL-PQLI-----KKADIIIAAVNV  252 (414)
T ss_pred             cCCEEEEEc-CcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHH-HHHh-----ccCCEEEECcCC
Confidence            678999999 89999999999999998 67777765 443 44455652233332211 1111     348999999997


Q ss_pred             CC
Q 045248          143 IP  144 (240)
Q Consensus       143 ~~  144 (240)
                      +.
T Consensus       253 ~~  254 (414)
T PRK13940        253 LE  254 (414)
T ss_pred             CC
Confidence            55

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.53  E-value=0.0092  Score=51.41  Aligned_cols=77  Identities=17%  Similarity=0.169  Sum_probs=52.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcc----------------------cHHHHHhcCCCEEEeCCCCcc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGAR----------------------NIEFVKSLGADEVLDYKTPDG  122 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~----------------------~~~~~~~~g~~~v~~~~~~~~  122 (240)
                      +.+++|+|+| +|+.|+.+...++..|.+|+......                      ..+.++++|.+..++......
T Consensus       139 ~~~~~V~IIG-~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~  217 (467)
T TIGR01318       139 PTGKRVAVIG-AGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD  217 (467)
T ss_pred             CCCCeEEEEC-CCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc
Confidence            4688999999 89999999999999999988877432                      245667888764443321111


Q ss_pred             ccccCCCCCcccEEEeCCCCC
Q 045248          123 AALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus       123 ~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      ...... ..++|.||.++|..
T Consensus       218 ~~~~~~-~~~~D~vilAtGa~  237 (467)
T TIGR01318       218 ISLDDL-LEDYDAVFLGVGTY  237 (467)
T ss_pred             cCHHHH-HhcCCEEEEEeCCC
Confidence            011111 13699999999963

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>CHL00194 ycf39 Ycf39; Provisional

Probab=96.53  E-value=0.0099  Score=48.43  Aligned_cols=71  Identities=28%  Similarity=0.368  Sum_probs=47.6

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEE-eCCCCccccccCCCCCcccEEEeCCCC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVL-DYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~-~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      +|+|+||+|-+|..+++.+...|.+|.+++++ ++...+...+.+.+. |..+.. ......  .++|+||.+++.
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~-~l~~al--~g~d~Vi~~~~~   74 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPE-TLPPSF--KGVTAIIDASTS   74 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHH-HHHHHH--CCCCEEEECCCC
Confidence            69999999999999999999899999999975 444444445544322 222221 111111  368999998763

>PRK08265 short chain dehydrogenase; Provisional

Probab=96.51  E-value=0.0086  Score=47.27  Aligned_cols=77  Identities=17%  Similarity=0.122  Sum_probs=50.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH-HHhcCCC-EEE--eCCCCc--cccccC--CCCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF-VKSLGAD-EVL--DYKTPD--GAALKS--PSGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~-~~~~g~~-~v~--~~~~~~--~~~~~~--~~~~~~d~v  136 (240)
                      .+++++|.|++|++|..+++.+...|++|+.++++ ++.+. .++++.. ..+  |..+..  ...++.  ..-..+|++
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~l   84 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDIL   84 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            56899999999999999999999999999999875 43333 3444532 222  222221  111111  112468999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      +.+.|.
T Consensus        85 v~~ag~   90 (261)
T PRK08265         85 VNLACT   90 (261)
T ss_pred             EECCCC
Confidence            999873

>PRK12828 short chain dehydrogenase; Provisional

Probab=96.51  E-value=0.0076  Score=46.57  Aligned_cols=35  Identities=20%  Similarity=0.235  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      +++++||+|++|++|..+++.+...|++|+.+.++
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~   40 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGARVALIGRG   40 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCC
Confidence            57899999999999999999888889999999874

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=96.50  E-value=0.0095  Score=46.76  Aligned_cols=77  Identities=16%  Similarity=0.130  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcc--c-HHHHHhcCCCE-EE--eCCCCc--cccccC--CCCCcccE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGAR--N-IEFVKSLGADE-VL--DYKTPD--GAALKS--PSGRKYDA  135 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~--~-~~~~~~~g~~~-v~--~~~~~~--~~~~~~--~~~~~~d~  135 (240)
                      .+++++|+||++++|.++++.+...|++|+.+.+.+  + .+..++.+... .+  |..+..  ...++.  ..-+++|+
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iD~   86 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMGHIDI   86 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            678999999999999999999999999998887542  1 23334455321 22  222222  111111  11246999


Q ss_pred             EEeCCCC
Q 045248          136 VIHCATG  142 (240)
Q Consensus       136 v~d~~g~  142 (240)
                      ++.+.|.
T Consensus        87 lv~~ag~   93 (251)
T PRK12481         87 LINNAGI   93 (251)
T ss_pred             EEECCCc
Confidence            9999883

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.50  E-value=0.015  Score=46.22  Aligned_cols=76  Identities=22%  Similarity=0.270  Sum_probs=51.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHH----HHHhcCCCE-EE----eCCCCc--ccccc--CCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIE----FVKSLGADE-VL----DYKTPD--GAALK--SPSGR  131 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~----~~~~~g~~~-v~----~~~~~~--~~~~~--~~~~~  131 (240)
                      .++.|+|+||++|+|.+++.-....|++++.+++. ++++    .+++.++.. ++    |-.+.+  ...++  ...-+
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg   90 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFG   90 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcC
Confidence            78999999999999999988888999988888853 5544    445555433 32    222222  11111  12346


Q ss_pred             cccEEEeCCC
Q 045248          132 KYDAVIHCAT  141 (240)
Q Consensus       132 ~~d~v~d~~g  141 (240)
                      ++|+.++..|
T Consensus        91 ~vDvLVNNAG  100 (282)
T KOG1205|consen   91 RVDVLVNNAG  100 (282)
T ss_pred             CCCEEEecCc
Confidence            7999999998

>PLN02253 xanthoxin dehydrogenase

Probab=96.49  E-value=0.0097  Score=47.44  Aligned_cols=35  Identities=26%  Similarity=0.203  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .+++++|+||+|++|.++++.+...|++|+.+.+.
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~   51 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQ   51 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence            57899999999999999998888899999998864

>PRK06197 short chain dehydrogenase; Provisional

Probab=96.49  E-value=0.0092  Score=48.32  Aligned_cols=35  Identities=20%  Similarity=0.228  Sum_probs=31.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .+++++|+||+|++|..+++.+...|++|+.++++
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~   49 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRN   49 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            67899999999999999999888889999988864

>PRK07774 short chain dehydrogenase; Provisional

Probab=96.48  E-value=0.012  Score=46.04  Aligned_cols=35  Identities=23%  Similarity=0.266  Sum_probs=31.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .+++++|+|++|++|..+++.+...|++|+.+.++
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~   39 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGASVVVADIN   39 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            56889999999999999999888899999999875

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=96.47  E-value=0.014  Score=49.10  Aligned_cols=76  Identities=22%  Similarity=0.224  Sum_probs=47.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH-HHhcCC-CEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF-VKSLGA-DEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~-~~~~g~-~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      .+++++|.||+|++|.++++.+...|++|+++++. ++.+. ..+.+. ...+..+-.+...+.... +++|+++.+.|.
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l-~~IDiLInnAGi  255 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAELL-EKVDILIINHGI  255 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHh-CCCCEEEECCCc
Confidence            57899999999999999999888899999998864 33322 111111 122222111211111111 369999998874

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=96.47  E-value=0.011  Score=46.54  Aligned_cols=34  Identities=9%  Similarity=0.027  Sum_probs=30.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ++++||+|++|++|..+++.+...|++|+.+.++
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~   35 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADIN   35 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            4689999999999999999998899999998864

>PRK05875 short chain dehydrogenase; Provisional

Probab=96.47  E-value=0.0088  Score=47.55  Aligned_cols=35  Identities=20%  Similarity=0.198  Sum_probs=32.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      +++++||.|++|++|..+++.+...|++|+.+.++
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~   40 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRN   40 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence            57899999999999999999999999999999864

>PRK08628 short chain dehydrogenase; Provisional

Probab=96.47  E-value=0.0087  Score=47.03  Aligned_cols=77  Identities=17%  Similarity=0.186  Sum_probs=48.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH---hcCCC-EEE--eCCCCc--cccccC--CCCCccc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK---SLGAD-EVL--DYKTPD--GAALKS--PSGRKYD  134 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~---~~g~~-~v~--~~~~~~--~~~~~~--~~~~~~d  134 (240)
                      .++++||+||+|++|..+++.+...|++|+.+.++ ++.+..+   +.+.. ..+  |..+..  ...+..  ....++|
T Consensus         6 ~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   85 (258)
T PRK08628          6 KDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFGRID   85 (258)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCCC
Confidence            67899999999999999998888899998888864 3333333   33432 222  222211  111111  0114789


Q ss_pred             EEEeCCCC
Q 045248          135 AVIHCATG  142 (240)
Q Consensus       135 ~v~d~~g~  142 (240)
                      +++.++|.
T Consensus        86 ~vi~~ag~   93 (258)
T PRK08628         86 GLVNNAGV   93 (258)
T ss_pred             EEEECCcc
Confidence            99999983

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=96.46  E-value=0.011  Score=46.55  Aligned_cols=74  Identities=26%  Similarity=0.245  Sum_probs=46.3

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCCEEEeC--CCCc--cccccC--CCCCcccEEE
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGADEVLDY--KTPD--GAALKS--PSGRKYDAVI  137 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~~v~~~--~~~~--~~~~~~--~~~~~~d~v~  137 (240)
                      ++||+|+++++|..+++.+...|++|+.+.++ ++.+.+    ++.+....+..  .+..  ...++.  ....++|+++
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~li   81 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDALV   81 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            68999999999999999999999999998865 333222    22332223322  2211  111111  1124699999


Q ss_pred             eCCCC
Q 045248          138 HCATG  142 (240)
Q Consensus       138 d~~g~  142 (240)
                      .+.|.
T Consensus        82 ~naG~   86 (259)
T PRK08340         82 WNAGN   86 (259)
T ss_pred             ECCCC
Confidence            99884

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.46  E-value=0.016  Score=46.15  Aligned_cols=77  Identities=19%  Similarity=0.158  Sum_probs=48.3

Q ss_pred             CCCeEEEEcCCc--hHHHHHHHHHHhCCCEEEEEeCcc-cH---HHH-HhcCCCEEE--eCCCCc--cccccC--CCCCc
Q 045248           66 QQKNILVTAASG--GVGHYAVQLAKLGNTHVTASCGAR-NI---EFV-KSLGADEVL--DYKTPD--GAALKS--PSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g--~vG~~~~~~a~~~g~~v~~~~~~~-~~---~~~-~~~g~~~v~--~~~~~~--~~~~~~--~~~~~  132 (240)
                      +++++||+||++  ++|.++++.+...|++|+.+.+++ ..   +.+ ++.|....+  |-.+..  ...++.  ..-++
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   85 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKWGK   85 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence            578999999876  999999999999999998887542 12   222 344543223  222221  111111  11247


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|++++++|.
T Consensus        86 iD~lVnnAG~   95 (271)
T PRK06505         86 LDFVVHAIGF   95 (271)
T ss_pred             CCEEEECCcc
Confidence            9999999983

>PRK07454 short chain dehydrogenase; Provisional

Probab=96.46  E-value=0.012  Score=45.75  Aligned_cols=78  Identities=18%  Similarity=0.213  Sum_probs=49.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCC-EEE--eCCCCc--cccccCC--CCCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGAD-EVL--DYKTPD--GAALKSP--SGRK  132 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~-~v~--~~~~~~--~~~~~~~--~~~~  132 (240)
                      ...++++|.|++|++|..++..+...|++|+++.++ ++.+.+    ++.+.. ..+  |..+.+  ...++..  ...+
T Consensus         4 ~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (241)
T PRK07454          4 NSMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGC   83 (241)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            456789999999999999999999999999999975 333332    222322 122  222221  1111110  1235


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.+.|.
T Consensus        84 id~lv~~ag~   93 (241)
T PRK07454         84 PDVLINNAGM   93 (241)
T ss_pred             CCEEEECCCc
Confidence            8999999984

>PRK08264 short chain dehydrogenase; Validated

Probab=96.44  E-value=0.0097  Score=46.13  Aligned_cols=72  Identities=25%  Similarity=0.269  Sum_probs=47.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHHHHHhcCCC-EEE--eCCCCc-cc-cccCCCCCcccEEEe
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNIEFVKSLGAD-EVL--DYKTPD-GA-ALKSPSGRKYDAVIH  138 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~-~v~--~~~~~~-~~-~~~~~~~~~~d~v~d  138 (240)
                      .+++++|+||+|++|..+++.+...|+ +|+.+.++ ++.+.   .+.. .++  |..+.+ .. ..+.  -..+|++|.
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~--~~~id~vi~   79 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD---LGPRVVPLQLDVTDPASVAAAAEA--ASDVTILVN   79 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh---cCCceEEEEecCCCHHHHHHHHHh--cCCCCEEEE
Confidence            568899999999999999999999999 99888875 33332   3322 222  222211 11 1121  135899999


Q ss_pred             CCCC
Q 045248          139 CATG  142 (240)
Q Consensus       139 ~~g~  142 (240)
                      ++|.
T Consensus        80 ~ag~   83 (238)
T PRK08264         80 NAGI   83 (238)
T ss_pred             CCCc
Confidence            9985

>PRK06483 dihydromonapterin reductase; Provisional

Probab=96.44  E-value=0.012  Score=45.59  Aligned_cols=75  Identities=23%  Similarity=0.227  Sum_probs=48.8

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-c-cHHHHHhcCCCEEE--eCCCCc--cccccCC--CCCcccEEEe
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-R-NIEFVKSLGADEVL--DYKTPD--GAALKSP--SGRKYDAVIH  138 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~-~~~~~~~~g~~~v~--~~~~~~--~~~~~~~--~~~~~d~v~d  138 (240)
                      ++++||.|++|++|..+++.+...|++|+.+.++ + ..+.+++.|.. .+  |..+.+  ...+...  ...++|+++.
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~   80 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAIDGLRQAGAQ-CIQADFSTNAGIMAFIDELKQHTDGLRAIIH   80 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHHHHHHHcCCE-EEEcCCCCHHHHHHHHHHHHhhCCCccEEEE
Confidence            4689999999999999999998999999998864 2 33444555532 22  222221  1111111  1246899999


Q ss_pred             CCCC
Q 045248          139 CATG  142 (240)
Q Consensus       139 ~~g~  142 (240)
                      +.|.
T Consensus        81 ~ag~   84 (236)
T PRK06483         81 NASD   84 (236)
T ss_pred             CCcc
Confidence            9873

>PRK06138 short chain dehydrogenase; Provisional

Probab=96.42  E-value=0.011  Score=46.15  Aligned_cols=35  Identities=20%  Similarity=0.266  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ++++++|.|++|++|..+++.+...|++|+.+.++
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~   38 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGARVVVADRD   38 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCC
Confidence            56899999999999999998888889999999865

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.41  E-value=0.018  Score=46.00  Aligned_cols=91  Identities=15%  Similarity=0.127  Sum_probs=56.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHHHH-HhcCCCEE-EeCCCCccccccCCCCC-cccEEEeC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNIEFV-KSLGADEV-LDYKTPDGAALKSPSGR-KYDAVIHC  139 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~~~-~~~g~~~v-~~~~~~~~~~~~~~~~~-~~d~v~d~  139 (240)
                      .++++++|.| +||.+.+++.-++..|+ +++++.|+ +|.+.+ +.++.... +....     ....... .+|+++++
T Consensus       124 ~~~~~vlilG-AGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~-----~~~~~~~~~~dliINa  197 (283)
T COG0169         124 VTGKRVLILG-AGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAA-----LADLEGLEEADLLINA  197 (283)
T ss_pred             cCCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccccccccc-----ccccccccccCEEEEC
Confidence            4689999999 89999999999999997 78888875 665555 34442111 10110     0001111 59999999


Q ss_pred             CCCCC-------ccccccCCCCCcEEEEeC
Q 045248          140 ATGIP-------WSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       140 ~g~~~-------~~~~~~~l~~~G~iv~~g  162 (240)
                      ++...       ... ..++++.-.+..+-
T Consensus       198 Tp~Gm~~~~~~~~~~-~~~l~~~~~v~D~v  226 (283)
T COG0169         198 TPVGMAGPEGDSPVP-AELLPKGAIVYDVV  226 (283)
T ss_pred             CCCCCCCCCCCCCCc-HHhcCcCCEEEEec
Confidence            96211       111 34566666665554

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.41  E-value=0.014  Score=46.28  Aligned_cols=76  Identities=12%  Similarity=0.171  Sum_probs=50.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cc----cHHHHHhcCCCEE--EeCCCCc-----cccccCCCCCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-AR----NIEFVKSLGADEV--LDYKTPD-----GAALKSPSGRK  132 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~----~~~~~~~~g~~~v--~~~~~~~-----~~~~~~~~~~~  132 (240)
                      -.|+.|||+||++|+|.+.++=...+|++++..+- .+    ..++.++.|..+.  .|-++.+     .+.+++.. +.
T Consensus        36 v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~-G~  114 (300)
T KOG1201|consen   36 VSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEV-GD  114 (300)
T ss_pred             ccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhc-CC
Confidence            46899999999999999988888888998777773 22    3445555562222  2323322     12233222 37


Q ss_pred             ccEEEeCCC
Q 045248          133 YDAVIHCAT  141 (240)
Q Consensus       133 ~d~v~d~~g  141 (240)
                      +|++++.+|
T Consensus       115 V~ILVNNAG  123 (300)
T KOG1201|consen  115 VDILVNNAG  123 (300)
T ss_pred             ceEEEeccc
Confidence            999999998

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=96.41  E-value=0.012  Score=45.91  Aligned_cols=35  Identities=20%  Similarity=0.224  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      +++++||+||+|++|..+++.+...|++|+.++++
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~   36 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLN   36 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCC
Confidence            46889999999999999999999999999988864

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=96.41  E-value=0.04  Score=40.79  Aligned_cols=92  Identities=20%  Similarity=0.275  Sum_probs=58.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHHHH----HhcCCCEE--EeCCCCccccccCCCCCcccEE
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNIEFV----KSLGADEV--LDYKTPDGAALKSPSGRKYDAV  136 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~~~----~~~g~~~v--~~~~~~~~~~~~~~~~~~~d~v  136 (240)
                      .+++.++=+|+  |.|...++++..... +|++++++ ++.+..    +++|.+.+  +.-+.+  ..+...  ..+|.+
T Consensus        33 ~~g~~l~DIGa--GtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap--~~L~~~--~~~dai  106 (187)
T COG2242          33 RPGDRLWDIGA--GTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAP--EALPDL--PSPDAI  106 (187)
T ss_pred             CCCCEEEEeCC--CccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccch--HhhcCC--CCCCEE
Confidence            78897777773  356777888854444 99999975 554444    57886633  222222  122111  258888


Q ss_pred             EeCCCCC---CccccccCCCCCcEEEEeC
Q 045248          137 IHCATGI---PWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       137 ~d~~g~~---~~~~~~~~l~~~G~iv~~g  162 (240)
                      |=--|..   .++.++..|+++|++|.--
T Consensus       107 FIGGg~~i~~ile~~~~~l~~ggrlV~na  135 (187)
T COG2242         107 FIGGGGNIEEILEAAWERLKPGGRLVANA  135 (187)
T ss_pred             EECCCCCHHHHHHHHHHHcCcCCeEEEEe
Confidence            7554432   2888999999999988543

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=96.41  E-value=0.014  Score=45.90  Aligned_cols=77  Identities=17%  Similarity=0.173  Sum_probs=48.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHH----HHHhcCCCEE-E--eCCCCc--cccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIE----FVKSLGADEV-L--DYKTPD--GAALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~----~~~~~g~~~v-~--~~~~~~--~~~~~~--~~~~~~  133 (240)
                      .++++||+|++|++|..+++.+...|++|+.+.++ ++.+    .+++.+.... +  |..+.+  ...+..  ....++
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   85 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGSV   85 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            57899999999999999999999999999988864 3322    2234454322 2  212211  111111  112358


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.+.|.
T Consensus        86 d~vi~~ag~   94 (262)
T PRK13394         86 DILVSNAGI   94 (262)
T ss_pred             CEEEECCcc
Confidence            999999974

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=96.41  E-value=0.12  Score=37.57  Aligned_cols=98  Identities=19%  Similarity=0.186  Sum_probs=58.5

Q ss_pred             hhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEe
Q 045248           38 EGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLD  116 (240)
Q Consensus        38 ~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~  116 (240)
                      +-..+|++....+..+ +..++.    -.|++++|+|.+..+|.-+..++...|+.|....+. +..+..-         
T Consensus        12 ~~~~~PcTp~aii~lL-~~~~~~----l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~---------   77 (160)
T PF02882_consen   12 QPGFVPCTPLAIIELL-EYYGID----LEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEIT---------   77 (160)
T ss_dssp             TTSS--HHHHHHHHHH-HHTT-S----TTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHH---------
T ss_pred             CCCCcCCCHHHHHHHH-HhcCCC----CCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccccee---------
Confidence            3355677776677777 555543    489999999988889999999999999998886643 3332211         


Q ss_pred             CCCCccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248          117 YKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                                    +..|+|+-++|.+.+- --+.++++..++.+|..
T Consensus        78 --------------~~ADIVVsa~G~~~~i-~~~~ik~gavVIDvG~~  110 (160)
T PF02882_consen   78 --------------RRADIVVSAVGKPNLI-KADWIKPGAVVIDVGIN  110 (160)
T ss_dssp             --------------TTSSEEEE-SSSTT-B--GGGS-TTEEEEE--CE
T ss_pred             --------------eeccEEeeeecccccc-ccccccCCcEEEecCCc
Confidence                          2367777777765532 23467787777777753

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK08643 acetoin reductase; Validated

Probab=96.41  E-value=0.013  Score=46.06  Aligned_cols=76  Identities=20%  Similarity=0.135  Sum_probs=47.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCCE-EE--eCCCCc--cccccCC--CCCccc
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGADE-VL--DYKTPD--GAALKSP--SGRKYD  134 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~~-v~--~~~~~~--~~~~~~~--~~~~~d  134 (240)
                      +++++|+|++|++|..+++.+...|++|+.+.++ ++.+.+    ++.+... .+  |..+++  ...+...  ...++|
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   81 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDLN   81 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            4689999999999999999999999999999864 333222    2233321 12  222221  1111111  124699


Q ss_pred             EEEeCCCC
Q 045248          135 AVIHCATG  142 (240)
Q Consensus       135 ~v~d~~g~  142 (240)
                      +++.+.|.
T Consensus        82 ~vi~~ag~   89 (256)
T PRK08643         82 VVVNNAGV   89 (256)
T ss_pred             EEEECCCC
Confidence            99999973

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=96.41  E-value=0.027  Score=42.17  Aligned_cols=94  Identities=20%  Similarity=0.248  Sum_probs=57.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhC-CCEEEEEeCc-ccHHHH----HhcCCCEEEeCCCCccccccCCCCCcccEEEe
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLG-NTHVTASCGA-RNIEFV----KSLGADEVLDYKTPDGAALKSPSGRKYDAVIH  138 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~-g~~v~~~~~~-~~~~~~----~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d  138 (240)
                      +++.+||-+| + |.|..++.+++.. +++|++++.+ +..+.+    ++.+.+. +.....+......  ...||+|+-
T Consensus        44 ~~g~~VLDiG-c-GtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~--~~~fDlV~~  118 (187)
T PRK00107         44 PGGERVLDVG-S-GAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ--EEKFDVVTS  118 (187)
T ss_pred             CCCCeEEEEc-C-CCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC--CCCccEEEE
Confidence            5688999988 3 3455555566544 5699999965 444444    3455433 2222222111211  457999986


Q ss_pred             CCCC---CCccccccCCCCCcEEEEeCC
Q 045248          139 CATG---IPWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       139 ~~g~---~~~~~~~~~l~~~G~iv~~g~  163 (240)
                      ....   ..+..+.+.|+++|+++.+-.
T Consensus       119 ~~~~~~~~~l~~~~~~LkpGG~lv~~~~  146 (187)
T PRK00107        119 RAVASLSDLVELCLPLLKPGGRFLALKG  146 (187)
T ss_pred             ccccCHHHHHHHHHHhcCCCeEEEEEeC
Confidence            5432   226678889999999887743

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=96.41  E-value=0.012  Score=46.81  Aligned_cols=35  Identities=14%  Similarity=0.103  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .+++++|.|++|++|..+++.+...|++|+.+.++
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~   43 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRN   43 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999999999999999999999999988864

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=96.40  E-value=0.011  Score=46.35  Aligned_cols=77  Identities=19%  Similarity=0.109  Sum_probs=48.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcc---cHHHHHhcCCC-EEEeCCCCcc----ccccC--CCCCcccE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGAR---NIEFVKSLGAD-EVLDYKTPDG----AALKS--PSGRKYDA  135 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~---~~~~~~~~g~~-~v~~~~~~~~----~~~~~--~~~~~~d~  135 (240)
                      .+++++|+|++|++|.++++.+...|++|+.+.+.+   ..+.+++.+.. ..+..+-.+.    ..++.  ....++|+
T Consensus         9 ~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~D~   88 (253)
T PRK08993          9 EGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFGHIDI   88 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCE
Confidence            578999999999999999999999999998876432   22333444432 1222221111    11111  11246999


Q ss_pred             EEeCCCC
Q 045248          136 VIHCATG  142 (240)
Q Consensus       136 v~d~~g~  142 (240)
                      ++.++|.
T Consensus        89 li~~Ag~   95 (253)
T PRK08993         89 LVNNAGL   95 (253)
T ss_pred             EEECCCC
Confidence            9999984

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.40  E-value=0.012  Score=46.17  Aligned_cols=77  Identities=14%  Similarity=0.145  Sum_probs=48.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc--ccHHHHHhcCCCEE-EeCCCCc--cccccC--CCCCcccEEEe
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA--RNIEFVKSLGADEV-LDYKTPD--GAALKS--PSGRKYDAVIH  138 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~--~~~~~~~~~g~~~v-~~~~~~~--~~~~~~--~~~~~~d~v~d  138 (240)
                      .+++++|+|++|++|..+++.+...|++|+.+.+.  +..+.+++.+...+ .|..++.  ...+..  ....++|+++.
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~   85 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKEFGRVDVLVN   85 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            57899999999999999999999999998877643  33344443333211 1222222  111111  11246899999


Q ss_pred             CCCC
Q 045248          139 CATG  142 (240)
Q Consensus       139 ~~g~  142 (240)
                      +.|.
T Consensus        86 ~ag~   89 (255)
T PRK06463         86 NAGI   89 (255)
T ss_pred             CCCc
Confidence            9974

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.40  E-value=0.0065  Score=43.71  Aligned_cols=91  Identities=19%  Similarity=0.317  Sum_probs=60.6

Q ss_pred             EEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEEEeCCCCcc-----ccccC--CCCCcccEEEeCCCC
Q 045248           70 ILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDG-----AALKS--PSGRKYDAVIHCATG  142 (240)
Q Consensus        70 vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~-----~~~~~--~~~~~~d~v~d~~g~  142 (240)
                      |+|+| +|++|......++..|.+|..+.++.+.+..++.|..  +...+.+.     .....  .....+|++|=|+-.
T Consensus         1 I~I~G-~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa   77 (151)
T PF02558_consen    1 ILIIG-AGAIGSLYAARLAQAGHDVTLVSRSPRLEAIKEQGLT--ITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA   77 (151)
T ss_dssp             EEEES-TSHHHHHHHHHHHHTTCEEEEEESHHHHHHHHHHCEE--EEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG
T ss_pred             CEEEC-cCHHHHHHHHHHHHCCCceEEEEccccHHhhhheeEE--EEecccceecccccccCcchhccCCCcEEEEEecc
Confidence            68999 9999999888888899999999986677777777743  22222110     01111  235679999999965


Q ss_pred             CC----ccccccCCCCCcEEEEeCC
Q 045248          143 IP----WSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       143 ~~----~~~~~~~l~~~G~iv~~g~  163 (240)
                      ..    ++.+...+.++..++.+-.
T Consensus        78 ~~~~~~l~~l~~~~~~~t~iv~~qN  102 (151)
T PF02558_consen   78 YQLEQALQSLKPYLDPNTTIVSLQN  102 (151)
T ss_dssp             GGHHHHHHHHCTGEETTEEEEEESS
T ss_pred             cchHHHHHHHhhccCCCcEEEEEeC
Confidence            33    4445556667777877754

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK05876 short chain dehydrogenase; Provisional

Probab=96.39  E-value=0.011  Score=47.10  Aligned_cols=76  Identities=13%  Similarity=0.090  Sum_probs=48.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCC-EEE--eCCCCc-c-ccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGAD-EVL--DYKTPD-G-AALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~-~v~--~~~~~~-~-~~~~~--~~~~~~  133 (240)
                      .+++++|+|++|++|..+++.+...|++|+.+.++ ++.+.+    +..|.. ..+  |..+.+ . ..+..  ....++
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   84 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLGHV   84 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            57899999999999999999999999999888854 333322    233432 122  222211 1 11111  012468


Q ss_pred             cEEEeCCC
Q 045248          134 DAVIHCAT  141 (240)
Q Consensus       134 d~v~d~~g  141 (240)
                      |+++.+.|
T Consensus        85 d~li~nAg   92 (275)
T PRK05876         85 DVVFSNAG   92 (275)
T ss_pred             CEEEECCC
Confidence            99999998

>PRK06914 short chain dehydrogenase; Provisional

Probab=96.39  E-value=0.014  Score=46.57  Aligned_cols=35  Identities=26%  Similarity=0.191  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .++++||+||+|++|..++..+...|++|++++++
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~   36 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRN   36 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCC
Confidence            35789999999999999999888899999999864

>PRK08862 short chain dehydrogenase; Provisional

Probab=96.38  E-value=0.022  Score=44.08  Aligned_cols=76  Identities=12%  Similarity=0.033  Sum_probs=49.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH----HHhcCCCE-EE--eCCCCc-c-cccc---CCCCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF----VKSLGADE-VL--DYKTPD-G-AALK---SPSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~----~~~~g~~~-v~--~~~~~~-~-~~~~---~~~~~~  132 (240)
                      .+++++|.|+++++|.+.+.-+...|++|+.+.++ ++.+.    +++.+... .+  |..+.. . ..+.   ...+..
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   83 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNRA   83 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            57899999999999999998888899999988864 44332    23445332 22  222221 1 1111   112236


Q ss_pred             ccEEEeCCC
Q 045248          133 YDAVIHCAT  141 (240)
Q Consensus       133 ~d~v~d~~g  141 (240)
                      +|+++.+.|
T Consensus        84 iD~li~nag   92 (227)
T PRK08862         84 PDVLVNNWT   92 (227)
T ss_pred             CCEEEECCc
Confidence            999999997

>PRK06125 short chain dehydrogenase; Provisional

Probab=96.38  E-value=0.015  Score=45.74  Aligned_cols=75  Identities=23%  Similarity=0.345  Sum_probs=48.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----Hh-cCCC-EEE--eCCCCc-c-ccccCCCCCccc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KS-LGAD-EVL--DYKTPD-G-AALKSPSGRKYD  134 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~-~g~~-~v~--~~~~~~-~-~~~~~~~~~~~d  134 (240)
                      .+++++|.|++|++|..+++.+...|++|+.+.++ ++.+.+    ++ .+.. ..+  |..+.. . ..++.  -.++|
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~--~g~id   83 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAE--AGDID   83 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHH--hCCCC
Confidence            57899999999999999999888899999999864 443332    22 2321 222  222211 1 11121  14699


Q ss_pred             EEEeCCCC
Q 045248          135 AVIHCATG  142 (240)
Q Consensus       135 ~v~d~~g~  142 (240)
                      +++.+.|.
T Consensus        84 ~lv~~ag~   91 (259)
T PRK06125         84 ILVNNAGA   91 (259)
T ss_pred             EEEECCCC
Confidence            99999873

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.37  E-value=0.097  Score=38.46  Aligned_cols=56  Identities=18%  Similarity=0.091  Sum_probs=40.6

Q ss_pred             hhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCch-HHHHHHHHHHhCCCEEEEEeCc
Q 045248           39 GSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGG-VGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        39 aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~-vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ....|+...++...+.+...-     -.+++++|+| +|. +|..++..++..|++|..+.+.
T Consensus        21 ~~~~p~~~~a~v~l~~~~~~~-----l~gk~vlViG-~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          21 PGFIPCTPAGILELLKRYGID-----LAGKKVVVVG-RSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCccCChHHHHHHHHHHcCCC-----CCCCEEEEEC-CcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            344566655666666444322     3899999999 676 5999999999999987777754

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=96.37  E-value=0.0065  Score=46.64  Aligned_cols=94  Identities=18%  Similarity=0.172  Sum_probs=59.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEe-CcccHHHHHhcCCCE--EEeCCCCccccccCCCCCcccEEEe----
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASC-GARNIEFVKSLGADE--VLDYKTPDGAALKSPSGRKYDAVIH----  138 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~-~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~~~~~~d~v~d----  138 (240)
                      +|.+||=+|.+|  |+ +.+-+...|++|++++ +++..+.++.-....  -++|.......+.. .++.||+|+.    
T Consensus        59 ~g~~vLDvGCGg--G~-Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~-~~~~FDvV~cmEVl  134 (243)
T COG2227          59 PGLRVLDVGCGG--GI-LSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLAS-AGGQFDVVTCMEVL  134 (243)
T ss_pred             CCCeEEEecCCc--cH-hhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHh-cCCCccEEEEhhHH
Confidence            788999888444  34 4445556789999999 456667775322211  14455433222222 2278999964    


Q ss_pred             -CCCCCC--ccccccCCCCCcEEEEeCC
Q 045248          139 -CATGIP--WSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       139 -~~g~~~--~~~~~~~l~~~G~iv~~g~  163 (240)
                       -+..+.  +..+.++++|+|.++....
T Consensus       135 EHv~dp~~~~~~c~~lvkP~G~lf~STi  162 (243)
T COG2227         135 EHVPDPESFLRACAKLVKPGGILFLSTI  162 (243)
T ss_pred             HccCCHHHHHHHHHHHcCCCcEEEEecc
Confidence             444432  6778999999999887653

>PRK06482 short chain dehydrogenase; Provisional

Probab=96.36  E-value=0.014  Score=46.46  Aligned_cols=75  Identities=23%  Similarity=0.238  Sum_probs=47.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHh-cCCC-EEE--eCCCCc--cccccC--CCCCcccEEEe
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKS-LGAD-EVL--DYKTPD--GAALKS--PSGRKYDAVIH  138 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~-~g~~-~v~--~~~~~~--~~~~~~--~~~~~~d~v~d  138 (240)
                      +++||+||+|++|..+++.+...|++|+++.++ ++.+.+++ .+.. .++  |..+..  ...+..  ....++|++|.
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~   82 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVVVS   82 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            579999999999999999888899999999875 45554433 2321 222  222221  111111  11246899999


Q ss_pred             CCCC
Q 045248          139 CATG  142 (240)
Q Consensus       139 ~~g~  142 (240)
                      ++|.
T Consensus        83 ~ag~   86 (276)
T PRK06482         83 NAGY   86 (276)
T ss_pred             CCCC
Confidence            9984

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.34  E-value=0.022  Score=44.91  Aligned_cols=77  Identities=13%  Similarity=0.064  Sum_probs=47.7

Q ss_pred             CCCeEEEEcCC--chHHHHHHHHHHhCCCEEEEEeCcc-cH---HHH-HhcCCCEEEeCCCCcc----ccccCC--CCCc
Q 045248           66 QQKNILVTAAS--GGVGHYAVQLAKLGNTHVTASCGAR-NI---EFV-KSLGADEVLDYKTPDG----AALKSP--SGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~--g~vG~~~~~~a~~~g~~v~~~~~~~-~~---~~~-~~~g~~~v~~~~~~~~----~~~~~~--~~~~  132 (240)
                      .+++++|+||+  +++|.++++.+...|++|+.+.+.+ ..   +.+ ++++....+..+-.+.    ..++..  ..++
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   88 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWGR   88 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcCC
Confidence            67899999987  4999999998889999998887642 22   222 3344333332221111    111111  1246


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.++|.
T Consensus        89 ld~lv~nAg~   98 (258)
T PRK07533         89 LDFLLHSIAF   98 (258)
T ss_pred             CCEEEEcCcc
Confidence            9999999873

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=96.31  E-value=0.013  Score=48.18  Aligned_cols=37  Identities=19%  Similarity=0.201  Sum_probs=32.7

Q ss_pred             CCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           64 SGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        64 ~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      +.++++|||+||+|.+|..+++.+...|.+|+++.+.
T Consensus         3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~   39 (340)
T PLN02653          3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRR   39 (340)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecc
Confidence            3467899999999999999999999999999998753

>PRK06179 short chain dehydrogenase; Provisional

Probab=96.31  E-value=0.0064  Score=48.16  Aligned_cols=75  Identities=21%  Similarity=0.231  Sum_probs=47.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCE-EEeCCCCc--cccccC--CCCCcccEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADE-VLDYKTPD--GAALKS--PSGRKYDAVIHC  139 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~-v~~~~~~~--~~~~~~--~~~~~~d~v~d~  139 (240)
                      .+++++|+||+|++|..+++.+...|++|++++++ ++.+..  .+... ..|..+..  ...++.  ...+++|++|.+
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~~   80 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAPI--PGVELLELDVTDDASVQAAVDEVIARAGRIDVLVNN   80 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhcccc--CCCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence            45789999999999999999888899999999875 332211  12221 12333222  111111  112468999999


Q ss_pred             CCC
Q 045248          140 ATG  142 (240)
Q Consensus       140 ~g~  142 (240)
                      .|.
T Consensus        81 ag~   83 (270)
T PRK06179         81 AGV   83 (270)
T ss_pred             CCC
Confidence            984

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=96.30  E-value=0.082  Score=42.29  Aligned_cols=92  Identities=16%  Similarity=0.088  Sum_probs=56.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHHHH-HhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNIEFV-KSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~~~-~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      .+++++|+| +|++|.+++..+...|+ +|+++.++ ++.+.+ ++++....+.. ..+.    ...-..+|+|++++..
T Consensus       122 ~~k~vlVlG-aGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~-~~~~----~~~~~~~DivInaTp~  195 (278)
T PRK00258        122 KGKRILILG-AGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAEL-DLEL----QEELADFDLIINATSA  195 (278)
T ss_pred             CCCEEEEEc-CcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceee-cccc----hhccccCCEEEECCcC
Confidence            678999999 79999999999999995 88888875 554444 34432110111 0000    0111468999999974


Q ss_pred             CCc------cccccCCCCCcEEEEeCC
Q 045248          143 IPW------STFEPNLGTNGKVIDITP  163 (240)
Q Consensus       143 ~~~------~~~~~~l~~~G~iv~~g~  163 (240)
                      ...      ......++++..++.+-.
T Consensus       196 g~~~~~~~~~~~~~~l~~~~~v~DivY  222 (278)
T PRK00258        196 GMSGELPLPPLPLSLLRPGTIVYDMIY  222 (278)
T ss_pred             CCCCCCCCCCCCHHHcCCCCEEEEeec
Confidence            221      122345677766666643

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=96.29  E-value=0.019  Score=45.74  Aligned_cols=77  Identities=16%  Similarity=0.148  Sum_probs=55.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-----HhcCC---CEEEeCCCCc--c-ccccCCCCCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-----KSLGA---DEVLDYKTPD--G-AALKSPSGRK  132 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-----~~~g~---~~v~~~~~~~--~-~~~~~~~~~~  132 (240)
                      +-|++.+|.||+.|+|.+.+.=+..+|.+|+.+.|+ ++++..     ++.++   ..++|+.+.+  . ...+.+.+-.
T Consensus        47 ~~g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~  126 (312)
T KOG1014|consen   47 KLGSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLD  126 (312)
T ss_pred             hcCCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCc
Confidence            457899999999999988654444499999999986 676544     33442   2446777665  2 2345566677


Q ss_pred             ccEEEeCCC
Q 045248          133 YDAVIHCAT  141 (240)
Q Consensus       133 ~d~v~d~~g  141 (240)
                      +-+.++++|
T Consensus       127 VgILVNNvG  135 (312)
T KOG1014|consen  127 VGILVNNVG  135 (312)
T ss_pred             eEEEEeccc
Confidence            888899998

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=96.29  E-value=0.021  Score=47.16  Aligned_cols=35  Identities=23%  Similarity=0.116  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .+++|||+||+|.+|..+++.+...|.+|+++.+.
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~   37 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLD   37 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCC
Confidence            56899999999999999999999999999988854

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK08278 short chain dehydrogenase; Provisional

Probab=96.28  E-value=0.016  Score=46.03  Aligned_cols=35  Identities=20%  Similarity=0.293  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .+++++|+||+|++|..+++.+...|++|+.+.++
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~   39 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGANIVIAAKT   39 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecc
Confidence            56799999999999999999888999999998864

>PRK05884 short chain dehydrogenase; Provisional

Probab=96.28  E-value=0.012  Score=45.42  Aligned_cols=72  Identities=19%  Similarity=0.273  Sum_probs=46.1

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCCEE-EeCCCCc--cccccCCCCCcccEEEeCCC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGADEV-LDYKTPD--GAALKSPSGRKYDAVIHCAT  141 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~~v-~~~~~~~--~~~~~~~~~~~~d~v~d~~g  141 (240)
                      +++|.||+|++|..+++.+...|++|+.+.++ ++.+.+ ++.+...+ .|..+..  ...++... .++|+++.+.|
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~-~~id~lv~~ag   78 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFP-HHLDTIVNVPA   78 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHh-hcCcEEEECCC
Confidence            58999999999999999998899999998865 444433 34443322 1222221  11111111 25899999876

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=96.27  E-value=0.018  Score=45.14  Aligned_cols=76  Identities=18%  Similarity=0.186  Sum_probs=47.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCC-CEEE--eCCCCccccccCCCCCcccEEEeCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGA-DEVL--DYKTPDGAALKSPSGRKYDAVIHCAT  141 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~-~~v~--~~~~~~~~~~~~~~~~~~d~v~d~~g  141 (240)
                      ++++|||+||+|.+|..+++.+...|++|+++.+. ++.+.....+. ..++  |..+......... +.++|+||.+.|
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~-~~~~d~vi~~~g   94 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAI-GDDSDAVICATG   94 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHh-hcCCCEEEECCC
Confidence            56899999999999999998888889999988865 44332211111 1222  3222111111111 236999998887


Q ss_pred             C
Q 045248          142 G  142 (240)
Q Consensus       142 ~  142 (240)
                      .
T Consensus        95 ~   95 (251)
T PLN00141         95 F   95 (251)
T ss_pred             C
Confidence            4

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=96.26  E-value=0.015  Score=48.21  Aligned_cols=94  Identities=13%  Similarity=0.146  Sum_probs=64.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhC--CCEEEEEe-C-c-c-cHHHHHhcCCCEEEeCCCCcccc-----------------
Q 045248           68 KNILVTAASGGVGHYAVQLAKLG--NTHVTASC-G-A-R-NIEFVKSLGADEVLDYKTPDGAA-----------------  124 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~--g~~v~~~~-~-~-~-~~~~~~~~g~~~v~~~~~~~~~~-----------------  124 (240)
                      ++|.|.|++|++|...++..+.+  .++|++++ . + + -.+.++++++..+.-.++.....                 
T Consensus         2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~   81 (385)
T PRK05447          2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGEE   81 (385)
T ss_pred             ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEEChh
Confidence            57999999999999999988765  46888888 3 2 2 34566788887665443321110                 


Q ss_pred             --ccCCCCCcccEEEeCCCCC-CccccccCCCCCcEEEEe
Q 045248          125 --LKSPSGRKYDAVIHCATGI-PWSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       125 --~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~  161 (240)
                        .+......+|+|+.++++. .+...+.+++.|=++.+.
T Consensus        82 ~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLA  121 (385)
T PRK05447         82 GLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIALA  121 (385)
T ss_pred             HHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEe
Confidence              0112234699999999874 477788888877666654

>PRK06484 short chain dehydrogenase; Validated

Probab=96.26  E-value=0.017  Score=50.51  Aligned_cols=78  Identities=12%  Similarity=0.156  Sum_probs=51.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH-hcCCCE-EE--eCCCCc--cccccCC--CCCcccE
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK-SLGADE-VL--DYKTPD--GAALKSP--SGRKYDA  135 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~-~~g~~~-v~--~~~~~~--~~~~~~~--~~~~~d~  135 (240)
                      ..++++||+||++++|..+++.+...|++|+.+.++ ++.+.+. +++... .+  |..+.+  ...++..  ....+|+
T Consensus       267 ~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~  346 (520)
T PRK06484        267 ESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARWGRLDV  346 (520)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            357899999999999999999999999999999875 5554443 444322 12  322222  1111111  1246999


Q ss_pred             EEeCCCC
Q 045248          136 VIHCATG  142 (240)
Q Consensus       136 v~d~~g~  142 (240)
                      +|.++|.
T Consensus       347 li~nAg~  353 (520)
T PRK06484        347 LVNNAGI  353 (520)
T ss_pred             EEECCCC
Confidence            9999883

>PRK08263 short chain dehydrogenase; Provisional

Probab=96.26  E-value=0.015  Score=46.23  Aligned_cols=76  Identities=22%  Similarity=0.185  Sum_probs=47.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH-hcCCC-EEE--eCCCCc-c-ccccC--CCCCcccEEE
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK-SLGAD-EVL--DYKTPD-G-AALKS--PSGRKYDAVI  137 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~-~~g~~-~v~--~~~~~~-~-~~~~~--~~~~~~d~v~  137 (240)
                      ++++||+|++|++|..+++.+...|++|+.+.++ ++.+.+. .++.. ..+  |..+.. . ..+..  ..-.++|+++
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi   82 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRLDIVV   82 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            4689999999999999998888889999998875 4444433 33321 222  222211 1 11111  0124689999


Q ss_pred             eCCCC
Q 045248          138 HCATG  142 (240)
Q Consensus       138 d~~g~  142 (240)
                      .+.|.
T Consensus        83 ~~ag~   87 (275)
T PRK08263         83 NNAGY   87 (275)
T ss_pred             ECCCC
Confidence            99984

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.25  E-value=0.0034  Score=53.77  Aligned_cols=87  Identities=15%  Similarity=0.024  Sum_probs=54.1

Q ss_pred             CCCCeEE----EEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCC-EEEeCCCCc-cccccCCCCCcccEEE
Q 045248           65 GQQKNIL----VTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGAD-EVLDYKTPD-GAALKSPSGRKYDAVI  137 (240)
Q Consensus        65 ~~g~~vl----V~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~-~v~~~~~~~-~~~~~~~~~~~~d~v~  137 (240)
                      ++|+++|    |+||+|++|.+++|+++..|++|+++.++ .+....+..+.. .+++.+... ...+...         
T Consensus        32 ~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~---------  102 (450)
T PRK08261         32 RPGQPLLDGPVLVGGAGRLAEALAALLAGLGYDVVANNDGGLTWAAGWGDRFGALVFDATGITDPADLKAL---------  102 (450)
T ss_pred             CCCCCCCCCceEEccCchhHHHHHHHHhhCCCeeeecCccccccccCcCCcccEEEEECCCCCCHHHHHHH---------
Confidence            7888888    88889999999999999999999998754 322222222322 233322211 0000000         


Q ss_pred             eCCCCCCccccccCCCCCcEEEEeCCC
Q 045248          138 HCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       138 d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                          ...+...++.+.++|+++.++..
T Consensus       103 ----~~~~~~~l~~l~~~griv~i~s~  125 (450)
T PRK08261        103 ----YEFFHPVLRSLAPCGRVVVLGRP  125 (450)
T ss_pred             ----HHHHHHHHHhccCCCEEEEEccc
Confidence                01244567788889999988753

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.25  E-value=0.077  Score=40.62  Aligned_cols=98  Identities=20%  Similarity=0.180  Sum_probs=59.8

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC--CEEEEEeCc-ccHHHH----HhcCCCEEEeCCCCccccccC
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN--THVTASCGA-RNIEFV----KSLGADEVLDYKTPDGAALKS  127 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g--~~v~~~~~~-~~~~~~----~~~g~~~v~~~~~~~~~~~~~  127 (240)
                      +...+     +++++||-+|  +|.|..+..+++..+  .+|++++.+ +-.+.+    ++.|...+ .....+... ..
T Consensus        70 ~~l~~-----~~g~~VLdIG--~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v-~~~~gd~~~-~~  140 (212)
T PRK13942         70 ELLDL-----KEGMKVLEIG--TGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNV-EVIVGDGTL-GY  140 (212)
T ss_pred             HHcCC-----CCcCEEEEEC--CcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCe-EEEECCccc-CC
Confidence            55666     7999999998  345667777777665  489999964 444444    34454321 111111000 01


Q ss_pred             CCCCcccEEEeCCCC-CCccccccCCCCCcEEEEe
Q 045248          128 PSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       128 ~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~  161 (240)
                      .....||.|+-+... .......+.|+++|+++..
T Consensus       141 ~~~~~fD~I~~~~~~~~~~~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        141 EENAPYDRIYVTAAGPDIPKPLIEQLKDGGIMVIP  175 (212)
T ss_pred             CcCCCcCEEEECCCcccchHHHHHhhCCCcEEEEE
Confidence            123579999755443 3356778899999998764

>PRK06198 short chain dehydrogenase; Provisional

Probab=96.25  E-value=0.012  Score=46.36  Aligned_cols=77  Identities=19%  Similarity=0.214  Sum_probs=49.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCE-EEEEeCc-ccHH----HHHhcCCCEE-E--eCCCCc--cccccCC--CCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTH-VTASCGA-RNIE----FVKSLGADEV-L--DYKTPD--GAALKSP--SGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~-v~~~~~~-~~~~----~~~~~g~~~v-~--~~~~~~--~~~~~~~--~~~~  132 (240)
                      .+++++|+|++|++|..+++.+...|++ |+.+.++ ++.+    .+++.+.... +  |..+.+  ...++..  .-.+
T Consensus         5 ~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   84 (260)
T PRK06198          5 DGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAFGR   84 (260)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5688999999999999999999999997 8888864 3332    2334443321 2  333222  1111111  1136


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|.++.+.|.
T Consensus        85 id~li~~ag~   94 (260)
T PRK06198         85 LDALVNAAGL   94 (260)
T ss_pred             CCEEEECCCc
Confidence            9999999984

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.25  E-value=0.02  Score=44.37  Aligned_cols=77  Identities=21%  Similarity=0.206  Sum_probs=48.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH----HHhcCCCEEE---eCCCCc--cccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF----VKSLGADEVL---DYKTPD--GAALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~----~~~~g~~~v~---~~~~~~--~~~~~~--~~~~~~  133 (240)
                      +++++||+|++|++|..+++.+...|.+|+.+.++ ++.+.    ++..+....+   |..+..  ...+..  ..-.++
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGAL   83 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            56789999999999999999988999999888875 44322    2334433222   222221  111111  112458


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |.++.++|.
T Consensus        84 d~vi~~ag~   92 (246)
T PRK05653         84 DILVNNAGI   92 (246)
T ss_pred             CEEEECCCc
Confidence            999999974

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=96.23  E-value=0.16  Score=39.87  Aligned_cols=92  Identities=15%  Similarity=0.087  Sum_probs=56.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHhcCC-CEEEeCCCCccccccCCCCCcccEEEeCCC-
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGA-DEVLDYKTPDGAALKSPSGRKYDAVIHCAT-  141 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g-  141 (240)
                      .++.+||-+| +|. |..+..+++ .|.+|++++. ++..+.+++... ...+..+..   .. ......||+|+.... 
T Consensus        41 ~~~~~vLDiG-cG~-G~~~~~l~~-~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~---~~-~~~~~~fD~V~s~~~l  113 (251)
T PRK10258         41 RKFTHVLDAG-CGP-GWMSRYWRE-RGSQVTALDLSPPMLAQARQKDAADHYLAGDIE---SL-PLATATFDLAWSNLAV  113 (251)
T ss_pred             cCCCeEEEee-CCC-CHHHHHHHH-cCCeEEEEECCHHHHHHHHhhCCCCCEEEcCcc---cC-cCCCCcEEEEEECchh
Confidence            4678899998 554 655555544 6789999995 466677765432 122211111   11 112346999986553 


Q ss_pred             ----C--CCccccccCCCCCcEEEEeCC
Q 045248          142 ----G--IPWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       142 ----~--~~~~~~~~~l~~~G~iv~~g~  163 (240)
                          .  ..+..+.+.|+++|.++....
T Consensus       114 ~~~~d~~~~l~~~~~~Lk~gG~l~~~~~  141 (251)
T PRK10258        114 QWCGNLSTALRELYRVVRPGGVVAFTTL  141 (251)
T ss_pred             hhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence                1  126677889999999887654

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.23  E-value=0.01  Score=46.61  Aligned_cols=76  Identities=16%  Similarity=0.176  Sum_probs=47.6

Q ss_pred             CCCeEEEEcCC--chHHHHHHHHHHhCCCEEEEEeCccc-HHHHHhcCCC--EEE--eCCCCc--cccccCC--CCCccc
Q 045248           66 QQKNILVTAAS--GGVGHYAVQLAKLGNTHVTASCGARN-IEFVKSLGAD--EVL--DYKTPD--GAALKSP--SGRKYD  134 (240)
Q Consensus        66 ~g~~vlV~G~~--g~vG~~~~~~a~~~g~~v~~~~~~~~-~~~~~~~g~~--~v~--~~~~~~--~~~~~~~--~~~~~d  134 (240)
                      .+++++|+||+  +++|.++++.+...|++|+.+.++++ .+.++++...  ..+  |-.+..  ...++..  .-..+|
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD   85 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAFATIKERVGKID   85 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHhCCCC
Confidence            67899999988  79999999988889999998886533 2333333221  122  222211  1111111  124699


Q ss_pred             EEEeCCC
Q 045248          135 AVIHCAT  141 (240)
Q Consensus       135 ~v~d~~g  141 (240)
                      +++.++|
T Consensus        86 ~lv~nAg   92 (252)
T PRK06079         86 GIVHAIA   92 (252)
T ss_pred             EEEEccc
Confidence            9999987

>PRK07775 short chain dehydrogenase; Provisional

Probab=96.22  E-value=0.022  Score=45.32  Aligned_cols=35  Identities=20%  Similarity=0.222  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      +.++++|+||+|++|..+++.+...|++|++++++
T Consensus         9 ~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~   43 (274)
T PRK07775          9 DRRPALVAGASSGIGAATAIELAAAGFPVALGARR   43 (274)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            55789999999999999999888899999888864

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=96.22  E-value=0.022  Score=46.43  Aligned_cols=36  Identities=25%  Similarity=0.298  Sum_probs=31.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ..++++||+||+|.+|..+++.+...|++|+++.++
T Consensus         3 ~~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~   38 (325)
T PLN02989          3 DGGKVVCVTGASGYIASWIVKLLLFRGYTINATVRD   38 (325)
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcC
Confidence            467899999999999999999999999999887754

>PRK08226 short chain dehydrogenase; Provisional

Probab=96.20  E-value=0.016  Score=45.74  Aligned_cols=35  Identities=17%  Similarity=0.133  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .+++++|+|++|++|..+++.+...|++|+.+.++
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~   39 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGANLILLDIS   39 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCC
Confidence            57899999999999999999999899999988875

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.20  E-value=0.094  Score=42.17  Aligned_cols=94  Identities=21%  Similarity=0.151  Sum_probs=65.7

Q ss_pred             hhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEe-CcccHHHHHhcCCCEEEeCCC
Q 045248           41 GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASC-GARNIEFVKSLGADEVLDYKT  119 (240)
Q Consensus        41 ~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~-~~~~~~~~~~~g~~~v~~~~~  119 (240)
                      ..||+....+..+ +..++.    -.|++|+|+|.++.+|.-.+.++...|+.|++.. ++...+.+             
T Consensus       137 ~~PcTp~ai~~ll-~~~~i~----~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l~e~-------------  198 (296)
T PRK14188        137 LVPCTPLGCMMLL-RRVHGD----LSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDLPAV-------------  198 (296)
T ss_pred             CcCCCHHHHHHHH-HHhCCC----CCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCHHHH-------------
Confidence            4577766666666 544443    3899999999999999999999999999998885 33322111             


Q ss_pred             CccccccCCCCCcccEEEeCCCCCC-ccccccCCCCCcEEEEeCCC
Q 045248          120 PDGAALKSPSGRKYDAVIHCATGIP-WSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       120 ~~~~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~g~~  164 (240)
                           .     ...|+|+-++|.+. +...  .+++|..++.+|..
T Consensus       199 -----~-----~~ADIVIsavg~~~~v~~~--~lk~GavVIDvGin  232 (296)
T PRK14188        199 -----C-----RRADILVAAVGRPEMVKGD--WIKPGATVIDVGIN  232 (296)
T ss_pred             -----H-----hcCCEEEEecCChhhcchh--eecCCCEEEEcCCc
Confidence                 0     23678888888654 3332  37888888888853

>PRK07074 short chain dehydrogenase; Provisional

Probab=96.19  E-value=0.017  Score=45.38  Aligned_cols=76  Identities=22%  Similarity=0.216  Sum_probs=47.1

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCC--CEEE--eCCCCc-c-ccccC--CCCCcccEE
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGA--DEVL--DYKTPD-G-AALKS--PSGRKYDAV  136 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~--~~v~--~~~~~~-~-~~~~~--~~~~~~d~v  136 (240)
                      +++++|+|++|++|..++..+...|++|+.+.++ ++.+.+ +++..  ...+  |..+.. . ..+..  ..-.++|++
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v   81 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGPVDVL   81 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            4689999999999999998888899999998864 443333 33321  1222  222221 1 11111  011368999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      +.+.|.
T Consensus        82 i~~ag~   87 (257)
T PRK07074         82 VANAGA   87 (257)
T ss_pred             EECCCC
Confidence            999984

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=96.19  E-value=0.015  Score=52.47  Aligned_cols=35  Identities=20%  Similarity=0.293  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .++++||+|++|++|..+++.+...|++|+.++++
T Consensus       413 ~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~  447 (676)
T TIGR02632       413 ARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLN  447 (676)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCC
Confidence            57899999999999999999888899999999864

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.18  E-value=0.03  Score=44.63  Aligned_cols=77  Identities=17%  Similarity=0.193  Sum_probs=48.8

Q ss_pred             CCCeEEEEcCC--chHHHHHHHHHHhCCCEEEEEeCcc----cHHHH-HhcCCCEEE--eCCCCc--cccccC--CCCCc
Q 045248           66 QQKNILVTAAS--GGVGHYAVQLAKLGNTHVTASCGAR----NIEFV-KSLGADEVL--DYKTPD--GAALKS--PSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~--g~vG~~~~~~a~~~g~~v~~~~~~~----~~~~~-~~~g~~~v~--~~~~~~--~~~~~~--~~~~~  132 (240)
                      .+++++|+||+  +++|.++++.+...|++|+.+.+++    +.+.+ ++++....+  |-.+.+  ...++.  ....+
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~~~g~   83 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKKDLGK   83 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            57899999986  7999999999889999999887642    22222 344533233  222222  111111  11246


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.+.|.
T Consensus        84 iDilVnnAG~   93 (274)
T PRK08415         84 IDFIVHSVAF   93 (274)
T ss_pred             CCEEEECCcc
Confidence            9999999983

>PRK07023 short chain dehydrogenase; Provisional

Probab=96.18  E-value=0.026  Score=43.91  Aligned_cols=32  Identities=19%  Similarity=0.156  Sum_probs=29.1

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ++||.|++|++|..+++.+...|++|+.++++
T Consensus         3 ~vlItGasggiG~~ia~~l~~~G~~v~~~~r~   34 (243)
T PRK07023          3 RAIVTGHSRGLGAALAEQLLQPGIAVLGVARS   34 (243)
T ss_pred             eEEEecCCcchHHHHHHHHHhCCCEEEEEecC
Confidence            68999999999999999888899999998865

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=96.17  E-value=0.021  Score=44.77  Aligned_cols=35  Identities=23%  Similarity=0.155  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .++++||+|++|++|..+++.+...|++|+.+.+.
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~   37 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGAKVVIADLN   37 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            46899999999999999999888899999999864

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.17  E-value=0.021  Score=43.27  Aligned_cols=66  Identities=17%  Similarity=0.143  Sum_probs=45.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCCEEEeCCCCccccccCCCCCcccEEEeCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCAT  141 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g  141 (240)
                      .|++++|+| .|.+|..+++.+...|++|++++++ ++.+.+ +.+|+. .++..+        .....+|+++-|..
T Consensus        27 ~gk~v~I~G-~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~-~v~~~~--------l~~~~~Dv~vp~A~   94 (200)
T cd01075          27 EGKTVAVQG-LGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGAT-VVAPEE--------IYSVDADVFAPCAL   94 (200)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCE-EEcchh--------hccccCCEEEeccc
Confidence            788999999 8999999999999999999988764 454444 444643 333211        11124777775554

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=96.17  E-value=0.033  Score=42.64  Aligned_cols=95  Identities=18%  Similarity=0.146  Sum_probs=63.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCC--CEEEEEeCc-ccHHHH----HhcCCCEEEeCCC-Cc-cccccCCCCCcccE
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGN--THVTASCGA-RNIEFV----KSLGADEVLDYKT-PD-GAALKSPSGRKYDA  135 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g--~~v~~~~~~-~~~~~~----~~~g~~~v~~~~~-~~-~~~~~~~~~~~~d~  135 (240)
                      .+.+++|=+|  ..+|..++.+|....  .+++++..+ ++.+.+    ++.|.+..+.--. .+ ...+.....+.||+
T Consensus        58 ~~~k~iLEiG--T~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDl  135 (219)
T COG4122          58 SGPKRILEIG--TAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDL  135 (219)
T ss_pred             cCCceEEEee--cccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccE
Confidence            5778899888  567888999999777  388888865 666655    4677655322111 12 22222234578999


Q ss_pred             EE-eCCCCCC---ccccccCCCCCcEEEEe
Q 045248          136 VI-HCATGIP---WSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       136 v~-d~~g~~~---~~~~~~~l~~~G~iv~~  161 (240)
                      || |+--..+   ++.++++|++||.++.=
T Consensus       136 iFIDadK~~yp~~le~~~~lLr~GGliv~D  165 (219)
T COG4122         136 VFIDADKADYPEYLERALPLLRPGGLIVAD  165 (219)
T ss_pred             EEEeCChhhCHHHHHHHHHHhCCCcEEEEe
Confidence            95 4443333   88999999999998743

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=96.17  E-value=0.016  Score=45.51  Aligned_cols=77  Identities=16%  Similarity=0.194  Sum_probs=49.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHH----HhcCCC-EEEe--CCCCc--cccccC--CCCCccc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFV----KSLGAD-EVLD--YKTPD--GAALKS--PSGRKYD  134 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~----~~~g~~-~v~~--~~~~~--~~~~~~--~~~~~~d  134 (240)
                      .++++||+||+|++|..+++.+...|++|+.+.++++.+.+    .+.+.. ..+.  ..+..  ...+..  ....++|
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~id   93 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFGKID   93 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence            67899999999999999999999999999988865433322    233432 2222  22211  111111  1124689


Q ss_pred             EEEeCCCC
Q 045248          135 AVIHCATG  142 (240)
Q Consensus       135 ~v~d~~g~  142 (240)
                      +++.+.|.
T Consensus        94 ~li~~ag~  101 (258)
T PRK06935         94 ILVNNAGT  101 (258)
T ss_pred             EEEECCCC
Confidence            99999873

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=96.16  E-value=0.028  Score=45.83  Aligned_cols=36  Identities=33%  Similarity=0.368  Sum_probs=31.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ..+++|||+||+|.+|..+++.+...|++|+++.++
T Consensus         3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~   38 (322)
T PLN02986          3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRD   38 (322)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            357899999999999999999888899999988864

>PRK06114 short chain dehydrogenase; Provisional

Probab=96.16  E-value=0.028  Score=44.13  Aligned_cols=35  Identities=17%  Similarity=0.090  Sum_probs=31.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .+++++|+|+++++|..+++.+...|++|+.+.++
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~   41 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLR   41 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999999999999999999999999988864

>PRK12743 oxidoreductase; Provisional

Probab=96.16  E-value=0.025  Score=44.40  Aligned_cols=76  Identities=22%  Similarity=0.277  Sum_probs=47.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-c-ccH----HHHHhcCCC-EEE--eCCCCc-c-ccccC--CCCCcc
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-A-RNI----EFVKSLGAD-EVL--DYKTPD-G-AALKS--PSGRKY  133 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~-~~~----~~~~~~g~~-~v~--~~~~~~-~-~~~~~--~~~~~~  133 (240)
                      ++++||.||+|++|..+++.+...|++|+.+.+ + ++.    +.++..|.. ..+  |..+.. . ..++.  ..-.++
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   81 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGRI   81 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            468999999999999999999999999988763 3 322    223345543 222  222211 1 11111  111368


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.+.|.
T Consensus        82 d~li~~ag~   90 (256)
T PRK12743         82 DVLVNNAGA   90 (256)
T ss_pred             CEEEECCCC
Confidence            999999873

>PRK06720 hypothetical protein; Provisional

Probab=96.15  E-value=0.038  Score=40.71  Aligned_cols=77  Identities=16%  Similarity=0.173  Sum_probs=48.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHH----HHHhcCCCE-EEeCCCCccc----ccc--CCCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIE----FVKSLGADE-VLDYKTPDGA----ALK--SPSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~----~~~~~g~~~-v~~~~~~~~~----~~~--~~~~~~~  133 (240)
                      +++.++|.||++++|...+..+...|++|+.+.++ ++.+    .+++.+... .+..+-.+..    .++  ....+++
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~i   94 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFSRI   94 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            57899999999999999998888899999988854 3332    222334332 2222211111    111  1122468


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.++|.
T Consensus        95 DilVnnAG~  103 (169)
T PRK06720         95 DMLFQNAGL  103 (169)
T ss_pred             CEEEECCCc
Confidence            999998874

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.15  E-value=0.023  Score=44.08  Aligned_cols=35  Identities=26%  Similarity=0.266  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .+++++|.|++|++|..++..+...|++|+.+.++
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~   40 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAKEGVNVGLLART   40 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            46789999999999999999888999999999875

>PRK05717 oxidoreductase; Validated

Probab=96.15  E-value=0.018  Score=45.25  Aligned_cols=77  Identities=19%  Similarity=0.126  Sum_probs=48.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccH-HHHHhcCCC-EEE--eCCCCc-c-ccccCC--CCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNI-EFVKSLGAD-EVL--DYKTPD-G-AALKSP--SGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~-~~~~~~g~~-~v~--~~~~~~-~-~~~~~~--~~~~~d~v  136 (240)
                      .+++++|+|++|++|..+++.+...|++|+.+.++ ++. +..++++.. ..+  |..+.+ . ..++..  .-.++|++
T Consensus         9 ~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~l   88 (255)
T PRK05717          9 NGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFGRLDAL   88 (255)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            67899999999999999999988899999988754 333 333444432 122  222211 1 111111  11358999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      +.+.|.
T Consensus        89 i~~ag~   94 (255)
T PRK05717         89 VCNAAI   94 (255)
T ss_pred             EECCCc
Confidence            999984

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=96.12  E-value=0.037  Score=44.94  Aligned_cols=91  Identities=14%  Similarity=0.172  Sum_probs=61.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCC--EEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNT--HVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      ..+|.|+| +|.+|....+.++..|.  +|++.+++ ++.+.+++.|.......+ . ...+     ...|+|+.|+...
T Consensus         6 ~~~I~IIG-~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~-~-~~~~-----~~aDvViiavp~~   77 (307)
T PRK07502          6 FDRVALIG-IGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTS-A-AEAV-----KGADLVILCVPVG   77 (307)
T ss_pred             CcEEEEEe-eCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCC-H-HHHh-----cCCCEEEECCCHH
Confidence            46899999 99999999998888885  78888765 677777777753221111 0 1111     3589999999854


Q ss_pred             C----ccccccCCCCCcEEEEeCCCc
Q 045248          144 P----WSTFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus       144 ~----~~~~~~~l~~~G~iv~~g~~~  165 (240)
                      .    +......++++..++.++...
T Consensus        78 ~~~~v~~~l~~~l~~~~iv~dvgs~k  103 (307)
T PRK07502         78 ASGAVAAEIAPHLKPGAIVTDVGSVK  103 (307)
T ss_pred             HHHHHHHHHHhhCCCCCEEEeCccch
Confidence            3    333344567777777776543

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=96.12  E-value=0.029  Score=43.66  Aligned_cols=77  Identities=27%  Similarity=0.314  Sum_probs=47.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-c-c-cH---HHHHhcCCCEEE---eCCCCc--cccccC--CCCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-A-R-NI---EFVKSLGADEVL---DYKTPD--GAALKS--PSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~-~-~~---~~~~~~g~~~v~---~~~~~~--~~~~~~--~~~~~  132 (240)
                      .++.++|+|++|++|..+++.+...|++|+...+ . . ..   +.+++.+.....   |..+..  ...+..  ....+
T Consensus         2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (246)
T PRK12938          2 SQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVGE   81 (246)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            3678999999999999999999999998887653 2 2 22   222334543221   222211  011110  01247


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.+.|.
T Consensus        82 id~li~~ag~   91 (246)
T PRK12938         82 IDVLVNNAGI   91 (246)
T ss_pred             CCEEEECCCC
Confidence            9999999984

>PRK08251 short chain dehydrogenase; Provisional

Probab=96.12  E-value=0.024  Score=44.21  Aligned_cols=38  Identities=21%  Similarity=0.295  Sum_probs=31.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHH
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIE  104 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~  104 (240)
                      +++++|+|++|++|..+++.+...|++|+.+.++ ++.+
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~   40 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLE   40 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            4689999999999999888888889999988864 4433

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=96.11  E-value=0.015  Score=44.32  Aligned_cols=97  Identities=19%  Similarity=0.183  Sum_probs=58.5

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC--EEEEEeCc-cc----HHHHHhcCCCEE-EeCCCCcccccc
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT--HVTASCGA-RN----IEFVKSLGADEV-LDYKTPDGAALK  126 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~~~-~~----~~~~~~~g~~~v-~~~~~~~~~~~~  126 (240)
                      +...+     ++|++||-+|  +|.|..+.-+++..|-  +|+.+... +-    .+.++++|.+.| +...+. ..  -
T Consensus        66 ~~L~l-----~pg~~VLeIG--tGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg-~~--g  135 (209)
T PF01135_consen   66 EALDL-----KPGDRVLEIG--TGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDG-SE--G  135 (209)
T ss_dssp             HHTTC------TT-EEEEES---TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-G-GG--T
T ss_pred             HHHhc-----CCCCEEEEec--CCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcch-hh--c
Confidence            66667     8999999998  3456666666666564  78888864 22    333456665432 111111 11  1


Q ss_pred             CCCCCcccEEEeCCCCCC-ccccccCCCCCcEEEEe
Q 045248          127 SPSGRKYDAVIHCATGIP-WSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       127 ~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~  161 (240)
                      .....+||.|+-+.+-+. -...++.|++||++|..
T Consensus       136 ~~~~apfD~I~v~~a~~~ip~~l~~qL~~gGrLV~p  171 (209)
T PF01135_consen  136 WPEEAPFDRIIVTAAVPEIPEALLEQLKPGGRLVAP  171 (209)
T ss_dssp             TGGG-SEEEEEESSBBSS--HHHHHTEEEEEEEEEE
T ss_pred             cccCCCcCEEEEeeccchHHHHHHHhcCCCcEEEEE
Confidence            112357999998887544 45778899999998864

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.11  E-value=0.097  Score=41.79  Aligned_cols=95  Identities=20%  Similarity=0.162  Sum_probs=66.8

Q ss_pred             hhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCC
Q 045248           41 GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKT  119 (240)
Q Consensus        41 ~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~  119 (240)
                      ..||+....+..+ +..++.    -.|++++|+|.++-+|.-+..++...|+.|+.+.+. ..++.              
T Consensus       137 ~~PcTp~aii~lL-~~~~i~----l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~l~~--------------  197 (285)
T PRK14189        137 FRPCTPYGVMKML-ESIGIP----LRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLAA--------------  197 (285)
T ss_pred             CcCCCHHHHHHHH-HHcCCC----CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCCHHH--------------
Confidence            4577766666666 555553    389999999977777999999999999998875432 22110              


Q ss_pred             CccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248          120 PDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       120 ~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                          ..     ...|+|+-++|.+.+-. -+.++++..++.+|..
T Consensus       198 ----~~-----~~ADIVV~avG~~~~i~-~~~ik~gavVIDVGin  232 (285)
T PRK14189        198 ----HT-----RQADIVVAAVGKRNVLT-ADMVKPGATVIDVGMN  232 (285)
T ss_pred             ----Hh-----hhCCEEEEcCCCcCccC-HHHcCCCCEEEEcccc
Confidence                00     34788888888655322 2778899888888854

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=96.11  E-value=0.016  Score=44.38  Aligned_cols=96  Identities=16%  Similarity=0.011  Sum_probs=56.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHH-HhcCCCEEE------e-CCCCcc----ccccCC---
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFV-KSLGADEVL------D-YKTPDG----AALKSP---  128 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~-~~~g~~~v~------~-~~~~~~----~~~~~~---  128 (240)
                      .++.+||+.|  .|.|.-++.+| .+|+.|++++- +...+.+ ++.+.....      . +.....    ..+...   
T Consensus        33 ~~~~rvLd~G--CG~G~da~~LA-~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~  109 (213)
T TIGR03840        33 PAGARVFVPL--CGKSLDLAWLA-EQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA  109 (213)
T ss_pred             CCCCeEEEeC--CCchhHHHHHH-hCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence            4678999998  44677777776 47999999994 4555543 333322110      0 000010    011111   


Q ss_pred             CCCcccEEEeCCCC---------CCccccccCCCCCcEEEEeCC
Q 045248          129 SGRKYDAVIHCATG---------IPWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       129 ~~~~~d~v~d~~g~---------~~~~~~~~~l~~~G~iv~~g~  163 (240)
                      ....||.|+|+..-         ..+..+.++|+|+|+++.++.
T Consensus       110 ~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~  153 (213)
T TIGR03840       110 DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL  153 (213)
T ss_pred             cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence            12469999997641         236678889999998666543

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.10  E-value=0.16  Score=40.75  Aligned_cols=69  Identities=13%  Similarity=0.093  Sum_probs=44.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHHHH-HhcC----CCEEEeCCCCccccccCCCCCcccEEEe
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNIEFV-KSLG----ADEVLDYKTPDGAALKSPSGRKYDAVIH  138 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~~~-~~~g----~~~v~~~~~~~~~~~~~~~~~~~d~v~d  138 (240)
                      .+++++|+| +|+.|.+++..+...|+ +|+.+.++ ++.+.+ ++++    ...+....+. ..     .-..+|+||+
T Consensus       126 ~~k~vlIlG-aGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~-~~-----~~~~aDiVIn  198 (284)
T PRK12549        126 SLERVVQLG-AGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDL-AA-----ALAAADGLVH  198 (284)
T ss_pred             cCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccch-Hh-----hhCCCCEEEE
Confidence            568999999 89999999999999999 77777765 444433 3332    1122221110 00     1135899999


Q ss_pred             CCC
Q 045248          139 CAT  141 (240)
Q Consensus       139 ~~g  141 (240)
                      |+.
T Consensus       199 aTp  201 (284)
T PRK12549        199 ATP  201 (284)
T ss_pred             CCc
Confidence            964

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=96.08  E-value=0.024  Score=44.29  Aligned_cols=74  Identities=23%  Similarity=0.256  Sum_probs=47.2

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH-hcCCC-EEE--eCCCCc--cccccCC--CCCcccEEEeC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK-SLGAD-EVL--DYKTPD--GAALKSP--SGRKYDAVIHC  139 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~-~~g~~-~v~--~~~~~~--~~~~~~~--~~~~~d~v~d~  139 (240)
                      +++|+|++|++|..+++.+...|++|+.+++. ++.+.+. .++.. ..+  |..+..  ...+...  ...++|.++.+
T Consensus         2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~   81 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVNN   81 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            68999999999999999999999999999875 4444432 34432 122  222211  1111111  12469999999


Q ss_pred             CCC
Q 045248          140 ATG  142 (240)
Q Consensus       140 ~g~  142 (240)
                      +|.
T Consensus        82 ag~   84 (248)
T PRK10538         82 AGL   84 (248)
T ss_pred             CCc
Confidence            874

>PRK05650 short chain dehydrogenase; Provisional

Probab=96.08  E-value=0.025  Score=44.87  Aligned_cols=74  Identities=14%  Similarity=0.096  Sum_probs=45.9

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH----HHhcCCCE-EEeCCCCccc----cccC--CCCCcccEE
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF----VKSLGADE-VLDYKTPDGA----ALKS--PSGRKYDAV  136 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~----~~~~g~~~-v~~~~~~~~~----~~~~--~~~~~~d~v  136 (240)
                      +++|+||+|++|..+++.+...|++|+.+.++ ++.+.    ++..+... .+..+-.+..    .+..  ....++|++
T Consensus         2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~l   81 (270)
T PRK05650          2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDVI   81 (270)
T ss_pred             EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            68999999999999998888899999988864 33332    22334332 2211111111    1111  112469999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      |.++|.
T Consensus        82 I~~ag~   87 (270)
T PRK05650         82 VNNAGV   87 (270)
T ss_pred             EECCCC
Confidence            999984

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.08  E-value=0.11  Score=41.43  Aligned_cols=95  Identities=19%  Similarity=0.131  Sum_probs=67.7

Q ss_pred             hhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCC
Q 045248           41 GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKT  119 (240)
Q Consensus        41 ~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~  119 (240)
                      ..||+....+..+ +..++.    -.|++++|+|.+.-+|.-+..++...|+.|+.+.+. ..++..             
T Consensus       138 ~~PcTp~av~~ll-~~~~i~----l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~~~-------------  199 (285)
T PRK10792        138 LRPCTPRGIMTLL-ERYGID----TYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLRHH-------------  199 (285)
T ss_pred             CCCCCHHHHHHHH-HHcCCC----CCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHHHH-------------
Confidence            4578776777677 555553    279999999976679999999999999988877643 221110             


Q ss_pred             CccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248          120 PDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       120 ~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                           .     ...|+++.++|.+.+-. -+.++++..++.+|..
T Consensus       200 -----~-----~~ADIvi~avG~p~~v~-~~~vk~gavVIDvGin  233 (285)
T PRK10792        200 -----V-----RNADLLVVAVGKPGFIP-GEWIKPGAIVIDVGIN  233 (285)
T ss_pred             -----H-----hhCCEEEEcCCCccccc-HHHcCCCcEEEEcccc
Confidence                 0     34788999998765322 2678888888888843

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=96.07  E-value=0.029  Score=46.42  Aligned_cols=36  Identities=25%  Similarity=0.262  Sum_probs=32.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ..+.+|||+||+|.+|..+++.+...|++|+++.++
T Consensus         8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~   43 (353)
T PLN02896          8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRD   43 (353)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            467899999999999999999999999999988764

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=96.06  E-value=0.025  Score=43.43  Aligned_cols=91  Identities=8%  Similarity=-0.011  Sum_probs=57.9

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc--ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA--RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~--~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      -++.+|||+| +|.++.-=++.+...|++|.++++.  +....+.+.|....+. ++.....+     .++++||-+++.
T Consensus        23 ~~~~~VLVVG-GG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~-r~~~~~dl-----~g~~LViaATdD   95 (223)
T PRK05562         23 SNKIKVLIIG-GGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIK-GNYDKEFI-----KDKHLIVIATDD   95 (223)
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEe-CCCChHHh-----CCCcEEEECCCC
Confidence            3678999999 8999988788888899999999865  3444444444333322 22111112     468999999987


Q ss_pred             CCccccccCC-CCCcEEEEeC
Q 045248          143 IPWSTFEPNL-GTNGKVIDIT  162 (240)
Q Consensus       143 ~~~~~~~~~l-~~~G~iv~~g  162 (240)
                      +.++..+... +..+.++...
T Consensus        96 ~~vN~~I~~~a~~~~~lvn~v  116 (223)
T PRK05562         96 EKLNNKIRKHCDRLYKLYIDC  116 (223)
T ss_pred             HHHHHHHHHHHHHcCCeEEEc
Confidence            6655444433 3446555543

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.05  E-value=0.018  Score=44.87  Aligned_cols=77  Identities=18%  Similarity=0.114  Sum_probs=48.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcC--CC-EEEeC--CCCc-c-ccccC--CCCCccc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLG--AD-EVLDY--KTPD-G-AALKS--PSGRKYD  134 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g--~~-~v~~~--~~~~-~-~~~~~--~~~~~~d  134 (240)
                      +++++||+||+|++|..+++.+...|++|+.++++ ++.+.+ .++.  .. ..+..  .+.. . ..+..  ....++|
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   83 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSVD   83 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            56799999999999999999888899999999975 444333 2222  21 12211  1111 1 11111  1124689


Q ss_pred             EEEeCCCC
Q 045248          135 AVIHCATG  142 (240)
Q Consensus       135 ~v~d~~g~  142 (240)
                      ++|.+.|.
T Consensus        84 ~vi~~ag~   91 (251)
T PRK07231         84 ILVNNAGT   91 (251)
T ss_pred             EEEECCCC
Confidence            99999984

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=96.04  E-value=0.017  Score=46.16  Aligned_cols=93  Identities=19%  Similarity=0.212  Sum_probs=64.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEe-CCCCccccccCCCCCcccEEEeCC---
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLD-YKTPDGAALKSPSGRKYDAVIHCA---  140 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~-~~~~~~~~~~~~~~~~~d~v~d~~---  140 (240)
                      +..+|.|+| .|.+|.-+..+|..+|++|...+.+ +|++++..+-..++-. ++..  ..+++ .-.+.|++|..+   
T Consensus       167 ~~~kv~iiG-GGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~--~~iee-~v~~aDlvIgaVLIp  242 (371)
T COG0686         167 LPAKVVVLG-GGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTP--SNIEE-AVKKADLVIGAVLIP  242 (371)
T ss_pred             CCccEEEEC-CccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCH--HHHHH-HhhhccEEEEEEEec
Confidence            345677888 7999999999999999999999965 8888887654333211 2221  11111 114688998876   


Q ss_pred             CCC---C-ccccccCCCCCcEEEEeC
Q 045248          141 TGI---P-WSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       141 g~~---~-~~~~~~~l~~~G~iv~~g  162 (240)
                      |..   . .++.++.++||+.++.+.
T Consensus       243 gakaPkLvt~e~vk~MkpGsVivDVA  268 (371)
T COG0686         243 GAKAPKLVTREMVKQMKPGSVIVDVA  268 (371)
T ss_pred             CCCCceehhHHHHHhcCCCcEEEEEE
Confidence            332   1 567789999999998774

>PRK08219 short chain dehydrogenase; Provisional

Probab=96.04  E-value=0.021  Score=43.83  Aligned_cols=75  Identities=16%  Similarity=0.170  Sum_probs=45.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH-hcCCCEEEeCCCCcccccc-CCC-CCcccEEEeCCCC
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK-SLGADEVLDYKTPDGAALK-SPS-GRKYDAVIHCATG  142 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~-~~g~~~v~~~~~~~~~~~~-~~~-~~~~d~v~d~~g~  142 (240)
                      .++++|.||+|.+|..++..+... ++|+++.++ ++.+.+. +.....++..+-.+...+. ... -.++|.++.++|.
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~   81 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVHNAGV   81 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEECCCc
Confidence            367999999999999988777766 899999875 4444333 2221223322222211111 111 1269999999984

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.02  E-value=0.035  Score=50.02  Aligned_cols=76  Identities=18%  Similarity=0.201  Sum_probs=50.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcc----------------------cHHHHHhcCCCEEEeCCCCcc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGAR----------------------NIEFVKSLGADEVLDYKTPDG  122 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~----------------------~~~~~~~~g~~~v~~~~~~~~  122 (240)
                      ..+++|+|+| +|+.|+.++..+...|++|+++.+..                      +.+.++++|.+...+..-...
T Consensus       325 ~~~~~VaIIG-aGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~  403 (654)
T PRK12769        325 KSDKRVAIIG-AGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKD  403 (654)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCc
Confidence            3688999999 99999999999999999998887532                      244556777543322111000


Q ss_pred             ccccCCCCCcccEEEeCCCC
Q 045248          123 AALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus       123 ~~~~~~~~~~~d~v~d~~g~  142 (240)
                      ..+.. ...++|.||.++|.
T Consensus       404 i~~~~-~~~~~DavilAtGa  422 (654)
T PRK12769        404 ISLES-LLEDYDAVFVGVGT  422 (654)
T ss_pred             CCHHH-HHhcCCEEEEeCCC
Confidence            00111 11469999999985

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.02  E-value=0.063  Score=44.14  Aligned_cols=88  Identities=19%  Similarity=0.126  Sum_probs=60.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC--
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI--  143 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~--  143 (240)
                      .|++|.|+| .|.+|...++.++.+|++|++..+..+.......|..  .  .+. ...+     ...|+|+-++...  
T Consensus       149 ~gktvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~--~--~~l-~ell-----~~aDiV~l~lP~t~~  217 (333)
T PRK13243        149 YGKTIGIIG-FGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAE--Y--RPL-EELL-----RESDFVSLHVPLTKE  217 (333)
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCE--e--cCH-HHHH-----hhCCEEEEeCCCChH
Confidence            689999999 9999999999999999999988865333333344432  1  110 1111     2468998888631  


Q ss_pred             C----ccccccCCCCCcEEEEeCCC
Q 045248          144 P----WSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       144 ~----~~~~~~~l~~~G~iv~~g~~  164 (240)
                      +    -...+..++++..++.++..
T Consensus       218 T~~~i~~~~~~~mk~ga~lIN~aRg  242 (333)
T PRK13243        218 TYHMINEERLKLMKPTAILVNTARG  242 (333)
T ss_pred             HhhccCHHHHhcCCCCeEEEECcCc
Confidence            1    23566788999998888753

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.01  E-value=0.011  Score=49.11  Aligned_cols=73  Identities=23%  Similarity=0.246  Sum_probs=49.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCC-CEEEEEeCc-ccHHHHHhcC---C-CEEEeCCCCccccccCCCCCcccEEEeCCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGN-THVTASCGA-RNIEFVKSLG---A-DEVLDYKTPDGAALKSPSGRKYDAVIHCAT  141 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g-~~v~~~~~~-~~~~~~~~~g---~-~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g  141 (240)
                      .+|||+| +|++|+.+++.+.+.| .+|++.+++ ++.+.+....   . ...+|-.+.+ ...+..  .++|+||++..
T Consensus         2 ~~ilviG-aG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~-al~~li--~~~d~VIn~~p   77 (389)
T COG1748           2 MKILVIG-AGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVD-ALVALI--KDFDLVINAAP   77 (389)
T ss_pred             CcEEEEC-CchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChH-HHHHHH--hcCCEEEEeCC
Confidence            5799999 7999999999999999 599999986 7777775543   1 1233333221 111111  23599999997


Q ss_pred             CCC
Q 045248          142 GIP  144 (240)
Q Consensus       142 ~~~  144 (240)
                      ...
T Consensus        78 ~~~   80 (389)
T COG1748          78 PFV   80 (389)
T ss_pred             chh
Confidence            644

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.00  E-value=0.21  Score=35.46  Aligned_cols=96  Identities=18%  Similarity=0.130  Sum_probs=66.9

Q ss_pred             hhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCC
Q 045248           41 GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKT  119 (240)
Q Consensus        41 ~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~  119 (240)
                      ..|+........+ +..+++    -.|++++|+|.+..+|.-+..++...|+.|+.+.+. ...+..             
T Consensus         7 ~~p~t~~a~~~ll-~~~~~~----~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~-------------   68 (140)
T cd05212           7 FVSPVAKAVKELL-NKEGVR----LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSK-------------   68 (140)
T ss_pred             ccccHHHHHHHHH-HHcCCC----CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHH-------------
Confidence            4466655555555 555553    389999999999999999999999999999888753 222211             


Q ss_pred             CccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCc
Q 045248          120 PDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus       120 ~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~  165 (240)
                           .     +..|+|+-++|.+.+ ---+.+++|..++.+|...
T Consensus        69 -----v-----~~ADIVvsAtg~~~~-i~~~~ikpGa~Vidvg~~~  103 (140)
T cd05212          69 -----V-----HDADVVVVGSPKPEK-VPTEWIKPGATVINCSPTK  103 (140)
T ss_pred             -----H-----hhCCEEEEecCCCCc-cCHHHcCCCCEEEEcCCCc
Confidence                 0     347788888886542 2235688888888877543

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK06484 short chain dehydrogenase; Validated

Probab=96.00  E-value=0.021  Score=49.84  Aligned_cols=78  Identities=23%  Similarity=0.264  Sum_probs=51.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCCE-E--EeCCCCc-c-ccccCC--CCCcccE
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGADE-V--LDYKTPD-G-AALKSP--SGRKYDA  135 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~~-v--~~~~~~~-~-~~~~~~--~~~~~d~  135 (240)
                      .++++++|+|+++++|.++++.+...|++|+.+.++ ++.+.+ ++++... .  .|..++. . ..+...  ...++|+
T Consensus         3 ~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~   82 (520)
T PRK06484          3 AQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFEQLHREFGRIDV   82 (520)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHHhCCCCE
Confidence            467899999999999999999999999999999864 454433 4555432 1  2322222 1 111111  1246999


Q ss_pred             EEeCCCC
Q 045248          136 VIHCATG  142 (240)
Q Consensus       136 v~d~~g~  142 (240)
                      ++.+.|.
T Consensus        83 li~nag~   89 (520)
T PRK06484         83 LVNNAGV   89 (520)
T ss_pred             EEECCCc
Confidence            9999874

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=95.99  E-value=0.031  Score=44.18  Aligned_cols=77  Identities=16%  Similarity=0.105  Sum_probs=48.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCC-EEEeCCCCccc----cccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGAD-EVLDYKTPDGA----ALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~-~v~~~~~~~~~----~~~~--~~~~~~  133 (240)
                      .+++++|+|+++++|..++..+...|++|+.+.++ ++.+.+    ++.|.. ..+..+-.+..    .+..  ..-.++
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   88 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGVI   88 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence            67899999999999999998888899999888864 433322    233432 22222211111    1111  011468


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.+.|.
T Consensus        89 d~li~~ag~   97 (265)
T PRK07097         89 DILVNNAGI   97 (265)
T ss_pred             CEEEECCCC
Confidence            999999983

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=95.99  E-value=0.0099  Score=41.42  Aligned_cols=90  Identities=11%  Similarity=0.124  Sum_probs=57.3

Q ss_pred             EEEEcCCchHHHHHHHHHHhCC--CEEEEEeC--c-c-cHHHHHhcCCCEEEeCCCCcccc-------------------
Q 045248           70 ILVTAASGGVGHYAVQLAKLGN--THVTASCG--A-R-NIEFVKSLGADEVLDYKTPDGAA-------------------  124 (240)
Q Consensus        70 vlV~G~~g~vG~~~~~~a~~~g--~~v~~~~~--~-~-~~~~~~~~g~~~v~~~~~~~~~~-------------------  124 (240)
                      |.|.|++|.+|..++++.+.+.  ++|++..-  + + -.+.++++.+..+.-.++.....                   
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~~   80 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLSGPE   80 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESHH
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeChH
Confidence            5789999999999999999988  68888883  2 2 24566788887776544322110                   


Q ss_pred             --ccCCCCCcccEEEeCCCCC-CccccccCCCCCcEEE
Q 045248          125 --LKSPSGRKYDAVIHCATGI-PWSTFEPNLGTNGKVI  159 (240)
Q Consensus       125 --~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv  159 (240)
                        .+......+|+++..+.+. -+...+..++.+=++.
T Consensus        81 ~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~gk~ia  118 (129)
T PF02670_consen   81 GLEELAEEPEVDIVVNAIVGFAGLKPTLAAIKAGKDIA  118 (129)
T ss_dssp             HHHHHHTHTT-SEEEE--SSGGGHHHHHHHHHTTSEEE
T ss_pred             HHHHHhcCCCCCEEEEeCcccchHHHHHHHHHCCCeEE
Confidence              0111225689998888663 3777777777654443

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>PRK05854 short chain dehydrogenase; Provisional

Probab=95.97  E-value=0.019  Score=46.67  Aligned_cols=35  Identities=23%  Similarity=0.210  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .+++++|+||++++|..+++.+...|++|+.++++
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~   47 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRN   47 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999999999999999888999999999875

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.97  E-value=0.027  Score=44.45  Aligned_cols=77  Identities=18%  Similarity=0.224  Sum_probs=47.3

Q ss_pred             CCCCeEEEEcCCc--hHHHHHHHHHHhCCCEEEEEeCccc----HHHH-HhcCCCEEE--eCCCCc--cccccC--CCCC
Q 045248           65 GQQKNILVTAASG--GVGHYAVQLAKLGNTHVTASCGARN----IEFV-KSLGADEVL--DYKTPD--GAALKS--PSGR  131 (240)
Q Consensus        65 ~~g~~vlV~G~~g--~vG~~~~~~a~~~g~~v~~~~~~~~----~~~~-~~~g~~~v~--~~~~~~--~~~~~~--~~~~  131 (240)
                      -.++.++|+||++  ++|.++++.+...|++|+...++++    .+.+ ++.|....+  |-.+..  ...++.  ..-.
T Consensus         6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g   85 (260)
T PRK06603          6 LQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWG   85 (260)
T ss_pred             cCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcC
Confidence            3678999999886  8999999888889999988775422    2222 233433222  333322  111111  1124


Q ss_pred             cccEEEeCCC
Q 045248          132 KYDAVIHCAT  141 (240)
Q Consensus       132 ~~d~v~d~~g  141 (240)
                      ++|+++.+.|
T Consensus        86 ~iDilVnnag   95 (260)
T PRK06603         86 SFDFLLHGMA   95 (260)
T ss_pred             CccEEEEccc
Confidence            6999999887

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=95.97  E-value=0.031  Score=43.40  Aligned_cols=77  Identities=21%  Similarity=0.245  Sum_probs=48.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCC-EEEeCCCCcccc----ccC--CCCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGAD-EVLDYKTPDGAA----LKS--PSGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~-~v~~~~~~~~~~----~~~--~~~~~~d~v  136 (240)
                      ++++++|.|++|++|..+++.+...|++|+...+. ++.+.+ ...+.. ..+..+-.+...    ...  ..-.++|.+
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   84 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGVDIL   84 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            56899999999999999999888899988877654 444433 334432 222221111111    111  012469999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      +.+.|.
T Consensus        85 i~~ag~   90 (245)
T PRK12936         85 VNNAGI   90 (245)
T ss_pred             EECCCC
Confidence            999984

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.95  E-value=0.036  Score=44.95  Aligned_cols=77  Identities=18%  Similarity=0.091  Sum_probs=47.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc--ccHH----HHHhcCCCEEEe---CCCCc--cccccC-CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA--RNIE----FVKSLGADEVLD---YKTPD--GAALKS-PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~--~~~~----~~~~~g~~~v~~---~~~~~--~~~~~~-~~~~~~  133 (240)
                      .+++++|+|++|++|...++.+...|++|+..++.  .+.+    .++..|....+.   ..+.+  ...++. ....++
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~g~i   90 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGLGGL   90 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHhCCC
Confidence            67899999999999999999888899999888742  2222    223344332221   11111  111111 012479


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |++|.++|.
T Consensus        91 D~li~nAG~   99 (306)
T PRK07792         91 DIVVNNAGI   99 (306)
T ss_pred             CEEEECCCC
Confidence            999999984

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=95.95  E-value=0.035  Score=45.31  Aligned_cols=95  Identities=11%  Similarity=0.089  Sum_probs=58.5

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCC----CEEEEEeCc---ccHHHHHhcCCCE-----EEeC-------CCCccccc----
Q 045248           69 NILVTAASGGVGHYAVQLAKLGN----THVTASCGA---RNIEFVKSLGADE-----VLDY-------KTPDGAAL----  125 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g----~~v~~~~~~---~~~~~~~~~g~~~-----v~~~-------~~~~~~~~----  125 (240)
                      +|.|+| .|.+|...++.+...+    ++|+.+...   +.+.++.++...+     -+..       ........    
T Consensus         1 ~IaInG-fGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~   79 (325)
T TIGR01532         1 RVAING-FGRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT   79 (325)
T ss_pred             CEEEEC-CCHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence            478999 6999999999988654    677777642   3445554433210     0000       01010111    


Q ss_pred             -cCC--CCCcccEEEeCCCCCC-ccccccCCCCCcEEEEeCCC
Q 045248          126 -KSP--SGRKYDAVIHCATGIP-WSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       126 -~~~--~~~~~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~g~~  164 (240)
                       ...  ...++|+|++|+|... ...+...++.|++.|.++.+
T Consensus        80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP  122 (325)
T TIGR01532        80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHP  122 (325)
T ss_pred             hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCC
Confidence             111  2358999999999754 66677788888888888754

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=95.94  E-value=0.038  Score=41.38  Aligned_cols=94  Identities=14%  Similarity=0.103  Sum_probs=52.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCC-CEEEEEeCcccHHHHHhcCCCEEE--eCCCCc-c-ccccCCCCCcccEEEe-
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGN-THVTASCGARNIEFVKSLGADEVL--DYKTPD-G-AALKSPSGRKYDAVIH-  138 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~g~~~v~--~~~~~~-~-~~~~~~~~~~~d~v~d-  138 (240)
                      +++++||.+| +|.-++......+..+ .+|++++.+..+   +..+.. ++  +..+.. . ...+.....++|+|+. 
T Consensus        31 ~~g~~VLDiG-~GtG~~~~~l~~~~~~~~~v~~vDis~~~---~~~~i~-~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~  105 (188)
T TIGR00438        31 KPGDTVLDLG-AAPGGWSQVAVEQVGGKGRVIAVDLQPMK---PIENVD-FIRGDFTDEEVLNKIRERVGDDKVDVVMSD  105 (188)
T ss_pred             CCCCEEEEec-CCCCHHHHHHHHHhCCCceEEEEeccccc---cCCCce-EEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence            7899999999 6665554433333334 389999865322   112222 22  222211 1 1112234567999995 


Q ss_pred             C----CCC-------------CCccccccCCCCCcEEEEeCC
Q 045248          139 C----ATG-------------IPWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       139 ~----~g~-------------~~~~~~~~~l~~~G~iv~~g~  163 (240)
                      .    .|.             ..+..+.+.|+++|+++....
T Consensus       106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~  147 (188)
T TIGR00438       106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF  147 (188)
T ss_pred             CCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence            2    221             125567889999999887543

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.94  E-value=0.038  Score=43.68  Aligned_cols=77  Identities=17%  Similarity=0.190  Sum_probs=46.9

Q ss_pred             CCCeEEEEcC--CchHHHHHHHHHHhCCCEEEEEeCccc-HHHHH----hcCCCEEE--eCCCCc--cccccC--CCCCc
Q 045248           66 QQKNILVTAA--SGGVGHYAVQLAKLGNTHVTASCGARN-IEFVK----SLGADEVL--DYKTPD--GAALKS--PSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~--~g~vG~~~~~~a~~~g~~v~~~~~~~~-~~~~~----~~g~~~v~--~~~~~~--~~~~~~--~~~~~  132 (240)
                      .+++++|+||  ++++|.++++.+...|++|+.+.+.++ .+.++    +.|....+  |-.+.+  ...+..  ....+
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   84 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWDG   84 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            5789999996  569999999999999999988764322 22222    33432223  222221  111111  11246


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.++|-
T Consensus        85 iD~lVnnAG~   94 (261)
T PRK08690         85 LDGLVHSIGF   94 (261)
T ss_pred             CcEEEECCcc
Confidence            9999999973

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.94  E-value=0.16  Score=40.91  Aligned_cols=94  Identities=18%  Similarity=0.087  Sum_probs=65.7

Q ss_pred             hhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCC
Q 045248           41 GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKT  119 (240)
Q Consensus        41 ~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~  119 (240)
                      .+||+....+..+ +..+++    -.|++|.|+|.++-+|.-...++...|+.|++..+. ...+.+             
T Consensus       138 ~~PcTp~aii~lL-~~~~i~----l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e~-------------  199 (301)
T PRK14194        138 LTPCTPSGCLRLL-EDTCGD----LTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKAL-------------  199 (301)
T ss_pred             CCCCcHHHHHHHH-HHhCCC----CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHHH-------------
Confidence            4577776666666 555553    389999999966799999999999999999888643 211111             


Q ss_pred             CccccccCCCCCcccEEEeCCCCCC-ccccccCCCCCcEEEEeCCC
Q 045248          120 PDGAALKSPSGRKYDAVIHCATGIP-WSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       120 ~~~~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~g~~  164 (240)
                           .     ...|+|+-++|.+. +...  .+++|..++.+|..
T Consensus       200 -----~-----~~ADIVIsavg~~~~v~~~--~ik~GaiVIDvgin  233 (301)
T PRK14194        200 -----C-----RQADIVVAAVGRPRLIDAD--WLKPGAVVIDVGIN  233 (301)
T ss_pred             -----H-----hcCCEEEEecCChhcccHh--hccCCcEEEEeccc
Confidence                 0     23678888888644 3333  37888888888743

>PLN02780 ketoreductase/ oxidoreductase

Probab=95.91  E-value=0.017  Score=47.14  Aligned_cols=40  Identities=13%  Similarity=0.052  Sum_probs=34.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF  105 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~  105 (240)
                      .|++++|+||++++|.+.++.+...|++|+.++++ ++.+.
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~   92 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKD   92 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHH
Confidence            58999999999999999998888899999999975 55443

>PRK08317 hypothetical protein; Provisional

Probab=95.91  E-value=0.027  Score=43.55  Aligned_cols=100  Identities=18%  Similarity=0.208  Sum_probs=61.8

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC--CEEEEEeCc-ccHHHHHhc--CCCEEEeCCCCccccccCCC
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN--THVTASCGA-RNIEFVKSL--GADEVLDYKTPDGAALKSPS  129 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g--~~v~~~~~~-~~~~~~~~~--g~~~v~~~~~~~~~~~~~~~  129 (240)
                      +...+     .++.+||-+| +|. |..+..++...+  .++++++.+ +..+.+++.  .....+.....+..... ..
T Consensus        13 ~~~~~-----~~~~~vLdiG-~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~   84 (241)
T PRK08317         13 ELLAV-----QPGDRVLDVG-CGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP-FP   84 (241)
T ss_pred             HHcCC-----CCCCEEEEeC-CCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC-CC
Confidence            55566     7889999999 554 888888888773  589999964 566666544  11111111111111111 12


Q ss_pred             CCcccEEEeCCC-----C--CCccccccCCCCCcEEEEeC
Q 045248          130 GRKYDAVIHCAT-----G--IPWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       130 ~~~~d~v~d~~g-----~--~~~~~~~~~l~~~G~iv~~g  162 (240)
                      ...||+|+-.-.     .  ..+..+.++|+++|.++...
T Consensus        85 ~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         85 DGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             CCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence            356898875432     2  23778888999999988664

>PRK07062 short chain dehydrogenase; Provisional

Probab=95.90  E-value=0.023  Score=44.81  Aligned_cols=39  Identities=21%  Similarity=0.278  Sum_probs=33.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHH
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIE  104 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~  104 (240)
                      .+++++|+||++++|..+++.+...|++|+.+.++ ++.+
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~   46 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLA   46 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHH
Confidence            57899999999999999999999999999998875 4443

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=95.89  E-value=0.041  Score=42.69  Aligned_cols=34  Identities=26%  Similarity=0.299  Sum_probs=30.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      .+++++|.|++|++|..++..+...|++|+++.+
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~   37 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGANVVINYA   37 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence            5678999999999999999999999999877764

>PRK07576 short chain dehydrogenase; Provisional

Probab=95.89  E-value=0.023  Score=44.91  Aligned_cols=35  Identities=17%  Similarity=0.242  Sum_probs=32.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ++++++|+||+|++|..+++.+...|++|+.+.++
T Consensus         8 ~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~   42 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAFARAGANVAVASRS   42 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            67899999999999999999999999999999864

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=95.88  E-value=0.017  Score=45.55  Aligned_cols=72  Identities=6%  Similarity=-0.048  Sum_probs=48.6

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCAT  141 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g  141 (240)
                      +|||.||+|- |..++..+...|.+|+++..+ .+.+.+...|...+....-............++|+|+|++.
T Consensus         2 ~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtH   74 (256)
T TIGR00715         2 TVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTGALDPQELREFLKRHSIDILVDATH   74 (256)
T ss_pred             eEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCccccccccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCC
Confidence            6899997775 999888888889999988865 55666666665555532221122223344567899999885

This enzyme was found to be a monomer by gel filtration.

>PLN00198 anthocyanidin reductase; Provisional

Probab=95.87  E-value=0.046  Score=44.89  Aligned_cols=36  Identities=14%  Similarity=0.126  Sum_probs=31.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ..+++|||+||+|.+|..+++.+...|++|+++.++
T Consensus         7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~   42 (338)
T PLN00198          7 TGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRD   42 (338)
T ss_pred             CCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECC
Confidence            357899999999999999999999899999888754

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.86  E-value=0.046  Score=43.52  Aligned_cols=78  Identities=14%  Similarity=0.102  Sum_probs=48.0

Q ss_pred             CCCCeEEEEcCC--chHHHHHHHHHHhCCCEEEEEeCcc----cHHHH-HhcCCCEEEeC--CCCc--cccccC--CCCC
Q 045248           65 GQQKNILVTAAS--GGVGHYAVQLAKLGNTHVTASCGAR----NIEFV-KSLGADEVLDY--KTPD--GAALKS--PSGR  131 (240)
Q Consensus        65 ~~g~~vlV~G~~--g~vG~~~~~~a~~~g~~v~~~~~~~----~~~~~-~~~g~~~v~~~--~~~~--~~~~~~--~~~~  131 (240)
                      -.++++||+||+  +++|.++++.+...|++|+.+.+++    +.+.+ ++++....+..  .+..  ...+..  ....
T Consensus         8 ~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   87 (272)
T PRK08159          8 MAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKKWG   87 (272)
T ss_pred             ccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHhcC
Confidence            367899999986  7999999999999999998876542    22222 34453222322  2211  111111  1124


Q ss_pred             cccEEEeCCCC
Q 045248          132 KYDAVIHCATG  142 (240)
Q Consensus       132 ~~d~v~d~~g~  142 (240)
                      ++|+++.+.|.
T Consensus        88 ~iD~lv~nAG~   98 (272)
T PRK08159         88 KLDFVVHAIGF   98 (272)
T ss_pred             CCcEEEECCcc
Confidence            69999999873

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=95.85  E-value=0.024  Score=44.54  Aligned_cols=77  Identities=21%  Similarity=0.181  Sum_probs=48.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH----hcCCC-EEE--eCCCCc-c-ccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK----SLGAD-EVL--DYKTPD-G-AALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~----~~g~~-~v~--~~~~~~-~-~~~~~--~~~~~~  133 (240)
                      .++++||+|++|++|..+++.+...|++|+.++++ ++.+...    ..+.. ..+  |..+.+ . ..+..  ....++
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~i   90 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGHV   90 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            67899999999999999999988899999998865 4433332    23322 122  222221 1 11111  011468


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |.++.+.|.
T Consensus        91 d~vi~~ag~   99 (259)
T PRK08213         91 DILVNNAGA   99 (259)
T ss_pred             CEEEECCCC
Confidence            999999873

>PRK08703 short chain dehydrogenase; Provisional

Probab=95.85  E-value=0.026  Score=43.82  Aligned_cols=35  Identities=29%  Similarity=0.322  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ++++++|+|++|++|..+++.+...|++|+.++++
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~   39 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGATVILVARH   39 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence            56899999999999999999999999999999875

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=95.85  E-value=0.024  Score=44.43  Aligned_cols=77  Identities=21%  Similarity=0.208  Sum_probs=48.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH----HHhcCCC-EEE--eCCCCc-c-ccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF----VKSLGAD-EVL--DYKTPD-G-AALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~----~~~~g~~-~v~--~~~~~~-~-~~~~~--~~~~~~  133 (240)
                      .++++||+|++|++|..+++.+...|++|+.+.++ ++.+.    +++.|.. ..+  |..+.. . ..+..  ....++
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   88 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGPI   88 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence            57899999999999999999888889999988865 33322    2233322 222  222221 1 11111  112468


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |++|.+.|.
T Consensus        89 d~li~~ag~   97 (255)
T PRK07523         89 DILVNNAGM   97 (255)
T ss_pred             CEEEECCCC
Confidence            999999984

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=95.84  E-value=0.13  Score=39.51  Aligned_cols=98  Identities=20%  Similarity=0.160  Sum_probs=58.9

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC--EEEEEeCc-ccHHHH----HhcCCCEEEeCCCCccccccC
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT--HVTASCGA-RNIEFV----KSLGADEVLDYKTPDGAALKS  127 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~~~-~~~~~~----~~~g~~~v~~~~~~~~~~~~~  127 (240)
                      +...+     +++++||-+|  +|.|..+..+++..+.  +|++++.+ +..+.+    ++.|.+.+- ....+.... .
T Consensus        71 ~~l~~-----~~~~~VLDiG--~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~-~~~~d~~~~-~  141 (215)
T TIGR00080        71 ELLEL-----KPGMKVLEIG--TGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVI-VIVGDGTQG-W  141 (215)
T ss_pred             HHhCC-----CCcCEEEEEC--CCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeE-EEECCcccC-C
Confidence            55666     7999999998  4456667777777653  79999854 444444    455543221 111111100 1


Q ss_pred             CCCCcccEEEeCCCC-CCccccccCCCCCcEEEEe
Q 045248          128 PSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       128 ~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~  161 (240)
                      .....||+|+-.... .......+.|+++|+++..
T Consensus       142 ~~~~~fD~Ii~~~~~~~~~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       142 EPLAPYDRIYVTAAGPKIPEALIDQLKEGGILVMP  176 (215)
T ss_pred             cccCCCCEEEEcCCcccccHHHHHhcCcCcEEEEE
Confidence            122479998754433 3356777899999998754

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.83  E-value=0.047  Score=39.78  Aligned_cols=78  Identities=18%  Similarity=0.216  Sum_probs=57.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEe-C-cccHHHHHhcCCCEEEeCCCCc-cccc------cCCCCCcccE
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASC-G-ARNIEFVKSLGADEVLDYKTPD-GAAL------KSPSGRKYDA  135 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~-~-~~~~~~~~~~g~~~v~~~~~~~-~~~~------~~~~~~~~d~  135 (240)
                      .+|-.-||.|+++++|.+...-+...|+.|+..+ + +...+.++++|-..++.+.+-. ++.+      ....-+..|.
T Consensus         7 ~kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~vakelg~~~vf~padvtsekdv~aala~ak~kfgrld~   86 (260)
T KOG1199|consen    7 TKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKELGGKVVFTPADVTSEKDVRAALAKAKAKFGRLDA   86 (260)
T ss_pred             hcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHHhCCceEEeccccCcHHHHHHHHHHHHhhccceee
Confidence            4667779999999999999999999999988888 3 3678889999987777544322 1111      1112245799


Q ss_pred             EEeCCCC
Q 045248          136 VIHCATG  142 (240)
Q Consensus       136 v~d~~g~  142 (240)
                      .++|.|-
T Consensus        87 ~vncagi   93 (260)
T KOG1199|consen   87 LVNCAGI   93 (260)
T ss_pred             eeeccce
Confidence            9999984

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.83  E-value=0.16  Score=40.48  Aligned_cols=95  Identities=15%  Similarity=0.104  Sum_probs=66.5

Q ss_pred             hhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCC
Q 045248           41 GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKT  119 (240)
Q Consensus        41 ~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~  119 (240)
                      ..||+....+..+ +..+++    -.|++|+|+|.+.-+|.-+..++...|+.|..+.+. ..++   +           
T Consensus       136 ~~PcTp~avi~lL-~~~~i~----l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~---~-----------  196 (285)
T PRK14191        136 FVPATPMGVMRLL-KHYHIE----IKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLS---F-----------  196 (285)
T ss_pred             CCCCcHHHHHHHH-HHhCCC----CCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHH---H-----------
Confidence            4577776666666 555653    379999999977799999999999999998776432 1111   0           


Q ss_pred             CccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248          120 PDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       120 ~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                          ..     +..|+++-++|.+.+-. -+.+++|..++.+|..
T Consensus       197 ----~~-----~~ADIvV~AvG~p~~i~-~~~vk~GavVIDvGi~  231 (285)
T PRK14191        197 ----YT-----QNADIVCVGVGKPDLIK-ASMVKKGAVVVDIGIN  231 (285)
T ss_pred             ----HH-----HhCCEEEEecCCCCcCC-HHHcCCCcEEEEeecc
Confidence                00     34788888888765422 3467888888888853

>PRK12937 short chain dehydrogenase; Provisional

Probab=95.83  E-value=0.037  Score=43.00  Aligned_cols=34  Identities=24%  Similarity=0.252  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      ++++++|+|++|++|..+++.+...|++++.+.+
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~   37 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAADGFAVAVNYA   37 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecC
Confidence            6789999999999999999999999998887764

>PRK07577 short chain dehydrogenase; Provisional

Probab=95.82  E-value=0.005  Score=47.56  Aligned_cols=73  Identities=16%  Similarity=0.109  Sum_probs=46.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCC-EEEeCCCCc-c-cccc-CCCCCcccEEEeCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGAD-EVLDYKTPD-G-AALK-SPSGRKYDAVIHCAT  141 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~-~v~~~~~~~-~-~~~~-~~~~~~~d~v~d~~g  141 (240)
                      .+++++|+|++|++|..+++.+...|++|+.+.++....    .... ...|..+.. . ..++ .....++|+++.+.|
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~vi~~ag   77 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDD----FPGELFACDLADIEQTAATLAQINEIHPVDAIVNNVG   77 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcccc----cCceEEEeeCCCHHHHHHHHHHHHHhCCCcEEEECCC
Confidence            357899999999999999999999999999998752211    1111 112333222 1 1111 111236899999988


Q ss_pred             C
Q 045248          142 G  142 (240)
Q Consensus       142 ~  142 (240)
                      .
T Consensus        78 ~   78 (234)
T PRK07577         78 I   78 (234)
T ss_pred             C
Confidence            4

>PRK09186 flagellin modification protein A; Provisional

Probab=95.82  E-value=0.027  Score=44.13  Aligned_cols=38  Identities=26%  Similarity=0.232  Sum_probs=33.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccH
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNI  103 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~  103 (240)
                      .+++++|+|++|++|..++..+...|++|+.+.++ ++.
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~   41 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEAL   41 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHH
Confidence            57899999999999999999999999999998864 443

>PRK07890 short chain dehydrogenase; Provisional

Probab=95.81  E-value=0.025  Score=44.31  Aligned_cols=35  Identities=17%  Similarity=0.237  Sum_probs=32.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .+++++|.||+|++|..+++.+...|++|+.+.++
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~   38 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAART   38 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence            67899999999999999999999999999999864

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=95.80  E-value=0.037  Score=44.99  Aligned_cols=36  Identities=31%  Similarity=0.345  Sum_probs=32.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ..+++|||+||+|.+|..++..+...|.+|++++++
T Consensus         2 ~~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~   37 (322)
T PLN02662          2 GEGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRD   37 (322)
T ss_pred             CCCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcC
Confidence            356899999999999999999999999999988864

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.80  E-value=0.027  Score=41.39  Aligned_cols=96  Identities=19%  Similarity=0.147  Sum_probs=60.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHhcCCCEEEeCC-CC---------------c--ccccc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYK-TP---------------D--GAALK  126 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~v~~~~-~~---------------~--~~~~~  126 (240)
                      +..+|+|.| +|.+|+.++++++.+|++|+..+. .++.+..+..+...+.... +.               .  ...+.
T Consensus        19 ~p~~vvv~G-~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~   97 (168)
T PF01262_consen   19 PPAKVVVTG-AGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFA   97 (168)
T ss_dssp             -T-EEEEES-TSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHH
T ss_pred             CCeEEEEEC-CCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHH
Confidence            457899999 999999999999999999999985 4777778777765443311 00               0  00010


Q ss_pred             CCCCCcccEEEeCC---CC--CC--ccccccCCCCCcEEEEeCC
Q 045248          127 SPSGRKYDAVIHCA---TG--IP--WSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       127 ~~~~~~~d~v~d~~---g~--~~--~~~~~~~l~~~G~iv~~g~  163 (240)
                       ..=..+|++|-+.   +.  +.  -+..++.++++..|+.+..
T Consensus        98 -~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~  140 (168)
T PF01262_consen   98 -EFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISC  140 (168)
T ss_dssp             -HHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTG
T ss_pred             -HHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEe
Confidence             0013478888543   22  21  4467778899999988864

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=95.79  E-value=0.027  Score=41.54  Aligned_cols=90  Identities=18%  Similarity=0.176  Sum_probs=57.2

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcC--CCEEEeCCCCccccccCCCCCcccEEEeCCCCC-C
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLG--ADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI-P  144 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g--~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~  144 (240)
                      +|.|+||+|-+|..+++=|+.+|-.|++++++ .+....+..-  -..+++...    ...  .-.|+|+||++.|.. +
T Consensus         2 KIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~----~a~--~l~g~DaVIsA~~~~~~   75 (211)
T COG2910           2 KIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTS----LAS--DLAGHDAVISAFGAGAS   75 (211)
T ss_pred             eEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhh----hHh--hhcCCceEEEeccCCCC
Confidence            58899999999999999999999999999976 4443221110  011222111    001  125799999999854 1


Q ss_pred             -c--------cccccCCCCCc--EEEEeCCC
Q 045248          145 -W--------STFEPNLGTNG--KVIDITPG  164 (240)
Q Consensus       145 -~--------~~~~~~l~~~G--~iv~~g~~  164 (240)
                       -        +..++.|+.-|  |++.+|..
T Consensus        76 ~~~~~~~k~~~~li~~l~~agv~RllVVGGA  106 (211)
T COG2910          76 DNDELHSKSIEALIEALKGAGVPRLLVVGGA  106 (211)
T ss_pred             ChhHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence             1        22555666644  67777643

>PRK07035 short chain dehydrogenase; Provisional

Probab=95.78  E-value=0.027  Score=44.02  Aligned_cols=35  Identities=34%  Similarity=0.368  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .+++++|.|++|++|..+++.+...|++|+.+.+.
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~   41 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRK   41 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            56899999999999999999999999999999864

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.76  E-value=0.041  Score=43.36  Aligned_cols=34  Identities=6%  Similarity=0.065  Sum_probs=30.1

Q ss_pred             CCCeEEEEcCC--chHHHHHHHHHHhCCCEEEEEeC
Q 045248           66 QQKNILVTAAS--GGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        66 ~g~~vlV~G~~--g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      .+++++|+||+  +++|.++++.+...|++|+.+.+
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r   41 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYA   41 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecC
Confidence            57899999986  79999999988899999988865

>PRK06701 short chain dehydrogenase; Provisional

Probab=95.73  E-value=0.04  Score=44.33  Aligned_cols=35  Identities=17%  Similarity=0.212  Sum_probs=30.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .++++||+|++|++|..+++.+...|++|+.+.+.
T Consensus        45 ~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~   79 (290)
T PRK06701         45 KGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLD   79 (290)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999999999999998888899999888753

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=95.73  E-value=0.2  Score=35.95  Aligned_cols=92  Identities=13%  Similarity=0.109  Sum_probs=56.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCC-CEEEEEeCc-ccHH-HHHhcCCCE-EEeCCCCccccccCCCCCcccEEEeCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGN-THVTASCGA-RNIE-FVKSLGADE-VLDYKTPDGAALKSPSGRKYDAVIHCAT  141 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g-~~v~~~~~~-~~~~-~~~~~g~~~-v~~~~~~~~~~~~~~~~~~~d~v~d~~g  141 (240)
                      ++.+++|+| +|++|...++.+...| .+|++..++ ++.+ .+++++... .....+. ...     -.++|+|+.+++
T Consensus        18 ~~~~i~iiG-~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~Dvvi~~~~   90 (155)
T cd01065          18 KGKKVLILG-AGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDL-EEL-----LAEADLIINTTP   90 (155)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecch-hhc-----cccCCEEEeCcC
Confidence            578999999 6999999998888886 578888764 4443 345555421 0111111 111     256999999998


Q ss_pred             CCCc-----cccccCCCCCcEEEEeCCC
Q 045248          142 GIPW-----STFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       142 ~~~~-----~~~~~~l~~~G~iv~~g~~  164 (240)
                      ....     ......++++..++.++..
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~v~D~~~~  118 (155)
T cd01065          91 VGMKPGDELPLPPSLLKPGGVVYDVVYN  118 (155)
T ss_pred             CCCCCCCCCCCCHHHcCCCCEEEEcCcC
Confidence            6432     1112335666666666543

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=95.73  E-value=0.12  Score=41.15  Aligned_cols=65  Identities=12%  Similarity=0.193  Sum_probs=44.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHHHH-HhcCCCEEEeCCCCccccccCCCCCcccEEEeCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNIEFV-KSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCAT  141 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~~~-~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g  141 (240)
                      ..+++++|.| +||.+.+++..+...|+ +|+++.++ ++.+.+ +.++..    +..    ..   ....+|+|++|+.
T Consensus       120 ~~~~~vlilG-aGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~----~~~----~~---~~~~~dlvINaTp  187 (272)
T PRK12550        120 PPDLVVALRG-SGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYE----WRP----DL---GGIEADILVNVTP  187 (272)
T ss_pred             CCCCeEEEEC-CcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCc----chh----hc---ccccCCEEEECCc
Confidence            3456899999 89999999999999998 68888875 444443 444311    110    01   1235899999985

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=95.72  E-value=0.023  Score=44.06  Aligned_cols=70  Identities=27%  Similarity=0.303  Sum_probs=49.7

Q ss_pred             EEEEcCCchHHHHHHHHHHhCCCEEEEEeCcc---cHHHHHhcCCCEEEeCCCCccccc-cCCCCCcccEEEeCCCC
Q 045248           70 ILVTAASGGVGHYAVQLAKLGNTHVTASCGAR---NIEFVKSLGADEVLDYKTPDGAAL-KSPSGRKYDAVIHCATG  142 (240)
Q Consensus        70 vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~---~~~~~~~~g~~~v~~~~~~~~~~~-~~~~~~~~d~v~d~~g~  142 (240)
                      |+|+||+|.+|...++.+...+.+|.+.+++.   ..+.+++.|+..+ ..+-.+...+ ...  .|+|.||-+++.
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv-~~d~~~~~~l~~al--~g~d~v~~~~~~   74 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVV-EADYDDPESLVAAL--KGVDAVFSVTPP   74 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEE-ES-TT-HHHHHHHH--TTCSEEEEESSC
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEe-ecccCCHHHHHHHH--cCCceEEeecCc
Confidence            78999999999999999999888999999853   3566677888543 3222222221 111  479999988884

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK08589 short chain dehydrogenase; Validated

Probab=95.71  E-value=0.031  Score=44.45  Aligned_cols=77  Identities=19%  Similarity=0.141  Sum_probs=48.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHH----HHhcCCC-EEE--eCCCCc--cccccCC--CCCccc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEF----VKSLGAD-EVL--DYKTPD--GAALKSP--SGRKYD  134 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~----~~~~g~~-~v~--~~~~~~--~~~~~~~--~~~~~d  134 (240)
                      .++++||+|+++++|..+++.+...|++|+.+.++++.+.    +++.+.. ..+  |..+..  ...+...  .-.++|
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id   84 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGRVD   84 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCCcC
Confidence            5789999999999999999988889999999986533222    2233322 222  222222  1111110  114689


Q ss_pred             EEEeCCCC
Q 045248          135 AVIHCATG  142 (240)
Q Consensus       135 ~v~d~~g~  142 (240)
                      +++.+.|.
T Consensus        85 ~li~~Ag~   92 (272)
T PRK08589         85 VLFNNAGV   92 (272)
T ss_pred             EEEECCCC
Confidence            99999873

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=95.70  E-value=0.14  Score=39.01  Aligned_cols=96  Identities=20%  Similarity=0.115  Sum_probs=59.2

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC--CEEEEEeCc-ccHHHH----HhcCCC---EEEeCCCCcccc
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN--THVTASCGA-RNIEFV----KSLGAD---EVLDYKTPDGAA  124 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g--~~v~~~~~~-~~~~~~----~~~g~~---~v~~~~~~~~~~  124 (240)
                      +...+     +++++||=+| + |.|..+..+++..+  .+|++++.+ +..+.+    ++.|..   .++..+..  ..
T Consensus        66 ~~l~~-----~~~~~VLDiG-~-GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~--~~  136 (205)
T PRK13944         66 ELIEP-----RPGMKILEVG-T-GSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGK--RG  136 (205)
T ss_pred             HhcCC-----CCCCEEEEEC-c-CccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcc--cC
Confidence            55556     7889999998 3 45777777777664  489999964 434433    344532   22221111  11


Q ss_pred             ccCCCCCcccEEEeCCCCCC-ccccccCCCCCcEEEEe
Q 045248          125 LKSPSGRKYDAVIHCATGIP-WSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       125 ~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~  161 (240)
                      ..  ....||.|+-+..... .....+.|++||+++..
T Consensus       137 ~~--~~~~fD~Ii~~~~~~~~~~~l~~~L~~gG~lvi~  172 (205)
T PRK13944        137 LE--KHAPFDAIIVTAAASTIPSALVRQLKDGGVLVIP  172 (205)
T ss_pred             Cc--cCCCccEEEEccCcchhhHHHHHhcCcCcEEEEE
Confidence            11  1357999987665433 45677899999998754

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=95.70  E-value=0.016  Score=43.87  Aligned_cols=91  Identities=16%  Similarity=0.089  Sum_probs=53.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH----hcCCCEEEeCCCCccccccCCCCCcccEEEeC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK----SLGADEVLDYKTPDGAALKSPSGRKYDAVIHC  139 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~----~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~  139 (240)
                      .++.+||-.| +| .|..+..+++. |.+|++++.+ +..+.++    ..+...+ .....+.....  ....||+|+..
T Consensus        29 ~~~~~vLDiG-cG-~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~~v-~~~~~d~~~~~--~~~~fD~I~~~  102 (197)
T PRK11207         29 VKPGKTLDLG-CG-NGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLDNL-HTAVVDLNNLT--FDGEYDFILST  102 (197)
T ss_pred             CCCCcEEEEC-CC-CCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCCcc-eEEecChhhCC--cCCCcCEEEEe
Confidence            5668899998 44 47777777764 8899999954 4444443    2232211 11111111111  13469999876


Q ss_pred             CCC---------CCccccccCCCCCcEEEEe
Q 045248          140 ATG---------IPWSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       140 ~g~---------~~~~~~~~~l~~~G~iv~~  161 (240)
                      ..-         ..+..+.+.|+++|.++.+
T Consensus       103 ~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207        103 VVLMFLEAKTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             cchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            431         1256677789999996543

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=95.67  E-value=0.034  Score=43.72  Aligned_cols=77  Identities=22%  Similarity=0.272  Sum_probs=48.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccH-HHH---HhcCCCE-E--EeCCCCc--cccccC--CCCCccc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNI-EFV---KSLGADE-V--LDYKTPD--GAALKS--PSGRKYD  134 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~-~~~---~~~g~~~-v--~~~~~~~--~~~~~~--~~~~~~d  134 (240)
                      .++++||+||+|++|..+++.+...|++|+.+.+++.. +..   ++.+.+. .  .|..+..  ...+..  ....++|
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   86 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFGRID   86 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcCCCe
Confidence            57899999999999999999999999999988865322 222   2334321 1  2333321  111111  1124699


Q ss_pred             EEEeCCCC
Q 045248          135 AVIHCATG  142 (240)
Q Consensus       135 ~v~d~~g~  142 (240)
                      +++.++|.
T Consensus        87 ~lv~nAg~   94 (260)
T PRK12823         87 VLINNVGG   94 (260)
T ss_pred             EEEECCcc
Confidence            99999973

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=95.66  E-value=0.039  Score=45.42  Aligned_cols=33  Identities=21%  Similarity=0.208  Sum_probs=29.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ++|||+||+|.+|..+++.+...|.+|+++++.
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~   33 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRR   33 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecC
Confidence            479999999999999999999999999998864

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=95.65  E-value=0.028  Score=43.21  Aligned_cols=94  Identities=14%  Similarity=-0.008  Sum_probs=54.9

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHH-HhcCCCEE---------EeCCCCcc--ccccC---C
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFV-KSLGADEV---------LDYKTPDG--AALKS---P  128 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~-~~~g~~~v---------~~~~~~~~--~~~~~---~  128 (240)
                      .++.+||+.|  .|.|.-++.+|. +|++|++++- +...+.+ ++.+....         ....+-..  ..+..   .
T Consensus        36 ~~~~rvL~~g--CG~G~da~~LA~-~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~  112 (218)
T PRK13255         36 PAGSRVLVPL--CGKSLDMLWLAE-QGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA  112 (218)
T ss_pred             CCCCeEEEeC--CCChHhHHHHHh-CCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence            5678999998  456777777764 7999999994 4544443 33332211         00000000  00111   1


Q ss_pred             CCCcccEEEeCCC---------CCCccccccCCCCCcEEEEe
Q 045248          129 SGRKYDAVIHCAT---------GIPWSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       129 ~~~~~d~v~d~~g---------~~~~~~~~~~l~~~G~iv~~  161 (240)
                      ....||.|+|...         ...+..+.++|+|+|+++.+
T Consensus       113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~  154 (218)
T PRK13255        113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV  154 (218)
T ss_pred             cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence            1246899999774         12366788899999875543

>PRK07791 short chain dehydrogenase; Provisional

Probab=95.63  E-value=0.059  Score=43.21  Aligned_cols=35  Identities=20%  Similarity=0.216  Sum_probs=31.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      -.+++++|+||++++|..+++.+...|++|+.+.+
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~   38 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDI   38 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeC
Confidence            36789999999999999999988889999888764

>PRK06101 short chain dehydrogenase; Provisional

Probab=95.62  E-value=0.031  Score=43.45  Aligned_cols=41  Identities=17%  Similarity=0.191  Sum_probs=33.7

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHh
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKS  108 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~  108 (240)
                      .+++|+||+|++|..++..+...|++|++++++ ++.+.+.+
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~   43 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHT   43 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH
Confidence            568999999999999888888899999999875 55555544

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.62  E-value=0.083  Score=35.98  Aligned_cols=71  Identities=21%  Similarity=0.258  Sum_probs=49.9

Q ss_pred             EEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           70 ILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        70 vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      |+|+| .|.+|..+++.++..+.+|+.++.+ ++.+.+++.|. .++..+..+...++..+-..++.++-+.+.
T Consensus         1 vvI~G-~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~-~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~   72 (116)
T PF02254_consen    1 VVIIG-YGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGV-EVIYGDATDPEVLERAGIEKADAVVILTDD   72 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTS-EEEES-TTSHHHHHHTTGGCESEEEEESSS
T ss_pred             eEEEc-CCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhccc-ccccccchhhhHHhhcCccccCEEEEccCC
Confidence            57899 8999999999999977799999975 78888888884 455444433334444444567777766664

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PLN02686 cinnamoyl-CoA reductase

Probab=95.61  E-value=0.048  Score=45.45  Aligned_cols=42  Identities=14%  Similarity=0.067  Sum_probs=34.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV  106 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~  106 (240)
                      ..+++|||+||+|.+|..+++.+...|++|+++.++ ++.+.+
T Consensus        51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l   93 (367)
T PLN02686         51 AEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKL   93 (367)
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            578899999999999999999999999999887754 433333

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=95.60  E-value=0.034  Score=43.64  Aligned_cols=77  Identities=17%  Similarity=0.145  Sum_probs=48.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCC-EEE--eCCCCc--cccccC--CCCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGAD-EVL--DYKTPD--GAALKS--PSGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~-~v~--~~~~~~--~~~~~~--~~~~~~d~v  136 (240)
                      .+++++|+|++|++|..+++.+...|++|+.++++ ++.+.+ ++++.. ..+  |-.+..  ...+..  ....++|++
T Consensus         5 ~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~l   84 (257)
T PRK07067          5 QGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGIDIL   84 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            56789999999999999999999999999999865 444333 334322 122  222211  111111  011468999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      +.+.|.
T Consensus        85 i~~ag~   90 (257)
T PRK07067         85 FNNAAL   90 (257)
T ss_pred             EECCCc
Confidence            998873

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=95.59  E-value=0.058  Score=40.27  Aligned_cols=75  Identities=21%  Similarity=0.237  Sum_probs=51.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc--ccHHHHHhcCC--CE-EE--eCCCCc-cc----cccCCCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA--RNIEFVKSLGA--DE-VL--DYKTPD-GA----ALKSPSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~--~~~~~~~~~g~--~~-v~--~~~~~~-~~----~~~~~~~~~~  133 (240)
                      ..+..+|.|++.++|.+..|.+...|++|.+.+.+  ...+.++.+|.  ++ .+  |..++. .+    .... .-..+
T Consensus        13 ~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k-~~g~p   91 (256)
T KOG1200|consen   13 MSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEK-SLGTP   91 (256)
T ss_pred             hcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHH-hcCCC
Confidence            45678899999999999999999999999999953  45556677764  22 22  222222 11    1111 22378


Q ss_pred             cEEEeCCC
Q 045248          134 DAVIHCAT  141 (240)
Q Consensus       134 d~v~d~~g  141 (240)
                      +++++|.|
T Consensus        92 svlVncAG   99 (256)
T KOG1200|consen   92 SVLVNCAG   99 (256)
T ss_pred             cEEEEcCc
Confidence            99999998

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.57  E-value=0.26  Score=39.43  Aligned_cols=96  Identities=15%  Similarity=0.083  Sum_probs=67.3

Q ss_pred             hhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCC
Q 045248           40 SGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYK  118 (240)
Q Consensus        40 a~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~  118 (240)
                      ...||+....+..+ +..++.    -.|++++|+|.+.-+|.-+..++...|+.|+.+.+. ..++..            
T Consensus       142 ~~~PcTp~av~~ll-~~~~i~----l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~~~------------  204 (287)
T PRK14176        142 GLVPCTPHGVIRAL-EEYGVD----IEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLKKY------------  204 (287)
T ss_pred             CCCCCcHHHHHHHH-HHcCCC----CCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHHHH------------
Confidence            34577766666666 555553    389999999977779999999999999988777642 222111            


Q ss_pred             CCccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248          119 TPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                                 -...|+++-++|.+.+- --+.++++..++.+|..
T Consensus       205 -----------~~~ADIvv~AvG~p~~i-~~~~vk~gavVIDvGin  238 (287)
T PRK14176        205 -----------TLDADILVVATGVKHLI-KADMVKEGAVIFDVGIT  238 (287)
T ss_pred             -----------HhhCCEEEEccCCcccc-CHHHcCCCcEEEEeccc
Confidence                       03477888888875532 34578888888888863

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=95.57  E-value=0.049  Score=42.54  Aligned_cols=36  Identities=22%  Similarity=0.134  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGAR  101 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~  101 (240)
                      +++++||+|++|++|..+++.+...|++|+.+.++.
T Consensus         7 ~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~   42 (252)
T PRK08220          7 SGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF   42 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch
Confidence            578999999999999999999989999999998654

>PLN00016 RNA-binding protein; Provisional

Probab=95.56  E-value=0.04  Score=46.13  Aligned_cols=94  Identities=15%  Similarity=0.151  Sum_probs=57.4

Q ss_pred             CCCeEEEE----cCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH-----------HHhcCCCEEEeCCCCccccccCCC
Q 045248           66 QQKNILVT----AASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF-----------VKSLGADEVLDYKTPDGAALKSPS  129 (240)
Q Consensus        66 ~g~~vlV~----G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~-----------~~~~g~~~v~~~~~~~~~~~~~~~  129 (240)
                      ...+|||+    ||+|-+|..+++.+...|.+|+++++. .....           +...|...+.- +-.+..  ....
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~-D~~d~~--~~~~  127 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWG-DPADVK--SKVA  127 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEe-cHHHHH--hhhc
Confidence            45789999    999999999999998899999999975 32221           12233332221 111111  1112


Q ss_pred             CCcccEEEeCCCCCC--ccccccCCCCCc--EEEEeC
Q 045248          130 GRKYDAVIHCATGIP--WSTFEPNLGTNG--KVIDIT  162 (240)
Q Consensus       130 ~~~~d~v~d~~g~~~--~~~~~~~l~~~G--~iv~~g  162 (240)
                      ..++|+|+++.+...  ....++.++..|  ++|.++
T Consensus       128 ~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~S  164 (378)
T PLN00016        128 GAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCS  164 (378)
T ss_pred             cCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence            357999999987532  334445554333  677665

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=95.56  E-value=0.043  Score=45.82  Aligned_cols=36  Identities=19%  Similarity=0.111  Sum_probs=32.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ..+++|||+|++|-+|..++..+...|.+|+++++.
T Consensus        19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~   54 (370)
T PLN02695         19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWK   54 (370)
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEec
Confidence            567899999999999999999999999999999864

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.55  E-value=0.054  Score=42.25  Aligned_cols=33  Identities=21%  Similarity=0.206  Sum_probs=29.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEe
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASC   98 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~   98 (240)
                      ++++++|+||+|++|..+++.+...|++|+...
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~   35 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAEEGYDIAVNY   35 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEc
Confidence            567999999999999999999999999887643

>PRK06172 short chain dehydrogenase; Provisional

Probab=95.52  E-value=0.039  Score=43.18  Aligned_cols=77  Identities=17%  Similarity=0.174  Sum_probs=48.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHH----HHHhcCCC-EEE--eCCCCc--cccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIE----FVKSLGAD-EVL--DYKTPD--GAALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~----~~~~~g~~-~v~--~~~~~~--~~~~~~--~~~~~~  133 (240)
                      .+++++|.|++|++|..+++.+...|++|+.+.++ ++.+    .+++.+.. ..+  |..+..  ...++.  ..-.++
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~i   85 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGRL   85 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence            57899999999999999998888899999999865 3332    22334432 222  222211  111111  011368


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.+.|.
T Consensus        86 d~li~~ag~   94 (253)
T PRK06172         86 DYAFNNAGI   94 (253)
T ss_pred             CEEEECCCC
Confidence            999999884

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=95.52  E-value=0.036  Score=43.25  Aligned_cols=36  Identities=25%  Similarity=0.193  Sum_probs=32.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      -++++++|.|++|++|..+++.+...|++|+.++++
T Consensus        10 ~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~   45 (247)
T PRK08945         10 LKDRIILVTGAGDGIGREAALTYARHGATVILLGRT   45 (247)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCC
Confidence            478899999999999999998888889999998864

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=95.51  E-value=0.039  Score=43.22  Aligned_cols=77  Identities=18%  Similarity=0.177  Sum_probs=48.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCC-EEE--eCCCCc--cccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGAD-EVL--DYKTPD--GAALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~-~v~--~~~~~~--~~~~~~--~~~~~~  133 (240)
                      .++++||+||+|++|..+++.+...|++|+.+.++ ++.+.+    ++.+.. ..+  |-.+.+  ...+..  ....++
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   87 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGPI   87 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCCC
Confidence            57899999999999999999888899999998864 433222    233322 122  222221  111111  112468


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.+.|.
T Consensus        88 d~vi~~ag~   96 (254)
T PRK08085         88 DVLINNAGI   96 (254)
T ss_pred             CEEEECCCc
Confidence            999999983

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.49  E-value=0.053  Score=42.10  Aligned_cols=35  Identities=29%  Similarity=0.298  Sum_probs=30.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEE-eCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTAS-CGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~-~~~  100 (240)
                      .++++||.|++|++|..++..+...|++|+.+ .++
T Consensus         4 ~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~   39 (247)
T PRK05565          4 MGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDIN   39 (247)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            45789999999999999998888889998888 654

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.49  E-value=0.094  Score=41.52  Aligned_cols=35  Identities=17%  Similarity=0.149  Sum_probs=30.0

Q ss_pred             CCCeEEEEcCCc--hHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASG--GVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g--~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .+++++|+||++  ++|.++++.+...|++|+.+.++
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~   41 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN   41 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc
Confidence            578999999875  89999998888899999887764

>PRK06398 aldose dehydrogenase; Validated

Probab=95.47  E-value=0.034  Score=43.78  Aligned_cols=35  Identities=26%  Similarity=0.224  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .++++||+|++|++|..+++.+...|++|+.+.++
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~   39 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIK   39 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            57899999999999999999999999999998865

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=95.47  E-value=0.063  Score=43.02  Aligned_cols=73  Identities=10%  Similarity=-0.006  Sum_probs=46.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHHHH-HhcCCC-EEEeCCCCccccccCCCCCcccEEEeCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNIEFV-KSLGAD-EVLDYKTPDGAALKSPSGRKYDAVIHCAT  141 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~~~-~~~g~~-~v~~~~~~~~~~~~~~~~~~~d~v~d~~g  141 (240)
                      ++++++|+| +|+.+.+++..+...|+ +|+++.++ ++.+.+ +.++.. .+......  ..... .-..+|+||+|++
T Consensus       124 ~~k~vlvlG-aGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~--~~~~~-~~~~~DiVInaTp  199 (282)
T TIGR01809       124 AGFRGLVIG-AGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGD--SGGLA-IEKAAEVLVSTVP  199 (282)
T ss_pred             CCceEEEEc-CcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccch--hhhhh-cccCCCEEEECCC
Confidence            578999999 89999999999999998 78888775 554443 444321 11111100  00000 1145899999987


Q ss_pred             C
Q 045248          142 G  142 (240)
Q Consensus       142 ~  142 (240)
                      .
T Consensus       200 ~  200 (282)
T TIGR01809       200 A  200 (282)
T ss_pred             C
Confidence            4

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.46  E-value=0.047  Score=42.62  Aligned_cols=34  Identities=18%  Similarity=0.245  Sum_probs=29.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      .++++||.||+|++|..+++-+...|++|+.+.+
T Consensus         5 ~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~   38 (252)
T PRK06077          5 KDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAK   38 (252)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence            4689999999999999999888899998877664

>PRK07985 oxidoreductase; Provisional

Probab=95.46  E-value=0.038  Score=44.53  Aligned_cols=34  Identities=24%  Similarity=0.269  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      .+++++|+||+|++|..+++.+...|++|+.+.+
T Consensus        48 ~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~   81 (294)
T PRK07985         48 KDRKALVTGGDSGIGRAAAIAYAREGADVAISYL   81 (294)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecC
Confidence            5689999999999999999999999999988764

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.46  E-value=0.28  Score=37.68  Aligned_cols=33  Identities=18%  Similarity=0.120  Sum_probs=30.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      .+.+|+|.| .|.+|..+++++...|+++++++.
T Consensus        22 ~g~~vaIqG-fGnVG~~~a~~L~~~G~~vV~vsD   54 (217)
T cd05211          22 EGLTVAVQG-LGNVGWGLAKKLAEEGGKVLAVSD   54 (217)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEEc
Confidence            789999999 999999999999999998877774

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK12746 short chain dehydrogenase; Provisional

Probab=95.46  E-value=0.056  Score=42.29  Aligned_cols=33  Identities=27%  Similarity=0.224  Sum_probs=28.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEe
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASC   98 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~   98 (240)
                      .+.+++|+|++|++|..+++.+...|++|+...
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~   37 (254)
T PRK12746          5 DGKVALVTGASRGIGRAIAMRLANDGALVAIHY   37 (254)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEc
Confidence            457999999999999999998888999887654

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=95.44  E-value=0.16  Score=42.33  Aligned_cols=60  Identities=23%  Similarity=0.273  Sum_probs=43.7

Q ss_pred             CChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           34 VSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        34 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ...+++....+.+.+- .++ +..+..    =+|.+|.|.| .|.+|..+++.+...|++|++++.+
T Consensus       180 ~~r~~aTg~Gv~~~~~-~a~-~~~g~~----l~G~rVaVQG-~GNVg~~aa~~l~~~GAkvva~sds  239 (411)
T COG0334         180 LGRSEATGYGVFYAIR-EAL-KALGDD----LEGARVAVQG-FGNVGQYAAEKLHELGAKVVAVSDS  239 (411)
T ss_pred             CCCCcccceehHHHHH-HHH-HHcCCC----cCCCEEEEEC-ccHHHHHHHHHHHHcCCEEEEEEcC
Confidence            3345555555554333 444 444431    1899999999 9999999999999889999999843

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.43  E-value=0.074  Score=46.05  Aligned_cols=68  Identities=19%  Similarity=0.119  Sum_probs=47.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcc--c----HHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGAR--N----IEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHC  139 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~--~----~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~  139 (240)
                      .+++|+|+| .|++|+.++.+++..|++|++++..+  .    .+.+++.|.........   .     ...++|+|+-+
T Consensus        15 ~~~~v~viG-~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~---~-----~~~~~D~Vv~s   85 (480)
T PRK01438         15 QGLRVVVAG-LGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGP---T-----LPEDTDLVVTS   85 (480)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCc---c-----ccCCCCEEEEC
Confidence            577999999 89999999999999999999887431  1    24456677643322111   1     12458999988


Q ss_pred             CCC
Q 045248          140 ATG  142 (240)
Q Consensus       140 ~g~  142 (240)
                      .|-
T Consensus        86 ~Gi   88 (480)
T PRK01438         86 PGW   88 (480)
T ss_pred             CCc
Confidence            884

>PRK09242 tropinone reductase; Provisional

Probab=95.42  E-value=0.044  Score=43.05  Aligned_cols=35  Identities=20%  Similarity=0.122  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .+++++|+|++|++|..+++.+...|++|+.+.++
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~   42 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARD   42 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence            57899999999999999999999999999999864

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=95.42  E-value=0.12  Score=43.49  Aligned_cols=71  Identities=23%  Similarity=0.312  Sum_probs=50.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-cc-HHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RN-IEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~-~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      .+.++||+| +|-+|..++..+...|. +|+..-++ ++ .+.++++|+. ++..++.. ..+     ..+|+||-++|.
T Consensus       177 ~~~~vlvIG-AGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~-~~~l~el~-~~l-----~~~DvVissTsa  248 (414)
T COG0373         177 KDKKVLVIG-AGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAE-AVALEELL-EAL-----AEADVVISSTSA  248 (414)
T ss_pred             ccCeEEEEc-ccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCe-eecHHHHH-Hhh-----hhCCEEEEecCC
Confidence            789999999 89999999999999998 55555565 44 5567899953 33332211 111     358999999987


Q ss_pred             CC
Q 045248          143 IP  144 (240)
Q Consensus       143 ~~  144 (240)
                      +.
T Consensus       249 ~~  250 (414)
T COG0373         249 PH  250 (414)
T ss_pred             Cc
Confidence            54

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=95.40  E-value=0.04  Score=44.59  Aligned_cols=72  Identities=21%  Similarity=0.200  Sum_probs=42.8

Q ss_pred             EEEEcCCchHHHHHHHHHHhCCC-EEEEEeCcccHHHHHhcCCCEEEeCC-CCc-cccccCCCCCcccEEEeCCC
Q 045248           70 ILVTAASGGVGHYAVQLAKLGNT-HVTASCGARNIEFVKSLGADEVLDYK-TPD-GAALKSPSGRKYDAVIHCAT  141 (240)
Q Consensus        70 vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~g~~~v~~~~-~~~-~~~~~~~~~~~~d~v~d~~g  141 (240)
                      |||+||+|.+|..+++.+...|. .|+++.+..+.....+++...+.+.. +.. ...+....-.++|+|+.+++
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~vvh~A~   75 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGHKFLNLADLVIADYIDKEDFLDRLEKGAFGKIEAIFHQGA   75 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCchhhhhhhheeeeccCcchhHHHHHHhhccCCCCEEEECcc
Confidence            68999999999999999999998 78777654322222223222222111 111 11111101157999999987

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PRK07024 short chain dehydrogenase; Provisional

Probab=95.39  E-value=0.046  Score=42.97  Aligned_cols=39  Identities=13%  Similarity=0.186  Sum_probs=32.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF  105 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~  105 (240)
                      +++++|+|++|++|..+++.+...|++|+.+.+. ++.+.
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~   41 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQA   41 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            3689999999999999998888889999998864 44433

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.39  E-value=0.29  Score=38.99  Aligned_cols=95  Identities=22%  Similarity=0.208  Sum_probs=67.4

Q ss_pred             hhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCC
Q 045248           41 GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKT  119 (240)
Q Consensus        41 ~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~  119 (240)
                      ..||+....+..+ +..++.    -.|++++|+|.+.-+|.=+..++...|+.|+..-+. ..++..             
T Consensus       137 ~~PcTp~av~~lL-~~~~i~----l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~~l~~~-------------  198 (278)
T PRK14172        137 FLPCTPNSVITLI-KSLNID----IEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTKNLKEV-------------  198 (278)
T ss_pred             CcCCCHHHHHHHH-HHhCCC----CCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHH-------------
Confidence            4577766666666 555553    389999999999999999999999999988776642 222211             


Q ss_pred             CccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248          120 PDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       120 ~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                           .     +..|+++-++|.+.+ ---+.+++|..++.+|..
T Consensus       199 -----~-----~~ADIvIsAvGkp~~-i~~~~ik~gavVIDvGin  232 (278)
T PRK14172        199 -----C-----KKADILVVAIGRPKF-IDEEYVKEGAIVIDVGTS  232 (278)
T ss_pred             -----H-----hhCCEEEEcCCCcCc-cCHHHcCCCcEEEEeecc
Confidence                 0     237788888887653 224568888888888854

>PLN03139 formate dehydrogenase; Provisional

Probab=95.38  E-value=0.12  Score=43.23  Aligned_cols=89  Identities=18%  Similarity=0.117  Sum_probs=60.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC-
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI-  143 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-  143 (240)
                      .|++|.|+| .|.+|...++.++.+|++|++.++. ...+..++.|+..+   .+. ...+     ...|+|+-++... 
T Consensus       198 ~gktVGIVG-~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~---~~l-~ell-----~~sDvV~l~lPlt~  267 (386)
T PLN03139        198 EGKTVGTVG-AGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFE---EDL-DAML-----PKCDVVVINTPLTE  267 (386)
T ss_pred             CCCEEEEEe-ecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceec---CCH-HHHH-----hhCCEEEEeCCCCH
Confidence            688999999 9999999999999999999988764 34444455554321   110 1111     2368888877631 


Q ss_pred             -C----ccccccCCCCCcEEEEeCCC
Q 045248          144 -P----WSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       144 -~----~~~~~~~l~~~G~iv~~g~~  164 (240)
                       +    -...+..++++..+|.++-.
T Consensus       268 ~T~~li~~~~l~~mk~ga~lIN~aRG  293 (386)
T PLN03139        268 KTRGMFNKERIAKMKKGVLIVNNARG  293 (386)
T ss_pred             HHHHHhCHHHHhhCCCCeEEEECCCC
Confidence             1    12466788898888888753

>PRK12827 short chain dehydrogenase; Provisional

Probab=95.37  E-value=0.075  Score=41.29  Aligned_cols=34  Identities=21%  Similarity=0.270  Sum_probs=29.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      .+.+++|+||+|++|..+++.+...|++|+.+.+
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~   38 (249)
T PRK12827          5 DSRRVLITGGSGGLGRAIAVRLAADGADVIVLDI   38 (249)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcC
Confidence            4678999999999999999888899999888664

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.37  E-value=0.075  Score=41.58  Aligned_cols=33  Identities=15%  Similarity=0.113  Sum_probs=29.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ++++|+|++|++|..+++.+...|++|+.+.+.
T Consensus         3 k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~   35 (256)
T PRK12745          3 PVALVTGGRRGIGLGIARALAAAGFDLAINDRP   35 (256)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCEEEEEecC
Confidence            579999999999999999999999999988853

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.37  E-value=0.5  Score=38.64  Aligned_cols=33  Identities=27%  Similarity=0.076  Sum_probs=29.2

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      -++|.|+| +|.+|...++.+...|++|...+.+
T Consensus         7 i~~VaVIG-aG~MG~giA~~~a~aG~~V~l~D~~   39 (321)
T PRK07066          7 IKTFAAIG-SGVIGSGWVARALAHGLDVVAWDPA   39 (321)
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            46899999 8999999999988999999999854

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=95.36  E-value=0.029  Score=43.26  Aligned_cols=73  Identities=23%  Similarity=0.201  Sum_probs=45.7

Q ss_pred             EEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH-hcCCCE-EEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           70 ILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK-SLGADE-VLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        70 vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~-~~g~~~-v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      |||.||+|-+|..++..+...|..|+.+.+. .+..... +..... ..|..+.+ ...+......+|.|+.+++..
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-~~~~~~~~~~~d~vi~~a~~~   76 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKKLNVEFVIGDLTDKE-QLEKLLEKANIDVVIHLAAFS   76 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHHTTEEEEESETTSHH-HHHHHHHHHTESEEEEEBSSS
T ss_pred             EEEEccCCHHHHHHHHHHHHcCCccccccccccccccccccceEEEEEeeccccc-cccccccccCceEEEEeeccc
Confidence            7999999999999999999999998888864 3332222 222211 11222211 111112223689999999863

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PRK06523 short chain dehydrogenase; Provisional

Probab=95.36  E-value=0.035  Score=43.63  Aligned_cols=35  Identities=23%  Similarity=0.285  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      +++++||+|++|++|..+++.+...|++|+.+.++
T Consensus         8 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~   42 (260)
T PRK06523          8 AGKRALVTGGTKGIGAATVARLLEAGARVVTTARS   42 (260)
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCC
Confidence            67899999999999999999999999999999875

>PRK11579 putative oxidoreductase; Provisional

Probab=95.35  E-value=0.35  Score=39.96  Aligned_cols=132  Identities=11%  Similarity=0.034  Sum_probs=74.6

Q ss_pred             CeEEEEcCCchHHH-HHHHHH-HhCCCEEEEEeCcccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC-
Q 045248           68 KNILVTAASGGVGH-YAVQLA-KLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP-  144 (240)
Q Consensus        68 ~~vlV~G~~g~vG~-~~~~~a-~~~g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~-  144 (240)
                      -+|.|+| +|.+|. ...... +.-+++++++++....+..++++...++  .+  ...+  .....+|+|+-++.... 
T Consensus         5 irvgiiG-~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~--~~--~~el--l~~~~vD~V~I~tp~~~H   77 (346)
T PRK11579          5 IRVGLIG-YGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVV--SE--PQHL--FNDPNIDLIVIPTPNDTH   77 (346)
T ss_pred             ceEEEEC-CCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCcee--CC--HHHH--hcCCCCCEEEEcCCcHHH
Confidence            4799999 899996 344444 4456799888864322222344322222  11  1111  12357999999998755 


Q ss_pred             ccccccCCCCCcEEEEeCCCchHH---HHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCce
Q 045248          145 WSTFEPNLGTNGKVIDITPGPSAM---LTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKL  207 (240)
Q Consensus       145 ~~~~~~~l~~~G~iv~~g~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i  207 (240)
                      ...+..+++. |+-|++..+-...   ..........++..+...+.......++.+.+++++|.+
T Consensus        78 ~~~~~~al~a-GkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~v~~~~R~~p~~~~~k~~i~~g~i  142 (346)
T PRK11579         78 FPLAKAALEA-GKHVVVDKPFTVTLSQARELDALAKSAGRVLSVFHNRRWDSDFLTLKALLAEGVL  142 (346)
T ss_pred             HHHHHHHHHC-CCeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEeeccCCHHHHHHHHHHhcCCC
Confidence            6677777766 5556676432211   111122222334444333333455678889999999865

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=95.35  E-value=0.068  Score=43.74  Aligned_cols=76  Identities=18%  Similarity=0.139  Sum_probs=44.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCC--CEEEEEeCc-ccHHHH-HhcCC--CEEEeCCCCccccccCCCCCcccEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGN--THVTASCGA-RNIEFV-KSLGA--DEVLDYKTPDGAALKSPSGRKYDAVIHC  139 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g--~~v~~~~~~-~~~~~~-~~~g~--~~v~~~~~~~~~~~~~~~~~~~d~v~d~  139 (240)
                      .++++||+||+|.+|..+++.+...|  .+|++++++ .+...+ +.+..  ...+..+-.+...+...- .++|+||.+
T Consensus         3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~-~~iD~Vih~   81 (324)
T TIGR03589         3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRAL-RGVDYVVHA   81 (324)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHH-hcCCEEEEC
Confidence            46899999999999999988777665  588888764 333222 22321  112211111111111111 258999999


Q ss_pred             CCC
Q 045248          140 ATG  142 (240)
Q Consensus       140 ~g~  142 (240)
                      +|.
T Consensus        82 Ag~   84 (324)
T TIGR03589        82 AAL   84 (324)
T ss_pred             ccc
Confidence            873

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=95.34  E-value=0.046  Score=42.58  Aligned_cols=35  Identities=20%  Similarity=0.164  Sum_probs=31.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .+++++|+||+|++|..++..+...|++|+++.++
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~   39 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGAEVIVVDIC   39 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            56899999999999999998888889999999875

>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]

Probab=95.33  E-value=0.11  Score=42.08  Aligned_cols=52  Identities=21%  Similarity=0.285  Sum_probs=45.9

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc----ccHHHHHhcCCCEEEe
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA----RNIEFVKSLGADEVLD  116 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~----~~~~~~~~~g~~~v~~  116 (240)
                      .||.++||-.-+|++|..+..++...|++++.+.++    +|...++.+|+.-|..
T Consensus       101 ~pg~stliEpTSGNtGigLA~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~t  156 (362)
T KOG1252|consen  101 TPGKSTLIEPTSGNTGIGLAYMAALRGYKCIITMPEKMSKEKRILLRALGAEIILT  156 (362)
T ss_pred             cCCceEEEecCCCchHHHHHHHHHHcCceEEEEechhhhHHHHHHHHHcCCEEEec
Confidence            899999999999999999999999999999988852    6888899999976653

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=95.32  E-value=0.043  Score=42.88  Aligned_cols=40  Identities=23%  Similarity=0.189  Sum_probs=32.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV  106 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~  106 (240)
                      ++++||+|++|++|..++..+...|++|++++++ ++.+.+
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~   41 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAA   41 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            3579999999999999998888899999999875 444333

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=95.31  E-value=0.087  Score=41.01  Aligned_cols=34  Identities=18%  Similarity=0.216  Sum_probs=29.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      ++++++|+|++|++|..++..+...|++|+++.+
T Consensus         5 ~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~   38 (247)
T PRK12935          5 NGKVAIVTGGAKGIGKAITVALAQEGAKVVINYN   38 (247)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcC
Confidence            5789999999999999999988889998887653

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.29  E-value=0.084  Score=41.67  Aligned_cols=77  Identities=18%  Similarity=0.187  Sum_probs=47.1

Q ss_pred             CCCeEEEEcC--CchHHHHHHHHHHhCCCEEEEEeCc----ccHHHH-HhcCCCEEE--eCCCCc--cccccCC--CCCc
Q 045248           66 QQKNILVTAA--SGGVGHYAVQLAKLGNTHVTASCGA----RNIEFV-KSLGADEVL--DYKTPD--GAALKSP--SGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~--~g~vG~~~~~~a~~~g~~v~~~~~~----~~~~~~-~~~g~~~v~--~~~~~~--~~~~~~~--~~~~  132 (240)
                      .+++++|+||  ++++|.++++.+...|++|+.+.+.    ++.+.+ ++++....+  |..+++  ...++..  ..++
T Consensus         5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   84 (260)
T PRK06997          5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHWDG   84 (260)
T ss_pred             CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHhCC
Confidence            5789999996  5799999998888899999887532    222222 344532222  222222  1111111  1247


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.+.|.
T Consensus        85 iD~lvnnAG~   94 (260)
T PRK06997         85 LDGLVHSIGF   94 (260)
T ss_pred             CcEEEEcccc
Confidence            9999999873

>PRK08618 ornithine cyclodeaminase; Validated

Probab=95.29  E-value=0.28  Score=40.24  Aligned_cols=91  Identities=9%  Similarity=0.141  Sum_probs=57.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHH-HhCCC-EEEEEeCc-ccHH-HHHh----cCCCEEEeCCCCccccccCCCCCcccEE
Q 045248           65 GQQKNILVTAASGGVGHYAVQLA-KLGNT-HVTASCGA-RNIE-FVKS----LGADEVLDYKTPDGAALKSPSGRKYDAV  136 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a-~~~g~-~v~~~~~~-~~~~-~~~~----~g~~~v~~~~~~~~~~~~~~~~~~~d~v  136 (240)
                      +..++++|+| +|+.|...+..+ ...++ +|.+..++ ++.+ ++++    ++.. +..+.+. ...+     ...|+|
T Consensus       125 ~~~~~v~iiG-aG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~-~~~~~~~-~~~~-----~~aDiV  196 (325)
T PRK08618        125 EDAKTLCLIG-TGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTE-IYVVNSA-DEAI-----EEADII  196 (325)
T ss_pred             CCCcEEEEEC-CcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCc-EEEeCCH-HHHH-----hcCCEE
Confidence            4678899999 999998777554 46788 55555554 4433 3333    3432 2212211 1112     358999


Q ss_pred             EeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248          137 IHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       137 ~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      +.|+++...... +.+++|-++..+|..
T Consensus       197 i~aT~s~~p~i~-~~l~~G~hV~~iGs~  223 (325)
T PRK08618        197 VTVTNAKTPVFS-EKLKKGVHINAVGSF  223 (325)
T ss_pred             EEccCCCCcchH-HhcCCCcEEEecCCC
Confidence            999986442223 888999899999854

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.29  E-value=0.044  Score=42.39  Aligned_cols=76  Identities=17%  Similarity=0.163  Sum_probs=57.1

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH-HH-hcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCCc
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF-VK-SLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPW  145 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~-~~-~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~  145 (240)
                      +++|.| +|.+|...++.+...|..|+.+..+ ++.+. +. +... +++..+..+...+++.+-..+|+++=++|....
T Consensus         2 ~iiIiG-~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~-~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~   79 (225)
T COG0569           2 KIIIIG-AGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDT-HVVIGDATDEDVLEEAGIDDADAVVAATGNDEV   79 (225)
T ss_pred             EEEEEC-CcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcce-EEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHH
Confidence            578999 9999999999999999999999975 56555 33 3443 455444444556666677889999999997553


Q ss_pred             c
Q 045248          146 S  146 (240)
Q Consensus       146 ~  146 (240)
                      .
T Consensus        80 N   80 (225)
T COG0569          80 N   80 (225)
T ss_pred             H
Confidence            3

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=95.28  E-value=0.027  Score=45.03  Aligned_cols=66  Identities=24%  Similarity=0.140  Sum_probs=42.5

Q ss_pred             EEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           70 ILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        70 vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      |||+||+|-+|..+++.+...|++|++++++ .+.+.....+   +.+....  ...+  .-.++|+|+.+++.
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~---~~~~~~~--~~~~--~~~~~D~Vvh~a~~   67 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEG---YKPWAPL--AESE--ALEGADAVINLAGE   67 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCccccee---eeccccc--chhh--hcCCCCEEEECCCC
Confidence            5899999999999999988899999999974 3322221111   1111111  1111  11469999999974

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=95.28  E-value=0.088  Score=38.46  Aligned_cols=107  Identities=18%  Similarity=0.138  Sum_probs=63.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC--
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP--  144 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~--  144 (240)
                      .+|.++| .|.+|...++-+...|++|.+..+. ++.+.+.+.|+... +..   ....     ...|+|+-++.+..  
T Consensus         2 ~~Ig~IG-lG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~-~s~---~e~~-----~~~dvvi~~v~~~~~v   71 (163)
T PF03446_consen    2 MKIGFIG-LGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVA-DSP---AEAA-----EQADVVILCVPDDDAV   71 (163)
T ss_dssp             BEEEEE---SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEE-SSH---HHHH-----HHBSEEEE-SSSHHHH
T ss_pred             CEEEEEc-hHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhh-hhh---hhHh-----hcccceEeecccchhh
Confidence            4688999 9999999999999999999999865 77777777774322 111   1111     23589999887522  


Q ss_pred             ---ccc--cccCCCCCcEEEEeCCCchHHHHHHHhhheeccceee
Q 045248          145 ---WST--FEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLV  184 (240)
Q Consensus       145 ---~~~--~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~  184 (240)
                         +..  .+..++++..++.++.............+..++..+.
T Consensus        72 ~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~v  116 (163)
T PF03446_consen   72 EAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYV  116 (163)
T ss_dssp             HHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEE
T ss_pred             hhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceee
Confidence               223  5666777778888876554433333333333444333

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=95.28  E-value=0.056  Score=39.25  Aligned_cols=75  Identities=21%  Similarity=0.279  Sum_probs=45.1

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc---ccHHHH----HhcCCC-EEEeC--CCCc--cccccC--CCCCc
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA---RNIEFV----KSLGAD-EVLDY--KTPD--GAALKS--PSGRK  132 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~---~~~~~~----~~~g~~-~v~~~--~~~~--~~~~~~--~~~~~  132 (240)
                      ++++|+||++++|..+++.+-..|. +|+.+.++   ++.+.+    +..+.. .++..  .+..  ...++.  .....
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP   80 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4789999999999998888887777 66666655   333322    334532 22221  1111  111111  23457


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|++|.+.|.
T Consensus        81 ld~li~~ag~   90 (167)
T PF00106_consen   81 LDILINNAGI   90 (167)
T ss_dssp             ESEEEEECSC
T ss_pred             cccccccccc
Confidence            9999999985

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PLN02214 cinnamoyl-CoA reductase

Probab=95.27  E-value=0.083  Score=43.59  Aligned_cols=36  Identities=19%  Similarity=0.224  Sum_probs=32.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .++++|||+||+|.+|..+++.+...|.+|+++.+.
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~   43 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRN   43 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            367899999999999999999999999999998864

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=95.25  E-value=0.049  Score=42.96  Aligned_cols=94  Identities=18%  Similarity=0.205  Sum_probs=55.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHh----cCCCEEEeCCCCccccccCCCCCcccEEEeCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKS----LGADEVLDYKTPDGAALKSPSGRKYDAVIHCA  140 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~  140 (240)
                      ++.+||=+|  +|.|..+..+++. |.+|++++.+ +..+.+++    .|...-+.....+...........||+|+-..
T Consensus        44 ~~~~vLDiG--cG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~  120 (255)
T PRK11036         44 RPLRVLDAG--GGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA  120 (255)
T ss_pred             CCCEEEEeC--CCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence            557888887  4567777777774 8899999954 55555543    33211111111111111112235799998543


Q ss_pred             C-----C--CCccccccCCCCCcEEEEeC
Q 045248          141 T-----G--IPWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       141 g-----~--~~~~~~~~~l~~~G~iv~~g  162 (240)
                      .     .  ..+..+.+.|+|+|.++.+-
T Consensus       121 vl~~~~~~~~~l~~~~~~LkpgG~l~i~~  149 (255)
T PRK11036        121 VLEWVADPKSVLQTLWSVLRPGGALSLMF  149 (255)
T ss_pred             HHHhhCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            2     2  12678888999999987654

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.24  E-value=0.34  Score=38.69  Aligned_cols=95  Identities=18%  Similarity=0.161  Sum_probs=68.6

Q ss_pred             hhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCC
Q 045248           41 GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKT  119 (240)
Q Consensus        41 ~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~  119 (240)
                      .+||+....+..+ +..++.    -.|++++|+|.+.-+|.=+..++...|+.|+.+.+. ..++..             
T Consensus       138 ~~PcTp~avi~ll-~~y~i~----l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~~l~~~-------------  199 (284)
T PRK14177        138 YLPCTPYGMVLLL-KEYGID----VTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQNLPSI-------------  199 (284)
T ss_pred             CCCCCHHHHHHHH-HHhCCC----CCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHH-------------
Confidence            4577766666666 555553    389999999999999999999999999988877642 322211             


Q ss_pred             CccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248          120 PDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       120 ~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                           .     +..|+++-++|.+.+ -.-+.+++|..++.+|..
T Consensus       200 -----~-----~~ADIvIsAvGk~~~-i~~~~ik~gavVIDvGin  233 (284)
T PRK14177        200 -----V-----RQADIIVGAVGKPEF-IKADWISEGAVLLDAGYN  233 (284)
T ss_pred             -----H-----hhCCEEEEeCCCcCc-cCHHHcCCCCEEEEecCc
Confidence                 0     347888888887654 225678899888888864

>PRK05855 short chain dehydrogenase; Validated

Probab=95.23  E-value=0.049  Score=48.07  Aligned_cols=77  Identities=23%  Similarity=0.150  Sum_probs=49.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCC-EEE--eCCCCc--cccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGAD-EVL--DYKTPD--GAALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~-~v~--~~~~~~--~~~~~~--~~~~~~  133 (240)
                      .+.++||+||+|++|..+++-+...|++|+.+.++ ++.+.+    ++.|.. ..+  |..+..  ...+..  ...+++
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i  393 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHGVP  393 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            56789999999999999999888999999998865 343332    333432 222  222221  111111  112469


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.++|.
T Consensus       394 d~lv~~Ag~  402 (582)
T PRK05855        394 DIVVNNAGI  402 (582)
T ss_pred             cEEEECCcc
Confidence            999999984

>PRK07856 short chain dehydrogenase; Provisional

Probab=95.23  E-value=0.043  Score=42.94  Aligned_cols=35  Identities=17%  Similarity=0.199  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .+++++|+||+|++|..+++.+...|++|+.++++
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~   39 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRR   39 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999999999999999999999999999875

>PRK01581 speE spermidine synthase; Validated

Probab=95.22  E-value=0.077  Score=43.80  Aligned_cols=96  Identities=17%  Similarity=0.170  Sum_probs=55.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHHHHHhcCC-C----EEEeCC-----CCcccc-ccCCCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNIEFVKSLGA-D----EVLDYK-----TPDGAA-LKSPSGR  131 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~-~----~v~~~~-----~~~~~~-~~~~~~~  131 (240)
                      ...++|||+|  ||.|..+..+++..+. +|++++-+ +-.+.++++.. .    ..++..     -.+... +. ...+
T Consensus       149 ~~PkrVLIIG--gGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~-~~~~  225 (374)
T PRK01581        149 IDPKRVLILG--GGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLS-SPSS  225 (374)
T ss_pred             CCCCEEEEEC--CCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHH-hcCC
Confidence            3457999999  4466677777776654 88888854 55677765210 0    001000     011111 11 2345


Q ss_pred             cccEEEeCCCCC------------CccccccCCCCCcEEEEeCC
Q 045248          132 KYDAVIHCATGI------------PWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       132 ~~d~v~d~~g~~------------~~~~~~~~l~~~G~iv~~g~  163 (240)
                      .||+|+--+..+            .+..+.+.|+++|.++.-..
T Consensus       226 ~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~  269 (374)
T PRK01581        226 LYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN  269 (374)
T ss_pred             CccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence            799986544221            25567889999999876643

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=95.22  E-value=0.057  Score=42.34  Aligned_cols=77  Identities=19%  Similarity=0.274  Sum_probs=49.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH----HHhcCCC-EEE--eCCCCc--cccccCC--CCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF----VKSLGAD-EVL--DYKTPD--GAALKSP--SGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~----~~~~g~~-~v~--~~~~~~--~~~~~~~--~~~~~  133 (240)
                      .+++++|.|++|++|..+++.+...|++|+.+.++ ++.+.    +++.+.. ..+  |..+..  ...++..  .-.++
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   89 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGRL   89 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence            68899999999999999998888899999999874 33322    2334422 222  222221  1111111  11368


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |.++.+.|.
T Consensus        90 d~vi~~ag~   98 (256)
T PRK06124         90 DILVNNVGA   98 (256)
T ss_pred             CEEEECCCC
Confidence            999999984

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=95.20  E-value=0.16  Score=42.37  Aligned_cols=78  Identities=15%  Similarity=0.101  Sum_probs=47.8

Q ss_pred             CCCCeEEEEcCCchHHHH--HHHHHHhCCCEEEEEeCc-c--c--------------HHHHHhcCCC-EEEeCCCCcc--
Q 045248           65 GQQKNILVTAASGGVGHY--AVQLAKLGNTHVTASCGA-R--N--------------IEFVKSLGAD-EVLDYKTPDG--  122 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~--~~~~a~~~g~~v~~~~~~-~--~--------------~~~~~~~g~~-~v~~~~~~~~--  122 (240)
                      ..++++||+|+++++|++  +.+.+ ..|++++++... +  +              .+.+++.|.. ..+.-+-.+.  
T Consensus        39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~  117 (398)
T PRK13656         39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEI  117 (398)
T ss_pred             CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence            456899999999999999  56666 899988887732 1  1              2234556643 2332222221  


Q ss_pred             --ccccC--CCCCcccEEEeCCCCC
Q 045248          123 --AALKS--PSGRKYDAVIHCATGI  143 (240)
Q Consensus       123 --~~~~~--~~~~~~d~v~d~~g~~  143 (240)
                        ..++.  ..-+++|+++.+++.+
T Consensus       118 v~~lie~I~e~~G~IDiLVnSaA~~  142 (398)
T PRK13656        118 KQKVIELIKQDLGQVDLVVYSLASP  142 (398)
T ss_pred             HHHHHHHHHHhcCCCCEEEECCccC
Confidence              11111  1124699999999854

>PRK06487 glycerate dehydrogenase; Provisional

Probab=95.20  E-value=0.032  Score=45.54  Aligned_cols=34  Identities=18%  Similarity=0.127  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .|+++.|+| .|.+|...+++++.+|++|++..+.
T Consensus       147 ~gktvgIiG-~G~IG~~vA~~l~~fgm~V~~~~~~  180 (317)
T PRK06487        147 EGKTLGLLG-HGELGGAVARLAEAFGMRVLIGQLP  180 (317)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHhhCCCEEEEECCC
Confidence            678999999 9999999999999999999988754

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=95.19  E-value=0.039  Score=42.08  Aligned_cols=93  Identities=15%  Similarity=0.173  Sum_probs=58.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcc--cHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGAR--NIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~--~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      .+++|||+| +|.+|.-=+.++...|++|+++..+.  ....+.+.+....+. ...+....     .++++|+-+++.+
T Consensus        11 ~~k~VlvvG-gG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~~~~~-----~~~~lviaAt~d~   83 (210)
T COG1648          11 EGKKVLVVG-GGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIE-REFDAEDL-----DDAFLVIAATDDE   83 (210)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhh-cccChhhh-----cCceEEEEeCCCH
Confidence            788999999 89999999999999999999998653  333333333211111 11111111     2388888888875


Q ss_pred             Cc-cccccCCCCCcEEEEeCCCc
Q 045248          144 PW-STFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus       144 ~~-~~~~~~l~~~G~iv~~g~~~  165 (240)
                      .+ ....+..++.++.|..-..+
T Consensus        84 ~ln~~i~~~a~~~~i~vNv~D~p  106 (210)
T COG1648          84 ELNERIAKAARERRILVNVVDDP  106 (210)
T ss_pred             HHHHHHHHHHHHhCCceeccCCc
Confidence            53 34555566667776665443

>PRK00811 spermidine synthase; Provisional

Probab=95.18  E-value=0.059  Score=43.22  Aligned_cols=95  Identities=19%  Similarity=0.269  Sum_probs=54.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHHHHHhc----C--C--CEEEeCCCCcc-ccccCCCCCcc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNIEFVKSL----G--A--DEVLDYKTPDG-AALKSPSGRKY  133 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~----g--~--~~v~~~~~~~~-~~~~~~~~~~~  133 (240)
                      ++.++||++|  ||.|..+..+++..+. +|++++-+ +-.+.+++.    +  .  +.-+.....+. ..+.. ..+.|
T Consensus        75 ~~p~~VL~iG--~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-~~~~y  151 (283)
T PRK00811         75 PNPKRVLIIG--GGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE-TENSF  151 (283)
T ss_pred             CCCCEEEEEe--cCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh-CCCcc
Confidence            4567999999  3447677777887676 88888854 545555432    1  1  00000001111 11111 34679


Q ss_pred             cEEEeCCCCC-----------CccccccCCCCCcEEEEeC
Q 045248          134 DAVIHCATGI-----------PWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       134 d~v~d~~g~~-----------~~~~~~~~l~~~G~iv~~g  162 (240)
                      |+|+--+..+           .+..+.+.|+++|.++.-.
T Consensus       152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~  191 (283)
T PRK00811        152 DVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS  191 (283)
T ss_pred             cEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence            9997544211           1456778999999988643

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=95.16  E-value=0.061  Score=42.81  Aligned_cols=77  Identities=22%  Similarity=0.198  Sum_probs=50.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH----hcCCC--EE----EeCCCCc--cccc---cCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK----SLGAD--EV----LDYKTPD--GAAL---KSPS  129 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~----~~g~~--~v----~~~~~~~--~~~~---~~~~  129 (240)
                      .++.++|+|++.|+|.+++..+...|++|+.+.++ ++.+..+    ..+..  .+    .|..+.+  ....   .+..
T Consensus         7 ~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~~   86 (270)
T KOG0725|consen    7 AGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEKF   86 (270)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHHh
Confidence            78999999999999999999999999999999975 5443332    22221  11    1222222  1111   1122


Q ss_pred             CCcccEEEeCCCC
Q 045248          130 GRKYDAVIHCATG  142 (240)
Q Consensus       130 ~~~~d~v~d~~g~  142 (240)
                      ..++|+.++..|.
T Consensus        87 ~GkidiLvnnag~   99 (270)
T KOG0725|consen   87 FGKIDILVNNAGA   99 (270)
T ss_pred             CCCCCEEEEcCCc
Confidence            4679999999884

>PRK14967 putative methyltransferase; Provisional

Probab=95.15  E-value=0.071  Score=41.12  Aligned_cols=89  Identities=24%  Similarity=0.258  Sum_probs=53.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHHHHH----hcCCC-EEEeCCCCccccccCCCCCcccEEE
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNIEFVK----SLGAD-EVLDYKTPDGAALKSPSGRKYDAVI  137 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~~~~----~~g~~-~v~~~~~~~~~~~~~~~~~~~d~v~  137 (240)
                      +++++||-.| +|. |..++.+++. ++ +|++++.+ ...+.++    ..+.. .++..   +..  .......||+|+
T Consensus        35 ~~~~~vLDlG-cG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~---d~~--~~~~~~~fD~Vi  106 (223)
T PRK14967         35 GPGRRVLDLC-TGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRG---DWA--RAVEFRPFDVVV  106 (223)
T ss_pred             CCCCeEEEec-CCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEEC---chh--hhccCCCeeEEE
Confidence            6788999999 665 8888888875 66 89999954 4454443    34432 22221   111  111235799998


Q ss_pred             eCCCC----C------------------------CccccccCCCCCcEEEEe
Q 045248          138 HCATG----I------------------------PWSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       138 d~~g~----~------------------------~~~~~~~~l~~~G~iv~~  161 (240)
                      -...-    .                        .+..+.+.|+++|+++.+
T Consensus       107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~  158 (223)
T PRK14967        107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV  158 (223)
T ss_pred             ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            65320    0                        123456788889988765

>PLN02928 oxidoreductase family protein

Probab=95.15  E-value=0.11  Score=42.94  Aligned_cols=92  Identities=16%  Similarity=0.157  Sum_probs=57.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcC----C-CEEEe--CCCCc-cccccCCCCCcccEEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLG----A-DEVLD--YKTPD-GAALKSPSGRKYDAVI  137 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g----~-~~v~~--~~~~~-~~~~~~~~~~~~d~v~  137 (240)
                      .|+++.|+| .|.+|..+++.++.+|++|++..+..+.+....++    . ....+  ....+ ...+     ...|+|+
T Consensus       158 ~gktvGIiG-~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell-----~~aDiVv  231 (347)
T PLN02928        158 FGKTVFILG-YGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFA-----GEADIVV  231 (347)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHH-----hhCCEEE
Confidence            689999999 99999999999999999999988642222111111    0 00000  00001 1111     2468888


Q ss_pred             eCCCC--CC----ccccccCCCCCcEEEEeCC
Q 045248          138 HCATG--IP----WSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       138 d~~g~--~~----~~~~~~~l~~~G~iv~~g~  163 (240)
                      -++..  ++    -...+..++++..++.++-
T Consensus       232 l~lPlt~~T~~li~~~~l~~Mk~ga~lINvaR  263 (347)
T PLN02928        232 LCCTLTKETAGIVNDEFLSSMKKGALLVNIAR  263 (347)
T ss_pred             ECCCCChHhhcccCHHHHhcCCCCeEEEECCC
Confidence            88762  11    2356678888888888863

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.14  E-value=0.37  Score=38.49  Aligned_cols=95  Identities=20%  Similarity=0.144  Sum_probs=67.0

Q ss_pred             hhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCC
Q 045248           41 GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKT  119 (240)
Q Consensus        41 ~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~  119 (240)
                      ..||+.......+ +..++.    -.|++++|+|.+.-+|.-+..++...|+.|+.+.+. ..++..             
T Consensus       137 ~~PcTp~av~~lL-~~~~i~----l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~~l~~~-------------  198 (284)
T PRK14190        137 FLPCTPHGILELL-KEYNID----ISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKNLAEL-------------  198 (284)
T ss_pred             CCCCCHHHHHHHH-HHcCCC----CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCchhHHHH-------------
Confidence            4577776666666 555653    389999999999999999999999999988876432 211111             


Q ss_pred             CccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248          120 PDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       120 ~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                           .     +..|+++-++|.+.+ -.-+.+++|..++.+|..
T Consensus       199 -----~-----~~ADIvI~AvG~p~~-i~~~~ik~gavVIDvGi~  232 (284)
T PRK14190        199 -----T-----KQADILIVAVGKPKL-ITADMVKEGAVVIDVGVN  232 (284)
T ss_pred             -----H-----HhCCEEEEecCCCCc-CCHHHcCCCCEEEEeecc
Confidence                 0     346788888886553 223567888888888854

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=95.14  E-value=0.19  Score=40.56  Aligned_cols=91  Identities=15%  Similarity=0.142  Sum_probs=56.7

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHhcCCCEEEeCCCCcc--ccccC-CCCCcccEEEeCCCCCC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPDG--AALKS-PSGRKYDAVIHCATGIP  144 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~--~~~~~-~~~~~~d~v~d~~g~~~  144 (240)
                      +|+|+| +|.+|......+...|.+|+.+++ +++.+.+++.|...  +..+...  ..... ..-..+|+||-++....
T Consensus         2 ~I~IiG-~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~d~vila~k~~~   78 (304)
T PRK06522          2 KIAILG-AGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRL--EDGEITVPVLAADDPAELGPQDLVILAVKAYQ   78 (304)
T ss_pred             EEEEEC-CCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcc--cCCceeecccCCCChhHcCCCCEEEEeccccc
Confidence            589999 899999988888888999999987 46666676656421  1000000  00010 01157899999998655


Q ss_pred             ccccccC----CCCCcEEEEeC
Q 045248          145 WSTFEPN----LGTNGKVIDIT  162 (240)
Q Consensus       145 ~~~~~~~----l~~~G~iv~~g  162 (240)
                      ...+++.    +.++..++.+.
T Consensus        79 ~~~~~~~l~~~l~~~~~iv~~~  100 (304)
T PRK06522         79 LPAALPSLAPLLGPDTPVLFLQ  100 (304)
T ss_pred             HHHHHHHHhhhcCCCCEEEEec
Confidence            4444444    44445666554

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=95.14  E-value=0.26  Score=38.41  Aligned_cols=103  Identities=18%  Similarity=0.192  Sum_probs=68.2

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC--EEEEEe-CcccHHHH----HhcCCCEEEeCCCCccccccC
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT--HVTASC-GARNIEFV----KSLGADEVLDYKTPDGAALKS  127 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~-~~~~~~~~----~~~g~~~v~~~~~~~~~~~~~  127 (240)
                      .+.++     .+|++|+=-|  -|.|.++.-+|.+.|-  +|+... +++..+.+    +++|....+.....|  ..+.
T Consensus        88 ~~~gi-----~pg~rVlEAG--tGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~D--v~~~  158 (256)
T COG2519          88 ARLGI-----SPGSRVLEAG--TGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGD--VREG  158 (256)
T ss_pred             HHcCC-----CCCCEEEEcc--cCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecc--cccc
Confidence            56677     8999998766  4568888888887775  899888 45665555    345543322222222  1111


Q ss_pred             CCCCcccEEEeCCCCC--CccccccCCCCCcEEEEeCCCch
Q 045248          128 PSGRKYDAVIHCATGI--PWSTFEPNLGTNGKVIDITPGPS  166 (240)
Q Consensus       128 ~~~~~~d~v~d~~g~~--~~~~~~~~l~~~G~iv~~g~~~~  166 (240)
                      ..+..||.++--...+  .++.+.+.|+++|.++.+.+..+
T Consensus       159 ~~~~~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P~ve  199 (256)
T COG2519         159 IDEEDVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSPTVE  199 (256)
T ss_pred             ccccccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcCCHH
Confidence            2234799887666553  38889999999999998876543

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.13  E-value=0.39  Score=38.34  Aligned_cols=95  Identities=15%  Similarity=0.124  Sum_probs=66.8

Q ss_pred             hhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCC
Q 045248           41 GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKT  119 (240)
Q Consensus        41 ~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~  119 (240)
                      ..||+....+..+ +..++.    -.|++++|+|.+.-+|.=+..++...|+.|+..-+. ..++..             
T Consensus       135 ~~PcTp~avi~lL-~~~~i~----l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T~~l~~~-------------  196 (282)
T PRK14169        135 VVASTPYGIMALL-DAYDID----VAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKTRNLKQL-------------  196 (282)
T ss_pred             CCCCCHHHHHHHH-HHhCCC----CCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCCCCHHHH-------------
Confidence            4577766666666 555553    389999999988899999999999999988866542 222211             


Q ss_pred             CccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248          120 PDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       120 ~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                           .     +..|+++-++|.+.+ ---+.+++|..++.+|..
T Consensus       197 -----~-----~~ADIvI~AvG~p~~-i~~~~vk~GavVIDvGin  230 (282)
T PRK14169        197 -----T-----KEADILVVAVGVPHF-IGADAVKPGAVVIDVGIS  230 (282)
T ss_pred             -----H-----hhCCEEEEccCCcCc-cCHHHcCCCcEEEEeecc
Confidence                 0     236788888887654 224578888888888853

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=95.11  E-value=0.15  Score=36.69  Aligned_cols=96  Identities=13%  Similarity=0.150  Sum_probs=54.3

Q ss_pred             eEEEEcCCchHHHHHHHHHHh-CCCEEEEEeCc---ccHHHHHh----cCC-CEEEeCCCCc-------cccccCC----
Q 045248           69 NILVTAASGGVGHYAVQLAKL-GNTHVTASCGA---RNIEFVKS----LGA-DEVLDYKTPD-------GAALKSP----  128 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~-~g~~v~~~~~~---~~~~~~~~----~g~-~~v~~~~~~~-------~~~~~~~----  128 (240)
                      +|.|+| .|.+|...++.+.. .+.+++++...   +...++-+    .|. ...+...+..       .......    
T Consensus         2 kv~I~G-~GriGr~v~~~~~~~~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~p~~   80 (149)
T smart00846        2 KVGING-FGRIGRLVLRALLERPDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDPAN   80 (149)
T ss_pred             EEEEEC-cCHHHHHHHHHHHhCCCCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCChHH
Confidence            588999 79999998888774 45677776642   33344422    221 0001111110       0011111    


Q ss_pred             ---CCCcccEEEeCCCC-CCccccccCCCCCcEEEEeCCCc
Q 045248          129 ---SGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus       129 ---~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~~~  165 (240)
                         ...++|+|+||+|. .....+...++.|.+-|.++.+.
T Consensus        81 ~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~  121 (149)
T smart00846       81 LPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPA  121 (149)
T ss_pred             CcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCC
Confidence               23578999999986 33445556777776666666553

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PLN02427 UDP-apiose/xylose synthase

Probab=95.09  E-value=0.096  Score=43.93  Aligned_cols=75  Identities=15%  Similarity=0.057  Sum_probs=45.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhC-CCEEEEEeCc-ccHHHHHhcCC------CEEEeCCCCccccccCCCCCcccEEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLG-NTHVTASCGA-RNIEFVKSLGA------DEVLDYKTPDGAALKSPSGRKYDAVI  137 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~-g~~v~~~~~~-~~~~~~~~~g~------~~v~~~~~~~~~~~~~~~~~~~d~v~  137 (240)
                      ...+|||+||+|-+|..+++.+... |.+|+++++. ++.+.+...+.      ...+..+-.+...+.... .++|+||
T Consensus        13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~-~~~d~Vi   91 (386)
T PLN02427         13 KPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLI-KMADLTI   91 (386)
T ss_pred             cCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHh-hcCCEEE
Confidence            3457999999999999999888877 5799998854 44443332221      112211111111111111 2589999


Q ss_pred             eCCC
Q 045248          138 HCAT  141 (240)
Q Consensus       138 d~~g  141 (240)
                      .+++
T Consensus        92 HlAa   95 (386)
T PLN02427         92 NLAA   95 (386)
T ss_pred             Eccc
Confidence            9996

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.09  E-value=0.38  Score=38.42  Aligned_cols=94  Identities=21%  Similarity=0.157  Sum_probs=65.4

Q ss_pred             hhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCC
Q 045248           41 GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKT  119 (240)
Q Consensus        41 ~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~  119 (240)
                      ..||+.......+ +..++.    -.|+++.|+|.+|-+|.-...++...|+.|++.-+. +..+.              
T Consensus       137 ~~PcTp~avi~lL-~~~~i~----l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~~l~~--------------  197 (284)
T PRK14179        137 MIPCTPAGIMEMF-REYNVE----LEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLAE--------------  197 (284)
T ss_pred             CcCCCHHHHHHHH-HHhCCC----CCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCCCHHH--------------
Confidence            4577776666666 555553    389999999988999999999999999988876322 21110              


Q ss_pred             CccccccCCCCCcccEEEeCCCCCC-ccccccCCCCCcEEEEeCCC
Q 045248          120 PDGAALKSPSGRKYDAVIHCATGIP-WSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       120 ~~~~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~g~~  164 (240)
                          ..     +..|+|+-++|.+. +..  ..+++|..++.+|..
T Consensus       198 ----~~-----~~ADIVI~avg~~~~v~~--~~ik~GavVIDvgin  232 (284)
T PRK14179        198 ----VA-----RKADILVVAIGRGHFVTK--EFVKEGAVVIDVGMN  232 (284)
T ss_pred             ----HH-----hhCCEEEEecCccccCCH--HHccCCcEEEEecce
Confidence                00     34778888888755 333  348888888888754

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.09  E-value=0.061  Score=43.74  Aligned_cols=42  Identities=29%  Similarity=0.323  Sum_probs=36.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV  106 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~  106 (240)
                      -.+.+++|+|+++|+|...++-+...|++|+..+++ ++.+.+
T Consensus        33 ~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~   75 (314)
T KOG1208|consen   33 LSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEA   75 (314)
T ss_pred             CCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence            467899999999999999999999999999999986 444333

>PRK07201 short chain dehydrogenase; Provisional

Probab=95.07  E-value=0.066  Score=48.22  Aligned_cols=77  Identities=17%  Similarity=0.228  Sum_probs=48.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCC-EEE--eCCCCc--cccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGAD-EVL--DYKTPD--GAALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~-~v~--~~~~~~--~~~~~~--~~~~~~  133 (240)
                      .+++++|+||+|++|..+++.+...|++|+++.++ ++.+.+    +..+.. .++  |..+..  ...++.  ..-.++
T Consensus       370 ~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i  449 (657)
T PRK07201        370 VGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEHGHV  449 (657)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence            36789999999999999999888899999999964 443332    223332 222  222211  111111  112369


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.+.|.
T Consensus       450 d~li~~Ag~  458 (657)
T PRK07201        450 DYLVNNAGR  458 (657)
T ss_pred             CEEEECCCC
Confidence            999999983

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=95.06  E-value=0.045  Score=45.23  Aligned_cols=46  Identities=22%  Similarity=0.153  Sum_probs=37.6

Q ss_pred             HHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           48 TAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        48 ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      |||.-+.....+      ..++|||+||+|-+|..++..+...|.+|+++++
T Consensus         2 ~~~~~~~~~~~~------~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~   47 (348)
T PRK15181          2 TAYEELRTKLVL------APKRWLITGVAGFIGSGLLEELLFLNQTVIGLDN   47 (348)
T ss_pred             chhhhhhhcccc------cCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence            566666444444      5579999999999999999999999999999985

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=95.02  E-value=0.44  Score=35.72  Aligned_cols=121  Identities=18%  Similarity=0.063  Sum_probs=72.7

Q ss_pred             hhhchHHHHHHHHHHhhhCCC---cCC--CCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEE
Q 045248           40 SGLPVAGLTAHQALTQSAGVK---LDG--SGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEV  114 (240)
Q Consensus        40 a~~~~~~~ta~~~l~~~~~~~---~~~--~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v  114 (240)
                      ..+||+....+..+ +..++.   .|.  .-.|++++|+|.+.-+|.=+..++...|+.|+.+..+.-..+.+.-.-.+-
T Consensus        31 ~~~PCTp~avi~lL-~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs  109 (197)
T cd01079          31 SILPCTPLAIVKIL-EFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHE  109 (197)
T ss_pred             CccCCCHHHHHHHH-HHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccc
Confidence            35677776777777 444320   000  038999999998889999999999999999997753211111100000000


Q ss_pred             EeCCC-Cc-cccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248          115 LDYKT-PD-GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       115 ~~~~~-~~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                        ... .+ ...+.+ .-+..|+|+-++|.+.+.---+.+++|..++.+|..
T Consensus       110 --~t~~~~~~~~l~~-~~~~ADIVIsAvG~~~~~i~~d~ik~GavVIDVGi~  158 (197)
T cd01079         110 --KHHVTDEEAMTLD-CLSQSDVVITGVPSPNYKVPTELLKDGAICINFASI  158 (197)
T ss_pred             --cccccchhhHHHH-HhhhCCEEEEccCCCCCccCHHHcCCCcEEEEcCCC
Confidence              000 00 000100 114589999999987653445788999999999864

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK06128 oxidoreductase; Provisional

Probab=95.02  E-value=0.067  Score=43.19  Aligned_cols=34  Identities=18%  Similarity=0.240  Sum_probs=30.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      .++++||+||+|++|..+++.+...|++|+.+.+
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~   87 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGADIALNYL   87 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence            5789999999999999999999999999887764

>PLN02366 spermidine synthase

Probab=95.02  E-value=0.065  Score=43.46  Aligned_cols=96  Identities=21%  Similarity=0.246  Sum_probs=54.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHHHHHhc-CC-CEEEeCC-----CCcc-ccccCCCCCccc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNIEFVKSL-GA-DEVLDYK-----TPDG-AALKSPSGRKYD  134 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~-g~-~~v~~~~-----~~~~-~~~~~~~~~~~d  134 (240)
                      ++.++||++| +|. |..+..+++..+. +|.++.-+ +-.+.+++. .. ...++..     ..+. ..++...++.||
T Consensus        90 ~~pkrVLiIG-gG~-G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yD  167 (308)
T PLN02366         90 PNPKKVLVVG-GGD-GGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYD  167 (308)
T ss_pred             CCCCeEEEEc-CCc-cHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCC
Confidence            4668999999 343 5566777887665 78787744 444555442 11 0011100     0111 112222346799


Q ss_pred             EEEeCCCCC-----------CccccccCCCCCcEEEEeC
Q 045248          135 AVIHCATGI-----------PWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       135 ~v~d~~g~~-----------~~~~~~~~l~~~G~iv~~g  162 (240)
                      +|+--...+           .+..+.++|+++|.++.-.
T Consensus       168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~  206 (308)
T PLN02366        168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA  206 (308)
T ss_pred             EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence            997543221           2567788999999997543

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=95.01  E-value=0.048  Score=44.36  Aligned_cols=71  Identities=27%  Similarity=0.339  Sum_probs=45.0

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEE-eCCCCccccccCCCCCcccEEEeCCCC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVL-DYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~-~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      +++|.|++|.+|..+++.+...|.+|+++.+. ++.....+.+...+. |..+.  ..+.... .++|+||.+++.
T Consensus         2 ~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~--~~l~~~~-~~~d~vi~~a~~   74 (328)
T TIGR03466         2 KVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDP--ASLRKAV-AGCRALFHVAAD   74 (328)
T ss_pred             eEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCH--HHHHHHH-hCCCEEEEecee
Confidence            68999999999999999999999999999964 433333333432221 22221  1111111 357999998863

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=95.01  E-value=0.072  Score=41.78  Aligned_cols=77  Identities=21%  Similarity=0.183  Sum_probs=48.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCC-EEE--eCCCCc-c-ccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGAD-EVL--DYKTPD-G-AALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~-~v~--~~~~~~-~-~~~~~--~~~~~~  133 (240)
                      .+++++|+|++|++|..+++.+...|++|+.+++. ++.+.+    ++.+.. ..+  |..+.+ . ..+..  ..-.++
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~~   89 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLGKV   89 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            57999999999999999999999999999888864 333222    333432 222  222221 1 11110  112468


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.+.|.
T Consensus        90 d~li~~ag~   98 (255)
T PRK06113         90 DILVNNAGG   98 (255)
T ss_pred             CEEEECCCC
Confidence            999999983

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=95.00  E-value=0.05  Score=43.47  Aligned_cols=32  Identities=31%  Similarity=0.331  Sum_probs=28.6

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      +|||.||+|.+|..+++.+...|.+|+++.+.
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~   32 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSS   32 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc
Confidence            48999999999999999999899999988763

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.98  E-value=0.45  Score=37.96  Aligned_cols=96  Identities=19%  Similarity=0.119  Sum_probs=68.8

Q ss_pred             hhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHhcCCCEEEeCC
Q 045248           40 SGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYK  118 (240)
Q Consensus        40 a~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~v~~~~  118 (240)
                      ...||+....+..+ +..++.    -.|++++|+|.+.-+|.=+..++...|+.|+.+-+ ...++..            
T Consensus       136 ~~~PcTp~aii~lL-~~y~i~----l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~dl~~~------------  198 (282)
T PRK14180        136 CLESCTPKGIMTML-REYGIK----TEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSH------------  198 (282)
T ss_pred             CcCCCCHHHHHHHH-HHhCCC----CCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCCCCHHHH------------
Confidence            35677776666667 555543    38999999999999999999999999998877654 2222211            


Q ss_pred             CCccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248          119 TPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                                 -+..|+++-++|.+.+ ---+.+++|..++.+|..
T Consensus       199 -----------~k~ADIvIsAvGkp~~-i~~~~vk~gavVIDvGin  232 (282)
T PRK14180        199 -----------TTKADILIVAVGKPNF-ITADMVKEGAVVIDVGIN  232 (282)
T ss_pred             -----------hhhcCEEEEccCCcCc-CCHHHcCCCcEEEEeccc
Confidence                       0347888888887664 223678888888888853

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=94.94  E-value=0.059  Score=41.52  Aligned_cols=32  Identities=28%  Similarity=0.402  Sum_probs=28.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEe
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNT-HVTASC   98 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~   98 (240)
                      +...|+|+| .||+|.+++..+...|+ ++..++
T Consensus        29 ~~~~V~VvG-iGGVGSw~veALaRsGig~itlID   61 (263)
T COG1179          29 KQAHVCVVG-IGGVGSWAVEALARSGIGRITLID   61 (263)
T ss_pred             hhCcEEEEe-cCchhHHHHHHHHHcCCCeEEEEe
Confidence            557899999 99999999999999998 776665

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=94.93  E-value=0.36  Score=39.53  Aligned_cols=89  Identities=19%  Similarity=0.101  Sum_probs=61.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC--
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG--  142 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~--  142 (240)
                      -.|+++.|+| .|.||.+..+.++.+|++|+...+..+.+..++.++..+ +   .+ ..+     ...|++.-.+..  
T Consensus       144 l~gktvGIiG-~GrIG~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~-~---l~-ell-----~~sDii~l~~Plt~  212 (324)
T COG1052         144 LRGKTLGIIG-LGRIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYV-D---LD-ELL-----AESDIISLHCPLTP  212 (324)
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHhcCCCEEEEECCCCChHHHhhcCceec-c---HH-HHH-----HhCCEEEEeCCCCh
Confidence            4699999999 999999999999999999999997755333344444322 1   11 111     235677666542  


Q ss_pred             CC----ccccccCCCCCcEEEEeCCC
Q 045248          143 IP----WSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       143 ~~----~~~~~~~l~~~G~iv~~g~~  164 (240)
                      ++    -...+..+++++.+|.++-.
T Consensus       213 ~T~hLin~~~l~~mk~ga~lVNtaRG  238 (324)
T COG1052         213 ETRHLINAEELAKMKPGAILVNTARG  238 (324)
T ss_pred             HHhhhcCHHHHHhCCCCeEEEECCCc
Confidence            22    23566789999999988743

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.91  E-value=0.45  Score=38.06  Aligned_cols=95  Identities=17%  Similarity=0.143  Sum_probs=66.8

Q ss_pred             hhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCC
Q 045248           41 GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKT  119 (240)
Q Consensus        41 ~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~  119 (240)
                      ..||+....+..+ +..+++    -.|++++|+|.+.-+|.=+..++...|+.|+...+. ..++..             
T Consensus       134 ~~PcTp~avi~lL-~~~~i~----l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T~~l~~~-------------  195 (287)
T PRK14173        134 LEPCTPAGVVRLL-KHYGIP----LAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKTQDLPAV-------------  195 (287)
T ss_pred             CCCCCHHHHHHHH-HHcCCC----CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCCCCHHHH-------------
Confidence            4577766666666 555553    389999999999999999999999999988866542 222211             


Q ss_pred             CccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248          120 PDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       120 ~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                           .     +..|+++-++|.+.+- --+.+++|..++.+|..
T Consensus       196 -----~-----~~ADIvIsAvGkp~~i-~~~~vk~GavVIDVGin  229 (287)
T PRK14173        196 -----T-----RRADVLVVAVGRPHLI-TPEMVRPGAVVVDVGIN  229 (287)
T ss_pred             -----H-----hhCCEEEEecCCcCcc-CHHHcCCCCEEEEccCc
Confidence                 0     2367888888876532 34567888888888854

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=94.89  E-value=0.1  Score=45.67  Aligned_cols=86  Identities=16%  Similarity=0.092  Sum_probs=54.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC--
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI--  143 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~--  143 (240)
                      .|+++.|+| .|.+|...++.++.+|++|++.++....+...++|...+ +.    ...+     ...|+|+-++...  
T Consensus       139 ~gktvgIiG-~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~-~l----~ell-----~~aDiV~l~lP~t~~  207 (526)
T PRK13581        139 YGKTLGIIG-LGRIGSEVAKRAKAFGMKVIAYDPYISPERAAQLGVELV-SL----DELL-----ARADFITLHTPLTPE  207 (526)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEE-cH----HHHH-----hhCCEEEEccCCChH
Confidence            588999999 999999999999999999999986433334445554322 10    0111     2356666666531  


Q ss_pred             C---c-cccccCCCCCcEEEEeC
Q 045248          144 P---W-STFEPNLGTNGKVIDIT  162 (240)
Q Consensus       144 ~---~-~~~~~~l~~~G~iv~~g  162 (240)
                      +   + ...+..++++..++.++
T Consensus       208 t~~li~~~~l~~mk~ga~lIN~a  230 (526)
T PRK13581        208 TRGLIGAEELAKMKPGVRIINCA  230 (526)
T ss_pred             hhcCcCHHHHhcCCCCeEEEECC
Confidence            1   1 23455666766666554

>PRK08303 short chain dehydrogenase; Provisional

Probab=94.87  E-value=0.06  Score=43.66  Aligned_cols=35  Identities=20%  Similarity=0.154  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .+++++|+||++++|.++++.+...|++|+.++++
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~   41 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGAAGATVYVTGRS   41 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence            57899999999999999999999999999988853

>PRK07832 short chain dehydrogenase; Provisional

Probab=94.86  E-value=0.072  Score=42.25  Aligned_cols=75  Identities=20%  Similarity=0.217  Sum_probs=47.0

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCCE----EEeCCCCc--cccccC--CCCCccc
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGADE----VLDYKTPD--GAALKS--PSGRKYD  134 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~~----v~~~~~~~--~~~~~~--~~~~~~d  134 (240)
                      ++++|+||+|++|..+++.+...|++|+.+.++ ++.+..    +..+...    ..|..+..  ......  ....++|
T Consensus         1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMD   80 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence            368999999999999999998999999888864 333222    3334321    12333222  111111  1124689


Q ss_pred             EEEeCCCC
Q 045248          135 AVIHCATG  142 (240)
Q Consensus       135 ~v~d~~g~  142 (240)
                      +++.+.|.
T Consensus        81 ~lv~~ag~   88 (272)
T PRK07832         81 VVMNIAGI   88 (272)
T ss_pred             EEEECCCC
Confidence            99999984

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=94.86  E-value=0.082  Score=42.68  Aligned_cols=74  Identities=23%  Similarity=0.209  Sum_probs=42.5

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCC--CEEEEEeCc---ccHHHHHhcC---CCEEEeCCCCccccc-cCCCCCcccEEEeC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGN--THVTASCGA---RNIEFVKSLG---ADEVLDYKTPDGAAL-KSPSGRKYDAVIHC  139 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g--~~v~~~~~~---~~~~~~~~~g---~~~v~~~~~~~~~~~-~~~~~~~~d~v~d~  139 (240)
                      +|+|+||+|.+|..+++.+...|  .+|++..+.   .+.+.+.++.   -..++..+-.+...+ +...+.++|+||++
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~   80 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVVHF   80 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEEEc
Confidence            48999999999999998777666  688887642   2222222221   112222111111111 11122358999999


Q ss_pred             CCC
Q 045248          140 ATG  142 (240)
Q Consensus       140 ~g~  142 (240)
                      ++.
T Consensus        81 a~~   83 (317)
T TIGR01181        81 AAE   83 (317)
T ss_pred             ccc
Confidence            974

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=94.85  E-value=0.098  Score=42.40  Aligned_cols=31  Identities=26%  Similarity=0.260  Sum_probs=27.6

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      +|||+||+|.+|..+++.+...|.+|+++.+
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~   31 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDN   31 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeC
Confidence            4899999999999999999989999887764

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PRK07402 precorrin-6B methylase; Provisional

Probab=94.85  E-value=0.26  Score=37.11  Aligned_cols=101  Identities=13%  Similarity=0.167  Sum_probs=55.0

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhC-CCEEEEEeCc-ccHHHH----HhcCCCE--EEeCCCCcccccc
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLG-NTHVTASCGA-RNIEFV----KSLGADE--VLDYKTPDGAALK  126 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~-g~~v~~~~~~-~~~~~~----~~~g~~~--v~~~~~~~~~~~~  126 (240)
                      ...++     +++++||=.|  .|.|..++.+++.. +.+|++++.+ +..+.+    ++++...  ++..+..  ....
T Consensus        34 ~~l~~-----~~~~~VLDiG--~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~--~~~~  104 (196)
T PRK07402         34 SQLRL-----EPDSVLWDIG--AGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAP--ECLA  104 (196)
T ss_pred             HhcCC-----CCCCEEEEeC--CCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchH--HHHh
Confidence            55555     6888887776  33455566666654 4699999964 555444    3455432  2221111  1111


Q ss_pred             CCCCCcccEEEeCCCC--CCccccccCCCCCcEEEEeCCC
Q 045248          127 SPSGRKYDAVIHCATG--IPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       127 ~~~~~~~d~v~d~~g~--~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      ......-++.++....  ..+..+.+.|+++|+++.....
T Consensus       105 ~~~~~~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  144 (196)
T PRK07402        105 QLAPAPDRVCIEGGRPIKEILQAVWQYLKPGGRLVATASS  144 (196)
T ss_pred             hCCCCCCEEEEECCcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence            1111112334443222  2267788899999998877543

>PLN02240 UDP-glucose 4-epimerase

Probab=94.85  E-value=0.11  Score=42.87  Aligned_cols=34  Identities=26%  Similarity=0.267  Sum_probs=30.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      .+++|||.||+|.+|..+++.+...|.+|+++++
T Consensus         4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~   37 (352)
T PLN02240          4 MGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDN   37 (352)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence            4688999999999999999988888999998874

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.84  E-value=0.35  Score=39.41  Aligned_cols=94  Identities=15%  Similarity=0.094  Sum_probs=58.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEEEeCCCC-ccc---cccC-CCCCcccEEEeCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTP-DGA---ALKS-PSGRKYDAVIHCA  140 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~-~~~---~~~~-~~~~~~d~v~d~~  140 (240)
                      ...+|+|+| +|.+|......+...|.+|..+.++. .+..++.|.. +-..... ...   .... .....+|+||-|+
T Consensus         4 ~~m~I~IiG-~GaiG~~lA~~L~~~g~~V~~~~r~~-~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~vilav   80 (313)
T PRK06249          4 ETPRIGIIG-TGAIGGFYGAMLARAGFDVHFLLRSD-YEAVRENGLQ-VDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGL   80 (313)
T ss_pred             cCcEEEEEC-CCHHHHHHHHHHHHCCCeEEEEEeCC-HHHHHhCCeE-EEeCCCCeeecCceEEcchhhcCCCCEEEEEe
Confidence            345899999 99999998888888899999888754 3445555532 1111110 000   0011 1124689999998


Q ss_pred             CCCC----ccccccCCCCCcEEEEeC
Q 045248          141 TGIP----WSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       141 g~~~----~~~~~~~l~~~G~iv~~g  162 (240)
                      -...    +......+.+++.++.+-
T Consensus        81 K~~~~~~~~~~l~~~~~~~~~iv~lq  106 (313)
T PRK06249         81 KTTANALLAPLIPQVAAPDAKVLLLQ  106 (313)
T ss_pred             cCCChHhHHHHHhhhcCCCCEEEEec
Confidence            6543    334444567788887763

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.84  E-value=0.49  Score=37.98  Aligned_cols=96  Identities=17%  Similarity=0.067  Sum_probs=67.3

Q ss_pred             hhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCC
Q 045248           40 SGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYK  118 (240)
Q Consensus        40 a~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~  118 (240)
                      ..+||+....+..+ +..++.    -.|++++|+|.+.-+|.=+..++...++.|+.+.+. ..++..            
T Consensus       138 ~~~PcTp~avi~lL-~~~~i~----l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T~~l~~~------------  200 (294)
T PRK14187        138 CLIPCTPKGCLYLI-KTITRN----LSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSATRDLADY------------  200 (294)
T ss_pred             CccCcCHHHHHHHH-HHhCCC----CCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCCCCHHHH------------
Confidence            34577766666666 555553    389999999988899999999999999998877652 222211            


Q ss_pred             CCccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248          119 TPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                                 -+..|+++-++|.+.+ ---+.+++|..++.+|..
T Consensus       201 -----------~~~ADIvVsAvGkp~~-i~~~~ik~gaiVIDVGin  234 (294)
T PRK14187        201 -----------CSKADILVAAVGIPNF-VKYSWIKKGAIVIDVGIN  234 (294)
T ss_pred             -----------HhhCCEEEEccCCcCc-cCHHHcCCCCEEEEeccc
Confidence                       0346788888886553 223567788888888753

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.82  E-value=0.11  Score=44.51  Aligned_cols=69  Identities=19%  Similarity=0.180  Sum_probs=46.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcc--cH----HHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGAR--NI----EFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHC  139 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~--~~----~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~  139 (240)
                      .+++++|+| +|++|+.++..+...|++|++++...  ..    +.+++.|.. ++.....+ .     ...++|+|+-+
T Consensus         4 ~~k~v~iiG-~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~-~~~~~~~~-~-----~~~~~d~vv~~   75 (450)
T PRK14106          4 KGKKVLVVG-AGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIE-LVLGEYPE-E-----FLEGVDLVVVS   75 (450)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCE-EEeCCcch-h-----HhhcCCEEEEC
Confidence            578999999 67799999999999999999988642  22    333455543 32222111 1     12468999999


Q ss_pred             CCC
Q 045248          140 ATG  142 (240)
Q Consensus       140 ~g~  142 (240)
                      .|.
T Consensus        76 ~g~   78 (450)
T PRK14106         76 PGV   78 (450)
T ss_pred             CCC
Confidence            884

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.80  E-value=0.44  Score=37.96  Aligned_cols=95  Identities=19%  Similarity=0.140  Sum_probs=66.1

Q ss_pred             hhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCC
Q 045248           41 GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKT  119 (240)
Q Consensus        41 ~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~  119 (240)
                      ..|++....+..+ +..++.    -.|++++|+|.+..+|.-+..++...|+.|....+. ..++..             
T Consensus       131 ~~PcTp~av~~ll-~~~~i~----l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~~-------------  192 (279)
T PRK14178        131 FAPCTPNGIMTLL-HEYKIS----IAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAE-------------  192 (279)
T ss_pred             CCCCCHHHHHHHH-HHcCCC----CCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHHH-------------
Confidence            4577766666666 555553    389999999977799999999999999988887753 211111             


Q ss_pred             CccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248          120 PDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       120 ~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                           .     +..|+++-++|.+.+ -.-+.+++|..++.+|..
T Consensus       193 -----~-----~~ADIvI~Avgk~~l-v~~~~vk~GavVIDVgi~  226 (279)
T PRK14178        193 -----L-----RQADILVSAAGKAGF-ITPDMVKPGATVIDVGIN  226 (279)
T ss_pred             -----H-----hhCCEEEECCCcccc-cCHHHcCCCcEEEEeecc
Confidence                 0     347888888885432 122347889899888854

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.79  E-value=0.55  Score=37.51  Aligned_cols=96  Identities=17%  Similarity=0.161  Sum_probs=67.4

Q ss_pred             hhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCC
Q 045248           40 SGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYK  118 (240)
Q Consensus        40 a~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~  118 (240)
                      ...||+....+..+ +..++.    -.|++++|+|.+.-+|.=+..++...++.|+.+-+. ..++..            
T Consensus       135 ~~~PcTp~avi~lL-~~y~i~----l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T~nl~~~------------  197 (282)
T PRK14166        135 GFLPCTPLGVMKLL-KAYEID----LEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLY------------  197 (282)
T ss_pred             CCcCCCHHHHHHHH-HHhCCC----CCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHH------------
Confidence            34677776666666 555553    389999999988899999999999899988866542 222211            


Q ss_pred             CCccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248          119 TPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                                 -+..|+++-++|.+.+ -.-+.+++|..++.+|..
T Consensus       198 -----------~~~ADIvIsAvGkp~~-i~~~~vk~GavVIDvGin  231 (282)
T PRK14166        198 -----------TRQADLIIVAAGCVNL-LRSDMVKEGVIVVDVGIN  231 (282)
T ss_pred             -----------HhhCCEEEEcCCCcCc-cCHHHcCCCCEEEEeccc
Confidence                       0347788888887653 223578888888888853

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=94.78  E-value=0.34  Score=31.16  Aligned_cols=33  Identities=21%  Similarity=0.220  Sum_probs=26.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCG   99 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~   99 (240)
                      .+++++|+| +|.+|..+.+.+...+. ++....+
T Consensus        22 ~~~~v~i~G-~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          22 KGKTVVVLG-AGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            678999999 79999999999988854 6655544

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PLN02583 cinnamoyl-CoA reductase

Probab=94.78  E-value=0.073  Score=42.95  Aligned_cols=36  Identities=28%  Similarity=0.256  Sum_probs=32.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .++++|||+||+|.+|..+++.+...|++|+++.++
T Consensus         4 ~~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~   39 (297)
T PLN02583          4 ESSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQK   39 (297)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence            467899999999999999999999999999998863

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.77  E-value=0.52  Score=37.65  Aligned_cols=95  Identities=19%  Similarity=0.186  Sum_probs=66.4

Q ss_pred             hhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCC
Q 045248           41 GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKT  119 (240)
Q Consensus        41 ~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~  119 (240)
                      .+||+....+..+ +..+++    -.|++++|+|.+.-+|.=+..++...|+.|+..-+. ..++..             
T Consensus       136 ~~PcTp~avi~lL-~~~~i~----l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T~~l~~~-------------  197 (284)
T PRK14170        136 FVPCTPAGIIELI-KSTGTQ----IEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQV-------------  197 (284)
T ss_pred             CCCCCHHHHHHHH-HHhCCC----CCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHH-------------
Confidence            4577766666666 555553    389999999988899999999999999988866542 222111             


Q ss_pred             CccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248          120 PDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       120 ~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                           .     +..|+++-++|.+.+ ---+.+++|..++.+|..
T Consensus       198 -----~-----~~ADIvI~AvG~~~~-i~~~~vk~GavVIDvGin  231 (284)
T PRK14170        198 -----A-----KEADILVVATGLAKF-VKKDYIKPGAIVIDVGMD  231 (284)
T ss_pred             -----H-----hhCCEEEEecCCcCc-cCHHHcCCCCEEEEccCc
Confidence                 0     236788888886553 223567888888888854

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=94.77  E-value=0.017  Score=46.43  Aligned_cols=93  Identities=18%  Similarity=0.072  Sum_probs=53.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHHHH----HhcCCC-EEEeCCCCccccccCCCCCcccEEE
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNIEFV----KSLGAD-EVLDYKTPDGAALKSPSGRKYDAVI  137 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~~~----~~~g~~-~v~~~~~~~~~~~~~~~~~~~d~v~  137 (240)
                      .++++||=+|  .|.|.+++..++ +|+ +|++++-+ ...+.+    +..|.. .+.-...      ......+||+|+
T Consensus       160 ~~g~~vLDvG--~GSGILaiaA~k-lGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~------~~~~~~~~dlvv  230 (295)
T PF06325_consen  160 KPGKRVLDVG--CGSGILAIAAAK-LGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLS------EDLVEGKFDLVV  230 (295)
T ss_dssp             STTSEEEEES---TTSHHHHHHHH-TTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCT------SCTCCS-EEEEE
T ss_pred             cCCCEEEEeC--CcHHHHHHHHHH-cCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEe------cccccccCCEEE
Confidence            6889998887  335655555555 588 89999953 333333    334422 2211111      111227799999


Q ss_pred             eCCCCCC----ccccccCCCCCcEEEEeCCCch
Q 045248          138 HCATGIP----WSTFEPNLGTNGKVIDITPGPS  166 (240)
Q Consensus       138 d~~g~~~----~~~~~~~l~~~G~iv~~g~~~~  166 (240)
                      -.+-...    +....+.++++|.+++.|....
T Consensus       231 ANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~  263 (295)
T PF06325_consen  231 ANILADVLLELAPDIASLLKPGGYLILSGILEE  263 (295)
T ss_dssp             EES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGG
T ss_pred             ECCCHHHHHHHHHHHHHhhCCCCEEEEccccHH
Confidence            7665432    4455667899999999886543

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>TIGR00477 tehB tellurite resistance protein TehB

Probab=94.77  E-value=0.044  Score=41.38  Aligned_cols=91  Identities=15%  Similarity=0.070  Sum_probs=52.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH----hcCCCEEEeCCCCccccccCCCCCcccEEEeC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK----SLGADEVLDYKTPDGAALKSPSGRKYDAVIHC  139 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~----~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~  139 (240)
                      .++.+||-.|  .|.|..+..+++ .|.+|++++.+ ...+.++    +.+..  +.....+.....  -...+|+|+.+
T Consensus        29 ~~~~~vLDiG--cG~G~~a~~la~-~g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~--~~~~fD~I~~~  101 (195)
T TIGR00477        29 VAPCKTLDLG--CGQGRNSLYLSL-AGYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAA--LNEDYDFIFST  101 (195)
T ss_pred             CCCCcEEEeC--CCCCHHHHHHHH-CCCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcc--ccCCCCEEEEe
Confidence            4557888888  356777777776 58899999954 4444442    23322  111111100001  12469999865


Q ss_pred             CC-----C----CCccccccCCCCCcEEEEeC
Q 045248          140 AT-----G----IPWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       140 ~g-----~----~~~~~~~~~l~~~G~iv~~g  162 (240)
                      .-     .    ..+..+.+.|+++|.++.+.
T Consensus       102 ~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~  133 (195)
T TIGR00477       102 VVFMFLQAGRVPEIIANMQAHTRPGGYNLIVA  133 (195)
T ss_pred             cccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence            32     1    13667778899999965553

Part of a tellurite-reducing operon tehA and tehB

>PRK07574 formate dehydrogenase; Provisional

Probab=94.76  E-value=0.13  Score=43.08  Aligned_cols=88  Identities=11%  Similarity=0.108  Sum_probs=57.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcc-cHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGAR-NIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP  144 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~-~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~  144 (240)
                      .|++|.|+| .|.+|....+.++.+|.+|++..+.. ..+..+.+|...   .... ...+     ...|+|+-++....
T Consensus       191 ~gktVGIvG-~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~---~~~l-~ell-----~~aDvV~l~lPlt~  260 (385)
T PRK07574        191 EGMTVGIVG-AGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTY---HVSF-DSLV-----SVCDVVTIHCPLHP  260 (385)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCcee---cCCH-HHHh-----hcCCEEEEcCCCCH
Confidence            678999999 99999999999999999999998653 334344455321   1110 1111     24678877776311


Q ss_pred             -----c-cccccCCCCCcEEEEeCC
Q 045248          145 -----W-STFEPNLGTNGKVIDITP  163 (240)
Q Consensus       145 -----~-~~~~~~l~~~G~iv~~g~  163 (240)
                           + ...+..++++..++.++-
T Consensus       261 ~T~~li~~~~l~~mk~ga~lIN~aR  285 (385)
T PRK07574        261 ETEHLFDADVLSRMKRGSYLVNTAR  285 (385)
T ss_pred             HHHHHhCHHHHhcCCCCcEEEECCC
Confidence                 1 245667788877777753

>PRK07340 ornithine cyclodeaminase; Validated

Probab=94.75  E-value=0.37  Score=39.09  Aligned_cols=90  Identities=11%  Similarity=-0.025  Sum_probs=57.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHH-hCCC-EEEEEeCc-cc-HHHHHhcCCC--EEEeCCCCccccccCCCCCcccEEEe
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAK-LGNT-HVTASCGA-RN-IEFVKSLGAD--EVLDYKTPDGAALKSPSGRKYDAVIH  138 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~-~~g~-~v~~~~~~-~~-~~~~~~~g~~--~v~~~~~~~~~~~~~~~~~~~d~v~d  138 (240)
                      ....+++|+| +|..|.+.++.+. .++. +|.+..++ ++ .+++++++..  .+. ..+ ....+     .+.|+|+.
T Consensus       123 ~~~~~v~IiG-aG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~-~~~-~~~av-----~~aDiVit  194 (304)
T PRK07340        123 APPGDLLLIG-TGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAE-PLD-GEAIP-----EAVDLVVT  194 (304)
T ss_pred             CCCCEEEEEC-CcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeE-ECC-HHHHh-----hcCCEEEE
Confidence            4678999999 8999999888776 5777 56666654 44 3444555321  111 111 01112     36999999


Q ss_pred             CCCCCC-ccccccCCCCCcEEEEeCCC
Q 045248          139 CATGIP-WSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       139 ~~g~~~-~~~~~~~l~~~G~iv~~g~~  164 (240)
                      |+.+.. +-..  .+++|-++..+|..
T Consensus       195 aT~s~~Pl~~~--~~~~g~hi~~iGs~  219 (304)
T PRK07340        195 ATTSRTPVYPE--AARAGRLVVAVGAF  219 (304)
T ss_pred             ccCCCCceeCc--cCCCCCEEEecCCC
Confidence            998633 3333  37899999999954

>PRK07102 short chain dehydrogenase; Provisional

Probab=94.75  E-value=0.083  Score=41.07  Aligned_cols=33  Identities=12%  Similarity=0.190  Sum_probs=29.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ++++|.||+|++|...++.+...|++|+++.++
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~   34 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGARLYLAARD   34 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCC
Confidence            579999999999999999888899999999864

>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]

Probab=94.75  E-value=0.16  Score=42.51  Aligned_cols=36  Identities=25%  Similarity=0.286  Sum_probs=33.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .....|+|.||+|.+|+..++.++.+|+.|.+..++
T Consensus        77 ~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd  112 (411)
T KOG1203|consen   77 KKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRD  112 (411)
T ss_pred             CCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccC
Confidence            566789999999999999999999999999999986

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=94.74  E-value=0.041  Score=38.26  Aligned_cols=89  Identities=13%  Similarity=0.018  Sum_probs=48.3

Q ss_pred             eEEEEcCCchHHHHHHHHHHh-CCCEEEEEe-Cccc----HHHHHhcC--CCEEEeCCCCccccccCCCCCcccEEEeCC
Q 045248           69 NILVTAASGGVGHYAVQLAKL-GNTHVTASC-GARN----IEFVKSLG--ADEVLDYKTPDGAALKSPSGRKYDAVIHCA  140 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~-~g~~v~~~~-~~~~----~~~~~~~g--~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~  140 (240)
                      +|.|+|.+|-+|..+++.+.. .+.++.+.. +..+    .+..+-.|  ...+..+.     .++... ..+|++||++
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~-----~l~~~~-~~~DVvIDfT   75 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTD-----DLEELL-EEADVVIDFT   75 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS------HHHHT-TH-SEEEEES
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccch-----hHHHhc-ccCCEEEEcC
Confidence            689999779999999999997 666877666 3321    11111111  11111111     111111 2289999999


Q ss_pred             CCCCccccccCCCCCcEEEEeCC
Q 045248          141 TGIPWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       141 g~~~~~~~~~~l~~~G~iv~~g~  163 (240)
                      ..+.....++.+...|.-+.+|.
T Consensus        76 ~p~~~~~~~~~~~~~g~~~ViGT   98 (124)
T PF01113_consen   76 NPDAVYDNLEYALKHGVPLVIGT   98 (124)
T ss_dssp             -HHHHHHHHHHHHHHT-EEEEE-
T ss_pred             ChHHhHHHHHHHHhCCCCEEEEC
Confidence            65555555555555576666654

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PLN02244 tocopherol O-methyltransferase

Probab=94.73  E-value=0.082  Score=43.60  Aligned_cols=95  Identities=16%  Similarity=0.204  Sum_probs=57.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH----hcCCCEEEeCCCCccccccCCCCCcccEEEeC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK----SLGADEVLDYKTPDGAALKSPSGRKYDAVIHC  139 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~----~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~  139 (240)
                      +++++||=+| + |.|..+..+++..|++|++++.+ ...+.++    +.|...-+.....+.... ....+.||+|+-.
T Consensus       117 ~~~~~VLDiG-C-G~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~~~~FD~V~s~  193 (340)
T PLN02244        117 KRPKRIVDVG-C-GIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-PFEDGQFDLVWSM  193 (340)
T ss_pred             CCCCeEEEec-C-CCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-CCCCCCccEEEEC
Confidence            4678898887 3 45667778888889999999954 4444443    334321111111111111 1123579999864


Q ss_pred             CCC-------CCccccccCCCCCcEEEEeC
Q 045248          140 ATG-------IPWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       140 ~g~-------~~~~~~~~~l~~~G~iv~~g  162 (240)
                      -..       ..+..+.+.|+|||+++...
T Consensus       194 ~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~  223 (340)
T PLN02244        194 ESGEHMPDKRKFVQELARVAAPGGRIIIVT  223 (340)
T ss_pred             CchhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            331       12567788999999998764

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=94.71  E-value=0.11  Score=46.35  Aligned_cols=93  Identities=10%  Similarity=0.120  Sum_probs=67.1

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC-
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP-  144 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~-  144 (240)
                      .+.++|.| .|.+|...++.++..|.++++++.+ ++.+.+++.|.. ++.-+..+....+..+-+..|.++-+.+++. 
T Consensus       400 ~~~vII~G-~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~-v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~  477 (601)
T PRK03659        400 KPQVIIVG-FGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYK-VYYGDATQLELLRAAGAEKAEAIVITCNEPED  477 (601)
T ss_pred             cCCEEEec-CchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCe-EEEeeCCCHHHHHhcCCccCCEEEEEeCCHHH
Confidence            46899999 9999999999999999999999975 788889998864 4433333344455555567899999998743 


Q ss_pred             ---ccccccCCCCCcEEEEe
Q 045248          145 ---WSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       145 ---~~~~~~~l~~~G~iv~~  161 (240)
                         .-...+...|.-+++.-
T Consensus       478 n~~i~~~~r~~~p~~~IiaR  497 (601)
T PRK03659        478 TMKIVELCQQHFPHLHILAR  497 (601)
T ss_pred             HHHHHHHHHHHCCCCeEEEE
Confidence               11234445666666644

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=94.71  E-value=0.097  Score=41.21  Aligned_cols=34  Identities=12%  Similarity=0.278  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      .+++++|+||++++|..++..+...|++|+.+.+
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~   40 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYN   40 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence            6789999999999999999988899999887764

>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=94.71  E-value=0.16  Score=37.74  Aligned_cols=32  Identities=16%  Similarity=0.222  Sum_probs=27.2

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNT-HVTASCGA  100 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~  100 (240)
                      ++||+|+.|++|..+++.+...|. +++.+.++
T Consensus         2 tylitGG~gglg~~la~~La~~~~~~~il~~r~   34 (181)
T PF08659_consen    2 TYLITGGLGGLGQSLARWLAERGARRLILLGRS   34 (181)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESS
T ss_pred             EEEEECCccHHHHHHHHHHHHcCCCEEEEeccC
Confidence            589999999999999988888877 88888854

It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....

>PLN03075 nicotianamine synthase; Provisional

Probab=94.70  E-value=0.2  Score=40.29  Aligned_cols=96  Identities=16%  Similarity=0.141  Sum_probs=60.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCC--CEEEEEeCc-ccHHHHHhc-----CCCEEEeCCCCccccccCCCCCcccEE
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGN--THVTASCGA-RNIEFVKSL-----GADEVLDYKTPDGAALKSPSGRKYDAV  136 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g--~~v~~~~~~-~~~~~~~~~-----g~~~v~~~~~~~~~~~~~~~~~~~d~v  136 (240)
                      .+.++|+-+| +|+.|+.++-+++.+.  .+++.++.+ +..+.+++.     |...-+.+...+.... .....+||+|
T Consensus       122 ~~p~~VldIG-cGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~-~~~l~~FDlV  199 (296)
T PLN03075        122 GVPTKVAFVG-SGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDV-TESLKEYDVV  199 (296)
T ss_pred             CCCCEEEEEC-CCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhc-ccccCCcCEE
Confidence            3668999999 9999988887776443  489999964 555555533     2222122222221111 1113579999


Q ss_pred             EeCC------CC--CCccccccCCCCCcEEEEeC
Q 045248          137 IHCA------TG--IPWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       137 ~d~~------g~--~~~~~~~~~l~~~G~iv~~g  162 (240)
                      +-.+      ..  ..++...+.|++||.++.-.
T Consensus       200 F~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        200 FLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             EEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            8775      11  12778888999999987654

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=94.70  E-value=0.19  Score=40.34  Aligned_cols=58  Identities=17%  Similarity=0.209  Sum_probs=45.9

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC---c-ccHHHHHhcCCCEEEeCC
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG---A-RNIEFVKSLGADEVLDYK  118 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~---~-~~~~~~~~~g~~~v~~~~  118 (240)
                      ....+     ++|. .+|-+.+|+.|.++..+++.+|++++.+.+   + ++.+.++.+|+..++...
T Consensus        55 ~~G~l-----~pG~-tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~  116 (300)
T COG0031          55 KRGLL-----KPGG-TIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPG  116 (300)
T ss_pred             HcCCC-----CCCC-EEEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCC
Confidence            44556     7888 557777999999999999999998777774   2 688899999997666544

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=94.68  E-value=0.12  Score=46.36  Aligned_cols=92  Identities=15%  Similarity=0.163  Sum_probs=65.4

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC-
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP-  144 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~-  144 (240)
                      .++|+|.| .|.+|+...+.++..|.++++++.+ ++.+.+++.|.. ++.-+..+...++..+-+.+|.++-+++++. 
T Consensus       400 ~~~vII~G-~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~-v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~  477 (621)
T PRK03562        400 QPRVIIAG-FGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMK-VFYGDATRMDLLESAGAAKAEVLINAIDDPQT  477 (621)
T ss_pred             cCcEEEEe-cChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCe-EEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHH
Confidence            47899999 9999999999999999999999965 788889888864 4433333334445555567899998888633 


Q ss_pred             ---ccccccCCCCCcEEEE
Q 045248          145 ---WSTFEPNLGTNGKVID  160 (240)
Q Consensus       145 ---~~~~~~~l~~~G~iv~  160 (240)
                         .-...+.+.|+-+++.
T Consensus       478 n~~i~~~ar~~~p~~~iia  496 (621)
T PRK03562        478 SLQLVELVKEHFPHLQIIA  496 (621)
T ss_pred             HHHHHHHHHHhCCCCeEEE
Confidence               2233344455655543

>PRK06123 short chain dehydrogenase; Provisional

Probab=94.67  E-value=0.15  Score=39.62  Aligned_cols=32  Identities=28%  Similarity=0.334  Sum_probs=27.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEe
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASC   98 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~   98 (240)
                      ++++||+|++|++|..+++.+...|++|+...
T Consensus         2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~   33 (248)
T PRK06123          2 RKVMIITGASRGIGAATALLAAERGYAVCLNY   33 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEec
Confidence            45799999999999999988888999877665

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=94.66  E-value=0.12  Score=42.64  Aligned_cols=73  Identities=11%  Similarity=0.068  Sum_probs=42.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhC-CCEEEEEeCc-ccHHHHHhcCCCEEEeCCCC-ccccccCCCCCcccEEEeCCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLG-NTHVTASCGA-RNIEFVKSLGADEVLDYKTP-DGAALKSPSGRKYDAVIHCAT  141 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~-g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~-~~~~~~~~~~~~~d~v~d~~g  141 (240)
                      .+|||+||+|-+|..+++.+... |.+|+++++. ++...+........+..+-. +...+... -.++|+||.+++
T Consensus         2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~~~d~ViH~aa   77 (347)
T PRK11908          2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYH-VKKCDVILPLVA   77 (347)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHH-HcCCCEEEECcc
Confidence            36999999999999999888765 6899999864 33222211111122222111 11111111 136899999875

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.66  E-value=1.4  Score=35.38  Aligned_cols=37  Identities=11%  Similarity=0.062  Sum_probs=30.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF  105 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~  105 (240)
                      .+|.|+| +|.+|....+.+...|.+|+..+.+ +..+.
T Consensus         6 ~~V~ViG-aG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~   43 (286)
T PRK07819          6 QRVGVVG-AGQMGAGIAEVCARAGVDVLVFETTEELATA   43 (286)
T ss_pred             cEEEEEc-ccHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence            4799999 8999999888888889999999854 54443

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=94.66  E-value=0.21  Score=39.31  Aligned_cols=89  Identities=12%  Similarity=0.076  Sum_probs=57.9

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhC-CCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCC-
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLG-NTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCAT-  141 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~-g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g-  141 (240)
                      .++.+||=+| +| .|..+..+++.. +.+|++++.+ .-.+.+++.+.+. +..+   ....  .....||+|+-... 
T Consensus        28 ~~~~~vLDlG-cG-~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~-~~~d---~~~~--~~~~~fD~v~~~~~l   99 (255)
T PRK14103         28 ERARRVVDLG-CG-PGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDA-RTGD---VRDW--KPKPDTDVVVSNAAL   99 (255)
T ss_pred             CCCCEEEEEc-CC-CCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcE-EEcC---hhhC--CCCCCceEEEEehhh
Confidence            6788998888 44 367777787765 5699999964 5666676655432 2111   1111  12357999987553 


Q ss_pred             ----C--CCccccccCCCCCcEEEEe
Q 045248          142 ----G--IPWSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       142 ----~--~~~~~~~~~l~~~G~iv~~  161 (240)
                          .  ..+..+.+.|+|||.++..
T Consensus       100 ~~~~d~~~~l~~~~~~LkpgG~l~~~  125 (255)
T PRK14103        100 QWVPEHADLLVRWVDELAPGSWIAVQ  125 (255)
T ss_pred             hhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence                1  1266788889999998765

>PLN00203 glutamyl-tRNA reductase

Probab=94.66  E-value=0.27  Score=42.90  Aligned_cols=71  Identities=11%  Similarity=0.118  Sum_probs=47.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHHHH-HhcC-CC-EEEeCCCCccccccCCCCCcccEEEeCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNIEFV-KSLG-AD-EVLDYKTPDGAALKSPSGRKYDAVIHCA  140 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~~~-~~~g-~~-~v~~~~~~~~~~~~~~~~~~~d~v~d~~  140 (240)
                      .+.+|+|+| +|.+|.++++.+...|+ +|+++.++ ++.+.+ .+++ .. .+....+. ...+     .+.|+||.++
T Consensus       265 ~~kkVlVIG-AG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl-~~al-----~~aDVVIsAT  337 (519)
T PLN00203        265 ASARVLVIG-AGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEM-LACA-----AEADVVFTST  337 (519)
T ss_pred             CCCEEEEEe-CHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhH-HHHH-----hcCCEEEEcc
Confidence            478999999 79999999999999998 78888865 554444 4553 22 11111110 1111     4589999999


Q ss_pred             CCC
Q 045248          141 TGI  143 (240)
Q Consensus       141 g~~  143 (240)
                      +..
T Consensus       338 ~s~  340 (519)
T PLN00203        338 SSE  340 (519)
T ss_pred             CCC
Confidence            853

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=94.62  E-value=0.052  Score=37.50  Aligned_cols=90  Identities=20%  Similarity=0.162  Sum_probs=51.7

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCC-EEEEEeC-cc--cHHHHHhcC---CCEEEeCCCCccccccCCCCCcccEEEeCCC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNT-HVTASCG-AR--NIEFVKSLG---ADEVLDYKTPDGAALKSPSGRKYDAVIHCAT  141 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~-~~--~~~~~~~~g---~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g  141 (240)
                      +|.|+||+|-+|..+++++..+-. +++.+.+ +.  ...+...++   -..-+...+.+...+     .++|+||.|++
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~Dvvf~a~~   75 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL-----SDVDVVFLALP   75 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH-----TTESEEEE-SC
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh-----hcCCEEEecCc
Confidence            589999999999999999887654 7666663 32  122222222   001111111111111     57999999998


Q ss_pred             CCC-ccccccCCCCCcEEEEeCC
Q 045248          142 GIP-WSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       142 ~~~-~~~~~~~l~~~G~iv~~g~  163 (240)
                      ... .+..-..++++-+++..+.
T Consensus        76 ~~~~~~~~~~~~~~g~~ViD~s~   98 (121)
T PF01118_consen   76 HGASKELAPKLLKAGIKVIDLSG   98 (121)
T ss_dssp             HHHHHHHHHHHHHTTSEEEESSS
T ss_pred             hhHHHHHHHHHhhCCcEEEeCCH
Confidence            754 3333334566668887764

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=94.62  E-value=0.033  Score=44.74  Aligned_cols=32  Identities=31%  Similarity=0.310  Sum_probs=29.1

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      +|||+|++|-+|.++.+.++..|.+|+.+.+.
T Consensus         2 riLI~GasG~lG~~l~~~l~~~~~~v~~~~r~   33 (286)
T PF04321_consen    2 RILITGASGFLGSALARALKERGYEVIATSRS   33 (286)
T ss_dssp             EEEEETTTSHHHHHHHHHHTTTSEEEEEESTT
T ss_pred             EEEEECCCCHHHHHHHHHHhhCCCEEEEeCch
Confidence            69999999999999999999999999998644

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=94.60  E-value=0.13  Score=40.46  Aligned_cols=34  Identities=15%  Similarity=0.082  Sum_probs=29.2

Q ss_pred             CCCeEEEEcCC--chHHHHHHHHHHhCCCEEEEEeC
Q 045248           66 QQKNILVTAAS--GGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        66 ~g~~vlV~G~~--g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      .+++++|+|++  +++|.++++.+...|++|+.+.+
T Consensus         5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~   40 (258)
T PRK07370          5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYL   40 (258)
T ss_pred             CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEec
Confidence            57899999975  79999999998899999887753

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.59  E-value=0.1  Score=41.13  Aligned_cols=77  Identities=22%  Similarity=0.221  Sum_probs=47.8

Q ss_pred             CCCeEEEEcC--CchHHHHHHHHHHhCCCEEEEEeCcc---cHHHH-HhcCCC-EEE--eCCCCc--cccccC--CCCCc
Q 045248           66 QQKNILVTAA--SGGVGHYAVQLAKLGNTHVTASCGAR---NIEFV-KSLGAD-EVL--DYKTPD--GAALKS--PSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~--~g~vG~~~~~~a~~~g~~v~~~~~~~---~~~~~-~~~g~~-~v~--~~~~~~--~~~~~~--~~~~~  132 (240)
                      .+++++|+|+  ++++|.++++.+...|++|+.+.+++   ..+.+ ++++.. ..+  |..+..  ...++.  ....+
T Consensus         6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~g~   85 (256)
T PRK07889          6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREHVDG   85 (256)
T ss_pred             cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999998  78999999998889999999887542   22322 334421 122  222221  111111  11246


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.++|.
T Consensus        86 iD~li~nAG~   95 (256)
T PRK07889         86 LDGVVHSIGF   95 (256)
T ss_pred             CcEEEEcccc
Confidence            9999999873

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=94.58  E-value=0.16  Score=40.32  Aligned_cols=33  Identities=24%  Similarity=0.266  Sum_probs=29.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCG   99 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~   99 (240)
                      .+.+|+|+| .|++|..++..+...|. +++.++.
T Consensus        29 ~~s~VlVvG-~GGVGs~vae~Lar~GVg~itLiD~   62 (268)
T PRK15116         29 ADAHICVVG-IGGVGSWAAEALARTGIGAITLIDM   62 (268)
T ss_pred             cCCCEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeC
Confidence            567899999 99999999999999997 7777774

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.58  E-value=0.64  Score=37.43  Aligned_cols=95  Identities=16%  Similarity=0.081  Sum_probs=65.1

Q ss_pred             hhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCC
Q 045248           41 GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKT  119 (240)
Q Consensus        41 ~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~  119 (240)
                      ..||+....+..+ +..++.    -.|++++|+|.+.-+|.=+..++...|+.|+.+.+. ..++..             
T Consensus       137 ~~PcTp~aii~lL-~~~~i~----l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T~~l~~~-------------  198 (297)
T PRK14186        137 LRSCTPAGVMRLL-RSQQID----IAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRTQDLASI-------------  198 (297)
T ss_pred             CCCCCHHHHHHHH-HHhCCC----CCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHH-------------
Confidence            4577766666666 555553    389999999999999999999999999988777543 222211             


Q ss_pred             CccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248          120 PDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       120 ~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                           .     +..|+++-++|.+.+ ---+.+++|..++.+|..
T Consensus       199 -----~-----~~ADIvIsAvGkp~~-i~~~~ik~gavVIDvGin  232 (297)
T PRK14186        199 -----T-----READILVAAAGRPNL-IGAEMVKPGAVVVDVGIH  232 (297)
T ss_pred             -----H-----hhCCEEEEccCCcCc-cCHHHcCCCCEEEEeccc
Confidence                 0     236777777776543 223567788777777753

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=94.57  E-value=0.36  Score=38.83  Aligned_cols=34  Identities=9%  Similarity=0.133  Sum_probs=28.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~  100 (240)
                      ++++++|+| +||.+.+++..+...|+ +++++.++
T Consensus       123 ~~k~vlvlG-aGGaarAi~~~l~~~g~~~i~i~nRt  157 (288)
T PRK12749        123 KGKTMVLLG-AGGASTAIGAQGAIEGLKEIKLFNRR  157 (288)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            668999999 78889988877778898 78787775

>PRK10637 cysG siroheme synthase; Provisional

Probab=94.57  E-value=0.17  Score=43.48  Aligned_cols=92  Identities=11%  Similarity=0.086  Sum_probs=58.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc--ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA--RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~--~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      .+.+|||+| +|.++.-=++.+...|++|++++++  +....+.+.|....+. ++.....+     .++++||-+++.+
T Consensus        11 ~~~~vlvvG-gG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~-~~~~~~dl-----~~~~lv~~at~d~   83 (457)
T PRK10637         11 RDRDCLLVG-GGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVE-GPFDESLL-----DTCWLAIAATDDD   83 (457)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEe-CCCChHHh-----CCCEEEEECCCCH
Confidence            789999999 8999988777777899999988864  3444444444322221 22111112     4688999998875


Q ss_pred             Ccc-ccccCCCCCcEEEEeCCC
Q 045248          144 PWS-TFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       144 ~~~-~~~~~l~~~G~iv~~g~~  164 (240)
                      .++ +..+..+..|.++.....
T Consensus        84 ~~n~~i~~~a~~~~~lvN~~d~  105 (457)
T PRK10637         84 AVNQRVSEAAEARRIFCNVVDA  105 (457)
T ss_pred             HHhHHHHHHHHHcCcEEEECCC
Confidence            544 344444556777665543

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.57  E-value=0.64  Score=37.08  Aligned_cols=95  Identities=22%  Similarity=0.151  Sum_probs=64.9

Q ss_pred             hhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCC
Q 045248           41 GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKT  119 (240)
Q Consensus        41 ~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~  119 (240)
                      ..||+....+..+ +..++.    -.|++++|+|.+.-+|.=...++...|+.|+..-+. ..++..             
T Consensus       136 ~~PcTp~avi~lL-~~~~i~----l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~~l~~~-------------  197 (281)
T PRK14183        136 FVPCTPLGVMELL-EEYEID----VKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFTKDLKAH-------------  197 (281)
T ss_pred             CCCCcHHHHHHHH-HHcCCC----CCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCcCHHHH-------------
Confidence            4577766666666 555553    389999999988899999999999999988744332 222110             


Q ss_pred             CccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248          120 PDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       120 ~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                                -+..|+++-++|.+.+ ---+.+++|..++.+|..
T Consensus       198 ----------~~~ADIvV~AvGkp~~-i~~~~vk~gavvIDvGin  231 (281)
T PRK14183        198 ----------TKKADIVIVGVGKPNL-ITEDMVKEGAIVIDIGIN  231 (281)
T ss_pred             ----------HhhCCEEEEecCcccc-cCHHHcCCCcEEEEeecc
Confidence                      0347788888886553 224567888888888743

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=94.56  E-value=0.19  Score=43.01  Aligned_cols=36  Identities=22%  Similarity=0.114  Sum_probs=32.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .+..+|||+||+|-+|..++..+...|.+|+++++.
T Consensus       118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~  153 (436)
T PLN02166        118 RKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNF  153 (436)
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            456899999999999999999999999999999863

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=94.55  E-value=0.088  Score=41.53  Aligned_cols=35  Identities=29%  Similarity=0.246  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .+++++|+|++|++|.++++.+...|++|+.+.++
T Consensus         8 ~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~   42 (266)
T PRK06171          8 QGKIIIVTGGSSGIGLAIVKELLANGANVVNADIH   42 (266)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999999999999999999999999988854

>PLN02256 arogenate dehydrogenase

Probab=94.53  E-value=0.36  Score=39.13  Aligned_cols=90  Identities=14%  Similarity=0.235  Sum_probs=58.9

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP  144 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~  144 (240)
                      ..+.+|.|+| .|.+|......++..|.+|++.+++...+.++++|...   ..+. ....    ....|+|+-|+....
T Consensus        34 ~~~~kI~IIG-~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~---~~~~-~e~~----~~~aDvVilavp~~~  104 (304)
T PLN02256         34 SRKLKIGIVG-FGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSF---FRDP-DDFC----EEHPDVVLLCTSILS  104 (304)
T ss_pred             CCCCEEEEEe-eCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCee---eCCH-HHHh----hCCCCEEEEecCHHH
Confidence            5677899999 89999999998888898999888664445666777532   1111 1111    124789988887543


Q ss_pred             ccccc-----cCCCCCcEEEEeCC
Q 045248          145 WSTFE-----PNLGTNGKVIDITP  163 (240)
Q Consensus       145 ~~~~~-----~~l~~~G~iv~~g~  163 (240)
                      +...+     ..++++..++.++.
T Consensus       105 ~~~vl~~l~~~~l~~~~iviDv~S  128 (304)
T PLN02256        105 TEAVLRSLPLQRLKRSTLFVDVLS  128 (304)
T ss_pred             HHHHHHhhhhhccCCCCEEEecCC
Confidence            33322     33556666777765

>PRK08655 prephenate dehydrogenase; Provisional

Probab=94.52  E-value=0.16  Score=43.50  Aligned_cols=86  Identities=20%  Similarity=0.292  Sum_probs=54.5

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-cc-HHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC--
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RN-IEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP--  144 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~-~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~--  144 (240)
                      +|.|+||.|.+|.+++..++..|.+|++.+++ ++ .+.+.++|.. ..  .+ ....+     ...|+|+-|+....  
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~-~~--~~-~~e~~-----~~aDvVIlavp~~~~~   72 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVE-YA--ND-NIDAA-----KDADIVIISVPINVTE   72 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCe-ec--cC-HHHHh-----ccCCEEEEecCHHHHH
Confidence            58899878999999999999999999888865 44 3555667752 11  11 01111     23677777776432  


Q ss_pred             --ccccccCCCCCcEEEEeCC
Q 045248          145 --WSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       145 --~~~~~~~l~~~G~iv~~g~  163 (240)
                        +......++++..++.++.
T Consensus        73 ~vl~~l~~~l~~~~iViDvsS   93 (437)
T PRK08655         73 DVIKEVAPHVKEGSLLMDVTS   93 (437)
T ss_pred             HHHHHHHhhCCCCCEEEEccc
Confidence              3333444556666666664

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=94.52  E-value=0.67  Score=37.34  Aligned_cols=96  Identities=22%  Similarity=0.163  Sum_probs=67.5

Q ss_pred             hhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCC
Q 045248           40 SGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYK  118 (240)
Q Consensus        40 a~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~  118 (240)
                      ..+||+....+..+ +..++.    -.|++++|+|-+.-+|.=+..++...|+.|+.+-+. ..++..            
T Consensus       145 ~~~PcTp~avi~lL-~~~~i~----l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T~nl~~~------------  207 (299)
T PLN02516        145 LFLPCTPKGCLELL-SRSGIP----IKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRTPDPESI------------  207 (299)
T ss_pred             CCCCCCHHHHHHHH-HHhCCC----CCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHH------------
Confidence            35688777777677 555553    379999999988899999999999999988887643 222211            


Q ss_pred             CCccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248          119 TPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                            .     +..|+++-++|.+.+ ---+.+++|..++.+|..
T Consensus       208 ------~-----~~ADIvv~AvGk~~~-i~~~~vk~gavVIDvGin  241 (299)
T PLN02516        208 ------V-----READIVIAAAGQAMM-IKGDWIKPGAAVIDVGTN  241 (299)
T ss_pred             ------H-----hhCCEEEEcCCCcCc-cCHHHcCCCCEEEEeecc
Confidence                  0     346788888876432 224568888888888854

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=94.52  E-value=0.18  Score=44.62  Aligned_cols=74  Identities=9%  Similarity=0.056  Sum_probs=54.4

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      .+.++|.| .|.+|...++.++..|.++++++.+ ++.+.+++.|...++ -+..+....++.+-+.+|.++=++++
T Consensus       417 ~~hiiI~G-~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~-GD~~~~~~L~~a~i~~a~~viv~~~~  491 (558)
T PRK10669        417 CNHALLVG-YGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVL-GNAANEEIMQLAHLDCARWLLLTIPN  491 (558)
T ss_pred             CCCEEEEC-CChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEE-cCCCCHHHHHhcCccccCEEEEEcCC
Confidence            37889999 9999999999999999999999975 788888888865443 33333333444444567877766654

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=94.49  E-value=0.052  Score=42.44  Aligned_cols=107  Identities=15%  Similarity=0.161  Sum_probs=61.2

Q ss_pred             HHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC--EEEEEe-CcccHHHH----HhcCCCEE--EeCCCCccc
Q 045248           53 LTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT--HVTASC-GARNIEFV----KSLGADEV--LDYKTPDGA  123 (240)
Q Consensus        53 l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~-~~~~~~~~----~~~g~~~v--~~~~~~~~~  123 (240)
                      +...+++     .||++|+=.|  .|.|.+...+++..|-  +|+... ++++.+.+    +..|....  +...+-...
T Consensus        32 I~~~l~i-----~pG~~VlEaG--tGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~  104 (247)
T PF08704_consen   32 ILMRLDI-----RPGSRVLEAG--TGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEE  104 (247)
T ss_dssp             HHHHTT-------TT-EEEEE----TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG
T ss_pred             HHHHcCC-----CCCCEEEEec--CCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecc
Confidence            3356777     8999998877  3456667777776653  999999 45665555    45665322  211211111


Q ss_pred             cccCCCCCcccEEEeCCCC--CCccccccCC-CCCcEEEEeCCCch
Q 045248          124 ALKSPSGRKYDAVIHCATG--IPWSTFEPNL-GTNGKVIDITPGPS  166 (240)
Q Consensus       124 ~~~~~~~~~~d~v~d~~g~--~~~~~~~~~l-~~~G~iv~~g~~~~  166 (240)
                      -........+|.||==...  ..+..+.+.| +++|+++.+.+.-+
T Consensus       105 g~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ie  150 (247)
T PF08704_consen  105 GFDEELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSPCIE  150 (247)
T ss_dssp             --STT-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEESSHH
T ss_pred             cccccccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCHH
Confidence            1111112568888665554  3477888899 89999998876533

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=94.49  E-value=0.29  Score=39.70  Aligned_cols=93  Identities=6%  Similarity=0.060  Sum_probs=57.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHh-cCCCEEEeCCCCc-ccc--ccCCCCCcccEEEeCCCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKS-LGADEVLDYKTPD-GAA--LKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~-~g~~~v~~~~~~~-~~~--~~~~~~~~~d~v~d~~g~  142 (240)
                      .+|+|+| +|++|....-.+...|..|..+.+. ++.+..++ -|. .+.+..... ...  ........+|+||-|+=.
T Consensus         3 m~I~IiG-aGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl-~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~   80 (305)
T PRK05708          3 MTWHILG-AGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGL-TLVEQGQASLYAIPAETADAAEPIHRLLLACKA   80 (305)
T ss_pred             ceEEEEC-CCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCe-EEeeCCcceeeccCCCCcccccccCEEEEECCH
Confidence            4699999 9999998877777789999999975 56666654 343 222211111 000  001112478999999864


Q ss_pred             CC----ccccccCCCCCcEEEEeC
Q 045248          143 IP----WSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       143 ~~----~~~~~~~l~~~G~iv~~g  162 (240)
                      ..    +......+.++..++.+-
T Consensus        81 ~~~~~al~~l~~~l~~~t~vv~lQ  104 (305)
T PRK05708         81 YDAEPAVASLAHRLAPGAELLLLQ  104 (305)
T ss_pred             HhHHHHHHHHHhhCCCCCEEEEEe
Confidence            33    444555667778777664

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=94.49  E-value=0.14  Score=41.51  Aligned_cols=76  Identities=22%  Similarity=0.312  Sum_probs=50.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-cc---HHHHHhcCC-C---EEEeCCCCccccccCCCCCcccEEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RN---IEFVKSLGA-D---EVLDYKTPDGAALKSPSGRKYDAVI  137 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~---~~~~~~~g~-~---~v~~~~~~~~~~~~~~~~~~~d~v~  137 (240)
                      .+..|+|+||+|=+|..++..+-.+|++|.+++|+ +.   .+.++++.. .   .++..+-.+...+.. .-.|.|.||
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~-ai~gcdgVf   83 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDK-AIDGCDGVF   83 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHH-HHhCCCEEE
Confidence            67899999999999999999999999999999974 33   345666651 1   222111111111110 114688998


Q ss_pred             eCCCC
Q 045248          138 HCATG  142 (240)
Q Consensus       138 d~~g~  142 (240)
                      -++..
T Consensus        84 H~Asp   88 (327)
T KOG1502|consen   84 HTASP   88 (327)
T ss_pred             EeCcc
Confidence            88864

>PLN02778 3,5-epimerase/4-reductase

Probab=94.48  E-value=0.25  Score=39.91  Aligned_cols=52  Identities=13%  Similarity=0.208  Sum_probs=38.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHH----HHHhcCCCEEEe
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIE----FVKSLGADEVLD  116 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~----~~~~~g~~~v~~  116 (240)
                      ....+|||+||+|-+|..+++.+...|.+|+..... ...+    .+++.+++.|++
T Consensus         7 ~~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~~~~~~~~~v~~~l~~~~~D~ViH   63 (298)
T PLN02778          7 SATLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGSGRLENRASLEADIDAVKPTHVFN   63 (298)
T ss_pred             CCCCeEEEECCCCHHHHHHHHHHHhCCCEEEEecCccCCHHHHHHHHHhcCCCEEEE
Confidence            355789999999999999999999999988755432 2322    234556777774

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=94.45  E-value=0.18  Score=45.54  Aligned_cols=76  Identities=17%  Similarity=0.197  Sum_probs=49.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCccc----------------------HHHHHhcCCCEEEeCCCCcc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARN----------------------IEFVKSLGADEVLDYKTPDG  122 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~----------------------~~~~~~~g~~~v~~~~~~~~  122 (240)
                      ..+++|+|+| +|+.|+.+...+...|.+|+++...++                      .+.++++|.+..++..-...
T Consensus       191 ~~~k~VaIIG-aGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~d  269 (652)
T PRK12814        191 KSGKKVAIIG-AGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRD  269 (652)
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCc
Confidence            4678999999 899999999999999999988875321                      34456777654333211000


Q ss_pred             ccccCCCCCcccEEEeCCCC
Q 045248          123 AALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus       123 ~~~~~~~~~~~d~v~d~~g~  142 (240)
                      ...... ...+|.||-++|.
T Consensus       270 v~~~~~-~~~~DaVilAtGa  288 (652)
T PRK12814        270 ITLEEL-QKEFDAVLLAVGA  288 (652)
T ss_pred             cCHHHH-HhhcCEEEEEcCC
Confidence            001111 1248999999885

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=94.45  E-value=0.17  Score=40.43  Aligned_cols=87  Identities=16%  Similarity=0.004  Sum_probs=57.0

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC---
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP---  144 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~---  144 (240)
                      +|.|+| .|.+|......++..|.+|++.+++ ++.+.+.+.|......   .+...     -...|+||-|+....   
T Consensus         2 ~I~IIG-~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~---~~~~~-----~~~aDlVilavp~~~~~~   72 (279)
T PRK07417          2 KIGIVG-LGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEAS---TDLSL-----LKDCDLVILALPIGLLLP   72 (279)
T ss_pred             eEEEEe-ecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCccccc---CCHhH-----hcCCCEEEEcCCHHHHHH
Confidence            588999 9999999888888889999999865 6777777777422111   11111     135799999997433   


Q ss_pred             -ccccccCCCCCcEEEEeCCC
Q 045248          145 -WSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       145 -~~~~~~~l~~~G~iv~~g~~  164 (240)
                       +......++++..+..++..
T Consensus        73 ~~~~l~~~l~~~~ii~d~~Sv   93 (279)
T PRK07417         73 PSEQLIPALPPEAIVTDVGSV   93 (279)
T ss_pred             HHHHHHHhCCCCcEEEeCcch
Confidence             33344455555555555543

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=94.43  E-value=0.11  Score=42.32  Aligned_cols=76  Identities=30%  Similarity=0.442  Sum_probs=47.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCC-CEEEEEeCc-ccHHHH-HhcC---CC-EEE--eCCCCc--cccccCC--CCCcc
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGN-THVTASCGA-RNIEFV-KSLG---AD-EVL--DYKTPD--GAALKSP--SGRKY  133 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g-~~v~~~~~~-~~~~~~-~~~g---~~-~v~--~~~~~~--~~~~~~~--~~~~~  133 (240)
                      +++++|+|+++++|..+++.+...| ++|+.++++ ++.+.+ ++++   .. ..+  |..+.+  ...+...  ...++
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i   82 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGRPL   82 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence            5789999999999999998888889 899998865 433322 3332   11 122  222221  1111111  12469


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |++|.++|.
T Consensus        83 D~lI~nAG~   91 (314)
T TIGR01289        83 DALVCNAAV   91 (314)
T ss_pred             CEEEECCCc
Confidence            999999873

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=94.41  E-value=0.13  Score=46.51  Aligned_cols=36  Identities=14%  Similarity=0.101  Sum_probs=31.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhC-CCEEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLG-NTHVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~-g~~v~~~~~~  100 (240)
                      +++.+|||+||+|-+|..+++.+... |.+|+++++.
T Consensus       313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~  349 (660)
T PRK08125        313 KRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIG  349 (660)
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCC
Confidence            57889999999999999999887765 6899999864

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=94.41  E-value=0.4  Score=38.57  Aligned_cols=97  Identities=15%  Similarity=0.108  Sum_probs=58.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-c----cHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEe
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-R----NIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIH  138 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~----~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d  138 (240)
                      ++++++|=+|  .|.|.+++..+ ..|+ +|++++-+ -    .++.++..+.....  ............++.||+|+-
T Consensus       161 ~~g~~vlDvG--cGSGILaIAa~-kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~--~~~~~~~~~~~~~~~~DvIVA  235 (300)
T COG2264         161 KKGKTVLDVG--CGSGILAIAAA-KLGAKKVVGVDIDPQAVEAARENARLNGVELLV--QAKGFLLLEVPENGPFDVIVA  235 (300)
T ss_pred             cCCCEEEEec--CChhHHHHHHH-HcCCceEEEecCCHHHHHHHHHHHHHcCCchhh--hcccccchhhcccCcccEEEe
Confidence            6889998888  34566555544 5677 89999953 2    34444455544211  011111112223368999987


Q ss_pred             CCCCC----CccccccCCCCCcEEEEeCCCch
Q 045248          139 CATGI----PWSTFEPNLGTNGKVIDITPGPS  166 (240)
Q Consensus       139 ~~g~~----~~~~~~~~l~~~G~iv~~g~~~~  166 (240)
                      .+=..    ...+..+.++|+|.+++.|-..+
T Consensus       236 NILA~vl~~La~~~~~~lkpgg~lIlSGIl~~  267 (300)
T COG2264         236 NILAEVLVELAPDIKRLLKPGGRLILSGILED  267 (300)
T ss_pred             hhhHHHHHHHHHHHHHHcCCCceEEEEeehHh
Confidence            66322    25567778999999999996543

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=94.40  E-value=0.13  Score=40.38  Aligned_cols=34  Identities=18%  Similarity=0.209  Sum_probs=30.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      .+++++|+||+|++|..+++.+...|++|+.+.+
T Consensus         6 ~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~   39 (261)
T PRK08936          6 EGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYR   39 (261)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence            6789999999999999999999999998887765

>PRK09135 pteridine reductase; Provisional

Probab=94.39  E-value=0.096  Score=40.68  Aligned_cols=35  Identities=14%  Similarity=0.139  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .++++||+|++|++|..+++.+...|++|+.+++.
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~   39 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHAAGYRVAIHYHR   39 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            56889999999999999998888899999999863

>PRK06924 short chain dehydrogenase; Provisional

Probab=94.39  E-value=0.086  Score=41.13  Aligned_cols=33  Identities=21%  Similarity=0.307  Sum_probs=29.7

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ++++|+||+|++|..+++.+...|++|+.+.+.
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~   34 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRT   34 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCC
Confidence            479999999999999999998899999998864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	240
2vn8_A	375	Crystal Structure Of Human Reticulon 4 Interacting		4e-18
3tqh_A	321	Structure Of The Quinone Oxidoreductase From Coxiel		1e-16
2eih_A	343	Crystal Structure Of Nad-Dependent Alcohol Dehydrog		7e-15
2c0c_A	362	Structure Of The Mgc45594 Gene Product Length = 362		1e-12
2wek_A	341	Crystal Structure Of The Human Mgc45594 Gene Produc		1e-12
2x7h_A	370	Crystal Structure Of The Human Mgc45594 Gene Produc		2e-12
1rjw_A	339	Crystal Structure Of Nad(+)-Dependent Alcohol Dehyd		7e-10
3pii_A	339	Crystal Structure Of Mutant Of Ht- Alcohol Dehydrog		1e-09
1yb5_A	351	Crystal Structure Of Human Zeta-crystallin With Bou		1e-09
3fbg_A	346	Crystal Structure Of A Putative Arginate Lyase From		2e-09
4dvj_A	363	Crystal Structure Of A Putative Zinc-Dependent Alco		7e-09
3hzz_A	467	2.4 Angstrom Crystal Structure Of Streptomyces Coll		2e-08
3krt_A	456	Crystal Structure Of Putative Crotonyl Coa Reductas		6e-08
4dup_A	353	Crystal Structure Of A Quinone Oxidoreductase From		8e-08
3uog_A	363	Crystal Structure Of Putative Alcohol Dehydrogenase		9e-08
4a0s_A	447	Structure Of The 2-Octenoyl-Coa Carboxylase Reducta		2e-07
1v3t_A	333	Crystal Structure Of Leukotriene B4 12- Hydroxydehy		2e-07
1h2b_A	359	Crystal Structure Of The Alcohol Dehydrogenase From		4e-07
1o89_A	345	Crystal Structure Of E. Coli K-12 Yhdh Length = 345		1e-06
2eer_A	347	Structural Study Of Project Id St2577 From Sulfolob		1e-06
2j8z_A	354	Crystal Structure Of Human P53 Inducible Oxidoreduc		1e-06
2oby_A	338	Crystal Structure Of Human P53 Inducible Oxidoreduc		1e-06
4eex_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		4e-06
3gaz_A	343	Crystal Structure Of An Alcohol Dehydrogenase Super		9e-06
4eez_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		9e-06
3jyl_A	325	Crystal Structures Of Pseudomonas Syringae Pv. Toma		1e-05
2y05_A	328	Crystal Structure Of Human Leukotriene B4 12-Hydrox		2e-05
1zsv_A	349	Crystal Structure Of Human Nadp-Dependent Leukotrie		2e-05
4hfj_A	351	X-ray Crystal Structure Of A Double Bond Reductase		2e-05
3b6z_A	371	Lovastatin Polyketide Enoyl Reductase (Lovc) Comple		3e-05
3gqv_A	371	Lovastatin Polyketide Enoyl Reductase (Lovc) Mutant		3e-05
3nx4_A	324	Crystal Structure Of The Yhdh Oxidoreductase From S		5e-05
1llu_A	342	The Ternary Complex Of Pseudomonas Aeruginosa Alcoh		5e-05
2j3h_A	345	Crystal Structure Of Arabidopsis Thaliana Double Bo		2e-04
1xa0_A	328	Crystal Structure Of Mcsg Target Apc35536 From Baci		3e-04
4b7c_A	336	Crystal Structure Of Hypothetical Protein Pa1648 Fr		3e-04
4eye_A	342	Crystal Structure Of A Probable Oxidoreductase From		5e-04

>pdb|2VN8|A Chain A, Crystal Structure Of Human Reticulon 4 Interacting Protein 1 In Complex With Nadph Length = 375

Iteration: 1
 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 111/248 (44%), Gaps = 30/248 (12%)
Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           G L+EF V   +    +P  ++  + + LP   LTA  A+ +  G+  D +   K +L+ 
Sbjct: 132 GTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLN-DKNCTGKRVLIL 190
Query: 74  AASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKT-----------PDG 122
            ASGGVG +A+Q+ K  + HVTA C     E V+ LGAD+V+DYK+           P  
Sbjct: 191 GASGGVGTFAIQVMKAWDAHVTAVCSQDASELVRKLGADDVIDYKSGSVEEQLKSLKPFD 250
Query: 123 AALKSPSG----------RKYDAVIHCATGIPWSTFEPNLGTNGKVID--ITPGPSAMLT 170
             L +  G          +K+    +     P+      LG    ++   +T G  A+  
Sbjct: 251 FILDNVGGSTETWAPDFLKKWSGATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSKALKH 310
Query: 171 FALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDG 230
           F  K + +          +     LD + +LV  GK++ VI    P SK  +A+ +   G
Sbjct: 311 F-WKGVHYRWA-----FFMASGPCLDDIAELVDAGKIRPVIEQTFPFSKVPEAFLKVERG 364
Query: 231 HATGKIIV 238
           HA GK ++
Sbjct: 365 HARGKTVI 372

>pdb|3TQH|A Chain A, Structure Of The Quinone Oxidoreductase From Coxiella Burnetii Length = 321

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 106/232 (45%), Gaps = 30/232 (12%)
Query: 17  AEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAAS 76
           AE+  A   + + +  ++S  + + LP AGLTA QAL Q A VK     Q   +L+ A +
Sbjct: 109 AEYVCASPDTIIQKLEKLSFLQAASLPTAGLTALQALNQ-AEVK-----QGDVVLIHAGA 162
Query: 77  GGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDG-AALKSPSGRKYDA 135
           GGVGH A+QLAK   T V  +   RN  F+K+LGA++ ++Y   D   A+ +P     D 
Sbjct: 163 GGVGHLAIQLAKQKGTTVITTASKRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVIDL 222
Query: 136 V--------IHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLL 187
           V        I C          P + T G+VI++           LK+            
Sbjct: 223 VGGDVGIQSIDCLKETGCIVSVPTI-TAGRVIEVAKQKHRRAFGLLKQFNI--------- 272
Query: 188 LIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVE 239
                E L +L KLV E KL+  I+    LS+A  A      GH  GK++ +
Sbjct: 273 -----EELHYLGKLVSEDKLRIEISRIFQLSEAVTAHELLETGHVRGKLVFK 319

>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase Length = 343

Iteration: 1
 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 115/254 (45%), Gaps = 33/254 (12%)
Query: 1   MCNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVK 60
           +C  ++I   H  G  AE+ V  E++   +P  +S  E + +P+  LTA Q +    GV+
Sbjct: 106 LCPRYQILGEHRHGTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVR 165
Query: 61  LDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARN-IEFVKSLGADEVLDYKT 119
                   ++LV AA  GV   A+Q+AKL    V A+ G+ + +   K+LGADE ++Y  
Sbjct: 166 -----PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADETVNYTH 220
Query: 120 PD--GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDI---TPGPSAMLTFA-- 172
           PD      +   G+  D V+   TG  +         NG  I I   + G    L FA  
Sbjct: 221 PDWPKEVRRLTGGKGADKVVD-HTGALYFEGVIKATANGGRIAIAGASSGYEGTLPFAHV 279
Query: 173 -LKKLTF------SKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWA 225
             ++L+       SK +L P+L            + V+EGKLK V+    PL  A +   
Sbjct: 280 FYRQLSILGSTMASKSRLFPIL------------RFVEEGKLKPVVGQVLPLEAAAEGHR 327
Query: 226 ESIDGHATGKIIVE 239
              +    GK++++
Sbjct: 328 LLEERRVFGKVVLQ 341

>pdb|2C0C|A Chain A, Structure Of The Mgc45594 Gene Product Length = 362

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 73/150 (48%), Gaps = 9/150 (6%)
Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           G  AE+ V   S  +A P      E   L V+G TA+ +L +     L G  + K +LVT
Sbjct: 118 GSFAEYTVVPAS--IATPVPSVKPEYLTLLVSGTTAYISLKE-----LGGLSEGKKVLVT 170
Query: 74  AASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKT-PDGAALKSPSGR 131
           AA+GG G +A+QL+K    HV  +C +     F+KSLG D  ++YKT P G  LK     
Sbjct: 171 AAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPE 230
Query: 132 KYDAVIHCATGIPWSTFEPNLGTNGKVIDI 161
             D V     G  +      L T G++I I
Sbjct: 231 GVDVVYESVGGAMFDLAVDALATKGRLIVI 260

>pdb|2WEK|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In Complex With Diclofenac Length = 341

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 73/150 (48%), Gaps = 9/150 (6%)
Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           G  AE+ V   S  +A P      E   L V+G TA+ +L +     L G  + K +LVT
Sbjct: 97  GSFAEYTVVPAS--IATPVPSVKPEYLTLLVSGTTAYISLKE-----LGGLSEGKKVLVT 149
Query: 74  AASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKT-PDGAALKSPSGR 131
           AA+GG G +A+QL+K    HV  +C +     F+KSLG D  ++YKT P G  LK     
Sbjct: 150 AAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPE 209
Query: 132 KYDAVIHCATGIPWSTFEPNLGTNGKVIDI 161
             D V     G  +      L T G++I I
Sbjct: 210 GVDVVYESVGGAMFDLAVDALATKGRLIVI 239

>pdb|2X7H|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In Complex With Fenoprofen Length = 370

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 73/150 (48%), Gaps = 9/150 (6%)
Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           G  AE+ V   S  +A P      E   L V+G TA+ +L +     L G  + K +LVT
Sbjct: 126 GSFAEYTVVPAS--IATPVPSVKPEYLTLLVSGTTAYISLKE-----LGGLSEGKKVLVT 178
Query: 74  AASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKT-PDGAALKSPSGR 131
           AA+GG G +A+QL+K    HV  +C +     F+KSLG D  ++YKT P G  LK     
Sbjct: 179 AAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPE 238
Query: 132 KYDAVIHCATGIPWSTFEPNLGTNGKVIDI 161
             D V     G  +      L T G++I I
Sbjct: 239 GVDVVYESVGGAMFDLAVDALATKGRLIVI 268

>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol Dehydrogenase From Bacillus Stearothermophilus Strain Lld-R Length = 339

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 103/227 (45%), Gaps = 12/227 (5%)
Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           GG AE+  A     V  P  +S  E + +  AG+T ++AL      K+ G+   + + + 
Sbjct: 118 GGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKAL------KVTGAKPGEWVAIY 171
Query: 74  AASGGVGHYAVQLAK-LGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAA-LKSPSGR 131
              GG+GH AVQ AK +G   V    G   +E  K LGAD V++    D A  +K   G 
Sbjct: 172 GI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGG 230
Query: 132 KYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPK 191
            + AV+   +   + +   ++   G  + +   P  M       +    K +    ++  
Sbjct: 231 VHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIGS--IVGT 288
Query: 192 RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIV 238
           R++L   ++   EGK+KT+I  + PL K  + +   + G   G++++
Sbjct: 289 RKDLQEALQFAAEGKVKTIIEVQ-PLEKINEVFDRMLKGQINGRVVL 334

>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase With Substrate Analogue Butyramide Length = 339

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 102/227 (44%), Gaps = 12/227 (5%)
Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           GG AE+  A     V  P  +S  E + +  AG+T ++AL      K+ G+   + + + 
Sbjct: 118 GGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKAL------KVTGAKPGEWVAIY 171
Query: 74  AASGGVGHYAVQLAK-LGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAA-LKSPSGR 131
              GG GH AVQ AK +G   V    G   +E  K LGAD V++    D A  +K   G 
Sbjct: 172 GI-GGFGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGG 230
Query: 132 KYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPK 191
            + AV+   +   + +   ++   G  + +   P  M       +    K +    ++  
Sbjct: 231 VHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIGS--IVGT 288
Query: 192 RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIV 238
           R++L   ++   EGK+KT+I  + PL K  + +   + G   G++++
Sbjct: 289 RKDLQEALQFAAEGKVKTIIEVQ-PLEKINEVFDRMLKGQINGRVVL 334

>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp Length = 351

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 108/234 (46%), Gaps = 16/234 (6%)
Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           GG AE+A+A + +    P ++   +G+ + +   TA++AL  SA VK       +++LV 
Sbjct: 123 GGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAG-----ESVLVH 177
Query: 74  AASGGVGHYAVQLAKLGNTHVTASCGARNIE-FVKSLGADEVLDYKTPDGA-ALKSPSGR 131
            ASGGVG  A Q+A+     +  + G    +  V   GA EV +++  +    +K   G 
Sbjct: 178 GASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGE 237
Query: 132 K-YDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIP 190
           K  D +I     +  S     L   G+VI +  G    +    +     +  ++ + L  
Sbjct: 238 KGIDIIIEMLANVNLSKDLSLLSHGGRVIVV--GSRGTIEINPRDTMAKESSIIGVTLFS 295
Query: 191 --KRENLDFLVKL---VKEGKLKTVINSKHPLSKAEDAWAESIDGH-ATGKIIV 238
             K E   +   L   ++ G LK VI S++PL K  +A    I G  ATGK+I+
Sbjct: 296 STKEEFQQYAAALQAGMEIGWLKPVIGSQYPLEKVAEAHENIIHGSGATGKMIL 349

>pdb|3FBG|A Chain A, Crystal Structure Of A Putative Arginate Lyase From Staphylococcus Haemolyticus Length = 346

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 13  GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQ-KNIL 71
            G  AE+ +  E      P  +SA +   LP+ G+TA++ L    G+  + +  + K +L
Sbjct: 96  NGSNAEYQLINERLVAKAPKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLL 155
Query: 72  VTAASGGVGHYAVQLAK-LGNTHVTASCGARNIEFVKSLGADEVLDYK 118
           +   +GGVG  A Q+AK  G   +T +     IE+ K +GAD VL++K
Sbjct: 156 IINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADIVLNHK 203

>pdb|4DVJ|A Chain A, Crystal Structure Of A Putative Zinc-Dependent Alcohol Dehydrogenase Protein From Rhizobium Etli Cfn 42 Length = 363

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 104/245 (42%), Gaps = 25/245 (10%)
Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           G  AEF +  E     +P  +  AE + LP+  +TA +A      V     G    IL+ 
Sbjct: 119 GTNAEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIV 178
Query: 74  AASGGVGHYAVQLAKLGNTHVTASCGAR--NIEFVKSLGADEVLDYKTPDGAALKSPSGR 131
             +GGVG  AVQ+A+        +  +R    E+VKSLGA  V+D+  P  A + +  G 
Sbjct: 179 GGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAA-LGL 237
Query: 132 KYDAVIHCATGIPWSTFEPN--LGTNGKVIDITPGPSAMLTFALKK--------LTFSKK 181
              A +   T       E    +   G+   I   PSA      K+        L F++ 
Sbjct: 238 GAPAFVFSTTHTDKHAAEIADLIAPQGRFCLID-DPSAFDIXLFKRKAVSIHHELXFTR- 295
Query: 182 QLVPLLLIPKREN----LDFLVKLVKEGKLKTVI-NSKHPLSKAEDAWAESI--DGHATG 234
              P    P        L+ + +LV EG+L+T + N   P++ A    A ++   G A G
Sbjct: 296 ---PXFGTPDXSEQGRLLNDVSRLVDEGRLRTTLTNRLSPINAANLKQAHALVESGTARG 352
Query: 235 KIIVE 239
           K+++E
Sbjct: 353 KVVIE 357

>pdb|3HZZ|A Chain A, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus Crotonyl Coa CarboxylaseREDUCTASE Length = 467

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 15/153 (9%)
Query: 12  NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNIL 71
           N GGLAE A+ K +  + +P  ++  E +   +   TA++ L    G  +    Q  N+L
Sbjct: 195 NFGGLAEIALVKTNQLMPKPKHLTWEEAAAPGLVNSTAYRQLVSRNGAAMK---QGDNVL 251
Query: 72  VTAASGGVGHYAVQLAKLGNTH-VTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSG 130
           +  ASGG+G YA Q A  G  + +      +  E  +S+GA+ ++D         ++  G
Sbjct: 252 IWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRSMGAEAIID---------RNAEG 302
Query: 131 RKYDAVIHCATGIPWSTFEPNLG--TNGKVIDI 161
            K+    H      W  F   +   T G+ IDI
Sbjct: 303 YKFWKDEHTQDPKEWKRFGKRIRELTGGEDIDI 335

>pdb|3KRT|A Chain A, Crystal Structure Of Putative Crotonyl Coa Reductase From Streptomyces Coelicolor A3(2) Length = 456

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 12  NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNIL 71
           N GGLAE A+ K +  + +P  +S  E +   +   TA++ L    G    G  Q  N+L
Sbjct: 177 NFGGLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGA---GMKQGDNVL 233
Query: 72  VTAASGGVGHYAVQLAKLGNTH-VTASCGARNIEFVKSLGADEVLD 116
           +  ASGG+G YA Q A  G  + +      +  E  +++GA+ ++D
Sbjct: 234 IWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAEAIID 279

>pdb|4DUP|A Chain A, Crystal Structure Of A Quinone Oxidoreductase From Rhizobium Etli Cfn 42 Length = 353

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 23/240 (9%)
Query: 12  NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNIL 71
           NGG  AE+ +      +  P    A + + LP    T    L Q AG+      + +++L
Sbjct: 118 NGGAYAEYCLLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQXAGLT-----EGESVL 172
Query: 72  VTAASGGVGHYAVQLAKLGNTHVTASCGAR-NIEFVKSLGADEVLDYKTPDGAA-LKSPS 129
           +   + G+G  A+QLA+     V A+ G+    E  + LGA   ++Y++ D AA +K+ +
Sbjct: 173 IHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAET 232
Query: 130 GRKYDAVIHCATGIPWSTFEPNLGTNGK-----VIDITPGPSA----MLTFALKKLTFSK 180
           G+  D ++     I  + FE N+ +  K     +I    G  A    +    +K+LT + 
Sbjct: 233 GQGVDIILDX---IGAAYFERNIASLAKDGCLSIIAFLGGAVAEKVNLSPIXVKRLTVTG 289
Query: 181 KQLVPLLLIPKRENLDFLVK----LVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKI 236
               P     KR   D L+     L++ G +  VI+         DA     +G   GK+
Sbjct: 290 STXRPRTAEEKRAIRDDLLSEVWPLLEAGTVAPVIHKVFAFEDVADAHRLLEEGSHVGKV 349

>pdb|3UOG|A Chain A, Crystal Structure Of Putative Alcohol Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 363

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 104/236 (44%), Gaps = 25/236 (10%)
Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           G L+E+ V  E   VA P  + AAE S LP AGLTA  AL +       G  +  + +V 
Sbjct: 142 GVLSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLTAWFALVEK------GHLRAGDRVVV 195
Query: 74  AASGGVGHYAVQLAKLGNTHVTASCGARN-IEFVKSLGADEVLDYKTPDGAA-LKSPSG- 130
             +GGV  + +Q+AK     V  +  +R  ++   +LGAD  ++    D    + + +G 
Sbjct: 196 QGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGD 255
Query: 131 RKYDAVIHCATGIPWSTFEPNLGTNGKVIDI-------TPGPSAMLTFALKKLTFSKKQL 183
           R  D ++  A G         +  +G++  I         GP   L          K  +
Sbjct: 256 RGADHILEIAGGAGLGQSLKAVAPDGRISVIGVLEGFEVSGPVGPLLL--------KSPV 307
Query: 184 VPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVE 239
           V  + +  R  L+ LV  V    LK VI+ ++  ++  +A A  +D    GK+++E
Sbjct: 308 VQGISVGHRRALEDLVGAVDRLGLKPVIDXRYKFTEVPEALAH-LDRGPFGKVVIE 362

>pdb|4A0S|A Chain A, Structure Of The 2-Octenoyl-Coa Carboxylase Reductase Cinf In Complex With Nadp And 2-Octenoyl-Coa Length = 447

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 12  NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNIL 71
           N GGLAE+ V + S  + +P+ ++  E +  P+   TA++ L    G ++    Q   +L
Sbjct: 169 NFGGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMK---QGDIVL 225
Query: 72  VTAASGGVGHYAVQLAKL-GNTHVTASCGARNIEFVKSLGADEVLD 116
           +  ASGG+G YA+Q  K  G   V     A+    V++LG D V++
Sbjct: 226 IWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVIN 271

>pdb|1V3T|A Chain A, Crystal Structure Of Leukotriene B4 12- Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase Length = 333

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 91/213 (42%), Gaps = 23/213 (10%)
Query: 41  GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA 100
           G+P  GLTA+  L +  GVK       + +LV+AA+G VG    Q+AKL    V  + G+
Sbjct: 127 GMP--GLTAYFGLLEVCGVK-----GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGS 179
Query: 101 -RNIEFVKSLGADEVLDYKTPDG--AALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGK 157
              I ++K +G D   +YKT +    ALK  S   YD       G   +T    +   GK
Sbjct: 180 DEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGK 239
Query: 158 VI------------DITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEG 205
           +              + PGPS   +   K+L      +       + + L  L+K V EG
Sbjct: 240 IAICGAISVYNRMDQLPPGPSPE-SIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEG 298
Query: 206 KLKTVINSKHPLSKAEDAWAESIDGHATGKIIV 238
           K++   +          A+ E ++G   GK +V
Sbjct: 299 KIQYHEHVTKGFENMPAAFIEMLNGANLGKAVV 331

>pdb|1H2B|A Chain A, Crystal Structure Of The Alcohol Dehydrogenase From The Hyperthermophilic Archaeon Aeropyrum Pernix At 1.65a Resolution Length = 359

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 99/234 (42%), Gaps = 16/234 (6%)
Query: 14  GGLAEFAVAKESSTVARPSEVSA---AEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNI 70
           GG AEF      S +  P ++S     E + L  AG+TA++A+ ++A     G+      
Sbjct: 135 GGFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGA-----Y 189
Query: 71  LVTAASGGVGHYAVQLAKLGN--THVTASCGARNIEFVKSLGADEVLD-YKTPDGAALKS 127
           +     GG+GH AVQL K+    T +        ++  + LGAD V+D  + P    ++ 
Sbjct: 190 VAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMEL 249
Query: 128 PSGRKYDAVIHCATGIPWSTFEPN-LGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPL 186
             GR  +  +          + P  LG  G++I +  G    L F   ++  S+      
Sbjct: 250 TRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIV--GYGGELRFPTIRVISSEVSFEG- 306
Query: 187 LLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP 240
            L+     L  LV L  +GK++  ++  H L +  D       G   G+ ++ P
Sbjct: 307 SLVGNYVELHELVTLALQGKVRVEVDI-HKLDEINDVLERLEKGEVLGRAVLIP 359

>pdb|1O89|A Chain A, Crystal Structure Of E. Coli K-12 Yhdh Length = 345

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 5   WRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALT--QSAGVKLD 62
           W +  +H  GGLAE A  K    VA P  + A +   +  AG TA   +   + AGV+  
Sbjct: 109 WGVGENH-WGGLAEQARVKGDWLVAMPQGLDARKAMIIGTAGFTAMLCVMALEDAGVR-- 165
Query: 63  GSGQQKNILVTAASGGVGHYAVQLA-KLGNTHVTASCGARNIEFVKSLGADEVL 115
              Q   I+VT ASGGVG  AV L  KLG   V  S      E++KSLGA  VL
Sbjct: 166 --PQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASRVL 217

>pdb|2EER|A Chain A, Structural Study Of Project Id St2577 From Sulfolobus Tokodaii Strain7 Length = 347

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 106/232 (45%), Gaps = 13/232 (5%)
Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           G  AE+ +      + +   +SA E + L  +G+T ++A+ +++   LD S   K ++V 
Sbjct: 124 GAYAEYVLVPHYKYLYKLRRLSAVEAAPLTCSGVTTYRAVRKAS---LDPS---KTLVVI 177
Query: 74  AASGGVGHYAVQLAKL--GNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAA--LKSPS 129
            A GG+G  A+Q+AK   G T +        +E  K  GAD V++  + D  +   +   
Sbjct: 178 GAGGGLGTMAIQIAKAVSGATIIGVDVREEALEAAKRAGADYVINASSQDPVSEIRRITQ 237
Query: 130 GRKYDAVIHCATGIPWSTFEPN-LGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLL 188
           G+  DAVI         +  P  L   GK + +     A L +    +T ++ Q +  L+
Sbjct: 238 GKGADAVIDLNNSEKTLSIYPYVLAKQGKYVMVGLF-GADLKYHAPLITLNEVQFIGSLV 296
Query: 189 IPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP 240
             + + L  +  L + GK+K ++     L +A +A     +  A G+ ++ P
Sbjct: 297 GNQSDFLGIM-SLAEAGKVKPMVTKTMKLEEANEAIDNLENFKAVGRQVLVP 347

>pdb|2J8Z|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase ( Tp53i3,Pig3) Length = 354

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 100/250 (40%), Gaps = 35/250 (14%)
Query: 13  GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILV 72
           GGG A++    E   +  P  ++  + + +P A LTA Q L     V+         +L+
Sbjct: 114 GGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAG-----DYVLI 168
Query: 73  TAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPD--GAALKSPS 129
            A   GVG  A+QL ++       + G+ + ++  + LGA    +YK  D   A LK   
Sbjct: 169 HAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFTK 228
Query: 130 GRKYDAVIHCATGIPWSTFEPNLGTNGKVI--------DITPGPSAMLTFALKKLTFSKK 181
           G   + ++ C  G  W      L  +G+ +        DI  GP         KL F + 
Sbjct: 229 GAGVNLILDCIGGSYWEKNVNCLALDGRWVLYGLMGGGDIN-GP------LFSKLLFKRG 281
Query: 182 QLVPLLLIPKRENL----------DFLVKLVKEG--KLKTVINSKHPLSKAEDAWAESID 229
            L+  LL  +                L     EG  +L  V++  +P+++ ++A      
Sbjct: 282 SLITSLLRSRDNKYKQMLVNAFTEQILPHFSTEGPQRLLPVLDRIYPVTEIQEAHKYMEA 341
Query: 230 GHATGKIIVE 239
               GKI++E
Sbjct: 342 NKNIGKIVLE 351

>pdb|2OBY|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase (Tp53i3,Pig3) Length = 338

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 100/250 (40%), Gaps = 35/250 (14%)
Query: 13  GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILV 72
           GGG A++    E   +  P  ++  + + +P A LTA Q L     V+         +L+
Sbjct: 98  GGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAG-----DYVLI 152
Query: 73  TAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPD--GAALKSPS 129
            A   GVG  A+QL ++       + G+ + ++  + LGA    +YK  D   A LK   
Sbjct: 153 HAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFTK 212
Query: 130 GRKYDAVIHCATGIPWSTFEPNLGTNGKVI--------DITPGPSAMLTFALKKLTFSKK 181
           G   + ++ C  G  W      L  +G+ +        DI  GP         KL F + 
Sbjct: 213 GAGVNLILDCIGGSYWEKNVNCLALDGRWVLYGLMGGGDIN-GP------LFSKLLFKRG 265
Query: 182 QLVPLLLIPKRENL----------DFLVKLVKEG--KLKTVINSKHPLSKAEDAWAESID 229
            L+  LL  +                L     EG  +L  V++  +P+++ ++A      
Sbjct: 266 SLITSLLRSRDNKYKQMLVNAFTEQILPHFSTEGPQRLLPVLDRIYPVTEIQEAHKYMEA 325
Query: 230 GHATGKIIVE 239
               GKI++E
Sbjct: 326 NKNIGKIVLE 335

>pdb|4EEX|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Length = 348

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 102/231 (44%), Gaps = 15/231 (6%)
Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           GG+AE A+      V  P  +   E S +  AG+T ++A+  S GVK  G  Q     V 
Sbjct: 117 GGMAEEAIVVADYAVKVPDGLDPIEASSITCAGVTTYKAIKVS-GVK-PGDWQ-----VI 169
Query: 74  AASGGVGHYAVQLAK--LGNTHVTASCGARNIEFVKSLGADEVLDYK--TPDGAALKSPS 129
             +GG+G+ A+Q AK   G   +        +   K +GAD +++     P     K   
Sbjct: 170 FGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVIINSGDVNPVDEIKKITG 229
Query: 130 GRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLL 188
           G    + I CA   I +     +L   GK++ +   P+  +T ++  + F   + V   L
Sbjct: 230 GLGVQSAIVCAVARIAFEQAVASLKPMGKMVAVAL-PNTEMTLSVPTVVFDGVE-VAGSL 287
Query: 189 IPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVE 239
           +  R +L    +   EGK+K ++ ++  L +  D   E   G   G+++++
Sbjct: 288 VGTRLDLAEAFQFGAEGKVKPIVATRK-LEEINDIIDEMKAGKIEGRMVID 337

>pdb|3GAZ|A Chain A, Crystal Structure Of An Alcohol Dehydrogenase Superfamily Protein From Novosphingobium Aromaticivorans Length = 343

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Query: 17  AEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAAS 76
           A+FA        ++P+ ++  + S LP+  +TA + L   A V+ DG    + +L+    
Sbjct: 106 AQFAAVDARLLASKPAALTXRQASVLPLVFITAWEGLVDRAQVQ-DG----QTVLIQGGG 160
Query: 77  GGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAV 136
           GGVGH A+Q+A      V A+    ++E+V+ LGA  +   + P+  A +  +G+ +D V
Sbjct: 161 GGVGHVAIQIALARGARVFATARGSDLEYVRDLGATPIDASREPEDYAAEHTAGQGFDLV 220

>pdb|4EEZ|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Variant Re1 Length = 348

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 101/231 (43%), Gaps = 15/231 (6%)
Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           GG+AE A+      V  P  +   E S +  AG+T ++A+  S GVK  G  Q     V 
Sbjct: 117 GGMAEEAIVVADYAVKVPDGLDPIEASSITCAGVTTYKAIKVS-GVK-PGDWQ-----VI 169
Query: 74  AASGGVGHYAVQLAK--LGNTHVTASCGARNIEFVKSLGADEVLDYK--TPDGAALKSPS 129
             +GG+G+ A+Q AK   G   +        +   K +GAD  ++     P     K   
Sbjct: 170 FGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITG 229
Query: 130 GRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLL 188
           G    + I CA   I +     +L   GK++ +   P+  +T ++  + F   + V   L
Sbjct: 230 GLGVQSAIVCAVARIAFEQAVASLKPMGKMVAVAV-PNTEMTLSVPTVVFDGVE-VAGSL 287
Query: 189 IPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVE 239
           +  R +L    +   EGK+K ++ ++  L +  D   E   G   G+++++
Sbjct: 288 VGTRLDLAEAFQFGAEGKVKPIVATRK-LEEINDIIDEMKAGKIEGRMVID 337

>pdb|3JYL|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato Dc3000 Quinone Oxidoreductase Length = 325

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 93/238 (39%), Gaps = 16/238 (6%)
Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           G  +E  V  E++ V     VS  + + L + GLT    L Q+  VK       + IL  
Sbjct: 93  GAYSEVHVLPEANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVK-----PGEIILFH 147
Query: 74  AASGGVGHYAVQLAK-LGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGA--ALKSPSG 130
           AA+GGVG  A Q AK LG   +            K+LGA E +DY   D A   L+   G
Sbjct: 148 AAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDG 207
Query: 131 RKYDAVIHCATGIPWSTFEPNLGTNGKVIDI--TPGPSAMLTFALKKLTFSKKQLVPLL- 187
           +K   V        W T   ++   G V+      GP + +   +     S     P L 
Sbjct: 208 KKCPVVYDGVGQDTWLTSLDSVAPRGLVVSFGNASGPVSGVNLGILAQKDSVYVTRPTLG 267
Query: 188 -LIPKRENL----DFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP 240
                 +NL    D L  ++  GKLK     ++ L  A  A  E      TG  I+ P
Sbjct: 268 SYANNAQNLQTMADELFDMLASGKLKVDGIEQYALKDAAKAQIELSARRTTGSTILIP 325

>pdb|2Y05|A Chain A, Crystal Structure Of Human Leukotriene B4 12-Hydroxydehydrogenase In Complex With Nadp And Raloxifene Length = 328

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 41  GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA 100
           G+P  GLTA+  L +  GVK       + ++V AA+G VG    Q+AKL    V  + G+
Sbjct: 122 GMP--GLTAYFGLLEICGVK-----GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGS 174
Query: 101 -RNIEFVKSLGADEVLDYKTPDG--AALKSPSGRKYDAVIHCATG 142
              + +++ LG D V +YKT +     LK  S   YD       G
Sbjct: 175 DEKVAYLQKLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGG 219

>pdb|1ZSV|A Chain A, Crystal Structure Of Human Nadp-Dependent Leukotriene B4 12- Hydroxydehydrogenase Length = 349

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 41  GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA 100
           G+P  GLTA+  L +  GVK       + ++V AA+G VG    Q+AKL    V  + G+
Sbjct: 143 GMP--GLTAYFGLLEICGVK-----GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGS 195
Query: 101 -RNIEFVKSLGADEVLDYKTPDG--AALKSPSGRKYDAVIHCATG 142
              + +++ LG D V +YKT +     LK  S   YD       G
Sbjct: 196 DEKVAYLQKLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGG 240

>pdb|4HFJ|A Chain A, X-ray Crystal Structure Of A Double Bond Reductase From Nicotiana Tabacum Length = 351

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 85/218 (38%), Gaps = 34/218 (15%)
Query: 41  GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA 100
           G+P  G+TA+    +    K     + + + V+AASG VG    Q AK+   +V  S G+
Sbjct: 135 GMP--GMTAYAGFHEVCSPK-----KGETVFVSAASGAVGQLVGQFAKMLGCYVVGSAGS 187
Query: 101 RN-IEFVKS-LGADEVLDYKTPD--GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNG 156
           +  ++ +KS  G DE  +YK      AALK       D       G        N+   G
Sbjct: 188 KEKVDLLKSKFGFDEAFNYKEEQDLSAALKRYFPDGIDIYFENVGGKMLDAVLVNMKLYG 247
Query: 157 KV----------IDITPGPSAMLTFALKK------LTFSKKQLVPLLLIPKRENLDFLVK 200
           ++          ++ T G   +     K+      L F    L P       + L+ ++ 
Sbjct: 248 RIAVCGMISQYNLEQTEGVHNLFCLITKRIRMEGFLVFDYYHLYP-------KYLEMVIP 300
Query: 201 LVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIV 238
            +K GK+  V +  H L  A  A      G   GK +V
Sbjct: 301 QIKAGKVVYVEDVAHGLESAPTALVGLFSGRNIGKQVV 338

>pdb|3B6Z|A Chain A, Lovastatin Polyketide Enoyl Reductase (Lovc) Complexed With 2'- Phosphoadenosyl Isomer Of Crotonoyl-Coa Length = 371

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
Query: 41  GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA 100
           GLP+   +A Q  T S  V          +LV   S       +Q+ +L      A+C  
Sbjct: 148 GLPLPSPSADQPPTHSKPVY---------VLVYGGSTATATVTMQMLRLSGYIPIATCSP 198
Query: 101 RNIEFVKSLGADEVLDYKTPDGA-ALKSPSGRKYDAVIHCATGIPWSTF 148
            N +  KS GA+EV DY+ P+ A  +++ +       + C T +  +TF
Sbjct: 199 HNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCITNVESTTF 247

>pdb|3GQV|A Chain A, Lovastatin Polyketide Enoyl Reductase (Lovc) Mutant K54s With Bound Nadp Length = 371

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
Query: 41  GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA 100
           GLP+   +A Q  T S  V          +LV   S       +Q+ +L      A+C  
Sbjct: 148 GLPLPSPSADQPPTHSKPVY---------VLVYGGSTATATVTMQMLRLSGYIPIATCSP 198
Query: 101 RNIEFVKSLGADEVLDYKTPDGA-ALKSPSGRKYDAVIHCATGIPWSTF 148
            N +  KS GA+EV DY+ P+ A  +++ +       + C T +  +TF
Sbjct: 199 HNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCITNVESTTF 247

>pdb|3NX4|A Chain A, Crystal Structure Of The Yhdh Oxidoreductase From Salmonella Enterica In Complex With Nadp Length = 324

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 5   WRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALT--QSAGVKLD 62
           W +  +H  GGLAE A  K    VA P+ +S+     +  AG TA   +   + AG++  
Sbjct: 88  WGVGENH-WGGLAERARVKGDWLVALPAGLSSRNAXIIGTAGFTAXLCVXALEDAGIR-- 144
Query: 63  GSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIE-FVKSLGADEVL 115
              Q   ++VT ASGGVG  AV L       V A  G  +   ++KSLGA+ +L
Sbjct: 145 --PQDGEVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANRIL 196

>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol Dehydrogenase With Its Coenzyme And Weak Substrate Length = 342

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 98/237 (41%), Gaps = 30/237 (12%)
Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           GG AE+ +A  +     P  V  AE + +  AG+T ++ L Q+       + +    +  
Sbjct: 124 GGYAEYVLADPNYVGILPKNVEFAEIAPILCAGVTVYKGLKQT-------NARPGQWVAI 176
Query: 74  AASGGVGHYAVQLAKLGNTHVTA-SCGARNIEFVKSLGADEVLDYKTPDGA-ALKSPSGR 131
           +  GG+GH AVQ A+    HV A       +E  + LGA   ++ +  D   A++   G 
Sbjct: 177 SGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGG 236
Query: 132 KYDAVIHCATGIPWSTFEPNLGTNGK-----VIDITPG--PSAMLTFALKKLTFSKKQLV 184
            +  ++   T +  S F   +G   +     ++ + PG  P+ +    LK L  +     
Sbjct: 237 AHGVLV---TAVSNSAFGQAIGMARRGGTIALVGLPPGDFPTPIFDVVLKGLHIAGS--- 290
Query: 185 PLLLIPKRENLDFLVKLVKEGKLKTVINSKHP--LSKAEDAWAESIDGHATGKIIVE 239
              ++  R +L   +    EG +K  I   HP  L        +   G   G+I++E
Sbjct: 291 ---IVGTRADLQEALDFAGEGLVKATI---HPGKLDDINQILDQMRAGQIEGRIVLE 341

>pdb|2J3H|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond Reductase (At5g16970)-Apo Form Length = 345

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 89/211 (42%), Gaps = 20/211 (9%)
Query: 41  GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA 100
           G+P  G+TA+    +    K     + + + V+AASG VG    QLAK+   +V  S G+
Sbjct: 137 GMP--GMTAYAGFYEVCSPK-----EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGS 189
Query: 101 RN-IEFVKS-LGADEVLDYKTPDG--AALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNG 156
           +  ++ +K+  G D+  +YK      AALK       D       G        N+  +G
Sbjct: 190 KEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVGGKMLDAVLVNMNMHG 249
Query: 157 KV-----IDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKREN----LDFLVKLVKEGKL 207
           ++     I      +      L  + + + ++   ++    +     L+F++  ++EGK+
Sbjct: 250 RIAVCGMISQYNLENQEGVHNLSNIIYKRNRIQGFVVSDFYDKYSKFLEFVLPHIREGKI 309
Query: 208 KTVINSKHPLSKAEDAWAESIDGHATGKIIV 238
             V +    L KA +A      G   GK +V
Sbjct: 310 TYVEDVADGLEKAPEALVGLFHGKNVGKQVV 340

>pdb|1XA0|A Chain A, Crystal Structure Of Mcsg Target Apc35536 From Bacillus Stearothermophilus Length = 328

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 61/116 (52%), Gaps = 12/116 (10%)
Query: 5   WRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGS 64
           + I V+H GG  +E+A       V  P  ++  E   +  AG TA  ++      +L+  
Sbjct: 91  YEIGVTHFGG-YSEYARLHGEWLVPLPKGLTLKEAXAIGTAGFTAALSIH-----RLEEH 144
Query: 65  G---QQKNILVTAASGGVGHYAVQ-LAKLGNTHVTASCG-ARNIEFVKSLGADEVL 115
           G   ++  +LVT A+GGVG  AV  LAK G T V AS G A   ++++ LGA EVL
Sbjct: 145 GLTPERGPVLVTGATGGVGSLAVSXLAKRGYT-VEASTGKAAEHDYLRVLGAKEVL 199

>pdb|4B7C|A Chain A, Crystal Structure Of Hypothetical Protein Pa1648 From Pseudomonas Aeruginosa. Length = 336

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 62/127 (48%), Gaps = 28/127 (22%)
Query: 40  SGLPVAGLTAHQALTQSAGVKLDGSGQQKN---ILVTAASGGVGHYAVQLAKLGNTHVTA 96
           S L + G+TA+ AL       LD  GQ KN   ++++ A+G VG  A Q+A+L    V  
Sbjct: 128 SALGMTGMTAYFAL-------LD-VGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVG 179
Query: 97  -SCGARNIEF-VKSLGADEVLDYKTPDGAA-LKSPSGRKYDAVIHCATGIPWSTFEPNLG 153
            + GA    F V+ LG D  +DYK  D AA LK            C  GI    F  N+G
Sbjct: 180 IAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKR----------ECPKGI--DVFFDNVG 227
Query: 154 TNGKVID 160
             G+++D
Sbjct: 228 --GEILD 232

>pdb|4EYE|A Chain A, Crystal Structure Of A Probable Oxidoreductase From Mycobacterium Abscessus Solved By Iodide Ion Sad Length = 342

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 106/240 (44%), Gaps = 22/240 (9%)
Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           GG AE      S+ +  P ++  AE   L     T + A  +   ++       + +LV 
Sbjct: 112 GGYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLR-----AGETVLVL 166
Query: 74  AASGGVGHYAVQLAK-LGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPS-GR 131
            A+GG+G  A+Q+AK +G   +         EFVKS+GAD VL  +     A++  + G 
Sbjct: 167 GAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGA 226
Query: 132 KYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPL----L 187
             D V+    G  +      L + G+++ +      + T  + +L      L+ +     
Sbjct: 227 GVDMVVDPIGGPAFDDAVRTLASEGRLLVVGFAAGGIPTIKVNRLLLRNASLIGVAWGEF 286
Query: 188 LIPKRENLDFLV-------KLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP 240
           L   R + D+L        KLV EG ++  ++++ PLS+   A  +  DG   GK+++ P
Sbjct: 287 L---RTHADYLYETQAGLEKLVAEG-MRPPVSARIPLSEGRQALQDFADGKVYGKMVLVP 342

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	240
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	2e-64
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	8e-59
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	2e-45
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	1e-44
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	7e-44
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	5e-42
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	1e-37
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	1e-35
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	1e-35
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	7e-34
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	1e-32
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	5e-31
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	2e-30
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	3e-30
3gms_A	340	Putative NADPH:quinone reductase; structural genom	4e-29
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	4e-29
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	5e-29
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	7e-29
4eye_A	342	Probable oxidoreductase; structural genomics, niai	2e-28
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	2e-27
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	3e-26
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	2e-24
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	2e-24
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	2e-22
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	3e-21
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	4e-21
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	3e-19
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	4e-19
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	1e-18
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	6e-17
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	8e-15
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	9e-14
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	1e-13
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	2e-13
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	5e-13
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	6e-13
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	2e-12
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	2e-12
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	4e-12
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	4e-12
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	5e-12
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	6e-12
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	3e-11
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	9e-11
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	1e-10
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	1e-10
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	9e-09
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	3e-08
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	5e-08
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	6e-08
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	7e-08
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	6e-06
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	6e-06
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	2e-05
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	2e-05
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	3e-05
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	4e-05
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	4e-05
1xq6_A	253	Unknown protein; structural genomics, protein stru	7e-05
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	8e-05
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	2e-04
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	4e-04
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	4e-04

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score =  203 bits (519), Expect = 2e-64
 Identities = 65/247 (26%), Positives = 108/247 (43%), Gaps = 20/247 (8%)

Query: 11  HNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNI 70
              G L+EF V   +    +P  ++  + + LP   LTA  A+ +  G+       ++ +
Sbjct: 129 WKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKR-V 187

Query: 71  LVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSG 130
           L+  ASGGVG +A+Q+ K  + HVTA C     E V+ LGAD+V+DYK+      +  S 
Sbjct: 188 LILGASGGVGTFAIQVMKAWDAHVTAVCSQDASELVRKLGADDVIDYKSGS-VEEQLKSL 246

Query: 131 RKYDAVIHCATGIPWSTFEPNL--GTNGKVIDI-TPGPSAMLTFALKK------LTFSKK 181
           + +D ++    G   +     L   +    + + TP    M    +        +T   K
Sbjct: 247 KPFDFILDNVGGSTETWAPDFLKKWSGATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSK 306

Query: 182 QLVP---------LLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHA 232
            L              +     LD + +LV  GK++ VI    P SK  +A+ +   GHA
Sbjct: 307 ALKHFWKGVHYRWAFFMASGPCLDDIAELVDAGKIRPVIEQTFPFSKVPEAFLKVERGHA 366

Query: 233 TGKIIVE 239
            GK ++ 
Sbjct: 367 RGKTVIN 373

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score =  187 bits (478), Expect = 8e-59
 Identities = 70/234 (29%), Positives = 105/234 (44%), Gaps = 12/234 (5%)

Query: 6   RIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSG 65
                 +    AE+  A   + + +  ++S  + + LP AGLTA QAL Q A VK    G
Sbjct: 98  IAGFPDHPCCYAEYVCASPDTIIQKLEKLSFLQAASLPTAGLTALQALNQ-AEVK---QG 153

Query: 66  QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAAL 125
               +L+ A +GGVGH A+QLAK   T V  +   RN  F+K+LGA++ ++Y   D    
Sbjct: 154 D--VVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRNHAFLKALGAEQCINYHEEDFLLA 211

Query: 126 KSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVP 185
                   DAVI    G         L   G ++ +    +  +    K+     ++   
Sbjct: 212 ---ISTPVDAVIDLVGGDVGIQSIDCLKETGCIVSVPTITAGRVIEVAKQK---HRRAFG 265

Query: 186 LLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVE 239
           LL     E L +L KLV E KL+  I+    LS+A  A      GH  GK++ +
Sbjct: 266 LLKQFNIEELHYLGKLVSEDKLRIEISRIFQLSEAVTAHELLETGHVRGKLVFK 319

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score =  154 bits (391), Expect = 2e-45
 Identities = 62/240 (25%), Positives = 101/240 (42%), Gaps = 15/240 (6%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           G  AEF +  E     +P  +  AE + LP+  +TA +A      V     G    IL+ 
Sbjct: 119 GTNAEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIV 178

Query: 74  AASGGVGHYAVQLAK-LGNTHV--TASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSG 130
             +GGVG  AVQ+A+   +  V  TAS      E+VKSLGA  V+D+  P  A + +   
Sbjct: 179 GGAGGVGSIAVQIARQRTDLTVIATAS-RPETQEWVKSLGAHHVIDHSKPLAAEVAALGL 237

Query: 131 RKYDAVIHCA-TGIPWSTFEPNLGTNGKVIDI-TPGPSAMLTFALKKLTFS------KKQ 182
                V     T    +     +   G+   I  P    ++ F  K ++        +  
Sbjct: 238 GAPAFVFSTTHTDKHAAEIADLIAPQGRFCLIDDPSAFDIMLFKRKAVSIHHELMFTRPM 297

Query: 183 LVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAED---AWAESIDGHATGKIIVE 239
                +  +   L+ + +LV EG+L+T + ++     A +   A A    G A GK+++E
Sbjct: 298 FGTPDMSEQGRLLNDVSRLVDEGRLRTTLTNRLSPINAANLKQAHALVESGTARGKVVIE 357

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score =  152 bits (385), Expect = 1e-44
 Identities = 53/241 (21%), Positives = 91/241 (37%), Gaps = 16/241 (6%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQ-KNILV 72
           G  AE+ +  E      P  +SA +   LP+ G+TA++ L    G+  + +  + K +L+
Sbjct: 97  GSNAEYQLINERLVAKAPKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLI 156

Query: 73  TAASGGVGHYAVQLAKLGNTHV--TASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSG 130
              +GGVG  A Q+AK     V  TAS     IE+ K +GAD VL++K       K+   
Sbjct: 157 INGAGGVGSIATQIAKAYGLRVITTAS-RNETIEWTKKMGADIVLNHKESLLNQFKTQGI 215

Query: 131 RKYDAVIHC-ATGIPWSTFEPNLGTNGKVIDI--TPGPSAMLTFALKKLT------FSKK 181
              D V     T + +      +   G +  I        +     K L+      F++ 
Sbjct: 216 ELVDYVFCTFNTDMYYDDMIQLVKPRGHIATIVAFENDQDLNALKPKSLSFSHEFMFARP 275

Query: 182 QLVPLLLIPKRENLDFLVKLVKEGKLKTVIN---SKHPLSKAEDAWAESIDGHATGKIIV 238
                 +I   E L+ +   V++   +                 A          GK+++
Sbjct: 276 LNQTDDMIKHHEYLEDITNKVEQNIYQPTTTKVIEGLTTENIYQAHQILESNTMIGKLVI 335

Query: 239 E 239
            
Sbjct: 336 N 336

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score =  149 bits (379), Expect = 7e-44
 Identities = 57/246 (23%), Positives = 101/246 (41%), Gaps = 22/246 (8%)

Query: 8   DVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQ 67
            V    G  A+FA        ++P+ ++  + S LP+  +TA + L   A V+    GQ 
Sbjct: 97  GVGGLQGTHAQFAAVDARLLASKPAALTMRQASVLPLVFITAWEGLVDRAQVQ---DGQ- 152

Query: 68  KNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKS 127
             +L+    GGVGH A+Q+A      V A+    ++E+V+ LGA  +   + P+  A + 
Sbjct: 153 -TVLIQGGGGGVGHVAIQIALARGARVFATARGSDLEYVRDLGATPIDASREPEDYAAEH 211

Query: 128 PSGRKYDAVIHCATGIPWSTFEPNLGT---NGKVIDI-TPGPSAMLTFALKKLTFS---- 179
            +G+ +D V     G      + +       G V+     G   +   + K+ T+S    
Sbjct: 212 TAGQGFDLVYDTLGG---PVLDASFSAVKRFGHVVSCLGWGTHKLAPLSFKQATYSGVFT 268

Query: 180 -KKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKH-PLSKAEDAWAESID----GHAT 233
               L    L    E L     LV+ GKL   ++ +   +++   A+   +         
Sbjct: 269 LHTLLANEGLAHFGEMLREADALVQTGKLAPRLDPRTFSIAEIGSAYDAVLGRNDVPRQR 328

Query: 234 GKIIVE 239
           GKI + 
Sbjct: 329 GKIAIT 334

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score =  144 bits (365), Expect = 5e-42
 Identities = 36/233 (15%), Positives = 72/233 (30%), Gaps = 23/233 (9%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           G  AEF V      +  P  +S    + LP   LTA QA  +   +      +   +L+ 
Sbjct: 96  GSFAEFTVLNTDRVMTLPDNLSFERAAALPCPLLTAWQAF-EKIPLT---KQR--EVLIV 149

Query: 74  AASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKY 133
              G V +   Q+       V     + +       G   +    +           +KY
Sbjct: 150 GF-GAVNNLLTQMLNNAGYVVDLVSASLSQALAAKRGVRHLYREPSQV--------TQKY 200

Query: 134 DAVIHCATGIPWSTFEPNLGTNGKVIDIT-PGPSAMLTFALKKLTFS-------KKQLVP 185
            A+         +   P+L  NG +I I    P+ +     + +++              
Sbjct: 201 FAIFDAVNSQNAAALVPSLKANGHIICIQDRIPAPIDPAFTRTISYHEIALGALHDFGDR 260

Query: 186 LLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIV 238
                  +  + L+ L+ +GK++          +  +A   S        + +
Sbjct: 261 QDWQILMQQGEALLTLIAQGKMEIAAPDIFRFEQMIEALDHSEQTKLKTVLTL 313

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score =  133 bits (337), Expect = 1e-37
 Identities = 63/247 (25%), Positives = 109/247 (44%), Gaps = 19/247 (7%)

Query: 1   MCNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVK 60
           +C  ++I   H  G  AE+ V  E++   +P  +S  E + +P+  LTA Q +    GV+
Sbjct: 106 LCPRYQILGEHRHGTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVR 165

Query: 61  LDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKT 119
               G   ++LV AA  GV   A+Q+AKL    V A+ G    +   K+LGADE ++Y  
Sbjct: 166 ---PGD--DVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADETVNYTH 220

Query: 120 PD--GAALKSPSGRKYDAVIHCATGIPWSTFEPN---LGTNGKVIDI--TPGPSAMLTFA 172
           PD      +   G+  D V+          FE         G++     + G     T  
Sbjct: 221 PDWPKEVRRLTGGKGADKVVDHTGA---LYFEGVIKATANGGRIAIAGASSGYEG--TLP 275

Query: 173 LKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHA 232
              + + +  ++   +   +  L  +++ V+EGKLK V+    PL  A +      +   
Sbjct: 276 FAHVFYRQLSILGSTMAS-KSRLFPILRFVEEGKLKPVVGQVLPLEAAAEGHRLLEERRV 334

Query: 233 TGKIIVE 239
            GK++++
Sbjct: 335 FGKVVLQ 341

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score =  130 bits (328), Expect = 1e-35
 Identities = 55/248 (22%), Positives = 98/248 (39%), Gaps = 24/248 (9%)

Query: 11  HNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNI 70
            N GGLAE+ V + S  + +P+ ++  E +  P+   TA++ L    G ++   G    +
Sbjct: 168 TNFGGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQM-KQGD--IV 224

Query: 71  LVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPD-------- 121
           L+  ASGG+G YA+Q  K G     A    A+    V++LG D V++             
Sbjct: 225 LIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADD 284

Query: 122 -----------GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLT 170
                         +   +GR+ D V      + +          G V+        + T
Sbjct: 285 PRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVTFGLSVIVARRGGTVVTCGSSSGYLHT 344

Query: 171 FALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDG 230
           F  + L    K++V        E      +L + G +   +++ +PL++A +A       
Sbjct: 345 FDNRYLWMKLKKIVG-SHGANHEEQQATNRLFESGAVVPAMSAVYPLAEAAEACRVVQTS 403

Query: 231 HATGKIIV 238
              GK+ V
Sbjct: 404 RQVGKVAV 411

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score =  129 bits (325), Expect = 1e-35
 Identities = 41/258 (15%), Positives = 81/258 (31%), Gaps = 32/258 (12%)

Query: 11  HNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQ-------SAGVKLDG 63
            + G  +++ V +       P  +S  + + LP    TA  A+          +  +   
Sbjct: 102 PDQGAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPT 161

Query: 64  SGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPD-G 122
             +   +LV   S       +Q+ +L      A+C   N +  KS GA+EV DY+ P+  
Sbjct: 162 HSKPVYVLVYGGSTATATVTMQMLRLSGYIPIATCSPHNFDLAKSRGAEEVFDYRAPNLA 221

Query: 123 AALKSPSGRKYDAVIHCATGIPWSTFEPNLG----TNGKVIDITPGPSAMLTFALKKLTF 178
             +++ +       + C T     +            G  + + P P    T  +    +
Sbjct: 222 QTIRTYTKNNLRYALDCITN--VESTTFCFAAIGRAGGHYVSLNPFPEHAATRKMVTTDW 279

Query: 179 S--------KKQLVPLLLIPKRENL--------DFLVKLVKEGKLKTVINSKHP--LSKA 220
           +                  P  E              +LV++G+L               
Sbjct: 280 TLGPTIFGEGSTWPAPYGRPGSEEERQFGEDLWRIAGQLVEDGRLVHHPLRVVQGGFDHI 339

Query: 221 EDAWAESIDGHATGKIIV 238
           +        G  +G+ +V
Sbjct: 340 KQGMELVRKGELSGEKLV 357

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score =  125 bits (316), Expect = 7e-34
 Identities = 51/253 (20%), Positives = 91/253 (35%), Gaps = 34/253 (13%)

Query: 11  HNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNI 70
            N GGLAE A+ K +  + +P  +S  E +   +   TA++ L    G  +   G   N+
Sbjct: 176 TNFGGLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGM-KQGD--NV 232

Query: 71  LVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPS 129
           L+  ASGG+G YA Q A  G  +        +  E  +++GA+ ++D         K  +
Sbjct: 233 LIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDEN 292

Query: 130 -------------------GRKYDAVIHCATGIPWSTFEPNL---GTNGKVIDI--TPGP 165
                              G   D V          TF  ++      G +     T G 
Sbjct: 293 TQDPKEWKRFGKRIRELTGGEDIDIVFEHPGR---ETFGASVFVTRKGGTITTCASTSGY 349

Query: 166 SAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWA 225
                +  + L  S K+++               +L+ +G++   ++  + L     A  
Sbjct: 350 MH--EYDNRYLWMSLKRIIGSHFAN-YREAWEANRLIAKGRIHPTLSKVYSLEDTGQAAY 406

Query: 226 ESIDGHATGKIIV 238
           +       GK+ V
Sbjct: 407 DVHRNLHQGKVGV 419

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score =  120 bits (304), Expect = 1e-32
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 37/249 (14%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           G     AV  E + +  PS++     + L V   TA++ L     ++    G   +++  
Sbjct: 120 GTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQ---PGD--SVIQN 174

Query: 74  AASGGVGHYAVQLAKLGNTHVTASCGARN-----IEFVKSLGADEVLDYKTPDGAALKS- 127
           A++ GVG   +Q+A             R       + +KSLGA+ V+  +      +K+ 
Sbjct: 175 ASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNF 234

Query: 128 -PSGRKYDAVIHCATGIPWSTFEPN---LGTNGKVI-------DITPGPSAMLTFALKKL 176
                +    ++C  G    +       L   G ++              ++L F  K L
Sbjct: 235 FKDMPQPRLALNCVGG---KSSTELLRQLARGGTMVTYGGMAKQPVVASVSLLIF--KDL 289

Query: 177 TFS-------KKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESID 229
                     KK   P      +E +  L  L++ G+L     S+ PL   + A   S+ 
Sbjct: 290 KLRGFWLSQWKKDHSPDQF---KELILTLCDLIRRGQLTAPACSQVPLQDYQSALEASMK 346

Query: 230 GHATGKIIV 238
              + K I+
Sbjct: 347 PFISSKQIL 355

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score =  116 bits (292), Expect = 5e-31
 Identities = 63/238 (26%), Positives = 102/238 (42%), Gaps = 20/238 (8%)

Query: 12  NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNIL 71
             GG AE+A+A + +    P ++   +G+ + +   TA++AL  SA VK   +G+  ++L
Sbjct: 121 ISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVK---AGE--SVL 175

Query: 72  VTAASGGVGHYAVQLAK-LGNT-HVTASCGARNIEFVKSLGADEVLDYKTPDGAA--LKS 127
           V  ASGGVG  A Q+A+  G     TA       + V   GA EV +++  +      K 
Sbjct: 176 VHGASGGVGLAACQIARAYGLKILGTAG-TEEGQKIVLQNGAHEVFNHREVNYIDKIKKY 234

Query: 128 PSGRKYDAVIHCATGIPWSTFEPN---LGTNGKVIDI---TPGPSAMLTFALKKLTFSKK 181
              +  D +I             +   L   G+VI +               K+ +    
Sbjct: 235 VGEKGIDIIIEMLAN---VNLSKDLSLLSHGGRVIVVGSRGTIEINPRDTMAKESSIIGV 291

Query: 182 QLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDG-HATGKIIV 238
            L        ++    L   ++ G LK VI S++PL K  +A    I G  ATGK+I+
Sbjct: 292 TLFSSTKEEFQQYAAALQAGMEIGWLKPVIGSQYPLEKVAEAHENIIHGSGATGKMIL 349

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score =  114 bits (288), Expect = 2e-30
 Identities = 61/250 (24%), Positives = 104/250 (41%), Gaps = 27/250 (10%)

Query: 1   MCNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVK 60
               +      + G L+E+ V  E   VA P  + AAE S LP AGLTA  AL +   ++
Sbjct: 129 RTPAYETLGGAHPGVLSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLTAWFALVEKGHLR 188

Query: 61  LDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHV--TASCGARNIEFVKSLGADEVLDYK 118
              +G    ++V    GGV  + +Q+AK     V  T+S     ++   +LGAD  ++  
Sbjct: 189 ---AGD--RVVVQGT-GGVALFGLQIAKATGAEVIVTSS-SREKLDRAFALGADHGINRL 241

Query: 119 TPD--GAALKSPSGRKYDAVIHCATGIPWSTFEPNL---GTNGKVIDI--TPGPSAMLTF 171
             D           R  D ++  A G   +    +L     +G++  I    G     + 
Sbjct: 242 EEDWVERVYALTGDRGADHILEIAGG---AGLGQSLKAVAPDGRISVIGVLEGFEV--SG 296

Query: 172 ALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWA--ESID 229
            +  L      +  + +   R  L+ LV  V    LK VI+ ++  ++  +A A  +   
Sbjct: 297 PVGPLLLKSPVVQGISVGH-RRALEDLVGAVDRLGLKPVIDMRYKFTEVPEALAHLDR-- 353

Query: 230 GHATGKIIVE 239
           G   GK+++E
Sbjct: 354 GP-FGKVVIE 362

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score =  113 bits (286), Expect = 3e-30
 Identities = 51/259 (19%), Positives = 90/259 (34%), Gaps = 39/259 (15%)

Query: 12  NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNIL 71
           N    AE            P ++S +E +  P+  +TA+  L + A ++    G   ++L
Sbjct: 93  NYNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLR---EGM--SVL 147

Query: 72  VTAASGGVGHYAVQLAK-LGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSG 130
           V +A GGVG    QL   + N  V  +      E +K      + D        +K  S 
Sbjct: 148 VHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEAIKD-SVTHLFDRNADYVQEVKRISA 206

Query: 131 RKYDAVIHCATGIPWSTFEPN---LGTNGKVIDI----TPGPSAMLTFALKKLTFSKKQL 183
              D V+ C  G            L   G  I               F+  K  +  +++
Sbjct: 207 EGVDIVLDCLCG---DNTGKGLSLLKPLGTYILYGSSNMVTGETKSFFSFAKSWWQVEKV 263

Query: 184 VPLLLIPKR----------------------ENLDFLVKLVKEGKLKTVINSKHPLSKAE 221
            P+ L  +                         ++ L+ L  + K+K V++S   L + +
Sbjct: 264 NPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKKIKPVVDSLWALEEVK 323

Query: 222 DAWAESIDGHATGKIIVEP 240
           +A     D    GK+I++ 
Sbjct: 324 EAMQRIHDRGNIGKLILDV 342

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score =  111 bits (279), Expect = 4e-29
 Identities = 45/246 (18%), Positives = 87/246 (35%), Gaps = 26/246 (10%)

Query: 12  NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNIL 71
             G   E+        V  P  +     + + +  LTA    T++  ++         +L
Sbjct: 95  GEGTWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQ---RND--VLL 149

Query: 72  VTAASGGVGHYAVQLAKLGNTHV--TASCGARNIEFVKSLGADEVLDYKTPDGAA--LKS 127
           V A    +GH   QL+++ N  +        ++ E +  LGA  V+D  T       ++ 
Sbjct: 150 VNACGSAIGHLFAQLSQILNFRLIAVTR-NNKHTEELLRLGAAYVIDTSTAPLYETVMEL 208

Query: 128 PSGRKYDAVIHCATGIPWSTFEPN---LGTNGKVIDI------TPGPSAMLTFALKKLTF 178
            +G   DA I    G            L  NG  + I          + ++T A      
Sbjct: 209 TNGIGADAAIDSIGG---PDGNELAFSLRPNGHFLTIGLLSGIQVNWAEIVTKAKVHANI 265

Query: 179 SKKQLVPLLLIPK--RENLDFLVKLVKEGKLKTV-INSKHPLSKAEDAWAESIDG-HATG 234
              +     + P   +E    L++LV+  +L+ + ++S + L+  + A           G
Sbjct: 266 FHLRHWNDEVSPYKWQETFRHLIRLVENEQLRFMKVHSTYELADVKAAVDVVQSAEKTKG 325

Query: 235 KIIVEP 240
           K+ +  
Sbjct: 326 KVFLTS 331

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score =  111 bits (279), Expect = 4e-29
 Identities = 60/243 (24%), Positives = 103/243 (42%), Gaps = 23/243 (9%)

Query: 12  NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNIL 71
           NGG  AE+ +      +  P    A + + LP    T    L Q AG+     G+  ++L
Sbjct: 118 NGGAYAEYCLLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQMAGLT---EGE--SVL 172

Query: 72  VTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPD-GAALKSPS 129
           +   + G+G  A+QLA+     V A+ G     E  + LGA   ++Y++ D  A +K+ +
Sbjct: 173 IHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAET 232

Query: 130 GRKYDAVIHCATGIPWSTFEPN---LGTNGKVIDI--TPGPSA----MLTFALKKLTFSK 180
           G+  D ++        + FE N   L  +G +  I    G  A    +    +K+LT + 
Sbjct: 233 GQGVDIILDMIGA---AYFERNIASLAKDGCLSIIAFLGGAVAEKVNLSPIMVKRLTVTG 289

Query: 181 KQLVPLLLIPKRENLDFLVK----LVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKI 236
             + P     KR   D L+     L++ G +  VI+         DA     +G   GK+
Sbjct: 290 STMRPRTAEEKRAIRDDLLSEVWPLLEAGTVAPVIHKVFAFEDVADAHRLLEEGSHVGKV 349

Query: 237 IVE 239
           ++ 
Sbjct: 350 MLT 352

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score =  110 bits (278), Expect = 5e-29
 Identities = 45/245 (18%), Positives = 81/245 (33%), Gaps = 27/245 (11%)

Query: 12  NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNIL 71
           N G  AE+AVA+ ++ +     V   +G+ + V  LTA  A+      +     +    +
Sbjct: 116 NWGSWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAI-AMFDIVKQE---GEK--AFV 169

Query: 72  VTAASGGVGHYAVQLAKLGNTHV--TASCGARNIEFVKSLGADEVLDYKTPD-GAALKSP 128
           +TA +  +    + LAK        T       I  +K +GA  VL+ K PD  A L+  
Sbjct: 170 MTAGASQLCKLIIGLAKEEGFRPIVTVR-RDEQIALLKDIGAAHVLNEKAPDFEATLREV 228

Query: 129 S-GRKYDAVIHCATGIPWSTFEPN---LGTNGKVIDI------TPGPSAMLTFALKKLTF 178
               +    +   TG            +    + I                    +    
Sbjct: 229 MKAEQPRIFLDAVTG---PLASAIFNAMPKRARWIIYGRLDPDATVIREPGQLIFQHKHI 285

Query: 179 SKKQLVPLLLIPK---RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGK 235
               L   +   K      +    K   +G+  T + +  PL++A       +     GK
Sbjct: 286 EGFWLSEWMRQFKERRGPAILEAQKRFSDGRWSTDVTAVVPLAEAIAWVPAELTKP-NGK 344

Query: 236 IIVEP 240
           + + P
Sbjct: 345 VFIRP 349

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score =  110 bits (277), Expect = 7e-29
 Identities = 62/256 (24%), Positives = 92/256 (35%), Gaps = 42/256 (16%)

Query: 13  GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILV 72
            G  AE+ V   S     PS         L V+G TA+ +L +  G+     G+   +LV
Sbjct: 117 PGSFAEYTVVPASIATPVPSVKPEY--LTLLVSGTTAYISLKELGGLS---EGK--KVLV 169

Query: 73  TAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPD-GAALKSPSG 130
           TAA+GG G +A+QL+K    HV  +C       F+KSLG D  ++YKT   G  LK    
Sbjct: 170 TAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYP 229

Query: 131 RKYDAVIHCATGIPWSTFEPNL----------------GTNGKV-IDITPGPSAMLTFAL 173
              D V     G   + F+  +                G      +      +       
Sbjct: 230 EGVDVVYESVGG---AMFDLAVDALATKGRLIVIGFISGYQTPTGLSPVKAGTLPAKLLK 286

Query: 174 KKLTFSKKQLVPLLLIPKR--ENLDFLVKLVKEGKLKTVINSK--------HPLSKAEDA 223
           K  +    Q   L     +    +  L+++   G L   ++            L     A
Sbjct: 287 KSASV---QGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFRA 343

Query: 224 WAESIDGHATGKIIVE 239
                 G  TGKI+VE
Sbjct: 344 VNYMYMGKNTGKIVVE 359

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score =  108 bits (273), Expect = 2e-28
 Identities = 59/252 (23%), Positives = 103/252 (40%), Gaps = 44/252 (17%)

Query: 13  GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILV 72
            GG AE      S+ +  P ++  AE   L     T + A  +   ++   +G+   +LV
Sbjct: 111 IGGYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLR---AGE--TVLV 165

Query: 73  TAASGGVGHYAVQLAK-LGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGR 131
             A+GG+G  A+Q+AK +G   +         EFVKS+GAD VL  +     A++  +G 
Sbjct: 166 LGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGG 225

Query: 132 K-----YDAVIHCATGIPWSTFEPNL---GTNGK--VIDITPG--PSAMLTFALKK---- 175
                  D +     G     F+  +    + G+  V+    G  P+  +   L +    
Sbjct: 226 AGVDMVVDPI-----G--GPAFDDAVRTLASEGRLLVVGFAAGGIPTIKVNRLLLRNASL 278

Query: 176 -------LTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESI 228
                     +    +        E    L KLV EG ++  ++++ PLS+   A  +  
Sbjct: 279 IGVAWGEFLRTHADYL-------YETQAGLEKLVAEG-MRPPVSARIPLSEGRQALQDFA 330

Query: 229 DGHATGKIIVEP 240
           DG   GK+++ P
Sbjct: 331 DGKVYGKMVLVP 342

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score =  106 bits (267), Expect = 2e-27
 Identities = 54/251 (21%), Positives = 98/251 (39%), Gaps = 35/251 (13%)

Query: 12  NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNIL 71
            GGG A++    E   +  P  ++  + + +P A LTA Q L     V+   +G    +L
Sbjct: 113 PGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQ---AGD--YVL 167

Query: 72  VTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPDGAA--LKSP 128
           + A   GVG  A+QL ++       + G  + ++  + LGA    +YK  D +   LK  
Sbjct: 168 IHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFT 227

Query: 129 SGRKYDAVIHCATGIPWSTFEPN---LGTNGKVIDI--TPGPSA----MLTFALKKLTFS 179
            G   + ++ C  G   S +E N   L  +G+ +      G             K+ +  
Sbjct: 228 KGAGVNLILDCIGG---SYWEKNVNCLALDGRWVLYGLMGGGDINGPLFSKLLFKRGSLI 284

Query: 180 -----------KKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESI 228
                      K+ LV        E +          +L  V++  +P+++ ++A     
Sbjct: 285 TSLLRSRDNKYKQMLVNAF----TEQILPHFSTEGPQRLLPVLDRIYPVTEIQEAHKYME 340

Query: 229 DGHATGKIIVE 239
                GKI++E
Sbjct: 341 ANKNIGKIVLE 351

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score =  102 bits (256), Expect = 3e-26
 Identities = 63/239 (26%), Positives = 100/239 (41%), Gaps = 25/239 (10%)

Query: 12  NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNIL 71
             GGLAE     + + +  P  +S  E +  PV+ LTA+ AL + A  +    G+   +L
Sbjct: 77  PQGGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLAL-KRAQAR---PGE--KVL 130

Query: 72  VTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSG 130
           V AA+G +G  AVQ+A+     V A+      +    +LGA+E   Y      A    + 
Sbjct: 131 VQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAK---AW 187

Query: 131 RKYDAVIHCATGIPWSTFEPN---LGTNGK--VIDITPGPSAMLTFA---LKKLTFSKKQ 182
              D ++    G      E +   L   G+   I    G  A +       + L      
Sbjct: 188 GGLD-LVLEVRG---KEVEESLGLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFW 243

Query: 183 LVPLLLIPK--RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVE 239
           L PLL       E L FL+  +   +L+ V+    P ++AE A+   +D   TGK++V 
Sbjct: 244 LTPLLREGALVEEALGFLLPRL-GRELRPVVGPVFPFAEAEAAFRALLDRGHTGKVVVR 301

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score = 98.5 bits (246), Expect = 2e-24
 Identities = 50/244 (20%), Positives = 94/244 (38%), Gaps = 37/244 (15%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           G  AE+ +      + +   ++A E + L  +G+T ++A+ + A +      +   +LV 
Sbjct: 124 GAYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITTYRAVRK-ASLD---PTK--TLLVV 177

Query: 74  AASGGVGHYAVQLAK-LGNTHVTA-SCGARNIEFVKSLGADEVLDYKTPDGAA--LKSPS 129
            A GG+G  AVQ+AK +    +         +E  K  GAD V++    D  A   +   
Sbjct: 178 GAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITE 237

Query: 130 GRKYDAVIHCATGIPWSTFEP---NLGTNGKVIDI--TPG--PSAMLTFALKKLTF---- 178
            +  DAVI         T       L   GK + +               L ++ F    
Sbjct: 238 SKGVDAVIDLN-NSE-KTLSVYPKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVGSL 295

Query: 179 --SKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKI 236
             ++   + ++            +L + GK+K +I     L +A +A     +  A G+ 
Sbjct: 296 VGNQSDFLGIM------------RLAEAGKVKPMITKTMKLEEANEAIDNLENFKAIGRQ 343

Query: 237 IVEP 240
           ++ P
Sbjct: 344 VLIP 347

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score = 98.2 bits (245), Expect = 2e-24
 Identities = 47/273 (17%), Positives = 92/273 (33%), Gaps = 62/273 (22%)

Query: 12  NGGGLAEFAVAKESS-----------TVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVK 60
           N G     A+  +                +P+ ++  +G+ + V  LTA+  LT    + 
Sbjct: 106 NFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLT 165

Query: 61  LDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARN-----IEFVKSLGADEVL 115
               G+    +    +  VG YA Q+ KL N +  +    R      +  +K LGA +V+
Sbjct: 166 ---PGKDW-FIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVI 221

Query: 116 DYKTPDGAALKS-------PSGRKYDAVIHCATGIPWSTFEPN---LGTNGKVI------ 159
                +              SG +    ++C  G    +       L  NG ++      
Sbjct: 222 TEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGG---KSSTGIARKLNNNGLMLTYGGMS 278

Query: 160 -DITPGPSAMLTFALKKLTF----------SKKQLVPLLLIPKRENLDFLVKLVKEGKLK 208
                 P+++  F  K  T           + K+L       K   L+ ++   +EGKL 
Sbjct: 279 FQPVTIPTSLYIF--KNFTSAGFWVTELLKNNKEL-------KTSTLNQIIAWYEEGKLT 329

Query: 209 TVINSKHPLS---KAEDAWAESIDGHATGKIIV 238
              + +          + + + +     GK ++
Sbjct: 330 DAKSIETLYDGTKPLHELYQDGVANSKDGKQLI 362

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 92.3 bits (230), Expect = 2e-22
 Identities = 67/249 (26%), Positives = 96/249 (38%), Gaps = 28/249 (11%)

Query: 9   VSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQK 68
            +   G  +E  V  E++ V     VS  + + L + GLT    L Q+  VK    G+  
Sbjct: 88  GTGPLGAYSEVHVLPEANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVK---PGE-- 142

Query: 69  NILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPDGAA--L 125
            IL  AA+GGVG  A Q AK     +  +          K+LGA E +DY   D A   L
Sbjct: 143 IILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVL 202

Query: 126 KSPSGRKYDAVIHCATGIPWSTFEPNLG---TNGKVIDITPGPS--AMLTFALKKLTFSK 180
           +   G+K   V     G+   T+  +L      G V+    G +   +    L  L   K
Sbjct: 203 ELTDGKKCPVVYD---GVGQDTWLTSLDSVAPRGLVVSF--GNASGPVSGVNLGIL-AQK 256

Query: 181 KQLV---PLLL--IPKRENLDF----LVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGH 231
             +    P L       +NL      L  ++  GKLK     ++ L  A  A  E     
Sbjct: 257 DSVYVTRPTLGSYANNAQNLQTMADELFDMLASGKLKVDGIEQYALKDAAKAQIELSARR 316

Query: 232 ATGKIIVEP 240
            TG  I+ P
Sbjct: 317 TTGSTILIP 325

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 89.2 bits (222), Expect = 3e-21
 Identities = 54/250 (21%), Positives = 85/250 (34%), Gaps = 27/250 (10%)

Query: 9   VSHNGGGLAEFAVAKESSTVARPSEVSA--AEGSGLPVAGLTAHQALTQSAGVKLDGSGQ 66
                G  ++  +      +  P ++       +GL + G+TA   L Q+  VK    G 
Sbjct: 91  CLPPLGAYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVK---PGD 147

Query: 67  QKNILVTAASGGVGHYAVQLAKLGNTHV--TASCGARNIEFVKSLGADEVLDYKTPDGAA 124
              +L+ AA+GG+GH  V  A+     V  T S   +  E  + LG    ++Y T D A 
Sbjct: 148 --YVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEK-AETARKLGCHHTINYSTQDFAE 204

Query: 125 --LKSPSGRKYDAVIHCATGIPWSTFEPNLG---TNGKVI-------DITPGPSAMLTFA 172
              +   G+  D V      I   T + +L      G             P         
Sbjct: 205 VVREITGGKGVDVVYD---SIGKDTLQKSLDCLRPRGMCAAYGHASGVADPIRVVEDLGV 261

Query: 173 LKKLTFSKKQLVPLLLIPK--RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDG 230
              L  ++  L   +       E    L   VK G L + +    PL +A  A       
Sbjct: 262 RGSLFITRPALWHYMSNRSEIDEGSKCLFDAVKAGVLHSSVAKTFPLREAAAAHKYMGGR 321

Query: 231 HATGKIIVEP 240
              G I++ P
Sbjct: 322 QTIGSIVLLP 331

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 89.2 bits (222), Expect = 4e-21
 Identities = 55/251 (21%), Positives = 93/251 (37%), Gaps = 26/251 (10%)

Query: 6   RIDVSHNGGGLAEFAVAKESSTVARPSEVS---AAEGSGLPVAGLTAHQALTQSAGVKLD 62
           ++    N        ++ +   +  P   S       +   +  LTA     ++  VK  
Sbjct: 90  QVAYISNSTFAQYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVK-- 147

Query: 63  GSGQQKNILVTAASGGVGHYAVQLAKLGNTHV--TASCGARNIEFVKSLGADEVLDYKTP 120
             G    +L+ AA+GGVG    QL K+   H    AS     ++  K  GA+ +++    
Sbjct: 148 -KGD--YVLLFAAAGGVGLILNQLLKMKGAHTIAVAS-TDEKLKIAKEYGAEYLINASKE 203

Query: 121 DGAA--LKSPSGRKYDAVIHCATGIPWSTFEPNLG---TNGKVIDI-----TPGPSAMLT 170
           D     LK  +G+  DA       +   TFE +L      G  +          P ++  
Sbjct: 204 DILRQVLKFTNGKGVDASFD---SVGKDTFEISLAALKRKGVFVSFGNASGLIPPFSITR 260

Query: 171 FALKKLTFSKKQLVPLLLIPK--RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESI 228
            + K +T  + QL   +  P+  +   D    LV   KL   I   +PL     A A+  
Sbjct: 261 LSPKNITLVRPQLYGYIADPEEWKYYSDEFFGLVNSKKLNIKIYKTYPLRDYRTAAADIE 320

Query: 229 DGHATGKIIVE 239
                GK+++E
Sbjct: 321 SRKTVGKLVLE 331

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 84.6 bits (209), Expect = 3e-19
 Identities = 37/257 (14%), Positives = 74/257 (28%), Gaps = 34/257 (13%)

Query: 12  NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNIL 71
            G   +++        +  P   + A+G+   V  LTA   + ++  ++         ++
Sbjct: 123 GGAMYSQYRCIPADQCLVLPEGATPADGASSFVNPLTAL-GMVETMRLE-----GHSALV 176

Query: 72  VTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPD--------- 121
            TAA+  +G    Q+       +          + +K+ GA  V +  +P          
Sbjct: 177 HTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLKAQGAVHVCNAASPTFMQDLTEAL 236

Query: 122 -----GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDIT--------PGPSAM 168
                  A  +  G K    I        +         G                P+  
Sbjct: 237 VSTGATIAFDATGGGKLGGQILTCMEAALNKSAREYSRYGSTTHKQVYLYGGLDTSPTEF 296

Query: 169 LTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVK---EGKLKTVINSKHPLSKAEDAWA 225
                         L P L    RE  + L + V    +    +  + +  L++  D   
Sbjct: 297 NRNFGMAWGMGGWLLFPFLQKIGRERANALKQRVVAELKTTFASHYSKEISLAEVLDLDM 356

Query: 226 -ESIDGHAT-GKIIVEP 240
               +  AT  K ++ P
Sbjct: 357 IAVYNKRATGEKYLINP 373

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score = 83.8 bits (208), Expect = 4e-19
 Identities = 50/244 (20%), Positives = 89/244 (36%), Gaps = 36/244 (14%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           GG +E+ + K S  + + + +S  E + L  AG T+  A+ Q+       +     +++ 
Sbjct: 120 GGFSEYMLVKSSRWLVKLNSLSPVEAAPLADAGTTSMGAIRQALPFISKFAEP---VVIV 176

Query: 74  AASGGVGHYAVQLAK--LGNTHVTA-SCGARNIEFVKSLGADEVLDYKTPDGAALKSPSG 130
              GG+  Y +Q+ K  + N  +   S   ++ +F   LGAD V + K  +    K   G
Sbjct: 177 NGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDG 236

Query: 131 RKYDAVIHCATGIPWSTFEP---NLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLL 187
                 I    G    T       L   G +I +      +              L    
Sbjct: 237 LGASIAIDLV-GTE-ETTYNLGKLLAQEGAIILVGMEGKRV-------------SLEAFD 281

Query: 188 LIPK-----------RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKI 236
                            +L+ +V+L + GK+K  I  K PL     A+    +G   G+ 
Sbjct: 282 TAVWNKKLLGSNYGSLNDLEDVVRLSESGKIKPYI-IKVPLDDINKAFTNLDEGRVDGRQ 340

Query: 237 IVEP 240
           ++ P
Sbjct: 341 VITP 344

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score = 81.9 bits (203), Expect = 1e-18
 Identities = 56/246 (22%), Positives = 91/246 (36%), Gaps = 30/246 (12%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           G  +             P+ +S  + +   + GLT +  L ++  +K     +    L  
Sbjct: 93  GAYSSVHNIIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIK---PDE--QFLFH 147

Query: 74  AASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPDGAA--LKSPSG 130
           AA+GGVG  A Q AK     +  + G A+  +     GA +V++Y+  D      +   G
Sbjct: 148 AAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGG 207

Query: 131 RKYDAVIHCATGIPWSTFEPNLG---TNGKVIDITPGPS--AMLTFALKKLTFSKKQLV- 184
           +K   V      +   T+E +L      G ++    G S  A+    L  L   K  L  
Sbjct: 208 KKVRVVYD---SVGRDTWERSLDCLQRRGLMVSF--GNSSGAVTGVNLGIL-NQKGSLYV 261

Query: 185 --PLLL--IPKRENLDF----LVKLVKEGKLKTVINSKH--PLSKAEDAWAESIDGHATG 234
             P L   I  RE L      L  L+  G +K  +  +   PL  A+ A          G
Sbjct: 262 TRPSLQGYITTREELTEASNELFSLIASGVIKVDVAEQQKYPLKDAQRAHEILESRATQG 321

Query: 235 KIIVEP 240
             ++ P
Sbjct: 322 SSLLIP 327

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score = 77.7 bits (192), Expect = 6e-17
 Identities = 60/236 (25%), Positives = 101/236 (42%), Gaps = 20/236 (8%)

Query: 14  GGLAEFAVAKESSTVARPSEVS---AAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNI 70
           GG AEF      S +  P ++S     E + L  AG+TA++A+ ++A     G+     +
Sbjct: 135 GGFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGA----YV 190

Query: 71  LVTAASGGVGHYAVQLAK-LGNTHVTA-SCGARNIEFVKSLGADEVLDYKTPDGAALKSP 128
            +    GG+GH AVQL K +    V A       ++  + LGAD V+D +      +   
Sbjct: 191 AIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMEL 249

Query: 129 S-GRKYDAVIHCATGIPWSTFEP---NLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLV 184
           + GR  +  +    G   +T +     LG  G++I +  G    L F   ++  S+    
Sbjct: 250 TRGRGVNVAMDFV-GSQ-ATVDYTPYLLGRMGRLIIV--GYGGELRFPTIRVISSEVSFE 305

Query: 185 PLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP 240
             L+    E L  LV L  +GK++  +   H L +  D       G   G+ ++ P
Sbjct: 306 GSLVGNYVE-LHELVTLALQGKVRVEV-DIHKLDEINDVLERLEKGEVLGRAVLIP 359

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score = 71.5 bits (176), Expect = 8e-15
 Identities = 44/233 (18%), Positives = 87/233 (37%), Gaps = 16/233 (6%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           G +AE+ +   +  +    ++     + L  AGLT + A+++   +   GS      +V 
Sbjct: 123 GSMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISRVLPLLGPGS----TAVVI 178

Query: 74  AASGGVGHYAVQLAK-LGNTHVTA-SCGARNIEFVKSLGADEVLDYKTPDGAALKSPS-G 130
              GG+GH  +Q+ + +    V A       +   + +GAD  +        A++  + G
Sbjct: 179 GV-GGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGG 237

Query: 131 RKYDAVIHCATGIPWSTFE---PNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLL 187
           +   AV     G   ST +     +  +G +  +     A        +      +V   
Sbjct: 238 QGATAVFDFV-GAQ-STIDTAQQVVAVDGHISVVGIHAGAHAKVGF-FMIPFGASVVTPY 294

Query: 188 LIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP 240
              + E L  +V L + G+L         L +   A+    +G   G+ +V P
Sbjct: 295 WGTRSE-LMEVVALARAGRLDIHT-ETFTLDEGPAAYRRLREGSIRGRGVVVP 345

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* Length = 357

 Score = 68.4 bits (168), Expect = 9e-14
 Identities = 51/280 (18%), Positives = 85/280 (30%), Gaps = 80/280 (28%)

Query: 9   VSHNGGGLAEFAVAKESS-----TVARPSEVSAAEGS-GLPVAGLTAHQALTQSAGVKLD 62
           V+          +   +S            +S   G+ G+P  GLT+   + +   +   
Sbjct: 102 VTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMP--GLTSLIGIQEKGHIT-- 157

Query: 63  GSGQQKNILVTAASGGVGHYAVQLAKL-GNTHVTASCG-ARNIEFVKS-LGADEVLDYKT 119
            +G  K ++V+ A+G  G  A Q+    G + V   CG       + S LG D  ++YK 
Sbjct: 158 -AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKK 216

Query: 120 PD-GAALKS--PS----------GRKYDAVIHCATGIPWSTFEPNLGTNGKVI------- 159
            +    L+   P+          G   D VI              +  N  +I       
Sbjct: 217 DNVAEQLRESCPAGVDVYFDNVGGNISDTVI------------SQMNENSHIILCGQISQ 264

Query: 160 ----DITPGPSAMLTFALKKLTFSKKQLVPLLLIPKR----------------ENLDFLV 199
                  P P +                +  +   +                   +  L 
Sbjct: 265 YNKDVPYPPPLSP--------------AIEAIQKERNITRERFLVLNYKDKFEPGILQLS 310

Query: 200 KLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVE 239
           +  KEGKLK      + L     A+   + G   GK IV 
Sbjct: 311 QWFKEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIVC 350

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 69.0 bits (169), Expect = 1e-13
 Identities = 53/240 (22%), Positives = 92/240 (38%), Gaps = 25/240 (10%)

Query: 13  GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILV 72
                  AVA        P+  S A  + +P+  LTA+ AL   AG++    G+  ++LV
Sbjct: 297 PKAFGPLAVADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLAGLR---PGE--SLLV 351

Query: 73  TAASGGVGHYAVQLAKLGNTHV--TASCGARNIEFVKSLGADEVLDYKTPDGAA--LKSP 128
            +A+GGVG  A+QLA+     V  TAS           L  + +   +T D     L + 
Sbjct: 352 HSAAGGVGMAAIQLARHLGAEVYATASEDKWQ-AV--ELSREHLASSRTCDFEQQFLGAT 408

Query: 129 SGRKYDAVIHCATG----IPWSTFEPNLGTNGKVIDI----TPGPSAMLTFALKKLTFSK 180
            GR  D V++   G             L   G+ +++       P  +       +++  
Sbjct: 409 GGRGVDVVLNSLAGEFADASLRM----LPRGGRFLELGKTDVRDPVEVADA-HPGVSYQA 463

Query: 181 KQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP 240
              V        E L  LV+L +   L+ +  +   + +A +A          GK+++  
Sbjct: 464 FDTVEAGPQRIGEMLHELVELFEGRVLEPLPVTAWDVRQAPEALRHLSQARHVGKLVLTM 523

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score = 67.2 bits (165), Expect = 2e-13
 Identities = 52/238 (21%), Positives = 92/238 (38%), Gaps = 32/238 (13%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           GG  E+ VA  +     P +V   E + +  AG+T ++ L  +   +    GQ    +V 
Sbjct: 120 GGYGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTVYKGLKVT-DTR---PGQ---WVVI 172

Query: 74  AASGGVGHYAVQLAKLGNTHVTA-SCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRK 132
           +  GG+GH AVQ A+     V A       +   + LGA+  ++ +  D AA        
Sbjct: 173 SGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGG 232

Query: 133 YDAVIHCAT-GIPWSTFEPNLGTNGKVID--ITPGPSAMLTFAL--KKLTF------SKK 181
              V+  A     +S     +   G +    + PG      F +  K +T       ++ 
Sbjct: 233 AHGVLVTAVSPKAFSQAIGMVRRGGTIALNGLPPGDFGTPIFDVVLKGITIRGSIVGTRS 292

Query: 182 QLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVE 239
            L        +E+LDF       G +K  + S   L    D +    +G   G+++++
Sbjct: 293 DL--------QESLDF----AAHGDVKATV-STAKLDDVNDVFGRLREGKVEGRVVLD 337

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score = 66.4 bits (163), Expect = 5e-13
 Identities = 44/165 (26%), Positives = 69/165 (41%), Gaps = 13/165 (7%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           GG AE+  A     V  P  +S  E + +  AG+T ++AL  + G K    G+    +  
Sbjct: 118 GGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVT-GAK---PGE---WVAI 170

Query: 74  AASGGVGHYAVQLAKLGNTHVTA-SCGARNIEFVKSLGADEVLDYKTPD-GAALKSPSGR 131
              GG+GH AVQ AK    +V A   G   +E  K LGAD V++    D    +K   G 
Sbjct: 171 YGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGG 230

Query: 132 KYDAVIHCA-TGIPWSTFEPNLGTNGKVIDI--TPGPSAMLTFAL 173
              A +  A +   + +   ++   G  + +   P    +  F  
Sbjct: 231 -VHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDT 274

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* Length = 330

 Score = 66.2 bits (162), Expect = 6e-13
 Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 4/137 (2%)

Query: 2   CNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKL 61
              + + VS +GG L+E+A       V  P  +S  E      AG TA  AL+     + 
Sbjct: 89  ATSYELGVSRDGG-LSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTA--ALSVHRLEQN 145

Query: 62  DGSGQQKNILVTAASGGVGHYAVQ-LAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTP 120
             S ++ ++LVT A+GGVG  AV  L K G   V ++      +++K LGA EV+  +  
Sbjct: 146 GLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDV 205

Query: 121 DGAALKSPSGRKYDAVI 137
               LK+ S +++   +
Sbjct: 206 YDGTLKALSKQQWQGAV 222

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* Length = 333

 Score = 64.9 bits (159), Expect = 2e-12
 Identities = 60/228 (26%), Positives = 90/228 (39%), Gaps = 53/228 (23%)

Query: 41  GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG- 99
           G+P  GLTA+  L +  GVK    G+   +LV+AA+G VG    Q+AKL    V  + G 
Sbjct: 127 GMP--GLTAYFGLLEVCGVK---GGE--TVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGS 179

Query: 100 ARNIEFVKSLGADEVLDYKTPD--GAALKS--PS----------GRKYDAVIHCATGIPW 145
              I ++K +G D   +YKT +    ALK   P           G   + V+        
Sbjct: 180 DEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTVL-------- 231

Query: 146 STFEPNLGTNGKVI-----------DITPGPSAMLTFALKKLT---FSKKQLVPLLLIPK 191
                 +   GK+            D  P   +  +   K+L    F    +V       
Sbjct: 232 ----SQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGF----IVYRWQGDV 283

Query: 192 REN-LDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIV 238
           RE  L  L+K V EGK++   +          A+ E ++G   GK +V
Sbjct: 284 REKALRDLMKWVLEGKIQYHEHVTKGFENMPAAFIEMLNGANLGKAVV 331

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512

 Score = 65.7 bits (160), Expect = 2e-12
 Identities = 48/241 (19%), Positives = 99/241 (41%), Gaps = 20/241 (8%)

Query: 13   GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILV 72
              GLA   +  + +T   PS  +  E + +P+   TA+ +L     ++    G+  ++L+
Sbjct: 1619 AEGLATSVLLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRGRMQ---PGE--SVLI 1673

Query: 73   TAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKS----LGADEVLDYKTPDGAA--L 125
             + SGGVG  A+ +A      V  + G A    ++++    L      + +        L
Sbjct: 1674 HSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQLDETCFANSRDTSFEQHVL 1733

Query: 126  KSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVI-----DITPGPSAMLTFALKKLTFSK 180
            +  +G+  D V++             L  +G+ +     D++   +  +   LK +TF  
Sbjct: 1734 RHTAGKGVDLVLNSLAEEKLQASVRCLAQHGRFLEIGKFDLSNNHALGMAVFLKNVTFHG 1793

Query: 181  KQLVPLLLIP---KRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKII 237
              L  L        +E  + L   ++EG ++ +  +  P +K E A+     G   GK++
Sbjct: 1794 ILLDSLFEEGGATWQEVSELLKAGIQEGVVQPLKCTVFPRTKVEAAFRYMAQGKHIGKVV 1853

Query: 238  V 238
            +
Sbjct: 1854 I 1854

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 Length = 328

 Score = 63.5 bits (155), Expect = 4e-12
 Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 4/137 (2%)

Query: 2   CNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKL 61
              + I V+H GG  +E+A       V  P  ++  E   +  AG TA  ++      + 
Sbjct: 88  ATGYEIGVTHFGG-YSEYARLHGEWLVPLPKGLTLKEAMAIGTAGFTAALSIH--RLEEH 144

Query: 62  DGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTP 120
             + ++  +LVT A+GGVG  AV +       V AS G A   ++++ LGA EVL  +  
Sbjct: 145 GLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDV 204

Query: 121 DGAALKSPSGRKYDAVI 137
               ++    +++ A +
Sbjct: 205 MAERIRPLDKQRWAAAV 221

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score = 63.7 bits (156), Expect = 4e-12
 Identities = 31/150 (20%), Positives = 59/150 (39%), Gaps = 10/150 (6%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           G   ++A A        P     A+ + +  AG+T ++AL  +  +    +G    + ++
Sbjct: 123 GSFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYKALKSA-NLM---AGHW--VAIS 176

Query: 74  AASGGVGHYAVQLAKLGNTHVTA-SCGARNIEFVKSLGADEVLDYKTPD--GAALKSPSG 130
            A+GG+G  AVQ AK     V     G    E  +S+G +  +D+        A+   + 
Sbjct: 177 GAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATD 236

Query: 131 RKYDAVIHCA-TGIPWSTFEPNLGTNGKVI 159
                VI+ + +          +  NG  +
Sbjct: 237 GGAHGVINVSVSEAAIEASTRYVRANGTTV 266

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score = 63.5 bits (155), Expect = 5e-12
 Identities = 38/258 (14%), Positives = 74/258 (28%), Gaps = 45/258 (17%)

Query: 11  HNGGGLAEFAVAKESSTVARPSEVSAAEGS-GLPVAGLT------AHQALTQSAGVKLDG 63
           +  G  AE+         +        EG        L        +  + +  G++   
Sbjct: 156 NVDGAFAEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPG- 214

Query: 64  SGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNI----------EFVKSLGADE 113
                N+++    G +G  AV + K          GA  +             K LGAD 
Sbjct: 215 ----DNVVILGG-GPIGLAAVAILKH--------AGASKVILSEPSEVRRNLAKELGADH 261

Query: 114 VLDYKTPDGAA--LKSPSGRKYDAVIHCATGIPWSTFEPNL--------GTNGKVIDITP 163
           V+D    +     L   +G      +    G+P     P +        G N  V  I  
Sbjct: 262 VIDPTKENFVEAVLDYTNGLGAKLFLEAT-GVP-QLVWPQIEEVIWRARGINATVA-IVA 318

Query: 164 GPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEG-KLKTVINSKHPLSKAED 222
              A +    +     + Q+V             ++ L+  G  +  +I+    + +  +
Sbjct: 319 RADAKIPLTGEVFQVRRAQIVGSQGHSGHGTFPRVISLMASGMDMTKIISKTVSMEEIPE 378

Query: 223 AWAESIDGHATGKIIVEP 240
                    +  K+ +  
Sbjct: 379 YIKRLQTDKSLVKVTMLN 396

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score = 63.4 bits (155), Expect = 6e-12
 Identities = 46/257 (17%), Positives = 90/257 (35%), Gaps = 47/257 (18%)

Query: 10  SHNGGGLAEFAVAKESSTVARPSEVSAAEGSGL-PVAGLTAHQALTQSAGVKLDGSGQQK 68
           S   GG AE+ V K  +  A P+++   +G+ + P+       A    A    +     K
Sbjct: 111 SRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIEPIT--VGLHAFHL-AQGCEN-----K 162

Query: 69  NILVTAASGGVGHYAVQLAKLGNTHVTASCGARNI----------EFVKSLGADEVLDYK 118
           N+++  A G +G  A+Q A           GA+++             KS GA +  +  
Sbjct: 163 NVIIIGA-GTIGLLAIQCAVA--------LGAKSVTAIDISSEKLALAKSFGAMQTFNSS 213

Query: 119 TPDGAAL--KSPSGRKYDAVIHCATGIPWSTFE---PNLGTNGKV--IDITPGPSAMLTF 171
                 +       R    ++  A G+P  T E      G + ++  +        + + 
Sbjct: 214 EMSAPQMQSVLRELRFNQLILETA-GVP-QTVELAVEIAGPHAQLALVGTLHQDLHLTSA 271

Query: 172 ALKKLTFSKKQL----VPLLLIPKRENLDFL--VKLVKEGKL--KTVINSKHPLSKAEDA 223
              K+    K+L      +         ++    +L+ E KL  + +I  +        A
Sbjct: 272 TFGKILR--KELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQA 329

Query: 224 WAESIDGHATGKIIVEP 240
             +       GK+++ P
Sbjct: 330 VRDIARNAMPGKVLLIP 346

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 Length = 198

 Score = 59.5 bits (145), Expect = 3e-11
 Identities = 46/209 (22%), Positives = 81/209 (38%), Gaps = 43/209 (20%)

Query: 25  SSTVAR-PSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYA 83
           S  V   P  ++  E +   VA LTA  +L +   +     G++  +L+ +A+GGVG  A
Sbjct: 1   SDLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLS---PGER--VLIHSATGGVGMAA 55

Query: 84  VQLAKLGNTHVTASCGARN-IEFVKSLGADEVLDYKTPDGAA--------------LKSP 128
           V +AK+    +  + G+    E +  LG + V D ++ D A               L S 
Sbjct: 56  VSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSL 115

Query: 129 SGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDI------TPGPSAMLTFALKKLTFSKKQ 182
           +G      +              L   G+ I++            +     K  +FS   
Sbjct: 116 AGEAIQRGVQI------------LAPGGRFIELGKKDVYADASLGLAAL-AKSASFSVVD 162

Query: 183 LVPLLLIPK---RENLDFLVKLVKEGKLK 208
           L   L +     R+ L  +++ V +GKL+
Sbjct: 163 LDLNLKLQPARYRQLLQHILQHVADGKLE 191

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* Length = 324

 Score = 59.6 bits (145), Expect = 9e-11
 Identities = 42/138 (30%), Positives = 58/138 (42%), Gaps = 8/138 (5%)

Query: 2   CNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKL 61
              W +  +H GG LAE A  K    VA P+ +S+     +  AG TA   +   A    
Sbjct: 85  LTGWGVGENHWGG-LAERARVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVM--ALEDA 141

Query: 62  DGSGQQKNILVTAASGGVGHYAVQ-LAKLGNTHVTASCGARNIEFVKSLGADEVLDYKT- 119
               Q   ++VT ASGGVG  AV  L KLG      S       ++KSLGA+ +L     
Sbjct: 142 GIRPQDGEVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANRILSRDEF 201

Query: 120 PDGAALKSPSGRKYDAVI 137
            +   L+      +   I
Sbjct: 202 AESRPLEKQ---LWAGAI 216

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score = 59.5 bits (145), Expect = 1e-10
 Identities = 44/254 (17%), Positives = 78/254 (30%), Gaps = 47/254 (18%)

Query: 10  SHNGGGLAEFAVAKESSTVARPSEVSAAEGSGL-PVAGLTAHQALTQSAGVKLDGSGQQK 68
            H  GG AE+ +         P  +    G+   P+A       +   +G+K        
Sbjct: 133 IHRDGGFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLA--CCLHGVDL-SGIKAG-----S 184

Query: 69  NILVTAASGGVGHYAVQLAKLGNTHVTASCGARNI----------EFVKSLGADEVLDYK 118
            + +    G +G   VQLA+L         GA  +             + +GA   +D  
Sbjct: 185 TVAILGG-GVIGLLTVQLARL--------AGATTVILSTRQATKRRLAEEVGATATVDPS 235

Query: 119 TPDGAA----LKSPSGRKYDAVIHCATGIPWSTFE---PNLGTNGKVIDI-TPGPSAMLT 170
             D                D VI CA G+   T +         G V+ +        + 
Sbjct: 236 AGDVVEAIAGPVGLVPGGVDVVIECA-GVA-ETVKQSTRLAKAGGTVVILGVLPQGEKVE 293

Query: 171 FALKKLTFSKKQLVPLLLIPKRENLDF--LVKLVKEGKL--KTVINSKHPLSKAEDAWAE 226
                + F + +++                  LV  G +    +I+ +  L +A D  + 
Sbjct: 294 IEPFDILFRELRVLGSF----INPFVHRRAADLVATGAIEIDRMISRRISLDEAPDVISN 349

Query: 227 SIDGHATGKIIVEP 240
                   K++V P
Sbjct: 350 PAAAGE-VKVLVIP 362

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* Length = 345

 Score = 59.1 bits (144), Expect = 1e-10
 Identities = 59/266 (22%), Positives = 101/266 (37%), Gaps = 59/266 (22%)

Query: 9   VSHNGGGLAEFAVAKESSTVARPSEVSAAEGS------GLPVAGLTAHQALTQSAGVKLD 62
           +        E++V    +      + +    S      G+P  G+TA+    +    K  
Sbjct: 100 LWGIVA-WEEYSVITPMTHAHFKIQHTDVPLSYYTGLLGMP--GMTAYAGFYEVCSPK-- 154

Query: 63  GSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKS-LGADEVLDYKT- 119
             G+   + V+AASG VG    QLAK+   +V  S G    ++ +K+  G D+  +YK  
Sbjct: 155 -EGE--TVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEE 211

Query: 120 PD-GAALKS--PS----------GRKYDAVIHCATGIPWSTFEPNLGTNGKVI------- 159
            D  AALK   P+          G+  DAV+             N+  +G++        
Sbjct: 212 SDLTAALKRCFPNGIDIYFENVGGKMLDAVL------------VNMNMHGRIAVCGMISQ 259

Query: 160 ---DITPGPSAMLTFALKKLT---FSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINS 213
              +   G   +     K+     F    +V        + L+F++  ++EGK+  V + 
Sbjct: 260 YNLENQEGVHNLSNIIYKRNRIQGF----VVSDFYDKYSKFLEFVLPHIREGKITYVEDV 315

Query: 214 KHPLSKAEDAWAESIDGHATGKIIVE 239
              L KA +A      G   GK +V 
Sbjct: 316 ADGLEKAPEALVGLFHGKNVGKQVVV 341

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score = 53.8 bits (130), Expect = 9e-09
 Identities = 57/256 (22%), Positives = 93/256 (36%), Gaps = 48/256 (18%)

Query: 9   VSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGL-PVAGLTAHQALTQSAGVKLDGSGQQ 67
              + G LA + V         P  VS  EG+ L P++      A  + AGV+L      
Sbjct: 118 TPPDDGNLARYYVHAADFCHKLPDNVSLEEGALLEPLS--VGVHACRR-AGVQL-----G 169

Query: 68  KNILVTAASGGVGHYAVQLAKLGNTHVTAS-CGARNIEFVKSLGADEVLDYKTPDG---- 122
             +LV  A G +G  +V  AK     V  +    R +E  K+ GAD  L           
Sbjct: 170 TTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESS 228

Query: 123 --AALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDIT-PGPSAMLTFALKKLTFS 179
               ++S  G   +  I C +G                I+IT  G + ML   +     S
Sbjct: 229 IIERIRSAIGDLPNVTIDC-SGNE-KCITI-------GINITRTGGTLML-VGM----GS 274

Query: 180 KKQLVPLLLIPKRENLDFL------------VKLVKEGK--LKTVINSKHPLSKAEDAWA 225
           +   VPL+    RE +D              +++V  G+  +K ++     L +  DA+ 
Sbjct: 275 QMVTVPLVNACARE-IDIKSVFRYCNDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFE 333

Query: 226 ESIDGHATG-KIIVEP 240
            +        K+++  
Sbjct: 334 AARKKADNTIKVMISC 349

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score = 52.2 bits (126), Expect = 3e-08
 Identities = 52/256 (20%), Positives = 93/256 (36%), Gaps = 51/256 (19%)

Query: 9   VSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGL-PVAGLTAHQALTQSAGVKLDGSGQQ 67
              + G L  F     +     P  V+  EG+ + P++      A  +  GV L      
Sbjct: 121 TPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLS--VGIHACRR-GGVTLG----- 172

Query: 68  KNILVTAASGGVGHYAVQLAK-LGNTHVTAS-CGARNIEFVKSLGADEVLDYKTPDG--- 122
             +LV  A G +G   + +AK +G   V  +   A  +   K +GAD VL          
Sbjct: 173 HKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEI 231

Query: 123 -AALKSPSGRKYDAVIHCATGIPWSTFEPNLGT---NGKVIDITPGPSAMLTFALKKLTF 178
              ++   G K +  I C TG   ++ +  +      G ++ +      +          
Sbjct: 232 ARKVEGQLGCKPEVTIEC-TGAE-ASIQAGIYATRSGGTLVLV-----GL---------G 275

Query: 179 SKKQLVPLLLIPKRENLDFL------------VKLVKEGK--LKTVINSKHPLSKAEDAW 224
           S+   VPLL    RE +D              + ++      +K ++  + PL KA +A+
Sbjct: 276 SEMTTVPLLHAAIRE-VDIKGVFRYCNTWPVAISMLASKSVNVKPLVTHRFPLEKALEAF 334

Query: 225 AESIDGHATGKIIVEP 240
                G    KI+++ 
Sbjct: 335 ETFKKGLG-LKIMLKC 349

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score = 51.5 bits (124), Expect = 5e-08
 Identities = 47/249 (18%), Positives = 79/249 (31%), Gaps = 40/249 (16%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGL-PVAGLTAHQALTQSAGVKLDGSGQQKNILV 72
           G ++EF  + E   V  P   +   G  + P++     +AL  +   +        +  V
Sbjct: 122 GYMSEFFTSPEKYLVRIPRSQA-ELGFLIEPIS--ITEKALEHAYASRSAFDWDPSSAFV 178

Query: 73  TAASGGVGHYAVQLAKLGNTHVTASCGARNI-------------EFVKSLGADEVLDYKT 119
               G +G   + + K+         G  N+             + ++ L A  V   +T
Sbjct: 179 LGN-GSLGLLTLAMLKV------DDKGYENLYCLGRRDRPDPTIDIIEELDATYVDSRQT 231

Query: 120 PDGAALKSPSGRKYDAVIHCATGIPWSTFEP---NLGTNGKVIDI-TPGPSAM---LTFA 172
           P             D +    TG P          L  NG    +  P   A        
Sbjct: 232 PVEDVPDVYEQ--MDFIYEA-TGFP-KHAIQSVQALAPNGVGALLGVPSDWAFEVDAGAF 287

Query: 173 LKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGK--LKTVINSKHPLSKAEDAWAESIDG 230
            +++    K LV  +           V   K  K  L+ ++   HPLS+ E A+    D 
Sbjct: 288 HREMVLHNKALVGSVNSHVEHFEAATVTFTKLPKWFLEDLVTGVHPLSEFEAAFD---DD 344

Query: 231 HATGKIIVE 239
             T K  +E
Sbjct: 345 DTTIKTAIE 353

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score = 51.4 bits (124), Expect = 6e-08
 Identities = 41/256 (16%), Positives = 81/256 (31%), Gaps = 36/256 (14%)

Query: 1   MCNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGL-PVAGLTAHQALTQSAGV 59
           +C   +I      GG AE+ V    +    P ++     + L P     A      +   
Sbjct: 106 VCLNTQILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFG--NAVHT-VYAGSG 162

Query: 60  KLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNI----------EFVKSL 109
                   K++L+T A G +G  A  + +          GA  I           F +  
Sbjct: 163 VSG-----KSVLITGA-GPIGLMAAMVVRA--------SGAGPILVSDPNPYRLAFARPY 208

Query: 110 GADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFE---PNLGTNGKVIDITPGPS 166
               V   +      ++  +G   + ++   +G   +        L   G+   +     
Sbjct: 209 ADRLVNPLEEDLLEVVRRVTGSGVEVLLEF-SGNE-AAIHQGLMALIPGGEARILGIPSD 266

Query: 167 AMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGK--LKTVINSKHPLSKAEDAW 224
            +      +L         +      +       LV  G+  L  ++  + PLS+  +A+
Sbjct: 267 PIRFDLAGELVMRGITAFGIAGRRLWQTWMQGTALVYSGRVDLSPLLTHRLPLSRYREAF 326

Query: 225 AESIDGHATGKIIVEP 240
                G A  K+I++P
Sbjct: 327 GLLASGQA-VKVILDP 341

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score = 51.5 bits (124), Expect = 7e-08
 Identities = 42/256 (16%), Positives = 75/256 (29%), Gaps = 45/256 (17%)

Query: 10  SHNGGGLAEFAVAKESSTVAR-PSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQK 68
            H  G  +   V    + V +   +      +    +G TA+ A  +       G     
Sbjct: 143 PHLRGCYSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGATAYHAFDEYPESFA-GK---- 197

Query: 69  NILVTAASGGVGHYAVQLAKLGNTHVTASCGARNI----------EFVKSLGADEVLDYK 118
            +++  A G +G + V +A+          GA N+          +  + +GAD  L+ +
Sbjct: 198 TVVIQGA-GPLGLFGVVIARS--------LGAENVIVIAGSPNRLKLAEEIGADLTLNRR 248

Query: 119 TPDGAALKSP-----SGRKYDAVIHCATGIPWSTFEPNLGT---NGKVIDI-TPGPSAML 169
                  +        GR  D ++   TG                G         P   +
Sbjct: 249 ETSVEERRKAIMDITHGRGADFILEA-TGDS-RALLEGSELLRRGGFYSVAGVAVPQDPV 306

Query: 170 TF-ALKKLTFSKKQLVPLLLIPKRENLDF--LVKLVKEGKLK--TVINSKHPLSKAEDAW 224
            F   + L            I   +   F   V +          +I  + PL +A  A 
Sbjct: 307 PFKVYEWLVLKNATFKG---IWVSDTSHFVKTVSITSRNYQLLSKLITHRLPLKEANKAL 363

Query: 225 AESIDGHATGKIIVEP 240
                  A  K+I+ P
Sbjct: 364 ELMESREA-LKVILYP 378

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score = 45.3 bits (108), Expect = 6e-06
 Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 18/167 (10%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           GG A+  V  +   V  P  ++  + + L  AG+T +  L+      L   G +  IL  
Sbjct: 133 GGFAKATVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHF---GLKQPGLRGGILGL 189

Query: 74  AASGGVGHYAVQLAK-LGNTHVTA---SCGARNIEFVKSLGADEVLDYKTPDGAALKSPS 129
              GGVGH  V++AK +G  HVT    S   R  E ++ LGAD+ +     D A +   +
Sbjct: 190 ---GGVGHMGVKIAKAMG-HHVTVISSSNKKRE-EALQDLGADDYVI--GSDQAKMSELA 242

Query: 130 GRKYDAVIHCA-TGIPWSTFEPNLGTNGK--VIDITPGPSAMLTFAL 173
               D VI           +   L  +GK  ++ +   P   LT  L
Sbjct: 243 DS-LDYVIDTVPVHHALEPYLSLLKLDGKLILMGVINNPLQFLTPLL 288

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score = 45.3 bits (108), Expect = 6e-06
 Identities = 31/178 (17%), Positives = 57/178 (32%), Gaps = 27/178 (15%)

Query: 7   IDVSHNG----GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLD 62
           +D  H+     GG +   V  E+  ++        + + L  AG+T +  L   + V   
Sbjct: 119 LDSFHDNEPHMGGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGITTYSPLKF-SKV--- 174

Query: 63  GSGQQKNILVTAASGGVGHYAVQLAK-LGNTHVTA-SCGARNIEFVKSLGADEVLDYKTP 120
             G +  +      GG+G  AV+ A  +G   V+  +      +   S+G         P
Sbjct: 175 TKGTKVGVA---GFGGLGSMAVKYAVAMG-AEVSVFARNEHKKQDALSMGVKHFYT--DP 228

Query: 121 DGAALKSPSGRKYDAVIHCA-TGIPWSTFEPNLGTNGKVIDI----TPGPSAMLTFAL 173
                      + D +I    T      +   L  NG +  +          +  F  
Sbjct: 229 KQCK------EELDFIISTIPTHYDLKDYLKLLTYNGDLALVGLPPVEVAPVLSVFDF 280

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 7/86 (8%)

Query: 77  GGVGHYAVQLAK-LGNTHVTA-SCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYD 134
           GG+GH  ++LA  +G  HV A +      E  K+LGADEV++  + +   + +     +D
Sbjct: 204 GGLGHMGIKLAHAMG-AHVVAFTTSEAKREAAKALGADEVVN--SRNADEMAAHLKS-FD 259

Query: 135 AVIHCA-TGIPWSTFEPNLGTNGKVI 159
            +++          F   L  +G + 
Sbjct: 260 FILNTVAAPHNLDDFTTLLKRDGTMT 285

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 16/151 (10%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT 73
           GG +   VA E   +  P  +    G+ L  AG+T +  L       LD  G+   I+  
Sbjct: 140 GGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGITVYSPLKYF---GLDEPGKHIGIV-- 194

Query: 74  AASGGVGHYAVQLAK-LGNTHVTA---SCGARNIEFVKSLGADEVLDYKTPDGAALKSPS 129
              GG+GH AV+ AK  G + VT    S   +  E +K+ GAD  L   + D   +++ +
Sbjct: 195 -GLGGLGHVAVKFAKAFG-SKVTVISTSPSKKE-EALKNFGADSFLV--SRDQEQMQAAA 249

Query: 130 GRKYDAVIHCA-TGIPWSTFEPNLGTNGKVI 159
           G   D +I       P       L ++GK+I
Sbjct: 250 GT-LDGIIDTVSAVHPLLPLFGLLKSHGKLI 279

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 51/258 (19%), Positives = 88/258 (34%), Gaps = 42/258 (16%)

Query: 1   MCNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGL-PVAGLTAHQALTQSAGV 59
           +C   +I      G  AE+AV    +    P  +     +   P+    A   +      
Sbjct: 110 VCQNTKIFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLG--NAVDTVLA---- 163

Query: 60  KLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNI----------EFVKSL 109
              G    K++L+T A G +G   + +AK          GA  +          E  K +
Sbjct: 164 ---GPISGKSVLITGA-GPLGLLGIAVAKA--------SGAYPVIVSEPSDFRRELAKKV 211

Query: 110 GADEVLDYKTPDGAA--LKSPSGRKYDAVIHCATGIPWSTFE---PNLGTNGKVIDITPG 164
           GAD V++    D     +    G   D  +   +G P    E     +   G+V  +   
Sbjct: 212 GADYVINPFEEDVVKEVMDITDGNGVDVFLEF-SGAP-KALEQGLQAVTPAGRVS-LLGL 268

Query: 165 PSAMLTFALKKLTFSK-KQLVPLLLIPKRENLDFLVKLVKEGKL--KTVINSKHP-LSKA 220
               +T     L   K   +  +      E    + +L++ GKL    +I  K+    K 
Sbjct: 269 YPGKVTIDFNNLIIFKALTIYGITGRHLWETWYTVSRLLQSGKLNLDPIITHKYKGFDKY 328

Query: 221 EDAWAESIDGHATGKIIV 238
           E+A+     G   GK++ 
Sbjct: 329 EEAFELMRAGKT-GKVVF 345

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 49/267 (18%), Positives = 87/267 (32%), Gaps = 70/267 (26%)

Query: 9   VSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGL-PVAGLTAHQALTQSAGVKLDGSGQQ 67
                G L  +              +S   G+ L P++   A   L + AGV+L      
Sbjct: 130 TPPVPGLLRRYVNHPAVWCHKIG-NMSYENGAMLEPLS--VALAGLQR-AGVRLG----- 180

Query: 68  KNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNI----------EFVKSLGADEVLDY 117
             +L+  A G +G   +  AK        + GA  +          +F K +  + V   
Sbjct: 181 DPVLICGA-GPIGLITMLCAK--------AAGACPLVITDIDEGRLKFAKEICPEVVTHK 231

Query: 118 KTPDGA------ALKSPSGRKYDAVIHCATGIPWSTFE---PNLGTNGKVIDITPGPSAM 168
                A       ++S  G +    + C TG+  S+       +   GKV  I  G    
Sbjct: 232 VERLSAEESAKKIVESFGGIEPAVALEC-TGVE-SSIAAAIWAVKFGGKVFVIGVGK--- 286

Query: 169 LTFALKKLTFSKKQLVPLLLIPKRENLDFL------------VKLVKEGK--LKTVINSK 214
                       +  +P +    RE +D              ++LV+ G   L  ++  +
Sbjct: 287 -----------NEIQIPFMRASVRE-VDLQFQYRYCNTWPRAIRLVENGLVDLTRLVTHR 334

Query: 215 HPLSKAEDAWAESIDGHATG-KIIVEP 240
            PL  A  A+  + D      K+ ++ 
Sbjct: 335 FPLEDALKAFETASDPKTGAIKVQIQS 361

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score = 42.9 bits (102), Expect = 4e-05
 Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 11/113 (9%)

Query: 77  GGVGHYAVQLAK-LGNTHVTA-SCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYD 134
           GG+G     ++K +G       S  +R  E    +GAD  +   T +           +D
Sbjct: 189 GGIGSMGTLISKAMG-AETYVISRSSRKREDAMKMGADHYIA--TLEEGDWGEKYFDTFD 245

Query: 135 AVIHCA---TGIPWSTFEPNLGTNGKVIDITPG-PSAMLTFALKKLTFSKKQL 183
            ++ CA   T I ++     +   G+++ I    P      +LK        +
Sbjct: 246 LIVVCASSLTDIDFNIMPKAMKVGGRIVSI--SIPEQHEMLSLKPYGLKAVSI 296

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253

 Score = 41.8 bits (98), Expect = 7e-05
 Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 10/86 (11%)

Query: 64  SGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADE---VLDYKTP 120
           S     +LVT ASG  G    +  K G+    A    R+ +  + +G +    + D    
Sbjct: 1   SANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDA 60

Query: 121 D--GAALKSPSGRKYDAVIHCATGIP 144
           D    A +       DA++   + +P
Sbjct: 61  DSINPAFQG-----IDALVILTSAVP 81

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 39/252 (15%), Positives = 76/252 (30%), Gaps = 29/252 (11%)

Query: 9   VSHNGGGLAEFAVAKESSTVARPSEVSA----AE--GSGLPVAGLTAHQALTQSAGVKLD 62
           +    G + E+        V  P  +      A+                         D
Sbjct: 117 IHKMDGFMREWWYDDPKYLVKIPKSIEDIGILAQPLADIEKSIEEILEVQKRVPVWTCDD 176

Query: 63  GSGQQKNILVTAASGGVGHYAVQLAKL-GNTHVTASCGARN-IEFVKSLGADEVLDYKTP 120
           G+   + +LV    G +G     L +  G     A+      +E              + 
Sbjct: 177 GTLNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSN 235

Query: 121 DGAALKSPSGRKYDAVIHCATGIPWSTFE---PNLGTNGKVIDI---TPGPSAMLTFALK 174
               LK   G+ +D +I   TG   +      P LG NG +      T G   +    L+
Sbjct: 236 GYDKLKDSVGK-FDVIIDA-TGADVNILGNVIPLLGRNGVLGLFGFSTSGSVPLDYKTLQ 293

Query: 175 KLTFSKKQLVPLLLIPKRENLDF--LVKLVKEGK------LKTVINSKHPLSKAEDAWAE 226
           ++  + K ++ L+     +   F   V  +   K       K +I     ++  ++   +
Sbjct: 294 EIVHTNKTIIGLVN---GQKPHFQQAVVHLASWKTLYPKAAKMLITKTVSINDEKELL-K 349

Query: 227 SIDGHATGKIIV 238
            +     G+I +
Sbjct: 350 VLREKEHGEIKI 361

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 12/83 (14%)

Query: 69  NILVTAASGGVGHYAVQLAKLGNTHVTASCGARN---IEFVKSLGADEVLDYKTPD--GA 123
            +LV  A+G V  Y +   K       A    RN      ++  GA +++     +    
Sbjct: 23  RVLVVGANGKVARYLLSELKNKGHEPVA--MVRNEEQGPELRERGASDIVVANLEEDFSH 80

Query: 124 ALKSPSGRKYDAVIHCATGIPWS 146
           A  S      DAV+  A   P +
Sbjct: 81  AFAS-----IDAVVFAAGSGPHT 98

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 22/104 (21%), Positives = 31/104 (29%), Gaps = 14/104 (13%)

Query: 46  GLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAV-QLAKLGNTHVTASCGARNIE 104
           G + H     S    L   G  KN+L+  A G +  + + QLA       T    AR   
Sbjct: 2   GSSHHHHHHSSGRENLYFQGHMKNVLILGAGGQIARHVINQLADKQTIKQTL--FARQPA 59

Query: 105 FVKSLGADEV----LDYKTPDG--AALKSPSGRKYDAVIHCATG 142
            +             D         A++       D V    TG
Sbjct: 60  KIHKPYPTNSQIIMGDVLNHAALKQAMQG-----QDIVYANLTG 98

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 12/97 (12%)

Query: 69  NILVTAASGGVGHYAVQLAKLGNTHVTASCGARN---IEFVKSLGADEVLDYKTPDG--A 123
            I +  ++G VG   ++     +  + A  GAR    +    ++ A       TP+    
Sbjct: 2   KIFIVGSTGRVGKSLLKSLSTTDYQIYA--GARKVEQVPQYNNVKAVHFDVDWTPEEMAK 59

Query: 124 ALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVID 160
            L        DA+I+ +     S  + +L    K++ 
Sbjct: 60  QLHG-----MDAIINVSGSGGKSLLKVDLYGAVKLMQ 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
4eye_A	342	Probable oxidoreductase; structural genomics, niai	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	100.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	100.0
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	100.0
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	100.0
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	100.0
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	100.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	100.0
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	100.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	100.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	100.0
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	100.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	100.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	100.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	100.0
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	100.0
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	100.0
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	100.0
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	100.0
3gms_A	340	Putative NADPH:quinone reductase; structural genom	100.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	100.0
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	100.0
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	100.0
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	100.0
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	100.0
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	100.0
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	100.0
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	100.0
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	100.0
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	100.0
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	100.0
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	100.0
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	100.0
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	100.0
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	100.0
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	100.0
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	100.0
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	99.97
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.97
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.93
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.95
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.89
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.82
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.82
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.7
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.63
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.49
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.21
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.13
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.02
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.0
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	97.98
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.98
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	97.96
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.93
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.9
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.84
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.81
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	97.79
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.78
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	97.77
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.69
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.67
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.65
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.59
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	97.55
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	97.52
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.51
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	97.51
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.46
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	97.45
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	97.41
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	97.41
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	97.41
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	97.39
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	97.39
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	97.37
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	97.36
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	97.36
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	97.36
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	97.35
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.34
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.34
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	97.33
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	97.33
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	97.33
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	97.32
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	97.31
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	97.31
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.31
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	97.29
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.29
3l07_A	285	Bifunctional protein fold; structural genomics, ID	97.28
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	97.27
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	97.27
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	97.27
4dqx_A	277	Probable oxidoreductase protein; structural genomi	97.27
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	97.26
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	97.26
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	97.26
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	97.26
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	97.25
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	97.25
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	97.24
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	97.24
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	97.24
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	97.23
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	97.22
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	97.22
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	97.21
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.21
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	97.21
3imf_A	257	Short chain dehydrogenase; structural genomics, in	97.2
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	97.2
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	97.2
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	97.2
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	97.2
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	97.2
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.19
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	97.19
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.19
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	97.19
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	97.19
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	97.19
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	97.18
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	97.18
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	97.17
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	97.17
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	97.17
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	97.17
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	97.17
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	97.17
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	97.16
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	97.16
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	97.16
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	97.15
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	97.15
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	97.15
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	97.14
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	97.14
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	97.14
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.14
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	97.13
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	97.13
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	97.13
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	97.12
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	97.12
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	97.11
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	97.11
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	97.1
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	97.1
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	97.1
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.1
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	97.09
3rih_A	293	Short chain dehydrogenase or reductase; structural	97.09
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	97.09
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	97.09
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	97.08
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	97.08
3cxt_A	291	Dehydrogenase with different specificities; rossma	97.08
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.08
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	97.08
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	97.07
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	97.07
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	97.07
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	97.07
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	97.07
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	97.07
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	97.07
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	97.06
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	97.06
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	97.06
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	97.06
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	97.05
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	97.05
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	97.05
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	97.05
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	97.05
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	97.05
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	97.04
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	97.04
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	97.04
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.04
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	97.04
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	97.04
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	97.03
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	97.03
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	97.03
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.03
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	97.02
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	97.02
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	97.02
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	97.02
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.0
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.0
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	97.0
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	97.0
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	96.99
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	96.98
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	96.98
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.98
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	96.98
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	96.98
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	96.98
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	96.98
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	96.97
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	96.97
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	96.97
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	96.96
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	96.96
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	96.96
1xq1_A	266	Putative tropinone reducatse; structural genomics,	96.96
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	96.96
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	96.95
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	96.95
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	96.94
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	96.94
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	96.94
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	96.94
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	96.93
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.93
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	96.93
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.92
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	96.92
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	96.92
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	96.92
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	96.92
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	96.91
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	96.9
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	96.9
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	96.9
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	96.9
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	96.89
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	96.89
1xkq_A	280	Short-chain reductase family member (5D234); parra	96.88
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	96.88
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	96.88
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.88
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	96.88
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	96.88
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	96.87
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	96.86
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	96.86
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	96.86
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.85
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	96.85
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	96.85
1xhl_A	297	Short-chain dehydrogenase/reductase family member	96.85
1spx_A	278	Short-chain reductase family member (5L265); paral	96.85
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.85
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	96.84
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	96.84
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	96.83
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	96.83
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	96.83
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	96.82
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	96.82
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	96.81
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	96.81
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	96.81
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	96.81
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	96.81
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	96.81
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	96.8
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.8
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	96.79
1xq6_A	253	Unknown protein; structural genomics, protein stru	96.78
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	96.78
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	96.77
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	96.76
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.74
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	96.74
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	96.73
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.72
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	96.72
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	96.71
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	96.7
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	96.7
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	96.7
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	96.69
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	96.69
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	96.69
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.67
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	96.67
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	96.67
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	96.66
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	96.66
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	96.66
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.66
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	96.65
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	96.64
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	96.64
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	96.64
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	96.64
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	96.63
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	96.63
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	96.63
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	96.63
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	96.62
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	96.62
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	96.62
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	96.62
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	96.61
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	96.61
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	96.6
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	96.59
2b25_A	336	Hypothetical protein; structural genomics, methyl	96.59
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	96.59
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.59
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	96.59
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	96.57
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	96.56
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.56
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	96.56
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	96.55
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.55
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	96.54
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.54
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.52
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	96.52
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	96.51
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	96.51
4f6c_A	427	AUSA reductase domain protein; thioester reductase	96.51
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	96.51
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	96.5
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	96.49
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	96.49
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	96.49
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	96.48
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	96.48
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	96.47
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	96.47
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	96.44
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	96.44
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	96.43
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	96.43
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	96.42
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	96.42
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	96.41
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	96.41
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	96.41
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.4
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	96.39
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	96.39
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	96.38
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	96.37
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	96.35
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	96.35
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	96.33
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	96.33
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	96.31
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	96.3
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	96.29
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	96.28
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	96.28
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	96.28
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	96.26
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	96.26
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	96.26
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	96.25
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	96.23
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	96.23
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	96.22
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	96.22
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	96.21
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.21
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	96.18
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	96.16
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	96.15
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	96.14
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	96.14
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	96.14
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	96.14
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	96.11
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	96.1
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	96.09
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	96.09
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	96.08
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	96.07
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	96.06
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	96.06
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	96.05
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	96.04
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	96.03
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	96.03
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	96.02
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	96.01
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	96.01
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	95.99
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	95.99
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.98
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	95.96
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	95.96
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	95.96
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	95.96
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	95.94
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	95.94
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	95.94
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	95.92
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	95.92
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	95.91
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	95.91
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	95.91
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	95.9
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	95.9
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	95.89
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	95.89
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	95.89
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	95.87
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	95.86
4f6l_B	508	AUSA reductase domain protein; thioester reductase	95.86
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	95.85
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	95.85
3f4k_A	257	Putative methyltransferase; structural genomics, P	95.83
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	95.82
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	95.82
4had_A	350	Probable oxidoreductase protein; structural genomi	95.81
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.8
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	95.8
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	95.79
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	95.78
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	95.77
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	95.76
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	95.72
4e4y_A	244	Short chain dehydrogenase family protein; structur	95.71
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	95.71
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	95.71
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	95.71
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	95.7
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	95.69
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	95.68
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	95.67
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	95.66
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	95.65
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	95.65
4ggo_A	401	Trans-2-enoyl-COA reductase; rossmann fold, oxidor	95.65
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	95.62
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	95.62
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	95.58
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	95.58
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	95.57
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	95.56
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	95.54
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	95.54
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	95.51
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	95.5
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	95.49
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	95.47
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	95.46
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	95.45
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	95.44
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	95.44
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	95.43
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	95.42
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	95.41
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	95.39
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	95.36
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	95.35
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	95.34
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	95.34
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	95.33
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	95.33
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	95.31
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	95.3
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	95.29
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	95.28
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	95.27
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	95.26
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	95.25

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=1.2e-39  Score=268.04  Aligned_cols=225  Identities=25%  Similarity=0.301  Sum_probs=196.7

Q ss_pred             cccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHH
Q 045248            8 DVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLA   87 (240)
Q Consensus         8 ~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a   87 (240)
                      .+...+|+|+||++++++.++++|+++++++||++++++.|||+++.+..++     ++|++|||+| +|++|++++|+|
T Consensus       136 ~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~-----~~g~~VlV~G-~G~vG~~a~qla  209 (363)
T 3uog_A          136 LGGAHPGVLSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLTAWFALVEKGHL-----RAGDRVVVQG-TGGVALFGLQIA  209 (363)
T ss_dssp             TTTTSCCCCBSEEEEEGGGEEECCTTSCHHHHHTTTTHHHHHHHHHTTTTCC-----CTTCEEEEES-SBHHHHHHHHHH
T ss_pred             cCcCCCCcceeEEEechHHeEECCCCCCHHHHhhcccHHHHHHHHHHHhcCC-----CCCCEEEEEC-CCHHHHHHHHHH
Confidence            3445689999999999999999999999999999999999999999888888     8999999999 999999999999


Q ss_pred             HhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCc-c-ccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248           88 KLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPD-G-AALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus        88 ~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~-~-~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      +.+|++|++++++ ++++.++++|++.+++....+ . ...+.+.+.++|++||++|++.+..++++++++|+++.+|..
T Consensus       210 ~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~  289 (363)
T 3uog_A          210 KATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILEIAGGAGLGQSLKAVAPDGRISVIGVL  289 (363)
T ss_dssp             HHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHEEEEEEEEEECCC
T ss_pred             HHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCChHHHHHHHHHhhcCCEEEEEecC
Confidence            9999999999965 889999999999999944344 2 233455667999999999988899999999999999999975


Q ss_pred             chHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          165 PSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      ......++...+..++.++.++.. ...+.++++++++++|+++++++++|+++++++||+.+.+++ .||+|+++
T Consensus       290 ~~~~~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~-~gKvvi~~  363 (363)
T 3uog_A          290 EGFEVSGPVGPLLLKSPVVQGISV-GHRRALEDLVGAVDRLGLKPVIDMRYKFTEVPEALAHLDRGP-FGKVVIEF  363 (363)
T ss_dssp             SSCEECCBTTHHHHTCCEEEECCC-CCHHHHHHHHHHHHHHTCCCCEEEEEEGGGHHHHHHTGGGCC-SBEEEEEC
T ss_pred             CCcccCcCHHHHHhCCcEEEEEec-CCHHHHHHHHHHHHcCCCccceeeEEcHHHHHHHHHHHHcCC-CccEEEeC
Confidence            543333445556678888888764 578899999999999999999999999999999999999999 99999975

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.8e-38  Score=260.70  Aligned_cols=227  Identities=23%  Similarity=0.335  Sum_probs=191.5

Q ss_pred             cccceecccCCCcccceEEEecCCceeeCCCCCChhhhh---hhchHHHHHHHHHHhh-hCCCcCCCCCCCeEEEEcCCc
Q 045248            2 CNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGS---GLPVAGLTAHQALTQS-AGVKLDGSGQQKNILVTAASG   77 (240)
Q Consensus         2 c~~~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa---~~~~~~~ta~~~l~~~-~~~~~~~~~~g~~vlV~G~~g   77 (240)
                      |++....|...+|+|+||++++++.++++|+++++++||   ++++++.|||+++.+. .++     ++|++|||+|+ |
T Consensus       123 C~~~~~~G~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~l~~~~~ta~~al~~~~~~~-----~~g~~VlV~Ga-G  196 (359)
T 1h2b_A          123 CENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTL-----YPGAYVAIVGV-G  196 (359)
T ss_dssp             CTTCBCBTTTBCCSSBSEEEECGGGEEECCTTCCHHHHHHTGGGGTHHHHHHHHHHHHHTTC-----CTTCEEEEECC-S
T ss_pred             CCCccccccCCCCcccceEEechHhEEECCCCCCHHHHhhccchhhhHHHHHHHHHhhccCC-----CCCCEEEEECC-C
Confidence            555555555678999999999999999999999999999   7888899999999655 788     89999999996 9


Q ss_pred             hHHHHHHHHHHhC-CCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccc-cccCCCCCcccEEEeCCCCC---CccccccC
Q 045248           78 GVGHYAVQLAKLG-NTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGA-ALKSPSGRKYDAVIHCATGI---PWSTFEPN  151 (240)
Q Consensus        78 ~vG~~~~~~a~~~-g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~-~~~~~~~~~~d~v~d~~g~~---~~~~~~~~  151 (240)
                      ++|++++|+|+.+ |++|++++++ ++++.++++|+++++++++.... ..+.+.+.++|++||++|++   .+..++++
T Consensus       197 ~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~v~~~~~g~g~Dvvid~~G~~~~~~~~~~~~~  276 (359)
T 1h2b_A          197 GLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLG  276 (359)
T ss_dssp             HHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEE
T ss_pred             HHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCEEEeccchHHHHHHHHhCCCCCcEEEECCCCchHHHHHHHhhc
Confidence            9999999999999 9999999964 89999999999999998764111 22334556899999999986   78888888


Q ss_pred             CCCCcEEEEeCCCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCC
Q 045248          152 LGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGH  231 (240)
Q Consensus       152 l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~  231 (240)
                        ++|+++.+|.....  .++...+..+++++.+++. ...++++++++++++|++++.+ ++|+++++++||+.+.+++
T Consensus       277 --~~G~~v~~g~~~~~--~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~l~~~g~l~~~i-~~~~l~~~~~A~~~~~~~~  350 (359)
T 1h2b_A          277 --RMGRLIIVGYGGEL--RFPTIRVISSEVSFEGSLV-GNYVELHELVTLALQGKVRVEV-DIHKLDEINDVLERLEKGE  350 (359)
T ss_dssp             --EEEEEEECCCSSCC--CCCHHHHHHTTCEEEECCS-CCHHHHHHHHHHHHTTSCCCCE-EEEEGGGHHHHHHHHHTTC
T ss_pred             --CCCEEEEEeCCCCC--CCCHHHHHhCCcEEEEecC-CCHHHHHHHHHHHHcCCCcceE-EEEeHHHHHHHHHHHHcCC
Confidence              99999999965432  2334455678888888653 5688999999999999999888 9999999999999999988


Q ss_pred             CcccEEEeC
Q 045248          232 ATGKIIVEP  240 (240)
Q Consensus       232 ~~gkvvl~~  240 (240)
                      ..||+|+++
T Consensus       351 ~~gKvvv~~  359 (359)
T 1h2b_A          351 VLGRAVLIP  359 (359)
T ss_dssp             CSSEEEEEC
T ss_pred             CceEEEeeC
Confidence            889999975

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=1.6e-38  Score=259.32  Aligned_cols=230  Identities=26%  Similarity=0.340  Sum_probs=192.7

Q ss_pred             cceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHH
Q 045248            4 LWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYA   83 (240)
Q Consensus         4 ~~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~   83 (240)
                      ..++.+...+|+|+||++++++.++++|++++++++|+++..+.|||+++.+..++     ++|++|||+|++|++|+++
T Consensus       102 GDrV~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~-----~~g~~VlV~Gasg~iG~~~  176 (342)
T 4eye_A          102 GDRVMAFNFIGGYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQL-----RAGETVLVLGAAGGIGTAA  176 (342)
T ss_dssp             TCEEEEECSSCCSBSEEEECGGGEEECCTTSCHHHHHHHTTHHHHHHHHHHTTSCC-----CTTCEEEESSTTSHHHHHH
T ss_pred             CCEEEEecCCCcceEEEEEcHHHeEECCCCCCHHHHHHhhhHHHHHHHHHHHhcCC-----CCCCEEEEECCCCHHHHHH
Confidence            34556666789999999999999999999999999999999999999999888888     8999999999889999999


Q ss_pred             HHHHHhCCCEEEEEeC-cccHHHHHhcCCCEEEeCCCCc-c-ccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEE
Q 045248           84 VQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPD-G-AALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVID  160 (240)
Q Consensus        84 ~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~-~-~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~  160 (240)
                      +|+|+.+|++|+++++ +++++.++++|++.++++. .+ . ...+.+.+.++|++|||+|++.+..++++++++|+++.
T Consensus       177 ~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~-~~~~~~v~~~~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~  255 (342)
T 4eye_A          177 IQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLE-EGWAKAVREATGGAGVDMVVDPIGGPAFDDAVRTLASEGRLLV  255 (342)
T ss_dssp             HHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESS-TTHHHHHHHHTTTSCEEEEEESCC--CHHHHHHTEEEEEEEEE
T ss_pred             HHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCc-hhHHHHHHHHhCCCCceEEEECCchhHHHHHHHhhcCCCEEEE
Confidence            9999999999999997 5899999999999999887 44 2 23345666799999999999889999999999999999


Q ss_pred             eCCCchHHHHHHHhhheeccceeeeEEEc------C--CHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCC
Q 045248          161 ITPGPSAMLTFALKKLTFSKKQLVPLLLI------P--KRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHA  232 (240)
Q Consensus       161 ~g~~~~~~~~~~~~~~~~~~~~i~~~~~~------~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~  232 (240)
                      +|........++...+..++.++.++...      +  ..+.++++++++++| ++++++++|+++++++||+.+.+++.
T Consensus       256 ~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g-l~~~i~~~~~l~~~~~A~~~~~~~~~  334 (342)
T 4eye_A          256 VGFAAGGIPTIKVNRLLLRNASLIGVAWGEFLRTHADYLYETQAGLEKLVAEG-MRPPVSARIPLSEGRQALQDFADGKV  334 (342)
T ss_dssp             C----------CCCCGGGTTCEEEECCHHHHHHHCTTHHHHHHHHHHHHHHTT-CCCCEEEEEEGGGHHHHHHHHHTTCC
T ss_pred             EEccCCCCCccCHHHHhhcCCEEEEEehhhhhhcCHHHHHHHHHHHHHHHHcC-CCCCcceEEeHHHHHHHHHHHHhCCC
Confidence            99765444445556677888888887531      1  135689999999999 99999999999999999999999999


Q ss_pred             cccEEEeC
Q 045248          233 TGKIIVEP  240 (240)
Q Consensus       233 ~gkvvl~~  240 (240)
                      .||+|++|
T Consensus       335 ~gKvvl~P  342 (342)
T 4eye_A          335 YGKMVLVP  342 (342)
T ss_dssp             CSEEEEEC
T ss_pred             CceEEEeC
Confidence            99999986

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=6.8e-39  Score=261.81  Aligned_cols=233  Identities=25%  Similarity=0.401  Sum_probs=197.5

Q ss_pred             cccceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHH
Q 045248            2 CNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGH   81 (240)
Q Consensus         2 c~~~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~   81 (240)
                      |++....|...+|+|+||++++++.++++|++++++++|+++.++.|||+++.+..++     +++++|||+|++|++|+
T Consensus       107 C~~~~~~G~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~al~~~~~~-----~~g~~vlV~Gasg~iG~  181 (343)
T 2eih_A          107 CPRYQILGEHRHGTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGV-----RPGDDVLVMAAGSGVSV  181 (343)
T ss_dssp             CTTCEETTTSSCCSSBSEEEEEGGGEEECCTTSCHHHHHHSHHHHHHHHHHHTTTSCC-----CTTCEEEECSTTSTTHH
T ss_pred             cccccccCcCCCccceeEEEeChHHeEECCCCCCHHHHhhchhhHHHHHHHHHHhcCC-----CCCCEEEEECCCchHHH
Confidence            5555555666689999999999999999999999999999999999999999666788     89999999998899999


Q ss_pred             HHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCcc-ccc-cCCCCCcccEEEeCCCCCCccccccCCCCCcEE
Q 045248           82 YAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDG-AAL-KSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKV  158 (240)
Q Consensus        82 ~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~-~~~-~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~i  158 (240)
                      +++|+++.+|++|++++++ ++.+.++++|++.++++.+.+. ..+ +.+.+.++|++||++|++.+..++++++++|++
T Consensus       182 ~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~~  261 (343)
T 2eih_A          182 AAIQIAKLFGARVIATAGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGADKVVDHTGALYFEGVIKATANGGRI  261 (343)
T ss_dssp             HHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHHTTTTCEEEEEESSCSSSHHHHHHHEEEEEEE
T ss_pred             HHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCCHHHHHHHHHhhccCCEE
Confidence            9999999999999999974 7889999999999998876552 222 334456899999999977799999999999999


Q ss_pred             EEeCCCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEE
Q 045248          159 IDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIV  238 (240)
Q Consensus       159 v~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl  238 (240)
                      +.+|........++...+..+++++.++. ....+.++++++++++|++++.++++|+|+++++||+.+.+++..||+|+
T Consensus       262 v~~g~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv  340 (343)
T 2eih_A          262 AIAGASSGYEGTLPFAHVFYRQLSILGST-MASKSRLFPILRFVEEGKLKPVVGQVLPLEAAAEGHRLLEERRVFGKVVL  340 (343)
T ss_dssp             EESSCCCSCCCCCCTTHHHHTTCEEEECC-SCCGGGHHHHHHHHHHTSSCCCEEEEEEGGGHHHHHHHHHTTCSSSEEEE
T ss_pred             EEEecCCCCcCccCHHHHHhCCcEEEEec-CccHHHHHHHHHHHHcCCCCCceeEEeeHHHHHHHHHHHHcCCCceEEEE
Confidence            99996543221233344556788888865 35678899999999999999999999999999999999999888899998


Q ss_pred             eC
Q 045248          239 EP  240 (240)
Q Consensus       239 ~~  240 (240)
                      ++
T Consensus       341 ~~  342 (343)
T 2eih_A          341 QV  342 (343)
T ss_dssp             EC
T ss_pred             ec
Confidence            75

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=100.00  E-value=2.8e-38  Score=255.98  Aligned_cols=217  Identities=31%  Similarity=0.402  Sum_probs=190.4

Q ss_pred             CCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhC
Q 045248           11 HNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLG   90 (240)
Q Consensus        11 ~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~   90 (240)
                      ..+|+|+||++++++.++++|++++++++|++++++.|||+++ +.+++     ++|++|||+||+|++|++++|+|+.+
T Consensus       103 ~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~-----~~g~~vlV~Ga~G~vG~~a~q~a~~~  176 (321)
T 3tqh_A          103 DHPCCYAEYVCASPDTIIQKLEKLSFLQAASLPTAGLTALQAL-NQAEV-----KQGDVVLIHAGAGGVGHLAIQLAKQK  176 (321)
T ss_dssp             TCCCCSBSEEEECGGGEEECCTTSCHHHHHHSHHHHHHHHHHH-HHTTC-----CTTCEEEESSTTSHHHHHHHHHHHHT
T ss_pred             CCCCcceEEEEecHHHhccCCCCCCHHHHhhhhhHHHHHHHHH-HhcCC-----CCCCEEEEEcCCcHHHHHHHHHHHHc
Confidence            3479999999999999999999999999999999999999999 88888     89999999999999999999999999


Q ss_pred             CCEEEEEeCcccHHHHHhcCCCEEEeCCCCc-cccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchHHH
Q 045248           91 NTHVTASCGARNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAML  169 (240)
Q Consensus        91 g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~  169 (240)
                      |++|++++++++++.++++|++.++++.+.+ .....    .++|++|||+|++.+..++++++++|+++.+|.......
T Consensus       177 Ga~vi~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~----~g~D~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~  252 (321)
T 3tqh_A          177 GTTVITTASKRNHAFLKALGAEQCINYHEEDFLLAIS----TPVDAVIDLVGGDVGIQSIDCLKETGCIVSVPTITAGRV  252 (321)
T ss_dssp             TCEEEEEECHHHHHHHHHHTCSEEEETTTSCHHHHCC----SCEEEEEESSCHHHHHHHGGGEEEEEEEEECCSTTHHHH
T ss_pred             CCEEEEEeccchHHHHHHcCCCEEEeCCCcchhhhhc----cCCCEEEECCCcHHHHHHHHhccCCCEEEEeCCCCchhh
Confidence            9999999987779999999999999987765 22111    579999999998777899999999999999987544322


Q ss_pred             HHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          170 TFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       170 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                         ...+..++.++.+++.....+.++++++++++|++++.++++|+++++++||+.+.+++..||+|+++
T Consensus       253 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  320 (321)
T 3tqh_A          253 ---IEVAKQKHRRAFGLLKQFNIEELHYLGKLVSEDKLRIEISRIFQLSEAVTAHELLETGHVRGKLVFKV  320 (321)
T ss_dssp             ---HHHHHHTTCEEECCCCCCCHHHHHHHHHHHHTTSSCCCEEEEECGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             ---hhhhhhcceEEEEEecCCCHHHHHHHHHHHHCCCcccccccEEcHHHHHHHHHHHHcCCCCceEEEEe
Confidence               22344667777775445678899999999999999999999999999999999999999999999975

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=100.00  E-value=3.4e-39  Score=272.73  Aligned_cols=233  Identities=21%  Similarity=0.248  Sum_probs=196.9

Q ss_pred             cccceecccCC-CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhh--hCCCcCCCCCCCeEEEEcCCch
Q 045248            2 CNLWRIDVSHN-GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQS--AGVKLDGSGQQKNILVTAASGG   78 (240)
Q Consensus         2 c~~~~~~~~~~-~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~--~~~~~~~~~~g~~vlV~G~~g~   78 (240)
                      |++....|... +|+|+||++++++.++++|+++++++||++++.+.|||+++...  +++     ++|++|||+|++|+
T Consensus       166 c~~~~~~G~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~-----~~g~~VlV~GasG~  240 (456)
T 3krt_A          166 DPEQRIWGFETNFGGLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGM-----KQGDNVLIWGASGG  240 (456)
T ss_dssp             CTTCEETTTTSSSCSSBSEEEEEGGGEEECCTTSCHHHHHSSHHHHHHHHHHHTSTTTTCC-----CTTCEEEETTTTSH
T ss_pred             CccccccccCCCCCcccceEEechHHeeECCCCCCHHHHHHhhhHHHHHHHHHHhhcccCC-----CCCCEEEEECCCCH
Confidence            44555555544 59999999999999999999999999999999999999999654  677     89999999998899


Q ss_pred             HHHHHHHHHHhCCCEEEEEeC-cccHHHHHhcCCCEEEeCCCCcc------------------cc-ccCCCCCcccEEEe
Q 045248           79 VGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPDG------------------AA-LKSPSGRKYDAVIH  138 (240)
Q Consensus        79 vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~------------------~~-~~~~~~~~~d~v~d  138 (240)
                      +|++++|+|+.+|++|+++++ ++++++++++|++.++++.+.+.                  .. .+.+.+.++|+|||
T Consensus       241 vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~t~g~g~Dvvid  320 (456)
T 3krt_A          241 LGSYATQFALAGGANPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFE  320 (456)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHHHHHHHTSCCEEEEEE
T ss_pred             HHHHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCcEEEecCcCcccccccccccchHHHHHHHHHHHHHhCCCCCcEEEE
Confidence            999999999999999888886 48999999999999999876542                  22 23456679999999


Q ss_pred             CCCCCCccccccCCCCCcEEEEeCCCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecch
Q 045248          139 CATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLS  218 (240)
Q Consensus       139 ~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  218 (240)
                      ++|++.+..++++++++|+++.+|........++...+.++++++.+++. ...+.+.++++++++|++++.++++|+|+
T Consensus       321 ~~G~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~l~~~g~l~~~i~~~~~l~  399 (456)
T 3krt_A          321 HPGRETFGASVFVTRKGGTITTCASTSGYMHEYDNRYLWMSLKRIIGSHF-ANYREAWEANRLIAKGRIHPTLSKVYSLE  399 (456)
T ss_dssp             CSCHHHHHHHHHHEEEEEEEEESCCTTCSEEEEEHHHHHHTTCEEEECCS-CCHHHHHHHHHHHHTTSSCCCEEEEEEGG
T ss_pred             cCCchhHHHHHHHhhCCcEEEEEecCCCcccccCHHHHHhcCeEEEEecc-CCHHHHHHHHHHHHcCCcccceeEEEcHH
Confidence            99997799999999999999999965432223344456677778888764 56777889999999999999999999999


Q ss_pred             hHHHHHHHHHcCCCcccEEEeC
Q 045248          219 KAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       219 ~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      ++++||+.+.+++..||+|+.+
T Consensus       400 ~~~eA~~~l~~~~~~GKvvv~~  421 (456)
T 3krt_A          400 DTGQAAYDVHRNLHQGKVGVLC  421 (456)
T ss_dssp             GHHHHHHHHHTTCSSSEEEEES
T ss_pred             HHHHHHHHHHhCCCCCcEEEEe
Confidence            9999999999999999998863

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=100.00  E-value=4.5e-39  Score=263.71  Aligned_cols=231  Identities=21%  Similarity=0.311  Sum_probs=197.2

Q ss_pred             cceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHH
Q 045248            4 LWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYA   83 (240)
Q Consensus         4 ~~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~   83 (240)
                      ..++.+...+|+|+||++++++.++++|++++++++|+++.++.|||+++.+.+++     ++|++|||+||+|++|+++
T Consensus       110 GdrV~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~-----~~g~~VlV~Gg~g~iG~~~  184 (353)
T 4dup_A          110 GDKVCGLANGGAYAEYCLLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQMAGL-----TEGESVLIHGGTSGIGTTA  184 (353)
T ss_dssp             TCEEEEECSSCCSBSEEEEEGGGEEECCTTCCHHHHHTSHHHHHHHHHHHTTTTCC-----CTTCEEEESSTTSHHHHHH
T ss_pred             CCEEEEecCCCceeeEEEEcHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCC-----CCCCEEEEEcCCCHHHHHH
Confidence            45556666789999999999999999999999999999999999999999888888     8999999998899999999


Q ss_pred             HHHHHhCCCEEEEEeC-cccHHHHHhcCCCEEEeCCCCc-cccc-cCCCCCcccEEEeCCCCCCccccccCCCCCcEEEE
Q 045248           84 VQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPD-GAAL-KSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVID  160 (240)
Q Consensus        84 ~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~-~~~~-~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~  160 (240)
                      +|+++..|++|+++++ +++++.++++|++.++++.+.+ ...+ +.+ +.++|++|||+|++.+..++++++++|+++.
T Consensus       185 ~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~-~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~  263 (353)
T 4dup_A          185 IQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAET-GQGVDIILDMIGAAYFERNIASLAKDGCLSI  263 (353)
T ss_dssp             HHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHH-SSCEEEEEESCCGGGHHHHHHTEEEEEEEEE
T ss_pred             HHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHh-CCCceEEEECCCHHHHHHHHHHhccCCEEEE
Confidence            9999999999999996 4889999999999999988766 2233 334 7799999999999889999999999999999


Q ss_pred             eCCCchHHHH-HHHhhheeccceeeeEEEcCCH---------HHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcC
Q 045248          161 ITPGPSAMLT-FALKKLTFSKKQLVPLLLIPKR---------ENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDG  230 (240)
Q Consensus       161 ~g~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~---------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~  230 (240)
                      +|........ ++...+..++.++.+++.....         +.++++++++++|++++.++++|+++++++||+.+.++
T Consensus       264 ~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~l~~~  343 (353)
T 4dup_A          264 IAFLGGAVAEKVNLSPIMVKRLTVTGSTMRPRTAEEKRAIRDDLLSEVWPLLEAGTVAPVIHKVFAFEDVADAHRLLEEG  343 (353)
T ss_dssp             CCCTTCSEEEEEECHHHHHTTCEEEECCSTTSCHHHHHHHHHHHHHHTHHHHHHTSSCCCEEEEEEGGGHHHHHHHHHHT
T ss_pred             EEecCCCcccCCCHHHHHhcCceEEEEeccccchhhhHHHHHHHHHHHHHHHHCCCccCCcceEEeHHHHHHHHHHHHhC
Confidence            9965432221 3344556778888887642221         12788999999999999999999999999999999999


Q ss_pred             CCcccEEEeC
Q 045248          231 HATGKIIVEP  240 (240)
Q Consensus       231 ~~~gkvvl~~  240 (240)
                      +..||+|+++
T Consensus       344 ~~~gKvvl~~  353 (353)
T 4dup_A          344 SHVGKVMLTV  353 (353)
T ss_dssp             CCSSEEEEEC
T ss_pred             CCCceEEEeC
Confidence            9999999975

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=2.1e-38  Score=258.65  Aligned_cols=229  Identities=19%  Similarity=0.289  Sum_probs=196.3

Q ss_pred             CcccceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHH
Q 045248            1 MCNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVG   80 (240)
Q Consensus         1 ~c~~~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG   80 (240)
                      +|.+....+...+|+|+||++++++.++++|++++++++|++++++.|||+++ +..++     ++|++|||+| +|++|
T Consensus       107 ~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l-~~~~~-----~~g~~VlV~G-aG~vG  179 (340)
T 3s2e_A          107 LCEKQQNTGYSVNGGYGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTVYKGL-KVTDT-----RPGQWVVISG-IGGLG  179 (340)
T ss_dssp             GCTTCEEBTTTBCCSSBSEEEECTTTSEECCTTSCHHHHGGGGTHHHHHHHHH-HTTTC-----CTTSEEEEEC-CSTTH
T ss_pred             cCccccccCCCCCCcceeEEEechHHEEECCCCCCHHHhhcccchhHHHHHHH-HHcCC-----CCCCEEEEEC-CCHHH
Confidence            36666667777899999999999999999999999999999999999999999 67788     8999999999 59999


Q ss_pred             HHHHHHHHhCCCEEEEEeC-cccHHHHHhcCCCEEEeCCCCc-cccccCCCCCcccEEEeCCCC-CCccccccCCCCCcE
Q 045248           81 HYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGK  157 (240)
Q Consensus        81 ~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~  157 (240)
                      ++++|+|+.+|++|+++++ +++++.++++|++.++++.+.+ ...+..+.+ ++|++||++|+ ..+..++++++++|+
T Consensus       180 ~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~G~  258 (340)
T 3s2e_A          180 HVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIG-GAHGVLVTAVSPKAFSQAIGMVRRGGT  258 (340)
T ss_dssp             HHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHS-SEEEEEESSCCHHHHHHHHHHEEEEEE
T ss_pred             HHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCC-CCCEEEEeCCCHHHHHHHHHHhccCCE
Confidence            9999999999999999986 4899999999999999988766 233333444 89999999986 458899999999999


Q ss_pred             EEEeCCCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEE
Q 045248          158 VIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKII  237 (240)
Q Consensus       158 iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvv  237 (240)
                      ++.+|..... ...+...+..+++++.+++. ...++++++++++++|++++.+ ++++++++++||+.+.+++..||+|
T Consensus       259 iv~~G~~~~~-~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~l~~~g~l~~~~-~~~~l~~~~~A~~~~~~~~~~Gkvv  335 (340)
T 3s2e_A          259 IALNGLPPGD-FGTPIFDVVLKGITIRGSIV-GTRSDLQESLDFAAHGDVKATV-STAKLDDVNDVFGRLREGKVEGRVV  335 (340)
T ss_dssp             EEECSCCSSE-EEEEHHHHHHTTCEEEECCS-CCHHHHHHHHHHHHTTSCCCCE-EEECGGGHHHHHHHHHTTCCCSEEE
T ss_pred             EEEeCCCCCC-CCCCHHHHHhCCeEEEEEec-CCHHHHHHHHHHHHhCCCCceE-EEEeHHHHHHHHHHHHcCCCceEEE
Confidence            9999965432 22334455678888888763 6788999999999999999764 5789999999999999999999999


Q ss_pred             EeC
Q 045248          238 VEP  240 (240)
Q Consensus       238 l~~  240 (240)
                      +++
T Consensus       336 v~~  338 (340)
T 3s2e_A          336 LDF  338 (340)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            975

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=100.00  E-value=1e-37  Score=255.28  Aligned_cols=232  Identities=17%  Similarity=0.204  Sum_probs=193.1

Q ss_pred             CcccceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHH
Q 045248            1 MCNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVG   80 (240)
Q Consensus         1 ~c~~~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG   80 (240)
                      +|.++.+.+...+|+|+||++++++.++++|++++++++|+++.. .++++++ ...++     ++|++|||+| +|++|
T Consensus       102 ~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~-~~~~~~~-~~~~~-----~~g~~VlV~G-aG~vG  173 (346)
T 4a2c_A          102 QCAKYDFIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIEPI-TVGLHAF-HLAQG-----CENKNVIIIG-AGTIG  173 (346)
T ss_dssp             GCSSCEEBTTTBCCSSBSEEEEEGGGEEECCTTSCGGGGGGHHHH-HHHHHHH-HHTTC-----CTTSEEEEEC-CSHHH
T ss_pred             cCCCcccccCCCCcccccccccchheEEECCCCCCHHHHHhchHH-HHHHHHH-HHhcc-----CCCCEEEEEC-CCCcc
Confidence            477778888889999999999999999999999999999987533 3555555 77787     8999999999 69999


Q ss_pred             HHHHHHHHhCCC-EEEEEeC-cccHHHHHhcCCCEEEeCCCCcc-c-cccCCCCCcccEEEeCCCCC-CccccccCCCCC
Q 045248           81 HYAVQLAKLGNT-HVTASCG-ARNIEFVKSLGADEVLDYKTPDG-A-ALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTN  155 (240)
Q Consensus        81 ~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~-~-~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~  155 (240)
                      ++++|+|+++|+ .++++++ ++|++.++++|+++++++++.+. . ....+.+.++|+++|++|.+ .++.++++++++
T Consensus       174 ~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d~v~d~~G~~~~~~~~~~~l~~~  253 (346)
T 4a2c_A          174 LLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQLILETAGVPQTVELAVEIAGPH  253 (346)
T ss_dssp             HHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSEEEEECSCSHHHHHHHHHHCCTT
T ss_pred             hHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCcccccccccccchhhhhhheecCC
Confidence            999999999999 5566665 48899999999999999988763 2 23445678899999999974 588999999999


Q ss_pred             cEEEEeCCCchH--HHHHHHhhheeccceeeeEEEc----CCHHHHHHHHHHHHCCceE--EecCceecchhHHHHHHHH
Q 045248          156 GKVIDITPGPSA--MLTFALKKLTFSKKQLVPLLLI----PKRENLDFLVKLVKEGKLK--TVINSKHPLSKAEDAWAES  227 (240)
Q Consensus       156 G~iv~~g~~~~~--~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~a~~~~  227 (240)
                      |+++.+|.....  ....+...+..+++++.|++..    ...++++++++++++|+++  ++++++|+|+++++||+.+
T Consensus       254 G~~v~~g~~~~~~~~~~~~~~~~~~k~~~i~G~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~lI~~~~~l~~~~~A~~~l  333 (346)
T 4a2c_A          254 AQLALVGTLHQDLHLTSATFGKILRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDI  333 (346)
T ss_dssp             CEEEECCCCSSCEEECHHHHHHHHHHTCEEEECCTTCCSSTTCHHHHHHHHHHHTTCSCCGGGEEEEECHHHHHHHHHHH
T ss_pred             eEEEEEeccCCCccccccCHHHHhhceeEEEEEeccccCcchHHHHHHHHHHHHcCCCCCCccEeEEEeHHHHHHHHHHH
Confidence            999999965432  2344556667788888887542    2356899999999999875  5788999999999999999


Q ss_pred             HcCCCcccEEEeC
Q 045248          228 IDGHATGKIIVEP  240 (240)
Q Consensus       228 ~~~~~~gkvvl~~  240 (240)
                      .+++..||+|+.|
T Consensus       334 ~~~~~~GKvVl~P  346 (346)
T 4a2c_A          334 ARNAMPGKVLLIP  346 (346)
T ss_dssp             TTSCCCSEEEECC
T ss_pred             HcCCCceEEEEEC
Confidence            9999999999976

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=1.8e-37  Score=254.91  Aligned_cols=218  Identities=20%  Similarity=0.307  Sum_probs=188.0

Q ss_pred             ccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHH
Q 045248            9 VSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAK   88 (240)
Q Consensus         9 ~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~   88 (240)
                      +...+|+|+||++++++.++++|++++++++|++++.+.|||+++.+ +++     ++|++|||+|+ |++|++++|+|+
T Consensus       128 g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~-~~~-----~~g~~VlV~Ga-G~vG~~~~qlak  200 (360)
T 1piw_A          128 GYVSQGGYANYVRVHEHFVVPIPENIPSHLAAPLLCGGLTVYSPLVR-NGC-----GPGKKVGIVGL-GGIGSMGTLISK  200 (360)
T ss_dssp             SCBCCCSSBSEEEEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHH-TTC-----STTCEEEEECC-SHHHHHHHHHHH
T ss_pred             CccCCCcceeEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHH-cCC-----CCCCEEEEECC-CHHHHHHHHHHH
Confidence            33467999999999999999999999999999999999999999954 788     89999999996 999999999999


Q ss_pred             hCCCEEEEEeC-cccHHHHHhcCCCEEEeCCCC-cc-ccccCCCCCcccEEEeCCCC---CCccccccCCCCCcEEEEeC
Q 045248           89 LGNTHVTASCG-ARNIEFVKSLGADEVLDYKTP-DG-AALKSPSGRKYDAVIHCATG---IPWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus        89 ~~g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~-~~-~~~~~~~~~~~d~v~d~~g~---~~~~~~~~~l~~~G~iv~~g  162 (240)
                      .+|++|+++++ +++++.++++|++.++++.+. +. ..+.    .++|++||++|.   ..+..++++++++|+++.+|
T Consensus       201 ~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~----~~~D~vid~~g~~~~~~~~~~~~~l~~~G~iv~~g  276 (360)
T 1piw_A          201 AMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYF----DTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSIS  276 (360)
T ss_dssp             HHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSC----SCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECC
T ss_pred             HCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhh----cCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEec
Confidence            99999999995 589999999999999988765 42 2222    489999999998   56889999999999999999


Q ss_pred             CCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchh--HHHHHHHHHcCCCcccEEEeC
Q 045248          163 PGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSK--AEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      .... ...++...+..+++++.+++. ...+.++++++++++|++++.+ ++|++++  +++||+.+.+++..||+|+++
T Consensus       277 ~~~~-~~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~l~~~g~l~~~i-~~~~l~~~~~~~A~~~~~~~~~~gKvvi~~  353 (360)
T 1piw_A          277 IPEQ-HEMLSLKPYGLKAVSISYSAL-GSIKELNQLLKLVSEKDIKIWV-ETLPVGEAGVHEAFERMEKGDVRYRFTLVG  353 (360)
T ss_dssp             CCCS-SCCEEECGGGCBSCEEEECCC-CCHHHHHHHHHHHHHTTCCCCE-EEEESSHHHHHHHHHHHHHTCCSSEEEEEC
T ss_pred             CCCC-ccccCHHHHHhCCeEEEEEec-CCHHHHHHHHHHHHhCCCcceE-EEEeccHhHHHHHHHHHHCCCCceEEEEec
Confidence            7543 112334456678888888653 5678899999999999999887 8999999  999999999988889999874

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=100.00  E-value=1.7e-38  Score=267.95  Aligned_cols=233  Identities=24%  Similarity=0.279  Sum_probs=194.3

Q ss_pred             cccceecccCC-CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhh--hCCCcCCCCCCCeEEEEcCCch
Q 045248            2 CNLWRIDVSHN-GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQS--AGVKLDGSGQQKNILVTAASGG   78 (240)
Q Consensus         2 c~~~~~~~~~~-~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~--~~~~~~~~~~g~~vlV~G~~g~   78 (240)
                      |.+....|... +|+|+||++++++.++++|++++++++|++++.+.|||+++...  +++     ++|++|||+|++|+
T Consensus       158 c~~~~~~G~~~~~G~~aey~~v~~~~~~~iP~~ls~~~aA~l~~~~~tA~~al~~~~~~~~-----~~g~~VlV~GasG~  232 (447)
T 4a0s_A          158 GTEQRAWGFETNFGGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQM-----KQGDIVLIWGASGG  232 (447)
T ss_dssp             STTCEETTTTSSSCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTSTTTTCC-----CTTCEEEETTTTSH
T ss_pred             ccccccccccCCCCceeeeeecCHHHcEECCCCCCHHHHHHhHHHHHHHHHHHHhhhccCC-----CCCCEEEEECCCCH
Confidence            55555555544 59999999999999999999999999999999999999999643  777     89999999998899


Q ss_pred             HHHHHHHHHHhCCCEEEEEeC-cccHHHHHhcCCCEEEeCCCCc-------------------cccccCCCCCcccEEEe
Q 045248           79 VGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPD-------------------GAALKSPSGRKYDAVIH  138 (240)
Q Consensus        79 vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~-------------------~~~~~~~~~~~~d~v~d  138 (240)
                      +|++++|+|+..|++|+++++ +++++.++++|++.++++.+.+                   ...+....+.++|++||
T Consensus       233 iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~g~Dvvid  312 (447)
T 4a0s_A          233 LGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFE  312 (447)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHHHHHHHSSCCSEEEE
T ss_pred             HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHHHHHHHHhCCCceEEEE
Confidence            999999999999999888886 4889999999999998865432                   11222222678999999


Q ss_pred             CCCCCCccccccCCCCCcEEEEeCCCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecch
Q 045248          139 CATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLS  218 (240)
Q Consensus       139 ~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  218 (240)
                      ++|.+.+..++++++++|+++.+|........++...+..++.++.+++. ...+.+.++++++++|++++.++++|+++
T Consensus       313 ~~G~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~l~~~g~l~~~i~~~~~l~  391 (447)
T 4a0s_A          313 HTGRVTFGLSVIVARRGGTVVTCGSSSGYLHTFDNRYLWMKLKKIVGSHG-ANHEEQQATNRLFESGAVVPAMSAVYPLA  391 (447)
T ss_dssp             CSCHHHHHHHHHHSCTTCEEEESCCTTCSEEEEEHHHHHHTTCEEEECCS-CCHHHHHHHHHHHHTTSSCCCEEEEEEGG
T ss_pred             CCCchHHHHHHHHHhcCCEEEEEecCCCcccccCHHHHHhCCCEEEecCC-CCHHHHHHHHHHHHcCCcccceeEEEcHH
Confidence            99997788999999999999999965432222334455667778888763 56778899999999999999999999999


Q ss_pred             hHHHHHHHHHcCCCcccEEEeC
Q 045248          219 KAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       219 ~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      ++++||+.+.+++..||+|+.+
T Consensus       392 ~~~~A~~~~~~~~~~GKvvv~~  413 (447)
T 4a0s_A          392 EAAEACRVVQTSRQVGKVAVLC  413 (447)
T ss_dssp             GHHHHHHHHHTTCCSSEEEEES
T ss_pred             HHHHHHHHHhcCCCceEEEEEe
Confidence            9999999999999999998863

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.8e-37  Score=253.89  Aligned_cols=230  Identities=23%  Similarity=0.224  Sum_probs=184.3

Q ss_pred             cceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHH
Q 045248            4 LWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYA   83 (240)
Q Consensus         4 ~~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~   83 (240)
                      ..++.+...+|+|+||++++++.++++|++++++++|++++++.|||+++.+.+++     ++|++|||+|++|++|+++
T Consensus        85 GdrV~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~-----~~g~~VlV~Ga~G~vG~~a  159 (349)
T 4a27_A           85 GDRVMAFVNYNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANL-----REGMSVLVHSAGGGVGQAV  159 (349)
T ss_dssp             TCEEEEECSSCCSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCC-----CTTCEEEESSTTSHHHHHH
T ss_pred             CCEEEEecCCCcceEEEEecHHHeEECCCCCCHHHHHHHHHHHHHHHHHHHHhcCC-----CCCCEEEEEcCCcHHHHHH
Confidence            34555666789999999999999999999999999999999999999999888888     8999999999889999999


Q ss_pred             HHHHHhCC-CEEEEEeCcccHHHHHhcCCCEEEeCCCCc-cccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEe
Q 045248           84 VQLAKLGN-THVTASCGARNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDI  161 (240)
Q Consensus        84 ~~~a~~~g-~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~  161 (240)
                      +|+|+.+| ++|++++++++.+.++ +|++++++ .+.+ ...+....++++|++|||+|++.+..++++++++|+++.+
T Consensus       160 ~qla~~~g~~~V~~~~~~~~~~~~~-~ga~~~~~-~~~~~~~~~~~~~~~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~  237 (349)
T 4a27_A          160 AQLCSTVPNVTVFGTASTFKHEAIK-DSVTHLFD-RNADYVQEVKRISAEGVDIVLDCLCGDNTGKGLSLLKPLGTYILY  237 (349)
T ss_dssp             HHHHTTSTTCEEEEEECGGGHHHHG-GGSSEEEE-TTSCHHHHHHHHCTTCEEEEEEECC-------CTTEEEEEEEEEE
T ss_pred             HHHHHHcCCcEEEEeCCHHHHHHHH-cCCcEEEc-CCccHHHHHHHhcCCCceEEEECCCchhHHHHHHHhhcCCEEEEE
Confidence            99999996 5999998778888888 99999998 5544 3333333467999999999998889999999999999999


Q ss_pred             CCCchHH----------------HHHHHhhheeccceeeeEEEc-----CC-----HHHHHHHHHHHHCCceEEecCcee
Q 045248          162 TPGPSAM----------------LTFALKKLTFSKKQLVPLLLI-----PK-----RENLDFLVKLVKEGKLKTVINSKH  215 (240)
Q Consensus       162 g~~~~~~----------------~~~~~~~~~~~~~~i~~~~~~-----~~-----~~~~~~~~~~~~~~~i~~~~~~~~  215 (240)
                      |......                ...+...+..++.++.++...     ..     .+.++++++++++|++++.++++|
T Consensus       238 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~  317 (349)
T 4a27_A          238 GSSNMVTGETKSFFSFAKSWWQVEKVNPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKKIKPVVDSLW  317 (349)
T ss_dssp             C-------------------------CHHHHHHHTCEEEEECHHHHHHTSCCHHHHHHHHHHHHHHHHTTSCCCCEEEEE
T ss_pred             CCCcccccccccccccccccccccccCHHHHhhcCceEEEEeehheeccccchHHHHHHHHHHHHHHHCCCccccccceE
Confidence            8642110                112334455667777776531     11     678999999999999999999999


Q ss_pred             cchhHHHHHHHHHcCCCcccEEEeC
Q 045248          216 PLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       216 ~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      +++++++||+.+.+++..||+|+++
T Consensus       318 ~l~~~~~A~~~l~~~~~~GKvvi~~  342 (349)
T 4a27_A          318 ALEEVKEAMQRIHDRGNIGKLILDV  342 (349)
T ss_dssp             CGGGHHHHHHHHHTTCCSSEEEEET
T ss_pred             CHHHHHHHHHHHHhCCCCceEEEec
Confidence            9999999999999999999999975

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=6.1e-37  Score=250.72  Aligned_cols=211  Identities=16%  Similarity=0.192  Sum_probs=182.6

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      +|+|+||++++++.++++|+++++++||++++++.|||+++ ...++     ++|++|||+| +|++|++++|+|+.+|+
T Consensus       129 ~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l-~~~~~-----~~g~~VlV~G-aG~vG~~a~qla~~~Ga  201 (348)
T 3two_A          129 MGGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGITTYSPL-KFSKV-----TKGTKVGVAG-FGGLGSMAVKYAVAMGA  201 (348)
T ss_dssp             CCSSBSEEEEEGGGCEECCTTSCHHHHGGGGTHHHHHHHHH-HHTTC-----CTTCEEEEES-CSHHHHHHHHHHHHTTC
T ss_pred             CccccceEEechhhEEECCCCCCHHHhhhhhhhHHHHHHHH-HhcCC-----CCCCEEEEEC-CcHHHHHHHHHHHHCCC
Confidence            39999999999999999999999999999999999999999 55678     8999999999 59999999999999999


Q ss_pred             EEEEEeC-cccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC-CccccccCCCCCcEEEEeCCCchHHHH
Q 045248           93 HVTASCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTNGKVIDITPGPSAMLT  170 (240)
Q Consensus        93 ~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~g~~~~~~~~  170 (240)
                      +|+++++ +++++.++++|++.++ . +.  ..+.    .++|++||++|++ .+..++++++++|+++.+|........
T Consensus       202 ~Vi~~~~~~~~~~~~~~lGa~~v~-~-~~--~~~~----~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~  273 (348)
T 3two_A          202 EVSVFARNEHKKQDALSMGVKHFY-T-DP--KQCK----EELDFIISTIPTHYDLKDYLKLLTYNGDLALVGLPPVEVAP  273 (348)
T ss_dssp             EEEEECSSSTTHHHHHHTTCSEEE-S-SG--GGCC----SCEEEEEECCCSCCCHHHHHTTEEEEEEEEECCCCCGGGCC
T ss_pred             eEEEEeCCHHHHHHHHhcCCCeec-C-CH--HHHh----cCCCEEEECCCcHHHHHHHHHHHhcCCEEEEECCCCCCCcc
Confidence            9999985 5899999999999988 2 22  1222    1899999999987 799999999999999999976522222


Q ss_pred             -HHHhhhe-eccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          171 -FALKKLT-FSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       171 -~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                       ++...+. .+++++.+++. ...++++++++++++|++++.+ ++|+++++++||+.+.+++..||+|+++
T Consensus       274 ~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~l~~~g~l~~~~-~~~~l~~~~~A~~~~~~~~~~gKvVi~~  343 (348)
T 3two_A          274 VLSVFDFIHLGNRKVYGSLI-GGIKETQEMVDFSIKHNIYPEI-DLILGKDIDTAYHNLTHGKAKFRYVIDM  343 (348)
T ss_dssp             EEEHHHHHHTCSCEEEECCS-CCHHHHHHHHHHHHHTTCCCCE-EEECGGGHHHHHHHHHTTCCCSEEEEEG
T ss_pred             cCCHHHHHhhCCeEEEEEec-CCHHHHHHHHHHHHhCCCCceE-EEEEHHHHHHHHHHHHcCCCceEEEEec
Confidence             3334455 78889988764 6788999999999999999865 7999999999999999999899999874

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=100.00  E-value=1.7e-37  Score=254.06  Aligned_cols=229  Identities=22%  Similarity=0.343  Sum_probs=197.2

Q ss_pred             cccceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHH
Q 045248            2 CNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGH   81 (240)
Q Consensus         2 c~~~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~   81 (240)
                      |......+...+|+|+||+.++++.++++|+++++++++++++++.|+|+++ +..++     ++|++|||+| +|++|.
T Consensus       105 ~~~~~~~~~~~~G~~ae~~~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l-~~~~~-----~~g~~VlV~G-aG~~g~  177 (348)
T 4eez_A          105 CREVKNAGYSVDGGMAEEAIVVADYAVKVPDGLDPIEASSITCAGVTTYKAI-KVSGV-----KPGDWQVIFG-AGGLGN  177 (348)
T ss_dssp             CTTCEEBTTTBCCSSBSEEEEEGGGSCBCCTTSCHHHHHHHHHHHHHHHHHH-HHHTC-----CTTCEEEEEC-CSHHHH
T ss_pred             cccccccccccCCcceeeccccccceeecCCCCCHHHHhhcccceeeEEeee-cccCC-----CCCCEEEEEc-CCCccH
Confidence            4555666777899999999999999999999999999999999999999999 67778     8999999999 799999


Q ss_pred             HHHHHHHhC-CCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCc--cccccCCCCCcccEEEeCCCCC-CccccccCCCCCc
Q 045248           82 YAVQLAKLG-NTHVTASCGA-RNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTNG  156 (240)
Q Consensus        82 ~~~~~a~~~-g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G  156 (240)
                      +++|+++.. |++|++++++ +|++.++++|++.++|+++.+  ....+.+++.++|.++|++++. .+..++++++++|
T Consensus       178 ~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d~~~~~~~~~~~~~~~~~~l~~~G  257 (348)
T 4eez_A          178 LAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGLGVQSAIVCAVARIAFEQAVASLKPMG  257 (348)
T ss_dssp             HHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSSCEEEEEECCSCHHHHHHHHHTEEEEE
T ss_pred             HHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCCCceEEEEeccCcchhheeheeecCCc
Confidence            999999866 5699999965 789999999999999998877  3344667888999999999874 4889999999999


Q ss_pred             EEEEeCCCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccE
Q 045248          157 KVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKI  236 (240)
Q Consensus       157 ~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkv  236 (240)
                      +++.+|..... ..++...+.++++++.+++. .++++++++++++++|++++.+ ++|+|+++++||+.+.+++..||+
T Consensus       258 ~~v~~g~~~~~-~~~~~~~~~~~~~~i~gs~~-~~~~~~~~~~~l~~~g~i~p~~-~~~~l~~~~~A~~~l~~g~~~GKv  334 (348)
T 4eez_A          258 KMVAVAVPNTE-MTLSVPTVVFDGVEVAGSLV-GTRLDLAEAFQFGAEGKVKPIV-ATRKLEEINDIIDEMKAGKIEGRM  334 (348)
T ss_dssp             EEEECCCCSCE-EEECHHHHHHSCCEEEECCS-CCHHHHHHHHHHHHTTSCCCCE-EEECGGGHHHHHHHHHTTCCSSEE
T ss_pred             eEEEEeccCCC-CccCHHHHHhCCeEEEEEec-CCHHHHHHHHHHHHcCCCEEEE-EEEeHHHHHHHHHHHHCCCCccEE
Confidence            99999965432 22344556778889998764 6788999999999999999755 689999999999999999999999


Q ss_pred             EEeC
Q 045248          237 IVEP  240 (240)
Q Consensus       237 vl~~  240 (240)
                      ||++
T Consensus       335 Vl~~  338 (348)
T 4eez_A          335 VIDF  338 (348)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            9975

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=100.00  E-value=1.7e-37  Score=251.71  Aligned_cols=224  Identities=26%  Similarity=0.286  Sum_probs=186.3

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g   91 (240)
                      .+|+|+||++++++.++++|++++++++|++++.+.|+|+++.+.+++     ++|++|||+|++|++|++++|+++..|
T Consensus        91 ~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~-----~~g~~VlV~Ga~g~iG~~~~~~a~~~G  165 (325)
T 3jyn_A           91 PLGAYSEVHVLPEANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQV-----KPGEIILFHAAAGGVGSLACQWAKALG  165 (325)
T ss_dssp             SSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCC-----CTTCEEEESSTTSHHHHHHHHHHHHHT
T ss_pred             CCccccceEEecHHHeEECCCCCCHHHHhhhhhhHHHHHHHHHHhcCC-----CCCCEEEEEcCCcHHHHHHHHHHHHCC
Confidence            589999999999999999999999999999999999999999888888     899999999999999999999999999


Q ss_pred             CEEEEEeCc-ccHHHHHhcCCCEEEeCCCCcc--ccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchHH
Q 045248           92 THVTASCGA-RNIEFVKSLGADEVLDYKTPDG--AALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAM  168 (240)
Q Consensus        92 ~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~--~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~  168 (240)
                      ++|++++++ ++++.++++|++.++++.+.+.  ...+.+.+.++|++||++|++.+..++++++++|+++.+|......
T Consensus       166 a~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~  245 (325)
T 3jyn_A          166 AKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGVGQDTWLTSLDSVAPRGLVVSFGNASGPV  245 (325)
T ss_dssp             CEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEESSCGGGHHHHHTTEEEEEEEEECCCTTCCC
T ss_pred             CEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCceEEEECCChHHHHHHHHHhcCCCEEEEEecCCCCC
Confidence            999999964 8899999999999999887662  2345566779999999999988999999999999999999654321


Q ss_pred             HHHHHhhheec-cceeeeEEE---cCC----HHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          169 LTFALKKLTFS-KKQLVPLLL---IPK----RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       169 ~~~~~~~~~~~-~~~i~~~~~---~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      ..++...+..+ +..+.+...   ...    .+.++++++++++|++++.++++|+++++++||+.+.+++..||+|+.|
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~Gkvvl~p  325 (325)
T 3jyn_A          246 SGVNLGILAQKDSVYVTRPTLGSYANNAQNLQTMADELFDMLASGKLKVDGIEQYALKDAAKAQIELSARRTTGSTILIP  325 (325)
T ss_dssp             CSCCTHHHHHTTSCEEECCCHHHHSCSTTHHHHHHHHHHHHHHTTSSCCCCCEEEEGGGHHHHHHHHHTTCCCSCEEEEC
T ss_pred             CCCCHHHHhhcCcEEEEeeeeeeecCCHHHHHHHHHHHHHHHHCCCeeCccccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            11222222222 223322111   122    2345689999999999998999999999999999999999999999976

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=100.00  E-value=6.1e-36  Score=247.06  Aligned_cols=222  Identities=29%  Similarity=0.465  Sum_probs=183.1

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhC----CCcCCCCCCCeEEEEcCCchHHHHHHHHH
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAG----VKLDGSGQQKNILVTAASGGVGHYAVQLA   87 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~----~~~~~~~~g~~vlV~G~~g~vG~~~~~~a   87 (240)
                      .+|+|+||++++++.++++|+++++++||++++++.|||+++.+.++    +     ++|++|||+||+|++|++++|+|
T Consensus       130 ~~G~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA~~al~~~~~~~~~~-----~~g~~VlV~Ga~G~vG~~~~qla  204 (375)
T 2vn8_A          130 KQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKN-----CTGKRVLILGASGGVGTFAIQVM  204 (375)
T ss_dssp             SCCSSBSEEEEEGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTT-----CTTCEEEEETTTSHHHHHHHHHH
T ss_pred             CCccceeEEEEcHHHeeeCCCCCCHHHHhhhHHHHHHHHHHHHHhccccccc-----CCCCEEEEECCCCHHHHHHHHHH
Confidence            37999999999999999999999999999999999999999977777    7     89999999999999999999999


Q ss_pred             HhCCCEEEEEeCcccHHHHHhcCCCEEEeCCCCcc-ccccCCCCCcccEEEeCCCCCC--ccccccCCCCCcEEEEeCCC
Q 045248           88 KLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDG-AALKSPSGRKYDAVIHCATGIP--WSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus        88 ~~~g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~-~~~~~~~~~~~d~v~d~~g~~~--~~~~~~~l~~~G~iv~~g~~  164 (240)
                      +.+|++|++++++++++.++++|++.++++.+.+. ..+..  ..++|++||++|++.  +..++++++++|+++.+|..
T Consensus       205 ~~~Ga~Vi~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~--~~g~D~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~  282 (375)
T 2vn8_A          205 KAWDAHVTAVCSQDASELVRKLGADDVIDYKSGSVEEQLKS--LKPFDFILDNVGGSTETWAPDFLKKWSGATYVTLVTP  282 (375)
T ss_dssp             HHTTCEEEEEECGGGHHHHHHTTCSEEEETTSSCHHHHHHT--SCCBSEEEESSCTTHHHHGGGGBCSSSCCEEEESCCS
T ss_pred             HhCCCEEEEEeChHHHHHHHHcCCCEEEECCchHHHHHHhh--cCCCCEEEECCCChhhhhHHHHHhhcCCcEEEEeCCC
Confidence            99999999998778899999999999999876552 22322  257999999999873  58999999999999999975


Q ss_pred             chHHHH-----H---------HHhhh-ee-ccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHH
Q 045248          165 PSAMLT-----F---------ALKKL-TF-SKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESI  228 (240)
Q Consensus       165 ~~~~~~-----~---------~~~~~-~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~  228 (240)
                      ......     .         ..+.+ .+ ++..+...+..+..+.++++++++++|++++.++++|+++++++||+.+.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~  362 (375)
T 2vn8_A          283 FLLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRWAFFMASGPCLDDIAELVDAGKIRPVIEQTFPFSKVPEAFLKVE  362 (375)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHTTSCCCCEEEEEEGGGHHHHHHHHH
T ss_pred             cccccccccccchhheeehhhccccccccccCcceEEEEeCCCHHHHHHHHHHHHCCCcccCcCeEECHHHHHHHHHHHH
Confidence            432111     0         01111 11 33333322223456789999999999999999999999999999999999


Q ss_pred             cCCCcccEEEeC
Q 045248          229 DGHATGKIIVEP  240 (240)
Q Consensus       229 ~~~~~gkvvl~~  240 (240)
                      +++..||+|+++
T Consensus       363 ~~~~~gKvvi~~  374 (375)
T 2vn8_A          363 RGHARGKTVINV  374 (375)
T ss_dssp             HCCCSSEEEEEC
T ss_pred             cCCCCCeEEEEe
Confidence            988889999875

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=100.00  E-value=2.3e-37  Score=250.00  Aligned_cols=213  Identities=19%  Similarity=0.268  Sum_probs=172.3

Q ss_pred             CCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhC
Q 045248           11 HNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLG   90 (240)
Q Consensus        11 ~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~   90 (240)
                      ..+|+|+||++++++.++++|++++++++|+++.++.|||+++ +.+++     ++|++|||+|+ |++|++++|+|+.+
T Consensus        93 ~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~-----~~g~~VlV~Ga-G~vG~~a~qlak~~  165 (315)
T 3goh_A           93 KRHGSFAEFTVLNTDRVMTLPDNLSFERAAALPCPLLTAWQAF-EKIPL-----TKQREVLIVGF-GAVNNLLTQMLNNA  165 (315)
T ss_dssp             TSCCSSBSEEEEETTSEEECCTTSCHHHHHTSHHHHHHHHHHH-TTSCC-----CSCCEEEEECC-SHHHHHHHHHHHHH
T ss_pred             CCCcccccEEEEcHHHhccCcCCCCHHHHhhCccHHHHHHHHH-hhcCC-----CCCCEEEEECC-CHHHHHHHHHHHHc
Confidence            3489999999999999999999999999999999999999999 88888     89999999997 99999999999999


Q ss_pred             CCEEEEEeCcccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCch-HHH
Q 045248           91 NTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPS-AML  169 (240)
Q Consensus        91 g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~-~~~  169 (240)
                      |++|+++++++++++++++|++++++  +  ...+    +.++|++|||+|++.+..++++++++|+++.+|.... ...
T Consensus       166 Ga~Vi~~~~~~~~~~~~~lGa~~v~~--d--~~~v----~~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~  237 (315)
T 3goh_A          166 GYVVDLVSASLSQALAAKRGVRHLYR--E--PSQV----TQKYFAIFDAVNSQNAAALVPSLKANGHIICIQDRIPAPID  237 (315)
T ss_dssp             TCEEEEECSSCCHHHHHHHTEEEEES--S--GGGC----CSCEEEEECC-------TTGGGEEEEEEEEEECCC------
T ss_pred             CCEEEEEEChhhHHHHHHcCCCEEEc--C--HHHh----CCCccEEEECCCchhHHHHHHHhcCCCEEEEEeCCCCcccc
Confidence            99999999668999999999999884  2  2222    6799999999999888899999999999999986432 222


Q ss_pred             HHHHhhheeccceeeeEEEcCCH-------HHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          170 TFALKKLTFSKKQLVPLLLIPKR-------ENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       170 ~~~~~~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      ....+.+.+++.++.+++...+.       +.++++++++++|++++.++++|+++++++||+.+.  ...||+|+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~--~~~gKvvi~~  313 (315)
T 3goh_A          238 PAFTRTISYHEIALGALHDFGDRQDWQILMQQGEALLTLIAQGKMEIAAPDIFRFEQMIEALDHSE--QTKLKTVLTL  313 (315)
T ss_dssp             ----CCSEEEEECGGGHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCCCCEEEEGGGHHHHHHHHH--HHCCCEEEES
T ss_pred             chhhhcceeeEEEeecccccCChhHHHHHHHHHHHHHHHHHCCCcccccceEecHHHHHHHHHHHH--hcCCcEEEEe
Confidence            33334566666666665432232       357899999999999999999999999999999998  6678999875

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=2.1e-37  Score=252.58  Aligned_cols=228  Identities=23%  Similarity=0.346  Sum_probs=190.7

Q ss_pred             cccceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHH
Q 045248            2 CNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGH   81 (240)
Q Consensus         2 c~~~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~   81 (240)
                      |++....+...+|+|+||++++++.++++|++++++++|++++++.|||+++. ..++     ++|++|||+|+ |++|+
T Consensus       106 C~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~-~~~~-----~~g~~VlV~Ga-G~vG~  178 (339)
T 1rjw_A          106 CEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALK-VTGA-----KPGEWVAIYGI-GGLGH  178 (339)
T ss_dssp             CTTCEEBTTTBCCSSBSEEEEEGGGCEECCTTSCHHHHGGGGTHHHHHHHHHH-HHTC-----CTTCEEEEECC-STTHH
T ss_pred             CCCcceeecCCCCcceeeEEechHHEEECCCCCCHHHhhhhhhhHHHHHHHHH-hcCC-----CCCCEEEEECC-CHHHH
Confidence            55555556667899999999999999999999999999999999999999994 4578     89999999996 89999


Q ss_pred             HHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCcc-ccccCCCCCcccEEEeCCCC-CCccccccCCCCCcEE
Q 045248           82 YAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDG-AALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKV  158 (240)
Q Consensus        82 ~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~-~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~i  158 (240)
                      +++|+|+.+|++|++++++ ++++.++++|++.++++.+.+. ..+.... .++|++||++|. ..+..++++++++|++
T Consensus       179 ~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~G~~  257 (339)
T 1rjw_A          179 VAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKV-GGVHAAVVTAVSKPAFQSAYNSIRRGGAC  257 (339)
T ss_dssp             HHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHH-SSEEEEEESSCCHHHHHHHHHHEEEEEEE
T ss_pred             HHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHh-CCCCEEEECCCCHHHHHHHHHHhhcCCEE
Confidence            9999999999999999964 7889999999999998876542 2222212 489999999998 5688999999999999


Q ss_pred             EEeCCCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEE
Q 045248          159 IDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIV  238 (240)
Q Consensus       159 v~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl  238 (240)
                      +.+|..... ..++...+..++.++.+++. ...++++++++++++|++++. +++|+++++++||+.+.+++..||+|+
T Consensus       258 v~~g~~~~~-~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~l~~~g~l~~~-~~~~~l~~~~~A~~~~~~~~~~gKvvi  334 (339)
T 1rjw_A          258 VLVGLPPEE-MPIPIFDTVLNGIKIIGSIV-GTRKDLQEALQFAAEGKVKTI-IEVQPLEKINEVFDRMLKGQINGRVVL  334 (339)
T ss_dssp             EECCCCSSE-EEEEHHHHHHTTCEEEECCS-CCHHHHHHHHHHHHTTSCCCC-EEEEEGGGHHHHHHHHHTTCCSSEEEE
T ss_pred             EEecccCCC-CccCHHHHHhCCcEEEEecc-CCHHHHHHHHHHHHcCCCCcc-EEEEcHHHHHHHHHHHHcCCCceEEEE
Confidence            999975432 22233345567888888653 567889999999999999876 478999999999999999888899998


Q ss_pred             eC
Q 045248          239 EP  240 (240)
Q Consensus       239 ~~  240 (240)
                      ++
T Consensus       335 ~~  336 (339)
T 1rjw_A          335 TL  336 (339)
T ss_dssp             EC
T ss_pred             ec
Confidence            75

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=100.00  E-value=8.1e-38  Score=255.67  Aligned_cols=222  Identities=19%  Similarity=0.251  Sum_probs=190.2

Q ss_pred             ccCCCcccceEEEec-CCceeeCCCCCChhhhhhhchHHHHHHHHHHh-hhCCCcCCCCCCCeEEEEcCCchHHHHHHHH
Q 045248            9 VSHNGGGLAEFAVAK-ESSTVARPSEVSAAEGSGLPVAGLTAHQALTQ-SAGVKLDGSGQQKNILVTAASGGVGHYAVQL   86 (240)
Q Consensus         9 ~~~~~G~~~e~~~v~-~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~-~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~   86 (240)
                      +...+|+|+||++++ ++.++++|+ ++++++|++++++.|||+++.+ ...+     ++|++|+|+| +|++|++++|+
T Consensus       118 g~~~~G~~aey~~v~~~~~~~~~p~-~~~~~aa~l~~~~~ta~~~l~~~~~~~-----~~g~~vlv~G-aG~vG~~a~ql  190 (345)
T 3jv7_A          118 GLGSPGSMAEYMIVDSARHLVPIGD-LDPVAAAPLTDAGLTPYHAISRVLPLL-----GPGSTAVVIG-VGGLGHVGIQI  190 (345)
T ss_dssp             TTTBCCSSBSEEEESCGGGEEECTT-CCHHHHGGGGTTTHHHHHHHHTTGGGC-----CTTCEEEEEC-CSHHHHHHHHH
T ss_pred             CcCCCceeeEEEEecchhceEeCCC-CCHHHhhhhhhhHHHHHHHHHHhccCC-----CCCCEEEEEC-CCHHHHHHHHH
Confidence            445689999999999 999999999 9999999999999999999966 3477     8999999999 59999999999


Q ss_pred             HHhC-CCEEEEEeC-cccHHHHHhcCCCEEEeCCCCcc-ccccCCCCCcccEEEeCCCCC-CccccccCCCCCcEEEEeC
Q 045248           87 AKLG-NTHVTASCG-ARNIEFVKSLGADEVLDYKTPDG-AALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus        87 a~~~-g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~-~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~g  162 (240)
                      |+.+ |++|+++++ +++++.++++|++.++++.+... ...+.+.+.++|++||++|++ .+..++++++++|+++.+|
T Consensus       191 a~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~G~~~~~~~~~~~l~~~G~iv~~G  270 (345)
T 3jv7_A          191 LRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFVGAQSTIDTAQQVVAVDGHISVVG  270 (345)
T ss_dssp             HHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEESSCCHHHHHHHHHHEEEEEEEEECS
T ss_pred             HHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEECCCCHHHHHHHHHHHhcCCEEEEEC
Confidence            9998 569999986 48999999999999999876322 234456677999999999996 6999999999999999999


Q ss_pred             CCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          163 PGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      ........++. .+..++.++.+++. ...++++++++++++|++++ ++++|+++++++||+.+.+++..||+|++|
T Consensus       271 ~~~~~~~~~~~-~~~~~~~~i~g~~~-~~~~~~~~~~~l~~~g~l~~-~~~~~~l~~~~~A~~~~~~~~~~Gkvvv~p  345 (345)
T 3jv7_A          271 IHAGAHAKVGF-FMIPFGASVVTPYW-GTRSELMEVVALARAGRLDI-HTETFTLDEGPAAYRRLREGSIRGRGVVVP  345 (345)
T ss_dssp             CCTTCCEEEST-TTSCTTCEEECCCS-CCHHHHHHHHHHHHTTCCCC-CEEEECSTTHHHHHHHHHHTCCSSEEEECC
T ss_pred             CCCCCCCCcCH-HHHhCCCEEEEEec-CCHHHHHHHHHHHHcCCCce-EEEEEcHHHHHHHHHHHHcCCCceeEEeCC
Confidence            65432222233 56788888888763 67889999999999999998 558999999999999999999999999975

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=100.00  E-value=4.1e-37  Score=250.47  Aligned_cols=224  Identities=23%  Similarity=0.275  Sum_probs=191.5

Q ss_pred             CCcccceEEEec-CCceeeCCCCCChhh---hhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHH
Q 045248           12 NGGGLAEFAVAK-ESSTVARPSEVSAAE---GSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLA   87 (240)
Q Consensus        12 ~~G~~~e~~~v~-~~~~~~ip~~~~~~~---aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a   87 (240)
                      .+|+|+||++++ ++.++++|+++++++   ++++++.+.|||+++.+..++     ++|++|||+||+|++|++++|++
T Consensus        95 ~~G~~aey~~v~~~~~~~~~P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~-----~~g~~vlV~Ga~g~iG~~~~~~a  169 (334)
T 3qwb_A           95 SNSTFAQYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHV-----KKGDYVLLFAAAGGVGLILNQLL  169 (334)
T ss_dssp             CSSCSBSEEEEETTSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCC-----CTTCEEEESSTTBHHHHHHHHHH
T ss_pred             eCCcceEEEEecCcceEEECCCCCCHHHhhhhhhhhhHHHHHHHHHHHhccC-----CCCCEEEEECCCCHHHHHHHHHH
Confidence            379999999999 999999999999999   888899999999999777888     89999999999999999999999


Q ss_pred             HhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCcc--ccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248           88 KLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDG--AALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus        88 ~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~--~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      +..|++|++++++ ++++.++++|++.++++.+.+.  ...+.+.+.++|++||++|+..+..++++++++|+++.+|..
T Consensus       170 ~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~  249 (334)
T 3qwb_A          170 KMKGAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVGKDTFEISLAALKRKGVFVSFGNA  249 (334)
T ss_dssp             HHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEECCGGGGHHHHHHHEEEEEEEEECCCT
T ss_pred             HHCCCEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEECCChHHHHHHHHHhccCCEEEEEcCC
Confidence            9999999999974 8899999999999999887662  233556678999999999998899999999999999999965


Q ss_pred             chHHHHHHHhhheeccceeeeEEE---cCCHH----HHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEE
Q 045248          165 PSAMLTFALKKLTFSKKQLVPLLL---IPKRE----NLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKII  237 (240)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvv  237 (240)
                      ......++...+..+++++.+...   ...++    .++++++++++|++++.++++|+++++++||+.+.+++..||+|
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvv  329 (334)
T 3qwb_A          250 SGLIPPFSITRLSPKNITLVRPQLYGYIADPEEWKYYSDEFFGLVNSKKLNIKIYKTYPLRDYRTAAADIESRKTVGKLV  329 (334)
T ss_dssp             TCCCCCBCGGGGTTTTCEEECCCGGGGSCSHHHHHHHHHHHHHHHHTTSSCCCEEEEEEGGGHHHHHHHHHTTCCCBEEE
T ss_pred             CCCCCCcchhhhhhCceEEEEEEeccccCCHHHHHHHHHHHHHHHHCCCccCceeeEEcHHHHHHHHHHHHhCCCceEEE
Confidence            433223344556667777775432   12333    45789999999999999999999999999999999999999999


Q ss_pred             EeC
Q 045248          238 VEP  240 (240)
Q Consensus       238 l~~  240 (240)
                      +++
T Consensus       330 i~~  332 (334)
T 3qwb_A          330 LEI  332 (334)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            975

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=100.00  E-value=3.2e-38  Score=255.99  Aligned_cols=222  Identities=24%  Similarity=0.254  Sum_probs=185.8

Q ss_pred             CCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHh--hhCCCcCCCCCCC-eEEEEcCCchHHHHHHHHH
Q 045248           11 HNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQ--SAGVKLDGSGQQK-NILVTAASGGVGHYAVQLA   87 (240)
Q Consensus        11 ~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~--~~~~~~~~~~~g~-~vlV~G~~g~vG~~~~~~a   87 (240)
                      ..+|+|+||++++++.++++|+++++++||++++.+.|||+++..  ..++     ++++ +|||+|++|++|++++|+|
T Consensus        93 ~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~-----~~~~g~VlV~Ga~G~vG~~aiqla  167 (324)
T 3nx4_A           93 NHWGGLAERARVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGI-----RPQDGEVVVTGASGGVGSTAVALL  167 (324)
T ss_dssp             TBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTC-----CGGGCCEEESSTTSHHHHHHHHHH
T ss_pred             CCCCceeeEEecCHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhhccc-----CCCCCeEEEECCCcHHHHHHHHHH
Confidence            468999999999999999999999999999999999999998853  3445     4532 4999998899999999999


Q ss_pred             HhCCCEEEEEeC-cccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCch
Q 045248           88 KLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPS  166 (240)
Q Consensus        88 ~~~g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~  166 (240)
                      +.+|++|+++++ +++++.++++|+++++++.+.+.  .+...+.++|++||++|++.+..++++++++|+++.+|....
T Consensus       168 ~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~--~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~G~~~~  245 (324)
T 3nx4_A          168 HKLGYQVAAVSGRESTHGYLKSLGANRILSRDEFAE--SRPLEKQLWAGAIDTVGDKVLAKVLAQMNYGGCVAACGLAGG  245 (324)
T ss_dssp             HHTTCCEEEEESCGGGHHHHHHHTCSEEEEGGGSSC--CCSSCCCCEEEEEESSCHHHHHHHHHTEEEEEEEEECCCTTC
T ss_pred             HHcCCEEEEEeCCHHHHHHHHhcCCCEEEecCCHHH--HHhhcCCCccEEEECCCcHHHHHHHHHHhcCCEEEEEecCCC
Confidence            999999999995 58999999999999999876543  444455689999999998889999999999999999996543


Q ss_pred             HHHHHHHhhheeccceeeeEEEcC-C----HHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          167 AMLTFALKKLTFSKKQLVPLLLIP-K----RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       167 ~~~~~~~~~~~~~~~~i~~~~~~~-~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      ...+++...+..++.++.++.... .    .+.++++++++++|++++. +++|+++++++||+.+.+++..||+|+++
T Consensus       246 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~-~~~~~l~~~~~A~~~~~~~~~~gkvvv~~  323 (324)
T 3nx4_A          246 FALPTTVMPFILRNVRLQGVDSVMTPPARRAEAWARLVKDLPESFYAQA-ATEITLADAPKFADAIINNQVQGRTLVKI  323 (324)
T ss_dssp             SEEEEESHHHHHHCCEEEECCSTTCCHHHHHHHHHHHHHHSCHHHHHHH-EEEEEGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             CCCCCCHHHHhhcCeEEEEEeccccChHHHHHHHHHHHHHHHcCCCCCC-ceeEeHHHHHHHHHHHHhCCCCceEEEec
Confidence            222223334556777888764321 2    3568899999999999877 89999999999999999999999999975

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=100.00  E-value=7.7e-37  Score=250.02  Aligned_cols=229  Identities=24%  Similarity=0.328  Sum_probs=193.6

Q ss_pred             cccceecccCCCcccceEEEecC-CceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHH
Q 045248            2 CNLWRIDVSHNGGGLAEFAVAKE-SSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVG   80 (240)
Q Consensus         2 c~~~~~~~~~~~G~~~e~~~v~~-~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG   80 (240)
                      |++....|...+|+|+||+++++ +.++++ ++++++++|++++++.|||+++ +..++     +++++|||+|++|++|
T Consensus       112 C~~~~~~G~~~~G~~aey~~v~~~~~~~~i-~~~~~~~aa~l~~~~~ta~~~l-~~~~~-----~~g~~vlV~Gagg~iG  184 (347)
T 1jvb_A          112 CDSPRWLGINFDGAYAEYVIVPHYKYMYKL-RRLNAVEAAPLTCSGITTYRAV-RKASL-----DPTKTLLVVGAGGGLG  184 (347)
T ss_dssp             CSSCEEBTTTBCCSSBSEEEESCGGGEEEC-SSSCHHHHGGGGTHHHHHHHHH-HHTTC-----CTTCEEEEETTTSHHH
T ss_pred             CcccccccccCCCcceeEEEecCccceEEe-CCCCHHHcccchhhHHHHHHHH-HhcCC-----CCCCEEEEECCCccHH
Confidence            55555556667899999999999 999999 9999999999999999999999 55778     8999999999877999


Q ss_pred             HHHHHHHHhC-CCEEEEEeC-cccHHHHHhcCCCEEEeCCCCcc-ccc-cCCCCCcccEEEeCCCCC-CccccccCCCCC
Q 045248           81 HYAVQLAKLG-NTHVTASCG-ARNIEFVKSLGADEVLDYKTPDG-AAL-KSPSGRKYDAVIHCATGI-PWSTFEPNLGTN  155 (240)
Q Consensus        81 ~~~~~~a~~~-g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~-~~~-~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~  155 (240)
                      ++++|+++.. |++|+++++ +++.+.++++|++.++++.+.+. ..+ +.+...++|++||++|++ .+..++++++++
T Consensus       185 ~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~  264 (347)
T 1jvb_A          185 TMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQ  264 (347)
T ss_dssp             HHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEE
T ss_pred             HHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEecCCCccHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHhcC
Confidence            9999999999 999999986 47889999999999998876552 222 223214899999999986 689999999999


Q ss_pred             cEEEEeCCCc-hHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcc
Q 045248          156 GKVIDITPGP-SAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATG  234 (240)
Q Consensus       156 G~iv~~g~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~g  234 (240)
                      |+++.+|... ..  .++...+..+++++.+++. ...+.++++++++++|++++.++++|+++++++||+.+.+++..|
T Consensus       265 G~iv~~g~~~~~~--~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~g  341 (347)
T 1jvb_A          265 GKYVMVGLFGADL--HYHAPLITLSEIQFVGSLV-GNQSDFLGIMRLAEAGKVKPMITKTMKLEEANEAIDNLENFKAIG  341 (347)
T ss_dssp             EEEEECCSSCCCC--CCCHHHHHHHTCEEEECCS-CCHHHHHHHHHHHHTTSSCCCCEEEEEGGGHHHHHHHHHTTCCCS
T ss_pred             CEEEEECCCCCCC--CCCHHHHHhCceEEEEEec-cCHHHHHHHHHHHHcCCCCceEEEEEcHHHHHHHHHHHHCCCCcc
Confidence            9999998654 22  2333445667888888653 568899999999999999999989999999999999999998889


Q ss_pred             cEEEeC
Q 045248          235 KIIVEP  240 (240)
Q Consensus       235 kvvl~~  240 (240)
                      |+|+++
T Consensus       342 Kvvl~~  347 (347)
T 1jvb_A          342 RQVLIP  347 (347)
T ss_dssp             EEEEEC
T ss_pred             eEEecC
Confidence            999975

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=100.00  E-value=3.1e-37  Score=247.82  Aligned_cols=223  Identities=24%  Similarity=0.329  Sum_probs=185.5

Q ss_pred             eecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHH
Q 045248            6 RIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQ   85 (240)
Q Consensus         6 ~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~   85 (240)
                      ++.+...+|+|+||++++++.++++|++++++++|+++.++.|||+++.+.. +     ++|++|||+|++|++|++++|
T Consensus        71 rV~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~-~-----~~g~~vlV~Ga~G~vG~~~~~  144 (302)
T 1iz0_A           71 RYAALVPQGGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKRAQ-A-----RPGEKVLVQAAAGALGTAAVQ  144 (302)
T ss_dssp             EEEEECSSCCSBSEEEEEGGGCEECCTTCCHHHHHTSHHHHHHHHHHHHHTT-C-----CTTCEEEESSTTBHHHHHHHH
T ss_pred             EEEEecCCcceeeEEEEcHHHcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhc-C-----CCCCEEEEECCCcHHHHHHHH
Confidence            3444456799999999999999999999999999999999999999997666 7     899999999988999999999


Q ss_pred             HHHhCCCEEEEEeC-cccHHHHHhcCCCEEEeCCC-Ccc-ccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeC
Q 045248           86 LAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKT-PDG-AALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus        86 ~a~~~g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~-~~~-~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g  162 (240)
                      +++.+|++|+++++ +++++.++++|++.++++++ .+. ..+     .++|++|| +|++.+..++++++++|+++.+|
T Consensus       145 ~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~-----~~~d~vid-~g~~~~~~~~~~l~~~G~~v~~g  218 (302)
T 1iz0_A          145 VARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAW-----GGLDLVLE-VRGKEVEESLGLLAHGGRLVYIG  218 (302)
T ss_dssp             HHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHT-----TSEEEEEE-CSCTTHHHHHTTEEEEEEEEEC-
T ss_pred             HHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHh-----cCceEEEE-CCHHHHHHHHHhhccCCEEEEEe
Confidence            99999999999997 58889999999999998765 331 122     57999999 99988999999999999999998


Q ss_pred             CCchHHHHHHHhhheeccceeeeEEE---cCCHHHHHHHHH---HHHCCceEEecCceecchhHHHHHHHHHcCCCcccE
Q 045248          163 PGPSAMLTFALKKLTFSKKQLVPLLL---IPKRENLDFLVK---LVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKI  236 (240)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkv  236 (240)
                      ........++...+..++.++.++..   ....+.++++++   ++++|++++.++++|+++++++||+.+.+++..||+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKv  298 (302)
T 1iz0_A          219 AAEGEVAPIPPLRLMRRNLAVLGFWLTPLLREGALVEEALGFLLPRLGRELRPVVGPVFPFAEAEAAFRALLDRGHTGKV  298 (302)
T ss_dssp             ------CCCCTTHHHHTTCEEEECCHHHHTTCHHHHHHHHHHHGGGBTTTBCCCEEEEEEGGGHHHHHHHTTCTTCCBEE
T ss_pred             CCCCCCCCcCHHHHHhCCCeEEEEeccchhhhHHHHHHHHhhhHHHHcCCcccccceEEcHHHHHHHHHHHHcCCCCceE
Confidence            65432212233445567788887653   135678999999   999999999999999999999999999988888999


Q ss_pred             EEeC
Q 045248          237 IVEP  240 (240)
Q Consensus       237 vl~~  240 (240)
                      |+++
T Consensus       299 vv~~  302 (302)
T 1iz0_A          299 VVRL  302 (302)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9875

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.9e-37  Score=256.40  Aligned_cols=220  Identities=17%  Similarity=0.224  Sum_probs=185.7

Q ss_pred             CCCcccceEEEe-cCCceeeCCCCCChh-hhhhhchHHHHHHHHHHhhhC-CCcCCCCCCCeEEEEcCCchHHHHHHHHH
Q 045248           11 HNGGGLAEFAVA-KESSTVARPSEVSAA-EGSGLPVAGLTAHQALTQSAG-VKLDGSGQQKNILVTAASGGVGHYAVQLA   87 (240)
Q Consensus        11 ~~~G~~~e~~~v-~~~~~~~ip~~~~~~-~aa~~~~~~~ta~~~l~~~~~-~~~~~~~~g~~vlV~G~~g~vG~~~~~~a   87 (240)
                      ..+|+|+||+++ +++.++++|++++++ +|++++ .+.|||+++ +..+ +     ++|++|||+| +|++|++++|+|
T Consensus       144 ~~~G~~aey~~v~~~~~~~~iP~~l~~~~~Aa~~~-~~~ta~~al-~~~~~~-----~~g~~VlV~G-aG~vG~~aiqla  215 (380)
T 1vj0_A          144 HLRGCYSSHIVLDPETDVLKVSEKDDLDVLAMAMC-SGATAYHAF-DEYPES-----FAGKTVVIQG-AGPLGLFGVVIA  215 (380)
T ss_dssp             CCCSSSBSEEEECTTCCEEEECTTSCHHHHHHHTT-HHHHHHHHH-HTCSSC-----CBTCEEEEEC-CSHHHHHHHHHH
T ss_pred             CCCccccceEEEcccceEEECCCCCChHHhHhhhc-HHHHHHHHH-HhcCCC-----CCCCEEEEEC-cCHHHHHHHHHH
Confidence            457999999999 999999999999999 666666 889999999 6677 7     8999999999 899999999999


Q ss_pred             HhCCC-EEEEEeC-cccHHHHHhcCCCEEEeCC---CCc-c-ccccCCCCCcccEEEeCCCCC-CccccccCCCCCcEEE
Q 045248           88 KLGNT-HVTASCG-ARNIEFVKSLGADEVLDYK---TPD-G-AALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTNGKVI  159 (240)
Q Consensus        88 ~~~g~-~v~~~~~-~~~~~~~~~~g~~~v~~~~---~~~-~-~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv  159 (240)
                      +.+|+ +|+++++ +++++.++++|++.+++++   +.+ . ...+.+.+.++|+|||++|.+ .+..++++++++|+++
T Consensus       216 k~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv  295 (380)
T 1vj0_A          216 RSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYS  295 (380)
T ss_dssp             HHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEE
T ss_pred             HHcCCceEEEEcCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            99995 9999996 4889999999999999876   333 1 223445566899999999974 5889999999999999


Q ss_pred             EeCCCc-hHHHHHHHhh-heeccceeeeEEEcCCHHHHHHHHHHHHC--CceEEecCceecchhHHHHHHHHHcCCCccc
Q 045248          160 DITPGP-SAMLTFALKK-LTFSKKQLVPLLLIPKRENLDFLVKLVKE--GKLKTVINSKHPLSKAEDAWAESIDGHATGK  235 (240)
Q Consensus       160 ~~g~~~-~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gk  235 (240)
                      .+|... .....++... +..+++++.+++. ...+.++++++++++  |++++.++++|+++++++||+.+.+++.. |
T Consensus       296 ~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~l~~~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~-K  373 (380)
T 1vj0_A          296 VAGVAVPQDPVPFKVYEWLVLKNATFKGIWV-SDTSHFVKTVSITSRNYQLLSKLITHRLPLKEANKALELMESREAL-K  373 (380)
T ss_dssp             ECCCCSCCCCEEECHHHHTTTTTCEEEECCC-CCHHHHHHHHHHHHTCHHHHGGGCCEEEEGGGHHHHHHHHHHTSCS-C
T ss_pred             EEecCCCCCCeeEchHHHHHhCCeEEEEeec-CCHHHHHHHHHHHHhhcCCeeeEEEEEEeHHHHHHHHHHHhcCCCc-e
Confidence            999654 2122233344 6678888988764 468899999999999  99988889999999999999999988877 9


Q ss_pred             EEEeC
Q 045248          236 IIVEP  240 (240)
Q Consensus       236 vvl~~  240 (240)
                      +|+++
T Consensus       374 vvl~~  378 (380)
T 1vj0_A          374 VILYP  378 (380)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99875

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.5e-37  Score=249.78  Aligned_cols=230  Identities=20%  Similarity=0.273  Sum_probs=191.3

Q ss_pred             cccceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHH
Q 045248            2 CNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGH   81 (240)
Q Consensus         2 c~~~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~   81 (240)
                      |++....+...+|+|+||++++++.++++|++++++++|++++.+.|||+++ ...++     ++|++|||+|++|++|+
T Consensus       111 C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l-~~~~~-----~~g~~vlV~Ga~ggiG~  184 (347)
T 2hcy_A          111 CPHADLSGYTHDGSFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYKAL-KSANL-----MAGHWVAISGAAGGLGS  184 (347)
T ss_dssp             CTTCEEBTTTBCCSSBSEEEEETTTSEEECTTCCHHHHGGGGTHHHHHHHHH-HTTTC-----CTTCEEEEETTTSHHHH
T ss_pred             CccccccccCCCCcceeEEEeccccEEECCCCCCHHHHHHHhhhHHHHHHHH-HhcCC-----CCCCEEEEECCCchHHH
Confidence            5555555666789999999999999999999999999999999999999999 44577     89999999998899999


Q ss_pred             HHHHHHHhCCCEEEEEeC-cccHHHHHhcCCCEEEeCCC-Cc-cccc-cCCCCCcccEEEeCCCC-CCccccccCCCCCc
Q 045248           82 YAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKT-PD-GAAL-KSPSGRKYDAVIHCATG-IPWSTFEPNLGTNG  156 (240)
Q Consensus        82 ~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~-~~-~~~~-~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G  156 (240)
                      +++|+++..|++|+++++ +++.+.++++|++.++|+.+ .+ ...+ +.+.+ ++|++||++|. ..+..++++++++|
T Consensus       185 ~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~-~~D~vi~~~g~~~~~~~~~~~l~~~G  263 (347)
T 2hcy_A          185 LAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDG-GAHGVINVSVSEAAIEASTRYVRANG  263 (347)
T ss_dssp             HHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTS-CEEEEEECSSCHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCC-CCCEEEECCCcHHHHHHHHHHHhcCC
Confidence            999999999999999995 47888999999999988763 33 2222 22334 89999999997 56889999999999


Q ss_pred             EEEEeCCCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccE
Q 045248          157 KVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKI  236 (240)
Q Consensus       157 ~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkv  236 (240)
                      +++.+|........++...+..+++++.+++. ...+.++++++++++|++++. +++|+++++++||+.+.+++..||+
T Consensus       264 ~iv~~g~~~~~~~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~l~~~g~l~~~-~~~~~l~~~~~A~~~~~~~~~~gKv  341 (347)
T 2hcy_A          264 TTVLVGMPAGAKCCSDVFNQVVKSISIVGSYV-GNRADTREALDFFARGLVKSP-IKVVGLSTLPEIYEKMEKGQIVGRY  341 (347)
T ss_dssp             EEEECCCCTTCEEEEEHHHHHHTTCEEEECCC-CCHHHHHHHHHHHHTTSCCCC-EEEEEGGGHHHHHHHHHTTCCSSEE
T ss_pred             EEEEEeCCCCCCCCCCHHHHhhCCcEEEEccC-CCHHHHHHHHHHHHhCCCccc-eEEEcHHHHHHHHHHHHcCCcceeE
Confidence            99999975422222333445567888888653 567889999999999999875 4789999999999999998888999


Q ss_pred             EEeC
Q 045248          237 IVEP  240 (240)
Q Consensus       237 vl~~  240 (240)
                      |+++
T Consensus       342 vv~~  345 (347)
T 2hcy_A          342 VVDT  345 (347)
T ss_dssp             EEES
T ss_pred             EEec
Confidence            9875

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=100.00  E-value=4.3e-37  Score=252.76  Aligned_cols=226  Identities=26%  Similarity=0.344  Sum_probs=188.3

Q ss_pred             CCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHh-
Q 045248           11 HNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKL-   89 (240)
Q Consensus        11 ~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~-   89 (240)
                      ..+|+|+||++++++.++++|++++++++|+++++++|||+++.+..++..+...+|++|||+||+|++|++++|+|+. 
T Consensus       116 ~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~  195 (363)
T 4dvj_A          116 IRPGTNAEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQR  195 (363)
T ss_dssp             TSCCSCBSEEEEEGGGCEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHH
T ss_pred             CCCccceEEEEeCHHHeeECCCCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence            4579999999999999999999999999999999999999999888888211112899999999999999999999998 


Q ss_pred             CCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC-CccccccCCCCCcEEEEeCCCchH
Q 045248           90 GNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTNGKVIDITPGPSA  167 (240)
Q Consensus        90 ~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~g~~~~~  167 (240)
                      .|++|++++++ ++++.++++|++.++++.+.....+....++++|+||||+|++ .+..++++++++|+++.+|.... 
T Consensus       196 ~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-  274 (363)
T 4dvj_A          196 TDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTTHTDKHAAEIADLIAPQGRFCLIDDPSA-  274 (363)
T ss_dssp             CCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECSCHHHHHHHHHHHSCTTCEEEECSCCSS-
T ss_pred             cCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECCCchhhHHHHHHHhcCCCEEEEECCCCc-
Confidence            58899999975 8999999999999999875333344444678999999999975 58899999999999999975432 


Q ss_pred             HHHHHHhhheeccceeeeEEEc-------CC----HHHHHHHHHHHHCCceEEecCcee---cchhHHHHHHHHHcCCCc
Q 045248          168 MLTFALKKLTFSKKQLVPLLLI-------PK----RENLDFLVKLVKEGKLKTVINSKH---PLSKAEDAWAESIDGHAT  233 (240)
Q Consensus       168 ~~~~~~~~~~~~~~~i~~~~~~-------~~----~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~a~~~~~~~~~~  233 (240)
                         ++...+..+++++.+....       ..    .+.++++++++++|++++.+++++   +++++++||+.+.+++..
T Consensus       275 ---~~~~~~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~~~~l~~~~~A~~~~~~~~~~  351 (363)
T 4dvj_A          275 ---FDIMLFKRKAVSIHHELMFTRPMFGTPDMSEQGRLLNDVSRLVDEGRLRTTLTNRLSPINAANLKQAHALVESGTAR  351 (363)
T ss_dssp             ---CCGGGGTTTTCEEEECCTTHHHHHTCTTTHHHHHHHHHHHHHHHHTSSCCCEEEEECSCSHHHHHHHHHHHHHTCCC
T ss_pred             ---cchHHHhhccceEEEEEeeccccccCcchhhHHHHHHHHHHHHHCCCeeccccceecCCCHHHHHHHHHHHHhCCCc
Confidence               2344555667777664321       11    457899999999999998887665   999999999999999999


Q ss_pred             ccEEEeC
Q 045248          234 GKIIVEP  240 (240)
Q Consensus       234 gkvvl~~  240 (240)
                      ||+|++|
T Consensus       352 GKvVl~~  358 (363)
T 4dvj_A          352 GKVVIEG  358 (363)
T ss_dssp             SEEEEEC
T ss_pred             eEEEEeC
Confidence            9999975

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=100.00  E-value=3.1e-37  Score=252.20  Aligned_cols=222  Identities=21%  Similarity=0.276  Sum_probs=187.6

Q ss_pred             CCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCC------CCCeEEEEcCCchHHHHHH
Q 045248           11 HNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSG------QQKNILVTAASGGVGHYAV   84 (240)
Q Consensus        11 ~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~------~g~~vlV~G~~g~vG~~~~   84 (240)
                      ..+|+|+||++++++.++++|++++++++|++++++.|||+++.+.+++     +      +|++|||+||+|++|++++
T Consensus        94 ~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~l~~~~~~-----~~~~~~~~g~~VlV~gg~G~vG~~a~  168 (346)
T 3fbg_A           94 DQNGSNAEYQLINERLVAKAPKNISAEQAVSLPLTGITAYETLFDVFGI-----SRNRNENEGKTLLIINGAGGVGSIAT  168 (346)
T ss_dssp             TSCCSSBSEEEEEGGGEEECCSSSCHHHHTTSHHHHHHHHHHHHTTSCC-----CSSHHHHTTCEEEEESTTSHHHHHHH
T ss_pred             CCCcceeEEEEEChHHeEECCCCCCHHHhhhcchhHHHHHHHHHHhcCC-----ccccccCCCCEEEEEcCCCHHHHHHH
Confidence            3579999999999999999999999999999999999999999888888     6      8999999988999999999


Q ss_pred             HHHHhCCCEEEEEeC-cccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC-ccccccCCCCCcEEEEeC
Q 045248           85 QLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP-WSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus        85 ~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~g  162 (240)
                      |+|+.+|++|+++++ +++++.++++|++.++++.+.....+....++++|++|||+|+.. +..++++++++|+++.++
T Consensus       169 qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~~g~~~~~~~~~~~l~~~G~iv~~~  248 (346)
T 3fbg_A          169 QIAKAYGLRVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYVFCTFNTDMYYDDMIQLVKPRGHIATIV  248 (346)
T ss_dssp             HHHHHTTCEEEEECCSHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHEEEEEEEEESS
T ss_pred             HHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEEEECCCchHHHHHHHHHhccCCEEEEEC
Confidence            999999999999997 589999999999999988753333333346678999999999755 789999999999999987


Q ss_pred             CCchHHHHHHHhhheeccceeeeEEEcC-----------CHHHHHHHHHHHHCCceEEecCcee---cchhHHHHHHHHH
Q 045248          163 PGPSAMLTFALKKLTFSKKQLVPLLLIP-----------KRENLDFLVKLVKEGKLKTVINSKH---PLSKAEDAWAESI  228 (240)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~a~~~~~  228 (240)
                      .....   ++...+..+++++.+.+...           ..+.++++++++++|++++.++++|   +++++++||+.+.
T Consensus       249 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~~~~l~~~~~A~~~~~  325 (346)
T 3fbg_A          249 AFEND---QDLNALKPKSLSFSHEFMFARPLNQTDDMIKHHEYLEDITNKVEQNIYQPTTTKVIEGLTTENIYQAHQILE  325 (346)
T ss_dssp             CCSSC---BCGGGGTTTTCEEEECCTTHHHHTTCTTTHHHHHHHHHHHHHHHTTSSCCCEEEEEESCCHHHHHHHHHHHH
T ss_pred             CCCCC---CccccccccceEEEEEEEecccccchhhHHHHHHHHHHHHHHHHCCCEECCccceecCCCHHHHHHHHHHHh
Confidence            54321   23344555666776643210           1356899999999999999888877   9999999999999


Q ss_pred             cCCCcccEEEeC
Q 045248          229 DGHATGKIIVEP  240 (240)
Q Consensus       229 ~~~~~gkvvl~~  240 (240)
                      +++..||+|+++
T Consensus       326 ~g~~~GKvvl~~  337 (346)
T 3fbg_A          326 SNTMIGKLVINL  337 (346)
T ss_dssp             TTCCCSEEEEEC
T ss_pred             cCCcceEEEEec
Confidence            999999999974

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2e-36  Score=249.20  Aligned_cols=218  Identities=19%  Similarity=0.278  Sum_probs=183.4

Q ss_pred             CCCcccceEEEecCCceeeCCCC-CChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHh
Q 045248           11 HNGGGLAEFAVAKESSTVARPSE-VSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKL   89 (240)
Q Consensus        11 ~~~G~~~e~~~v~~~~~~~ip~~-~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~   89 (240)
                      ..+|+|+||++++++.++++|++ ++++++|++++++.|||+++. ..++     ++|++|||+| +|++|++++|+|+.
T Consensus       144 ~~~G~~aeyv~v~~~~~~~~P~~~ls~~~aa~l~~~~~tA~~al~-~~~~-----~~g~~VlV~G-aG~vG~~aiqlak~  216 (369)
T 1uuf_A          144 HTLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCAGITTYSPLR-HWQA-----GPGKKVGVVG-IGGLGHMGIKLAHA  216 (369)
T ss_dssp             BCCCSSBSEEEEEGGGCEECCSCGGGHHHHGGGGTHHHHHHHHHH-HTTC-----CTTCEEEEEC-CSHHHHHHHHHHHH
T ss_pred             CCCCcccceEEEcchhEEECCCCCCCHHHhhhhhhhHHHHHHHHH-hcCC-----CCCCEEEEEC-CCHHHHHHHHHHHH
Confidence            45799999999999999999999 999999999999999999995 4677     8999999999 59999999999999


Q ss_pred             CCCEEEEEeC-cccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC-CccccccCCCCCcEEEEeCCCchH
Q 045248           90 GNTHVTASCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTNGKVIDITPGPSA  167 (240)
Q Consensus        90 ~g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~g~~~~~  167 (240)
                      +|++|+++++ +++++.++++|++.++++.+.+.  .+... .++|++||++|.+ .+..++++++++|+++.+|.....
T Consensus       217 ~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~--~~~~~-~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~  293 (369)
T 1uuf_A          217 MGAHVVAFTTSEAKREAAKALGADEVVNSRNADE--MAAHL-KSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATP  293 (369)
T ss_dssp             TTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHH--HHTTT-TCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC---
T ss_pred             CCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHH--HHHhh-cCCCEEEECCCCHHHHHHHHHHhccCCEEEEeccCCCC
Confidence            9999999995 58999999999999998876431  11111 5899999999986 588999999999999999976433


Q ss_pred             HHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          168 MLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       168 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      ...++...+..+++++.+++. ...+.++++++++++|++++.+ ++|+++++++||+.+.+++..||+|+++
T Consensus       294 ~~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~l~~~g~i~~~i-~~~~l~~~~~A~~~~~~~~~~gKvvi~~  364 (369)
T 1uuf_A          294 HKSPEVFNLIMKRRAIAGSMI-GGIPETQEMLDFCAEHGIVADI-EMIRADQINEAYERMLRGDVKYRFVIDN  364 (369)
T ss_dssp             ----CHHHHHTTTCEEEECCS-CCHHHHHHHHHHHHHHTCCCCE-EEECGGGHHHHHHHHHTTCSSSEEEEEG
T ss_pred             ccccCHHHHHhCCcEEEEeec-CCHHHHHHHHHHHHhCCCCcce-EEEcHHHHHHHHHHHHcCCCceEEEEec
Confidence            223445556678888888763 5678899999999999998876 4799999999999999988889999864

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=100.00  E-value=5.4e-37  Score=251.79  Aligned_cols=224  Identities=19%  Similarity=0.215  Sum_probs=182.1

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g   91 (240)
                      .+|+|+||++++++.++++|+++++++||++++.+.|||+++.+..++     ++|++|||+|++|++|++++|+|+.+|
T Consensus       118 ~~G~~aey~~v~~~~~~~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~~~-----~~g~~VlV~Ga~G~vG~~aiqlak~~G  192 (357)
T 1zsy_A          118 GLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQL-----QPGDSVIQNASNSGVGQAVIQIAAALG  192 (357)
T ss_dssp             CSCCSBSEEEEEGGGEEEECSSSCHHHHHHTTSHHHHHHHHHHHSSCC-----CTTCEEEESSTTSHHHHHHHHHHHHHT
T ss_pred             CCccceeEEecCHHHcEECCCCCCHHHHhhhcccHHHHHHHHHHHhcc-----CCCCEEEEeCCcCHHHHHHHHHHHHcC
Confidence            469999999999999999999999999999998889999999777888     899999999988999999999999999


Q ss_pred             CEEEEEeCc-c----cHHHHHhcCCCEEEeCCCCc-cccccCCCCC-cccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248           92 THVTASCGA-R----NIEFVKSLGADEVLDYKTPD-GAALKSPSGR-KYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus        92 ~~v~~~~~~-~----~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      ++++++++. +    +.+.++++|++.++++.+.. ....+.+.+. ++|+||||+|++....++++++++|+++.+|..
T Consensus       193 a~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~~  272 (357)
T 1zsy_A          193 LRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMPQPRLALNCVGGKSSTELLRQLARGGTMVTYGGM  272 (357)
T ss_dssp             CEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHHHHSGGGGGTTSSSCCCSEEEESSCHHHHHHHHTTSCTTCEEEECCCC
T ss_pred             CEEEEEecCccchHHHHHHHHhcCCcEEEecCcchHHHHHHHHhCCCCceEEEECCCcHHHHHHHHhhCCCCEEEEEecC
Confidence            988888743 2    46788999999999865321 1222223322 699999999987767789999999999999854


Q ss_pred             chHHHHHHHhhheeccceeeeEEEc-----CC----HHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCccc
Q 045248          165 PSAMLTFALKKLTFSKKQLVPLLLI-----PK----RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGK  235 (240)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~i~~~~~~-----~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gk  235 (240)
                      ......++...+.++++++.+++..     ..    .+.++++++++++|++++.+.++|+++++++||+.+.+++..||
T Consensus       273 ~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~gK  352 (357)
T 1zsy_A          273 AKQPVVASVSLLIFKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAPACSQVPLQDYQSALEASMKPFISSK  352 (357)
T ss_dssp             TTCCBCCCHHHHHHSCCEEEECCHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCCEEEEEGGGHHHHHHHHTSSSCSSE
T ss_pred             CCCCCCCCHHHHHhcCceEEEEEcchhcccCCHHHHHHHHHHHHHHHHcCCCcCccceEEcHHHHHHHHHHHHhCCCCCc
Confidence            3222223333455678888876531     01    34678999999999999887789999999999999998888899


Q ss_pred             EEEeC
Q 045248          236 IIVEP  240 (240)
Q Consensus       236 vvl~~  240 (240)
                      +|+++
T Consensus       353 vvl~~  357 (357)
T 1zsy_A          353 QILTM  357 (357)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99975

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=2.2e-37  Score=255.11  Aligned_cols=229  Identities=18%  Similarity=0.252  Sum_probs=191.7

Q ss_pred             CcccceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHH
Q 045248            1 MCNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVG   80 (240)
Q Consensus         1 ~c~~~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG   80 (240)
                      +|.+....+...+|+|+||++++++.++++|+++++++|| ++..+.|||+++ +..++     ++|++|||+| +|++|
T Consensus       124 ~C~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa-l~~~~~ta~~~l-~~~~~-----~~g~~VlV~G-aG~vG  195 (370)
T 4ej6_A          124 LCRNLRAIGIHRDGGFAEYVLVPRKQAFEIPLTLDPVHGA-FCEPLACCLHGV-DLSGI-----KAGSTVAILG-GGVIG  195 (370)
T ss_dssp             GCTTCEEBTTTBCCSSBSEEEEEGGGEEEECTTSCTTGGG-GHHHHHHHHHHH-HHHTC-----CTTCEEEEEC-CSHHH
T ss_pred             cCCCccccCCCCCCcceEEEEEchhhEEECCCCCCHHHHh-hhhHHHHHHHHH-HhcCC-----CCCCEEEEEC-CCHHH
Confidence            3667777777789999999999999999999999999998 666788999999 88888     8999999999 59999


Q ss_pred             HHHHHHHHhCCC-EEEEEeCc-ccHHHHHhcCCCEEEeCCCCcc-ccc-c---CCCCCcccEEEeCCCC-CCccccccCC
Q 045248           81 HYAVQLAKLGNT-HVTASCGA-RNIEFVKSLGADEVLDYKTPDG-AAL-K---SPSGRKYDAVIHCATG-IPWSTFEPNL  152 (240)
Q Consensus        81 ~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~-~~~-~---~~~~~~~d~v~d~~g~-~~~~~~~~~l  152 (240)
                      ++++|+|+++|+ +|++++++ ++.+.++++|++.++++++.+. ..+ +   .+.+ ++|+|||++|. ..+..+++++
T Consensus       196 ~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~g-g~Dvvid~~G~~~~~~~~~~~l  274 (370)
T 4ej6_A          196 LLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPG-GVDVVIECAGVAETVKQSTRLA  274 (370)
T ss_dssp             HHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTT-CEEEEEECSCCHHHHHHHHHHE
T ss_pred             HHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCC-CCCEEEECCCCHHHHHHHHHHh
Confidence            999999999999 89998864 7899999999999999877662 222 2   3444 99999999996 5689999999


Q ss_pred             CCCcEEEEeCCCch-HHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceE--EecCceecchhHHHHHHHHHc
Q 045248          153 GTNGKVIDITPGPS-AMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLK--TVINSKHPLSKAEDAWAESID  229 (240)
Q Consensus       153 ~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~a~~~~~~  229 (240)
                      +++|+++.+|.... ...+++...+..+++++.+++.  ....++++++++++|+++  ++++++|+|+++++||+.+.+
T Consensus       275 ~~~G~vv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~--~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~  352 (370)
T 4ej6_A          275 KAGGTVVILGVLPQGEKVEIEPFDILFRELRVLGSFI--NPFVHRRAADLVATGAIEIDRMISRRISLDEAPDVISNPAA  352 (370)
T ss_dssp             EEEEEEEECSCCCTTCCCCCCHHHHHHTTCEEEECCS--CTTCHHHHHHHHHTTCSCCGGGEEEEECGGGHHHHHHSCCC
T ss_pred             ccCCEEEEEeccCCCCccccCHHHHHhCCcEEEEecc--ChHHHHHHHHHHHcCCCChhHcEEEEEEHHHHHHHHHHHHc
Confidence            99999999996543 1233445567788899998764  346699999999999985  578899999999999999988


Q ss_pred             CC-CcccEEEeC
Q 045248          230 GH-ATGKIIVEP  240 (240)
Q Consensus       230 ~~-~~gkvvl~~  240 (240)
                      ++ ..+|+++++
T Consensus       353 ~~~~~~kvv~~~  364 (370)
T 4ej6_A          353 AGEVKVLVIPSA  364 (370)
T ss_dssp             TTCSEEEECCC-
T ss_pred             CCCCeEEEEEcc
Confidence            76 456887754

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=100.00  E-value=1.3e-36  Score=247.41  Aligned_cols=223  Identities=21%  Similarity=0.270  Sum_probs=187.5

Q ss_pred             CcccceEEEecCCceeeCCCCCChhh--hhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAE--GSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLG   90 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~--aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~   90 (240)
                      +|+|+||++++++.++++|+++++++  +|+++.++.|||+++.+..++     +++++|||+|++|++|++++|+++..
T Consensus        95 ~G~~aey~~v~~~~~~~iP~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~-----~~g~~vlV~Ga~ggiG~~~~~~a~~~  169 (333)
T 1wly_A           95 LGAYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKV-----KPGDYVLIHAAAGGMGHIMVPWARHL  169 (333)
T ss_dssp             CCCSBSEEEEEGGGCEECCTTCCCCHHHHHHHHHHHHHHHHHHHTTSCC-----CTTCEEEETTTTSTTHHHHHHHHHHT
T ss_pred             CCcceeEEEecHHHcEeCCCCCChHHhCccchhhhHHHHHHHHHHhhCC-----CCCCEEEEECCccHHHHHHHHHHHHC
Confidence            79999999999999999999999999  999999999999999778888     89999999998899999999999999


Q ss_pred             CCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCc-cc-cccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchH
Q 045248           91 NTHVTASCGA-RNIEFVKSLGADEVLDYKTPD-GA-ALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSA  167 (240)
Q Consensus        91 g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~-~~-~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~  167 (240)
                      |++|++++++ ++.+.++++|++.++++++.+ .. ..+.+.+.++|++||++|+..+..++++++++|+++.+|.....
T Consensus       170 G~~Vi~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~iv~~g~~~~~  249 (333)
T 1wly_A          170 GATVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVVREITGGKGVDVVYDSIGKDTLQKSLDCLRPRGMCAAYGHASGV  249 (333)
T ss_dssp             TCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEECSCTTTHHHHHHTEEEEEEEEECCCTTCC
T ss_pred             CCEEEEEeCCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHhCCCCCeEEEECCcHHHHHHHHHhhccCCEEEEEecCCCC
Confidence            9999999976 688899999999999887655 22 23334456899999999998899999999999999999965421


Q ss_pred             HHHHHHh-hheecc--ceeeeEEEc--CC----HHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEE
Q 045248          168 MLTFALK-KLTFSK--KQLVPLLLI--PK----RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIV  238 (240)
Q Consensus       168 ~~~~~~~-~~~~~~--~~i~~~~~~--~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl  238 (240)
                      ...++.. .+..++  .++.+++..  ..    .+.++++++++++|++++.++++|+++++++||+.+.+++..||+|+
T Consensus       250 ~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi  329 (333)
T 1wly_A          250 ADPIRVVEDLGVRGSLFITRPALWHYMSNRSEIDEGSKCLFDAVKAGVLHSSVAKTFPLREAAAAHKYMGGRQTIGSIVL  329 (333)
T ss_dssp             CCCCCHHHHTTTTTSCEEECCCGGGGSCSHHHHHHHHHHHHHHHHTTSCCCCEEEEEEGGGHHHHHHHHHHCSCCSEEEE
T ss_pred             cCCCChhHhhhhcCCcEEEEEeehhhccCHHHHHHHHHHHHHHHHCCCcCCCcceEEeHHHHHHHHHHHHcCCCceEEEE
Confidence            1122233 445566  667665321  12    34689999999999999999999999999999999999888899998


Q ss_pred             eC
Q 045248          239 EP  240 (240)
Q Consensus       239 ~~  240 (240)
                      ++
T Consensus       330 ~~  331 (333)
T 1wly_A          330 LP  331 (333)
T ss_dssp             ET
T ss_pred             Ee
Confidence            75

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=100.00  E-value=5.7e-37  Score=251.32  Aligned_cols=231  Identities=23%  Similarity=0.336  Sum_probs=190.2

Q ss_pred             ceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHH
Q 045248            5 WRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAV   84 (240)
Q Consensus         5 ~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~   84 (240)
                      +++.+...+|+|+||++++++.++++|+++++++||+++.++.|||+++.+.+++     ++|++|||+||+|++|++++
T Consensus       106 drV~~~~~~G~~aey~~v~~~~~~~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~-----~~g~~vlV~Ga~ggiG~~~~  180 (354)
T 2j8z_A          106 DTAMALLPGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNV-----QAGDYVLIHAGLSGVGTAAI  180 (354)
T ss_dssp             CEEEEECSSCCSBSEEEEEGGGEEECCTTCCHHHHTTSHHHHHHHHHHHTTTSCC-----CTTCEEEESSTTSHHHHHHH
T ss_pred             CEEEEecCCCcceeEEEeCHHHcEECCCCCCHHHHHhccchHHHHHHHHHHhcCC-----CCCCEEEEECCccHHHHHHH
Confidence            4455555679999999999999999999999999999999999999999878888     89999999999999999999


Q ss_pred             HHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCcc-c-cccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEe
Q 045248           85 QLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDG-A-ALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDI  161 (240)
Q Consensus        85 ~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~-~-~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~  161 (240)
                      |+++..|++|++++++ ++.+.++++|++.++++.+.+. . ..+.+.+.++|++||++|++.+..++++++++|+++.+
T Consensus       181 ~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~G~~~~~~~~~~l~~~G~iv~~  260 (354)
T 2j8z_A          181 QLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGGSYWEKNVNCLALDGRWVLY  260 (354)
T ss_dssp             HHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCGGGHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChHHHHHHHHHhcCCCceEEEECCCchHHHHHHHhccCCCEEEEE
Confidence            9999999999999964 7888899999999998876552 2 23344556899999999998888999999999999999


Q ss_pred             CCCchHHHHHHH-hhheeccceeeeEEEcCCH-H--------HHHHHHHHHHCC---ceEEecCceecchhHHHHHHHHH
Q 045248          162 TPGPSAMLTFAL-KKLTFSKKQLVPLLLIPKR-E--------NLDFLVKLVKEG---KLKTVINSKHPLSKAEDAWAESI  228 (240)
Q Consensus       162 g~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~-~--------~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~a~~~~~  228 (240)
                      |........++. ..+..+++++.+++..... +        .++++++++++|   +++++++++|+++++++||+.+.
T Consensus       261 G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~i~~~~~l~~~~~A~~~~~  340 (354)
T 2j8z_A          261 GLMGGGDINGPLFSKLLFKRGSLITSLLRSRDNKYKQMLVNAFTEQILPHFSTEGPQRLLPVLDRIYPVTEIQEAHKYME  340 (354)
T ss_dssp             CCTTCSCCCSCHHHHHHHTTCEEEECCSTTCCHHHHHHHHHHHHHHTGGGGTC---CCCCCCEEEEEEGGGHHHHHHHHH
T ss_pred             eccCCCccCCChhHHHHhCCCEEEEEEcccccccccHHHHHHHHHHHHHHHHcCCCccccCccceEEcHHHHHHHHHHHH
Confidence            965432222233 4455677888886542211 1        234688899999   89999999999999999999999


Q ss_pred             cCCCcccEEEeC
Q 045248          229 DGHATGKIIVEP  240 (240)
Q Consensus       229 ~~~~~gkvvl~~  240 (240)
                      +++..||+|+++
T Consensus       341 ~~~~~gKvvv~~  352 (354)
T 2j8z_A          341 ANKNIGKIVLEL  352 (354)
T ss_dssp             TTCCSSEEEEEC
T ss_pred             hCCCCceEEEec
Confidence            888889999874

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.6e-36  Score=248.68  Aligned_cols=228  Identities=20%  Similarity=0.257  Sum_probs=187.7

Q ss_pred             cccceeccc-CCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHH
Q 045248            2 CNLWRIDVS-HNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVG   80 (240)
Q Consensus         2 c~~~~~~~~-~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG   80 (240)
                      |++..+.+. ..+|+|+||++++++.++++|+++++++||++ ..+.|||+++ +..++     ++|++|||+| +|++|
T Consensus       110 C~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~-~~~~ta~~al-~~~~~-----~~g~~VlV~G-aG~vG  181 (352)
T 1e3j_A          110 CPDLTFCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALL-EPLSVGVHAC-RRAGV-----QLGTTVLVIG-AGPIG  181 (352)
T ss_dssp             CTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTSCHHHHHTH-HHHHHHHHHH-HHHTC-----CTTCEEEEEC-CSHHH
T ss_pred             CCCCcccCcCCCCccceeEEEeChHHeEECcCCCCHHHHHhh-chHHHHHHHH-HhcCC-----CCCCEEEEEC-CCHHH
Confidence            555555444 24799999999999999999999999999876 4667999999 78888     8999999999 59999


Q ss_pred             HHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCC-Cc-cccc-cCCC---CCcccEEEeCCCCC-CccccccCC
Q 045248           81 HYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKT-PD-GAAL-KSPS---GRKYDAVIHCATGI-PWSTFEPNL  152 (240)
Q Consensus        81 ~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~-~~-~~~~-~~~~---~~~~d~v~d~~g~~-~~~~~~~~l  152 (240)
                      ++++|+|+.+|++|++++++ ++++.++++|++.++++++ .+ ...+ +.+.   +.++|++||++|+. .+..+++++
T Consensus       182 ~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l  261 (352)
T 1e3j_A          182 LVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINIT  261 (352)
T ss_dssp             HHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHS
T ss_pred             HHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEECCCCHHHHHHHHHHH
Confidence            99999999999999888864 7899999999999999874 33 2222 3333   57899999999986 588999999


Q ss_pred             CCCcEEEEeCCCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceE--EecCceecchhHHHHHHHHHcC
Q 045248          153 GTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLK--TVINSKHPLSKAEDAWAESIDG  230 (240)
Q Consensus       153 ~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~a~~~~~~~  230 (240)
                      +++|+++.+|.... ...++...+..+++++.+++.  ..+.++++++++++|+++  ++++++|+++++++||+.+.++
T Consensus       262 ~~~G~iv~~G~~~~-~~~~~~~~~~~~~~~i~g~~~--~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~  338 (352)
T 1e3j_A          262 RTGGTLMLVGMGSQ-MVTVPLVNACAREIDIKSVFR--YCNDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKK  338 (352)
T ss_dssp             CTTCEEEECSCCSS-CCCCCHHHHHTTTCEEEECCS--CSSCHHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHHC
T ss_pred             hcCCEEEEEecCCC-CccccHHHHHhcCcEEEEecc--chHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHhcC
Confidence            99999999986432 222334566778888888653  256799999999999964  5778899999999999999988


Q ss_pred             C-CcccEEEeC
Q 045248          231 H-ATGKIIVEP  240 (240)
Q Consensus       231 ~-~~gkvvl~~  240 (240)
                      + ..+|+|+++
T Consensus       339 ~~~~~Kvvi~~  349 (352)
T 1e3j_A          339 ADNTIKVMISC  349 (352)
T ss_dssp             CTTCSEEEEEC
T ss_pred             CCCceEEEEec
Confidence            7 689999875

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=100.00  E-value=4e-36  Score=246.60  Aligned_cols=216  Identities=20%  Similarity=0.243  Sum_probs=182.1

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCC-CCCeEEEEcCCchHHHHHHHHHHhC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSG-QQKNILVTAASGGVGHYAVQLAKLG   90 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~-~g~~vlV~G~~g~vG~~~~~~a~~~   90 (240)
                      .+|+|+||++++++.++++|++++++++|++++++.|||+++ ...++     + +|++|||+| +|++|++++|+|+.+
T Consensus       131 ~~G~~aey~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~~l-~~~~~-----~~~g~~VlV~G-aG~vG~~a~qlak~~  203 (357)
T 2cf5_A          131 TQGGFAKATVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPL-SHFGL-----KQPGLRGGILG-LGGVGHMGVKIAKAM  203 (357)
T ss_dssp             CCCSSBSCEEEEGGGEEECCSSCCHHHHTGGGTHHHHHHHHH-HHTST-----TSTTCEEEEEC-CSHHHHHHHHHHHHH
T ss_pred             CCCccccEEEechhhEEECcCCCCHHHhhhhhhhHHHHHHHH-HhcCC-----CCCCCEEEEEC-CCHHHHHHHHHHHHC
Confidence            579999999999999999999999999999999999999999 45677     7 999999999 699999999999999


Q ss_pred             CCEEEEEeCc-ccHHHHH-hcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC-CccccccCCCCCcEEEEeCCCchH
Q 045248           91 NTHVTASCGA-RNIEFVK-SLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTNGKVIDITPGPSA  167 (240)
Q Consensus        91 g~~v~~~~~~-~~~~~~~-~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~g~~~~~  167 (240)
                      |++|++++++ ++++.++ ++|+++++++.+.+ ...+.+  .++|++||++|.+ .+..++++++++|+++.+|.....
T Consensus       204 Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~-~~~~~~--~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~  280 (357)
T 2cf5_A          204 GHHVTVISSSNKKREEALQDLGADDYVIGSDQA-KMSELA--DSLDYVIDTVPVHHALEPYLSLLKLDGKLILMGVINNP  280 (357)
T ss_dssp             TCEEEEEESSTTHHHHHHTTSCCSCEEETTCHH-HHHHST--TTEEEEEECCCSCCCSHHHHTTEEEEEEEEECSCCSSC
T ss_pred             CCeEEEEeCChHHHHHHHHHcCCceeeccccHH-HHHHhc--CCCCEEEECCCChHHHHHHHHHhccCCEEEEeCCCCCC
Confidence            9999999964 7888887 99999999876532 111222  3799999999975 689999999999999999965422


Q ss_pred             HHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          168 MLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       168 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      ...++.. +..+++++.+++. ...+.++++++++++|++++.+ ++|+++++++||+.+.+++..||+|+++
T Consensus       281 ~~~~~~~-~~~~~~~i~g~~~-~~~~~~~~~~~l~~~g~l~~~~-~~~~l~~~~~A~~~~~~~~~~gKvvi~~  350 (357)
T 2cf5_A          281 LQFLTPL-LMLGRKVITGSFI-GSMKETEEMLEFCKEKGLSSII-EVVKMDYVNTAFERLEKNDVRYRFVVDV  350 (357)
T ss_dssp             CCCCHHH-HHHHTCEEEECCS-CCHHHHHHHHHHHHHTTCCCCE-EEEEGGGHHHHHHHHHTTCSSSEEEEET
T ss_pred             ccccCHH-HHhCccEEEEEcc-CCHHHHHHHHHHHHcCCCCCce-EEEeHHHHHHHHHHHHCCCCceEEEEeC
Confidence            1112223 5667888888653 5678899999999999998766 6999999999999999998889999874

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=1.1e-36  Score=248.63  Aligned_cols=218  Identities=23%  Similarity=0.352  Sum_probs=184.3

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g   91 (240)
                      .+|+|+||++++++.++++|++++++++|++++++.|||+++.+.+++     ++|++|||+||+|++|++++|+|+..|
T Consensus       101 ~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~-----~~g~~VlV~Ga~g~iG~~~~q~a~~~G  175 (343)
T 3gaz_A          101 LQGTHAQFAAVDARLLASKPAALTMRQASVLPLVFITAWEGLVDRAQV-----QDGQTVLIQGGGGGVGHVAIQIALARG  175 (343)
T ss_dssp             CCCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTTTTCC-----CTTCEEEEETTTSHHHHHHHHHHHHTT
T ss_pred             CCcceeeEEEecHHHeeeCCCCCCHHHHHHhhhhHHHHHHHHHHhcCC-----CCCCEEEEecCCCHHHHHHHHHHHHCC
Confidence            479999999999999999999999999999999999999999888888     899999999999999999999999999


Q ss_pred             CEEEEEeCcccHHHHHhcCCCEEEeCCCCc-c-ccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchHHH
Q 045248           92 THVTASCGARNIEFVKSLGADEVLDYKTPD-G-AALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAML  169 (240)
Q Consensus        92 ~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~-~-~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~  169 (240)
                      ++|+++.++++++.++++|++. ++ .+.+ . ...+.+.+.++|++||++|++.+..++++++++|+++.+|.....  
T Consensus       176 a~Vi~~~~~~~~~~~~~lGa~~-i~-~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~g~~~~~--  251 (343)
T 3gaz_A          176 ARVFATARGSDLEYVRDLGATP-ID-ASREPEDYAAEHTAGQGFDLVYDTLGGPVLDASFSAVKRFGHVVSCLGWGTH--  251 (343)
T ss_dssp             CEEEEEECHHHHHHHHHHTSEE-EE-TTSCHHHHHHHHHTTSCEEEEEESSCTHHHHHHHHHEEEEEEEEESCCCSCC--
T ss_pred             CEEEEEeCHHHHHHHHHcCCCE-ec-cCCCHHHHHHHHhcCCCceEEEECCCcHHHHHHHHHHhcCCeEEEEcccCcc--
Confidence            9999996668899999999988 77 4444 2 233456677999999999988899999999999999999865421  


Q ss_pred             HHHHhhheeccceeeeEEEc----------CCHHHHHHHHHHHHCCceEEecC-ceecchhHHHHHHHHHcCCC----cc
Q 045248          170 TFALKKLTFSKKQLVPLLLI----------PKRENLDFLVKLVKEGKLKTVIN-SKHPLSKAEDAWAESIDGHA----TG  234 (240)
Q Consensus       170 ~~~~~~~~~~~~~i~~~~~~----------~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~a~~~~~~~~~----~g  234 (240)
                        +...+.+++.++.+++..          ...+.++++++++++|++++.++ ++|+++++++||+.+.+++.    .|
T Consensus       252 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~~l~~~~~A~~~~~~~~~~Gr~~G  329 (343)
T 3gaz_A          252 --KLAPLSFKQATYSGVFTLHTLLANEGLAHFGEMLREADALVQTGKLAPRLDPRTFSIAEIGSAYDAVLGRNDVPRQRG  329 (343)
T ss_dssp             --CCHHHHHTTCEEEECCTTHHHHHTCSHHHHHHHHHHHHHHHHTTCCCCCBCSCCEETTCHHHHHHHHHTCTTCCCCSS
T ss_pred             --ccchhhhcCcEEEEEEeccchhcccchHHHHHHHHHHHHHHHCCCcccCccCcEecHHHHHHHHHHHHcCCCcccccc
Confidence              223344567777765421          01367899999999999999999 79999999999999998865    57


Q ss_pred             cEEEeC
Q 045248          235 KIIVEP  240 (240)
Q Consensus       235 kvvl~~  240 (240)
                      |+|++.
T Consensus       330 K~v~~~  335 (343)
T 3gaz_A          330 KIAITV  335 (343)
T ss_dssp             BCEEEC
T ss_pred             eEEEEe
Confidence            888763

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=100.00  E-value=2.5e-36  Score=246.31  Aligned_cols=230  Identities=21%  Similarity=0.247  Sum_probs=186.4

Q ss_pred             ceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHH
Q 045248            5 WRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAV   84 (240)
Q Consensus         5 ~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~   84 (240)
                      .++.+...+|+|+||++++++.++++|+++++++||++++.++|||+++.+.+++     ++|++|||+|++|++|++++
T Consensus        88 drV~~~~~~G~~aey~~v~~~~~~~vP~~l~~~~aa~l~~~~~ta~~~~~~~~~~-----~~g~~VlV~Ga~g~iG~~~~  162 (340)
T 3gms_A           88 KRVLPLRGEGTWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNL-----QRNDVLLVNACGSAIGHLFA  162 (340)
T ss_dssp             CEEEECSSSCSSBSEEEEEGGGEEECCTTSCHHHHTTSSHHHHHHHHHHHTTSCC-----CTTCEEEESSTTSHHHHHHH
T ss_pred             CEEEecCCCccceeEEEcCHHHeEECCCCCCHHHHhhhcchHHHHHHHHHHhccc-----CCCCEEEEeCCccHHHHHHH
Confidence            4455566789999999999999999999999999999999999999999888888     89999999998889999999


Q ss_pred             HHHHhCCCEEEEEeC-cccHHHHHhcCCCEEEeCCCCcc--ccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEe
Q 045248           85 QLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPDG--AALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDI  161 (240)
Q Consensus        85 ~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~--~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~  161 (240)
                      |+|+.+|++|+++++ +++++.++++|++.++++.+.+.  ...+.+.+.++|++|||+|++....++++++++|+++.+
T Consensus       163 ~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~  242 (340)
T 3gms_A          163 QLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIGGPDGNELAFSLRPNGHFLTI  242 (340)
T ss_dssp             HHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCHHHHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECCCChhHHHHHHHhcCCCEEEEE
Confidence            999999999999996 58999999999999999877662  234556677999999999987766777999999999999


Q ss_pred             CCCchHHHHHHHhhheeccceeeeEEE---------cCCHHHHHHHHHHHHCCceEE-ecCceecchhHHHHHHHHHcCC
Q 045248          162 TPGPSAMLTFALKKLTFSKKQLVPLLL---------IPKRENLDFLVKLVKEGKLKT-VINSKHPLSKAEDAWAESIDGH  231 (240)
Q Consensus       162 g~~~~~~~~~~~~~~~~~~~~i~~~~~---------~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~a~~~~~~~~  231 (240)
                      |............ .....+++..++.         ....+.++++++++++|++++ .++++|+++++++||+.+.+++
T Consensus       243 G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~i~~~~~l~~~~~A~~~~~~~~  321 (340)
T 3gms_A          243 GLLSGIQVNWAEI-VTKAKVHANIFHLRHWNDEVSPYKWQETFRHLIRLVENEQLRFMKVHSTYELADVKAAVDVVQSAE  321 (340)
T ss_dssp             CCTTSCCCCHHHH-HHTSCCEEEECCHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCCEEEEEEGGGHHHHHHHHHCTT
T ss_pred             eecCCCCCCHHHh-hhcccceEEEEEehhhhhhcCHHHHHHHHHHHHHHHHcCCCccccccEEEeHHHHHHHHHHHHhcC
Confidence            9654321111110 0012222222111         112567899999999999986 5789999999999999999987


Q ss_pred             -CcccEEEeC
Q 045248          232 -ATGKIIVEP  240 (240)
Q Consensus       232 -~~gkvvl~~  240 (240)
                       ..||+|+++
T Consensus       322 ~~~GKvvl~~  331 (340)
T 3gms_A          322 KTKGKVFLTS  331 (340)
T ss_dssp             CCSSEEEEEC
T ss_pred             CCCCeEEEEE
Confidence             459999974

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=100.00  E-value=1.4e-36  Score=249.31  Aligned_cols=226  Identities=17%  Similarity=0.216  Sum_probs=186.1

Q ss_pred             cccceeccc-CCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHH
Q 045248            2 CNLWRIDVS-HNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVG   80 (240)
Q Consensus         2 c~~~~~~~~-~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG   80 (240)
                      |++..+.+. ..+|+|+||++++++.++++|+++++++||++ ..+.|||+++ +..++     ++|++|||+| +|++|
T Consensus       113 C~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~~-~~~~ta~~al-~~~~~-----~~g~~VlV~G-aG~vG  184 (356)
T 1pl8_A          113 SPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALI-EPLSVGIHAC-RRGGV-----TLGHKVLVCG-AGPIG  184 (356)
T ss_dssp             CTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTSCHHHHHHH-HHHHHHHHHH-HHHTC-----CTTCEEEEEC-CSHHH
T ss_pred             CCCccccCcCCCCCccccEEEeehHHEEECcCCCCHHHHHhh-chHHHHHHHH-HhcCC-----CCCCEEEEEC-CCHHH
Confidence            555555554 34799999999999999999999999999876 4667999999 78888     8999999999 69999


Q ss_pred             HHHHHHHHhCCC-EEEEEeCc-ccHHHHHhcCCCEEEeCCC---Cc-cccc-cCCCCCcccEEEeCCCCC-CccccccCC
Q 045248           81 HYAVQLAKLGNT-HVTASCGA-RNIEFVKSLGADEVLDYKT---PD-GAAL-KSPSGRKYDAVIHCATGI-PWSTFEPNL  152 (240)
Q Consensus        81 ~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~~v~~~~~---~~-~~~~-~~~~~~~~d~v~d~~g~~-~~~~~~~~l  152 (240)
                      ++++|+|+.+|+ +|++++++ ++++.++++|++++++++.   .+ ...+ +.+. .++|+|||++|++ .+..+++++
T Consensus       185 ~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~-~g~D~vid~~g~~~~~~~~~~~l  263 (356)
T 1pl8_A          185 MVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLG-CKPEVTIECTGAEASIQAGIYAT  263 (356)
T ss_dssp             HHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHT-SCCSEEEECSCCHHHHHHHHHHS
T ss_pred             HHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhC-CCCCEEEECCCChHHHHHHHHHh
Confidence            999999999999 99999964 7889999999999998872   22 2222 3333 7899999999985 588999999


Q ss_pred             CCCcEEEEeCCCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceE--EecCceecchhHHHHHHHHHcC
Q 045248          153 GTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLK--TVINSKHPLSKAEDAWAESIDG  230 (240)
Q Consensus       153 ~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~a~~~~~~~  230 (240)
                      +++|+++.+|.... ...++...+..+++++.+++.  ..+.++++++++++|+++  ++++++|+++++++||+.+.++
T Consensus       264 ~~~G~iv~~G~~~~-~~~~~~~~~~~~~~~i~g~~~--~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~  340 (356)
T 1pl8_A          264 RSGGTLVLVGLGSE-MTTVPLLHAAIREVDIKGVFR--YCNTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFETFKKG  340 (356)
T ss_dssp             CTTCEEEECSCCCS-CCCCCHHHHHHTTCEEEECCS--CSSCHHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHTT
T ss_pred             cCCCEEEEEecCCC-CCccCHHHHHhcceEEEEecc--cHHHHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHhCC
Confidence            99999999996432 222344556678888888653  256799999999999975  5778899999999999999988


Q ss_pred             CCcccEEEeC
Q 045248          231 HATGKIIVEP  240 (240)
Q Consensus       231 ~~~gkvvl~~  240 (240)
                       ..||+|+++
T Consensus       341 -~~gKvvi~~  349 (356)
T 1pl8_A          341 -LGLKIMLKC  349 (356)
T ss_dssp             -CCSEEEEEC
T ss_pred             -CceEEEEeC
Confidence             789999874

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=100.00  E-value=2.8e-36  Score=245.77  Aligned_cols=223  Identities=19%  Similarity=0.276  Sum_probs=189.0

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhh--hhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEG--SGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLG   90 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~a--a~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~   90 (240)
                      .|+|+||++++++.++++|+++++.++  +++++++.|||+++.+..++     ++|++|||+|++|++|++++|+++..
T Consensus        99 ~G~~aey~~v~~~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~-----~~g~~vlI~Ga~g~iG~~~~~~a~~~  173 (336)
T 4b7c_A           99 ALGVQDYFIGEPKGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQP-----KNGETVVISGAAGAVGSVAGQIARLK  173 (336)
T ss_dssp             ECCSBSEEEECCTTCEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCC-----CTTCEEEESSTTSHHHHHHHHHHHHT
T ss_pred             cCCceEEEEechHHeEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCC-----CCCCEEEEECCCCHHHHHHHHHHHHC
Confidence            489999999999999999999987776  78899999999999888888     89999999998899999999999999


Q ss_pred             CCEEEEEeCc-ccHHHH-HhcCCCEEEeCCCCc-cccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchH
Q 045248           91 NTHVTASCGA-RNIEFV-KSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSA  167 (240)
Q Consensus        91 g~~v~~~~~~-~~~~~~-~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~  167 (240)
                      |++|++++++ ++.+.+ +++|++.++++.+.+ ...+....++++|++||++|++.+..++++++++|+++.+|.....
T Consensus       174 Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~iv~~G~~~~~  253 (336)
T 4b7c_A          174 GCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVGGEILDTVLTRIAFKARIVLCGAISQY  253 (336)
T ss_dssp             TCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEECCCGGGG
T ss_pred             CCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCCcchHHHHHHHHhhCCEEEEEeecccc
Confidence            9999999964 788888 899999999988766 2233222256899999999987789999999999999999965421


Q ss_pred             ------HHHHHHhhheeccceeeeEEEcC----CHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEE
Q 045248          168 ------MLTFALKKLTFSKKQLVPLLLIP----KRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKII  237 (240)
Q Consensus       168 ------~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvv  237 (240)
                            ...++...+..+++++.++....    ..+.++++++++++|++++.+..+++++++++||+.+.+++..||+|
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~gKvv  333 (336)
T 4b7c_A          254 NNKEAVRGPANYLSLLVNRARMEGMVVMDYAQRFPEGLKEMATWLAEGKLQSREDIVEGLETFPETLLKLFSGENFGKLV  333 (336)
T ss_dssp             C------CCTTTTHHHHTTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSCCCEEEEECGGGHHHHHHHHHTTCCCSEEE
T ss_pred             cCCcccccchhHHHHHhCCcEEEEEEhhhhhhhhHHHHHHHHHHHHCCCcccceeeecCHHHHHHHHHHHHcCCCCceEE
Confidence                  11233345667888888876422    14789999999999999987777789999999999999999999999


Q ss_pred             EeC
Q 045248          238 VEP  240 (240)
Q Consensus       238 l~~  240 (240)
                      +++
T Consensus       334 i~~  336 (336)
T 4b7c_A          334 LKV  336 (336)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            975

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=100.00  E-value=2.2e-37  Score=253.50  Aligned_cols=223  Identities=21%  Similarity=0.235  Sum_probs=181.6

Q ss_pred             CCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhC
Q 045248           11 HNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLG   90 (240)
Q Consensus        11 ~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~   90 (240)
                      ..+|+|+||++++++.++++|+++++++||++++.++|||+++ +.++.     ..+++++|+||+|++|++++|+|+.+
T Consensus       115 ~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~-~~~~~-----~g~~~vli~gg~g~vG~~a~qla~~~  188 (349)
T 3pi7_A          115 SNWGSWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIAMF-DIVKQ-----EGEKAFVMTAGASQLCKLIIGLAKEE  188 (349)
T ss_dssp             SSCCSSBSEEEEEGGGEEECCTTCCC--GGGSSHHHHHHHHHH-HHHHH-----HCCSEEEESSTTSHHHHHHHHHHHHH
T ss_pred             CCCccceeeEeechHHeEECCCCCCHHHHhhccccHHHHHHHH-HHHhh-----CCCCEEEEeCCCcHHHHHHHHHHHHC
Confidence            4689999999999999999999999999999999999999777 44443     45589999988999999999999999


Q ss_pred             CCEEEEEeC-cccHHHHHhcCCCEEEeCCCCcc-c-cccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchH
Q 045248           91 NTHVTASCG-ARNIEFVKSLGADEVLDYKTPDG-A-ALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSA  167 (240)
Q Consensus        91 g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~-~-~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~  167 (240)
                      |++|+++++ +++++.++++|++.++++++.+. . ..+.+.+.++|++|||+|++.+..++++++++|+++.+|.....
T Consensus       189 Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~  268 (349)
T 3pi7_A          189 GFRPIVTVRRDEQIALLKDIGAAHVLNEKAPDFEATLREVMKAEQPRIFLDAVTGPLASAIFNAMPKRARWIIYGRLDPD  268 (349)
T ss_dssp             TCEEEEEESCGGGHHHHHHHTCSEEEETTSTTHHHHHHHHHHHHCCCEEEESSCHHHHHHHHHHSCTTCEEEECCCSCCS
T ss_pred             CCEEEEEeCCHHHHHHHHHcCCCEEEECCcHHHHHHHHHHhcCCCCcEEEECCCChhHHHHHhhhcCCCEEEEEeccCCC
Confidence            999999996 58999999999999999877662 2 23445557899999999988788899999999999999964433


Q ss_pred             HHHHHH-hhheeccceeeeEEEcC--------CHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEE
Q 045248          168 MLTFAL-KKLTFSKKQLVPLLLIP--------KRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIV  238 (240)
Q Consensus       168 ~~~~~~-~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl  238 (240)
                      ...++. ..+..+++++.+++...        ..+.++++++++++|+++++++++|+++++++||+.+. +...||+|+
T Consensus       269 ~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~-~~~~gKvvl  347 (349)
T 3pi7_A          269 ATVIREPGQLIFQHKHIEGFWLSEWMRQFKERRGPAILEAQKRFSDGRWSTDVTAVVPLAEAIAWVPAEL-TKPNGKVFI  347 (349)
T ss_dssp             CCCCSCTHHHHHSCCEEEECCHHHHHHHTHHHHHHHHHHC-CTTTTSSCCC-CCEEEEHHHHHHHHHHHH-TSSSSCEEE
T ss_pred             CCCCCchhhhhccccEEEEEEehhhhhhCcHHHHHHHHHHHHHHHcCCcccccceEEcHHHHHHHHHHHh-CCCCceEEE
Confidence            233333 45667888888865311        14678899999999999999999999999999999554 556799999


Q ss_pred             eC
Q 045248          239 EP  240 (240)
Q Consensus       239 ~~  240 (240)
                      +|
T Consensus       348 ~p  349 (349)
T 3pi7_A          348 RP  349 (349)
T ss_dssp             EC
T ss_pred             eC
Confidence            86

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=1.8e-36  Score=247.97  Aligned_cols=228  Identities=20%  Similarity=0.229  Sum_probs=186.2

Q ss_pred             cccceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHH
Q 045248            2 CNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGH   81 (240)
Q Consensus         2 c~~~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~   81 (240)
                      |++....+...+|+|+||++++++.++++|+++++++||+++ .+.|||+++ +..++      +|++|||+|+ |++|+
T Consensus       111 C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~-~~~ta~~~l-~~~~~------~g~~VlV~Ga-G~vG~  181 (348)
T 2d8a_A          111 CQNTKIFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQE-PLGNAVDTV-LAGPI------SGKSVLITGA-GPLGL  181 (348)
T ss_dssp             ---CEETTTSSCCSSBSEEEEEGGGEEECCTTSCHHHHTTHH-HHHHHHHHH-TTSCC------TTCCEEEECC-SHHHH
T ss_pred             CCCCCeecCCCCCcCcceEEeChHHeEECCCCCCHHHHHhhh-HHHHHHHHH-HhcCC------CCCEEEEECC-CHHHH
Confidence            555555566678999999999999999999999999999885 667999999 55543      7899999996 99999


Q ss_pred             HHHHHHHhCCC-EEEEEeCc-ccHHHHHhcCCCEEEeCCCCc-cc-cccCCCCCcccEEEeCCCC-CCccccccCCCCCc
Q 045248           82 YAVQLAKLGNT-HVTASCGA-RNIEFVKSLGADEVLDYKTPD-GA-ALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNG  156 (240)
Q Consensus        82 ~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~-~~-~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G  156 (240)
                      +++|+|+.+|+ +|++++++ ++++.++++|++.++++++.+ .. ..+.+.+.++|++||++|. ..+..++++++++|
T Consensus       182 ~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G  261 (348)
T 2d8a_A          182 LGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGAPKALEQGLQAVTPAG  261 (348)
T ss_dssp             HHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCCHHHHHHHHHHEEEEE
T ss_pred             HHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHHhcCC
Confidence            99999999999 99999965 788999999999999887655 22 2344566789999999998 56889999999999


Q ss_pred             EEEEeCCCchHHHHHHH-hhheeccceeeeEEEcCCHHHHHHHHHHHHCCce--EEecCceec-chhHHHHHHHHHcCCC
Q 045248          157 KVIDITPGPSAMLTFAL-KKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKL--KTVINSKHP-LSKAEDAWAESIDGHA  232 (240)
Q Consensus       157 ~iv~~g~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~-~~~~~~a~~~~~~~~~  232 (240)
                      +++.+|.... ...++. ..+..+++++.+++.....+.++++++++++|++  +++++++|+ ++++++||+.+.+ ..
T Consensus       262 ~iv~~g~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~-~~  339 (348)
T 2d8a_A          262 RVSLLGLYPG-KVTIDFNNLIIFKALTIYGITGRHLWETWYTVSRLLQSGKLNLDPIITHKYKGFDKYEEAFELMRA-GK  339 (348)
T ss_dssp             EEEECCCCSS-CCCCCHHHHTTTTTCEEEECCCCCSHHHHHHHHHHHHHTCCCCTTTEEEEEESSTTHHHHHHHHHT-TC
T ss_pred             EEEEEccCCC-CcccCchHHHHhCCcEEEEecCCCcHHHHHHHHHHHHcCCCChHHhheeeCCCHHHHHHHHHHHhC-CC
Confidence            9999986543 222334 4566788888886542227889999999999995  467788999 9999999999977 56


Q ss_pred             cccEEEeC
Q 045248          233 TGKIIVEP  240 (240)
Q Consensus       233 ~gkvvl~~  240 (240)
                      .||+|+++
T Consensus       340 ~gKvvi~~  347 (348)
T 2d8a_A          340 TGKVVFML  347 (348)
T ss_dssp             CSEEEEEC
T ss_pred             ceEEEEee
Confidence            78999875

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=100.00  E-value=1.4e-36  Score=249.01  Aligned_cols=224  Identities=16%  Similarity=0.181  Sum_probs=187.3

Q ss_pred             cCCCcccceEEEecCC--ceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHH
Q 045248           10 SHNGGGLAEFAVAKES--STVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLA   87 (240)
Q Consensus        10 ~~~~G~~~e~~~v~~~--~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a   87 (240)
                      ...+|+|+||+++++.  .++++|++++++++|+++..+.|||+++ +..++     ++|++|||+| +|++|++++|+|
T Consensus       114 ~~~~G~~aey~~v~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~al-~~~~~-----~~g~~VlV~G-aG~vG~~a~qla  186 (352)
T 3fpc_A          114 NVKDGVFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGA-ELANI-----KLGDTVCVIG-IGPVGLMSVAGA  186 (352)
T ss_dssp             TTBCCSSBSCEEESSHHHHCEECCTTSCHHHHTTTTTHHHHHHHHH-HHTTC-----CTTCCEEEEC-CSHHHHHHHHHH
T ss_pred             cCCCCcccceEEeccccCeEEECCCCCCHHHHhhccchhHHHHHHH-HhcCC-----CCCCEEEEEC-CCHHHHHHHHHH
Confidence            3468999999999986  8999999999999999999999999999 78888     8999999999 699999999999


Q ss_pred             HhCCC-EEEEEeCc-ccHHHHHhcCCCEEEeCCCCc--cccccCCCCCcccEEEeCCCCC-CccccccCCCCCcEEEEeC
Q 045248           88 KLGNT-HVTASCGA-RNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus        88 ~~~g~-~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~g  162 (240)
                      +.+|+ +|++++++ ++++.++++|+++++++++.+  ....+.+.+.++|++||++|++ .+..++++++++|+++.+|
T Consensus       187 ~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~~g~~~~~~~~~~~l~~~G~~v~~G  266 (352)
T 3fpc_A          187 NHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVN  266 (352)
T ss_dssp             HTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEECSSCTTHHHHHHHHEEEEEEEEECC
T ss_pred             HHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEec
Confidence            99999 89999975 789999999999999987766  2334566778999999999984 5999999999999999999


Q ss_pred             CCchH-HHHHH--HhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEE--ecCceec-chhHHHHHHHHHcCCC-ccc
Q 045248          163 PGPSA-MLTFA--LKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKT--VINSKHP-LSKAEDAWAESIDGHA-TGK  235 (240)
Q Consensus       163 ~~~~~-~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~-~~~~~~a~~~~~~~~~-~gk  235 (240)
                      ..... ...+.  .....+++.++.+++.....+.++++++++++|++++  +++++|+ |+++++||+.+.+++. .+|
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~~~~~~~K  346 (352)
T 3fpc_A          267 YLGEGDNIDIPRSEWGVGMGHKHIHGGLCPGGRLRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIK  346 (352)
T ss_dssp             CCCSCSEEEEETTTTGGGTBCEEEEEBCCCCHHHHHHHHHHHHHTTSCCGGGGEEEEEESTTHHHHHHHHHHSCCTTCSE
T ss_pred             ccCCCCceecchhHhhhhccccEEEEeeccCchhHHHHHHHHHHcCCCChhHhheeeCCCHHHHHHHHHHHHhCCCCcEE
Confidence            65321 11111  1123356777887654344778999999999999985  5789999 9999999999998664 489


Q ss_pred             EEEeC
Q 045248          236 IIVEP  240 (240)
Q Consensus       236 vvl~~  240 (240)
                      +|+++
T Consensus       347 vvi~~  351 (352)
T 3fpc_A          347 PVVIL  351 (352)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99975

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=100.00  E-value=5.5e-37  Score=250.60  Aligned_cols=227  Identities=22%  Similarity=0.300  Sum_probs=173.2

Q ss_pred             cccceecccCCCcccceEEEec-CCceeeCCCCCChhhhhhhchHHHHHHHHHHhhh----CCCcCCCCCCCeEEEEcCC
Q 045248            2 CNLWRIDVSHNGGGLAEFAVAK-ESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSA----GVKLDGSGQQKNILVTAAS   76 (240)
Q Consensus         2 c~~~~~~~~~~~G~~~e~~~v~-~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~----~~~~~~~~~g~~vlV~G~~   76 (240)
                      |++....|...+|+|+||++++ ++.++++ ++++++++|++++++.|||+++....    ++      +|++|||+|+ 
T Consensus       108 C~~~~~~G~~~~G~~aey~~v~~~~~~~~i-~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~------~g~~VlV~Ga-  179 (344)
T 2h6e_A          108 CKNQIIPGQTTNGGFSEYMLVKSSRWLVKL-NSLSPVEAAPLADAGTTSMGAIRQALPFISKF------AEPVVIVNGI-  179 (344)
T ss_dssp             CTTCBCBTTTBCCSSBSEEEESCGGGEEEE-SSSCHHHHGGGGTHHHHHHHHHHHHHHHHTTC------SSCEEEEECC-
T ss_pred             CCCccccccccCCcceeeEEecCcccEEEe-CCCCHHHhhhhhhhhHHHHHHHHhhhhcccCC------CCCEEEEECC-
Confidence            4444445556789999999999 9999999 99999999999999999999995441    33      7899999996 


Q ss_pred             chHHHHHHHHHHhC--CCEEEEEeC-cccHHHHHhcCCCEEEeCCC-CccccccCCCCCcccEEEeCCCCC-CccccccC
Q 045248           77 GGVGHYAVQLAKLG--NTHVTASCG-ARNIEFVKSLGADEVLDYKT-PDGAALKSPSGRKYDAVIHCATGI-PWSTFEPN  151 (240)
Q Consensus        77 g~vG~~~~~~a~~~--g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~-~~~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~  151 (240)
                      |++|++++|+|+.+  |++|+++++ +++++.++++|+++++++.+ .+. ..+.+.+.++|+|||++|.+ .+..++++
T Consensus       180 G~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~-~~~~~~g~g~D~vid~~g~~~~~~~~~~~  258 (344)
T 2h6e_A          180 GGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESL-INKLTDGLGASIAIDLVGTEETTYNLGKL  258 (344)
T ss_dssp             SHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHH-HHHHHTTCCEEEEEESSCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHH-HHHhhcCCCccEEEECCCChHHHHHHHHH
Confidence            99999999999999  999999996 48899999999999998764 321 11222356899999999987 68999999


Q ss_pred             CCCCcEEEEeCCCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCC
Q 045248          152 LGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGH  231 (240)
Q Consensus       152 l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~  231 (240)
                      ++++|+++.+|..... ..++...+..+++++.+++. ...+.++++++++++|++++.+ ++|+++++++||+.+.+++
T Consensus       259 l~~~G~iv~~g~~~~~-~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~l~~~g~i~~~i-~~~~l~~~~~A~~~~~~~~  335 (344)
T 2h6e_A          259 LAQEGAIILVGMEGKR-VSLEAFDTAVWNKKLLGSNY-GSLNDLEDVVRLSESGKIKPYI-IKVPLDDINKAFTNLDEGR  335 (344)
T ss_dssp             EEEEEEEEECCCCSSC-CCCCHHHHHHTTCEEEECCS-CCHHHHHHHHHHHHTTSSCCCE-EEECC--------------
T ss_pred             hhcCCEEEEeCCCCCC-cccCHHHHhhCCcEEEEEec-CCHHHHHHHHHHHHcCCCCcce-EEEeHHHHHHHHHHHHcCC
Confidence            9999999999865422 22333445677888888653 5688999999999999999888 9999999999999999888


Q ss_pred             CcccEEEeC
Q 045248          232 ATGKIIVEP  240 (240)
Q Consensus       232 ~~gkvvl~~  240 (240)
                      ..||+|+++
T Consensus       336 ~~gKvvl~~  344 (344)
T 2h6e_A          336 VDGRQVITP  344 (344)
T ss_dssp             --CEEEECC
T ss_pred             CceEEEEeC
Confidence            889999875

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=7e-36  Score=246.86  Aligned_cols=218  Identities=15%  Similarity=0.143  Sum_probs=181.3

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      .|+|+||++++++.++++|++++++++|++++++.|||+++.+..++     ++|++|||+| +|++|++++|+|+.+|+
T Consensus       147 ~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~-----~~g~~VlV~G-aG~vG~~aiqlak~~Ga  220 (376)
T 1e3i_A          147 VSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGYGAAINTAKV-----TPGSTCAVFG-LGCVGLSAIIGCKIAGA  220 (376)
T ss_dssp             TCCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTSCC-----CTTCEEEEEC-CSHHHHHHHHHHHHTTC
T ss_pred             CccceeEEEeccccEEECCCCCCHHHhhhhccHHHHHHHHHHHhcCC-----CCCCEEEEEC-CCHHHHHHHHHHHHcCC
Confidence            59999999999999999999999999999999999999998788888     8999999999 69999999999999999


Q ss_pred             -EEEEEeC-cccHHHHHhcCCCEEEeCCC--Cc-cccc-cCCCCCcccEEEeCCCC-CCccccccCCCCC-cEEEEeCCC
Q 045248           93 -HVTASCG-ARNIEFVKSLGADEVLDYKT--PD-GAAL-KSPSGRKYDAVIHCATG-IPWSTFEPNLGTN-GKVIDITPG  164 (240)
Q Consensus        93 -~v~~~~~-~~~~~~~~~~g~~~v~~~~~--~~-~~~~-~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~-G~iv~~g~~  164 (240)
                       +|+++++ +++++.++++|+++++++.+  .+ ...+ +.+.+ ++|+|||++|. ..+..++++++++ |+++.+|..
T Consensus       221 ~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~-g~Dvvid~~G~~~~~~~~~~~l~~~~G~iv~~G~~  299 (376)
T 1e3i_A          221 SRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAG-GVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAK  299 (376)
T ss_dssp             SEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTS-CBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCS
T ss_pred             CeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCC-CccEEEECCCCHHHHHHHHHHhhcCCCEEEEECCC
Confidence             8999985 58999999999999998774  23 2223 33344 89999999998 5588999999999 999999973


Q ss_pred             chHHHHHHHhhheeccceeeeEEEc--CCHHHHHHHHHHHHCCceE--EecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          165 PSAMLTFALKKLTFSKKQLVPLLLI--PKRENLDFLVKLVKEGKLK--TVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      .. ...++...+..++ ++.+++..  ...+.++++++++++|+++  ++++++|+|+++++||+.+.+++ .+|+|+++
T Consensus       300 ~~-~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~-~~Kvvi~~  376 (376)
T 1e3i_A          300 VD-EMTIPTVDVILGR-SINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAIDLMKEGK-SIRTILTF  376 (376)
T ss_dssp             SS-EEEEEHHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCGGGGEEEEEEGGGHHHHHHHHHTTC-CSEEEEEC
T ss_pred             CC-ccccCHHHhhccC-eEEEEecCCCCcHHHHHHHHHHHHcCCCCcHHhEeeeecHHHHHHHHHHHhcCC-cceEEEeC
Confidence            22 1222333344556 77776431  1357899999999999987  57789999999999999998877 57999875

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=100.00  E-value=3.5e-37  Score=250.49  Aligned_cols=225  Identities=22%  Similarity=0.317  Sum_probs=182.4

Q ss_pred             CCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHH--hhhCCCcCCCCCCC-eEEEEcCCchHHHHHHHHH
Q 045248           11 HNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALT--QSAGVKLDGSGQQK-NILVTAASGGVGHYAVQLA   87 (240)
Q Consensus        11 ~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~--~~~~~~~~~~~~g~-~vlV~G~~g~vG~~~~~~a   87 (240)
                      ..+|+|+||++++++.++++|++++++++|++++++.|||.++.  ...++     ++|+ +|||+|++|++|++++|+|
T Consensus        97 ~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~-----~~g~~~VlV~Ga~G~vG~~~~q~a  171 (330)
T 1tt7_A           97 SRDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGL-----SPEKGSVLVTGATGGVGGIAVSML  171 (330)
T ss_dssp             TBCCSSBSSEEECGGGEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTC-----CGGGCCEEEESTTSHHHHHHHHHH
T ss_pred             CCCccceeEEEecHHHeEECCCCCCHHHHhhccchHHHHHHHHHHHHhcCc-----CCCCceEEEECCCCHHHHHHHHHH
Confidence            35799999999999999999999999999999999999998875  34566     7886 9999998899999999999


Q ss_pred             HhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCch
Q 045248           88 KLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPS  166 (240)
Q Consensus        88 ~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~  166 (240)
                      +.+|++|++++++ ++++.++++|++.++++++.+...++...+.++|++||++|++.+..++++++++|+++.+|....
T Consensus       172 ~~~Ga~vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~  251 (330)
T 1tt7_A          172 NKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGG  251 (330)
T ss_dssp             HHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCCTHHHHHHHTTEEEEEEEEECCCSSC
T ss_pred             HHCCCEEEEEeCCHHHHHHHHHcCCcEEEECCCchHHHHHHhhcCCccEEEECCcHHHHHHHHHhhcCCCEEEEEecCCC
Confidence            9999999999964 899999999999999865432122333345689999999999778999999999999999986543


Q ss_pred             HHHHHHHhhheeccceeeeEEE-cCC----HHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          167 AMLTFALKKLTFSKKQLVPLLL-IPK----RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       167 ~~~~~~~~~~~~~~~~i~~~~~-~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      ....++...+..+++++.++.. ...    .+.++++.+++++|++++.++++|+++++++||+.+.+++..||+|+++
T Consensus       252 ~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~  330 (330)
T 1tt7_A          252 GEVPATVYPFILRGVSLLGIDSVYCPMDVRAAVWERMSSDLKPDQLLTIVDREVSLEETPGALKDILQNRIQGRVIVKL  330 (330)
T ss_dssp             SCEEECSHHHHTSCCEEEECCSSSCCHHHHHHHHHHTTTTSCCSCSTTSEEEEECSTTHHHHHHHTTTTCCSSEEEECC
T ss_pred             CccCcchHHHHhcCeEEEEEeccccCHHHHHHHHHHHHHHHhcCCcccccceEEcHHHHHHHHHHHHcCCCCCeEEEeC
Confidence            2112222334567778877632 112    2456777778888999888889999999999999999888889999875

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.9e-36  Score=244.75  Aligned_cols=224  Identities=21%  Similarity=0.248  Sum_probs=184.5

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g   91 (240)
                      .+|+|+||++++++.++++|++++++++|+++.++.|||+++.+..++     +++++|||+||+|++|++++|+++..|
T Consensus        91 ~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~-----~~g~~vlV~Ga~ggiG~~~~~~a~~~G  165 (327)
T 1qor_A           91 ALGAYSSVHNIIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEI-----KPDEQFLFHAAAGGVGLIACQWAKALG  165 (327)
T ss_dssp             SSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCC-----CTTCEEEESSTTBHHHHHHHHHHHHHT
T ss_pred             CCceeeeEEEecHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhCC-----CCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence            469999999999999999999999999999999999999999778888     899999999999999999999999999


Q ss_pred             CEEEEEeCc-ccHHHHHhcCCCEEEeCCCCcc--ccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchHH
Q 045248           92 THVTASCGA-RNIEFVKSLGADEVLDYKTPDG--AALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAM  168 (240)
Q Consensus        92 ~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~--~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~  168 (240)
                      ++|++++++ ++.+.++++|++.++++.+.+.  ...+.+.+.++|++||++|.+.+..++++++++|+++.+|......
T Consensus       166 ~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~  245 (327)
T 1qor_A          166 AKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMVSFGNSSGAV  245 (327)
T ss_dssp             CEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSCGGGHHHHHHTEEEEEEEEECCCTTCCC
T ss_pred             CEEEEEeCCHHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCceEEEECCchHHHHHHHHHhcCCCEEEEEecCCCCC
Confidence            999999975 7888999999999998876552  2233445568999999999777999999999999999998643211


Q ss_pred             HHHHHhhheec-cceeeeEEE---cC----CHHHHHHHHHHHHCCceEEecC--ceecchhHHHHHHHHHcCCCcccEEE
Q 045248          169 LTFALKKLTFS-KKQLVPLLL---IP----KRENLDFLVKLVKEGKLKTVIN--SKHPLSKAEDAWAESIDGHATGKIIV  238 (240)
Q Consensus       169 ~~~~~~~~~~~-~~~i~~~~~---~~----~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~a~~~~~~~~~~gkvvl  238 (240)
                      ..++...+..+ +.++.+...   ..    ..+.++++++++++|++++.++  ++|+++++++||+.+.+++..||+|+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~~~l~~~~~A~~~~~~~~~~gKvvl  325 (327)
T 1qor_A          246 TGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFSLIASGVIKVDVAEQQKYPLKDAQRAHEILESRATQGSSLL  325 (327)
T ss_dssp             CCBCTHHHHHTTSCEEECCCHHHHCCSHHHHHHHHHHHHHHHHTTSSCCCCCGGGEEEGGGHHHHHHHHHTTCCCBCCEE
T ss_pred             CccCHHHHhhccceEEEccchhhhcCCHHHHHHHHHHHHHHHHCCCcccccccCcEEcHHHHHHHHHHHHhCCCCceEEE
Confidence            11222223333 444443211   01    2456899999999999999999  99999999999999999888899998


Q ss_pred             eC
Q 045248          239 EP  240 (240)
Q Consensus       239 ~~  240 (240)
                      ++
T Consensus       326 ~~  327 (327)
T 1qor_A          326 IP  327 (327)
T ss_dssp             EC
T ss_pred             eC
Confidence            75

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.3e-36  Score=248.41  Aligned_cols=219  Identities=21%  Similarity=0.226  Sum_probs=183.9

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      +|+|+||++++++.++++|++++++++|++++++.|||+++.+..++     ++|++|||+| +|++|++++|+|+.+|+
T Consensus       142 ~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~-----~~g~~VlV~G-aG~vG~~a~qlak~~Ga  215 (371)
T 1f8f_A          142 QSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINALKV-----TPASSFVTWG-AGAVGLSALLAAKVCGA  215 (371)
T ss_dssp             TCCSBSEEEEEGGGEEEECTTSCGGGTGGGGTHHHHHHHHHHTTTCC-----CTTCEEEEES-CSHHHHHHHHHHHHHTC
T ss_pred             CccccCeEEechhheEECCCCCCHHHHHHhcchHHHHHHHHHhccCC-----CCCCEEEEEC-CCHHHHHHHHHHHHcCC
Confidence            59999999999999999999999999999999999999999778888     8999999999 69999999999999999


Q ss_pred             -EEEEEeC-cccHHHHHhcCCCEEEeCCCCc-cccc-cCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEeCCCch-
Q 045248           93 -HVTASCG-ARNIEFVKSLGADEVLDYKTPD-GAAL-KSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITPGPS-  166 (240)
Q Consensus        93 -~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~-~~~~-~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~~~~-  166 (240)
                       +|+++++ +++++.++++|++.++++.+.+ ...+ +.+.+ ++|+|||++|. ..+..++++++++|+++.+|.... 
T Consensus       216 ~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~g-g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~  294 (371)
T 1f8f_A          216 SIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDG-GVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLG  294 (371)
T ss_dssp             SEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTS-CEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTT
T ss_pred             CeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCC-CCcEEEECCCCHHHHHHHHHHHhcCCEEEEeCCCCCC
Confidence             7999985 4889999999999999987765 2233 33444 89999999998 458899999999999999996542 


Q ss_pred             HHHHHHHhhheeccceeeeEEEcC--CHHHHHHHHHHHHCCceEE--ecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          167 AMLTFALKKLTFSKKQLVPLLLIP--KRENLDFLVKLVKEGKLKT--VINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       167 ~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      ....++...+..+++++.+++...  ..+.++++++++++|++++  ++++ |+++++++||+.+.+++. +|+|+++
T Consensus       295 ~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~-~~l~~~~~A~~~~~~~~~-~Kvvv~~  370 (371)
T 1f8f_A          295 TTAQFDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGKFPFDQLVKF-YAFDEINQAAIDSRKGIT-LKPIIKI  370 (371)
T ss_dssp             CCCCCCHHHHHHTTCEEEECSGGGSCHHHHHHHHHHHHHTTSCCGGGGEEE-EEGGGHHHHHHHHHHTSC-SEEEEEC
T ss_pred             CccccCHHHHHhCCCEEEEeCCCCCchHHHHHHHHHHHHcCCCCcccceeE-ecHHHHHHHHHHHHCCCc-eEEEEee
Confidence            122233444556788888865321  2467999999999999874  5777 999999999999988775 7999875

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.3e-36  Score=244.58  Aligned_cols=223  Identities=22%  Similarity=0.286  Sum_probs=176.5

Q ss_pred             CCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHH--hhhCCCcCCCCCCC-eEEEEcCCchHHHHHHHHH
Q 045248           11 HNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALT--QSAGVKLDGSGQQK-NILVTAASGGVGHYAVQLA   87 (240)
Q Consensus        11 ~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~--~~~~~~~~~~~~g~-~vlV~G~~g~vG~~~~~~a   87 (240)
                      ..+|+|+||++++++.++++|+++++++||++++++.|||.++.  ...++     ++++ +|||+|++|++|++++|+|
T Consensus        96 ~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~-----~~g~~~VlV~Ga~G~vG~~~~q~a  170 (328)
T 1xa0_A           96 THFGGYSEYARLHGEWLVPLPKGLTLKEAMAIGTAGFTAALSIHRLEEHGL-----TPERGPVLVTGATGGVGSLAVSML  170 (328)
T ss_dssp             TBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTC-----CGGGCCEEESSTTSHHHHHHHHHH
T ss_pred             CCCccceeEEEechHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHHhhcCC-----CCCCceEEEecCCCHHHHHHHHHH
Confidence            35799999999999999999999999999999999999998874  34566     7886 9999998899999999999


Q ss_pred             HhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCch
Q 045248           88 KLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPS  166 (240)
Q Consensus        88 ~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~  166 (240)
                      +.+|++|++++++ ++++.++++|++.++++.+.+...++...+.++|++||++|++.+..++++++++|+++.+|....
T Consensus       171 ~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~G~~~~  250 (328)
T 1xa0_A          171 AKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGGRTLATVLSRMRYGGAVAVSGLTGG  250 (328)
T ss_dssp             HHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTTTTHHHHHHTEEEEEEEEECSCCSS
T ss_pred             HHCCCEEEEEECCHHHHHHHHHcCCcEEEecCCcHHHHHHHhcCCcccEEEECCcHHHHHHHHHhhccCCEEEEEeecCC
Confidence            9999999999964 899999999999999876543222333345689999999999889999999999999999986543


Q ss_pred             HHHHHHHhhheeccceeeeEEE-cCC----HHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          167 AMLTFALKKLTFSKKQLVPLLL-IPK----RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       167 ~~~~~~~~~~~~~~~~i~~~~~-~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      ....++...+..+++++.++.. ...    .+.++.+.++++++ +++ ++++|+++++++||+.+.+++..||+|+++
T Consensus       251 ~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~g-l~~-~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  327 (328)
T 1xa0_A          251 AEVPTTVHPFILRGVSLLGIDSVYCPMDLRLRIWERLAGDLKPD-LER-IAQEISLAELPQALKRILRGELRGRTVVRL  327 (328)
T ss_dssp             SCCCCCSHHHHHTTCEEEECCSSSCCHHHHHHHHHHHHTTTCCC-HHH-HEEEEEGGGHHHHHHHHHHTCCCSEEEEEC
T ss_pred             CCCCCchhhhhhcCceEEEEecccCCHHHHHHHHHHHHHHHHcC-Cce-eeeEeCHHHHHHHHHHHHcCCCCCeEEEEe
Confidence            2222222334567777777532 112    24567777777777 765 468999999999999999988889999875

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=5.6e-36  Score=247.54  Aligned_cols=219  Identities=15%  Similarity=0.152  Sum_probs=181.3

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      .|+|+||++++++.++++|++++++++|++++++.|||+++.+..++     ++|++|||+| +|++|++++|+|+.+|+
T Consensus       145 ~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~-----~~g~~VlV~G-aG~vG~~a~q~a~~~Ga  218 (378)
T 3uko_A          145 TSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPTGLGAVWNTAKV-----EPGSNVAIFG-LGTVGLAVAEGAKTAGA  218 (378)
T ss_dssp             TCCSBSEEEEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHTTTCC-----CTTCCEEEEC-CSHHHHHHHHHHHHHTC
T ss_pred             CcceEeEEEechhheEECCCCCCHHHhhhhhhhHHHHHHHHHhhcCC-----CCCCEEEEEC-CCHHHHHHHHHHHHcCC
Confidence            47999999999999999999999999999999999999998888888     8999999999 59999999999999999


Q ss_pred             -EEEEEeC-cccHHHHHhcCCCEEEeCCC--Cc-cccc-cCCCCCcccEEEeCCCC-CCccccccCCCCC-cEEEEeCCC
Q 045248           93 -HVTASCG-ARNIEFVKSLGADEVLDYKT--PD-GAAL-KSPSGRKYDAVIHCATG-IPWSTFEPNLGTN-GKVIDITPG  164 (240)
Q Consensus        93 -~v~~~~~-~~~~~~~~~~g~~~v~~~~~--~~-~~~~-~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~-G~iv~~g~~  164 (240)
                       +|+++++ +++++.++++|+++++++.+  .+ ...+ +.+.+ ++|+|||++|+ ..+..++++++++ |+++.+|..
T Consensus       219 ~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~g-g~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~  297 (378)
T 3uko_A          219 SRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA  297 (378)
T ss_dssp             SCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTS-CBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCC
T ss_pred             CeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCC-CCCEEEECCCCHHHHHHHHHHhhccCCEEEEEccc
Confidence             8999995 58999999999999999873  33 2233 34445 99999999998 4589999999996 999999964


Q ss_pred             ch-HHHHHHHhhheeccceeeeEEEc--CCHHHHHHHHHHHHCCceE--EecCceecchhHHHHHHHHHcCCCcccEEEe
Q 045248          165 PS-AMLTFALKKLTFSKKQLVPLLLI--PKRENLDFLVKLVKEGKLK--TVINSKHPLSKAEDAWAESIDGHATGKIIVE  239 (240)
Q Consensus       165 ~~-~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~  239 (240)
                      .. ....+....+ +++.++.+++..  ...+.++++++++++|+++  ++++++|+|+++++||+.+.+++.. |+|++
T Consensus       298 ~~~~~~~~~~~~~-~~~~~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~g~~~-Kvvi~  375 (378)
T 3uko_A          298 ASGQEISTRPFQL-VTGRVWKGTAFGGFKSRTQVPWLVEKYMNKEIKVDEYITHNLTLGEINKAFDLLHEGTCL-RCVLD  375 (378)
T ss_dssp             CTTCCEEECTHHH-HTTCEEEECSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHTTCTTCS-EEEEE
T ss_pred             CCCCccccCHHHH-hcCcEEEEEEecCCCchHHHHHHHHHHHcCCCChhHheeeEeeHHHHHHHHHHHHCCCce-EEEEe
Confidence            32 1111112222 236677776532  2467899999999999987  4688999999999999999988865 99987


Q ss_pred             C
Q 045248          240 P  240 (240)
Q Consensus       240 ~  240 (240)
                      +
T Consensus       376 ~  376 (378)
T 3uko_A          376 T  376 (378)
T ss_dssp             T
T ss_pred             c
Confidence            5

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=100.00  E-value=2.2e-36  Score=251.90  Aligned_cols=227  Identities=17%  Similarity=0.204  Sum_probs=187.9

Q ss_pred             CcccceecccCCCcccceEEEecCCceeeCCCCCC------hhhhhhhchHHHHHHHHHHhhh-CCCcCCCCCCCeEEEE
Q 045248            1 MCNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVS------AAEGSGLPVAGLTAHQALTQSA-GVKLDGSGQQKNILVT   73 (240)
Q Consensus         1 ~c~~~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~------~~~aa~~~~~~~ta~~~l~~~~-~~~~~~~~~g~~vlV~   73 (240)
                      +|.+....+...+|+|+||++++++.++++|++++      +.++|+++..+.|||+++.... ++     ++|++|||+
T Consensus       146 ~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~-----~~g~~VlV~  220 (404)
T 3ip1_A          146 HCENLNELGFNVDGAFAEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGI-----RPGDNVVIL  220 (404)
T ss_dssp             GCTTCEEBTTTBCCSSBSEEEEEGGGEEECGGGBTTBCTHHHHHHHHTHHHHHHHHHHHTTTSCCC-----CTTCEEEEE
T ss_pred             cCccccccCCCCCCCCcceEEechHHeEeccccccccccccchhHHhhhhHHHHHHHHHHHhccCC-----CCCCEEEEE
Confidence            36677777777899999999999999999999886      4568888889999999996553 77     899999999


Q ss_pred             cCCchHHHHHHHHHHhCCC-EEEEEeC-cccHHHHHhcCCCEEEeCCCCc--cccccCCCCCcccEEEeCCCCC--Cccc
Q 045248           74 AASGGVGHYAVQLAKLGNT-HVTASCG-ARNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCATGI--PWST  147 (240)
Q Consensus        74 G~~g~vG~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~--~~~~  147 (240)
                      |+ |++|++++|+|+.+|+ +|+++++ ++++++++++|++.++++.+.+  ....+.+.+.++|+|||++|++  .+..
T Consensus       221 Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g~~~~~~~~  299 (404)
T 3ip1_A          221 GG-GPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGVPQLVWPQ  299 (404)
T ss_dssp             CC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSSCHHHHHHH
T ss_pred             CC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCCCcHHHHHH
Confidence            95 9999999999999999 9999985 5899999999999999987766  2334556778999999999987  4566


Q ss_pred             cccCC----CCCcEEEEeCCCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceE--EecCceecchhHH
Q 045248          148 FEPNL----GTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLK--TVINSKHPLSKAE  221 (240)
Q Consensus       148 ~~~~l----~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~  221 (240)
                      +++++    +++|+++.+|..... ..++...+..+++++.+++.....+.++++++++++| ++  ++++++|+|++++
T Consensus       300 ~~~~l~~~~~~~G~iv~~G~~~~~-~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~ll~~g-l~~~~~i~~~~~l~~~~  377 (404)
T 3ip1_A          300 IEEVIWRARGINATVAIVARADAK-IPLTGEVFQVRRAQIVGSQGHSGHGTFPRVISLMASG-MDMTKIISKTVSMEEIP  377 (404)
T ss_dssp             HHHHHHHCSCCCCEEEECSCCCSC-EEECHHHHHHTTCEEEECCCCCSTTHHHHHHHHHHTT-CCGGGGCCEEECGGGHH
T ss_pred             HHHHHHhccCCCcEEEEeCCCCCC-CcccHHHHhccceEEEEecCCCchHHHHHHHHHHHcC-CChhheEEEEeeHHHHH
Confidence            66666    999999999975432 2344556677888888876433477899999999999 65  5788999999999


Q ss_pred             HHHHHHHcCCCcccEEEe
Q 045248          222 DAWAESIDGHATGKIIVE  239 (240)
Q Consensus       222 ~a~~~~~~~~~~gkvvl~  239 (240)
                      +||+.+.    .||+|++
T Consensus       378 ~A~~~~~----~GKvvl~  391 (404)
T 3ip1_A          378 EYIKRLQ----TDKSLVK  391 (404)
T ss_dssp             HHHHHTT----TCTTCSC
T ss_pred             HHHHHHh----CCcEEEe
Confidence            9999887    5677764

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.4e-35  Score=244.91  Aligned_cols=219  Identities=15%  Similarity=0.105  Sum_probs=180.9

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      +|+|+||++++++.++++|+++++++||++++++.|||+++.+..++     ++|++|||+| +|++|++++|+|+.+|+
T Consensus       144 ~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~-----~~g~~VlV~G-aG~vG~~a~qla~~~Ga  217 (374)
T 1cdo_A          144 TSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKV-----EPGSTCAVFG-LGAVGLAAVMGCHSAGA  217 (374)
T ss_dssp             TCCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTTCC-----CTTCEEEEEC-CSHHHHHHHHHHHHTTC
T ss_pred             CccceeEEEEchhheEECCCCCCHHHHhhhccHHHHHHHHHHhccCC-----CCCCEEEEEC-CCHHHHHHHHHHHHcCC
Confidence            59999999999999999999999999999999999999998778888     8999999999 69999999999999999


Q ss_pred             -EEEEEeC-cccHHHHHhcCCCEEEeCCC--Cc-cccc-cCCCCCcccEEEeCCCC-CCccccccCCCCC-cEEEEeCCC
Q 045248           93 -HVTASCG-ARNIEFVKSLGADEVLDYKT--PD-GAAL-KSPSGRKYDAVIHCATG-IPWSTFEPNLGTN-GKVIDITPG  164 (240)
Q Consensus        93 -~v~~~~~-~~~~~~~~~~g~~~v~~~~~--~~-~~~~-~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~-G~iv~~g~~  164 (240)
                       +|+++++ +++++.++++|++.++++.+  .+ ...+ +.+. .++|++||++|. ..+..++++++++ |+++.+|..
T Consensus       218 ~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~-~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~  296 (374)
T 1cdo_A          218 KRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTN-GGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWT  296 (374)
T ss_dssp             SEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHT-SCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCC
T ss_pred             CEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhC-CCCCEEEECCCCHHHHHHHHHHhhcCCcEEEEEcCC
Confidence             8999985 58999999999999998764  22 2222 2333 389999999998 5688999999999 999999965


Q ss_pred             chHHHHHHHhhheeccceeeeEEEc--CCHHHHHHHHHHHHCCceE--EecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          165 PSAMLTFALKKLTFSKKQLVPLLLI--PKRENLDFLVKLVKEGKLK--TVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      ......++...+..++ ++.+++..  ...+.++++++++++|+++  ++++++|+|+++++||+.+.+++. +|+|+++
T Consensus       297 ~~~~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvi~~  374 (374)
T 1cdo_A          297 DLHDVATRPIQLIAGR-TWKGSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDAIDLMKHGKC-IRTVLSL  374 (374)
T ss_dssp             SSSCEEECHHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCC-SEEEEEC
T ss_pred             CCCCcccCHHHHhcCC-eEEEEecCCCCcHHHHHHHHHHHHcCCCChHHheeeEecHHHHHHHHHHHHCCCe-eEEEEeC
Confidence            4211112222344455 77776431  1357899999999999987  467899999999999999988874 6999875

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=100.00  E-value=1.8e-36  Score=247.42  Aligned_cols=228  Identities=18%  Similarity=0.239  Sum_probs=187.3

Q ss_pred             CcccceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHH
Q 045248            1 MCNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVG   80 (240)
Q Consensus         1 ~c~~~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG   80 (240)
                      +|++....+...+|+|+||++++++.++++|+++++++||++ ..+.|||+++.+..++      +|++|||+|+ |++|
T Consensus       106 ~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~-~~~~ta~~~l~~~~~~------~g~~VlV~Ga-G~vG  177 (343)
T 2dq4_A          106 VCLNTQILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAIL-EPFGNAVHTVYAGSGV------SGKSVLITGA-GPIG  177 (343)
T ss_dssp             GCTTCEEBTTTBCCSSBSEEEEEGGGEEEECTTSCHHHHTTH-HHHHHHHHHHHSTTCC------TTSCEEEECC-SHHH
T ss_pred             cCCCcceecCCCCCcceeEEEEchHHeEECCCCCCHHHHHhh-hHHHHHHHHHHHhCCC------CCCEEEEECC-CHHH
Confidence            366666566667899999999999999999999999999987 3556999999435543      7899999997 9999


Q ss_pred             HHHHHHHHhCCC-EEEEEeCc-ccHHHHHhcCCCEEEeCCCCcc-ccc-cCCCCCcccEEEeCCCC-CCccccccCCCCC
Q 045248           81 HYAVQLAKLGNT-HVTASCGA-RNIEFVKSLGADEVLDYKTPDG-AAL-KSPSGRKYDAVIHCATG-IPWSTFEPNLGTN  155 (240)
Q Consensus        81 ~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~-~~~-~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~  155 (240)
                      ++++|+|+.+|+ +|++++++ ++++.++++ ++.++++.+.+. ..+ +.+ +.++|++||++|+ ..+..++++++++
T Consensus       178 ~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~~~~~~~~~~~~~-~~g~D~vid~~g~~~~~~~~~~~l~~~  255 (343)
T 2dq4_A          178 LMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLVNPLEEDLLEVVRRVT-GSGVEVLLEFSGNEAAIHQGLMALIPG  255 (343)
T ss_dssp             HHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEEECTTTSCHHHHHHHHH-SSCEEEEEECSCCHHHHHHHHHHEEEE
T ss_pred             HHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhccCcCccCHHHHHHHhc-CCCCCEEEECCCCHHHHHHHHHHHhcC
Confidence            999999999999 99999965 788889999 999999876552 222 334 6789999999998 5688999999999


Q ss_pred             cEEEEeCCCchHHHHHHH-hhheeccceeeeEEEcCCHHHHHHHHHHHHCCce--EEecCceecchhHHHHHHHHHcCCC
Q 045248          156 GKVIDITPGPSAMLTFAL-KKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKL--KTVINSKHPLSKAEDAWAESIDGHA  232 (240)
Q Consensus       156 G~iv~~g~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~~a~~~~~~~~~  232 (240)
                      |+++.+|.... ...++. ..+..+++++.+++.....+.++++++++++|++  +++++++|+++++++||+.+.+++.
T Consensus       256 G~iv~~g~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~  334 (343)
T 2dq4_A          256 GEARILGIPSD-PIRFDLAGELVMRGITAFGIAGRRLWQTWMQGTALVYSGRVDLSPLLTHRLPLSRYREAFGLLASGQA  334 (343)
T ss_dssp             EEEEECCCCSS-CEEECHHHHTGGGTCEEEECCSCCTTHHHHHHHHHHHHTSSCCGGGEEEEEEGGGHHHHHHHHHHSSC
T ss_pred             CEEEEEecCCC-CceeCcHHHHHhCceEEEEeecCCCHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHhcCCc
Confidence            99999986532 222333 4566788888887542257889999999999995  5778899999999999999998876


Q ss_pred             cccEEEeC
Q 045248          233 TGKIIVEP  240 (240)
Q Consensus       233 ~gkvvl~~  240 (240)
                       ||+|+++
T Consensus       335 -gKvv~~~  341 (343)
T 2dq4_A          335 -VKVILDP  341 (343)
T ss_dssp             -SEEEEET
T ss_pred             -eEEEEee
Confidence             9999875

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=2.1e-35  Score=243.75  Aligned_cols=218  Identities=17%  Similarity=0.141  Sum_probs=179.7

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      .|+|+||++++++.++++|++++++ +|++++++.|||+++.+.+++     ++|++|||+| +|++|++++|+|+++|+
T Consensus       144 ~G~~aey~~v~~~~~~~iP~~l~~~-aa~l~~~~~ta~~~l~~~~~~-----~~g~~VlV~G-aG~vG~~aiqlak~~Ga  216 (373)
T 1p0f_A          144 TSTFTEYTVVADIAVAKIDPKAPLE-SCLIGCGFATGYGAAVNTAKV-----TPGSTCAVFG-LGGVGFSAIVGCKAAGA  216 (373)
T ss_dssp             TCCSBSEEEEETTSEEEECTTCCGG-GGGGGTHHHHHHHHHHTTTCC-----CTTCEEEEEC-CSHHHHHHHHHHHHHTC
T ss_pred             CccceeEEEEchhhEEECCCCCChh-hhhhhhHHHHHHHHHHhccCC-----CCCCEEEEEC-CCHHHHHHHHHHHHcCC
Confidence            5999999999999999999999999 999999999999998788888     8999999999 69999999999999999


Q ss_pred             -EEEEEeC-cccHHHHHhcCCCEEEeCCC--Cc-cccc-cCCCCCcccEEEeCCCC-CCccccccCCCCC-cEEEEeCCC
Q 045248           93 -HVTASCG-ARNIEFVKSLGADEVLDYKT--PD-GAAL-KSPSGRKYDAVIHCATG-IPWSTFEPNLGTN-GKVIDITPG  164 (240)
Q Consensus        93 -~v~~~~~-~~~~~~~~~~g~~~v~~~~~--~~-~~~~-~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~-G~iv~~g~~  164 (240)
                       +|+++++ +++++.++++|+++++++.+  .+ ...+ +.+.+ ++|+|||++|. ..+..++++++++ |+++.+|..
T Consensus       217 ~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~g-g~Dvvid~~g~~~~~~~~~~~l~~~~G~iv~~G~~  295 (373)
T 1p0f_A          217 SRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNG-GVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLA  295 (373)
T ss_dssp             SEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTS-CBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCC
T ss_pred             CeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCC-CCCEEEECCCCHHHHHHHHHHHhcCCCEEEEEccC
Confidence             8999985 58999999999999998774  23 2223 33444 89999999998 5688999999999 999999965


Q ss_pred             ch-HHHHHHHhhheeccceeeeEEEc-CCHHHHHHHHHHHHCCceE--EecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          165 PS-AMLTFALKKLTFSKKQLVPLLLI-PKRENLDFLVKLVKEGKLK--TVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       165 ~~-~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      .. ....++...+..++ ++.+++.. ...++++++++++++|+++  ++++++|+++++++||+.+.+++ .+|+|+++
T Consensus       296 ~~~~~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~-~~kvvi~~  373 (373)
T 1p0f_A          296 SPNERLPLDPLLLLTGR-SLKGSVFGGFKGEEVSRLVDDYMKKKINVNFLVSTKLTLDQINKAFELLSSGQ-GVRSIMIY  373 (373)
T ss_dssp             CTTCCEEECTHHHHTTC-EEEECSGGGCCGGGHHHHHHHHHTTSSCGGGGEEEEECGGGHHHHHHHTTTSS-CSEEEEEC
T ss_pred             CCCCccccCHHHhccCc-eEEeeccCCcCHHHHHHHHHHHHcCCCCchheEEEEeeHHHHHHHHHHHHCCC-cceEEEeC
Confidence            32 11112222333455 77776431 2347899999999999987  57789999999999999998777 47999875

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.2e-35  Score=243.11  Aligned_cols=221  Identities=26%  Similarity=0.343  Sum_probs=183.3

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      +|+|+||++++++.++++|++++++++|++++++.|||+++.+..++     +++++|||+|++|++|++++|+++..|+
T Consensus       122 ~G~~aey~~v~~~~~~~~P~~l~~~~aA~l~~~~~ta~~al~~~~~~-----~~g~~vlV~GasggiG~~~~~~a~~~Ga  196 (351)
T 1yb5_A          122 SGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACV-----KAGESVLVHGASGGVGLAACQIARAYGL  196 (351)
T ss_dssp             SCSSBSEEEEEGGGEEECCTTSCHHHHTTTHHHHHHHHHHHHTTSCC-----CTTCEEEEETCSSHHHHHHHHHHHHTTC
T ss_pred             CCcceeEEEECHHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhhCC-----CCcCEEEEECCCChHHHHHHHHHHHCCC
Confidence            69999999999999999999999999999999999999999778888     8999999999889999999999999999


Q ss_pred             EEEEEeCc-ccHHHHHhcCCCEEEeCCCCc-cc-cccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchHHH
Q 045248           93 HVTASCGA-RNIEFVKSLGADEVLDYKTPD-GA-ALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAML  169 (240)
Q Consensus        93 ~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~-~~-~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~  169 (240)
                      +|++++++ ++.+.++++|++.++++.+.+ .. ..+.+.+.++|++||++|++.+..++++++++|+++.+|....  .
T Consensus       197 ~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~G~~~~~~~~~~l~~~G~iv~~g~~~~--~  274 (351)
T 1yb5_A          197 KILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGSRGT--I  274 (351)
T ss_dssp             EEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHEEEEEEEEECCCCSC--E
T ss_pred             EEEEEeCChhHHHHHHHcCCCEEEeCCCchHHHHHHHHcCCCCcEEEEECCChHHHHHHHHhccCCCEEEEEecCCC--C
Confidence            99999965 788899999999999887655 22 2334455689999999998778889999999999999996432  1


Q ss_pred             HHHHhhheeccceeeeEEE-cCCHHHH----HHHHHHHHCCceEEecCceecchhHHHHHHH-HHcCCCcccEEEeC
Q 045248          170 TFALKKLTFSKKQLVPLLL-IPKRENL----DFLVKLVKEGKLKTVINSKHPLSKAEDAWAE-SIDGHATGKIIVEP  240 (240)
Q Consensus       170 ~~~~~~~~~~~~~i~~~~~-~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~-~~~~~~~gkvvl~~  240 (240)
                      .++...+..++.++.++.. ....+.+    +.+.+++++|+++++++++|+++++++||+. +.++...||+|+++
T Consensus       275 ~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~~gKvvi~~  351 (351)
T 1yb5_A          275 EINPRDTMAKESSIIGVTLFSSTKEEFQQYAAALQAGMEIGWLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL  351 (351)
T ss_dssp             EECTHHHHTTTCEEEECCGGGCCHHHHHHHHHHHHHHHHHTCCCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             ccCHHHHHhCCcEEEEEEeecCCHHHHHHHHHHHHHHHHCCCccCccceEEcHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            1223344567778877643 2234444    4566678889999999999999999999998 56666789999975

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=100.00  E-value=3.8e-36  Score=247.36  Aligned_cols=226  Identities=18%  Similarity=0.203  Sum_probs=185.1

Q ss_pred             cccceeccc-CCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHH
Q 045248            2 CNLWRIDVS-HNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVG   80 (240)
Q Consensus         2 c~~~~~~~~-~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG   80 (240)
                      |.+....+. ..+|+|+||++++++.++++|+ +++++||++. .+.|||+++ +..++     ++|++|||+|+ |++|
T Consensus       122 c~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~-~s~~~aa~~~-~~~ta~~~l-~~~~~-----~~g~~VlV~Ga-G~vG  192 (363)
T 3m6i_A          122 CERVDFLSTPPVPGLLRRYVNHPAVWCHKIGN-MSYENGAMLE-PLSVALAGL-QRAGV-----RLGDPVLICGA-GPIG  192 (363)
T ss_dssp             CTTCEETTSTTSCCSCBSEEEEEGGGEEECTT-CCHHHHHHHH-HHHHHHHHH-HHHTC-----CTTCCEEEECC-SHHH
T ss_pred             CCCccccCCCCCCccceeEEEEehhhEEECCC-CCHHHHHhhh-HHHHHHHHH-HHcCC-----CCCCEEEEECC-CHHH
Confidence            555555554 3689999999999999999999 9999999884 667999999 88888     89999999995 9999


Q ss_pred             HHHHHHHHhCCCE-EEEEeC-cccHHHHHhcCCCEEEeCCC-----Cc--cccccCCCCCcccEEEeCCCCC-Ccccccc
Q 045248           81 HYAVQLAKLGNTH-VTASCG-ARNIEFVKSLGADEVLDYKT-----PD--GAALKSPSGRKYDAVIHCATGI-PWSTFEP  150 (240)
Q Consensus        81 ~~~~~~a~~~g~~-v~~~~~-~~~~~~~~~~g~~~v~~~~~-----~~--~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~  150 (240)
                      ++++|+|+.+|++ |+++++ +++++.++++ ++.++++..     .+  ....+.+.+.++|++||++|++ .+..+++
T Consensus       193 ~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid~~g~~~~~~~~~~  271 (363)
T 3m6i_A          193 LITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECTGVESSIAAAIW  271 (363)
T ss_dssp             HHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEECSCCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chhcccccccccchHHHHHHHHHHhCCCCCCEEEECCCChHHHHHHHH
Confidence            9999999999996 888885 5899999999 666665431     11  1233456678999999999986 5899999


Q ss_pred             CCCCCcEEEEeCCCchHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCce--EEecCceecchhHHHHHHHHH
Q 045248          151 NLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKL--KTVINSKHPLSKAEDAWAESI  228 (240)
Q Consensus       151 ~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~~a~~~~~  228 (240)
                      +++++|+++.+|..... ..++...+.++++++.+++.  ..+.++++++++++|++  +++++++|+++++++||+.+.
T Consensus       272 ~l~~~G~iv~~G~~~~~-~~~~~~~~~~~~~~i~g~~~--~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~  348 (363)
T 3m6i_A          272 AVKFGGKVFVIGVGKNE-IQIPFMRASVREVDLQFQYR--YCNTWPRAIRLVENGLVDLTRLVTHRFPLEDALKAFETAS  348 (363)
T ss_dssp             HSCTTCEEEECCCCCSC-CCCCHHHHHHHTCEEEECCS--CSSCHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHH
T ss_pred             HhcCCCEEEEEccCCCC-ccccHHHHHhcCcEEEEccC--CHHHHHHHHHHHHhCCCChHHceeeeeeHHHHHHHHHHHh
Confidence            99999999999965432 22344466778888888763  27789999999999998  457889999999999999999


Q ss_pred             cC-CCcccEEEeC
Q 045248          229 DG-HATGKIIVEP  240 (240)
Q Consensus       229 ~~-~~~gkvvl~~  240 (240)
                      ++ ...+|+|++.
T Consensus       349 ~~~~~~~Kvvi~~  361 (363)
T 3m6i_A          349 DPKTGAIKVQIQS  361 (363)
T ss_dssp             CGGGCCSEEEEEC
T ss_pred             ccCCCeEEEEEec
Confidence            87 5678999864

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=3.6e-35  Score=242.43  Aligned_cols=219  Identities=15%  Similarity=0.100  Sum_probs=180.8

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      .|+|+||++++++.++++|+++++++||++++++.|||+++.+..++     ++|++|||+| +|++|++++|+|+.+|+
T Consensus       143 ~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~-----~~g~~VlV~G-aG~vG~~a~qla~~~Ga  216 (374)
T 2jhf_A          143 TSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKV-----TQGSTCAVFG-LGGVGLSVIMGCKAAGA  216 (374)
T ss_dssp             TCCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTTCC-----CTTCEEEEEC-CSHHHHHHHHHHHHTTC
T ss_pred             CccCeeEEEEchHHeEECCCCCCHHHhhhhccHHHHHHHHHHhccCC-----CCCCEEEEEC-CCHHHHHHHHHHHHcCC
Confidence            59999999999999999999999999999999999999998788888     8999999999 79999999999999999


Q ss_pred             -EEEEEeC-cccHHHHHhcCCCEEEeCCC--Cc-cccc-cCCCCCcccEEEeCCCC-CCccccccCCCCC-cEEEEeCCC
Q 045248           93 -HVTASCG-ARNIEFVKSLGADEVLDYKT--PD-GAAL-KSPSGRKYDAVIHCATG-IPWSTFEPNLGTN-GKVIDITPG  164 (240)
Q Consensus        93 -~v~~~~~-~~~~~~~~~~g~~~v~~~~~--~~-~~~~-~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~-G~iv~~g~~  164 (240)
                       +|+++++ +++++.++++|+++++++.+  .+ ...+ +.+. .++|++||++|. ..+..++++++++ |+++.+|..
T Consensus       217 ~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~-~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~  295 (374)
T 2jhf_A          217 ARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSN-GGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVP  295 (374)
T ss_dssp             SEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTT-SCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCC
T ss_pred             CeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhC-CCCcEEEECCCCHHHHHHHHHHhhcCCcEEEEeccC
Confidence             8999985 58999999999999998764  22 2223 2333 389999999998 5688999999999 999999964


Q ss_pred             ch-HHHHHHHhhheeccceeeeEEEc--CCHHHHHHHHHHHHCCceE--EecCceecchhHHHHHHHHHcCCCcccEEEe
Q 045248          165 PS-AMLTFALKKLTFSKKQLVPLLLI--PKRENLDFLVKLVKEGKLK--TVINSKHPLSKAEDAWAESIDGHATGKIIVE  239 (240)
Q Consensus       165 ~~-~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~  239 (240)
                      .. ....++...+..++ ++.+++..  ...+.++++++++++|+++  ++++++|+++++++||+.+.+++ .+|+|++
T Consensus       296 ~~~~~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~-~~Kvvi~  373 (374)
T 2jhf_A          296 PDSQNLSMNPMLLLSGR-TWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLLRSGE-SIRTILT  373 (374)
T ss_dssp             CTTCCEEECTHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTC-CSEEEEE
T ss_pred             CCCCccccCHHHHhcCC-eEEEeccCCCChHHHHHHHHHHHHcCCCCchhheEEEEeHHHHHHHHHHHHCCC-cceEEEe
Confidence            42 11122223344455 77776431  1257899999999999987  46789999999999999998877 4799987


Q ss_pred             C
Q 045248          240 P  240 (240)
Q Consensus       240 ~  240 (240)
                      +
T Consensus       374 ~  374 (374)
T 2jhf_A          374 F  374 (374)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=2.1e-35  Score=243.85  Aligned_cols=220  Identities=14%  Similarity=0.098  Sum_probs=181.2

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g   91 (240)
                      ..|+|+||++++++.++++|++++++++|++++++.|||+++.+..++     ++|++|||+| +|++|++++|+|+.+|
T Consensus       141 ~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~-----~~g~~VlV~G-aG~vG~~avqla~~~G  214 (373)
T 2fzw_A          141 GTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKL-----EPGSVCAVFG-LGGVGLAVIMGCKVAG  214 (373)
T ss_dssp             TTCCSBSEEEEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHTTTCC-----CTTCEEEEEC-CSHHHHHHHHHHHHHT
T ss_pred             CCccceeEEEEchhheEECCCCCCHHHHhhhccHHHHHHHHHHhhcCC-----CCCCEEEEEC-CCHHHHHHHHHHHHcC
Confidence            359999999999999999999999999999999999999998788888     8999999999 6999999999999999


Q ss_pred             C-EEEEEeC-cccHHHHHhcCCCEEEeCCC--Cc-cccc-cCCCCCcccEEEeCCCC-CCccccccCCCCC-cEEEEeCC
Q 045248           92 T-HVTASCG-ARNIEFVKSLGADEVLDYKT--PD-GAAL-KSPSGRKYDAVIHCATG-IPWSTFEPNLGTN-GKVIDITP  163 (240)
Q Consensus        92 ~-~v~~~~~-~~~~~~~~~~g~~~v~~~~~--~~-~~~~-~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~-G~iv~~g~  163 (240)
                      + +|+++++ +++++.++++|+++++++.+  .+ ...+ +.+. .++|++||++|+ ..+..++++++++ |+++.+|.
T Consensus       215 a~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~-~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          215 ASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTD-GGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             CSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTT-SCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSC
T ss_pred             CCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhC-CCCCEEEECCCcHHHHHHHHHhhccCCcEEEEEec
Confidence            9 8999985 58999999999999998764  23 2223 3334 389999999998 5688999999999 99999996


Q ss_pred             Cch-HHHHHHHhhheeccceeeeEEEc--CCHHHHHHHHHHHHCCceE--EecCceecchhHHHHHHHHHcCCCcccEEE
Q 045248          164 GPS-AMLTFALKKLTFSKKQLVPLLLI--PKRENLDFLVKLVKEGKLK--TVINSKHPLSKAEDAWAESIDGHATGKIIV  238 (240)
Q Consensus       164 ~~~-~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl  238 (240)
                      ... ....++...+..++ ++.+++..  ...+.++++++++++|+++  ++++++|+|+++++||+.+.+++. +|+|+
T Consensus       294 ~~~~~~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvi  371 (373)
T 2fzw_A          294 AASGEEIATRPFQLVTGR-TWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFELMHSGKS-IRTVV  371 (373)
T ss_dssp             CCTTCCEEECTHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCSGGGEEEEEEGGGHHHHHHHHHHTCC-SEEEE
T ss_pred             CCCCceeeeCHHHHhcCC-EEEEeccCCCCcHHHHHHHHHHHHcCCCCchheEeEEeeHHHHHHHHHHHhCCCc-ceEEE
Confidence            532 11122222334455 77776431  1357899999999999987  577899999999999999988774 69998


Q ss_pred             eC
Q 045248          239 EP  240 (240)
Q Consensus       239 ~~  240 (240)
                      ++
T Consensus       372 ~~  373 (373)
T 2fzw_A          372 KI  373 (373)
T ss_dssp             EC
T ss_pred             eC
Confidence            75

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=100.00  E-value=6.5e-35  Score=240.07  Aligned_cols=216  Identities=19%  Similarity=0.251  Sum_probs=182.0

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCC-CCCeEEEEcCCchHHHHHHHHHHhC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSG-QQKNILVTAASGGVGHYAVQLAKLG   90 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~-~g~~vlV~G~~g~vG~~~~~~a~~~   90 (240)
                      .+|+|+||++++++.++++|++++++++|++++++.|||+++ ...++     . +|++|||+| +|++|++++|+|+.+
T Consensus       138 ~~G~~aey~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~al-~~~~~-----~~~g~~VlV~G-aG~vG~~~~q~a~~~  210 (366)
T 1yqd_A          138 TYGGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGITVYSPL-KYFGL-----DEPGKHIGIVG-LGGLGHVAVKFAKAF  210 (366)
T ss_dssp             CCCSSBSEEEEEGGGCEECCTTSCTTTTGGGGTHHHHHHHHH-HHTTC-----CCTTCEEEEEC-CSHHHHHHHHHHHHT
T ss_pred             CCCccccEEEEchhhEEECCCCCCHHHhhhhhhhHHHHHHHH-HhcCc-----CCCCCEEEEEC-CCHHHHHHHHHHHHC
Confidence            579999999999999999999999999999999999999999 45667     6 999999999 699999999999999


Q ss_pred             CCEEEEEeC-cccHHHHH-hcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC-CccccccCCCCCcEEEEeCCCchH
Q 045248           91 NTHVTASCG-ARNIEFVK-SLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTNGKVIDITPGPSA  167 (240)
Q Consensus        91 g~~v~~~~~-~~~~~~~~-~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~g~~~~~  167 (240)
                      |++|+++++ +++++.++ ++|++.++++.+.+ ...+.+  .++|+|||++|.. .+..++++++++|+++.+|.....
T Consensus       211 Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~-~~~~~~--~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~  287 (366)
T 1yqd_A          211 GSKVTVISTSPSKKEEALKNFGADSFLVSRDQE-QMQAAA--GTLDGIIDTVSAVHPLLPLFGLLKSHGKLILVGAPEKP  287 (366)
T ss_dssp             TCEEEEEESCGGGHHHHHHTSCCSEEEETTCHH-HHHHTT--TCEEEEEECCSSCCCSHHHHHHEEEEEEEEECCCCSSC
T ss_pred             CCEEEEEeCCHHHHHHHHHhcCCceEEeccCHH-HHHHhh--CCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEccCCCC
Confidence            999999996 47888876 99999999877532 111222  3799999999975 588999999999999999965432


Q ss_pred             HHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          168 MLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       168 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                       ..++...+..+++++.+++. ...+.++++++++++|++++.+ ++|+|+++++||+.+.+++..||+|+++
T Consensus       288 -~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~l~~~g~l~~~~-~~~~l~~~~~A~~~~~~~~~~gKvvl~~  357 (366)
T 1yqd_A          288 -LELPAFSLIAGRKIVAGSGI-GGMKETQEMIDFAAKHNITADI-EVISTDYLNTAMERLAKNDVRYRFVIDV  357 (366)
T ss_dssp             -EEECHHHHHTTTCEEEECCS-CCHHHHHHHHHHHHHTTCCCCE-EEECGGGHHHHHHHHHTTCCSSEEEECH
T ss_pred             -CCcCHHHHHhCCcEEEEecC-CCHHHHHHHHHHHHcCCCCCce-EEEcHHHHHHHHHHHHcCCcceEEEEEc
Confidence             12233445677888888653 5678899999999999998866 6999999999999999998889999863

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=100.00  E-value=3.6e-36  Score=247.66  Aligned_cols=224  Identities=19%  Similarity=0.276  Sum_probs=181.8

Q ss_pred             CCcccceEEEecCCceeeCCC-----------CCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCC-CeEEEEcCCchH
Q 045248           12 NGGGLAEFAVAKESSTVARPS-----------EVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQ-KNILVTAASGGV   79 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~-----------~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g-~~vlV~G~~g~v   79 (240)
                      .+|+|+||++++++.++++|+           ++++++||++++++.|||+++.+..++     ++| ++|||+|++|++
T Consensus       106 ~~G~~aey~~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~-----~~g~~~VlV~Ga~G~v  180 (364)
T 1gu7_A          106 NFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKL-----TPGKDWFIQNGGTSAV  180 (364)
T ss_dssp             CCCCSBSEEEEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTHHHHHHHHHHSSSCC-----CTTTCEEEESCTTSHH
T ss_pred             CCCcchheEecCHHHeEEcCCccccccccccCCCCHHHHhhccccHHHHHHHHHHhhcc-----CCCCcEEEECCCCcHH
Confidence            469999999999999999998           899999999999999999999766788     899 999999988999


Q ss_pred             HHHHHHHHHhCCCEEEEEeCc-cc----HHHHHhcCCCEEEeCCC---Cc-cccc-cCC--CCCcccEEEeCCCCCCccc
Q 045248           80 GHYAVQLAKLGNTHVTASCGA-RN----IEFVKSLGADEVLDYKT---PD-GAAL-KSP--SGRKYDAVIHCATGIPWST  147 (240)
Q Consensus        80 G~~~~~~a~~~g~~v~~~~~~-~~----~~~~~~~g~~~v~~~~~---~~-~~~~-~~~--~~~~~d~v~d~~g~~~~~~  147 (240)
                      |++++|+|+.+|++|++++++ ++    .+.++++|++.++++.+   .+ ...+ +.+  .+.++|+||||+|++....
T Consensus       181 G~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~~~~g~Dvvid~~G~~~~~~  260 (364)
T 1gu7_A          181 GKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTG  260 (364)
T ss_dssp             HHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHHHHH
T ss_pred             HHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhccCCCceEEEECCCchhHHH
Confidence            999999999999999988854 44    67889999999998764   33 2222 333  4678999999999877568


Q ss_pred             cccCCCCCcEEEEeCCCchHHHHHHHhhheeccceeeeEEEcC----C----HHHHHHHHHHHHCCceEEecCceecc--
Q 045248          148 FEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIP----K----RENLDFLVKLVKEGKLKTVINSKHPL--  217 (240)
Q Consensus       148 ~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~----~~~~~~~~~~~~~~~i~~~~~~~~~~--  217 (240)
                      ++++++++|+++.+|........++...+..+++++.+++...    .    .+.++++++++++|++++.+..++++  
T Consensus       261 ~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~  340 (364)
T 1gu7_A          261 IARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIAWYEEGKLTDAKSIETLYDG  340 (364)
T ss_dssp             HHHTSCTTCEEEECCCCSSCCEEECHHHHHHSCCEEEECCHHHHHTTCHHHHHHHHHHHHHHHHHTCCCCCCCEEEECCS
T ss_pred             HHHHhccCCEEEEecCCCCCCcccCHHHHhhcCcEEEEEchhHhcccCHHHHHHHHHHHHHHHHcCCcccccceEEecCc
Confidence            8999999999999996432222222334556778888764311    1    36789999999999998766666666  


Q ss_pred             -hhHHHHHHHHHcCCCcccEEEeC
Q 045248          218 -SKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       218 -~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                       +++++||+.+.+++..||+|+++
T Consensus       341 l~~~~~A~~~~~~~~~~gKvvv~~  364 (364)
T 1gu7_A          341 TKPLHELYQDGVANSKDGKQLITY  364 (364)
T ss_dssp             SSCHHHHHHHHHHTGGGSCEEEEC
T ss_pred             hhhHHHHHHHHHhCCCCceEEEeC
Confidence             49999999999888889999975

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=100.00  E-value=7.6e-36  Score=265.86  Aligned_cols=220  Identities=23%  Similarity=0.232  Sum_probs=185.0

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN   91 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g   91 (240)
                      ..|+|+||++++++.++++|++++++++|++++.++|||+++.+.+++     ++|++|||+|++|++|++++|+||.+|
T Consensus       296 ~~G~~ae~~~v~~~~~~~iP~~ls~~~AA~l~~~~~Ta~~al~~~a~l-----~~G~~VLI~gaaGgvG~~aiqlAk~~G  370 (795)
T 3slk_A          296 IPKAFGPLAVADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLAGL-----RPGESLLVHSAAGGVGMAAIQLARHLG  370 (795)
T ss_dssp             CSSCSSSEEEEETTSEEECCTTCCHHHHHHHHHHHHHHHCCCCCCTCC-----CTTCCEEEESTTBHHHHHHHHHHHHTT
T ss_pred             ecCCCcCEEEeehHHEEECCCCCCHHHHHhhhHHHHHHHHHHHHHhCC-----CCCCEEEEecCCCHHHHHHHHHHHHcC
Confidence            469999999999999999999999999999999999999999888888     899999999999999999999999999


Q ss_pred             CEEEEEeCcccHHHHHhcCCCEEEeCCCCcc--ccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchHH-
Q 045248           92 THVTASCGARNIEFVKSLGADEVLDYKTPDG--AALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAM-  168 (240)
Q Consensus        92 ~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~--~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~-  168 (240)
                      ++|++++++++.+.++ +|+++++++++.+.  ...+.++++|+|+|||++|++.+..++++++++|+++.+|...... 
T Consensus       371 a~V~~t~~~~k~~~l~-lga~~v~~~~~~~~~~~i~~~t~g~GvDvVld~~gg~~~~~~l~~l~~~Gr~v~iG~~~~~~~  449 (795)
T 3slk_A          371 AEVYATASEDKWQAVE-LSREHLASSRTCDFEQQFLGATGGRGVDVVLNSLAGEFADASLRMLPRGGRFLELGKTDVRDP  449 (795)
T ss_dssp             CCEEEECCGGGGGGSC-SCGGGEECSSSSTHHHHHHHHSCSSCCSEEEECCCTTTTHHHHTSCTTCEEEEECCSTTCCCH
T ss_pred             CEEEEEeChHHhhhhh-cChhheeecCChhHHHHHHHHcCCCCeEEEEECCCcHHHHHHHHHhcCCCEEEEeccccccCc
Confidence            9999999776666665 99999999887762  3456678899999999999999999999999999999999643211 


Q ss_pred             HHHHHhhheeccceeeeEEE-----cCCHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          169 LTFALKKLTFSKKQLVPLLL-----IPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       169 ~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      ......   .++.++.++..     ....+.++++++++++|+++++++++|+++++++||+.+.+++..||+|+++
T Consensus       450 ~~~~~~---~~~~~~~~~~l~~~~~~~~~~~l~~~~~l~~~g~l~p~~~~~~~l~~~~eA~~~l~~g~~~GKvVl~~  523 (795)
T 3slk_A          450 VEVADA---HPGVSYQAFDTVEAGPQRIGEMLHELVELFEGRVLEPLPVTAWDVRQAPEALRHLSQARHVGKLVLTM  523 (795)
T ss_dssp             HHHHHH---SSSEEEEECCGGGGHHHHHHHHHHHHHHHHHTTSCCCCCEEEEEGGGHHHHHHHHHHTCCCBEEEEEC
T ss_pred             cccccc---CCCCEEEEeeccccCHHHHHHHHHHHHHHHHcCCcCCCcceeEcHHHHHHHHHHHhcCCccceEEEec
Confidence            111111   13333333211     1124678999999999999999999999999999999999999999999974

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=100.00  E-value=1e-34  Score=239.32  Aligned_cols=228  Identities=17%  Similarity=0.248  Sum_probs=178.0

Q ss_pred             CCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhh-hCCCcC---CC---CCCCeEEEEcCCchHHHHH
Q 045248           11 HNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQS-AGVKLD---GS---GQQKNILVTAASGGVGHYA   83 (240)
Q Consensus        11 ~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~-~~~~~~---~~---~~g~~vlV~G~~g~vG~~~   83 (240)
                      ..+|+|+||++++++.++++|+++++++||++++++.|||+++.+. .++..|   ..   ++|++|||+|++|++|+++
T Consensus       102 ~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a  181 (371)
T 3gqv_A          102 PDQGAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVT  181 (371)
T ss_dssp             TTCCSSBSEEECCTTCEEECCTTCCHHHHHTSHHHHHHHHHHHHHHTCCCCCSSCSSCCCCSSCCEEEEESTTSHHHHHH
T ss_pred             CCCCcCcCeEEEchhheEECCCCCCHHHHhhhhhhHHHHHHHHHhhccCCCCCccccccccCCCcEEEEECCCcHHHHHH
Confidence            3579999999999999999999999999999999999999999766 443111   00   5899999999889999999


Q ss_pred             HHHHHhCCCEEEEEeCcccHHHHHhcCCCEEEeCCCCc-cccccCCCCCcccEEEeCCCC-CCccccccCC-CCCcEEEE
Q 045248           84 VQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCATG-IPWSTFEPNL-GTNGKVID  160 (240)
Q Consensus        84 ~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l-~~~G~iv~  160 (240)
                      +|+|+.+|++|++++++++++.++++|+++++++++.+ ...++...++++|++||++|+ ..+..+++++ +++|+++.
T Consensus       182 ~qla~~~Ga~Vi~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v~d~~g~~~~~~~~~~~l~~~~G~iv~  261 (371)
T 3gqv_A          182 MQMLRLSGYIPIATCSPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCITNVESTTFCFAAIGRAGGHYVS  261 (371)
T ss_dssp             HHHHHHTTCEEEEEECGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEESSCSHHHHHHHHHHSCTTCEEEEE
T ss_pred             HHHHHHCCCEEEEEeCHHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCccEEEECCCchHHHHHHHHHhhcCCCEEEE
Confidence            99999999999999888999999999999999988776 233333333459999999998 4588899999 59999999


Q ss_pred             eCCCchHH-----HHH---HHhhheeccceeeeEEEc-CCH-------HHHHHHHHHHHCCceEE--ecCceecchhHHH
Q 045248          161 ITPGPSAM-----LTF---ALKKLTFSKKQLVPLLLI-PKR-------ENLDFLVKLVKEGKLKT--VINSKHPLSKAED  222 (240)
Q Consensus       161 ~g~~~~~~-----~~~---~~~~~~~~~~~i~~~~~~-~~~-------~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~  222 (240)
                      +|..+...     ...   ....+..+++++.+++.. ...       +.++++++++++|++++  .+++.|+++++++
T Consensus       262 ~g~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~l~~~~~  341 (371)
T 3gqv_A          262 LNPFPEHAATRKMVTTDWTLGPTIFGEGSTWPAPYGRPGSEEERQFGEDLWRIAGQLVEDGRLVHHPLRVVQGGFDHIKQ  341 (371)
T ss_dssp             SSCCCC---CCSCEEEEECCGGGGGTSCBSCSTTTCBCCCHHHHHHHHHHHHHHHHHHHTTSSCCCCEEEEEECHHHHHH
T ss_pred             EecCccccccccccceeeeeeeeeccccccccccccccccHHHHHHHHHHHHHHHHHHHCCeeeCCcCeecCCcHHHHHH
Confidence            99543210     000   012344566777665321 222       23468889999999986  4456699999999


Q ss_pred             HHHHHHcCCCcccEEE
Q 045248          223 AWAESIDGHATGKIIV  238 (240)
Q Consensus       223 a~~~~~~~~~~gkvvl  238 (240)
                      ||+.+.+++..||+|+
T Consensus       342 A~~~l~~g~~~Gkkvv  357 (371)
T 3gqv_A          342 GMELVRKGELSGEKLV  357 (371)
T ss_dssp             HHHHHHTTCCSSCEEE
T ss_pred             HHHHHHcCCCceEEEE
Confidence            9999999998886554

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=100.00  E-value=1.8e-36  Score=248.76  Aligned_cols=215  Identities=18%  Similarity=0.134  Sum_probs=177.8

Q ss_pred             CCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCC------CeEEEEcCCchHHHHH-
Q 045248           11 HNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQ------KNILVTAASGGVGHYA-   83 (240)
Q Consensus        11 ~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g------~~vlV~G~~g~vG~~~-   83 (240)
                      ..+|+|+||++++++.++++|++++ ++ |+++..+.|||+++ +.+++     ++|      ++|||+|+ |++|+++ 
T Consensus       119 ~~~G~~aey~~v~~~~~~~iP~~~~-~~-aal~~~~~ta~~al-~~~~~-----~~g~~~~~~~~VlV~Ga-G~vG~~a~  189 (357)
T 2b5w_A          119 GAHGYMSEFFTSPEKYLVRIPRSQA-EL-GFLIEPISITEKAL-EHAYA-----SRSAFDWDPSSAFVLGN-GSLGLLTL  189 (357)
T ss_dssp             EECCSCBSEEEEEGGGEEECCGGGS-TT-GGGHHHHHHHHHHH-HHHHH-----TTTTSCCCCCEEEEECC-SHHHHHHH
T ss_pred             CCCcceeeEEEEchHHeEECCCCcc-hh-hhhhchHHHHHHHH-HhcCC-----CCCcccCCCCEEEEECC-CHHHHHHH
Confidence            4579999999999999999999999 54 55778889999999 67777     789      99999996 9999999 


Q ss_pred             HHHH-HhCCCE-EEEEeCc-c---cHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC-CccccccCCCCCc
Q 045248           84 VQLA-KLGNTH-VTASCGA-R---NIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTNG  156 (240)
Q Consensus        84 ~~~a-~~~g~~-v~~~~~~-~---~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G  156 (240)
                      +|+| +.+|++ |++++++ +   +++.++++|++++ ++.+.+...+....+ ++|+|||++|++ .+..++++++++|
T Consensus       190 iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v-~~~~~~~~~i~~~~g-g~Dvvid~~g~~~~~~~~~~~l~~~G  267 (357)
T 2b5w_A          190 AMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYV-DSRQTPVEDVPDVYE-QMDFIYEATGFPKHAIQSVQALAPNG  267 (357)
T ss_dssp             HHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEE-ETTTSCGGGHHHHSC-CEEEEEECSCCHHHHHHHHHHEEEEE
T ss_pred             HHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCccc-CCCccCHHHHHHhCC-CCCEEEECCCChHHHHHHHHHHhcCC
Confidence            9999 999995 9999975 6   8999999999998 887655221333334 899999999986 5889999999999


Q ss_pred             EEEEeCCCchHHHHHHHhhh----eeccceeeeEEEcCCHHHHHHHHHHHHCC--c-eEEecCceecchhHHHHHHHHHc
Q 045248          157 KVIDITPGPSAMLTFALKKL----TFSKKQLVPLLLIPKRENLDFLVKLVKEG--K-LKTVINSKHPLSKAEDAWAESID  229 (240)
Q Consensus       157 ~iv~~g~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~-i~~~~~~~~~~~~~~~a~~~~~~  229 (240)
                      +++.+|........++...+    ..+++++.+++. ...+.++++++++++|  + ++++++++|+++++++||+.+  
T Consensus       268 ~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~l~~~g~~~~~~~~i~~~~~l~~~~~A~~~~--  344 (357)
T 2b5w_A          268 VGALLGVPSDWAFEVDAGAFHREMVLHNKALVGSVN-SHVEHFEAATVTFTKLPKWFLEDLVTGVHPLSEFEAAFDDD--  344 (357)
T ss_dssp             EEEECCCCCCCCCCCCHHHHHHHHHHTTCEEEECCC-CCHHHHHHHHHHHHHSCHHHHHHHEEEEEEGGGGGGGGCCS--
T ss_pred             EEEEEeCCCCCCceecHHHHhHHHHhCCeEEEEecc-CCHHHHHHHHHHHHhCchhhhhhhcceeecHHHHHHHHHHh--
Confidence            99999865411122233334    677888888653 4688999999999999  8 688888999999999999988  


Q ss_pred             CCCcccEEEeC
Q 045248          230 GHATGKIIVEP  240 (240)
Q Consensus       230 ~~~~gkvvl~~  240 (240)
                       ...||+|+++
T Consensus       345 -~~~gKvvi~~  354 (357)
T 2b5w_A          345 -DTTIKTAIEF  354 (357)
T ss_dssp             -TTCCEEEEEC
T ss_pred             -CCCceEEEEe
Confidence             3478999875

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.8e-35  Score=243.54  Aligned_cols=219  Identities=17%  Similarity=0.117  Sum_probs=178.1

Q ss_pred             CCcccceEEEecCC--ceeeCCCCCChhh----hhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHH
Q 045248           12 NGGGLAEFAVAKES--STVARPSEVSAAE----GSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQ   85 (240)
Q Consensus        12 ~~G~~~e~~~v~~~--~~~~ip~~~~~~~----aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~   85 (240)
                      .+|+|+||+++++.  .++++|+++++++    +|+++..+.|||+++ ..+++     ++|++|||+| +|++|++++|
T Consensus       131 ~~G~~aey~~v~~~~~~~~~~P~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~-----~~g~~VlV~G-aG~vG~~aiq  203 (398)
T 1kol_A          131 WTGGQAEYVLVPYADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGA-VTAGV-----GPGSTVYVAG-AGPVGLAAAA  203 (398)
T ss_dssp             BCCCSBSEEEESSHHHHCEECSCHHHHHHTHHHHGGGGTHHHHHHHHH-HHTTC-----CTTCEEEEEC-CSHHHHHHHH
T ss_pred             CCceeeeEEEecchhCeEEECCCCcchhhhcccccccccHHHHHHHHH-HHcCC-----CCCCEEEEEC-CcHHHHHHHH
Confidence            46999999999987  8999999999988    788898999999999 57788     8999999999 7999999999


Q ss_pred             HHHhCCC-EEEEEeC-cccHHHHHhcCCCEEEeCCCCc--cc-cccCCCCCcccEEEeCCCCC----------------C
Q 045248           86 LAKLGNT-HVTASCG-ARNIEFVKSLGADEVLDYKTPD--GA-ALKSPSGRKYDAVIHCATGI----------------P  144 (240)
Q Consensus        86 ~a~~~g~-~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~--~~-~~~~~~~~~~d~v~d~~g~~----------------~  144 (240)
                      +|+.+|+ +|+++++ +++++.++++|++ ++++.+.+  .. ..+.+.+.++|+|||++|++                .
T Consensus       204 lAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~-~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~  282 (398)
T 1kol_A          204 SARLLGAAVVIVGDLNPARLAHAKAQGFE-IADLSLDTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATV  282 (398)
T ss_dssp             HHHHTTCSEEEEEESCHHHHHHHHHTTCE-EEETTSSSCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHH
T ss_pred             HHHHCCCCeEEEEcCCHHHHHHHHHcCCc-EEccCCcchHHHHHHHHhCCCCCCEEEECCCCcccccccccccccchHHH
Confidence            9999999 8999986 4889999999996 78876543  22 23445667899999999975                4


Q ss_pred             ccccccCCCCCcEEEEeCCC-chH-----------HHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceE---E
Q 045248          145 WSTFEPNLGTNGKVIDITPG-PSA-----------MLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLK---T  209 (240)
Q Consensus       145 ~~~~~~~l~~~G~iv~~g~~-~~~-----------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~---~  209 (240)
                      +..++++++++|+++.+|.. ...           ...++...+..++.++.+.. ....+.++++++++++|+++   +
T Consensus       283 ~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~l~~~g~l~~~~~  361 (398)
T 1kol_A          283 LNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFHTGQ-TPVMKYNRALMQAIMWDRINIAEV  361 (398)
T ss_dssp             HHHHHHHEEEEEEEEECSCCCSCCTTCSSHHHHTTCCCCCHHHHHHTTCEEEESS-CCHHHHHHHHHHHHHTTSCCHHHH
T ss_pred             HHHHHHHHhcCCEEEEeccccCCcccccccccccccccccHHHHhhcccEEEecc-cChHHHHHHHHHHHHcCCCCCccc
Confidence            77899999999999999854 110           01122233445666766543 23456789999999999998   5


Q ss_pred             ecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          210 VINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       210 ~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      +++++|+++++++||+.+.+++. ||+|+++
T Consensus       362 ~i~~~~~l~~~~~A~~~~~~~~~-gKvvi~~  391 (398)
T 1kol_A          362 VGVQVISLDDAPRGYGEFDAGVP-KKFVIDP  391 (398)
T ss_dssp             HTEEEECGGGHHHHHHHHHHTCS-CEEEECT
T ss_pred             eeEEEEcHHHHHHHHHHHhCCCc-eEEEEEe
Confidence            67899999999999999998887 9999864

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=100.00  E-value=4e-35  Score=243.92  Aligned_cols=219  Identities=16%  Similarity=0.158  Sum_probs=181.6

Q ss_pred             CCcccceEEEecCC--ceeeCCCCCChhh----hhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHH
Q 045248           12 NGGGLAEFAVAKES--STVARPSEVSAAE----GSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQ   85 (240)
Q Consensus        12 ~~G~~~e~~~v~~~--~~~~ip~~~~~~~----aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~   85 (240)
                      .+|+|+||++++++  .++++|+++++++    +|+++..+.|||+++ +.+++     ++|++|||+| +|++|++++|
T Consensus       131 ~~G~~aey~~v~~~~~~~~~iP~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~-----~~g~~VlV~G-aG~vG~~aiq  203 (398)
T 2dph_A          131 WSGGQAEYVLVPYADYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGC-VSAGV-----KPGSHVYIAG-AGPVGRCAAA  203 (398)
T ss_dssp             CCCSSBSEEEESSHHHHCEECSSHHHHHHTHHHHTTTTTHHHHHHHHH-HHTTC-----CTTCEEEEEC-CSHHHHHHHH
T ss_pred             CCceeeeeEEeccccCeEEECCCCCChhhhcchhhhhcCHHHHHHHHH-HHcCC-----CCCCEEEEEC-CCHHHHHHHH
Confidence            47999999999987  8999999999998    888999999999999 78888     8999999999 6999999999


Q ss_pred             HHHhCCC-EEEEEeCc-ccHHHHHhcCCCEEEeCCCCcc--ccc-cCCCCCcccEEEeCCCCC---------------Cc
Q 045248           86 LAKLGNT-HVTASCGA-RNIEFVKSLGADEVLDYKTPDG--AAL-KSPSGRKYDAVIHCATGI---------------PW  145 (240)
Q Consensus        86 ~a~~~g~-~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~--~~~-~~~~~~~~d~v~d~~g~~---------------~~  145 (240)
                      +|+.+|+ +|++++++ ++++.++++|++ ++++.+.+.  ..+ +.+.+.++|+|||++|+.               .+
T Consensus       204 lak~~Ga~~Vi~~~~~~~~~~~a~~lGa~-~i~~~~~~~~~~~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~  282 (398)
T 2dph_A          204 GARLLGAACVIVGDQNPERLKLLSDAGFE-TIDLRNSAPLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGAL  282 (398)
T ss_dssp             HHHHHTCSEEEEEESCHHHHHHHHTTTCE-EEETTSSSCHHHHHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHH
T ss_pred             HHHHcCCCEEEEEcCCHHHHHHHHHcCCc-EEcCCCcchHHHHHHHHhCCCCCCEEEECCCCccccccccccccccHHHH
Confidence            9999999 99999964 889999999995 888776542  222 344556899999999975               37


Q ss_pred             cccccCCCCCcEEEEeCCCc------------hHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceE--E--
Q 045248          146 STFEPNLGTNGKVIDITPGP------------SAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLK--T--  209 (240)
Q Consensus       146 ~~~~~~l~~~G~iv~~g~~~------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~--~--  209 (240)
                      ..++++++++|+++.+|...            .....++...+..+++++.++.. ...+.++++++++++|+++  +  
T Consensus       283 ~~~~~~l~~gG~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~-~~~~~~~~~~~l~~~g~l~~~~~~  361 (398)
T 2dph_A          283 NSLFDVVRAGGAIGIPGIYVGSDPDPVNKDAGSGRLHLDFGKMWTKSIRIMTGMA-PVTNYNRHLTEAILWDQMPYLSKV  361 (398)
T ss_dssp             HHHHHHEEEEEEEECCSCCCSCCSSCSSHHHHTTEEEEEHHHHHHTTCEEECSSC-CGGGTHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHhcCCEEEEeccccccccccccccccCCcccccHHHHhhcCCEEEEecc-CcHHHHHHHHHHHHcCCCCccchh
Confidence            88999999999999998651            11112223345567777776542 4567799999999999998  6  


Q ss_pred             ecCceecchhHHHHHHHHHcCCCcccEEEeC
Q 045248          210 VINSKHPLSKAEDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       210 ~~~~~~~~~~~~~a~~~~~~~~~~gkvvl~~  240 (240)
                      +++++|+|+++++||+.+.+++. ||+|+++
T Consensus       362 ~i~~~~~l~~~~~A~~~~~~~~~-gKvvv~~  391 (398)
T 2dph_A          362 MNIEVITLDQAPDGYAKFDKGSP-AKFVIDP  391 (398)
T ss_dssp             HCEEEECSTTHHHHHHHHHTTCS-CEEEECT
T ss_pred             hEEEEEcHHHHHHHHHHHhcCCc-eEEEEec
Confidence            67899999999999999998887 9999864

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=100.00  E-value=8.2e-35  Score=239.58  Aligned_cols=226  Identities=16%  Similarity=0.162  Sum_probs=180.5

Q ss_pred             cccceec--ccC-CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHH--h--hhCCCcCCCC--C------
Q 045248            2 CNLWRID--VSH-NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALT--Q--SAGVKLDGSG--Q------   66 (240)
Q Consensus         2 c~~~~~~--~~~-~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~--~--~~~~~~~~~~--~------   66 (240)
                      |++....  +.. .+|+|+||++++++.++++|++++ ++|+ ++..+.|||+++.  .  ..++     +  +      
T Consensus       107 C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~l~-~~Aa-l~~~~~ta~~al~~~~~~~~~~-----~~~~~~~~~~  179 (366)
T 2cdc_A          107 CETGEFGEAGIHKMDGFMREWWYDDPKYLVKIPKSIE-DIGI-LAQPLADIEKSIEEILEVQKRV-----PVWTCDDGTL  179 (366)
T ss_dssp             CSSSCCEEETTBEECCSCBSEEEECGGGEEEECGGGT-TTGG-GHHHHHHHHHHHHHHHHHGGGS-----SCCSCTTSSS
T ss_pred             CCCCCcccCCccCCCCceeEEEEechHHeEECcCCcc-hhhh-hcCcHHHHHHHHHhhhhcccCc-----cccccccccC
Confidence            4444433  333 579999999999999999999999 7764 6778889999996  3  6777     6  7      


Q ss_pred             -CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-c---ccHHHHHhcCCCEEEeCCCCc-cccccCCCCCcccEEEeCC
Q 045248           67 -QKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-A---RNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCA  140 (240)
Q Consensus        67 -g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~---~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~  140 (240)
                       |++|||+|+ |++|++++|+++.+|++|+++++ +   ++.+.++++|++.+ + .+ + ...+..+. .++|++||++
T Consensus       180 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v-~-~~-~~~~~~~~~~-~~~d~vid~~  254 (366)
T 2cdc_A          180 NCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYY-N-SS-NGYDKLKDSV-GKFDVIIDAT  254 (366)
T ss_dssp             TTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEE-E-CT-TCSHHHHHHH-CCEEEEEECC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCcee-c-hH-HHHHHHHHhC-CCCCEEEECC
Confidence             999999997 99999999999999999999996 4   67889999999888 7 54 4 22222233 6899999999


Q ss_pred             CCC-Cc-cccccCCCCCcEEEEeCCCchHHHHHHHhh---heeccceeeeEEEcCCHHHHHHHHHHHHCCc------eEE
Q 045248          141 TGI-PW-STFEPNLGTNGKVIDITPGPSAMLTFALKK---LTFSKKQLVPLLLIPKRENLDFLVKLVKEGK------LKT  209 (240)
Q Consensus       141 g~~-~~-~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~------i~~  209 (240)
                      |.. .+ ..++++++++|+++.+|........++...   +..+++++.+++. ...+.++++++++++|+      +++
T Consensus       255 g~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~l~~~g~i~~~~~~~~  333 (366)
T 2cdc_A          255 GADVNILGNVIPLLGRNGVLGLFGFSTSGSVPLDYKTLQEIVHTNKTIIGLVN-GQKPHFQQAVVHLASWKTLYPKAAKM  333 (366)
T ss_dssp             CCCTHHHHHHGGGEEEEEEEEECSCCCSCEEEEEHHHHHHHHHTTCEEEECCC-CCHHHHHHHHHHHHHHHHHSHHHHTT
T ss_pred             CChHHHHHHHHHHHhcCCEEEEEecCCCCccccChhhhHHHHhcCcEEEEecC-CCHHHHHHHHHHHHcCCCCcccchhh
Confidence            986 47 899999999999999986543212222333   5677888888653 56889999999999999      557


Q ss_pred             ecCceecchhHHHHHHHH-HcCCCcccEEEeC
Q 045248          210 VINSKHPLSKAEDAWAES-IDGHATGKIIVEP  240 (240)
Q Consensus       210 ~~~~~~~~~~~~~a~~~~-~~~~~~gkvvl~~  240 (240)
                      +++++|+++++++||+.+ .++...||+|+++
T Consensus       334 ~i~~~~~l~~~~~A~~~l~~~~~~~gKvvi~~  365 (366)
T 2cdc_A          334 LITKTVSINDEKELLKVLREKEHGEIKIRILW  365 (366)
T ss_dssp             SEEEEEETTCHHHHHHHHHCCCTTCCEEEEEC
T ss_pred             cEEEEEcHHHHHHHHHHHhhhcCCceEEEEec
Confidence            888999999999999984 3356689999875

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=100.00  E-value=1.2e-33  Score=232.32  Aligned_cols=220  Identities=30%  Similarity=0.372  Sum_probs=181.5

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      +|+|+||++++++.++++|++ + .++|+++..+.|||+++.+.+++     ++|++|||+||+|++|++++|+|+.+|+
T Consensus       117 ~G~~aey~~v~~~~~~~~P~~-~-~~aaal~~~~~ta~~al~~~~~~-----~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga  189 (362)
T 2c0c_A          117 PGSFAEYTVVPASIATPVPSV-K-PEYLTLLVSGTTAYISLKELGGL-----SEGKKVLVTAAAGGTGQFAMQLSKKAKC  189 (362)
T ss_dssp             SCCSBSEEEEEGGGCEECSSS-C-HHHHTTTTHHHHHHHHHHHHTCC-----CTTCEEEETTTTBTTHHHHHHHHHHTTC
T ss_pred             CCcceeEEEEcHHHeEECCCC-c-hHhhcccchHHHHHHHHHHhcCC-----CCCCEEEEeCCCcHHHHHHHHHHHhCCC
Confidence            699999999999999999986 4 56778888899999999878888     8999999999999999999999999999


Q ss_pred             EEEEEeCc-ccHHHHHhcCCCEEEeCCCCcc-ccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchHH--
Q 045248           93 HVTASCGA-RNIEFVKSLGADEVLDYKTPDG-AALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAM--  168 (240)
Q Consensus        93 ~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~-~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~--  168 (240)
                      +|++++++ ++++.++++|++.++++++.+. ..+....+.++|++||++|+..+..++++++++|+++.+|......  
T Consensus       190 ~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~  269 (362)
T 2c0c_A          190 HVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFISGYQTP  269 (362)
T ss_dssp             EEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEECSCTHHHHHHHHHEEEEEEEEECCCGGGTTSS
T ss_pred             EEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCCcCcc
Confidence            99999975 7889999999999999876552 2333333568999999999877889999999999999998643211  


Q ss_pred             --------HHHHHhhheeccceeeeEEEcC----CHHHHHHHHHHHHCCceEEec--------CceecchhHHHHHHHHH
Q 045248          169 --------LTFALKKLTFSKKQLVPLLLIP----KRENLDFLVKLVKEGKLKTVI--------NSKHPLSKAEDAWAESI  228 (240)
Q Consensus       169 --------~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~~~~~a~~~~~  228 (240)
                              ..+ ...+..++.++.+++...    ..+.++++++++++|++++.+        ++.++++++++||+.+.
T Consensus       270 ~~~~~~~~~~~-~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~l~~~~~A~~~~~  348 (362)
T 2c0c_A          270 TGLSPVKAGTL-PAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFRAVNYMY  348 (362)
T ss_dssp             SCCCCCCCTTH-HHHHHHHTCEEEECCGGGCGGGHHHHHHHHHHHHHTTCSCCCEECSTTSTTCSCBSTTHHHHHHHHHH
T ss_pred             ccccccccccc-HHHHHhhcceEEEEEhhhhhhhHHHHHHHHHHHHHCCCeEeeeccccccccccccCHHHHHHHHHHHH
Confidence                    011 134556777887765311    256799999999999998653        46789999999999999


Q ss_pred             cCCCcccEEEeC
Q 045248          229 DGHATGKIIVEP  240 (240)
Q Consensus       229 ~~~~~gkvvl~~  240 (240)
                      +++..||+|+++
T Consensus       349 ~~~~~gKvvv~~  360 (362)
T 2c0c_A          349 MGKNTGKIVVEL  360 (362)
T ss_dssp             TTCCSBEEEEEC
T ss_pred             cCCCCceEEEEc
Confidence            888889999874

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=100.00  E-value=1.8e-33  Score=228.92  Aligned_cols=223  Identities=23%  Similarity=0.309  Sum_probs=181.1

Q ss_pred             CcccceEEEecCCceeeCCCC----CChhh-hhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHH
Q 045248           13 GGGLAEFAVAKESSTVARPSE----VSAAE-GSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLA   87 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~----~~~~~-aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a   87 (240)
                      .|+|+||++++++.++++|++    +++++ +|+++.++.|||+++.+..++     ++|++|||+|++|++|++++|++
T Consensus        92 ~g~~aey~~v~~~~~~~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~-----~~g~~vlV~Ga~ggiG~~~~~~~  166 (333)
T 1v3u_A           92 QSGWTTHFISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGV-----KGGETVLVSAAAGAVGSVVGQIA  166 (333)
T ss_dssp             CCCSBSEEEESSTTEEECC--CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCC-----CSSCEEEEESTTBHHHHHHHHHH
T ss_pred             cCceEEEEEechHHeEEcCcccccCCCHHHHHHHhCChHHHHHHHHHHhhCC-----CCCCEEEEecCCCcHHHHHHHHH
Confidence            389999999999999999997    88888 588899999999999888888     89999999998899999999999


Q ss_pred             HhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCC-Cc-cccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248           88 KLGNTHVTASCGA-RNIEFVKSLGADEVLDYKT-PD-GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus        88 ~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~-~~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      +..|++|++++++ ++.+.++++|++.++|..+ .+ ...+....++++|++||++|++.+..++++++++|+++.+|..
T Consensus       167 ~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~  246 (333)
T 1v3u_A          167 KLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAI  246 (333)
T ss_dssp             HHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEECCCC
T ss_pred             HHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECCChHHHHHHHHHHhcCCEEEEEecc
Confidence            9999999999964 7888889999999998876 44 2223222225899999999987788999999999999999865


Q ss_pred             chHH------HHHHHhhheeccceeeeEEEcC-C----HHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCc
Q 045248          165 PSAM------LTFALKKLTFSKKQLVPLLLIP-K----RENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHAT  233 (240)
Q Consensus       165 ~~~~------~~~~~~~~~~~~~~i~~~~~~~-~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~  233 (240)
                      ....      ...+...+..+++++.++.... .    .+.++++++++++|++++.+..+++++++++||+.+.+++..
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~  326 (333)
T 1v3u_A          247 SVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEGKIQYHEHVTKGFENMPAAFIEMLNGANL  326 (333)
T ss_dssp             C-------CCBCCCHHHHHHTTCEEEECCGGGCCTHHHHHHHHHHHHHHHTTSSCCCEEEEECGGGHHHHHHHHHTTCCS
T ss_pred             ccccCCCCCCCCcCHHHHhhcCceEEEEehhhcchHHHHHHHHHHHHHHHCCCccCccccccCHHHHHHHHHHHHcCCCC
Confidence            3211      0013345667788888865321 1    467889999999999987665668999999999999998888


Q ss_pred             ccEEEeC
Q 045248          234 GKIIVEP  240 (240)
Q Consensus       234 gkvvl~~  240 (240)
                      ||+|+++
T Consensus       327 gKvvl~~  333 (333)
T 1v3u_A          327 GKAVVTA  333 (333)
T ss_dssp             BEEEEEC
T ss_pred             ceEEEeC
Confidence            9999875

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=100.00  E-value=1e-33  Score=232.40  Aligned_cols=221  Identities=19%  Similarity=0.187  Sum_probs=181.0

Q ss_pred             CcccceEEEecCCceeeCCCCC-----ChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCC--CeEEEEcCCchHHHHHHH
Q 045248           13 GGGLAEFAVAKESSTVARPSEV-----SAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQ--KNILVTAASGGVGHYAVQ   85 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~-----~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g--~~vlV~G~~g~vG~~~~~   85 (240)
                      .|+|+||++++++.++++|+++     +++ +++++.++.|||+++.+..++     ++|  ++|||+|++|++|++++|
T Consensus       106 ~G~~aey~~v~~~~~~~iP~~~~~~~~~~~-~a~l~~~~~ta~~al~~~~~~-----~~g~~~~vlI~GasggiG~~~~~  179 (357)
T 2zb4_A          106 YWPWQTKVILDGNSLEKVDPQLVDGHLSYF-LGAIGMPGLTSLIGIQEKGHI-----TAGSNKTMVVSGAAGACGSVAGQ  179 (357)
T ss_dssp             EEESBSEEEEEGGGCEECCGGGGTTCGGGG-GTTTSHHHHHHHHHHHHHSCC-----CTTSCCEEEESSTTBHHHHHHHH
T ss_pred             CCCcEEEEEEchHHceecCcccccCchhHH-HHhcccHHHHHHHHHHHhcCC-----CCCCccEEEEECCCcHHHHHHHH
Confidence            4899999999999999999999     555 778888999999999888888     899  999999988999999999


Q ss_pred             HHHhCCC-EEEEEeCc-ccHHHHHh-cCCCEEEeCCCCc-cccc-cCCCCCcccEEEeCCCCCCccccccCCCCCcEEEE
Q 045248           86 LAKLGNT-HVTASCGA-RNIEFVKS-LGADEVLDYKTPD-GAAL-KSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVID  160 (240)
Q Consensus        86 ~a~~~g~-~v~~~~~~-~~~~~~~~-~g~~~v~~~~~~~-~~~~-~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~  160 (240)
                      +++..|+ +|++++++ ++.+.+++ +|++.++++.+.+ ...+ +.+.+ ++|++||++|+..+..++++++++|+++.
T Consensus       180 ~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~-~~d~vi~~~G~~~~~~~~~~l~~~G~iv~  258 (357)
T 2zb4_A          180 IGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRESCPA-GVDVYFDNVGGNISDTVISQMNENSHIIL  258 (357)
T ss_dssp             HHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTTSCHHHHHHHHCTT-CEEEEEESCCHHHHHHHHHTEEEEEEEEE
T ss_pred             HHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCchHHHHHHHHhcCC-CCCEEEECCCHHHHHHHHHHhccCcEEEE
Confidence            9999999 99999975 67888876 9999999887655 2223 33334 89999999998778899999999999999


Q ss_pred             eCCCchHHHHHH---------HhhheeccceeeeEEEcC----CHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHH
Q 045248          161 ITPGPSAMLTFA---------LKKLTFSKKQLVPLLLIP----KRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAES  227 (240)
Q Consensus       161 ~g~~~~~~~~~~---------~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~  227 (240)
                      +|........++         ...+..+++++.++....    ..+.++++++++++|++++.+..+|+++++++||+.+
T Consensus       259 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~  338 (357)
T 2zb4_A          259 CGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYKDKFEPGILQLSQWFKEGKLKIKETVINGLENMGAAFQSM  338 (357)
T ss_dssp             CCCGGGTTSCCCSSCCCCHHHHHHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHHTTCCCCCEEEEECGGGHHHHHHHH
T ss_pred             ECCccccccCccccccchhhhhhhhhcceeEEEEeehhhhhHHHHHHHHHHHHHHHcCCCcCccceecCHHHHHHHHHHH
Confidence            986432110111         123456677777764311    2567999999999999987666779999999999999


Q ss_pred             HcCCCcccEEEeC
Q 045248          228 IDGHATGKIIVEP  240 (240)
Q Consensus       228 ~~~~~~gkvvl~~  240 (240)
                      .+++..||+|+++
T Consensus       339 ~~~~~~gKvvi~~  351 (357)
T 2zb4_A          339 MTGGNIGKQIVCI  351 (357)
T ss_dssp             HTTCCSBEEEEEC
T ss_pred             HcCCCCceEEEEE
Confidence            9988889999874

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=100.00  E-value=2.3e-33  Score=229.34  Aligned_cols=221  Identities=23%  Similarity=0.302  Sum_probs=179.6

Q ss_pred             cccceEEEecCCc--eeeCCC---CCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHH
Q 045248           14 GGLAEFAVAKESS--TVARPS---EVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAK   88 (240)
Q Consensus        14 G~~~e~~~v~~~~--~~~ip~---~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~   88 (240)
                      |+|+||++++++.  ++++|+   +++++ +|++++++.|||+++.+.+++     ++|++|||+|++|++|++++|+++
T Consensus       104 g~~aey~~v~~~~~~~~~ip~~~~~~~~~-aa~l~~~~~ta~~al~~~~~~-----~~g~~vlI~Ga~g~iG~~~~~~a~  177 (345)
T 2j3h_A          104 VAWEEYSVITPMTHAHFKIQHTDVPLSYY-TGLLGMPGMTAYAGFYEVCSP-----KEGETVYVSAASGAVGQLVGQLAK  177 (345)
T ss_dssp             EESBSEEEECCCTTTCEEECCCSSCTTGG-GTTTSHHHHHHHHHHHTTSCC-----CTTCEEEESSTTSHHHHHHHHHHH
T ss_pred             cCceeEEEecccccceeecCCCCCCHHHH-HHhccccHHHHHHHHHHHhCC-----CCCCEEEEECCCcHHHHHHHHHHH
Confidence            7999999999876  999996   35555 678888999999999878888     899999999988999999999999


Q ss_pred             hCCCEEEEEeCc-ccHHHHH-hcCCCEEEeCCCC-c-cccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248           89 LGNTHVTASCGA-RNIEFVK-SLGADEVLDYKTP-D-GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus        89 ~~g~~v~~~~~~-~~~~~~~-~~g~~~v~~~~~~-~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      ..|++|++++++ ++.+.++ ++|++.++|+.+. + ...+....+.++|++||++|++.+..++++++++|+++.+|..
T Consensus       178 ~~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~G~~  257 (345)
T 2j3h_A          178 MMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVGGKMLDAVLVNMNMHGRIAVCGMI  257 (345)
T ss_dssp             HTTCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEECCCG
T ss_pred             HCCCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEccc
Confidence            999999999965 7888887 7999999987653 3 2223222246899999999987788999999999999999865


Q ss_pred             chH-----HHHHHHhhheeccceeeeEEEcC----CHHHHHHHHHHHHCCceEEecCceecchhHHHHHHHHHcCCCccc
Q 045248          165 PSA-----MLTFALKKLTFSKKQLVPLLLIP----KRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATGK  235 (240)
Q Consensus       165 ~~~-----~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gk  235 (240)
                      ...     ...++...+.++++++.+++...    ..+.++++++++++|++++.++++|+|+++++||+.+.+++..||
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~A~~~~~~~~~~gK  337 (345)
T 2j3h_A          258 SQYNLENQEGVHNLSNIIYKRNRIQGFVVSDFYDKYSKFLEFVLPHIREGKITYVEDVADGLEKAPEALVGLFHGKNVGK  337 (345)
T ss_dssp             GGTTCSSCCCBSCTTHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSCCCEEEEESGGGSHHHHHHHHTTCCSSE
T ss_pred             cccccCCccccccHHHHhhhceeeceeeehhhhhhHHHHHHHHHHHHHCCCCcCcccccCCHHHHHHHHHHHHcCCCceE
Confidence            421     11223344566777887754321    134589999999999999877778999999999999999988999


Q ss_pred             EEEeC
Q 045248          236 IIVEP  240 (240)
Q Consensus       236 vvl~~  240 (240)
                      +|+.+
T Consensus       338 vvv~~  342 (345)
T 2j3h_A          338 QVVVV  342 (345)
T ss_dssp             EEEES
T ss_pred             EEEEe
Confidence            99874

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=99.97  E-value=1.8e-33  Score=232.40  Aligned_cols=219  Identities=14%  Similarity=0.113  Sum_probs=174.2

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEc-CCchHHHHHHHHHHhC
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTA-ASGGVGHYAVQLAKLG   90 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G-~~g~vG~~~~~~a~~~   90 (240)
                      .+|+|+||++++++.++++|++++++++|++++.+.|||+++....       ++|++|||+| |+|++|++++|+|+.+
T Consensus       123 ~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~-------~~g~~vlV~gag~G~vG~~a~q~a~~~  195 (379)
T 3iup_A          123 GGAMYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGMVETMR-------LEGHSALVHTAAASNLGQMLNQICLKD  195 (379)
T ss_dssp             CSCCSBSEEEEEGGGEEECCTTCCHHHHTTSSHHHHHHHHHHHHHH-------HTTCSCEEESSTTSHHHHHHHHHHHHH
T ss_pred             CCCcceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhc-------cCCCEEEEECCCCCHHHHHHHHHHHHC
Confidence            3599999999999999999999999999999999999998884432       4899999995 7999999999999999


Q ss_pred             CCEEEEEeC-cccHHHHHhcCCCEEEeCCCCcc--ccccCCCCCcccEEEeCCCCCC-ccccccCCC-----CC------
Q 045248           91 NTHVTASCG-ARNIEFVKSLGADEVLDYKTPDG--AALKSPSGRKYDAVIHCATGIP-WSTFEPNLG-----TN------  155 (240)
Q Consensus        91 g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~--~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~-----~~------  155 (240)
                      |++|+++++ +++++.++++|+++++++++.+.  ...+.+.+.++|++|||+|++. +..++++++     ++      
T Consensus       196 Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~v~~~t~~~g~d~v~d~~g~~~~~~~~~~~l~~~~~r~~G~~~~~  275 (379)
T 3iup_A          196 GIKLVNIVRKQEQADLLKAQGAVHVCNAASPTFMQDLTEALVSTGATIAFDATGGGKLGGQILTCMEAALNKSAREYSRY  275 (379)
T ss_dssp             TCCEEEEESSHHHHHHHHHTTCSCEEETTSTTHHHHHHHHHHHHCCCEEEESCEEESHHHHHHHHHHHHHHTTCCSCCTT
T ss_pred             CCEEEEEECCHHHHHHHHhCCCcEEEeCCChHHHHHHHHHhcCCCceEEEECCCchhhHHHHHHhcchhhhccccceeec
Confidence            999999985 58999999999999999887662  2334556678999999999854 567777774     44      


Q ss_pred             -----cEEEEeCCCchHHHHHHHhhheeccceeeeEEEcC-----CH----HHHHHHHHHHHCCceEEecCceecchhH-
Q 045248          156 -----GKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIP-----KR----ENLDFLVKLVKEGKLKTVINSKHPLSKA-  220 (240)
Q Consensus       156 -----G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~-  220 (240)
                           |+++.+|.....+.  .......++.++.+++...     ..    +.++++++++.+ .++++++++|+++++ 
T Consensus       276 G~~~~g~iv~~G~~~~~~~--~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~i~~~~~l~~~~  352 (379)
T 3iup_A          276 GSTTHKQVYLYGGLDTSPT--EFNRNFGMAWGMGGWLLFPFLQKIGRERANALKQRVVAELKT-TFASHYSKEISLAEVL  352 (379)
T ss_dssp             CCCSCEEEEECCCSEEEEE--EECCCSCSCEEEEECCHHHHHHHHCHHHHHHHHHHHHHTTTT-TTCCCCSEEEEHHHHT
T ss_pred             ccccCceEEEecCCCCCcc--ccccccccceEEEEEEeeeecccCCHHHHHHHHHHHHHHHhc-cCCCcceEEecHHHhh
Confidence                 56666665432211  2234456677777765311     22    334667777777 588999999999999 


Q ss_pred             -HHHHHHHHcCCCcccEEEeC
Q 045248          221 -EDAWAESIDGHATGKIIVEP  240 (240)
Q Consensus       221 -~~a~~~~~~~~~~gkvvl~~  240 (240)
                       ++||+.+.+++..||+|+++
T Consensus       353 ~~~A~~~l~~~~~~gKvVv~~  373 (379)
T 3iup_A          353 DLDMIAVYNKRATGEKYLINP  373 (379)
T ss_dssp             CHHHHHHHTTCCTTCCEEEET
T ss_pred             hHHHHHHHhcCCCCceEEEeC
Confidence             99999999999999999975

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.97  E-value=2.9e-31  Score=257.89  Aligned_cols=231  Identities=18%  Similarity=0.238  Sum_probs=187.1

Q ss_pred             ceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHH
Q 045248            5 WRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAV   84 (240)
Q Consensus         5 ~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~   84 (240)
                      .++.+....|+|+||++++++.++++|+++++++||++++.+.|||+++.+.+++     ++|++|||+||+|++|++++
T Consensus      1611 drV~g~~~~G~~Aeyv~vp~~~v~~iPd~ls~~eAA~lp~~~~TA~~al~~~a~l-----~~Ge~VLI~gaaGgVG~aAi 1685 (2512)
T 2vz8_A         1611 RRVMGMVPAEGLATSVLLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRGRM-----QPGESVLIHSGSGGVGQAAI 1685 (2512)
T ss_dssp             CCEEEECSSCCSBSEEECCGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCC-----CTTCEEEETTTTSHHHHHHH
T ss_pred             CEEEEeecCCceeeEEEcccceEEEeCCCCCHHHHHHhHHHHHHHHHHHHHHhcC-----CCCCEEEEEeCChHHHHHHH
Confidence            3455666679999999999999999999999999999999999999999888888     89999999999999999999


Q ss_pred             HHHHhCCCEEEEEeCc-ccHHHHHh----cCCCEEEeCCCCcc--ccccCCCCCcccEEEeCCCCCCccccccCCCCCcE
Q 045248           85 QLAKLGNTHVTASCGA-RNIEFVKS----LGADEVLDYKTPDG--AALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGK  157 (240)
Q Consensus        85 ~~a~~~g~~v~~~~~~-~~~~~~~~----~g~~~v~~~~~~~~--~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~  157 (240)
                      |+|+.+|++|++++++ ++.+++++    +|+++++++++.+.  ...+.+++.|+|+|||++|++.+..++++++++|+
T Consensus      1686 qlAk~~Ga~Viat~~s~~k~~~l~~~~~~lga~~v~~~~~~~~~~~i~~~t~g~GvDvVld~~g~~~l~~~l~~L~~~Gr 1765 (2512)
T 2vz8_A         1686 AIALSRGCRVFTTVGSAEKRAYLQARFPQLDETCFANSRDTSFEQHVLRHTAGKGVDLVLNSLAEEKLQASVRCLAQHGR 1765 (2512)
T ss_dssp             HHHHHTTCEEEEEESCHHHHHHHHHHCTTCCSTTEEESSSSHHHHHHHHTTTSCCEEEEEECCCHHHHHHHHTTEEEEEE
T ss_pred             HHHHHcCCEEEEEeCChhhhHHHHhhcCCCCceEEecCCCHHHHHHHHHhcCCCCceEEEECCCchHHHHHHHhcCCCcE
Confidence            9999999999999965 78888875    78999999877652  33456777899999999998779999999999999


Q ss_pred             EEEeCCCchHHHHHHHhhheeccceeeeEEEc----CCHHHHHHHHHH----HHCCceEEecCceecchhHHHHHHHHHc
Q 045248          158 VIDITPGPSAMLTFALKKLTFSKKQLVPLLLI----PKRENLDFLVKL----VKEGKLKTVINSKHPLSKAEDAWAESID  229 (240)
Q Consensus       158 iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~a~~~~~~  229 (240)
                      ++.+|................+++++.++...    ...+.+++++++    +.+|++++.++++|+++++++||+.+.+
T Consensus      1766 ~V~iG~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~l~~l~~~~~~g~l~p~i~~~f~l~ei~eA~~~l~~ 1845 (2512)
T 2vz8_A         1766 FLEIGKFDLSNNHALGMAVFLKNVTFHGILLDSLFEEGGATWQEVSELLKAGIQEGVVQPLKCTVFPRTKVEAAFRYMAQ 1845 (2512)
T ss_dssp             EEECCCHHHHTTCEEEGGGGGGCCEEEECCGGGTTSSCCHHHHHHHHHHHHHHTTTCSCCCCEEEEESSTHHHHHHHHHT
T ss_pred             EEEeecccccccCcccccccccCCcEEEeeHHHHhhhCHHHHHHHHHHHHHHHHcCCcCCCcceEecHHHHHHHHHhhhc
Confidence            99999642211110112234556666665431    123445555444    4578899989999999999999999999


Q ss_pred             CCCcccEEEeC
Q 045248          230 GHATGKIIVEP  240 (240)
Q Consensus       230 ~~~~gkvvl~~  240 (240)
                      ++..||+|+++
T Consensus      1846 g~~~GKvVi~~ 1856 (2512)
T 2vz8_A         1846 GKHIGKVVIQV 1856 (2512)
T ss_dssp             TCCSSEEEEEC
T ss_pred             cCccceEEEEC
Confidence            99899999864

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.93  E-value=1.1e-26  Score=175.43  Aligned_cols=184  Identities=23%  Similarity=0.315  Sum_probs=131.3

Q ss_pred             CceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccH
Q 045248           25 SSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNI  103 (240)
Q Consensus        25 ~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~  103 (240)
                      +.++++|++++++++|+++.++.|||+++.+..++     ++|++|||+|++|++|++++|+++..|++|++++++ ++.
T Consensus         2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~-----~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~   76 (198)
T 1pqw_A            2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRL-----SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKR   76 (198)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTSCC-----CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHH
T ss_pred             CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCC-----CCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence            56889999999999999999999999999777888     899999999999999999999999999999999975 677


Q ss_pred             HHHHhcCCCEEEeCCCCcc-c-cccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchH-HHHHHHhhheecc
Q 045248          104 EFVKSLGADEVLDYKTPDG-A-ALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSA-MLTFALKKLTFSK  180 (240)
Q Consensus       104 ~~~~~~g~~~v~~~~~~~~-~-~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~-~~~~~~~~~~~~~  180 (240)
                      +.++++|++.+++..+.+. . ..+.+.+.++|+++|++|.+.+..++++++++|+++.+|..... ...++.. ...++
T Consensus        77 ~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~-~~~~~  155 (198)
T 1pqw_A           77 EMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKKDVYADASLGLA-ALAKS  155 (198)
T ss_dssp             HHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCCTHHHHHHHHTEEEEEEEEECSCGGGTTTCEEEGG-GGTTT
T ss_pred             HHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEECCchHHHHHHHHHhccCCEEEEEcCCCCcCcCcCChh-HhcCC
Confidence            8888999988888776542 2 22334456899999999987788999999999999999975421 1111111 12355


Q ss_pred             ceeeeEEE------cC--CHHHHHHHHHHHHCCceEEecCce
Q 045248          181 KQLVPLLL------IP--KRENLDFLVKLVKEGKLKTVINSK  214 (240)
Q Consensus       181 ~~i~~~~~------~~--~~~~~~~~~~~~~~~~i~~~~~~~  214 (240)
                      .++.++..      .+  ..+.++++++++++|++++.+.++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~  197 (198)
T 1pqw_A          156 ASFSVVDLDLNLKLQPARYRQLLQHILQHVADGKLEVLPVTA  197 (198)
T ss_dssp             CEEEECCHHHHHHHCHHHHHHHHHHHHHHHHTTSSCCCCCC-
T ss_pred             cEEEEEehHHhhccCHHHHHHHHHHHHHHHHcCCccCCCCCc
Confidence            55553211      01  146789999999999998765443

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.95  E-value=2.5e-10  Score=93.32  Aligned_cols=134  Identities=14%  Similarity=0.170  Sum_probs=89.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCE--EEeCCCCcc-ccccCCCCCcccEEEeCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADE--VLDYKTPDG-AALKSPSGRKYDAVIHCAT  141 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~--v~~~~~~~~-~~~~~~~~~~~d~v~d~~g  141 (240)
                      ++++|+|+| +|++|+++++.++.+|++|++++++ ++.+.+++++...  +++....+. ..+     .++|+||+|++
T Consensus       166 ~~~~VlViG-aGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~DvVI~~~~  239 (361)
T 1pjc_A          166 KPGKVVILG-GGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAV-----AEADLLIGAVL  239 (361)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHH-----HTCSEEEECCC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHH-----cCCCEEEECCC
Confidence            348999999 5999999999999999999999875 7888887776543  333322111 111     26999999998


Q ss_pred             CCC-------ccccccCCCCCcEEEEeCCCchH------HHHHHHhhheeccceeeeEEEcC-----------CHHHHHH
Q 045248          142 GIP-------WSTFEPNLGTNGKVIDITPGPSA------MLTFALKKLTFSKKQLVPLLLIP-----------KRENLDF  197 (240)
Q Consensus       142 ~~~-------~~~~~~~l~~~G~iv~~g~~~~~------~~~~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~  197 (240)
                      .+.       ....++.++++|+++.++.....      +.+++...+..+++++.+....+           ....++.
T Consensus       240 ~~~~~~~~li~~~~~~~~~~g~~ivdv~~~~gg~~e~~~~~~~~~~~~~~~~v~~~~~~~lp~~~~~~~s~~~~~~~~~~  319 (361)
T 1pjc_A          240 VPGRRAPILVPASLVEQMRTGSVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYGVPNMPGAVPWTATQALNNSTLPY  319 (361)
T ss_dssp             CTTSSCCCCBCHHHHTTSCTTCEEEETTCTTCCSBTTCCCCCSSSCEEEETTEEEECCSCGGGGCHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCeecCHHHHhhCCCCCEEEEEecCCCCCCccccCCCCCCCEEEECCEEEEEeCCcchhhHHHHHHHHHHHHHHH
Confidence            532       34567889999999999854321      11222333445566655532111           1334678


Q ss_pred             HHHHHHCC
Q 045248          198 LVKLVKEG  205 (240)
Q Consensus       198 ~~~~~~~~  205 (240)
                      +++++++|
T Consensus       320 l~~l~~~G  327 (361)
T 1pjc_A          320 VVKLANQG  327 (361)
T ss_dssp             HHHHHHHG
T ss_pred             HHHHHhCC
Confidence            88888877

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.89  E-value=2.1e-10  Score=96.61  Aligned_cols=105  Identities=14%  Similarity=0.080  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHhhhC-CCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCcc
Q 045248           45 AGLTAHQALTQSAG-VKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDG  122 (240)
Q Consensus        45 ~~~ta~~~l~~~~~-~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~  122 (240)
                      ...++++++.+..+ .     .+|++|+|+| .|.+|..+++.++.+|++|++++++ .+.+.++++|++ +.+.    .
T Consensus       256 ~~~s~~~g~~r~~~~~-----l~GktV~IiG-~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~-~~~l----~  324 (494)
T 3ce6_A          256 TRHSLIDGINRGTDAL-----IGGKKVLICG-YGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFD-VVTV----E  324 (494)
T ss_dssp             HHHHHHHHHHHHHCCC-----CTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCH----H
T ss_pred             hhhhhhHHHHhccCCC-----CCcCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCE-EecH----H
Confidence            34566777644332 3     6899999999 8999999999999999999999975 677888889985 3221    1


Q ss_pred             ccccCCCCCcccEEEeCCCCCC-cc-ccccCCCCCcEEEEeCCCc
Q 045248          123 AALKSPSGRKYDAVIHCATGIP-WS-TFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus       123 ~~~~~~~~~~~d~v~d~~g~~~-~~-~~~~~l~~~G~iv~~g~~~  165 (240)
                      ..+     .+.|+|++++|... +. ..++.++++|+++.+|...
T Consensus       325 e~l-----~~aDvVi~atgt~~~i~~~~l~~mk~ggilvnvG~~~  364 (494)
T 3ce6_A          325 EAI-----GDADIVVTATGNKDIIMLEHIKAMKDHAILGNIGHFD  364 (494)
T ss_dssp             HHG-----GGCSEEEECSSSSCSBCHHHHHHSCTTCEEEECSSSG
T ss_pred             HHH-----hCCCEEEECCCCHHHHHHHHHHhcCCCcEEEEeCCCC
Confidence            111     46899999999755 55 6888999999999999754

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.82  E-value=2e-08  Score=82.34  Aligned_cols=135  Identities=13%  Similarity=0.148  Sum_probs=84.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHh-cCCCEEEeCCCCc-c-ccccCCCCCcccEEEeCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKS-LGADEVLDYKTPD-G-AALKSPSGRKYDAVIHCAT  141 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~-~g~~~v~~~~~~~-~-~~~~~~~~~~~d~v~d~~g  141 (240)
                      ++++|+|+| +|++|+.+++.++.+|++|+++++. ++.+.+++ +|.....+..+.. . ..+     .++|++++++|
T Consensus       165 ~~~~V~ViG-aG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~-----~~~DvVi~~~g  238 (369)
T 2eez_A          165 APASVVILG-GGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSV-----QHADLLIGAVL  238 (369)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHH-----HHCSEEEECCC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHH-----hCCCEEEECCC
Confidence            568999999 5999999999999999999999965 67777765 7765323322211 1 111     36999999998


Q ss_pred             CCC-------ccccccCCCCCcEEEEeCCCchH------HHHHHHhhheeccceeeeEEEc-----------CCHHHHHH
Q 045248          142 GIP-------WSTFEPNLGTNGKVIDITPGPSA------MLTFALKKLTFSKKQLVPLLLI-----------PKRENLDF  197 (240)
Q Consensus       142 ~~~-------~~~~~~~l~~~G~iv~~g~~~~~------~~~~~~~~~~~~~~~i~~~~~~-----------~~~~~~~~  197 (240)
                      .+.       ....++.++++|.++.++.....      +.+++...+..+++++.+....           .....++.
T Consensus       239 ~~~~~~~~li~~~~l~~mk~gg~iV~v~~~~gg~~d~~ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as~~~~~~~~~~  318 (369)
T 2eez_A          239 VPGAKAPKLVTRDMLSLMKEGAVIVDVAVDQGGCVETIRPTTHAEPTYVVDGVVHYGVANMPGAVPRTSTFALTNQTLPY  318 (369)
T ss_dssp             -------CCSCHHHHTTSCTTCEEEECC-------------------CEETTEEEECCSCSGGGSHHHHHHHHHHHHHHH
T ss_pred             CCccccchhHHHHHHHhhcCCCEEEEEecCCCCCCCcccCCCCCCCEEEECCEEEEeeCCcchhcHHHHHHHHHHHHHHH
Confidence            532       46778889999999999864322      1222333444556655543210           12345677


Q ss_pred             HHHHHHCCc
Q 045248          198 LVKLVKEGK  206 (240)
Q Consensus       198 ~~~~~~~~~  206 (240)
                      +++++.+|.
T Consensus       319 l~~l~~~g~  327 (369)
T 2eez_A          319 VLKLAEKGL  327 (369)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHhcCh
Confidence            788887764

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.82  E-value=5.5e-09  Score=86.05  Aligned_cols=140  Identities=19%  Similarity=0.101  Sum_probs=92.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEE-EeCCCC--------------------ccc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEV-LDYKTP--------------------DGA  123 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v-~~~~~~--------------------~~~  123 (240)
                      ++++|+|+| +|++|+.++++++.+|++|++.++. ++.+.++++|++.+ ++..+.                    ...
T Consensus       171 ~g~~V~ViG-aG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~  249 (384)
T 1l7d_A          171 PPARVLVFG-VGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  249 (384)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHH
Confidence            689999999 8999999999999999998888864 78888888998654 222110                    000


Q ss_pred             cccCCCCCcccEEEeCC---CCCC----ccccccCCCCCcEEEEeCCCchHH--HHHHHhhheeccceeeeEEEcCCHHH
Q 045248          124 ALKSPSGRKYDAVIHCA---TGIP----WSTFEPNLGTNGKVIDITPGPSAM--LTFALKKLTFSKKQLVPLLLIPKREN  194 (240)
Q Consensus       124 ~~~~~~~~~~d~v~d~~---g~~~----~~~~~~~l~~~G~iv~~g~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~  194 (240)
                      .+.+. -.++|+|++++   |.+.    ....++.+++++.++.++......  .+.+...+..+++++.++... ....
T Consensus       250 ~l~~~-~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva~~~gg~~~~~~~~~~~~~~~v~i~g~~~~-p~~~  327 (384)
T 1l7d_A          250 AVLKE-LVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNV-PSRV  327 (384)
T ss_dssp             HHHHH-HTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSSTTCCTTCEEEETTEEEECCSSG-GGGG
T ss_pred             HHHHH-hCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEecCCCCCeecccCCcEEEECCEEEEEeCCC-cchh
Confidence            01111 13699999999   5322    256788999999999998432211  111223445667777775321 2233


Q ss_pred             HHHHHHHHHCCceE
Q 045248          195 LDFLVKLVKEGKLK  208 (240)
Q Consensus       195 ~~~~~~~~~~~~i~  208 (240)
                      .+++.+++.++.+.
T Consensus       328 ~~~a~~l~~~~~~~  341 (384)
T 1l7d_A          328 AADASPLFAKNLLN  341 (384)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHH
Confidence            56688888887643

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.70  E-value=1.3e-08  Score=83.50  Aligned_cols=93  Identities=14%  Similarity=0.159  Sum_probs=69.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHh-cCCCEEEeCCCC-ccccccCCCCCcccEEEeCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKS-LGADEVLDYKTP-DGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~-~g~~~v~~~~~~-~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      ++++|+|+| +|++|+.+++.++.+|++|+++++. ++.+.+++ +|+....+.... +...  ..  .++|+|++|++.
T Consensus       167 ~g~~V~ViG-~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~--~l--~~aDvVi~~~~~  241 (377)
T 2vhw_A          167 EPADVVVIG-AGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEG--AV--KRADLVIGAVLV  241 (377)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHH--HH--HHCSEEEECCCC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHH--HH--cCCCEEEECCCc
Confidence            689999999 6999999999999999999999965 67777766 776532222111 1111  11  368999999975


Q ss_pred             CC-------ccccccCCCCCcEEEEeCC
Q 045248          143 IP-------WSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       143 ~~-------~~~~~~~l~~~G~iv~~g~  163 (240)
                      +.       ....++.++++|.++.++.
T Consensus       242 p~~~t~~li~~~~l~~mk~g~~iV~va~  269 (377)
T 2vhw_A          242 PGAKAPKLVSNSLVAHMKPGAVLVDIAI  269 (377)
T ss_dssp             TTSCCCCCBCHHHHTTSCTTCEEEEGGG
T ss_pred             CCCCCcceecHHHHhcCCCCcEEEEEec
Confidence            32       4567889999999999984

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.63  E-value=1.6e-09  Score=89.87  Aligned_cols=137  Identities=14%  Similarity=0.095  Sum_probs=94.9

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhh---hCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHh
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQS---AGVKLDGSGQQKNILVTAASGGVGHYAVQLAKL   89 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~---~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~   89 (240)
                      .|++++|+......++++|++++.+.++.. ....++|.++...   .+-     .+|++|+|+| +|++|.++++.++.
T Consensus       116 ~G~~~~~~~~~~~~a~~~~k~v~~~~~~~~-~~~s~a~~av~~a~~~~~~-----l~g~~VlIiG-aG~iG~~~a~~l~~  188 (404)
T 1gpj_A          116 LGTLDEALKIVFRRAINLGKRAREETRISE-GAVSIGSAAVELAERELGS-----LHDKTVLVVG-AGEMGKTVAKSLVD  188 (404)
T ss_dssp             HTCCCHHHHHHHHHHHHHHHHHHHHSSTTC-SCCSHHHHHHHHHHHHHSC-----CTTCEEEEES-CCHHHHHHHHHHHH
T ss_pred             cCCchHHHHHHHHHHhhhhccCcchhhhcC-CCccHHHHHHHHHHHHhcc-----ccCCEEEEEC-hHHHHHHHHHHHHH
Confidence            477888988888889999998887776543 2334677666321   111     3789999999 79999999999999


Q ss_pred             CCC-EEEEEeCc-ccH-HHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC-cc--ccccC--C--CCCcEEE
Q 045248           90 GNT-HVTASCGA-RNI-EFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP-WS--TFEPN--L--GTNGKVI  159 (240)
Q Consensus        90 ~g~-~v~~~~~~-~~~-~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~-~~--~~~~~--l--~~~G~iv  159 (240)
                      .|+ +|+++.++ ++. +.++++|++ ++++.+. ...+     .++|+|++++|... +.  ..++.  +  +++|.++
T Consensus       189 ~G~~~V~v~~r~~~ra~~la~~~g~~-~~~~~~l-~~~l-----~~aDvVi~at~~~~~~~~~~~l~~~~lk~r~~~~~v  261 (404)
T 1gpj_A          189 RGVRAVLVANRTYERAVELARDLGGE-AVRFDEL-VDHL-----ARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPIL  261 (404)
T ss_dssp             HCCSEEEEECSSHHHHHHHHHHHTCE-ECCGGGH-HHHH-----HTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEE
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHcCCc-eecHHhH-HHHh-----cCCCEEEEccCCCCceecHHHHHHHHHhccCCCCEE
Confidence            999 99999875 554 677888875 3333211 1111     36999999998643 22  34444  3  5567666


Q ss_pred             EeCC
Q 045248          160 DITP  163 (240)
Q Consensus       160 ~~g~  163 (240)
                      .++.
T Consensus       262 ~vdi  265 (404)
T 1gpj_A          262 IIDI  265 (404)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            6653

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.49  E-value=5.4e-08  Score=80.43  Aligned_cols=138  Identities=14%  Similarity=0.128  Sum_probs=86.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEE-eCCC-------------Ccc-----ccc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVL-DYKT-------------PDG-----AAL  125 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~-~~~~-------------~~~-----~~~  125 (240)
                      ++.+|+|+| +|++|+.++++++.+|++|+++++. ++.+.++++|+..+. +..+             .+.     ..+
T Consensus       171 ~g~~V~ViG-aG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l  249 (401)
T 1x13_A          171 PPAKVMVIG-AGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELF  249 (401)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHH
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHH
Confidence            578999999 8999999999999999999999864 788888999986431 1110             000     011


Q ss_pred             cCCCCCcccEEEeCC---CCC--C-c-cccccCCCCCcEEEEeCCCchHHHHHHH--h-hheeccceeeeEEEcCCHHHH
Q 045248          126 KSPSGRKYDAVIHCA---TGI--P-W-STFEPNLGTNGKVIDITPGPSAMLTFAL--K-KLTFSKKQLVPLLLIPKRENL  195 (240)
Q Consensus       126 ~~~~~~~~d~v~d~~---g~~--~-~-~~~~~~l~~~G~iv~~g~~~~~~~~~~~--~-~~~~~~~~i~~~~~~~~~~~~  195 (240)
                      .+.. .++|+|++++   |.+  . + ...++.++++|.++.++...........  . .+..+++++.+...  .+..+
T Consensus       250 ~e~~-~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~~~~~~p~~~~~gv~i~g~~~--~p~~~  326 (401)
T 1x13_A          250 AAQA-KEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIGYTD--LPGRL  326 (401)
T ss_dssp             HHHH-HHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTTCCTTSEEECTTSCEEECCSC--TGGGS
T ss_pred             HHHh-CCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCcccCCCceEEECCEEEEeeCC--CcccC
Confidence            1111 3589999996   321  2 3 4678899999999999853211111111  1 14456777777532  22333


Q ss_pred             -HHHHHHHHCCce
Q 045248          196 -DFLVKLVKEGKL  207 (240)
Q Consensus       196 -~~~~~~~~~~~i  207 (240)
                       +++.+++.++.+
T Consensus       327 ~~~a~~ll~~~~~  339 (401)
T 1x13_A          327 PTQSSQLYGTNLV  339 (401)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHH
Confidence             336666655543

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.21  E-value=3.8e-06  Score=59.16  Aligned_cols=103  Identities=12%  Similarity=0.096  Sum_probs=69.9

Q ss_pred             HHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccH-HHHHhcCCCEEEeCCCCccccc
Q 045248           48 TAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNI-EFVKSLGADEVLDYKTPDGAAL  125 (240)
Q Consensus        48 ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~-~~~~~~g~~~v~~~~~~~~~~~  125 (240)
                      +++.++ +....     ..+++|+|+| +|++|...++.++..|++|++..++ ++. +.++++|.. +....+. ...+
T Consensus         8 v~~~a~-~~~~~-----~~~~~v~iiG-~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~-~~~~~~~-~~~~   78 (144)
T 3oj0_A            8 IPSIVY-DIVRK-----NGGNKILLVG-NGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYE-YVLINDI-DSLI   78 (144)
T ss_dssp             HHHHHH-HHHHH-----HCCCEEEEEC-CSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCE-EEECSCH-HHHH
T ss_pred             HHHHHH-HHHHh-----ccCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCc-eEeecCH-HHHh
Confidence            556666 33333     4689999999 7999999999999999997777764 554 445677743 2222221 1111


Q ss_pred             cCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248          126 KSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       126 ~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                           .++|+|+.+++..........+++++.++.++.+
T Consensus        79 -----~~~Divi~at~~~~~~~~~~~l~~g~~vid~~~p  112 (144)
T 3oj0_A           79 -----KNNDVIITATSSKTPIVEERSLMPGKLFIDLGNP  112 (144)
T ss_dssp             -----HTCSEEEECSCCSSCSBCGGGCCTTCEEEECCSS
T ss_pred             -----cCCCEEEEeCCCCCcEeeHHHcCCCCEEEEccCC
Confidence                 3589999999975422233778899999988864

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.13  E-value=5.8e-06  Score=65.05  Aligned_cols=94  Identities=17%  Similarity=0.221  Sum_probs=66.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHH----hcCCCEEEeCCCCccccccCCCCCcccEEEeC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVK----SLGADEVLDYKTPDGAALKSPSGRKYDAVIHC  139 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~----~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~  139 (240)
                      +++++||.+| +|+.|..++.+++..|++|++++. ++..+.++    +.|.+.+ .....+....   ....||+|+-.
T Consensus       121 ~~g~rVLDIG-cG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v-~~v~gDa~~l---~d~~FDvV~~~  195 (298)
T 3fpf_A          121 RRGERAVFIG-GGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGV-NVITGDETVI---DGLEFDVLMVA  195 (298)
T ss_dssp             CTTCEEEEEC-CCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSE-EEEESCGGGG---GGCCCSEEEEC
T ss_pred             CCcCEEEEEC-CCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCe-EEEECchhhC---CCCCcCEEEEC
Confidence            8999999999 888777778888888999999995 46666664    3454222 2222221112   24689999976


Q ss_pred             CCCC----CccccccCCCCCcEEEEeCC
Q 045248          140 ATGI----PWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       140 ~g~~----~~~~~~~~l~~~G~iv~~g~  163 (240)
                      ...+    .+..+.+.|+|||+++....
T Consensus       196 a~~~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          196 ALAEPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             TTCSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             CCccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence            5532    37788889999999987754

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.02  E-value=1.1e-05  Score=57.51  Aligned_cols=78  Identities=15%  Similarity=0.109  Sum_probs=56.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH-hcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK-SLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~-~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      .++++|+|+| +|.+|..+++.++..|.+|++++++ ++.+.++ +.|.. ++..+..+...+......++|+||.+++.
T Consensus        17 ~~~~~v~IiG-~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~-~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~   94 (155)
T 2g1u_A           17 QKSKYIVIFG-CGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGF-TVVGDAAEFETLKECGMEKADMVFAFTND   94 (155)
T ss_dssp             CCCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSE-EEESCTTSHHHHHTTTGGGCSEEEECSSC
T ss_pred             cCCCcEEEEC-CCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCc-EEEecCCCHHHHHHcCcccCCEEEEEeCC
Confidence            6789999999 7999999999999999999999864 6666665 56654 33322222222222233579999999997


Q ss_pred             CC
Q 045248          143 IP  144 (240)
Q Consensus       143 ~~  144 (240)
                      ..
T Consensus        95 ~~   96 (155)
T 2g1u_A           95 DS   96 (155)
T ss_dssp             HH
T ss_pred             cH
Confidence            43

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.00  E-value=2.5e-05  Score=64.06  Aligned_cols=96  Identities=24%  Similarity=0.144  Sum_probs=68.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeC----CCC---c-cc-------------
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDY----KTP---D-GA-------------  123 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~----~~~---~-~~-------------  123 (240)
                      ++.+|+|+| +|.+|+.++++++.+|++|++.++. ++++.++++|+..+-..    .+.   . ..             
T Consensus       189 ~~~kV~ViG-~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~  267 (405)
T 4dio_A          189 PAAKIFVMG-AGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAA  267 (405)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHH
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHh
Confidence            678999999 8999999999999999999999864 78899999987522110    000   0 00             


Q ss_pred             cccCCCCCcccEEEeCCCC-----CC--ccccccCCCCCcEEEEeCC
Q 045248          124 ALKSPSGRKYDAVIHCATG-----IP--WSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       124 ~~~~~~~~~~d~v~d~~g~-----~~--~~~~~~~l~~~G~iv~~g~  163 (240)
                      .+.+ .-.+.|+||.|+..     +.  -...++.+++++.||.+..
T Consensus       268 ~l~e-~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~  313 (405)
T 4dio_A          268 LVAE-HIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAV  313 (405)
T ss_dssp             HHHH-HHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTG
T ss_pred             HHHH-HhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeC
Confidence            0000 01468999999742     11  3577889999999998874

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=97.98  E-value=1.1e-05  Score=62.03  Aligned_cols=103  Identities=11%  Similarity=0.057  Sum_probs=69.8

Q ss_pred             HHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHh----cCCCEEEeCCCCccccc
Q 045248           51 QALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKS----LGADEVLDYKTPDGAAL  125 (240)
Q Consensus        51 ~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~----~g~~~v~~~~~~~~~~~  125 (240)
                      ..+ ...++     .++++||..| +| .|..+..+++. +.+|++++. ++..+.+++    .+...-+.....+..  
T Consensus        82 ~~~-~~~~~-----~~~~~vldiG-~G-~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~--  150 (248)
T 2yvl_A           82 YIA-LKLNL-----NKEKRVLEFG-TG-SGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFK--  150 (248)
T ss_dssp             HHH-HHTTC-----CTTCEEEEEC-CT-TSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTT--
T ss_pred             HHH-HhcCC-----CCCCEEEEeC-CC-ccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChh--
Confidence            444 66666     7899999999 66 69999999998 789999995 466666654    343111111111111  


Q ss_pred             cCC-CCCcccEEEeCCCCC--CccccccCCCCCcEEEEeCCC
Q 045248          126 KSP-SGRKYDAVIHCATGI--PWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       126 ~~~-~~~~~d~v~d~~g~~--~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      +.. .+.++|+|+...+..  .+..+.+.|+++|+++.....
T Consensus       151 ~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  192 (248)
T 2yvl_A          151 DAEVPEGIFHAAFVDVREPWHYLEKVHKSLMEGAPVGFLLPT  192 (248)
T ss_dssp             TSCCCTTCBSEEEECSSCGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred             hcccCCCcccEEEECCcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            111 345799999987753  377888999999999887664

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.98  E-value=8.8e-05  Score=62.16  Aligned_cols=88  Identities=16%  Similarity=0.049  Sum_probs=67.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP  144 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~  144 (240)
                      .|++++|+| .|++|..+++.++..|++|+++.++ .+.+.+...|.+ +.+.     ..    .-..+|+++++.|...
T Consensus       264 ~GKtVvVtG-aGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~d-v~~l-----ee----~~~~aDvVi~atG~~~  332 (488)
T 3ond_A          264 AGKVAVVAG-YGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQ-VLTL-----ED----VVSEADIFVTTTGNKD  332 (488)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCG-----GG----TTTTCSEEEECSSCSC
T ss_pred             cCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCc-cCCH-----HH----HHHhcCEEEeCCCChh
Confidence            799999999 7899999999999999999998865 566666666652 2111     11    1136899999999744


Q ss_pred             -cc-ccccCCCCCcEEEEeCCC
Q 045248          145 -WS-TFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       145 -~~-~~~~~l~~~G~iv~~g~~  164 (240)
                       +. ..++.+++++.++.+|..
T Consensus       333 vl~~e~l~~mk~gaiVvNaG~~  354 (488)
T 3ond_A          333 IIMLDHMKKMKNNAIVCNIGHF  354 (488)
T ss_dssp             SBCHHHHTTSCTTEEEEESSST
T ss_pred             hhhHHHHHhcCCCeEEEEcCCC
Confidence             43 378889999999999864

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=97.96  E-value=2.4e-05  Score=64.40  Aligned_cols=103  Identities=15%  Similarity=0.104  Sum_probs=74.6

Q ss_pred             HHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCcccccc
Q 045248           48 TAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALK  126 (240)
Q Consensus        48 ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~  126 (240)
                      ..+.++.+..+..    -.|++++|+| .|.+|..+++.++.+|++|+++.++ .+...+...|.. +.+.    ...+ 
T Consensus       205 s~~~gi~rat~~~----L~GktV~ViG-~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~-v~~L----eeal-  273 (435)
T 3gvp_A          205 SILDGLKRTTDMM----FGGKQVVVCG-YGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFR-LVKL----NEVI-  273 (435)
T ss_dssp             HHHHHHHHHHCCC----CTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCH----HHHT-
T ss_pred             HHHHHHHHhhCce----ecCCEEEEEe-eCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCE-eccH----HHHH-
Confidence            4445554444432    4899999999 9999999999999999999998864 555566666742 2110    1111 


Q ss_pred             CCCCCcccEEEeCCCCCC-cc-ccccCCCCCcEEEEeCCCc
Q 045248          127 SPSGRKYDAVIHCATGIP-WS-TFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus       127 ~~~~~~~d~v~d~~g~~~-~~-~~~~~l~~~G~iv~~g~~~  165 (240)
                          ...|+++.|.|... +. ..++.+++++.++.++...
T Consensus       274 ----~~ADIVi~atgt~~lI~~e~l~~MK~gailINvgrg~  310 (435)
T 3gvp_A          274 ----RQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSN  310 (435)
T ss_dssp             ----TTCSEEEECSSCSCSBCHHHHHHSCTTEEEEECSSTT
T ss_pred             ----hcCCEEEECCCCcccCCHHHHHhcCCCcEEEEecCCC
Confidence                35899999988644 54 7888999999999998654

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.93  E-value=1.2e-05  Score=65.37  Aligned_cols=96  Identities=24%  Similarity=0.202  Sum_probs=68.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHhcCCCEEE-e--------CCCC--------ccccccC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVL-D--------YKTP--------DGAALKS  127 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~v~-~--------~~~~--------~~~~~~~  127 (240)
                      ++.+|+|+| .|.+|+.++++++.+|++|++.++ +++.+.++++|++.+- +        +..+        ....+.+
T Consensus       183 ~~~kV~ViG-~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e  261 (381)
T 3p2y_A          183 KPASALVLG-VGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALED  261 (381)
T ss_dssp             CCCEEEEES-CSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHH
T ss_pred             CCCEEEEEC-chHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHH
Confidence            678999999 899999999999999999999996 4889999999875321 0        0000        0000110


Q ss_pred             CCCCcccEEEeCCCC-----CC--ccccccCCCCCcEEEEeCC
Q 045248          128 PSGRKYDAVIHCATG-----IP--WSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       128 ~~~~~~d~v~d~~g~-----~~--~~~~~~~l~~~G~iv~~g~  163 (240)
                       .-.+.|+||.++.-     +.  -...++.+++++.++.+..
T Consensus       262 -~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~  303 (381)
T 3p2y_A          262 -AITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAG  303 (381)
T ss_dssp             -HHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTG
T ss_pred             -HHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeC
Confidence             11569999999732     11  3577888999999998874

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.90  E-value=1.9e-05  Score=53.21  Aligned_cols=75  Identities=25%  Similarity=0.292  Sum_probs=51.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCC-CEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGN-THVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g-~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      .+.+|+|+|+ |.+|..+++.+...| .+|++++++ ++.+.+...+...+. .+-.+...+...- .++|+||++++..
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~-~~~d~vi~~~~~~   80 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQ-VDAKDEAGLAKAL-GGFDAVISAAPFF   80 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEE-CCTTCHHHHHHHT-TTCSEEEECSCGG
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEE-ecCCCHHHHHHHH-cCCCEEEECCCch
Confidence            5678999996 999999999999999 699888875 677777666654322 2211211111111 3699999999754

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.84  E-value=0.00015  Score=55.13  Aligned_cols=74  Identities=20%  Similarity=0.180  Sum_probs=52.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      .+.+|||+||+|++|..+++.+...|++|++++++ ++.+.+.+.+...++..+-. ....+..  .++|+||.++|.
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~-~~~~~~~--~~~D~vi~~ag~   94 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLE-EDFSHAF--ASIDAVVFAAGS   94 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTT-SCCGGGG--TTCSEEEECCCC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccH-HHHHHHH--cCCCEEEECCCC
Confidence            67899999999999999999999999999999975 67777766665223322111 1111111  379999999985

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.81  E-value=6.4e-05  Score=59.43  Aligned_cols=90  Identities=16%  Similarity=0.214  Sum_probs=67.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP  144 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~  144 (240)
                      ++++|+|+| .|.+|..+++.++.+|++|++..+. ++.+.++++|+. .++..+. ...+     .+.|+|+.++....
T Consensus       154 ~g~~v~IiG-~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-~~~~~~l-~~~l-----~~aDvVi~~~p~~~  225 (293)
T 3d4o_A          154 HGANVAVLG-LGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGME-PFHISKA-AQEL-----RDVDVCINTIPALV  225 (293)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSE-EEEGGGH-HHHT-----TTCSEEEECCSSCC
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCe-ecChhhH-HHHh-----cCCCEEEECCChHH
Confidence            789999999 8999999999999999999999875 566666778864 3322110 1111     36899999997544


Q ss_pred             c-cccccCCCCCcEEEEeCC
Q 045248          145 W-STFEPNLGTNGKVIDITP  163 (240)
Q Consensus       145 ~-~~~~~~l~~~G~iv~~g~  163 (240)
                      + ...++.+++++.++.++.
T Consensus       226 i~~~~l~~mk~~~~lin~ar  245 (293)
T 3d4o_A          226 VTANVLAEMPSHTFVIDLAS  245 (293)
T ss_dssp             BCHHHHHHSCTTCEEEECSS
T ss_pred             hCHHHHHhcCCCCEEEEecC
Confidence            2 356677899999999885

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=97.79  E-value=4.9e-05  Score=59.08  Aligned_cols=94  Identities=18%  Similarity=0.124  Sum_probs=66.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhC-CCEEEEEeCc-ccHHHHHhcCCC-EEEeCCCCccccccCCCCCcccEEEeCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLG-NTHVTASCGA-RNIEFVKSLGAD-EVLDYKTPDGAALKSPSGRKYDAVIHCAT  141 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~-g~~v~~~~~~-~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~~~~d~v~d~~g  141 (240)
                      .++.+||.+| +|. |..+..+++.. |.+|++++.+ +..+.+++.+.. .++..+...   .. .....||+|+..-.
T Consensus        84 ~~~~~vLdiG-~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~---~~-~~~~~fD~v~~~~~  157 (269)
T 1p91_A           84 DKATAVLDIG-CGE-GYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHR---LP-FSDTSMDAIIRIYA  157 (269)
T ss_dssp             TTCCEEEEET-CTT-STTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTS---CS-BCTTCEEEEEEESC
T ss_pred             CCCCEEEEEC-CCC-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhh---CC-CCCCceeEEEEeCC
Confidence            4778999999 777 98899999986 6799999964 677777766543 222221111   11 12357999996554


Q ss_pred             CCCccccccCCCCCcEEEEeCCC
Q 045248          142 GIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       142 ~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      ...+..+.+.|+|+|+++.....
T Consensus       158 ~~~l~~~~~~L~pgG~l~~~~~~  180 (269)
T 1p91_A          158 PCKAEELARVVKPGGWVITATPG  180 (269)
T ss_dssp             CCCHHHHHHHEEEEEEEEEEEEC
T ss_pred             hhhHHHHHHhcCCCcEEEEEEcC
Confidence            55688899999999998877643

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.78  E-value=0.00015  Score=57.54  Aligned_cols=92  Identities=10%  Similarity=0.131  Sum_probs=68.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      -++++++|+| .|.+|..+++.++.+|++|++..+. ++.+.++++|.. +++..+. ...+     .+.|+|+.+++..
T Consensus       155 l~g~~v~IiG-~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-~~~~~~l-~~~l-----~~aDvVi~~~p~~  226 (300)
T 2rir_A          155 IHGSQVAVLG-LGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLV-PFHTDEL-KEHV-----KDIDICINTIPSM  226 (300)
T ss_dssp             STTSEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCE-EEEGGGH-HHHS-----TTCSEEEECCSSC
T ss_pred             CCCCEEEEEc-ccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCe-EEchhhH-HHHh-----hCCCEEEECCChh
Confidence            3789999999 8999999999999999999999875 566666677753 3322110 1111     4689999999864


Q ss_pred             Cc-cccccCCCCCcEEEEeCCC
Q 045248          144 PW-STFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       144 ~~-~~~~~~l~~~G~iv~~g~~  164 (240)
                      .+ ...++.+++++.++.++..
T Consensus       227 ~i~~~~~~~mk~g~~lin~a~g  248 (300)
T 2rir_A          227 ILNQTVLSSMTPKTLILDLASR  248 (300)
T ss_dssp             CBCHHHHTTSCTTCEEEECSST
T ss_pred             hhCHHHHHhCCCCCEEEEEeCC
Confidence            43 3567789999999998853

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=97.77  E-value=0.00027  Score=54.19  Aligned_cols=76  Identities=20%  Similarity=0.279  Sum_probs=53.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcc---cHHHHHhcCCCEEE---eCCCCccccccCCCCCcccEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGAR---NIEFVKSLGADEVL---DYKTPDGAALKSPSGRKYDAVIHC  139 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~---~~~~~~~~g~~~v~---~~~~~~~~~~~~~~~~~~d~v~d~  139 (240)
                      .|+++||+||++|+|.+.++.+...|++|+.+.++.   ..+.+++.|.....   |..++. .........++|+.+++
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d~~-~v~~~~~~g~iDiLVNN   86 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPDETLDIIAKDGGNASALLIDFADPL-AAKDSFTDAGFDILVNN   86 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTSTT-TTTTSSTTTCCCEEEEC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCCHH-HHHHHHHhCCCCEEEEC
Confidence            789999999999999999999999999999998642   34555667754322   222222 11112233579999999


Q ss_pred             CCC
Q 045248          140 ATG  142 (240)
Q Consensus       140 ~g~  142 (240)
                      .|-
T Consensus        87 AGi   89 (247)
T 4hp8_A           87 AGI   89 (247)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            983

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.69  E-value=0.00012  Score=53.46  Aligned_cols=95  Identities=11%  Similarity=0.018  Sum_probs=64.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhC-CCEEEEEeCc-ccHHHHHhcCCCEEE-eCCCCccccccCC-CCCcccEEEeCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLG-NTHVTASCGA-RNIEFVKSLGADEVL-DYKTPDGAALKSP-SGRKYDAVIHCAT  141 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~-g~~v~~~~~~-~~~~~~~~~g~~~v~-~~~~~~~~~~~~~-~~~~~d~v~d~~g  141 (240)
                      .+++|+|+| .|.+|..+++.++.. |.+|++++++ ++.+.+++.|...+. +..+  ...+... +-.++|+++.+++
T Consensus        38 ~~~~v~IiG-~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~--~~~l~~~~~~~~ad~vi~~~~  114 (183)
T 3c85_A           38 GHAQVLILG-MGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATD--PDFWERILDTGHVKLVLLAMP  114 (183)
T ss_dssp             TTCSEEEEC-CSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTC--HHHHHTBCSCCCCCEEEECCS
T ss_pred             CCCcEEEEC-CCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCC--HHHHHhccCCCCCCEEEEeCC
Confidence            467899999 899999999999998 9999999975 777888888876443 2222  2222222 3457999999998


Q ss_pred             CCC-c---cccccCCCCCcEEEEeCC
Q 045248          142 GIP-W---STFEPNLGTNGKVIDITP  163 (240)
Q Consensus       142 ~~~-~---~~~~~~l~~~G~iv~~g~  163 (240)
                      +.. .   -...+.+.+..+++....
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~ii~~~~  140 (183)
T 3c85_A          115 HHQGNQTALEQLQRRNYKGQIAAIAE  140 (183)
T ss_dssp             SHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred             ChHHHHHHHHHHHHHCCCCEEEEEEC
Confidence            632 1   123344455566665443

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.67  E-value=0.00024  Score=49.53  Aligned_cols=97  Identities=7%  Similarity=-0.021  Sum_probs=67.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      +-.++++|+| .|.+|..+++.++..|.+|++++++ ++.+.+++.|... +..+..+...++..+-.++|+++-+++..
T Consensus         5 ~~~~~viIiG-~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~-i~gd~~~~~~l~~a~i~~ad~vi~~~~~~   82 (140)
T 3fwz_A            5 DICNHALLVG-YGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRA-VLGNAANEEIMQLAHLECAKWLILTIPNG   82 (140)
T ss_dssp             CCCSCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEE-EESCTTSHHHHHHTTGGGCSEEEECCSCH
T ss_pred             cCCCCEEEEC-cCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCE-EECCCCCHHHHHhcCcccCCEEEEECCCh
Confidence            4567899999 8999999999999999999999975 7888888888754 33332222333333446789999999864


Q ss_pred             C----ccccccCCCCCcEEEEeCC
Q 045248          144 P----WSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       144 ~----~~~~~~~l~~~G~iv~~g~  163 (240)
                      .    .-...+.+.+..+++..-.
T Consensus        83 ~~n~~~~~~a~~~~~~~~iiar~~  106 (140)
T 3fwz_A           83 YEAGEIVASARAKNPDIEIIARAH  106 (140)
T ss_dssp             HHHHHHHHHHHHHCSSSEEEEEES
T ss_pred             HHHHHHHHHHHHHCCCCeEEEEEC
Confidence            3    1123444556666654433

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.65  E-value=0.00015  Score=59.85  Aligned_cols=102  Identities=15%  Similarity=0.009  Sum_probs=72.8

Q ss_pred             HHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccC
Q 045248           49 AHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKS  127 (240)
Q Consensus        49 a~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~  127 (240)
                      .+.++.+..+..    -.|++++|+| .|.+|..+++.++.+|++|+++..+ .+...+...|.. +.+.    ...+  
T Consensus       233 lvdgI~Ratg~~----L~GKTVgVIG-~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~-vv~L----eElL--  300 (464)
T 3n58_A          233 LVDGIRRGTDVM----MAGKVAVVCG-YGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFE-VVTL----DDAA--  300 (464)
T ss_dssp             HHHHHHHHHCCC----CTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCE-ECCH----HHHG--
T ss_pred             HHHHHHHhcCCc----ccCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCce-eccH----HHHH--
Confidence            344454444432    4899999999 9999999999999999999999864 444555566653 2211    1112  


Q ss_pred             CCCCcccEEEeCCCCCC-c-cccccCCCCCcEEEEeCCCc
Q 045248          128 PSGRKYDAVIHCATGIP-W-STFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus       128 ~~~~~~d~v~d~~g~~~-~-~~~~~~l~~~G~iv~~g~~~  165 (240)
                         ...|+|+.+.|... + ...+..+++++.++.+|...
T Consensus       301 ---~~ADIVv~atgt~~lI~~e~l~~MK~GAILINvGRgd  337 (464)
T 3n58_A          301 ---STADIVVTTTGNKDVITIDHMRKMKDMCIVGNIGHFD  337 (464)
T ss_dssp             ---GGCSEEEECCSSSSSBCHHHHHHSCTTEEEEECSSST
T ss_pred             ---hhCCEEEECCCCccccCHHHHhcCCCCeEEEEcCCCC
Confidence               35899999998654 3 47788899999999998543

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.59  E-value=0.0013  Score=54.25  Aligned_cols=89  Identities=12%  Similarity=0.003  Sum_probs=67.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP  144 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~  144 (240)
                      .|++|+|+| .|.+|..+++.++.+|++|++++++ .+...+...|...+ +   . ...+     ...|+++.+.+...
T Consensus       210 ~GktVgIiG-~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~-s---L-~eal-----~~ADVVilt~gt~~  278 (436)
T 3h9u_A          210 AGKTACVCG-YGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVL-L---V-EDVV-----EEAHIFVTTTGNDD  278 (436)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-C---H-HHHT-----TTCSEEEECSSCSC
T ss_pred             cCCEEEEEe-eCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeec-C---H-HHHH-----hhCCEEEECCCCcC
Confidence            799999999 9999999999999999999998865 45556666775321 1   0 1112     35899999888644


Q ss_pred             -cc-ccccCCCCCcEEEEeCCCc
Q 045248          145 -WS-TFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus       145 -~~-~~~~~l~~~G~iv~~g~~~  165 (240)
                       +. ..++.+++++.++.++...
T Consensus       279 iI~~e~l~~MK~gAIVINvgRg~  301 (436)
T 3h9u_A          279 IITSEHFPRMRDDAIVCNIGHFD  301 (436)
T ss_dssp             SBCTTTGGGCCTTEEEEECSSSG
T ss_pred             ccCHHHHhhcCCCcEEEEeCCCC
Confidence             43 6788899999999998654

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=97.55  E-value=0.00024  Score=55.66  Aligned_cols=77  Identities=19%  Similarity=0.150  Sum_probs=49.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-cc-HH----HHHhcCCCE-EE--eCCCCc-c-ccccC--CCCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RN-IE----FVKSLGADE-VL--DYKTPD-G-AALKS--PSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~-~~----~~~~~g~~~-v~--~~~~~~-~-~~~~~--~~~~~  132 (240)
                      .++++||+||+|++|.++++.+...|++|+.+.++ ++ .+    .+++.|... .+  |..+.. . ..++.  ..-.+
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~  107 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGK  107 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999999999999998864 22 22    234445432 22  222211 1 11111  01136


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.++|.
T Consensus       108 iD~lv~~Ag~  117 (283)
T 1g0o_A          108 LDIVCSNSGV  117 (283)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999984

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=97.52  E-value=0.00042  Score=53.13  Aligned_cols=75  Identities=17%  Similarity=0.219  Sum_probs=51.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCCEEEeCCC-Ccc----ccccCCCCCcccEEE
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGADEVLDYKT-PDG----AALKSPSGRKYDAVI  137 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~~v~~~~~-~~~----~~~~~~~~~~~d~v~  137 (240)
                      .+++++||+||+|++|..+++.+...|++|+.++++ ++.+.+ +++.....+...+ .+.    ..++..  .++|+++
T Consensus        12 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~id~li   89 (249)
T 3f9i_A           12 LTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKT--SNLDILV   89 (249)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTC--SCCSEEE
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhc--CCCCEEE
Confidence            588999999999999999999999999999999975 454444 3444332222111 111    112222  4699999


Q ss_pred             eCCC
Q 045248          138 HCAT  141 (240)
Q Consensus       138 d~~g  141 (240)
                      .++|
T Consensus        90 ~~Ag   93 (249)
T 3f9i_A           90 CNAG   93 (249)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9998

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.51  E-value=0.00017  Score=50.14  Aligned_cols=76  Identities=17%  Similarity=0.097  Sum_probs=51.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      ++++++|+| +|.+|..+++.+...|.+|++++++ ++.+.+++.+.. ++..+..+...+....-.++|+++.+++..
T Consensus         5 ~~~~v~I~G-~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~-~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~   81 (144)
T 2hmt_A            5 KNKQFAVIG-LGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATH-AVIANATEENELLSLGIRNFEYVIVAIGAN   81 (144)
T ss_dssp             -CCSEEEEC-CSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSE-EEECCTTCHHHHHTTTGGGCSEEEECCCSC
T ss_pred             cCCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCE-EEEeCCCCHHHHHhcCCCCCCEEEECCCCc
Confidence            456799999 5999999999999999998888865 555555555543 332222222222222235799999999864

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=97.51  E-value=0.00041  Score=52.97  Aligned_cols=75  Identities=23%  Similarity=0.214  Sum_probs=51.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCCEEEeCCCCccc----cccCCCCCcccEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGADEVLDYKTPDGA----ALKSPSGRKYDAVIHC  139 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~~v~~~~~~~~~----~~~~~~~~~~d~v~d~  139 (240)
                      +++++||+||+|++|..+++.+...|++|+++.++ ++.+.+ +++....++..+-.+..    .++  .-+++|++|.+
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~~~id~vi~~   83 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALG--SVGPVDLLVNN   83 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHT--TCCCCCEEEEC
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCCEEEEeCCCHHHHHHHHH--HcCCCCEEEEC
Confidence            67899999999999999999999999999999875 444433 33432333322222211    122  22469999999


Q ss_pred             CCC
Q 045248          140 ATG  142 (240)
Q Consensus       140 ~g~  142 (240)
                      +|.
T Consensus        84 Ag~   86 (244)
T 3d3w_A           84 AAV   86 (244)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            984

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.46  E-value=0.00059  Score=47.46  Aligned_cols=75  Identities=19%  Similarity=0.149  Sum_probs=53.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      ..++++|+| .|.+|..+++.+...|.+|++++++ ++.+.+++.|.. ++..+..+...++...-.++|+++-+++.
T Consensus         5 ~~~~v~I~G-~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~-~~~gd~~~~~~l~~~~~~~~d~vi~~~~~   80 (141)
T 3llv_A            5 GRYEYIVIG-SEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFD-AVIADPTDESFYRSLDLEGVSAVLITGSD   80 (141)
T ss_dssp             -CCSEEEEC-CSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCE-EEECCTTCHHHHHHSCCTTCSEEEECCSC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCc-EEECCCCCHHHHHhCCcccCCEEEEecCC
Confidence            456899999 6999999999999999999999975 777778777754 33322222222332334578999998885

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=97.45  E-value=0.00056  Score=53.89  Aligned_cols=98  Identities=13%  Similarity=0.175  Sum_probs=62.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-c-cHHH----HHhcCCCEE-E--eCCCCc--cccccC--CCCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-R-NIEF----VKSLGADEV-L--DYKTPD--GAALKS--PSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~-~~~~----~~~~g~~~v-~--~~~~~~--~~~~~~--~~~~~  132 (240)
                      .++++||+||+|++|.++++.+...|++|+.+.++ + ..+.    .++.|.... +  |..+..  ...++.  ....+
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  125 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLGS  125 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            67899999999999999999999999999998864 2 2222    234454322 2  222221  111111  01146


Q ss_pred             ccEEEeCCCCC----Cc-----------------------cccccCCCCCcEEEEeCC
Q 045248          133 YDAVIHCATGI----PW-----------------------STFEPNLGTNGKVIDITP  163 (240)
Q Consensus       133 ~d~v~d~~g~~----~~-----------------------~~~~~~l~~~G~iv~~g~  163 (240)
                      +|+++.++|..    .+                       +.++..++++|+|+.++.
T Consensus       126 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS  183 (291)
T 3ijr_A          126 LNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTAS  183 (291)
T ss_dssp             CCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred             CCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEec
Confidence            99999998732    11                       123445677899998874

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.41  E-value=0.00063  Score=52.27  Aligned_cols=73  Identities=26%  Similarity=0.341  Sum_probs=50.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEEE-eCCCCc-cccccCCCCCcccEEEeCCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVL-DYKTPD-GAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~-~~~~~~-~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      -.++++||+||+|++|..+++.+...|++|+.++++.  +.+++++....+ |. ..+ ....+...  ++|+++.++|.
T Consensus        17 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~D~-~~~~~~~~~~~~--~iD~lv~~Ag~   91 (249)
T 1o5i_A           17 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE--ELLKRSGHRYVVCDL-RKDLDLLFEKVK--EVDILVLNAGG   91 (249)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHTCSEEEECCT-TTCHHHHHHHSC--CCSEEEECCCC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH--HHHHhhCCeEEEeeH-HHHHHHHHHHhc--CCCEEEECCCC
Confidence            4788999999999999999999999999999998753  334455532222 22 112 11222221  79999999984

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=97.41  E-value=0.00047  Score=55.66  Aligned_cols=96  Identities=16%  Similarity=0.133  Sum_probs=66.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCC-----Ccc-------cccc--CCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKT-----PDG-------AALK--SPS  129 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~-----~~~-------~~~~--~~~  129 (240)
                      -.|++|.|.| .|.+|..+++.++.+|++|++.+.+ ++.++++++|+..+ +..+     .+.       ..+.  ...
T Consensus       173 L~GktV~I~G-~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~A~~~~I~~~~~~  250 (355)
T 1c1d_A          173 LDGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCAMGGVITTEVAR  250 (355)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECSCSCCBCHHHHH
T ss_pred             CCCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEe-ChHHhhcCccceecHhHHHhhcCHHHHh
Confidence            3899999999 9999999999999999999976654 44666777876433 2111     010       0110  001


Q ss_pred             CCcccEEEeCCCCCCcc-ccccCCCCCcEEEEeC
Q 045248          130 GRKYDAVIHCATGIPWS-TFEPNLGTNGKVIDIT  162 (240)
Q Consensus       130 ~~~~d~v~d~~g~~~~~-~~~~~l~~~G~iv~~g  162 (240)
                      .-+.++|+++++++... .+.+.|+.+|.++..+
T Consensus       251 ~lk~~iVie~AN~p~t~~eA~~~L~~~gIlv~Pd  284 (355)
T 1c1d_A          251 TLDCSVVAGAANNVIADEAASDILHARGILYAPD  284 (355)
T ss_dssp             HCCCSEECCSCTTCBCSHHHHHHHHHTTCEECCH
T ss_pred             hCCCCEEEECCCCCCCCHHHHHHHHhCCEEEECC
Confidence            23578999999877643 7778888888877654

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=97.41  E-value=0.001  Score=53.25  Aligned_cols=77  Identities=17%  Similarity=0.092  Sum_probs=49.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHh-----cCCC-EEE-eCCCCccccccCCCCCcccEE
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKS-----LGAD-EVL-DYKTPDGAALKSPSGRKYDAV  136 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~-----~g~~-~v~-~~~~~~~~~~~~~~~~~~d~v  136 (240)
                      .++.+|||+||+|.+|..+++.+...|++|++++++ ++.+.+.+     .+.. ..+ ..+-.+...+.... .++|+|
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~-~~~d~v   87 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVI-KGAAGV   87 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTT-TTCSEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHH-cCCCEE
Confidence            467899999999999999999888899999999975 44333322     1221 222 11111111222111 279999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      |.+++.
T Consensus        88 ih~A~~   93 (342)
T 1y1p_A           88 AHIASV   93 (342)
T ss_dssp             EECCCC
T ss_pred             EEeCCC
Confidence            999984

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=97.39  E-value=0.0013  Score=51.86  Aligned_cols=98  Identities=16%  Similarity=0.165  Sum_probs=61.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-c--cHHH----HHhcCCCEEEeCCC-Cccc----cccC--CCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-R--NIEF----VKSLGADEVLDYKT-PDGA----ALKS--PSGR  131 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~--~~~~----~~~~g~~~v~~~~~-~~~~----~~~~--~~~~  131 (240)
                      .++++||+||+|++|.++++.+...|++|+.+.+. +  +.+.    +++.|....+-..+ .+..    .++.  ..-.
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  127 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREALG  127 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            67899999999999999999999999999988754 2  2222    23455433221111 1111    1111  0114


Q ss_pred             cccEEEeCCCCCC----c-----------------------cccccCCCCCcEEEEeCC
Q 045248          132 KYDAVIHCATGIP----W-----------------------STFEPNLGTNGKVIDITP  163 (240)
Q Consensus       132 ~~d~v~d~~g~~~----~-----------------------~~~~~~l~~~G~iv~~g~  163 (240)
                      ++|+++.+.|...    +                       +.++..++++|+|+.++.
T Consensus       128 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS  186 (294)
T 3r3s_A          128 GLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSS  186 (294)
T ss_dssp             CCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred             CCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence            7999999998411    1                       123345677899998874

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=97.39  E-value=0.00045  Score=53.87  Aligned_cols=98  Identities=16%  Similarity=0.183  Sum_probs=65.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH-HHhcCCCEE-E--eCCCCc--cccccC--CCCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF-VKSLGADEV-L--DYKTPD--GAALKS--PSGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~-~~~~g~~~v-~--~~~~~~--~~~~~~--~~~~~~d~v  136 (240)
                      +|+.+||+||++|+|.+.++.+...|++|+.+.++ ++.+. ++++|.... +  |-.+++  ...++.  ..-+++|++
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiL  107 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGRIDVL  107 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCEEEE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            78999999999999999999999999999999975 55443 466764322 2  222222  111111  112469999


Q ss_pred             EeCCCCCC--------------------------ccccccCCCCCcEEEEeCC
Q 045248          137 IHCATGIP--------------------------WSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       137 ~d~~g~~~--------------------------~~~~~~~l~~~G~iv~~g~  163 (240)
                      ++++|...                          .+.++..++++|+|+.++.
T Consensus       108 VNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS  160 (273)
T 4fgs_A          108 FVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGS  160 (273)
T ss_dssp             EECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECC
T ss_pred             EECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEee
Confidence            99998321                          1124446778899998863

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.37  E-value=0.00044  Score=53.32  Aligned_cols=76  Identities=16%  Similarity=0.159  Sum_probs=50.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeC--CCCc--cccccC--CCCCcccEEEe
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDY--KTPD--GAALKS--PSGRKYDAVIH  138 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~--~~~~--~~~~~~--~~~~~~d~v~d  138 (240)
                      .++++||+||+|++|.++++.+...|++|+.+.++ ++.+..++++. ..+..  .+..  ...++.  ...+++|+++.
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g~iD~lv~   83 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAIGG-AFFQVDLEDERERVRFVEEAAYALGRVDVLVN   83 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHHTC-EEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHhhC-CEEEeeCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            57899999999999999999999999999999865 44333344442 33322  2211  111111  01146999999


Q ss_pred             CCCC
Q 045248          139 CATG  142 (240)
Q Consensus       139 ~~g~  142 (240)
                      ++|.
T Consensus        84 ~Ag~   87 (256)
T 2d1y_A           84 NAAI   87 (256)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9984

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=97.36  E-value=0.00047  Score=52.90  Aligned_cols=77  Identities=21%  Similarity=0.180  Sum_probs=51.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHH-HHHhcCCCEEE---eCCCCc--cccccCC--CCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIE-FVKSLGADEVL---DYKTPD--GAALKSP--SGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~-~~~~~g~~~v~---~~~~~~--~~~~~~~--~~~~~d~v  136 (240)
                      .++++||+||+|++|.++++.+...|++|+.+.++ ++.+ ..++++.....   |..+..  ...++..  .-.++|++
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l   84 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQALTGGIDIL   84 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHHSCCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEE
Confidence            67899999999999999999999999999999875 4433 33455544222   112211  1111110  11369999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      +.++|.
T Consensus        85 v~nAg~   90 (247)
T 3rwb_A           85 VNNASI   90 (247)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999984

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.36  E-value=0.0012  Score=51.65  Aligned_cols=34  Identities=21%  Similarity=0.118  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      .++++||+||+|++|..+++.+...|++|+.+++
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~   42 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGADIILFDI   42 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcc
Confidence            6789999999999999999999999999999875

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=97.36  E-value=0.0008  Score=51.27  Aligned_cols=75  Identities=21%  Similarity=0.146  Sum_probs=50.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCCEEEeCCCCccc----cccCCCCCcccEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGADEVLDYKTPDGA----ALKSPSGRKYDAVIHC  139 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~~v~~~~~~~~~----~~~~~~~~~~d~v~d~  139 (240)
                      +++++||+||+|++|..+++.+...|++|++++++ ++.+.+ ++.....++..+-.+..    .++  .-.++|+++.+
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~~~id~vi~~   83 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALG--GIGPVDLLVNN   83 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHT--TCCCCSEEEEC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCCcEEecCCCHHHHHHHHH--HcCCCCEEEEC
Confidence            67899999999999999999999999999999875 444333 33322233322212211    122  22468999999


Q ss_pred             CCC
Q 045248          140 ATG  142 (240)
Q Consensus       140 ~g~  142 (240)
                      +|.
T Consensus        84 Ag~   86 (244)
T 1cyd_A           84 AAL   86 (244)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            983

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=97.35  E-value=0.00011  Score=55.54  Aligned_cols=35  Identities=14%  Similarity=0.191  Sum_probs=32.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .++++||+||+|++|.++++.+...|++|+.+.+.
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~   39 (223)
T 3uce_A            5 DKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQ   39 (223)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCC
Confidence            57899999999999999999999999999999865

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.34  E-value=0.0021  Score=47.80  Aligned_cols=98  Identities=14%  Similarity=0.133  Sum_probs=65.3

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH----hcCCC---EEEeCCCCcccccc
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK----SLGAD---EVLDYKTPDGAALK  126 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~----~~g~~---~v~~~~~~~~~~~~  126 (240)
                      ....+     .++++||-+| +|. |..++.+++. +.+|++++.+ +..+.++    ..|..   .++..+..  ....
T Consensus        49 ~~l~~-----~~~~~vLDlG-cG~-G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~--~~~~  118 (204)
T 3njr_A           49 AALAP-----RRGELLWDIG-GGS-GSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAP--AALA  118 (204)
T ss_dssp             HHHCC-----CTTCEEEEET-CTT-CHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTT--GGGT
T ss_pred             HhcCC-----CCCCEEEEec-CCC-CHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchh--hhcc
Confidence            55666     7899999999 664 8888888888 8899999954 5555553    45543   22222111  1111


Q ss_pred             CCCCCcccEEEeCCCCC--CccccccCCCCCcEEEEeCCC
Q 045248          127 SPSGRKYDAVIHCATGI--PWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       127 ~~~~~~~d~v~d~~g~~--~~~~~~~~l~~~G~iv~~g~~  164 (240)
                        ....||+|+...+..  .+..+.+.|+++|+++.....
T Consensus       119 --~~~~~D~v~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  156 (204)
T 3njr_A          119 --DLPLPEAVFIGGGGSQALYDRLWEWLAPGTRIVANAVT  156 (204)
T ss_dssp             --TSCCCSEEEECSCCCHHHHHHHHHHSCTTCEEEEEECS
T ss_pred             --cCCCCCEEEECCcccHHHHHHHHHhcCCCcEEEEEecC
Confidence              124699999765532  367778889999999876654

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=97.34  E-value=0.00056  Score=52.53  Aligned_cols=75  Identities=12%  Similarity=0.081  Sum_probs=50.8

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEE-E--eCCCCc--cccccC--CCCCcccEEEe
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEV-L--DYKTPD--GAALKS--PSGRKYDAVIH  138 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v-~--~~~~~~--~~~~~~--~~~~~~d~v~d  138 (240)
                      +++|||+||++|+|.+.++.+...|++|+.+.++ ++.+.+.+.+.... +  |-.+++  ...++.  ..-+++|++++
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDiLVN   81 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLVN   81 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            3789999999999999999999999999999975 55555554444322 2  222221  111111  11247999999


Q ss_pred             CCC
Q 045248          139 CAT  141 (240)
Q Consensus       139 ~~g  141 (240)
                      ++|
T Consensus        82 NAG   84 (247)
T 3ged_A           82 NAC   84 (247)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            998

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.33  E-value=0.00055  Score=52.44  Aligned_cols=76  Identities=21%  Similarity=0.297  Sum_probs=50.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCCEEE--eCCCCc-c-ccccC--CCCCcccEEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGADEVL--DYKTPD-G-AALKS--PSGRKYDAVI  137 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~~v~--~~~~~~-~-~~~~~--~~~~~~d~v~  137 (240)
                      .+++++|+||+|++|.++++.+...|++|+.+.++ ++.+.+ +++|. ..+  |..+.+ . ..++.  ..-+++|+++
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv   82 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGA-HPVVMDVADPASVERGFAEALAHLGRLDGVV   82 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTC-EEEECCTTCHHHHHHHHHHHHHHHSSCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCC-EEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            56899999999999999999999999999999875 444433 44553 333  222221 1 11111  0113699999


Q ss_pred             eCCCC
Q 045248          138 HCATG  142 (240)
Q Consensus       138 d~~g~  142 (240)
                      .++|.
T Consensus        83 n~Ag~   87 (245)
T 1uls_A           83 HYAGI   87 (245)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            99983

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=97.33  E-value=0.00092  Score=51.74  Aligned_cols=77  Identities=14%  Similarity=0.162  Sum_probs=48.6

Q ss_pred             CCCeEEEEcCCch--HHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCC--CEEE--eCCCCc--cccccCC--CC
Q 045248           66 QQKNILVTAASGG--VGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGA--DEVL--DYKTPD--GAALKSP--SG  130 (240)
Q Consensus        66 ~g~~vlV~G~~g~--vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~--~~v~--~~~~~~--~~~~~~~--~~  130 (240)
                      .++++||+||+|.  +|.++++.+...|++|+.+.++ +..+.+    ++.+.  ...+  |..+.+  ...++..  ..
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQV   85 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHHh
Confidence            6789999999955  9999999999999999999865 333333    33333  2222  222222  1111111  11


Q ss_pred             CcccEEEeCCCC
Q 045248          131 RKYDAVIHCATG  142 (240)
Q Consensus       131 ~~~d~v~d~~g~  142 (240)
                      .++|+++.++|.
T Consensus        86 g~id~li~~Ag~   97 (266)
T 3oig_A           86 GVIHGIAHCIAF   97 (266)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCeeEEEEcccc
Confidence            369999999984

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=97.33  E-value=0.00072  Score=53.15  Aligned_cols=75  Identities=19%  Similarity=0.217  Sum_probs=51.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCC-EEE--eCCCCc--cccccCCCCCcccEEEe
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGAD-EVL--DYKTPD--GAALKSPSGRKYDAVIH  138 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~-~v~--~~~~~~--~~~~~~~~~~~~d~v~d  138 (240)
                      .+++++|+||+|++|.++++.+...|++|+.++++ ++.+.+ ++++.. ..+  |..+..  ...++..  .++|+++.
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~--~~iD~lv~   92 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMAGQVEVRELDLQDLSSVRRFADGV--SGADVLIN   92 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTC--CCEEEEEE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhc--CCCCEEEE
Confidence            68899999999999999999999999999999975 454444 344432 222  222211  1112222  47999999


Q ss_pred             CCCC
Q 045248          139 CATG  142 (240)
Q Consensus       139 ~~g~  142 (240)
                      ++|.
T Consensus        93 nAg~   96 (291)
T 3rd5_A           93 NAGI   96 (291)
T ss_dssp             CCCC
T ss_pred             CCcC
Confidence            9983

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=97.32  E-value=0.00093  Score=50.69  Aligned_cols=76  Identities=17%  Similarity=0.150  Sum_probs=49.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-H----hcCCCEE-E--eCCCCc--cccccCC--CCCcc
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-K----SLGADEV-L--DYKTPD--GAALKSP--SGRKY  133 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~----~~g~~~v-~--~~~~~~--~~~~~~~--~~~~~  133 (240)
                      ++++||+||+|++|..+++.+...|++|+.++++ ++.+.+ +    ..+.... +  |..+.+  ...++..  ...++
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   81 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGDV   81 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHSSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcCCC
Confidence            5789999999999999999999999999999975 444332 1    3344322 2  222221  1111111  11369


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.++|.
T Consensus        82 d~li~~Ag~   90 (235)
T 3l77_A           82 DVVVANAGL   90 (235)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCcc
Confidence            999999984

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=97.31  E-value=0.0023  Score=45.96  Aligned_cols=101  Identities=11%  Similarity=0.087  Sum_probs=65.8

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC-CEEEEEeCc-ccHHHHH----hcCCC-EEEeCCCCccccccC
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN-THVTASCGA-RNIEFVK----SLGAD-EVLDYKTPDGAALKS  127 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g-~~v~~~~~~-~~~~~~~----~~g~~-~v~~~~~~~~~~~~~  127 (240)
                      ....+     .++.+||-+| +|. |..+..+++..+ .+|++++.+ +..+.++    +.|.. .++-..+. ...+..
T Consensus        19 ~~~~~-----~~~~~vldiG-~G~-G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~-~~~~~~   90 (178)
T 3hm2_A           19 SALAP-----KPHETLWDIG-GGS-GSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGA-PRAFDD   90 (178)
T ss_dssp             HHHCC-----CTTEEEEEES-TTT-THHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCT-TGGGGG
T ss_pred             HHhcc-----cCCCeEEEeC-CCC-CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecch-Hhhhhc
Confidence            45556     7889999999 664 888999999874 599999954 5555554    44543 33211111 111111


Q ss_pred             CCCCcccEEEeCCCCC---CccccccCCCCCcEEEEeCCC
Q 045248          128 PSGRKYDAVIHCATGI---PWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       128 ~~~~~~d~v~d~~g~~---~~~~~~~~l~~~G~iv~~g~~  164 (240)
                       ....||+|+-.....   .+..+.+.|+++|+++.....
T Consensus        91 -~~~~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  129 (178)
T 3hm2_A           91 -VPDNPDVIFIGGGLTAPGVFAAAWKRLPVGGRLVANAVT  129 (178)
T ss_dssp             -CCSCCSEEEECC-TTCTTHHHHHHHTCCTTCEEEEEECS
T ss_pred             -cCCCCCEEEECCcccHHHHHHHHHHhcCCCCEEEEEeec
Confidence             115799999766532   378888899999999876654

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=97.31  E-value=0.00038  Score=53.54  Aligned_cols=77  Identities=21%  Similarity=0.186  Sum_probs=49.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH----hc--C--CCEEE--eCCCCc--cccccC--CCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK----SL--G--ADEVL--DYKTPD--GAALKS--PSG  130 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~----~~--g--~~~v~--~~~~~~--~~~~~~--~~~  130 (240)
                      .++++||+||+|++|.++++.+...|++|+.++++ ++.+.+.    +.  +  ....+  |..+..  ...++.  ...
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKY   85 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHhc
Confidence            67899999999999999999888899999999975 4443332    22  2  22233  222221  111111  011


Q ss_pred             CcccEEEeCCCC
Q 045248          131 RKYDAVIHCATG  142 (240)
Q Consensus       131 ~~~d~v~d~~g~  142 (240)
                      .++|+++.++|.
T Consensus        86 g~iD~lvnnAg~   97 (250)
T 3nyw_A           86 GAVDILVNAAAM   97 (250)
T ss_dssp             CCEEEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            479999999984

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.31  E-value=0.00038  Score=52.95  Aligned_cols=99  Identities=25%  Similarity=0.274  Sum_probs=64.4

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH----hcCCCEEEeCCCCccccccCCC
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK----SLGADEVLDYKTPDGAALKSPS  129 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~----~~g~~~v~~~~~~~~~~~~~~~  129 (240)
                      +...+     .++++||.+| +| .|..+..+++..+.+|++++.+ +..+.++    ..|...+ .....+. ......
T Consensus        85 ~~l~~-----~~~~~vLdiG-~G-~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v-~~~~~d~-~~~~~~  155 (235)
T 1jg1_A           85 EIANL-----KPGMNILEVG-TG-SGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNV-HVILGDG-SKGFPP  155 (235)
T ss_dssp             HHHTC-----CTTCCEEEEC-CT-TSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSE-EEEESCG-GGCCGG
T ss_pred             HhcCC-----CCCCEEEEEe-CC-cCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEECCc-ccCCCC
Confidence            55566     7899999999 66 7888888888776889999954 5555554    3454322 1111111 111112


Q ss_pred             CCcccEEEeCCCCCC-ccccccCCCCCcEEEEeC
Q 045248          130 GRKYDAVIHCATGIP-WSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       130 ~~~~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~g  162 (240)
                      ..+||+|+.+.+... ...+.+.|+++|+++..-
T Consensus       156 ~~~fD~Ii~~~~~~~~~~~~~~~L~pgG~lvi~~  189 (235)
T 1jg1_A          156 KAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPV  189 (235)
T ss_dssp             GCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             CCCccEEEECCcHHHHHHHHHHhcCCCcEEEEEE
Confidence            235999998776543 567888999999887554

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=97.29  E-value=0.0011  Score=51.11  Aligned_cols=77  Identities=21%  Similarity=0.132  Sum_probs=52.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHH----HHHhcCCCEEE---eCCCCc--cccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIE----FVKSLGADEVL---DYKTPD--GAALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~----~~~~~g~~~v~---~~~~~~--~~~~~~--~~~~~~  133 (240)
                      .|++++|+||++|+|.+.++.+...|++|+.+.++ ++.+    .+++.|.....   |-.+++  ...++.  ...+++
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i   87 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHV   87 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCC
Confidence            78999999999999999999999999999999864 4432    33455644332   222221  111111  123579


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |++++++|.
T Consensus        88 DiLVNNAG~   96 (255)
T 4g81_D           88 DILINNAGI   96 (255)
T ss_dssp             CEEEECCCC
T ss_pred             cEEEECCCC
Confidence            999999983

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=97.28  E-value=0.0062  Score=47.37  Aligned_cols=96  Identities=19%  Similarity=0.113  Sum_probs=66.0

Q ss_pred             hhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCC
Q 045248           40 SGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYK  118 (240)
Q Consensus        40 a~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~  118 (240)
                      ...||+...+...+ +..++.    -.|++++|+|.++-+|..+.+++...|+.|+.+.+. ..++.             
T Consensus       139 ~~~PcTp~gv~~lL-~~~~i~----l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~-------------  200 (285)
T 3l07_A          139 CLESCTPKGIMTML-REYGIK----TEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKS-------------  200 (285)
T ss_dssp             CCCCHHHHHHHHHH-HHTTCC----CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHH-------------
T ss_pred             CCCCCCHHHHHHHH-HHhCCC----CCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHH-------------
Confidence            34577666666666 444442    389999999955568999999999999998766542 22221             


Q ss_pred             CCccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248          119 TPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                           ..     ...|+++.++|.+.+ ---+.++++..++.+|..
T Consensus       201 -----~~-----~~ADIVI~Avg~p~~-I~~~~vk~GavVIDvgi~  235 (285)
T 3l07_A          201 -----HT-----TKADILIVAVGKPNF-ITADMVKEGAVVIDVGIN  235 (285)
T ss_dssp             -----HH-----TTCSEEEECCCCTTC-BCGGGSCTTCEEEECCCE
T ss_pred             -----hc-----ccCCEEEECCCCCCC-CCHHHcCCCcEEEEeccc
Confidence                 11     347899999987643 233567888888888864

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=97.27  E-value=0.0056  Score=47.62  Aligned_cols=95  Identities=17%  Similarity=0.160  Sum_probs=66.1

Q ss_pred             hhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCC
Q 045248           41 GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKT  119 (240)
Q Consensus        41 ~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~  119 (240)
                      ..||+...+...+ +..++.    -.|++++|+|.++.+|..+.+++...|+.|+.+.+. +.++..             
T Consensus       139 ~~PcTp~gv~~lL-~~~~i~----l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~~~-------------  200 (285)
T 3p2o_A          139 FLPCTPLGVMKLL-KAYEID----LEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLY-------------  200 (285)
T ss_dssp             CCCHHHHHHHHHH-HHTTCC----CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHH-------------
T ss_pred             CCCCCHHHHHHHH-HHhCCC----CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHHHH-------------
Confidence            4577666666666 444442    389999999966668999999999999998877643 222211             


Q ss_pred             CccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248          120 PDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       120 ~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                           .     ...|+++.++|.+.+ ---+.++++..++.+|..
T Consensus       201 -----~-----~~ADIVI~Avg~p~~-I~~~~vk~GavVIDVgi~  234 (285)
T 3p2o_A          201 -----T-----RQADLIIVAAGCVNL-LRSDMVKEGVIVVDVGIN  234 (285)
T ss_dssp             -----H-----TTCSEEEECSSCTTC-BCGGGSCTTEEEEECCCE
T ss_pred             -----h-----hcCCEEEECCCCCCc-CCHHHcCCCeEEEEeccC
Confidence                 1     347889999887643 233567888888888854

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=97.27  E-value=0.00054  Score=53.24  Aligned_cols=77  Identities=18%  Similarity=0.189  Sum_probs=51.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH-HHhcCCCEE-EeCCCCccc----cccC--CCCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF-VKSLGADEV-LDYKTPDGA----ALKS--PSGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~-~~~~g~~~v-~~~~~~~~~----~~~~--~~~~~~d~v  136 (240)
                      .++++||+||+|++|.++++.+...|++|+.+.++ ++.+. .++++.... +..+-.+..    .++.  ....++|++
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l  105 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGIDIL  105 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHHHHTSCCEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHHHcCCCCEE
Confidence            67899999999999999999999999999999865 44433 355664422 222111111    1111  112479999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      +.++|.
T Consensus       106 vnnAg~  111 (266)
T 3grp_A          106 VNNAGI  111 (266)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999984

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=97.27  E-value=0.00081  Score=51.85  Aligned_cols=76  Identities=17%  Similarity=0.236  Sum_probs=51.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHH----HHHhcCCCEEE---eCCCCc--cccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIE----FVKSLGADEVL---DYKTPD--GAALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~----~~~~~g~~~v~---~~~~~~--~~~~~~--~~~~~~  133 (240)
                      +|+.+||+||++|+|.+.++.+...|++|+.+.++ ++.+    .+++.|.....   |-.+++  ...++.  ..-+++
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~i   85 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRI   85 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            78999999999999999999999999999999865 4443    33456654332   222222  111111  112469


Q ss_pred             cEEEeCCC
Q 045248          134 DAVIHCAT  141 (240)
Q Consensus       134 d~v~d~~g  141 (240)
                      |++++++|
T Consensus        86 DiLVNNAG   93 (254)
T 4fn4_A           86 DVLCNNAG   93 (254)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCc
Confidence            99999998

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=97.27  E-value=0.00054  Score=53.59  Aligned_cols=77  Identities=14%  Similarity=0.196  Sum_probs=51.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH-HHhcCCCEE-E--eCCCCc--cccccCC--CCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF-VKSLGADEV-L--DYKTPD--GAALKSP--SGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~-~~~~g~~~v-~--~~~~~~--~~~~~~~--~~~~~d~v  136 (240)
                      .++++||+||+|++|.++++.+...|++|+.++++ ++.+. .++++.... +  |-.+..  ...++..  .-.++|++
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l  105 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAKWGRVDVL  105 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            67899999999999999999999999999999975 44433 345554322 2  222221  1111110  11369999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      +.++|.
T Consensus       106 v~nAg~  111 (277)
T 4dqx_A          106 VNNAGF  111 (277)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            999983

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=97.26  E-value=0.00054  Score=52.74  Aligned_cols=76  Identities=14%  Similarity=0.129  Sum_probs=50.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCC-EEE--eCCCCc--cccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGAD-EVL--DYKTPD--GAALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~-~v~--~~~~~~--~~~~~~--~~~~~~  133 (240)
                      .++++||+||+|++|.++++.+...|++|+.++++ ++.+.+    ++.|.. ..+  |-.+.+  ...++.  .. .++
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-g~i   84 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAH-APL   84 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH-SCE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhh-CCc
Confidence            67899999999999999999999999999999974 443332    333432 222  222221  111111  12 579


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.++|.
T Consensus        85 d~lv~nAg~   93 (252)
T 3h7a_A           85 EVTIFNVGA   93 (252)
T ss_dssp             EEEEECCCC
T ss_pred             eEEEECCCc
Confidence            999999984

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=97.26  E-value=0.00067  Score=53.00  Aligned_cols=77  Identities=19%  Similarity=0.217  Sum_probs=50.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCC-EEEe--CCCCc--cccccCC--CCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGAD-EVLD--YKTPD--GAALKSP--SGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~-~v~~--~~~~~--~~~~~~~--~~~~~  133 (240)
                      .++++||+||+|++|.++++.+...|++|+.++++ ++.+.+    ++.|.. ..+.  ..+.+  ...++..  .-.++
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~i  110 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELGGI  110 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            67899999999999999999999999999999964 443332    334432 2332  22221  1111110  11369


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.++|.
T Consensus       111 D~lvnnAg~  119 (276)
T 3r1i_A          111 DIAVCNAGI  119 (276)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=97.26  E-value=0.00041  Score=54.19  Aligned_cols=77  Identities=25%  Similarity=0.252  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCC-CE--EE--eCCCCc-c-ccccC--CCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGA-DE--VL--DYKTPD-G-AALKS--PSGR  131 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~-~~--v~--~~~~~~-~-~~~~~--~~~~  131 (240)
                      .++++||+||+|++|..+++.+...|++|++++++ ++.+.+    ++.|. ..  ++  |..+.. . ..++.  ....
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  110 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS  110 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            57899999999999999999999999999999975 443332    33342 12  22  222221 1 11111  0113


Q ss_pred             cccEEEeCCCC
Q 045248          132 KYDAVIHCATG  142 (240)
Q Consensus       132 ~~d~v~d~~g~  142 (240)
                      ++|++|.++|.
T Consensus       111 ~iD~vi~~Ag~  121 (279)
T 1xg5_A          111 GVDICINNAGL  121 (279)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999983

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=97.26  E-value=0.00084  Score=51.69  Aligned_cols=77  Identities=17%  Similarity=0.126  Sum_probs=49.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHH---HHHhcCCCEE-E--eCCCCc--cccccCC--CCCcccE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIE---FVKSLGADEV-L--DYKTPD--GAALKSP--SGRKYDA  135 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~---~~~~~g~~~v-~--~~~~~~--~~~~~~~--~~~~~d~  135 (240)
                      .++++||+||+|++|..+++.+...|++|+.+.++...+   .+++.|.... +  |..+.+  ...++..  .-.++|+
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~   82 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDPAPALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFGGVDI   82 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHSSCSE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            568999999999999999999999999999998753322   2233353322 2  222211  1111110  1136999


Q ss_pred             EEeCCCC
Q 045248          136 VIHCATG  142 (240)
Q Consensus       136 v~d~~g~  142 (240)
                      ++.++|.
T Consensus        83 lv~~Ag~   89 (255)
T 2q2v_A           83 LVNNAGI   89 (255)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999983

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=97.25  E-value=0.00083  Score=51.50  Aligned_cols=77  Identities=25%  Similarity=0.280  Sum_probs=49.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCC-EEE--eCCCCc--cccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGAD-EVL--DYKTPD--GAALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~-~v~--~~~~~~--~~~~~~--~~~~~~  133 (240)
                      .++++||+||+|++|.++++.+...|++|+.+.++ ++.+.+    ++.|.. ..+  |..+.+  ...++.  ..-.++
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i   85 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALGGL   85 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            57899999999999999999999999999999875 444332    233433 222  222221  111111  011469


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.+.|.
T Consensus        86 d~lv~nAg~   94 (247)
T 2jah_A           86 DILVNNAGI   94 (247)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999983

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=97.25  E-value=0.0006  Score=54.27  Aligned_cols=99  Identities=6%  Similarity=-0.017  Sum_probs=63.8

Q ss_pred             HHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHh----cCCCEEEeCCCCccccccC
Q 045248           53 LTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKS----LGADEVLDYKTPDGAALKS  127 (240)
Q Consensus        53 l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~----~g~~~v~~~~~~~~~~~~~  127 (240)
                      +.+..++     +++.+||-+| +|. |..+..+++..|++|++++.+ +..+.+++    .|...-+.....+....  
T Consensus        82 ~~~~~~~-----~~~~~vLDiG-cG~-G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--  152 (318)
T 2fk8_A           82 NLDKLDL-----KPGMTLLDIG-CGW-GTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--  152 (318)
T ss_dssp             HHTTSCC-----CTTCEEEEES-CTT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC--
T ss_pred             HHHhcCC-----CCcCEEEEEc-ccc-hHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC--
Confidence            3355556     7899999999 655 888888888779999999954 55666543    34321111111111111  


Q ss_pred             CCCCcccEEEeC-----CCCC----CccccccCCCCCcEEEEeC
Q 045248          128 PSGRKYDAVIHC-----ATGI----PWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       128 ~~~~~~d~v~d~-----~g~~----~~~~~~~~l~~~G~iv~~g  162 (240)
                        ...||+|+..     ++.+    .+..+.+.|+|+|+++...
T Consensus       153 --~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  194 (318)
T 2fk8_A          153 --AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS  194 (318)
T ss_dssp             --CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             --CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence              2579999876     3321    2566778999999988665

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=97.24  E-value=0.006  Score=47.19  Aligned_cols=94  Identities=13%  Similarity=0.082  Sum_probs=65.5

Q ss_pred             hhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCC
Q 045248           41 GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKT  119 (240)
Q Consensus        41 ~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~  119 (240)
                      ..||+...+...+.... +      .|++++|+|+++-+|..+.+++...|++|+.+.+. ..++..             
T Consensus       131 ~~PcTp~gv~~lL~~~~-l------~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~L~~~-------------  190 (276)
T 3ngx_A          131 LVPATPRAVIDIMDYYG-Y------HENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIGSM-------------  190 (276)
T ss_dssp             SCCHHHHHHHHHHHHHT-C------CSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHH-------------
T ss_pred             CCCCcHHHHHHHHHHhC-c------CCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcccHHHh-------------
Confidence            45777667777774444 5      89999999966679999999999999998877642 222211             


Q ss_pred             CccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCc
Q 045248          120 PDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus       120 ~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~  165 (240)
                           .     ...|+++.++|.+.+ ---+.++++..++.+|...
T Consensus       191 -----~-----~~ADIVI~Avg~p~~-I~~~~vk~GavVIDvgi~~  225 (276)
T 3ngx_A          191 -----T-----RSSKIVVVAVGRPGF-LNREMVTPGSVVIDVGINY  225 (276)
T ss_dssp             -----H-----HHSSEEEECSSCTTC-BCGGGCCTTCEEEECCCEE
T ss_pred             -----h-----ccCCEEEECCCCCcc-ccHhhccCCcEEEEeccCc
Confidence                 1     236888888887542 1224578888888888643

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=97.24  E-value=0.0006  Score=52.66  Aligned_cols=77  Identities=17%  Similarity=0.212  Sum_probs=51.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHH-HHHhcCCCE-EE--eCCCCc--cccccC--CCCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIE-FVKSLGADE-VL--DYKTPD--GAALKS--PSGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~-~~~~~g~~~-v~--~~~~~~--~~~~~~--~~~~~~d~v  136 (240)
                      .++++||+||+|++|..+++.+...|++|+.++++ ++.+ ..++++... .+  |..+.+  ...++.  ....++|++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l   86 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEHAGGLDIL   86 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHSSSCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            67899999999999999999999999999999875 4433 334555432 22  222221  111111  112479999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      +.++|.
T Consensus        87 v~~Ag~   92 (259)
T 4e6p_A           87 VNNAAL   92 (259)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            999984

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=97.24  E-value=0.00069  Score=52.34  Aligned_cols=35  Identities=23%  Similarity=0.167  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .++++||+||+|++|..+++.+...|++|+.++++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   40 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGARLLLFSRN   40 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999999999999999999999999999875

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=97.23  E-value=0.00076  Score=52.61  Aligned_cols=77  Identities=19%  Similarity=0.257  Sum_probs=49.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHH-HH---HhcCCC-EEE--eCCCCc-cccc-c-CCCCCcccE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIE-FV---KSLGAD-EVL--DYKTPD-GAAL-K-SPSGRKYDA  135 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~-~~---~~~g~~-~v~--~~~~~~-~~~~-~-~~~~~~~d~  135 (240)
                      .++++||+||+|++|.++++.+...|++|+.+.++++.+ .+   ++.+.. ..+  |..+.+ .... + .....++|+
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~g~iD~  109 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVADEIADGGGSAEAVVADLADLEGAANVAEELAATRRVDV  109 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTHHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhcCCCcE
Confidence            689999999999999999999999999999988654332 22   233432 222  222211 1111 1 011147999


Q ss_pred             EEeCCCC
Q 045248          136 VIHCATG  142 (240)
Q Consensus       136 v~d~~g~  142 (240)
                      ++.++|.
T Consensus       110 lv~nAg~  116 (273)
T 3uf0_A          110 LVNNAGI  116 (273)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999984

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=97.22  E-value=0.0082  Score=46.68  Aligned_cols=95  Identities=21%  Similarity=0.114  Sum_probs=66.8

Q ss_pred             hhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCC
Q 045248           41 GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKT  119 (240)
Q Consensus        41 ~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~  119 (240)
                      ..||+...+...+ +..++.    -.|++++|+|.++-+|..+.+++...|+.|+.+.+. ..++..             
T Consensus       140 ~~PcTp~gv~~lL-~~~~i~----l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~L~~~-------------  201 (286)
T 4a5o_A          140 LRPCTPKGIMTLL-ASTGAD----LYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLADH-------------  201 (286)
T ss_dssp             SCCHHHHHHHHHH-HHTTCC----CTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSCHHHH-------------
T ss_pred             CCCCCHHHHHHHH-HHhCCC----CCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcCHHHH-------------
Confidence            4577666666666 444443    389999999966669999999999999998877642 222211             


Q ss_pred             CccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248          120 PDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       120 ~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                           +     ...|+++.++|.+.+ ---+.++++..++.+|..
T Consensus       202 -----~-----~~ADIVI~Avg~p~~-I~~~~vk~GavVIDvgi~  235 (286)
T 4a5o_A          202 -----V-----SRADLVVVAAGKPGL-VKGEWIKEGAIVIDVGIN  235 (286)
T ss_dssp             -----H-----HTCSEEEECCCCTTC-BCGGGSCTTCEEEECCSC
T ss_pred             -----h-----ccCCEEEECCCCCCC-CCHHHcCCCeEEEEeccc
Confidence                 1     247899999987643 223567898889888854

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=97.22  E-value=0.00048  Score=52.75  Aligned_cols=77  Identities=16%  Similarity=0.129  Sum_probs=49.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccC--CCCCcccEEEeCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKS--PSGRKYDAVIHCATG  142 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~--~~~~~~d~v~d~~g~  142 (240)
                      .++++||+||+|++|..+++.+...|++|+.++++ ++.+.+.++.....+..+-.+...++.  ..-.++|+++.++|.
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~lv~~Ag~   84 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLFNVAGF   84 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhccCceEEEeeCCCHHHHHHHHHHhCCCCEEEECCcc
Confidence            57899999999999999999999999999999875 443333233211222211111111111  012469999999984

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=97.21  E-value=0.00043  Score=53.57  Aligned_cols=77  Identities=19%  Similarity=0.215  Sum_probs=50.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCC-EEE--eCCCCc--cccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGAD-EVL--DYKTPD--GAALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~-~v~--~~~~~~--~~~~~~--~~~~~~  133 (240)
                      .++++||+||+|++|..+++.+...|++|+.++++ ++.+.+    ++.+.. .++  |..+.+  ...+..  ....++
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i  107 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHGRC  107 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence            67899999999999999999999999999999875 443332    334432 222  222221  111111  111469


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.++|.
T Consensus       108 d~lv~~Ag~  116 (262)
T 3rkr_A          108 DVLVNNAGV  116 (262)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999984

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.21  E-value=0.00061  Score=51.12  Aligned_cols=89  Identities=17%  Similarity=0.034  Sum_probs=57.4

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEe--CCCCccccccCCCCCcccEEEeCCCCC--
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLD--YKTPDGAALKSPSGRKYDAVIHCATGI--  143 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~--~~~~~~~~~~~~~~~~~d~v~d~~g~~--  143 (240)
                      +|||+||+|.+|..+++.+...|.+|++++++ ++.+.+...+.. ++.  ..+...   +  .-.++|+||.++|..  
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~-~~~~D~~d~~~---~--~~~~~d~vi~~ag~~~~   75 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVA-TLVKEPLVLTE---A--DLDSVDAVVDALSVPWG   75 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSE-EEECCGGGCCH---H--HHTTCSEEEECCCCCTT
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCce-EEecccccccH---h--hcccCCEEEECCccCCC
Confidence            59999999999999999999999999999975 454444333332 332  222112   1  124689999999862  


Q ss_pred             ------C---ccccccCCC-CCcEEEEeCC
Q 045248          144 ------P---WSTFEPNLG-TNGKVIDITP  163 (240)
Q Consensus       144 ------~---~~~~~~~l~-~~G~iv~~g~  163 (240)
                            .   ...+++.++ .+++++.++.
T Consensus        76 ~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS  105 (224)
T 3h2s_A           76 SGRGYLHLDFATHLVSLLRNSDTLAVFILG  105 (224)
T ss_dssp             SSCTHHHHHHHHHHHHTCTTCCCEEEEECC
T ss_pred             cchhhHHHHHHHHHHHHHHHcCCcEEEEec
Confidence                  0   122333443 3468887753

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=97.21  E-value=0.00076  Score=52.16  Aligned_cols=77  Identities=22%  Similarity=0.245  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-Hhc----CCC-EEE--eCCCCc--cccccCC--CCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSL----GAD-EVL--DYKTPD--GAALKSP--SGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~----g~~-~v~--~~~~~~--~~~~~~~--~~~~  132 (240)
                      .++++||+||+|++|..+++.+...|++|+.+.++ ++.+.+ +++    +.. ..+  |..+.+  ...++..  .-.+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   85 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSFGG   85 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999999999999999875 443332 222    433 222  222221  1111110  1136


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.++|.
T Consensus        86 id~lv~~Ag~   95 (263)
T 3ai3_A           86 ADILVNNAGT   95 (263)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999983

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=97.20  E-value=0.00065  Score=52.44  Aligned_cols=77  Identities=18%  Similarity=0.258  Sum_probs=50.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH-h---cCCC-EEE--eCCCCc--cccccCC--CCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK-S---LGAD-EVL--DYKTPD--GAALKSP--SGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~-~---~g~~-~v~--~~~~~~--~~~~~~~--~~~~~  133 (240)
                      .++++||+||+|++|.++++.+...|++|+.++++ ++.+.+. +   .+.. ..+  |..+.+  ...++..  ...++
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   84 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGRI   84 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            67899999999999999999999999999999875 4444332 2   3322 222  222221  1111111  11469


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.++|.
T Consensus        85 d~lv~nAg~   93 (257)
T 3imf_A           85 DILINNAAG   93 (257)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999983

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=97.20  E-value=0.00043  Score=53.62  Aligned_cols=76  Identities=24%  Similarity=0.220  Sum_probs=50.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-cc-HHHHHhcCCCEEE--eCCCCc--cccccC--CCCCcccEEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RN-IEFVKSLGADEVL--DYKTPD--GAALKS--PSGRKYDAVI  137 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~-~~~~~~~g~~~v~--~~~~~~--~~~~~~--~~~~~~d~v~  137 (240)
                      .++++||+||+|++|.++++.+...|++|+.++++ ++ .+.+++.+.. .+  |..+..  ...++.  ....++|+++
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv  104 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQAGAV-ALYGDFSCETGIMAFIDLLKTQTSSLRAVV  104 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHHHTCE-EEECCTTSHHHHHHHHHHHHHHCSCCSEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhcCCe-EEECCCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            57899999999999999999999999999999975 33 4445556643 33  222221  111111  1124799999


Q ss_pred             eCCCC
Q 045248          138 HCATG  142 (240)
Q Consensus       138 d~~g~  142 (240)
                      .++|.
T Consensus       105 ~nAg~  109 (260)
T 3gem_A          105 HNASE  109 (260)
T ss_dssp             ECCCC
T ss_pred             ECCCc
Confidence            99983

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=97.20  E-value=0.00066  Score=52.84  Aligned_cols=77  Identities=18%  Similarity=0.164  Sum_probs=51.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH-HHhcCCC-EEE--eCCCCc--cccccC--CCCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF-VKSLGAD-EVL--DYKTPD--GAALKS--PSGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~-~~~~g~~-~v~--~~~~~~--~~~~~~--~~~~~~d~v  136 (240)
                      .++++||+||+|++|.++++.+...|++|+.++++ ++.+. .++++.. ..+  |..+..  ...++.  ..-.++|++
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l   89 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTIDTFGRLDIV   89 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            67899999999999999999999999999999965 55443 3455543 222  222221  111111  011369999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      +.++|.
T Consensus        90 v~nAg~   95 (271)
T 3tzq_B           90 DNNAAH   95 (271)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999984

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=97.20  E-value=0.00075  Score=52.50  Aligned_cols=77  Identities=16%  Similarity=0.103  Sum_probs=50.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCCEEEe--CCCCc-c-ccccC--CCCCcccEEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGADEVLD--YKTPD-G-AALKS--PSGRKYDAVI  137 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~~v~~--~~~~~-~-~~~~~--~~~~~~d~v~  137 (240)
                      .++++||+||+|++|.++++.+...|++|++++++ ++.+.+ +++.....+.  ..+.+ . ..++.  ..-.++|+++
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv   87 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVV   87 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            57899999999999999999999999999999875 444433 3443222232  22211 1 11111  0113699999


Q ss_pred             eCCCC
Q 045248          138 HCATG  142 (240)
Q Consensus       138 d~~g~  142 (240)
                      .++|.
T Consensus        88 ~nAg~   92 (270)
T 1yde_A           88 NNAGH   92 (270)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            99984

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=97.20  E-value=0.00098  Score=51.90  Aligned_cols=77  Identities=16%  Similarity=0.138  Sum_probs=50.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCCE-EE--eCCCCc--ccccc---CCCCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGADE-VL--DYKTPD--GAALK---SPSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~~-v~--~~~~~~--~~~~~---~~~~~~  132 (240)
                      .++++||+||+|++|.++++.+...|++|+.++++ ++.+.+    ++.|... .+  |..+.+  ...++   ...+.+
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~   99 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGK   99 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTSC
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            57899999999999999999999999999999875 443322    2334332 22  222221  11111   111257


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.++|.
T Consensus       100 id~lv~nAg~  109 (273)
T 1ae1_A          100 LNILVNNAGV  109 (273)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEECCCC
Confidence            9999999984

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=97.20  E-value=0.0013  Score=48.92  Aligned_cols=99  Identities=19%  Similarity=0.158  Sum_probs=64.1

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH----hcCCCEEEeCCCCccccccCCC
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK----SLGADEVLDYKTPDGAALKSPS  129 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~----~~g~~~v~~~~~~~~~~~~~~~  129 (240)
                      ....+     +++.+||-+| +| .|..+..+++. +.+|++++.+ +..+.++    ..|...+ .....+... ....
T Consensus        71 ~~l~~-----~~~~~vLdiG-~G-~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~v-~~~~~d~~~-~~~~  140 (210)
T 3lbf_A           71 ELLEL-----TPQSRVLEIG-TG-SGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLHNV-STRHGDGWQ-GWQA  140 (210)
T ss_dssp             HHTTC-----CTTCEEEEEC-CT-TSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCCSE-EEEESCGGG-CCGG
T ss_pred             HhcCC-----CCCCEEEEEc-CC-CCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCce-EEEECCccc-CCcc
Confidence            55566     7899999999 55 57788888887 7899999964 5555554    3453321 111111111 0112


Q ss_pred             CCcccEEEeCCCCCC-ccccccCCCCCcEEEEeCC
Q 045248          130 GRKYDAVIHCATGIP-WSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       130 ~~~~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~g~  163 (240)
                      ...||+|+...+-.. .+.+.+.|+++|+++..-.
T Consensus       141 ~~~~D~i~~~~~~~~~~~~~~~~L~pgG~lv~~~~  175 (210)
T 3lbf_A          141 RAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVG  175 (210)
T ss_dssp             GCCEEEEEESSBCSSCCTHHHHTEEEEEEEEEEEC
T ss_pred             CCCccEEEEccchhhhhHHHHHhcccCcEEEEEEc
Confidence            457999998766544 5578889999998876543

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.19  E-value=0.0008  Score=50.29  Aligned_cols=90  Identities=17%  Similarity=0.125  Sum_probs=57.3

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC---
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP---  144 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~---  144 (240)
                      +|||+||+|.+|..+++.+...|.+|++++++ ++.+.+. .+. .++..+-.+... +.  -.++|+||.++|...   
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~-~~~~~D~~d~~~-~~--~~~~d~vi~~ag~~~~~~   76 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH-KDI-NILQKDIFDLTL-SD--LSDQNVVVDAYGISPDEA   76 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC-SSS-EEEECCGGGCCH-HH--HTTCSEEEECCCSSTTTT
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc-CCC-eEEeccccChhh-hh--hcCCCEEEECCcCCcccc
Confidence            69999999999999999999999999999975 4444332 232 233221111111 11  146899999998531   


Q ss_pred             ------ccccccCCCC--CcEEEEeCC
Q 045248          145 ------WSTFEPNLGT--NGKVIDITP  163 (240)
Q Consensus       145 ------~~~~~~~l~~--~G~iv~~g~  163 (240)
                            ...+++.++.  .++++.++.
T Consensus        77 ~~~~~~~~~l~~a~~~~~~~~~v~~SS  103 (221)
T 3ew7_A           77 EKHVTSLDHLISVLNGTVSPRLLVVGG  103 (221)
T ss_dssp             TSHHHHHHHHHHHHCSCCSSEEEEECC
T ss_pred             chHHHHHHHHHHHHHhcCCceEEEEec
Confidence                  1233444443  368887764

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=97.19  E-value=0.001  Score=51.31  Aligned_cols=77  Identities=17%  Similarity=0.123  Sum_probs=50.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH-HHhcCCC-EEE--eCCCCc-c-ccccCC--CCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF-VKSLGAD-EVL--DYKTPD-G-AALKSP--SGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~-~~~~g~~-~v~--~~~~~~-~-~~~~~~--~~~~~d~v  136 (240)
                      .++++||+||+|++|..+++.+...|++|++++++ ++.+. .++++.. ..+  |..+.. . ..++..  ...++|++
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l   90 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRVDVA   90 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEE
Confidence            57899999999999999999999999999999964 44443 3455543 222  222211 1 111100  11369999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      |.++|.
T Consensus        91 i~~Ag~   96 (265)
T 2o23_A           91 VNCAGI   96 (265)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            999984

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.19  E-value=0.0011  Score=49.97  Aligned_cols=91  Identities=12%  Similarity=0.131  Sum_probs=60.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc--ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA--RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~--~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      .+++|||+| +|.+|...++.+...|++|++++++  +..+.+.+.|....+. .......+     .++|+||-+++.+
T Consensus        30 ~gk~VLVVG-gG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~-~~~~~~dL-----~~adLVIaAT~d~  102 (223)
T 3dfz_A           30 KGRSVLVVG-GGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKR-KKVGEEDL-----LNVFFIVVATNDQ  102 (223)
T ss_dssp             TTCCEEEEC-CSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEEC-SCCCGGGS-----SSCSEEEECCCCT
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEE-CCCCHhHh-----CCCCEEEECCCCH
Confidence            789999999 8999999999999999999998864  3344444444333332 22111222     4699999999887


Q ss_pred             CccccccCCCCCcEEEEeCC
Q 045248          144 PWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       144 ~~~~~~~~l~~~G~iv~~g~  163 (240)
                      ..+..+...++.|..|..-.
T Consensus       103 ~~N~~I~~~ak~gi~VNvvD  122 (223)
T 3dfz_A          103 AVNKFVKQHIKNDQLVNMAS  122 (223)
T ss_dssp             HHHHHHHHHSCTTCEEEC--
T ss_pred             HHHHHHHHHHhCCCEEEEeC
Confidence            65544444444777776654

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=97.19  E-value=0.0012  Score=50.23  Aligned_cols=74  Identities=23%  Similarity=0.268  Sum_probs=48.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEEE--eCCCCcc-ccccCC--CCCcccEEEeCCC
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVL--DYKTPDG-AALKSP--SGRKYDAVIHCAT  141 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~--~~~~~~~-~~~~~~--~~~~~d~v~d~~g  141 (240)
                      ++++||+||+|++|.++++.+...|++|+.++++... ..+++|. ..+  |..+.+. ..++..  .-+++|+++.+.|
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~-~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~g~id~lv~~Ag   79 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE-AAQSLGA-VPLPTDLEKDDPKGLVKRALEALGGLHVLVHAAA   79 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH-HHHHHTC-EEEECCTTTSCHHHHHHHHHHHHTSCCEEEECCC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhhCc-EEEecCCchHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            4789999999999999999999999999999875322 3344553 222  3233221 111110  1146999999998


Q ss_pred             C
Q 045248          142 G  142 (240)
Q Consensus       142 ~  142 (240)
                      .
T Consensus        80 ~   80 (239)
T 2ekp_A           80 V   80 (239)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=97.19  E-value=0.00061  Score=53.11  Aligned_cols=77  Identities=21%  Similarity=0.223  Sum_probs=50.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH-HHhcCCC-EEE--eCCCCc--cccccC--CCCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF-VKSLGAD-EVL--DYKTPD--GAALKS--PSGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~-~~~~g~~-~v~--~~~~~~--~~~~~~--~~~~~~d~v  136 (240)
                      .++++||+||+|++|.++++.+...|++|+.++++ ++.+. .++++.. ..+  |..+.+  ...++.  ...+++|++
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l  106 (272)
T 4dyv_A           27 GKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVEKFGRVDVL  106 (272)
T ss_dssp             -CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            67899999999999999999999999999999875 44433 3455432 233  222221  111111  111479999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      +.++|.
T Consensus       107 VnnAg~  112 (272)
T 4dyv_A          107 FNNAGT  112 (272)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999984

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=97.19  E-value=0.00084  Score=51.85  Aligned_cols=77  Identities=18%  Similarity=0.152  Sum_probs=49.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCC-EEE--eCCCCc--ccccc---CCCCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGAD-EVL--DYKTPD--GAALK---SPSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~-~v~--~~~~~~--~~~~~---~~~~~~  132 (240)
                      .++++||+||+|++|.++++.+...|++|+.++++ ++.+.+    ++.|.. ..+  |..+..  ...++   ...+.+
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~   87 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGK   87 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTTC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            57899999999999999999999999999999875 443322    233432 122  222221  11111   111147


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.++|.
T Consensus        88 id~lv~~Ag~   97 (260)
T 2ae2_A           88 LNILVNNAGI   97 (260)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999983

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=97.18  E-value=0.001  Score=51.48  Aligned_cols=77  Identities=17%  Similarity=0.126  Sum_probs=50.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCC-CEEE--eCCCCc-c-ccccC--CCCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGA-DEVL--DYKTPD-G-AALKS--PSGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~-~~v~--~~~~~~-~-~~~~~--~~~~~~d~v  136 (240)
                      .++++||+||+|++|..+++.+...|++|+.++++ ++.+.+ +++.. ...+  |..+.. . ..++.  ....++|++
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~iD~l   90 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAIDALGGFDLL   90 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHHHHTCCCEE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            57899999999999999999999999999999875 444433 33432 1222  222221 1 11111  011369999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      +.++|.
T Consensus        91 v~~Ag~   96 (263)
T 3ak4_A           91 CANAGV   96 (263)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            999983

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.18  E-value=0.00055  Score=53.00  Aligned_cols=77  Identities=18%  Similarity=0.195  Sum_probs=49.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH----HHhcCC-C-EEE--eCCCCc--cccccC--CCCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF----VKSLGA-D-EVL--DYKTPD--GAALKS--PSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~----~~~~g~-~-~v~--~~~~~~--~~~~~~--~~~~~  132 (240)
                      .++++||+||+|++|.++++.+...|++|+.+.++ ++.+.    +++.+. . ..+  |-.+..  ...++.  ..-.+
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   88 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFGG   88 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            67899999999999999999999999999999875 44333    233442 2 222  222211  111111  01136


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.++|.
T Consensus        89 id~lvnnAg~   98 (262)
T 3pk0_A           89 IDVVCANAGV   98 (262)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999983

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=97.17  E-value=0.00068  Score=52.07  Aligned_cols=77  Identities=19%  Similarity=0.167  Sum_probs=49.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCC-EEE--eCCCCc--cccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGAD-EVL--DYKTPD--GAALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~-~v~--~~~~~~--~~~~~~--~~~~~~  133 (240)
                      .++++||+||+|++|..+++.+...|++|+.++++ ++.+.+    ++.+.. ..+  |..+.+  ...++.  ....++
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   87 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFGGI   87 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            67899999999999999999999999999999875 443333    233432 222  222211  111111  011379


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.++|-
T Consensus        88 d~li~~Ag~   96 (253)
T 3qiv_A           88 DYLVNNAAI   96 (253)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999984

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=97.17  E-value=0.00073  Score=53.39  Aligned_cols=78  Identities=15%  Similarity=0.139  Sum_probs=49.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH----HHhcCCC--EEE--eCCCC-c-c-ccccCC--CC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF----VKSLGAD--EVL--DYKTP-D-G-AALKSP--SG  130 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~----~~~~g~~--~v~--~~~~~-~-~-~~~~~~--~~  130 (240)
                      ..++++||+||+|++|.++++.+...|++|+.++++ ++.+.    +++.+..  ..+  |..+. . . ...+..  ..
T Consensus        10 ~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~   89 (311)
T 3o26_A           10 TKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHF   89 (311)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence            467899999999999999999999999999999975 43322    2333321  122  33332 2 1 111111  11


Q ss_pred             CcccEEEeCCCC
Q 045248          131 RKYDAVIHCATG  142 (240)
Q Consensus       131 ~~~d~v~d~~g~  142 (240)
                      .++|++|.++|.
T Consensus        90 g~iD~lv~nAg~  101 (311)
T 3o26_A           90 GKLDILVNNAGV  101 (311)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            479999999984

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=97.17  E-value=0.00083  Score=52.10  Aligned_cols=77  Identities=13%  Similarity=0.116  Sum_probs=49.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-H---hc--CCC-EEE--eCCCCc--cccccC--CCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-K---SL--GAD-EVL--DYKTPD--GAALKS--PSGR  131 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~---~~--g~~-~v~--~~~~~~--~~~~~~--~~~~  131 (240)
                      .++++||+||+|++|..+++.+...|++|+.++++ ++.+.+ +   +.  +.. ..+  |..+.+  ...++.  ..-+
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   91 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   91 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            57899999999999999999999999999999875 443332 2   22  432 222  222221  111111  0113


Q ss_pred             cccEEEeCCCC
Q 045248          132 KYDAVIHCATG  142 (240)
Q Consensus       132 ~~d~v~d~~g~  142 (240)
                      ++|+++.++|.
T Consensus        92 ~id~lv~nAg~  102 (267)
T 1iy8_A           92 RIDGFFNNAGI  102 (267)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            69999999983

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=97.17  E-value=0.001  Score=52.63  Aligned_cols=77  Identities=17%  Similarity=0.100  Sum_probs=50.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCCE-EE--eCCCCc--cccccCC--CCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGADE-VL--DYKTPD--GAALKSP--SGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~~-v~--~~~~~~--~~~~~~~--~~~~~  133 (240)
                      .++++||+||+|++|.++++.+...|++|+.++++ ++.+.+    ++.+... .+  |..+.+  ...++..  ...++
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  109 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGGV  109 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCCCC
Confidence            67899999999999999999999999999999975 444333    3334332 22  222221  1111110  11379


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |++|.++|.
T Consensus       110 d~lvnnAg~  118 (301)
T 3tjr_A          110 DVVFSNAGI  118 (301)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999984

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=97.17  E-value=0.00063  Score=50.46  Aligned_cols=131  Identities=12%  Similarity=0.137  Sum_probs=76.0

Q ss_pred             cccceEEE-ecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           14 GGLAEFAV-AKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        14 G~~~e~~~-v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      -.|.+|.. .+....+.+++.+++..+.. +.. ......+...  +     +++.+||-+| +|. |..+..+++ .+.
T Consensus        16 p~w~~~~~~~~~~~~~~~~~~~~f~~~~~-~~~-~~~~~~l~~~--~-----~~~~~vLDiG-~G~-G~~~~~l~~-~~~   83 (205)
T 3grz_A           16 PEWEDYQPVFKDQEIIRLDPGLAFGTGNH-QTT-QLAMLGIERA--M-----VKPLTVADVG-TGS-GILAIAAHK-LGA   83 (205)
T ss_dssp             ETTCCCCCSSTTCEEEEESCC-----CCH-HHH-HHHHHHHHHH--C-----SSCCEEEEET-CTT-SHHHHHHHH-TTC
T ss_pred             ccccccccCCCCceeEEecCCcccCCCCC-ccH-HHHHHHHHHh--c-----cCCCEEEEEC-CCC-CHHHHHHHH-CCC
Confidence            45677776 67778888888877665422 111 1122222121  3     6789999999 554 667777766 465


Q ss_pred             -EEEEEeCc-ccHHHHHh----cCCC--EEEeCCCCccccccCCCCCcccEEEeCCCCC----CccccccCCCCCcEEEE
Q 045248           93 -HVTASCGA-RNIEFVKS----LGAD--EVLDYKTPDGAALKSPSGRKYDAVIHCATGI----PWSTFEPNLGTNGKVID  160 (240)
Q Consensus        93 -~v~~~~~~-~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~----~~~~~~~~l~~~G~iv~  160 (240)
                       +|++++.+ ...+.+++    .+..  .++..+..      ......||+|+-.....    .+..+.+.|+++|+++.
T Consensus        84 ~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~------~~~~~~fD~i~~~~~~~~~~~~l~~~~~~L~~gG~l~~  157 (205)
T 3grz_A           84 KSVLATDISDESMTAAEENAALNGIYDIALQKTSLL------ADVDGKFDLIVANILAEILLDLIPQLDSHLNEDGQVIF  157 (205)
T ss_dssp             SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTT------TTCCSCEEEEEEESCHHHHHHHGGGSGGGEEEEEEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccc------ccCCCCceEEEECCcHHHHHHHHHHHHHhcCCCCEEEE
Confidence             99999954 55555543    3432  22221111      11236799998765422    26778888999999987


Q ss_pred             eC
Q 045248          161 IT  162 (240)
Q Consensus       161 ~g  162 (240)
                      .+
T Consensus       158 ~~  159 (205)
T 3grz_A          158 SG  159 (205)
T ss_dssp             EE
T ss_pred             Ee
Confidence            54

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=97.17  E-value=0.00085  Score=52.40  Aligned_cols=77  Identities=16%  Similarity=0.185  Sum_probs=49.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH----HHhcCCC-EEE--eCCCCc--cccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF----VKSLGAD-EVL--DYKTPD--GAALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~----~~~~g~~-~v~--~~~~~~--~~~~~~--~~~~~~  133 (240)
                      .++++||+||+|++|.++++.+...|++|++++++ ++.+.    +++.|.. ..+  |..+..  ...++.  ..-.++
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i  100 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPV  100 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            57899999999999999999999999999999875 44332    2333533 222  222221  111111  012469


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.++|.
T Consensus       101 D~lv~~Ag~  109 (277)
T 2rhc_B          101 DVLVNNAGR  109 (277)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999983

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=97.16  E-value=0.00077  Score=52.85  Aligned_cols=77  Identities=21%  Similarity=0.177  Sum_probs=50.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-Hh---cCCCE-EE--eCCCCc--cccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KS---LGADE-VL--DYKTPD--GAALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~---~g~~~-v~--~~~~~~--~~~~~~--~~~~~~  133 (240)
                      +++++||+||+|++|.++++.+...|++|+.+.++ ++.+.+ ++   .|... .+  |..+..  ...++.  ...+++
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  106 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGHL  106 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            67899999999999999999999999999999975 444333 22   33322 22  222221  111111  112479


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.++|.
T Consensus       107 D~lVnnAg~  115 (283)
T 3v8b_A          107 DIVVANAGI  115 (283)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=97.16  E-value=0.001  Score=52.22  Aligned_cols=35  Identities=14%  Similarity=0.282  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .++++||+||++++|.++++.+...|++|+.++++
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~   42 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGANVALVAKS   42 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            67899999999999999999999999999999964

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=97.16  E-value=0.0007  Score=52.14  Aligned_cols=77  Identities=16%  Similarity=0.139  Sum_probs=50.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH-HHhcCCC-EEE--eCCCCc-c-ccccCC--CCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF-VKSLGAD-EVL--DYKTPD-G-AALKSP--SGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~-~~~~g~~-~v~--~~~~~~-~-~~~~~~--~~~~~d~v  136 (240)
                      .++++||+||+|++|.++++.+...|++|+.++++ ++.+. .++++.. ..+  |..+.+ . ..++..  .-.++|++
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~l   83 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDGL   83 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            57899999999999999999999999999999875 44443 3444432 222  222221 1 111110  11369999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      +.++|.
T Consensus        84 v~nAg~   89 (254)
T 1hdc_A           84 VNNAGI   89 (254)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999984

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.15  E-value=0.00083  Score=52.17  Aligned_cols=77  Identities=19%  Similarity=0.178  Sum_probs=49.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-H----hcCCCE-EE--eCCCCc-c-ccccCC--CCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-K----SLGADE-VL--DYKTPD-G-AALKSP--SGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~----~~g~~~-v~--~~~~~~-~-~~~~~~--~~~~  132 (240)
                      .++++||+||+|++|.++++.+...|++|+.++++ ++.+.+ +    ..|... .+  |..+.. . ..++..  .-.+
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   99 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGK   99 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            67899999999999999999999999999999875 443322 2    235432 22  222221 1 111110  1136


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.++|.
T Consensus       100 iD~lvnnAg~  109 (267)
T 1vl8_A          100 LDTVVNAAGI  109 (267)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999984

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=97.15  E-value=0.00058  Score=52.68  Aligned_cols=77  Identities=19%  Similarity=0.154  Sum_probs=51.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCC-EEE--eCCCCc-c-ccccC--CCCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGAD-EVL--DYKTPD-G-AALKS--PSGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~-~v~--~~~~~~-~-~~~~~--~~~~~~d~v  136 (240)
                      .++++||+||+|++|.++++.+...|++|+.+.++ ++.+.+ ++++.. ..+  |..+.+ . ..++.  ....++|++
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l   86 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAIDLL   86 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            67899999999999999999999999999999975 444443 344432 222  222221 1 11111  112479999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      +.+.|.
T Consensus        87 v~nAg~   92 (255)
T 4eso_A           87 HINAGV   92 (255)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999984

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=97.15  E-value=0.00092  Score=50.64  Aligned_cols=77  Identities=17%  Similarity=0.186  Sum_probs=50.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCCEEEeCCCCccc----cccCC--CCCcccEEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGADEVLDYKTPDGA----ALKSP--SGRKYDAVI  137 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~~v~~~~~~~~~----~~~~~--~~~~~d~v~  137 (240)
                      .++++||+||+|++|..+++.+...|++|+++.++ ++.+.+ ++++....+..+-.+..    .++..  .-.++|+++
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li   83 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEEAFGELSALV   83 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            46789999999999999999999999999999875 444433 34432233322222211    11110  113699999


Q ss_pred             eCCCC
Q 045248          138 HCATG  142 (240)
Q Consensus       138 d~~g~  142 (240)
                      .+.|.
T Consensus        84 ~~Ag~   88 (234)
T 2ehd_A           84 NNAGV   88 (234)
T ss_dssp             ECCCC
T ss_pred             ECCCc
Confidence            99983

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=97.14  E-value=0.0011  Score=53.50  Aligned_cols=77  Identities=17%  Similarity=0.269  Sum_probs=50.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-cc-----------HHHHHhcCCCEE-E--eCCCCc--cccccCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RN-----------IEFVKSLGADEV-L--DYKTPD--GAALKSP  128 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~-----------~~~~~~~g~~~v-~--~~~~~~--~~~~~~~  128 (240)
                      .++++||+||++++|.++++.+...|++|+.+.++ ++           .+.+++.|.... +  |..+.+  ...++..
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~  123 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVEKA  123 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHH
Confidence            68999999999999999999999999999999864 32           233344554322 2  222222  1111111


Q ss_pred             --CCCcccEEEeCCCC
Q 045248          129 --SGRKYDAVIHCATG  142 (240)
Q Consensus       129 --~~~~~d~v~d~~g~  142 (240)
                        ...++|++|.++|.
T Consensus       124 ~~~~g~iDilVnnAG~  139 (346)
T 3kvo_A          124 IKKFGGIDILVNNASA  139 (346)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence              11379999999984

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=97.14  E-value=0.00072  Score=52.51  Aligned_cols=77  Identities=21%  Similarity=0.287  Sum_probs=50.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCCEE-E--eCCCCc--cccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGADEV-L--DYKTPD--GAALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~~v-~--~~~~~~--~~~~~~--~~~~~~  133 (240)
                      .++++||+||+|++|.++++.+...|++|+.++++ ++.+.+    ++.|.... +  |..+..  ...++.  ...+++
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   82 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRI   82 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            56899999999999999999999999999999875 443333    33343222 2  222221  111111  112469


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.++|.
T Consensus        83 D~lVnnAG~   91 (264)
T 3tfo_A           83 DVLVNNAGV   91 (264)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=97.14  E-value=0.00064  Score=52.05  Aligned_cols=77  Identities=14%  Similarity=0.058  Sum_probs=49.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcC---CCEEEe--CCCCc-c-ccccC--CCCCccc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLG---ADEVLD--YKTPD-G-AALKS--PSGRKYD  134 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g---~~~v~~--~~~~~-~-~~~~~--~~~~~~d  134 (240)
                      .++++||+||+|++|..+++.+...|++|+.+.++ ++.+.+ +++.   ....+.  ..+.. . ..++.  ..-.++|
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   84 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVS   84 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            67899999999999999999999999999999875 443333 3332   112222  22211 1 11111  0113699


Q ss_pred             EEEeCCCC
Q 045248          135 AVIHCATG  142 (240)
Q Consensus       135 ~v~d~~g~  142 (240)
                      ++|.++|.
T Consensus        85 ~li~~Ag~   92 (251)
T 1zk4_A           85 TLVNNAGI   92 (251)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999983

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=97.14  E-value=0.0015  Score=50.60  Aligned_cols=78  Identities=15%  Similarity=0.128  Sum_probs=50.9

Q ss_pred             CCCCeEEEEcCC--chHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCCEEEeC--CCCc--cccccC--CCCC
Q 045248           65 GQQKNILVTAAS--GGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGADEVLDY--KTPD--GAALKS--PSGR  131 (240)
Q Consensus        65 ~~g~~vlV~G~~--g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~~v~~~--~~~~--~~~~~~--~~~~  131 (240)
                      .+++++||+||+  |++|..+++.+...|++|+.+.+. +..+.+    ++.+....+..  .+.+  ...++.  ....
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   91 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTHWD   91 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            578999999988  999999999999999999999864 322222    34443333322  2221  111111  1124


Q ss_pred             cccEEEeCCCC
Q 045248          132 KYDAVIHCATG  142 (240)
Q Consensus       132 ~~d~v~d~~g~  142 (240)
                      ++|++|.++|.
T Consensus        92 ~id~lv~nAg~  102 (271)
T 3ek2_A           92 SLDGLVHSIGF  102 (271)
T ss_dssp             CEEEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            79999999984

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=97.13  E-value=0.0014  Score=51.81  Aligned_cols=99  Identities=9%  Similarity=0.043  Sum_probs=64.7

Q ss_pred             HHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHH----hcCCCEEEeCCCCccccccC
Q 045248           53 LTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVK----SLGADEVLDYKTPDGAALKS  127 (240)
Q Consensus        53 l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~----~~g~~~v~~~~~~~~~~~~~  127 (240)
                      +....++     +++.+||-+| +| .|..+..+++..|++|++++. ++..+.++    +.|...-+.....+....  
T Consensus        64 ~~~~~~~-----~~~~~vLDiG-cG-~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--  134 (302)
T 3hem_A           64 ALDKLNL-----EPGMTLLDIG-CG-WGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--  134 (302)
T ss_dssp             HHHTTCC-----CTTCEEEEET-CT-TSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--
T ss_pred             HHHHcCC-----CCcCEEEEee-cc-CcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc--
Confidence            3356666     7999999999 55 488889999988899999995 45555554    344321111111111111  


Q ss_pred             CCCCcccEEEeCCCC----------------CCccccccCCCCCcEEEEeC
Q 045248          128 PSGRKYDAVIHCATG----------------IPWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       128 ~~~~~~d~v~d~~g~----------------~~~~~~~~~l~~~G~iv~~g  162 (240)
                        ...||+|+-...-                ..+..+.+.|+|+|+++...
T Consensus       135 --~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  183 (302)
T 3hem_A          135 --DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  183 (302)
T ss_dssp             --CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred             --CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence              4679999864321                12567778999999988765

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=97.13  E-value=0.001  Score=50.80  Aligned_cols=77  Identities=17%  Similarity=0.160  Sum_probs=49.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH----h-cCCC-EEE--eCCCCc-c-ccccC--CCCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK----S-LGAD-EVL--DYKTPD-G-AALKS--PSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~----~-~g~~-~v~--~~~~~~-~-~~~~~--~~~~~  132 (240)
                      .+++++|+||+|++|..+++.+...|++|+++.++ ++.+.+.    + .+.. ..+  |..+.+ . ..++.  ..-.+
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   85 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVDG   85 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            57899999999999999999999999999999975 4433322    1 3433 222  222221 1 11110  01246


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|++|.++|.
T Consensus        86 ~d~vi~~Ag~   95 (248)
T 2pnf_A           86 IDILVNNAGI   95 (248)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=97.13  E-value=0.0009  Score=51.61  Aligned_cols=77  Identities=22%  Similarity=0.216  Sum_probs=51.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCCE-EE--eCCCCc--cccccC--CCCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGADE-VL--DYKTPD--GAALKS--PSGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~~-v~--~~~~~~--~~~~~~--~~~~~~d~v  136 (240)
                      .++++||+||+|++|.++++.+...|++|+.++++ ++.+.+ ++++... .+  |..+.+  ...++.  ....++|++
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l   87 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGDAALAVAADISKEADVDAAVEAALSKFGKVDIL   87 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            67899999999999999999999999999999975 444433 4555432 22  222211  111111  011369999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      +.++|.
T Consensus        88 i~~Ag~   93 (261)
T 3n74_A           88 VNNAGI   93 (261)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            999983

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.12  E-value=0.00075  Score=51.47  Aligned_cols=77  Identities=19%  Similarity=0.192  Sum_probs=50.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCC--CEEEEEeCc-ccHHHHHhc-CCC-EEE--eCCCCc-c-cccc---C-CCCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGN--THVTASCGA-RNIEFVKSL-GAD-EVL--DYKTPD-G-AALK---S-PSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g--~~v~~~~~~-~~~~~~~~~-g~~-~v~--~~~~~~-~-~~~~---~-~~~~~  132 (240)
                      .+++++|+||+|++|..+++.+...|  ++|+++.++ ++.+.++++ +.. ..+  |..+.. . ..++   . .+..+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~~   81 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDG   81 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGC
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHhccCCceEEEEeecCCHHHHHHHHHHHHHhcCCCC
Confidence            45789999999999999999999999  999999975 555555554 322 222  222211 1 1111   1 11126


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|++|.++|.
T Consensus        82 id~li~~Ag~   91 (250)
T 1yo6_A           82 LSLLINNAGV   91 (250)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEECCcc
Confidence            9999999984

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=97.12  E-value=0.001  Score=51.95  Aligned_cols=77  Identities=19%  Similarity=0.216  Sum_probs=50.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH-HHhcCCC-EEE--eCCCCc--cccccC--CCCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF-VKSLGAD-EVL--DYKTPD--GAALKS--PSGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~-~~~~g~~-~v~--~~~~~~--~~~~~~--~~~~~~d~v  136 (240)
                      .++++||+||+|++|..+++.+...|++|++++++ ++.+. .++++.. ..+  |..+..  ...+..  ....++|++
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~l   83 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLARYGRVDVL   83 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCSEE
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCceEEEeeCCCHHHHHHHHHHHHHhCCCCCEE
Confidence            56899999999999999999999999999999975 44443 3455533 222  222211  111111  011369999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      +.++|.
T Consensus        84 v~~Ag~   89 (281)
T 3m1a_A           84 VNNAGR   89 (281)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            999983

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=97.11  E-value=0.00068  Score=50.83  Aligned_cols=70  Identities=11%  Similarity=0.204  Sum_probs=46.3

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCc-cccccCCCCCcccEEEeCCCC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      +|||+||+|.+|..+++.+...|++|++++++ ++.+..   ....++..+-.+ ...+...- .++|+||.++|.
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~-~~~d~vi~~ag~   73 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY---NNVKAVHFDVDWTPEEMAKQL-HGMDAIINVSGS   73 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC---TTEEEEECCTTSCHHHHHTTT-TTCSEEEECCCC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc---CCceEEEecccCCHHHHHHHH-cCCCEEEECCcC
Confidence            69999999999999999999999999999975 332211   212233222222 22222111 369999999985

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=97.11  E-value=0.00062  Score=52.50  Aligned_cols=77  Identities=22%  Similarity=0.209  Sum_probs=46.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHH-HHHhcCCC-EEE--eCCCCc--cccccC--CCCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIE-FVKSLGAD-EVL--DYKTPD--GAALKS--PSGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~-~~~~~g~~-~v~--~~~~~~--~~~~~~--~~~~~~d~v  136 (240)
                      .++++||+||+|++|.++++.+...|++|+.++++ ++.+ ..++++.. ..+  |..+..  ...++.  ....++|++
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l   85 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALAFAKQEFGHVHGL   85 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC------------CEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            67899999999999999999999999999999864 4433 33444432 222  222211  111111  111369999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      +.++|.
T Consensus        86 v~nAg~   91 (257)
T 3tpc_A           86 VNCAGT   91 (257)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999984

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=97.10  E-value=0.00086  Score=51.70  Aligned_cols=75  Identities=19%  Similarity=0.193  Sum_probs=48.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCE-EE--eCCCCc-c-ccccC-CCCCcccEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADE-VL--DYKTPD-G-AALKS-PSGRKYDAVIHC  139 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~-v~--~~~~~~-~-~~~~~-~~~~~~d~v~d~  139 (240)
                      .++++||+||++++|.++++.+...|++|+.+.+. ..+..++++... .+  |..+.+ . ..++. ....++|+++.+
T Consensus         8 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~g~id~lv~n   86 (257)
T 3tl3_A            8 RDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIR-GEDVVADLGDRARFAAADVTDEAAVASALDLAETMGTLRIVVNC   86 (257)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESS-CHHHHHHTCTTEEEEECCTTCHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCc-hHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhCCCCEEEEC
Confidence            57899999999999999999999999999999873 223344555432 22  222221 1 11110 012479999999


Q ss_pred             CC
Q 045248          140 AT  141 (240)
Q Consensus       140 ~g  141 (240)
                      +|
T Consensus        87 Ag   88 (257)
T 3tl3_A           87 AG   88 (257)
T ss_dssp             GG
T ss_pred             CC
Confidence            98

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=97.10  E-value=0.0012  Score=50.44  Aligned_cols=77  Identities=21%  Similarity=0.215  Sum_probs=50.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcC-C-CEEEeCCC--Cccc----cccC--CCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLG-A-DEVLDYKT--PDGA----ALKS--PSG  130 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g-~-~~v~~~~~--~~~~----~~~~--~~~  130 (240)
                      .+++++|+||+|++|..+++.+...|++|+.++++ ++.+.+    ++.+ . ..++..+-  .+..    ..+.  ...
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~   92 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHEF   92 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHhC
Confidence            68899999999999999999999999999999975 444333    3333 2 22332221  2211    1111  011


Q ss_pred             CcccEEEeCCCC
Q 045248          131 RKYDAVIHCATG  142 (240)
Q Consensus       131 ~~~d~v~d~~g~  142 (240)
                      +++|+++.++|.
T Consensus        93 g~id~lv~nAg~  104 (247)
T 3i1j_A           93 GRLDGLLHNASI  104 (247)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            379999999984

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=97.10  E-value=0.00091  Score=52.36  Aligned_cols=77  Identities=19%  Similarity=0.220  Sum_probs=49.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-Hhc---CCCEEE---eCCCCc--cccccCC--CCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSL---GADEVL---DYKTPD--GAALKSP--SGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~---g~~~v~---~~~~~~--~~~~~~~--~~~~~  133 (240)
                      .++++||+||+|++|.++++.+...|++|+.++++ ++.+.+ +++   +....+   |..+..  ...++..  .-.++
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   86 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGGL   86 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            67899999999999999999999999999998875 444333 232   333222   112211  1111110  11369


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.++|.
T Consensus        87 D~lvnnAg~   95 (280)
T 3tox_A           87 DTAFNNAGA   95 (280)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999983

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.10  E-value=0.001  Score=49.66  Aligned_cols=100  Identities=20%  Similarity=0.151  Sum_probs=64.7

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC--CEEEEEeCc-ccHHHHH----hcCCCEEEeCCCCccccccC
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN--THVTASCGA-RNIEFVK----SLGADEVLDYKTPDGAALKS  127 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g--~~v~~~~~~-~~~~~~~----~~g~~~v~~~~~~~~~~~~~  127 (240)
                      +...+     .++.+||.+| +| .|..+..+++..|  .+|++++.+ +..+.++    ..|...+ .....+... ..
T Consensus        71 ~~~~~-----~~~~~vLdiG-~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v-~~~~~d~~~-~~  141 (215)
T 2yxe_A           71 ELLDL-----KPGMKVLEIG-TG-CGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNV-IVIVGDGTL-GY  141 (215)
T ss_dssp             HHTTC-----CTTCEEEEEC-CT-TSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTE-EEEESCGGG-CC
T ss_pred             HhhCC-----CCCCEEEEEC-CC-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCe-EEEECCccc-CC
Confidence            55566     7899999999 66 5888888888876  799999954 5555554    3343221 111111110 01


Q ss_pred             CCCCcccEEEeCCCCCC-ccccccCCCCCcEEEEeCC
Q 045248          128 PSGRKYDAVIHCATGIP-WSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       128 ~~~~~~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~g~  163 (240)
                      .....||+|+...+-.. ...+.+.|+++|+++..-.
T Consensus       142 ~~~~~fD~v~~~~~~~~~~~~~~~~L~pgG~lv~~~~  178 (215)
T 2yxe_A          142 EPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVG  178 (215)
T ss_dssp             GGGCCEEEEEESSBBSSCCHHHHHTEEEEEEEEEEES
T ss_pred             CCCCCeeEEEECCchHHHHHHHHHHcCCCcEEEEEEC
Confidence            12357999998776443 5677889999999876643

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.09  E-value=0.00071  Score=52.43  Aligned_cols=76  Identities=26%  Similarity=0.306  Sum_probs=49.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCC-EEE--eCCCCc--cccccC--CCCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGAD-EVL--DYKTPD--GAALKS--PSGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~-~v~--~~~~~~--~~~~~~--~~~~~~d~v  136 (240)
                      .+++++|+||+|++|.++++.+...|++|+.++++ ++.+.+ ++++.. ..+  |..+.+  ...++.  ..-.++|++
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~l   84 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHGV   84 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHHcCCCcEE
Confidence            57899999999999999999999999999999975 444443 444422 222  222221  111111  011468999


Q ss_pred             EeCCC
Q 045248          137 IHCAT  141 (240)
Q Consensus       137 ~d~~g  141 (240)
                      +.+.|
T Consensus        85 vnnAg   89 (263)
T 2a4k_A           85 AHFAG   89 (263)
T ss_dssp             EEGGG
T ss_pred             EECCC
Confidence            99987

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=97.09  E-value=0.00076  Score=53.20  Aligned_cols=77  Identities=22%  Similarity=0.295  Sum_probs=49.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-Hh---cCC-C-EEE--eCCCCc--cccccC--CCCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KS---LGA-D-EVL--DYKTPD--GAALKS--PSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~---~g~-~-~v~--~~~~~~--~~~~~~--~~~~~  132 (240)
                      .++++||+||+|++|.++++.+...|++|+.++++ ++.+.+ ++   .+. . ..+  |-.+..  ...++.  ..-.+
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  119 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFGA  119 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            67899999999999999999999999999999964 443332 33   331 1 222  222221  111111  11246


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.++|.
T Consensus       120 iD~lvnnAg~  129 (293)
T 3rih_A          120 LDVVCANAGI  129 (293)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999983

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=97.09  E-value=0.0013  Score=50.24  Aligned_cols=76  Identities=18%  Similarity=0.172  Sum_probs=46.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCcc---ccc-c-CCCCCcccEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDG---AAL-K-SPSGRKYDAVIHC  139 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~---~~~-~-~~~~~~~d~v~d~  139 (240)
                      .++++||+||+|++|.++++.+.. |++|+.+.++ ++.+.+.+......+..+-.+.   ... + ...-.++|+++.+
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~lv~~   82 (245)
T 3e9n_A            4 KKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALAEIEGVEPIESDIVKEVLEEGGVDKLKNLDHVDTLVHA   82 (245)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHHTSTTEEEEECCHHHHHHTSSSCGGGTTCSCCSEEEEC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHhhcCCcceecccchHHHHHHHHHHHHhcCCCCEEEEC
Confidence            578999999999999998877766 8999998875 5566555543222222111111   111 1 1112479999999


Q ss_pred             CCC
Q 045248          140 ATG  142 (240)
Q Consensus       140 ~g~  142 (240)
                      +|.
T Consensus        83 Ag~   85 (245)
T 3e9n_A           83 AAV   85 (245)
T ss_dssp             C--
T ss_pred             CCc
Confidence            984

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=97.09  E-value=0.00025  Score=54.25  Aligned_cols=75  Identities=17%  Similarity=0.143  Sum_probs=49.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCC-EEEeCCCCc--cccccCCCCCcccEEEeCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGAD-EVLDYKTPD--GAALKSPSGRKYDAVIHCAT  141 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~-~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g  141 (240)
                      .|+++||+||++|+|.+.++.+...|++|+.+.++ ++.+..+.-... ...|-.+++  .+.++..  +++|+++++.|
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~--g~iDiLVNNAG   87 (242)
T 4b79_A           10 AGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAPRHPRIRREELDITDSQRLQRLFEAL--PRLDVLVNNAG   87 (242)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSCCCTTEEEEECCTTCHHHHHHHHHHC--SCCSEEEECCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhhhcCCeEEEEecCCCHHHHHHHHHhc--CCCCEEEECCC
Confidence            79999999999999999999999999999999965 443322111111 111222222  1122222  46999999998


Q ss_pred             C
Q 045248          142 G  142 (240)
Q Consensus       142 ~  142 (240)
                      -
T Consensus        88 i   88 (242)
T 4b79_A           88 I   88 (242)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=97.08  E-value=0.00089  Score=51.70  Aligned_cols=77  Identities=17%  Similarity=0.141  Sum_probs=49.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-cc-HHHH-Hhc----CCCE-EE--eCCCCc-c-ccccC--CCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RN-IEFV-KSL----GADE-VL--DYKTPD-G-AALKS--PSGR  131 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~-~~~~-~~~----g~~~-v~--~~~~~~-~-~~~~~--~~~~  131 (240)
                      .++++||+||+|++|..+++.+...|++|+.+.++ ++ .+.+ +++    |... .+  |..+.. . ..++.  ..-.
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   82 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMG   82 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            56899999999999999999999999999998865 33 3332 222    4332 22  222211 1 11111  0113


Q ss_pred             cccEEEeCCCC
Q 045248          132 KYDAVIHCATG  142 (240)
Q Consensus       132 ~~d~v~d~~g~  142 (240)
                      ++|+++.++|.
T Consensus        83 ~iD~lv~~Ag~   93 (260)
T 1x1t_A           83 RIDILVNNAGI   93 (260)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999983

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=97.08  E-value=0.00088  Score=51.65  Aligned_cols=77  Identities=19%  Similarity=0.217  Sum_probs=50.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCCE-EE--eCCCCc--cccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGADE-VL--DYKTPD--GAALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~~-v~--~~~~~~--~~~~~~--~~~~~~  133 (240)
                      .++++||+||+|++|.++++.+...|++|+.+.++ ++.+.+    ++.+... .+  |-.+..  ...++.  ....++
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   90 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGKI   90 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            68899999999999999999888899999999865 443332    3445432 22  222221  111111  011479


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.++|.
T Consensus        91 d~lv~nAg~   99 (256)
T 3gaf_A           91 TVLVNNAGG   99 (256)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.08  E-value=0.0009  Score=50.22  Aligned_cols=94  Identities=14%  Similarity=0.108  Sum_probs=56.8

Q ss_pred             CeEEEEcCCchHHHHHHHHHH-hCCCEEEEEeCc-c-cHHHHHhcCCC-EEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           68 KNILVTAASGGVGHYAVQLAK-LGNTHVTASCGA-R-NIEFVKSLGAD-EVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~-~~g~~v~~~~~~-~-~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      +++||+||+|++|..+++.+. ..|++|+++.++ + +.+.+...+.. .++..+-.+...+...- .++|++|.++|..
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~-~~~d~vv~~ag~~   84 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAV-TNAEVVFVGAMES   84 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHH-TTCSEEEESCCCC
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHH-cCCCEEEEcCCCC
Confidence            569999999999999988887 899999999975 4 44443222322 23322222211111111 3689999999863


Q ss_pred             C--ccccccCCCC--CcEEEEeC
Q 045248          144 P--WSTFEPNLGT--NGKVIDIT  162 (240)
Q Consensus       144 ~--~~~~~~~l~~--~G~iv~~g  162 (240)
                      .  ...+++.++.  .|+++.++
T Consensus        85 n~~~~~~~~~~~~~~~~~iv~iS  107 (221)
T 3r6d_A           85 GSDMASIVKALSRXNIRRVIGVS  107 (221)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             ChhHHHHHHHHHhcCCCeEEEEe
Confidence            2  2233333332  36888775

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=97.08  E-value=0.00074  Score=52.74  Aligned_cols=77  Identities=17%  Similarity=0.171  Sum_probs=48.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-Hhc---CCCEEE--eCCCCc--cccccC--CCCCccc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSL---GADEVL--DYKTPD--GAALKS--PSGRKYD  134 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~---g~~~v~--~~~~~~--~~~~~~--~~~~~~d  134 (240)
                      .++++||+||+|++|.++++.+...|++|+.++++ ++.+.+ +++   |....+  |..+.+  ...++.  ....++|
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD  107 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELSARLD  107 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHCSCCS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence            57899999999999999999999999999999875 443332 332   311111  222211  011111  1124699


Q ss_pred             EEEeCCCC
Q 045248          135 AVIHCATG  142 (240)
Q Consensus       135 ~v~d~~g~  142 (240)
                      ++|.++|.
T Consensus       108 ~lvnnAg~  115 (276)
T 2b4q_A          108 ILVNNAGT  115 (276)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999983

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=97.07  E-value=0.00094  Score=52.20  Aligned_cols=77  Identities=17%  Similarity=0.126  Sum_probs=51.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH-HHhcCCC-EEE--eCCCCc--cccccC--CCCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF-VKSLGAD-EVL--DYKTPD--GAALKS--PSGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~-~~~~g~~-~v~--~~~~~~--~~~~~~--~~~~~~d~v  136 (240)
                      .++++||+||+|++|.++++.+...|++|+.+.++ ++.+. .++++.. ..+  |..+.+  ...++.  ..-.++|++
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l  107 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAFGGVDKL  107 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHHHSSCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            67899999999999999999999999999999975 44433 3455532 233  222221  111111  111469999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      +.++|.
T Consensus       108 vnnAg~  113 (277)
T 3gvc_A          108 VANAGV  113 (277)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999984

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=97.07  E-value=0.001  Score=50.85  Aligned_cols=77  Identities=19%  Similarity=0.166  Sum_probs=50.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCCE-EE--eCCCCc-c-ccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGADE-VL--DYKTPD-G-AALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~~-v~--~~~~~~-~-~~~~~--~~~~~~  133 (240)
                      .++++||+||+|++|..+++.+...|++|+.+.++ ++.+.+    ++.+... .+  |..+.. . ..++.  ....++
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLAI   83 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            57899999999999999999999999999999975 443332    3445432 22  222221 1 11111  122469


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.++|.
T Consensus        84 d~li~~Ag~   92 (247)
T 3lyl_A           84 DILVNNAGI   92 (247)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=97.07  E-value=0.0012  Score=50.80  Aligned_cols=77  Identities=17%  Similarity=0.189  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHH----HHHhcCCC-EEE--eCCCCc-c-ccccCC--CCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIE----FVKSLGAD-EVL--DYKTPD-G-AALKSP--SGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~----~~~~~g~~-~v~--~~~~~~-~-~~~~~~--~~~~~  133 (240)
                      .++++||+||+|++|..+++.+...|++|++++++ ++.+    .+++.+.. ..+  |..+.. . ..++..  ...++
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   91 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEGRV   91 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            57899999999999999999999999999999975 3332    22333433 222  222211 1 111110  11369


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |++|.++|.
T Consensus        92 d~vi~~Ag~  100 (260)
T 3awd_A           92 DILVACAGI  100 (260)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999983

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=97.07  E-value=0.0011  Score=50.77  Aligned_cols=77  Identities=16%  Similarity=0.126  Sum_probs=50.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCCE--EE--eCCCCc-c-ccccCC-CCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGADE--VL--DYKTPD-G-AALKSP-SGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~~--v~--~~~~~~-~-~~~~~~-~~~~~d~v  136 (240)
                      .++++||+||+|++|..+++.+...|++|++++++ ++.+.+ ++++...  .+  |..+.. . ..++.. ...++|++
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~l   89 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEAEAVAPVSIL   89 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHHHHhhCCCcEE
Confidence            57899999999999999999999999999999975 444333 3444322  22  222221 1 111100 02469999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      |.++|.
T Consensus        90 i~~Ag~   95 (254)
T 2wsb_A           90 VNSAGI   95 (254)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            999984

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=97.07  E-value=0.0012  Score=51.36  Aligned_cols=77  Identities=17%  Similarity=0.151  Sum_probs=50.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH----HHhcCCC-EEE--eCCCCc--cccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF----VKSLGAD-EVL--DYKTPD--GAALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~----~~~~g~~-~v~--~~~~~~--~~~~~~--~~~~~~  133 (240)
                      .++++||+||+|++|..+++.+...|++|++++++ ++.+.    +++.|.. ..+  |..+.+  ...++.  ..-.++
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i  109 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDV  109 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCCC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHCCCC
Confidence            67899999999999999999999999999999875 44332    2333533 222  222211  111111  112469


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |++|.++|.
T Consensus       110 D~li~~Ag~  118 (272)
T 1yb1_A          110 SILVNNAGV  118 (272)
T ss_dssp             SEEEECCCC
T ss_pred             cEEEECCCc
Confidence            999999984

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=97.07  E-value=0.00092  Score=51.99  Aligned_cols=74  Identities=16%  Similarity=0.159  Sum_probs=48.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEEE--eCCCCc--cccccC--CCCCcccEEEe
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVL--DYKTPD--GAALKS--PSGRKYDAVIH  138 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~--~~~~~~--~~~~~~--~~~~~~d~v~d  138 (240)
                      ..++++||+||+|++|.++++.+...|++|+.+.++....    .+....+  |-.+..  ...++.  ..-.++|+++.
T Consensus        12 ~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~   87 (269)
T 3vtz_A           12 FTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSD----VNVSDHFKIDVTNEEEVKEAVEKTTKKYGRIDILVN   87 (269)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--C----TTSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhc----cCceeEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            5789999999999999999999999999999998653211    1112222  222221  111111  01147999999


Q ss_pred             CCCC
Q 045248          139 CATG  142 (240)
Q Consensus       139 ~~g~  142 (240)
                      ++|.
T Consensus        88 nAg~   91 (269)
T 3vtz_A           88 NAGI   91 (269)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            9984

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=97.07  E-value=0.0021  Score=51.65  Aligned_cols=76  Identities=18%  Similarity=0.081  Sum_probs=49.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc--ccHHHH---Hhc------CCCEEEeCCCCccccccCCCCCccc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA--RNIEFV---KSL------GADEVLDYKTPDGAALKSPSGRKYD  134 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~--~~~~~~---~~~------g~~~v~~~~~~~~~~~~~~~~~~~d  134 (240)
                      .+.+|||+||+|.+|..+++.+...|.+|+++++.  ...+.+   +..      ....++..+-.+...+.... .++|
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-~~~d  102 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVM-KGVD  102 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHT-TTCS
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHh-cCCC
Confidence            56899999999999999999999999999999963  223222   222      22233322222222121111 2799


Q ss_pred             EEEeCCCC
Q 045248          135 AVIHCATG  142 (240)
Q Consensus       135 ~v~d~~g~  142 (240)
                      +||.+++.
T Consensus       103 ~Vih~A~~  110 (351)
T 3ruf_A          103 HVLHQAAL  110 (351)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99999984

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=97.06  E-value=0.00085  Score=51.48  Aligned_cols=77  Identities=23%  Similarity=0.287  Sum_probs=50.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCC-EEE--eCCCCc--cccccCC--CCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGAD-EVL--DYKTPD--GAALKSP--SGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~-~v~--~~~~~~--~~~~~~~--~~~~~d~v  136 (240)
                      .++++||+||+|++|.++++.+...|++|+.+.++ ++.+.+ ++++.. ..+  |-.+.+  ...++..  ...++|++
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l   87 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDIL   87 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHCCCSEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            67899999999999999999999999999999975 444333 333322 222  222222  1111111  11479999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      +.+.|.
T Consensus        88 v~nAg~   93 (248)
T 3op4_A           88 VNNAGI   93 (248)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999983

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=97.06  E-value=0.0014  Score=51.12  Aligned_cols=77  Identities=17%  Similarity=0.167  Sum_probs=50.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH----HHhcCCCE-EE--eCCCCc--cccccC-CCCCccc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF----VKSLGADE-VL--DYKTPD--GAALKS-PSGRKYD  134 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~----~~~~g~~~-v~--~~~~~~--~~~~~~-~~~~~~d  134 (240)
                      .++++||+||++++|.++++.+...|++|+.++++ ++.+.    +++.+... .+  |..+..  ...++. ....++|
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~iD  111 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIAPVD  111 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhCCCC
Confidence            68999999999999999999999999999999964 43322    23334332 22  222222  111110 0115799


Q ss_pred             EEEeCCCC
Q 045248          135 AVIHCATG  142 (240)
Q Consensus       135 ~v~d~~g~  142 (240)
                      +++.++|.
T Consensus       112 ~lvnnAg~  119 (275)
T 4imr_A          112 ILVINASA  119 (275)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999984

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=97.06  E-value=0.0011  Score=51.73  Aligned_cols=78  Identities=18%  Similarity=0.224  Sum_probs=48.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH----HHhcCCCEE-E--eCCCCc--cccccC--CCCCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF----VKSLGADEV-L--DYKTPD--GAALKS--PSGRK  132 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~----~~~~g~~~v-~--~~~~~~--~~~~~~--~~~~~  132 (240)
                      ..++++||+||+|++|.++++.+...|++|+.+.++ ++.+.    +++.|.... +  |..+..  ...++.  ..-.+
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  101 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFGP  101 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            467899999999999999999999999999999875 44332    233454322 2  222221  111111  01146


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.++|.
T Consensus       102 id~lv~nAg~  111 (279)
T 3sju_A          102 IGILVNSAGR  111 (279)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEECCCC
Confidence            9999999984

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=97.06  E-value=0.00087  Score=50.97  Aligned_cols=75  Identities=15%  Similarity=0.038  Sum_probs=47.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCC--EEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNT--HVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      .++++||+||+|++|..+++.+...|+  +|++++++ ++.+....-+. ..+..+-.+...+...- .++|++|.++|.
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~-~~~~~D~~d~~~~~~~~-~~~d~vi~~ag~   94 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNV-NQEVVDFEKLDDYASAF-QGHDVGFCCLGT   94 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGC-EEEECCGGGGGGGGGGG-SSCSEEEECCCC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCc-eEEecCcCCHHHHHHHh-cCCCEEEECCCc
Confidence            467899999999999999999888999  99999964 33221111122 22221111111221111 369999999985

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=97.05  E-value=0.002  Score=49.33  Aligned_cols=77  Identities=17%  Similarity=0.201  Sum_probs=50.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc--ccHH-HHHhcCCCE-EE--eCCCCc-c-ccccCC--CCCcccE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA--RNIE-FVKSLGADE-VL--DYKTPD-G-AALKSP--SGRKYDA  135 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~--~~~~-~~~~~g~~~-v~--~~~~~~-~-~~~~~~--~~~~~d~  135 (240)
                      .++++||+||+|++|..+++.+...|++|+.++++  ++.+ .+++.|... .+  |..+.. . ..++..  .-.++|+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   85 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCDI   85 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHcCCCCE
Confidence            57899999999999999999999999999999864  3332 344555432 22  222221 1 111110  1146999


Q ss_pred             EEeCCCC
Q 045248          136 VIHCATG  142 (240)
Q Consensus       136 v~d~~g~  142 (240)
                      ++.++|.
T Consensus        86 lv~nAg~   92 (249)
T 2ew8_A           86 LVNNAGI   92 (249)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999984

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=97.05  E-value=0.00097  Score=51.11  Aligned_cols=77  Identities=19%  Similarity=0.198  Sum_probs=49.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH----HHhcCCCE-EE--eCCCCc-c-ccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF----VKSLGADE-VL--DYKTPD-G-AALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~----~~~~g~~~-v~--~~~~~~-~-~~~~~--~~~~~~  133 (240)
                      .++++||+||+|++|..+++.+...|++|+++.++ ++.+.    +++.+... .+  |..+.+ . ..++.  ....++
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   89 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKV   89 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            57899999999999999999999999999999875 43322    23334332 22  222211 1 11110  011369


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |++|.++|.
T Consensus        90 d~vi~~Ag~   98 (255)
T 1fmc_A           90 DILVNNAGG   98 (255)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=97.05  E-value=0.0011  Score=50.83  Aligned_cols=77  Identities=23%  Similarity=0.249  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-c-ccHHHH----HhcCCCE-EE--eCCCCc--cccccCC--CCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-A-RNIEFV----KSLGADE-VL--DYKTPD--GAALKSP--SGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~-~~~~~~----~~~g~~~-v~--~~~~~~--~~~~~~~--~~~~  132 (240)
                      .++++||+||+|++|.++++.+...|++|+.+.+ + ++.+.+    ++.+... .+  |..+.+  ...++..  .-.+
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFGQ   82 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5689999999999999999999999999999886 4 333322    3335332 22  222221  1111110  1136


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.++|.
T Consensus        83 id~lv~nAg~   92 (246)
T 2uvd_A           83 VDILVNNAGV   92 (246)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=97.05  E-value=0.0011  Score=51.01  Aligned_cols=76  Identities=21%  Similarity=0.179  Sum_probs=48.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCC-EEE--eCCCCc--cccccC--CCCCccc
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGAD-EVL--DYKTPD--GAALKS--PSGRKYD  134 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~-~v~--~~~~~~--~~~~~~--~~~~~~d  134 (240)
                      ++++||+||+|++|..+++.+...|++|+.++++ ++.+.+    ++.|.. ..+  |..+.+  ...++.  ..-+++|
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   81 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD   81 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence            4689999999999999999999999999999875 443322    233432 222  222221  111110  0124699


Q ss_pred             EEEeCCCC
Q 045248          135 AVIHCATG  142 (240)
Q Consensus       135 ~v~d~~g~  142 (240)
                      +++.++|.
T Consensus        82 ~lv~nAg~   89 (256)
T 1geg_A           82 VIVNNAGV   89 (256)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999983

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=97.05  E-value=0.0011  Score=51.82  Aligned_cols=77  Identities=18%  Similarity=0.181  Sum_probs=51.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCCEE-E--eCCCCc--cccccC--CCCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGADEV-L--DYKTPD--GAALKS--PSGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~~v-~--~~~~~~--~~~~~~--~~~~~~d~v  136 (240)
                      .++++||+||++++|.++++.+...|++|+.+.++ ++.+.+ ++.+.... +  |..+..  ...++.  ....++|++
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~l   83 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAFGKIDTL   83 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            67899999999999999999999999999999975 444443 44554322 2  222221  111111  112479999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      +.++|.
T Consensus        84 vnnAg~   89 (281)
T 3zv4_A           84 IPNAGI   89 (281)
T ss_dssp             ECCCCC
T ss_pred             EECCCc
Confidence            999984

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=97.05  E-value=0.0012  Score=51.17  Aligned_cols=78  Identities=14%  Similarity=0.011  Sum_probs=49.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHh-CCCEEEEEeCc-ccHHH----HHhcCC-CEEEeCCCCccc----cccCC--CCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKL-GNTHVTASCGA-RNIEF----VKSLGA-DEVLDYKTPDGA----ALKSP--SGR  131 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~-~g~~v~~~~~~-~~~~~----~~~~g~-~~v~~~~~~~~~----~~~~~--~~~  131 (240)
                      .+++++||+||+|++|..+++.+.. .|++|+.++++ ++.+.    +++.+. ...+..+-.+..    .++..  ...
T Consensus         2 ~~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   81 (276)
T 1wma_A            2 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG   81 (276)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            3678999999999999999988887 99999999975 43322    223343 223322211111    11110  113


Q ss_pred             cccEEEeCCCC
Q 045248          132 KYDAVIHCATG  142 (240)
Q Consensus       132 ~~d~v~d~~g~  142 (240)
                      ++|++|.++|.
T Consensus        82 ~id~li~~Ag~   92 (276)
T 1wma_A           82 GLDVLVNNAGI   92 (276)
T ss_dssp             SEEEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            69999999983

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=97.04  E-value=0.014  Score=45.81  Aligned_cols=95  Identities=17%  Similarity=0.132  Sum_probs=66.2

Q ss_pred             hhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCC
Q 045248           41 GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKT  119 (240)
Q Consensus        41 ~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~  119 (240)
                      .+||+.......+ ++.++.    -.|++++|+|++..+|.-+.+++...|++|+.+.+. ..++               
T Consensus       144 ~~PcTp~gi~~ll-~~~~i~----l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~---------------  203 (301)
T 1a4i_A          144 FIPCTPKGCLELI-KETGVP----IAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLD---------------  203 (301)
T ss_dssp             CCCHHHHHHHHHH-HTTTCC----CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH---------------
T ss_pred             ccCchHHHHHHHH-HHcCCC----CCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcccHH---------------
Confidence            4577666666666 444442    389999999955568999999999999998877532 2221               


Q ss_pred             CccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248          120 PDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       120 ~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                         ..+     ...|+||-++|.+.+ -.-+.++++..++.+|..
T Consensus       204 ---~~~-----~~ADIVI~Avg~p~~-I~~~~vk~GavVIDVgi~  239 (301)
T 1a4i_A          204 ---EEV-----NKGDILVVATGQPEM-VKGEWIKPGAIVIDCGIN  239 (301)
T ss_dssp             ---HHH-----TTCSEEEECCCCTTC-BCGGGSCTTCEEEECCCB
T ss_pred             ---HHh-----ccCCEEEECCCCccc-CCHHHcCCCcEEEEccCC
Confidence               111     347899999997653 233457899999999864

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=97.04  E-value=0.014  Score=45.37  Aligned_cols=96  Identities=17%  Similarity=0.072  Sum_probs=66.4

Q ss_pred             hhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCC
Q 045248           40 SGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYK  118 (240)
Q Consensus        40 a~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~  118 (240)
                      ..+||+.......+ ++.+..    -.|++++|+|++.-+|.-+.+++...|++|+.+.+. ..++..            
T Consensus       137 ~~~PcTp~gi~~ll-~~~~i~----l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~------------  199 (288)
T 1b0a_A          137 RLRPCTPRGIVTLL-ERYNID----TFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHH------------  199 (288)
T ss_dssp             SSCCHHHHHHHHHH-HHTTCC----CTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHH------------
T ss_pred             CCCCCcHHHHHHHH-HHcCCC----CCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchhHHHH------------
Confidence            34577766666666 444442    489999999955568999999999999998887642 222111            


Q ss_pred             CCccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248          119 TPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                            +     ...|+||-++|.+.+ ---+.++++..++.+|..
T Consensus       200 ------~-----~~ADIVI~Avg~p~l-I~~~~vk~GavVIDVgi~  233 (288)
T 1b0a_A          200 ------V-----ENADLLIVAVGKPGF-IPGDWIKEGAIVIDVGIN  233 (288)
T ss_dssp             ------H-----HHCSEEEECSCCTTC-BCTTTSCTTCEEEECCCE
T ss_pred             ------h-----ccCCEEEECCCCcCc-CCHHHcCCCcEEEEccCC
Confidence                  1     247888888887653 223457888888888864

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=97.04  E-value=0.0014  Score=51.28  Aligned_cols=35  Identities=14%  Similarity=0.204  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .++++||+||+|++|.++++.+...|++|+.++++
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~   43 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGADIAICDRC   43 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            67899999999999999999999999999998863

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=97.04  E-value=0.0012  Score=51.67  Aligned_cols=77  Identities=18%  Similarity=0.178  Sum_probs=48.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-Hh---cC-CC-EEE--eCCCCc--cccccC--CCCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KS---LG-AD-EVL--DYKTPD--GAALKS--PSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~---~g-~~-~v~--~~~~~~--~~~~~~--~~~~~  132 (240)
                      .++++||+||+|++|.++++.+...|++|+.++++ ++.+.+ ++   .+ .. ..+  |..+.+  ...++.  ..-++
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  111 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEFAR  111 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            68899999999999999999999999999999975 443332 22   22 22 223  222222  111111  11246


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.++|.
T Consensus       112 iD~lvnnAG~  121 (281)
T 4dry_A          112 LDLLVNNAGS  121 (281)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=97.04  E-value=0.00095  Score=51.99  Aligned_cols=77  Identities=17%  Similarity=0.220  Sum_probs=50.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH----HHhcCCCEEE---eCCCCc--cccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF----VKSLGADEVL---DYKTPD--GAALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~----~~~~g~~~v~---~~~~~~--~~~~~~--~~~~~~  133 (240)
                      .++++||+||+|++|.++++.+...|++|+.+.++ ++.+.    +++.|....+   |..+..  ...++.  ....++
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  104 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGIDV  104 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCCCC
Confidence            68899999999999999999999999999998865 43332    2344543222   222211  111111  112469


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.++|.
T Consensus       105 D~lv~nAg~  113 (271)
T 4ibo_A          105 DILVNNAGI  113 (271)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=97.04  E-value=0.014  Score=45.69  Aligned_cols=97  Identities=20%  Similarity=0.162  Sum_probs=66.1

Q ss_pred             hhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHhcCCCEEEeCCC
Q 045248           41 GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKT  119 (240)
Q Consensus        41 ~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~  119 (240)
                      ..||+...+...+ +..++.    -.|++++|+|.++-+|..+.+++...|+.|+.+.+ ....+..             
T Consensus       144 ~~PcTp~gv~~lL-~~~~i~----l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~l~-------------  205 (300)
T 4a26_A          144 FTPCTAKGVIVLL-KRCGIE----MAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDMI-------------  205 (300)
T ss_dssp             CCCHHHHHHHHHH-HHHTCC----CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHHHH-------------
T ss_pred             CCCCCHHHHHHHH-HHcCCC----CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCchhh-------------
Confidence            3577766666666 444442    38999999996566899999999999999887775 3322200             


Q ss_pred             CccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248          120 PDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       120 ~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                         ...     ...|+||.++|.+.+ ---+.++++..++.+|..
T Consensus       206 ---~~~-----~~ADIVI~Avg~p~~-I~~~~vk~GavVIDvgi~  241 (300)
T 4a26_A          206 ---DYL-----RTADIVIAAMGQPGY-VKGEWIKEGAAVVDVGTT  241 (300)
T ss_dssp             ---HHH-----HTCSEEEECSCCTTC-BCGGGSCTTCEEEECCCE
T ss_pred             ---hhh-----ccCCEEEECCCCCCC-CcHHhcCCCcEEEEEecc
Confidence               001     247888888887543 122457888888888753

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.03  E-value=0.0012  Score=51.10  Aligned_cols=77  Identities=13%  Similarity=0.171  Sum_probs=50.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCCE-EE--eCCCCc--cccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGADE-VL--DYKTPD--GAALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~~-v~--~~~~~~--~~~~~~--~~~~~~  133 (240)
                      .++++||+||++++|.++++.+...|++|+.++++ ++.+.+    ++.|... .+  |..+.+  ...++.  ....++
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   89 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGRV   89 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTSCC
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            68899999999999999999999999999999875 443332    3345332 22  222222  111111  112479


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.+.|.
T Consensus        90 d~lv~nAg~   98 (264)
T 3ucx_A           90 DVVINNAFR   98 (264)
T ss_dssp             SEEEECCCS
T ss_pred             cEEEECCCC
Confidence            999999974

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=97.03  E-value=0.0015  Score=50.84  Aligned_cols=77  Identities=17%  Similarity=0.153  Sum_probs=50.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCC-EEE--eCCCCc--cccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGAD-EVL--DYKTPD--GAALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~-~v~--~~~~~~--~~~~~~--~~~~~~  133 (240)
                      .++++||+||+|++|.++++.+...|++|+.+.++ ++.+.+    ++.|.. ..+  |-.+..  ...++.  ..-.++
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  106 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFGAL  106 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence            67899999999999999999999999999999975 433322    333432 222  222221  111111  011469


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.++|.
T Consensus       107 D~lvnnAg~  115 (270)
T 3ftp_A          107 NVLVNNAGI  115 (270)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999983

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=97.03  E-value=0.0013  Score=51.88  Aligned_cols=35  Identities=20%  Similarity=0.201  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .++++||+||+|++|..+++.+...|++|+.+.++
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~   51 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRK   51 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999999999999999999999999999875

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.03  E-value=0.0052  Score=45.39  Aligned_cols=99  Identities=12%  Similarity=0.145  Sum_probs=65.0

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC-CEEEEEeCc-ccHHHHH----hcCCC--EEEeCCCCcccccc
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN-THVTASCGA-RNIEFVK----SLGAD--EVLDYKTPDGAALK  126 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g-~~v~~~~~~-~~~~~~~----~~g~~--~v~~~~~~~~~~~~  126 (240)
                      ....+     +++++||-+| +| .|..+..+++..+ .+|++++.+ +..+.++    ..|..  .++..+..  ....
T Consensus        34 ~~l~~-----~~~~~vLDiG-~G-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~--~~~~  104 (204)
T 3e05_A           34 SKLRL-----QDDLVMWDIG-AG-SASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAP--EGLD  104 (204)
T ss_dssp             HHTTC-----CTTCEEEEET-CT-TCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTT--TTCT
T ss_pred             HHcCC-----CCCCEEEEEC-CC-CCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChh--hhhh
Confidence            55566     7899999999 56 4888888998864 599999954 5555554    33432  22221111  1111


Q ss_pred             CCCCCcccEEEeCCCC----CCccccccCCCCCcEEEEeCCC
Q 045248          127 SPSGRKYDAVIHCATG----IPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       127 ~~~~~~~d~v~d~~g~----~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                        ....+|+|+.....    ..+..+.+.|+++|+++.....
T Consensus       105 --~~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  144 (204)
T 3e05_A          105 --DLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAVT  144 (204)
T ss_dssp             --TSCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred             --cCCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEecc
Confidence              11469999987653    2267788899999999887654

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=97.02  E-value=0.0018  Score=51.13  Aligned_cols=34  Identities=18%  Similarity=0.114  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      .++++||+||++++|.++++.+...|++|+++++
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~   60 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGADIIAIDV   60 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEec
Confidence            6789999999999999999999999999998875

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=97.02  E-value=0.0022  Score=50.51  Aligned_cols=77  Identities=14%  Similarity=0.102  Sum_probs=50.3

Q ss_pred             CCCeEEEEcCCc--hHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCCEEEeCCCCccc----cccCC--CCCc
Q 045248           66 QQKNILVTAASG--GVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGADEVLDYKTPDGA----ALKSP--SGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g--~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~~v~~~~~~~~~----~~~~~--~~~~  132 (240)
                      .++++||+||+|  ++|.++++.+...|++|+.+.++ +..+.+    ++.+....+..+-.+..    .++..  .-.+
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  108 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEWGS  108 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            678999999887  99999999999999999999865 333322    34454434332222211    11111  1146


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.++|.
T Consensus       109 iD~lVnnAG~  118 (296)
T 3k31_A          109 LDFVVHAVAF  118 (296)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999984

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=97.02  E-value=0.0011  Score=51.25  Aligned_cols=77  Identities=17%  Similarity=0.133  Sum_probs=49.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCC-EEE--eCCCCc--cccccCC--CCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGAD-EVL--DYKTPD--GAALKSP--SGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~-~v~--~~~~~~--~~~~~~~--~~~~~d~v  136 (240)
                      .++++||+||+|++|..+++.+...|++|+.+++. ++.+.+ ++++.. ..+  |..+.+  ...++..  .-+++|++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~l   85 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVL   85 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            57899999999999999999999999999999875 444333 334321 222  222221  1111110  11369999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      +.++|.
T Consensus        86 v~~Ag~   91 (260)
T 1nff_A           86 VNNAGI   91 (260)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999983

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=97.02  E-value=0.0012  Score=51.02  Aligned_cols=78  Identities=15%  Similarity=0.205  Sum_probs=49.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCC---CEEEEEeCc-ccHHHHHh---cCCC-EEE--eCCCCc-c-cccc---CCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGN---THVTASCGA-RNIEFVKS---LGAD-EVL--DYKTPD-G-AALK---SPS  129 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g---~~v~~~~~~-~~~~~~~~---~g~~-~v~--~~~~~~-~-~~~~---~~~  129 (240)
                      -.++++||+||+|++|..+++.+...|   ++|++++++ ++.+.+++   .+.. ..+  |..+.+ . ..++   ...
T Consensus        19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   98 (267)
T 1sny_A           19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVT   98 (267)
T ss_dssp             -CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHHHhhccCCceEEEEecCCChHHHHHHHHHHHHhc
Confidence            367899999999999999999999899   899999965 43333332   2322 222  222222 1 1111   111


Q ss_pred             C-CcccEEEeCCCC
Q 045248          130 G-RKYDAVIHCATG  142 (240)
Q Consensus       130 ~-~~~d~v~d~~g~  142 (240)
                      + .++|++|.++|.
T Consensus        99 g~~~id~li~~Ag~  112 (267)
T 1sny_A           99 KDQGLNVLFNNAGI  112 (267)
T ss_dssp             GGGCCSEEEECCCC
T ss_pred             CCCCccEEEECCCc
Confidence            1 269999999984

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.00  E-value=0.0066  Score=48.85  Aligned_cols=133  Identities=10%  Similarity=0.061  Sum_probs=76.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHH-hC-CCEEEEEeC-c-ccH-HHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCC
Q 045248           67 QKNILVTAASGGVGHYAVQLAK-LG-NTHVTASCG-A-RNI-EFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCAT  141 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~-~~-g~~v~~~~~-~-~~~-~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g  141 (240)
                      .-+|.|+| +|.+|...++.++ .. ++++++++. + ++. +.++++|...+++  +  ...+  ....++|+|+.++.
T Consensus         8 ~~~v~iiG-~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~--~--~~~~--l~~~~~D~V~i~tp   80 (346)
T 3cea_A            8 PLRAAIIG-LGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYT--N--YKDM--IDTENIDAIFIVAP   80 (346)
T ss_dssp             CEEEEEEC-CSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEES--C--HHHH--HTTSCCSEEEECSC
T ss_pred             cceEEEEc-CCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccC--C--HHHH--hcCCCCCEEEEeCC
Confidence            35899999 8999998888776 44 678777763 3 444 3456778655542  1  1111  12246999999998


Q ss_pred             CCC-ccccccCCCCCcEEEEeCCCch---HHHHHHHhhheec-cceeeeEEEcCCHHHHHHHHHHHHCCce
Q 045248          142 GIP-WSTFEPNLGTNGKVIDITPGPS---AMLTFALKKLTFS-KKQLVPLLLIPKRENLDFLVKLVKEGKL  207 (240)
Q Consensus       142 ~~~-~~~~~~~l~~~G~iv~~g~~~~---~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~i  207 (240)
                      ... ...+..+++.| +-|.+..+..   ............+ +..+...+.......+..+.+++++|.+
T Consensus        81 ~~~h~~~~~~al~~G-~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~~~~~~~~r~~p~~~~~~~~i~~g~i  150 (346)
T 3cea_A           81 TPFHPEMTIYAMNAG-LNVFCEKPLGLDFNEVDEMAKVIKSHPNQIFQSGFMRRYDDSYRYAKKIVDNGDI  150 (346)
T ss_dssp             GGGHHHHHHHHHHTT-CEEEECSCCCSCHHHHHHHHHHHHTCTTSCEECCCGGGTCHHHHHHHHHHHTTTT
T ss_pred             hHhHHHHHHHHHHCC-CEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEecccccCHHHHHHHHHHHcCCC
Confidence            755 66666777765 5455553211   1111111111222 3333222222233458888999998865

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.00  E-value=0.0014  Score=50.33  Aligned_cols=101  Identities=19%  Similarity=0.119  Sum_probs=67.2

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhC--CCEEEEEeCc-ccHHHHH----hcCCCEEEeCCCCccccccC
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLG--NTHVTASCGA-RNIEFVK----SLGADEVLDYKTPDGAALKS  127 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~--g~~v~~~~~~-~~~~~~~----~~g~~~v~~~~~~~~~~~~~  127 (240)
                      ....+     .++++||-.| +|. |..+..+++..  +.+|++++.+ +..+.++    ..|....+.....+..  +.
T Consensus        87 ~~~~~-----~~~~~vldiG-~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~~  157 (255)
T 3mb5_A           87 AYAGI-----SPGDFIVEAG-VGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIY--EG  157 (255)
T ss_dssp             HHTTC-----CTTCEEEEEC-CTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGG--GC
T ss_pred             HhhCC-----CCCCEEEEec-CCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchh--hc
Confidence            55666     7899999999 554 88888888884  4599999954 5555554    3454321111222211  11


Q ss_pred             CCCCcccEEEeCCCCC--CccccccCCCCCcEEEEeCCC
Q 045248          128 PSGRKYDAVIHCATGI--PWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       128 ~~~~~~d~v~d~~g~~--~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      .....+|+|+-.....  .+..+.+.|+++|+++.....
T Consensus       158 ~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  196 (255)
T 3mb5_A          158 IEEENVDHVILDLPQPERVVEHAAKALKPGGFFVAYTPC  196 (255)
T ss_dssp             CCCCSEEEEEECSSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred             cCCCCcCEEEECCCCHHHHHHHHHHHcCCCCEEEEEECC
Confidence            2335699999877653  478888899999999877643

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=97.00  E-value=0.0018  Score=50.08  Aligned_cols=77  Identities=19%  Similarity=0.139  Sum_probs=49.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCCE-EE--eCCCCc-c-ccccCC--CCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGADE-VL--DYKTPD-G-AALKSP--SGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~~-v~--~~~~~~-~-~~~~~~--~~~~~  133 (240)
                      .++++||+||+|++|.++++.+...|++|+.+.++ ++.+.+    ++.|... .+  |..+.. . ..++..  .-.++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   85 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKI   85 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            57899999999999999999999999999999865 443332    2334332 22  222221 1 111110  11369


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.++|.
T Consensus        86 d~lv~nAg~   94 (262)
T 1zem_A           86 DFLFNNAGY   94 (262)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=97.00  E-value=0.00085  Score=52.10  Aligned_cols=76  Identities=14%  Similarity=0.101  Sum_probs=48.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEE--eCCCCc--cccccC--CCCCcccEEEe
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVL--DYKTPD--GAALKS--PSGRKYDAVIH  138 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~--~~~~~~--~~~~~~--~~~~~~d~v~d  138 (240)
                      .++++||+||+|++|.++++.+...|++|+.++++ ++.+.+.... ...+  |..+..  ...++.  ...+++|+++.
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvn   93 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALNLPN-TLCAQVDVTDKYTFDTAITRAEKIYGPADAIVN   93 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTTCCTT-EEEEECCTTCHHHHHHHHHHHHHHHCSEEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHhhcCC-ceEEEecCCCHHHHHHHHHHHHHHCCCCCEEEE
Confidence            57899999999999999999999999999999875 3333221111 1122  222211  111111  01137999999


Q ss_pred             CCCC
Q 045248          139 CATG  142 (240)
Q Consensus       139 ~~g~  142 (240)
                      ++|.
T Consensus        94 nAg~   97 (266)
T 3p19_A           94 NAGM   97 (266)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            9984

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=96.99  E-value=0.0013  Score=51.05  Aligned_cols=77  Identities=16%  Similarity=0.201  Sum_probs=49.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHH-HHHhcCC--C-EEEeCCCCcccc----ccC--CCCCccc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIE-FVKSLGA--D-EVLDYKTPDGAA----LKS--PSGRKYD  134 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~-~~~~~g~--~-~v~~~~~~~~~~----~~~--~~~~~~d  134 (240)
                      .++++||+||+|++|..+++.+...|++|+++.+. ++.+ ..++++.  . ..+..+-.+...    ++.  ....++|
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   94 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLD   94 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            57899999999999999999999999999999875 3333 2334432  1 222222111111    110  0113699


Q ss_pred             EEEeCCCC
Q 045248          135 AVIHCATG  142 (240)
Q Consensus       135 ~v~d~~g~  142 (240)
                      ++|.++|.
T Consensus        95 ~li~~Ag~  102 (278)
T 2bgk_A           95 IMFGNVGV  102 (278)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99999983

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=96.98  E-value=0.0033  Score=48.55  Aligned_cols=77  Identities=14%  Similarity=0.136  Sum_probs=51.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH---HHhcCCC-EEE--eCCCCc--cccccC--CCCCccc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF---VKSLGAD-EVL--DYKTPD--GAALKS--PSGRKYD  134 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~---~~~~g~~-~v~--~~~~~~--~~~~~~--~~~~~~d  134 (240)
                      .|+.+||+||++|+|.+.++.+...|++|+.+.++ ++.+.   +++.|.. ..+  |-.+++  ...++.  ..-+++|
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~G~iD   85 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATFGRLD   85 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence            78999999999999999999999999999999964 44333   3344432 222  222222  111111  1124799


Q ss_pred             EEEeCCCC
Q 045248          135 AVIHCATG  142 (240)
Q Consensus       135 ~v~d~~g~  142 (240)
                      ++++++|-
T Consensus        86 iLVNnAGi   93 (258)
T 4gkb_A           86 GLVNNAGV   93 (258)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999983

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=96.98  E-value=0.00098  Score=51.17  Aligned_cols=73  Identities=19%  Similarity=0.130  Sum_probs=48.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEEE--eCCCCc--cccccC--CCCCcccEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVL--DYKTPD--GAALKS--PSGRKYDAVIHC  139 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~--~~~~~~--~~~~~~--~~~~~~d~v~d~  139 (240)
                      .++++||+||+|++|.++++.+...|++|++++++...   ++.+ ...+  |..+.+  ...++.  ....++|+++.+
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~---~~~~-~~~~~~D~~d~~~~~~~~~~~~~~~g~id~lv~~   81 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ---EQYP-FATEVMDVADAAQVAQVCQRLLAETERLDALVNA   81 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCS---SCCS-SEEEECCTTCHHHHHHHHHHHHHHCSCCCEEEEC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhh---hcCC-ceEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            57899999999999999999999999999999875321   2233 2222  222221  111111  012479999999


Q ss_pred             CCC
Q 045248          140 ATG  142 (240)
Q Consensus       140 ~g~  142 (240)
                      +|.
T Consensus        82 Ag~   84 (250)
T 2fwm_X           82 AGI   84 (250)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            984

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.98  E-value=0.00017  Score=54.96  Aligned_cols=95  Identities=17%  Similarity=0.138  Sum_probs=57.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCC-CEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGN-THVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP  144 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g-~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~  144 (240)
                      .++|||+||+|++|..+++.+...| ++|+++.++ ++.+.+...+. .++..+-.+...++..- .++|++|.+.|...
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~-~~~~~Dl~d~~~~~~~~-~~~D~vv~~a~~~~  100 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNS-QIIMGDVLNHAALKQAM-QGQDIVYANLTGED  100 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTE-EEEECCTTCHHHHHHHH-TTCSEEEEECCSTT
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCc-EEEEecCCCHHHHHHHh-cCCCEEEEcCCCCc
Confidence            4689999999999999999999999 799999975 33322111122 22221111211111111 36899999998654


Q ss_pred             c----cccccCCCC--CcEEEEeCC
Q 045248          145 W----STFEPNLGT--NGKVIDITP  163 (240)
Q Consensus       145 ~----~~~~~~l~~--~G~iv~~g~  163 (240)
                      +    +.+++.++.  .+++|.++.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~iV~iSS  125 (236)
T 3qvo_A          101 LDIQANSVIAAMKACDVKRLIFVLS  125 (236)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             hhHHHHHHHHHHHHcCCCEEEEEec
Confidence            2    223333332  368888874

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=96.98  E-value=0.0019  Score=50.37  Aligned_cols=35  Identities=17%  Similarity=0.107  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .++++||+||+|++|.++++.+...|++|+.+.+.
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   46 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGADIIAVDLC   46 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecc
Confidence            68899999999999999999999999999998753

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=96.98  E-value=0.0016  Score=50.08  Aligned_cols=77  Identities=21%  Similarity=0.142  Sum_probs=50.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCCEE-E--eCCCCc-c-ccccCC--CCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGADEV-L--DYKTPD-G-AALKSP--SGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~~v-~--~~~~~~-~-~~~~~~--~~~~~d~v  136 (240)
                      .++++||+||+|++|..+++.+...|++|+.++++ ++.+.+ ++++.... +  |..+.. . ..++..  .-.++|++
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l   84 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVL   84 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            67899999999999999999999999999999875 444333 44453322 2  222211 1 111110  11368999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      +.++|.
T Consensus        85 v~~Ag~   90 (253)
T 1hxh_A           85 VNNAGI   90 (253)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999984

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.98  E-value=0.0014  Score=51.12  Aligned_cols=34  Identities=18%  Similarity=0.131  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      .++++||+||+|++|.++++.+...|++|+.+++
T Consensus        14 ~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r   47 (280)
T 3pgx_A           14 QGRVAFITGAARGQGRSHAVRLAAEGADIIACDI   47 (280)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEec
Confidence            7899999999999999999999999999999875

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=96.98  E-value=0.0015  Score=50.68  Aligned_cols=77  Identities=18%  Similarity=0.221  Sum_probs=50.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-c-ccHH----HHHhcCCC-EEEeCCCCccc----cccC--CCCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-A-RNIE----FVKSLGAD-EVLDYKTPDGA----ALKS--PSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~-~~~~----~~~~~g~~-~v~~~~~~~~~----~~~~--~~~~~  132 (240)
                      .++++||+||+|++|..+++.+...|++|+.+.+ + +..+    .+++.+.. .++..+-.+..    .++.  ....+
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~  107 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSDGG  107 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            6789999999999999999999999999999987 3 2222    22344543 23322222211    1111  11247


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|++|.++|.
T Consensus       108 id~li~nAg~  117 (271)
T 4iin_A          108 LSYLVNNAGV  117 (271)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999984

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=96.97  E-value=0.0011  Score=51.51  Aligned_cols=77  Identities=18%  Similarity=0.256  Sum_probs=50.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----Hh-cCCCE-EE--eCCCCc--cccccC--CCCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KS-LGADE-VL--DYKTPD--GAALKS--PSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~-~g~~~-v~--~~~~~~--~~~~~~--~~~~~  132 (240)
                      .++++||+||+|++|.++++.+...|++|+.+.++ ++.+.+    ++ .+... .+  |..+.+  ...++.  ....+
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   98 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAFGG   98 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            67899999999999999999999999999999975 443332    12 34332 22  223322  111111  11146


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.++|.
T Consensus        99 id~lv~nAg~  108 (266)
T 4egf_A           99 LDVLVNNAGI  108 (266)
T ss_dssp             CSEEEEECCC
T ss_pred             CCEEEECCCc
Confidence            9999999983

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=96.97  E-value=0.0012  Score=51.66  Aligned_cols=39  Identities=26%  Similarity=0.363  Sum_probs=33.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHH
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIE  104 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~  104 (240)
                      .++++||+||+|++|..+++.+...|++|++++++ ++.+
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~   66 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQ   66 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            57899999999999999999999999999999975 4443

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=96.97  E-value=0.0015  Score=52.98  Aligned_cols=35  Identities=20%  Similarity=0.153  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHh--CCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKL--GNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~--~g~~v~~~~~~  100 (240)
                      .+.+|||+||+|.+|..+++.+..  .|++|+++++.
T Consensus         9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~   45 (362)
T 3sxp_A            9 ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKF   45 (362)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECC
Confidence            678999999999999999988887  89999999964

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=96.96  E-value=0.0015  Score=50.45  Aligned_cols=77  Identities=18%  Similarity=0.180  Sum_probs=49.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH----HHhcCCCE-EE--eCCCCc-c-ccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF----VKSLGADE-VL--DYKTPD-G-AALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~----~~~~g~~~-v~--~~~~~~-~-~~~~~--~~~~~~  133 (240)
                      .++++||+||+|++|.++++.+...|++|+.++++ ++.+.    +++.+... .+  |..+.+ . ..++.  ...+++
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   92 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGV   92 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            57899999999999999999999999999999875 44332    22334332 22  222211 1 11111  011369


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.++|.
T Consensus        93 D~lv~~Ag~  101 (260)
T 2zat_A           93 DILVSNAAV  101 (260)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=96.96  E-value=0.0016  Score=50.25  Aligned_cols=76  Identities=13%  Similarity=0.144  Sum_probs=47.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-cc--HHHH-H---hcCCCE-EE--eCCCCc--cccccCC--CCCc
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RN--IEFV-K---SLGADE-VL--DYKTPD--GAALKSP--SGRK  132 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~--~~~~-~---~~g~~~-v~--~~~~~~--~~~~~~~--~~~~  132 (240)
                      ++++||+||+|++|.++++.+...|++|+.+.++ ++  .+.+ +   +.+... .+  |..+..  ...++..  .-.+
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   81 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLGG   81 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5789999999999999998888889999999875 43  3322 2   234322 22  222221  1111110  1136


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.++|.
T Consensus        82 iD~lv~nAg~   91 (258)
T 3a28_C           82 FDVLVNNAGI   91 (258)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=96.96  E-value=0.0027  Score=47.95  Aligned_cols=74  Identities=18%  Similarity=0.204  Sum_probs=47.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCC-EEE--eCCCCc--cccccCCCCCcccEEEeCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGAD-EVL--DYKTPD--GAALKSPSGRKYDAVIHCA  140 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~-~v~--~~~~~~--~~~~~~~~~~~~d~v~d~~  140 (240)
                      +++||+||+|++|.++++.+...|++|+.++++ ++.+.+ ++++.. ..+  |..+..  ...++.. ...+|+++.+.
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~-~~~~d~lv~~A   80 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQL-DSIPSTVVHSA   80 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSC-SSCCSEEEECC
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHH-hhcCCEEEEeC
Confidence            468999999999999999999999999999975 555444 444422 122  222221  1112222 23359999999


Q ss_pred             CC
Q 045248          141 TG  142 (240)
Q Consensus       141 g~  142 (240)
                      |.
T Consensus        81 g~   82 (230)
T 3guy_A           81 GS   82 (230)
T ss_dssp             CC
T ss_pred             Cc
Confidence            83

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=96.96  E-value=0.0013  Score=50.88  Aligned_cols=77  Identities=17%  Similarity=0.153  Sum_probs=49.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH----HHhcCCC-EEEeCCCCccc----cccC---CCCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF----VKSLGAD-EVLDYKTPDGA----ALKS---PSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~----~~~~g~~-~v~~~~~~~~~----~~~~---~~~~~  132 (240)
                      .++++||+||+|++|..+++.+...|++|+.+.++ ++.+.    +++.+.. ..+..+-.+..    .++.   ..+.+
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   92 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGK   92 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            57899999999999999999999999999999875 43332    2233433 22222111111    1111   11257


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|++|.++|.
T Consensus        93 id~li~~Ag~  102 (266)
T 1xq1_A           93 LDILINNLGA  102 (266)
T ss_dssp             CSEEEEECCC
T ss_pred             CcEEEECCCC
Confidence            9999999984

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=96.96  E-value=0.0016  Score=50.75  Aligned_cols=34  Identities=15%  Similarity=0.112  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      .++++||+||++++|.++++.+...|++|+.+++
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r   43 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGADIIAVDI   43 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEec
Confidence            6789999999999999999999999999999875

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=96.95  E-value=0.0019  Score=50.58  Aligned_cols=77  Identities=21%  Similarity=0.281  Sum_probs=49.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCCE-EE--eCCCCc-c-ccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGADE-VL--DYKTPD-G-AALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~~-v~--~~~~~~-~-~~~~~--~~~~~~  133 (240)
                      .++++||+||+|++|..+++.+...|++|+++.++ ++.+.+    ++.+... .+  |..+.+ . ..++.  ....++
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~i  122 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNV  122 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            56899999999999999999999999999997754 443322    3335432 22  222221 1 11111  112469


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |++|.++|.
T Consensus       123 d~li~~Ag~  131 (285)
T 2c07_A          123 DILVNNAGI  131 (285)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=96.95  E-value=0.002  Score=50.45  Aligned_cols=34  Identities=12%  Similarity=0.189  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      .++++||+||+|++|.++++.+...|++|+.+.+
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r   57 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGANIVLNGF   57 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            5789999999999999999999999999999886

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=96.94  E-value=0.0014  Score=50.96  Aligned_cols=35  Identities=11%  Similarity=0.126  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-c
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-A  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~  100 (240)
                      .++++||+||+|++|.++++.+...|++|+.+++ +
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   45 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHS   45 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            5689999999999999999999999999999987 5

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=96.94  E-value=0.0014  Score=50.78  Aligned_cols=35  Identities=26%  Similarity=0.205  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .++++||+||+|++|..+++.+...|++|++++++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   40 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWN   40 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECC
Confidence            57899999999999999999999999999999875

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=96.94  E-value=0.0022  Score=49.92  Aligned_cols=35  Identities=23%  Similarity=0.306  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .++++||+||++++|.++++.+...|++|+.++++
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   39 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGANVAIAAKS   39 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEecc
Confidence            67899999999999999999999999999999864

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=96.94  E-value=0.0013  Score=50.33  Aligned_cols=74  Identities=18%  Similarity=0.118  Sum_probs=47.8

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEE-e--Cc-ccHHHH-Hhc-CCCEEEeCCCCccccccC--CCCCcccEEEe
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTAS-C--GA-RNIEFV-KSL-GADEVLDYKTPDGAALKS--PSGRKYDAVIH  138 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~-~--~~-~~~~~~-~~~-g~~~v~~~~~~~~~~~~~--~~~~~~d~v~d  138 (240)
                      ++++||+||+|++|.++++.+...|++|+.+ .  ++ ++.+.+ +++ +. .+.+...- ...++.  ..-.++|+++.
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~v-~~~~~~~~~~~g~iD~lv~   78 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESENPGT-IALAEQKP-ERLVDATLQHGEAIDTIVS   78 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHSTTE-EECCCCCG-GGHHHHHGGGSSCEEEEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHhCCC-cccCHHHH-HHHHHHHHHHcCCCCEEEE
Confidence            4689999999999999999999999999998 5  64 444433 344 32 23222211 111111  11247999999


Q ss_pred             CCCC
Q 045248          139 CATG  142 (240)
Q Consensus       139 ~~g~  142 (240)
                      ++|.
T Consensus        79 ~Ag~   82 (244)
T 1zmo_A           79 NDYI   82 (244)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            9983

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=96.93  E-value=0.0018  Score=51.07  Aligned_cols=77  Identities=18%  Similarity=0.273  Sum_probs=49.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-Hhc----CCC-EEE--eCCCCc-c-ccccC--CCCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSL----GAD-EVL--DYKTPD-G-AALKS--PSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~----g~~-~v~--~~~~~~-~-~~~~~--~~~~~  132 (240)
                      .++++||+||+|++|..+++.+...|++|+.++++ ++.+.+ +++    +.. ..+  |..+.. . ..++.  ....+
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~  104 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGH  104 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999999999999999875 443322 222    432 222  222211 1 11111  11246


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|++|.++|.
T Consensus       105 id~li~~Ag~  114 (302)
T 1w6u_A          105 PNIVINNAAG  114 (302)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            8999999983

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.93  E-value=0.006  Score=47.32  Aligned_cols=86  Identities=16%  Similarity=0.237  Sum_probs=57.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC-
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP-  144 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~-  144 (240)
                      +++++|+| +|++|.+++..+...|.+|++..++ ++.+.+.++|. .+..+.+     +     ..+|+||+|++... 
T Consensus       118 ~k~vlvlG-aGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~-~~~~~~~-----l-----~~~DiVInaTp~Gm~  185 (269)
T 3phh_A          118 YQNALILG-AGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGC-DCFMEPP-----K-----SAFDLIINATSASLH  185 (269)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTC-EEESSCC-----S-----SCCSEEEECCTTCCC
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCC-eEecHHH-----h-----ccCCEEEEcccCCCC
Confidence            88999999 7999999999999999888888875 66655547774 3333221     1     16999999986321 


Q ss_pred             ----cccc--ccCCCCCcEEEEeCCC
Q 045248          145 ----WSTF--EPNLGTNGKVIDITPG  164 (240)
Q Consensus       145 ----~~~~--~~~l~~~G~iv~~g~~  164 (240)
                          +...  ...++++..++.+...
T Consensus       186 ~~~~l~~~~l~~~l~~~~~v~D~vY~  211 (269)
T 3phh_A          186 NELPLNKEVLKGYFKEGKLAYDLAYG  211 (269)
T ss_dssp             CSCSSCHHHHHHHHHHCSEEEESCCS
T ss_pred             CCCCCChHHHHhhCCCCCEEEEeCCC
Confidence                1110  1145566666665543

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=96.93  E-value=0.0018  Score=50.18  Aligned_cols=35  Identities=29%  Similarity=0.300  Sum_probs=33.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      +|+++||+||++|+|.+.++.+...|++|+.+.++
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~   44 (261)
T 4h15_A           10 RGKRALITAGTKGAGAATVSLFLELGAQVLTTARA   44 (261)
T ss_dssp             TTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECC
Confidence            78999999999999999999999999999999875

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.92  E-value=0.006  Score=41.89  Aligned_cols=75  Identities=12%  Similarity=0.008  Sum_probs=49.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH-hcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK-SLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~-~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      +.+|+|+| +|.+|..+++.+...|.+|++++++ ++.+.++ ++|.. ++..+..+...+....-.++|+|+-+++..
T Consensus         4 ~m~i~IiG-~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~-~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~   80 (140)
T 1lss_A            4 GMYIIIAG-IGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDAL-VINGDCTKIKTLEDAGIEDADMYIAVTGKE   80 (140)
T ss_dssp             -CEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSE-EEESCTTSHHHHHHTTTTTCSEEEECCSCH
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcE-EEEcCCCCHHHHHHcCcccCCEEEEeeCCc
Confidence            46899999 7999999999999899999998865 5555554 34643 332222222222212234689999998864

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=96.92  E-value=0.0021  Score=49.65  Aligned_cols=77  Identities=19%  Similarity=0.176  Sum_probs=49.0

Q ss_pred             CCCeEEEEcCC--chHHHHHHHHHHhCCCEEEEEeCc-c---cHHHHH-hcCCCEEEe--CCCCc-c-ccccCC--CCCc
Q 045248           66 QQKNILVTAAS--GGVGHYAVQLAKLGNTHVTASCGA-R---NIEFVK-SLGADEVLD--YKTPD-G-AALKSP--SGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~--g~vG~~~~~~a~~~g~~v~~~~~~-~---~~~~~~-~~g~~~v~~--~~~~~-~-~~~~~~--~~~~  132 (240)
                      .++++||+||+  |++|..+++.+...|++|+.++++ +   ..+.+. +.+....+.  ..+.+ . ..++..  .-.+
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   86 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGG   86 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            57899999998  999999998888889999999865 3   223332 234333332  22221 1 111110  1136


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.++|.
T Consensus        87 iD~lv~~Ag~   96 (261)
T 2wyu_A           87 LDYLVHAIAF   96 (261)
T ss_dssp             EEEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=96.92  E-value=0.0013  Score=51.09  Aligned_cols=75  Identities=17%  Similarity=0.162  Sum_probs=48.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCC-CEE--E--eCCCCc-c-ccccCCCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGA-DEV--L--DYKTPD-G-AALKSPSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~-~~v--~--~~~~~~-~-~~~~~~~~~~~  133 (240)
                      .++++||+||+|++|.++++.+...|++|+.+.++ ++.+..    ++.+. ..+  +  |..+.. . ..++.  -.++
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~g~i   86 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEK--YPKV   86 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHH--CCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHh--cCCC
Confidence            67899999999999999999999999999999965 433222    22221 121  2  222211 1 11221  2469


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.++|.
T Consensus        87 d~lv~nAg~   95 (267)
T 3t4x_A           87 DILINNLGI   95 (267)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999983

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=96.92  E-value=0.0019  Score=49.92  Aligned_cols=34  Identities=12%  Similarity=0.206  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      .++++||+||++++|.++++.+...|++|+.+.+
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r   43 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESVNLVLHYH   43 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEES
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEec
Confidence            6789999999999999999999999999999875

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=96.92  E-value=0.0018  Score=50.11  Aligned_cols=77  Identities=21%  Similarity=0.193  Sum_probs=49.2

Q ss_pred             CCCeEEEEcCC--chHHHHHHHHHHhCCCEEEEEeCcc-c---HHHH-HhcCCCEEE--eCCCCc--cccccC--CCCCc
Q 045248           66 QQKNILVTAAS--GGVGHYAVQLAKLGNTHVTASCGAR-N---IEFV-KSLGADEVL--DYKTPD--GAALKS--PSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~--g~vG~~~~~~a~~~g~~v~~~~~~~-~---~~~~-~~~g~~~v~--~~~~~~--~~~~~~--~~~~~  132 (240)
                      .++++||+||+  |++|.++++.+...|++|+.++++. .   .+.+ ++.+....+  |..+.+  ...++.  ..-.+
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   87 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPK   87 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCSS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            57899999998  9999999999999999999998643 2   2222 223433333  222222  111111  11247


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.++|.
T Consensus        88 iD~lv~~Ag~   97 (265)
T 1qsg_A           88 FDGFVHSIGF   97 (265)
T ss_dssp             EEEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=96.91  E-value=0.0014  Score=50.28  Aligned_cols=75  Identities=20%  Similarity=0.200  Sum_probs=48.8

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCC-EEE--eCCCCc--cccccCC--CCCcccEEEe
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGAD-EVL--DYKTPD--GAALKSP--SGRKYDAVIH  138 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~-~v~--~~~~~~--~~~~~~~--~~~~~d~v~d  138 (240)
                      ++++|+||+|++|.++++.+...|++|+.+.++ ++.+.+ ++++.. ..+  |..+..  ...++..  .-.++|+++.
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvn   80 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVN   80 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTTTCCCCEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence            368999999999999999999999999999875 444433 344432 222  222222  1111111  1247999999


Q ss_pred             CCCC
Q 045248          139 CATG  142 (240)
Q Consensus       139 ~~g~  142 (240)
                      ++|.
T Consensus        81 nAg~   84 (248)
T 3asu_A           81 NAGL   84 (248)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            9983

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=96.90  E-value=0.0026  Score=49.75  Aligned_cols=77  Identities=16%  Similarity=0.156  Sum_probs=49.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-c-ccHH----HHHhcCCCE-EE--eCCCCc--cccccCC--CCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-A-RNIE----FVKSLGADE-VL--DYKTPD--GAALKSP--SGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~-~~~~----~~~~~g~~~-v~--~~~~~~--~~~~~~~--~~~~  132 (240)
                      .++++||+||+|++|.++++.+...|++|+.+++ + ++.+    .+++.|... .+  |..+..  ...++..  ...+
T Consensus        28 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  107 (280)
T 4da9_A           28 ARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEFGR  107 (280)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHHSC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            6789999999999999999999999999999884 3 3332    223445432 22  222222  1111110  1136


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.++|.
T Consensus       108 iD~lvnnAg~  117 (280)
T 4da9_A          108 IDCLVNNAGI  117 (280)
T ss_dssp             CCEEEEECC-
T ss_pred             CCEEEECCCc
Confidence            9999999984

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=96.90  E-value=0.0024  Score=49.19  Aligned_cols=40  Identities=20%  Similarity=0.084  Sum_probs=34.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF  105 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~  105 (240)
                      .++++||+||+|++|..+++.+...|++|+++.++ ++.+.
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~   46 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQE   46 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHH
Confidence            57899999999999999999999999999999875 44433

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=96.90  E-value=0.0022  Score=49.66  Aligned_cols=35  Identities=23%  Similarity=0.185  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .++++||+||+|++|..+++.+...|++|+.+++.
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   41 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIH   41 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecC
Confidence            57899999999999999999999999999999865

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=96.90  E-value=0.0057  Score=49.08  Aligned_cols=89  Identities=10%  Similarity=0.017  Sum_probs=65.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC-
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI-  143 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-  143 (240)
                      -.|++|.|+| .|.+|...++.++.+|++|++.++....+.+.+.|+..    .+. ...+     ...|+|+-++... 
T Consensus       163 l~g~tvgIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~----~~l-~ell-----~~aDvV~l~~P~t~  231 (335)
T 2g76_A          163 LNGKTLGILG-LGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQ----LPL-EEIW-----PLCDFITVHTPLLP  231 (335)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSSCHHHHHHTTCEE----CCH-HHHG-----GGCSEEEECCCCCT
T ss_pred             CCcCEEEEEe-ECHHHHHHHHHHHHCCCEEEEECCCcchhhhhhcCcee----CCH-HHHH-----hcCCEEEEecCCCH
Confidence            3688999999 99999999999999999999998754335667788642    111 1111     3579999998742 


Q ss_pred             -C---c-cccccCCCCCcEEEEeCCC
Q 045248          144 -P---W-STFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       144 -~---~-~~~~~~l~~~G~iv~~g~~  164 (240)
                       +   + ...+..+++++.++.++..
T Consensus       232 ~t~~li~~~~l~~mk~gailIN~arg  257 (335)
T 2g76_A          232 STTGLLNDNTFAQCKKGVRVVNCARG  257 (335)
T ss_dssp             TTTTSBCHHHHTTSCTTEEEEECSCT
T ss_pred             HHHHhhCHHHHhhCCCCcEEEECCCc
Confidence             1   2 2467789999999988853

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=96.89  E-value=0.0018  Score=50.48  Aligned_cols=101  Identities=18%  Similarity=0.116  Sum_probs=65.9

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhC--CCEEEEEeC-cccHHHHH----hcCCCEEEeCCCCccccccC
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLG--NTHVTASCG-ARNIEFVK----SLGADEVLDYKTPDGAALKS  127 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~--g~~v~~~~~-~~~~~~~~----~~g~~~v~~~~~~~~~~~~~  127 (240)
                      ....+     .++.+||-.| +|. |..++.+++..  +.+|++++. ++..+.++    ..|...-+.....+....  
T Consensus       106 ~~~~~-----~~~~~VLDiG-~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--  176 (277)
T 1o54_A          106 MMLDV-----KEGDRIIDTG-VGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG--  176 (277)
T ss_dssp             HHTTC-----CTTCEEEEEC-CTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC--
T ss_pred             HHhCC-----CCCCEEEEEC-CcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc--
Confidence            55666     7899999999 665 88888899885  459999995 45555554    335311111111221111  


Q ss_pred             CCCCcccEEEeCCCCC--CccccccCCCCCcEEEEeCCC
Q 045248          128 PSGRKYDAVIHCATGI--PWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       128 ~~~~~~d~v~d~~g~~--~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      .....||+|+-.....  .+..+.+.|+++|+++.....
T Consensus       177 ~~~~~~D~V~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (277)
T 1o54_A          177 FDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPT  215 (277)
T ss_dssp             CSCCSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred             ccCCccCEEEECCcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            2335799999766543  377788899999998877653

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=96.89  E-value=0.0024  Score=49.70  Aligned_cols=77  Identities=12%  Similarity=0.074  Sum_probs=49.5

Q ss_pred             CCCeEEEEcCC--chHHHHHHHHHHhCCCEEEEEeCc-c---cHHHHH-hcCCCEEE--eCCCCc--cccccC--CCCCc
Q 045248           66 QQKNILVTAAS--GGVGHYAVQLAKLGNTHVTASCGA-R---NIEFVK-SLGADEVL--DYKTPD--GAALKS--PSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~--g~vG~~~~~~a~~~g~~v~~~~~~-~---~~~~~~-~~g~~~v~--~~~~~~--~~~~~~--~~~~~  132 (240)
                      .++++||+||+  |++|..+++.+...|++|+.++++ +   ..+.++ +.+....+  |..+..  ...++.  ..-.+
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   84 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLGS   84 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            57899999998  999999999999999999999875 3   233332 23432233  222221  111111  01246


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.+.|.
T Consensus        85 id~lv~nAg~   94 (275)
T 2pd4_A           85 LDFIVHSVAF   94 (275)
T ss_dssp             EEEEEECCCC
T ss_pred             CCEEEECCcc
Confidence            9999999984

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.88  E-value=0.0015  Score=51.04  Aligned_cols=39  Identities=23%  Similarity=0.403  Sum_probs=33.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHH
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIE  104 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~  104 (240)
                      .++++||+||+|++|..+++.+...|++|+.++++ ++.+
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~   44 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLE   44 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            57899999999999999999999999999999875 4443

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=96.88  E-value=0.0021  Score=50.26  Aligned_cols=34  Identities=21%  Similarity=0.114  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      .++++||+||++++|.++++.+...|++|+.+++
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~   43 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDI   43 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEec
Confidence            6889999999999999999999999999998874

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=96.88  E-value=0.0018  Score=50.52  Aligned_cols=77  Identities=21%  Similarity=0.345  Sum_probs=49.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-H----hcCCCE-EE--eCCCCc--cccccC--CCCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-K----SLGADE-VL--DYKTPD--GAALKS--PSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~----~~g~~~-v~--~~~~~~--~~~~~~--~~~~~  132 (240)
                      .++++||+||+|++|.++++.+...|++|+.+.++ ++.+.. +    ..|... .+  |..+..  ...++.  ....+
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~  105 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEFGR  105 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            67899999999999999999999999999999875 333222 2    234332 22  222221  111111  01147


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.++|.
T Consensus       106 id~lv~nAg~  115 (277)
T 4fc7_A          106 IDILINCAAG  115 (277)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCcC
Confidence            9999999983

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=96.88  E-value=0.0023  Score=50.38  Aligned_cols=77  Identities=17%  Similarity=0.118  Sum_probs=48.9

Q ss_pred             CCCeEEEEcCCch--HHHHHHHHHHhCCCEEEEEeCcc-cHHHH----HhcCCCEEE--eCCCCc--cccccC--CCCCc
Q 045248           66 QQKNILVTAASGG--VGHYAVQLAKLGNTHVTASCGAR-NIEFV----KSLGADEVL--DYKTPD--GAALKS--PSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~--vG~~~~~~a~~~g~~v~~~~~~~-~~~~~----~~~g~~~v~--~~~~~~--~~~~~~--~~~~~  132 (240)
                      .++++||+||+|+  +|.++++.+...|++|+.+.+++ ..+.+    ++.+....+  |..+.+  ...++.  ....+
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  109 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKWGK  109 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            6889999999865  99999999999999999988653 22222    334432333  222221  111111  11246


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.++|.
T Consensus       110 iD~lVnnAG~  119 (293)
T 3grk_A          110 LDFLVHAIGF  119 (293)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCcc
Confidence            9999999984

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=96.88  E-value=0.0017  Score=49.55  Aligned_cols=38  Identities=24%  Similarity=0.156  Sum_probs=32.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHH
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIE  104 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~  104 (240)
                      ++++||+||+|++|..+++.+...|++|++++++ ++.+
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~   40 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLE   40 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            5789999999999999999999999999999875 4443

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=96.88  E-value=0.0018  Score=49.59  Aligned_cols=77  Identities=23%  Similarity=0.298  Sum_probs=49.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc--ccHHHH----HhcCCC-EEE--eCCCCc--cccccCC--CCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA--RNIEFV----KSLGAD-EVL--DYKTPD--GAALKSP--SGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~--~~~~~~----~~~g~~-~v~--~~~~~~--~~~~~~~--~~~~  132 (240)
                      .++++||+||+|++|..+++.+...|++|++++++  ++.+.+    +..+.. ..+  |..+..  ...++..  .-.+
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   85 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKFGG   85 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999999999999999864  444332    223432 222  222211  1111110  1136


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|++|.++|.
T Consensus        86 id~vi~~Ag~   95 (258)
T 3afn_B           86 IDVLINNAGG   95 (258)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=96.87  E-value=0.0027  Score=49.67  Aligned_cols=77  Identities=13%  Similarity=0.145  Sum_probs=49.0

Q ss_pred             CCCeEEEEcCC--chHHHHHHHHHHhCCCEEEEEeCcc----cHHHHH-hcCCCEEE--eCCCCc-c-ccccC--CCCCc
Q 045248           66 QQKNILVTAAS--GGVGHYAVQLAKLGNTHVTASCGAR----NIEFVK-SLGADEVL--DYKTPD-G-AALKS--PSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~--g~vG~~~~~~a~~~g~~v~~~~~~~----~~~~~~-~~g~~~v~--~~~~~~-~-~~~~~--~~~~~  132 (240)
                      .++++||+||+  |++|.++++.+...|++|+.++++.    ..+.+. +.+....+  |..+.. . ..++.  ..-++
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   99 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENWGS   99 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            57899999998  8999999999999999999998653    222232 23432233  222221 1 11111  01247


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.++|.
T Consensus       100 iD~lv~~Ag~  109 (285)
T 2p91_A          100 LDIIVHSIAY  109 (285)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=96.86  E-value=0.00085  Score=51.17  Aligned_cols=36  Identities=25%  Similarity=0.316  Sum_probs=32.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ..++++||+||+|++|..+++.+...|++|+.++++
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   40 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVV   40 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCC
Confidence            467899999999999999999999999999999875

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=96.86  E-value=0.0021  Score=49.00  Aligned_cols=77  Identities=17%  Similarity=0.165  Sum_probs=47.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEe-Cc-ccHHH----HHhcCCCE-EEeCCCCcccc----ccC--CCCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASC-GA-RNIEF----VKSLGADE-VLDYKTPDGAA----LKS--PSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~-~~-~~~~~----~~~~g~~~-v~~~~~~~~~~----~~~--~~~~~  132 (240)
                      .++++||+||+|++|..+++.+...|++|+++. ++ ++.+.    +++.+... .+..+-.+...    ++.  ....+
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFGR   83 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            568999999999999999999999999999984 43 43332    23345332 22221111111    110  01136


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|++|.++|.
T Consensus        84 ~d~vi~~Ag~   93 (247)
T 2hq1_A           84 IDILVNNAGI   93 (247)
T ss_dssp             CCEEEECC--
T ss_pred             CCEEEECCCC
Confidence            9999999983

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.86  E-value=0.00067  Score=51.55  Aligned_cols=35  Identities=14%  Similarity=0.167  Sum_probs=31.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .++++||+||+|++|.++++.+...|++|+.++++
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~   36 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLS   36 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecC
Confidence            35789999999999999999999999999999875

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.85  E-value=0.00091  Score=53.50  Aligned_cols=78  Identities=18%  Similarity=0.213  Sum_probs=47.9

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-cc-HHHHHhcCCCEEEeCCCCcccccc-CCCCCcccEEEeCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RN-IEFVKSLGADEVLDYKTPDGAALK-SPSGRKYDAVIHCAT  141 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~-~~~~~~~g~~~v~~~~~~~~~~~~-~~~~~~~d~v~d~~g  141 (240)
                      -.+.+|||+||+|.+|..+++.+...|++|+++++. .. .+.++++....++..+-.+...+. .....++|+||.++|
T Consensus        18 ~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~   97 (330)
T 2pzm_A           18 GSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHSAA   97 (330)
T ss_dssp             TTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEECCc
Confidence            457899999999999999999888889999999973 22 211122221122222111111111 111117999999998


Q ss_pred             C
Q 045248          142 G  142 (240)
Q Consensus       142 ~  142 (240)
                      .
T Consensus        98 ~   98 (330)
T 2pzm_A           98 A   98 (330)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=96.85  E-value=0.0014  Score=50.52  Aligned_cols=77  Identities=18%  Similarity=0.201  Sum_probs=48.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-c-ccHHH----HHhcCCC-EEE--eCCCCc--cccccCC--CCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-A-RNIEF----VKSLGAD-EVL--DYKTPD--GAALKSP--SGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~-~~~~~----~~~~g~~-~v~--~~~~~~--~~~~~~~--~~~~  132 (240)
                      .++++||+||+|++|..+++.+...|++|+.+.+ + ++.+.    +++.+.. ..+  |..+.+  ...++..  .-.+
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   85 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGK   85 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999988889999999887 4 33322    2233432 222  222211  1111110  1136


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|++|.++|.
T Consensus        86 id~li~~Ag~   95 (261)
T 1gee_A           86 LDVMINNAGL   95 (261)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999983

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=96.85  E-value=0.0015  Score=50.07  Aligned_cols=101  Identities=12%  Similarity=0.098  Sum_probs=66.2

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhC--CCEEEEEeC-cccHHHHHhc-----CCCEEEeCCCCcccccc
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLG--NTHVTASCG-ARNIEFVKSL-----GADEVLDYKTPDGAALK  126 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~--g~~v~~~~~-~~~~~~~~~~-----g~~~v~~~~~~~~~~~~  126 (240)
                      ....+     .++++||-.| +|. |..+..+++..  +.+|++++. ++..+.+++.     |...+ .....+.... 
T Consensus        90 ~~~~~-----~~~~~vLdiG-~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v-~~~~~d~~~~-  160 (258)
T 2pwy_A           90 TLLDL-----APGMRVLEAG-TGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENV-RFHLGKLEEA-  160 (258)
T ss_dssp             HHTTC-----CTTCEEEEEC-CTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCE-EEEESCGGGC-
T ss_pred             HHcCC-----CCCCEEEEEC-CCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCE-EEEECchhhc-
Confidence            55566     7999999999 664 88888888885  469999995 4666666433     53222 1111111111 


Q ss_pred             CCCCCcccEEEeCCCCC--CccccccCCCCCcEEEEeCCC
Q 045248          127 SPSGRKYDAVIHCATGI--PWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       127 ~~~~~~~d~v~d~~g~~--~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      ......+|+|+-.....  .+..+.+.|+++|+++.+...
T Consensus       161 ~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  200 (258)
T 2pwy_A          161 ELEEAAYDGVALDLMEPWKVLEKAALALKPDRFLVAYLPN  200 (258)
T ss_dssp             CCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESC
T ss_pred             CCCCCCcCEEEECCcCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            12235799999766543  377788899999999887654

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.85  E-value=0.0014  Score=51.68  Aligned_cols=38  Identities=21%  Similarity=0.357  Sum_probs=33.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccH
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNI  103 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~  103 (240)
                      .++++||+||+|++|.++++.+...|++|+.++++ ++.
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~   63 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRL   63 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence            57899999999999999999999999999999875 443

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.85  E-value=0.0011  Score=51.74  Aligned_cols=39  Identities=23%  Similarity=0.326  Sum_probs=33.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHH
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIE  104 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~  104 (240)
                      .++++||+||+|++|..+++.+...|++|+.++++ ++.+
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~   44 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLE   44 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            57899999999999999999999999999999875 4443

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=96.85  E-value=0.003  Score=49.12  Aligned_cols=77  Identities=19%  Similarity=0.266  Sum_probs=49.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-c-ccHHH----HHhcCCCEE-E--eCCCCc--cccccC--CCCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-A-RNIEF----VKSLGADEV-L--DYKTPD--GAALKS--PSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~-~~~~~----~~~~g~~~v-~--~~~~~~--~~~~~~--~~~~~  132 (240)
                      .++++||+||+|++|.++++.+...|++|+.+.+ + ++.+.    +++.|.... +  |..+.+  ...++.  ....+
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  109 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEALGG  109 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            6889999999999999999999999999998864 3 33322    234454322 2  222211  111111  01136


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.++|.
T Consensus       110 iD~lvnnAg~  119 (271)
T 3v2g_A          110 LDILVNSAGI  119 (271)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEECCCC
Confidence            9999999983

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=96.84  E-value=0.0017  Score=50.41  Aligned_cols=77  Identities=17%  Similarity=0.217  Sum_probs=49.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-c-ccHHH----HHhcCCCE-EE--eCCCCc--cccccC--CCCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-A-RNIEF----VKSLGADE-VL--DYKTPD--GAALKS--PSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~-~~~~~----~~~~g~~~-v~--~~~~~~--~~~~~~--~~~~~  132 (240)
                      .++++||+||+|++|.++++.+...|++|+.+.+ + ++.+.    +++.+... .+  |..+..  ...++.  ..-.+
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~  106 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWGR  106 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            6789999999999999999999999999998885 3 33332    23445432 22  222221  111111  01147


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.++|.
T Consensus       107 id~lv~nAg~  116 (269)
T 4dmm_A          107 LDVLVNNAGI  116 (269)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=96.84  E-value=0.0026  Score=48.70  Aligned_cols=99  Identities=18%  Similarity=0.131  Sum_probs=62.2

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH----hcCCCEEEeCCCCccccccCCC
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK----SLGADEVLDYKTPDGAALKSPS  129 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~----~~g~~~v~~~~~~~~~~~~~~~  129 (240)
                      ....+     +++.+||-+| +|. |..+..+++..|.+|++++.+ +..+.++    +.|...-+.....+.....  .
T Consensus        30 ~~~~~-----~~~~~VLDiG-cG~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~  100 (256)
T 1nkv_A           30 RVLRM-----KPGTRILDLG-SGS-GEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV--A  100 (256)
T ss_dssp             HHTCC-----CTTCEEEEET-CTT-CHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC--C
T ss_pred             HhcCC-----CCCCEEEEEC-CCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCC--c
Confidence            55566     7899999999 554 778888998889999999954 5555443    3443211111111111111  1


Q ss_pred             CCcccEEEeCCC-----C--CCccccccCCCCCcEEEEeC
Q 045248          130 GRKYDAVIHCAT-----G--IPWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       130 ~~~~d~v~d~~g-----~--~~~~~~~~~l~~~G~iv~~g  162 (240)
                      ...||+|+-.-.     .  ..+..+.+.|+|+|+++...
T Consensus       101 ~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A          101 NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE  140 (256)
T ss_dssp             SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEec
Confidence            467999985221     1  12677888999999988754

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=96.83  E-value=0.0018  Score=50.11  Aligned_cols=77  Identities=27%  Similarity=0.354  Sum_probs=48.6

Q ss_pred             CCCeEEEEcCCc-hHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCC-C-EEE--eCCCCc--cccccCC--CCC
Q 045248           66 QQKNILVTAASG-GVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGA-D-EVL--DYKTPD--GAALKSP--SGR  131 (240)
Q Consensus        66 ~g~~vlV~G~~g-~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~-~-~v~--~~~~~~--~~~~~~~--~~~  131 (240)
                      .++++||+||+| ++|..+++.+...|++|+.+++. ++.+.+    ++.+. . ..+  |..+..  ...++..  ...
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  100 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKAG  100 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHhC
Confidence            678999999876 89999999999999999999975 443332    23332 2 222  222221  1111110  113


Q ss_pred             cccEEEeCCCC
Q 045248          132 KYDAVIHCATG  142 (240)
Q Consensus       132 ~~d~v~d~~g~  142 (240)
                      ++|++|.++|-
T Consensus       101 ~id~li~~Ag~  111 (266)
T 3o38_A          101 RLDVLVNNAGL  111 (266)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCcEEEECCCc
Confidence            69999999983

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=96.83  E-value=0.023  Score=44.07  Aligned_cols=96  Identities=18%  Similarity=0.123  Sum_probs=63.9

Q ss_pred             hhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhC--CCEEEEEeCc-ccHHHHHhcCCCEEEe
Q 045248           40 SGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLG--NTHVTASCGA-RNIEFVKSLGADEVLD  116 (240)
Q Consensus        40 a~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~--g~~v~~~~~~-~~~~~~~~~g~~~v~~  116 (240)
                      ..+||+...+...+. ..++.    -.|++++|+|++.-+|..+.+++...  |++|+.+.+. +.++.           
T Consensus       136 ~~~PcTp~gi~~ll~-~~~i~----l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t~~L~~-----------  199 (281)
T 2c2x_A          136 APLPCTPRGIVHLLR-RYDIS----IAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRDLPA-----------  199 (281)
T ss_dssp             CCCCHHHHHHHHHHH-HTTCC----CTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTCSCHHH-----------
T ss_pred             CCCCChHHHHHHHHH-HcCCC----CCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECchhHHHH-----------
Confidence            345777666666663 33432    38999999995445799999999998  8888876532 22111           


Q ss_pred             CCCCccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCC
Q 045248          117 YKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       117 ~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                             .+     ...|++|-++|.+.+ ---+.++++..++.+|..
T Consensus       200 -------~~-----~~ADIVI~Avg~p~~-I~~~~vk~GavVIDVgi~  234 (281)
T 2c2x_A          200 -------LT-----RQADIVVAAVGVAHL-LTADMVRPGAAVIDVGVS  234 (281)
T ss_dssp             -------HH-----TTCSEEEECSCCTTC-BCGGGSCTTCEEEECCEE
T ss_pred             -------HH-----hhCCEEEECCCCCcc-cCHHHcCCCcEEEEccCC
Confidence                   11     347888888887653 333457888888887754

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=96.83  E-value=0.0018  Score=49.78  Aligned_cols=77  Identities=21%  Similarity=0.210  Sum_probs=48.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCE-EEEEeCcc---cHHHHHhc--CCC-EEE--eCCCC-c-c-ccccCC--CCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTH-VTASCGAR---NIEFVKSL--GAD-EVL--DYKTP-D-G-AALKSP--SGR  131 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~-v~~~~~~~---~~~~~~~~--g~~-~v~--~~~~~-~-~-~~~~~~--~~~  131 (240)
                      .+++++|+||+|++|..+++.+...|++ |+.+.++.   ..+.+++.  +.. ..+  |..+. + . ..++..  .-.
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g   83 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLK   83 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhcC
Confidence            5789999999999999999999999995 88888653   23333332  211 122  32322 1 1 111110  113


Q ss_pred             cccEEEeCCCC
Q 045248          132 KYDAVIHCATG  142 (240)
Q Consensus       132 ~~d~v~d~~g~  142 (240)
                      ++|++|.++|.
T Consensus        84 ~id~lv~~Ag~   94 (254)
T 1sby_A           84 TVDILINGAGI   94 (254)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            69999999984

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=96.82  E-value=0.0016  Score=51.97  Aligned_cols=34  Identities=21%  Similarity=0.265  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      .++++||+||+|++|.++++.+...|++|+.+++
T Consensus        26 ~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r   59 (322)
T 3qlj_A           26 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDI   59 (322)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            6789999999999999999999999999999874

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=96.82  E-value=0.001  Score=51.19  Aligned_cols=74  Identities=7%  Similarity=-0.060  Sum_probs=47.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH---HhcCCCEEEeCCCCc-cccccCC--CCCcccEEEeCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV---KSLGADEVLDYKTPD-GAALKSP--SGRKYDAVIHCA  140 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~---~~~g~~~v~~~~~~~-~~~~~~~--~~~~~d~v~d~~  140 (240)
                      +++||+||+|++|..+++.+...|++|+.++++ ++.+.+   ++.|.....- +..+ ...++..  .-.++|+++.+.
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~-d~~~v~~~~~~~~~~~g~iD~lv~nA   80 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPM-SEQEPAELIEAVTSAYGQVDVLVSND   80 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHCTTSEEC-CCCSHHHHHHHHHHHHSCCCEEEEEC
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCcEEEE-CHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            468999999999999999999999999999864 544433   2334332211 2222 1111110  114799999999


Q ss_pred             CC
Q 045248          141 TG  142 (240)
Q Consensus       141 g~  142 (240)
                      |.
T Consensus        81 g~   82 (254)
T 1zmt_A           81 IF   82 (254)
T ss_dssp             CC
T ss_pred             Cc
Confidence            84

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=96.81  E-value=0.0021  Score=47.38  Aligned_cols=61  Identities=21%  Similarity=0.269  Sum_probs=41.7

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEEEeCCCCc--cccccCCCCCcccEEEeCCC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCAT  141 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g  141 (240)
                      ++||+||+|++|..+++.+. .|++|+.+.++..         ....|..+.+  ...++..  .++|+++.++|
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~---------~~~~D~~~~~~~~~~~~~~--~~~d~vi~~ag   67 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-KKAEVITAGRHSG---------DVTVDITNIDSIKKMYEQV--GKVDAIVSATG   67 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS---------SEECCTTCHHHHHHHHHHH--CCEEEEEECCC
T ss_pred             EEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc---------ceeeecCCHHHHHHHHHHh--CCCCEEEECCC
Confidence            79999999999999998888 8999999987532         1122322222  1112111  36899999887

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=96.81  E-value=0.0037  Score=48.81  Aligned_cols=97  Identities=11%  Similarity=0.016  Sum_probs=61.6

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHh----cCCCEEEeCCCCccccccCCC
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKS----LGADEVLDYKTPDGAALKSPS  129 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~  129 (240)
                      +..++     +++.+||-+| +| .|..+..+++..|++|++++.+ +..+.+++    .|...-+.....+..   ...
T Consensus        58 ~~~~~-----~~~~~vLDiG-cG-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~---~~~  127 (287)
T 1kpg_A           58 GKLGL-----QPGMTLLDVG-CG-WGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE---QFD  127 (287)
T ss_dssp             TTTTC-----CTTCEEEEET-CT-TSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG---GCC
T ss_pred             HHcCC-----CCcCEEEEEC-Cc-ccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChh---hCC
Confidence            55556     7899999998 55 4778888887779999999954 55555543    332111111111111   112


Q ss_pred             CCcccEEEeC-----CCCC----CccccccCCCCCcEEEEeC
Q 045248          130 GRKYDAVIHC-----ATGI----PWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       130 ~~~~d~v~d~-----~g~~----~~~~~~~~l~~~G~iv~~g  162 (240)
                       ..||+|+..     ++.+    .+..+.+.|+|+|+++...
T Consensus       128 -~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  168 (287)
T 1kpg_A          128 -EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT  168 (287)
T ss_dssp             -CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             -CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence             679999864     2221    2667778899999988654

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=96.81  E-value=0.0029  Score=50.95  Aligned_cols=77  Identities=17%  Similarity=0.124  Sum_probs=48.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhC-CC-EEEEEeCc-ccHHHH-HhcCC--CEEEeCCCCccccccCCCCCcccEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLG-NT-HVTASCGA-RNIEFV-KSLGA--DEVLDYKTPDGAALKSPSGRKYDAVIHC  139 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~-g~-~v~~~~~~-~~~~~~-~~~g~--~~v~~~~~~~~~~~~~~~~~~~d~v~d~  139 (240)
                      .+++|||+||+|.+|..+++.+... |. +|++++++ .+.+.+ +.+..  ...+..+-.+...+...- .++|+||.+
T Consensus        20 ~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~-~~~D~Vih~   98 (344)
T 2gn4_A           20 DNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYAL-EGVDICIHA   98 (344)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHT-TTCSEEEEC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHH-hcCCEEEEC
Confidence            5789999999999999998877776 98 99999975 444333 23321  122221111211111111 369999999


Q ss_pred             CCCC
Q 045248          140 ATGI  143 (240)
Q Consensus       140 ~g~~  143 (240)
                      ++..
T Consensus        99 Aa~~  102 (344)
T 2gn4_A           99 AALK  102 (344)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9843

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=96.81  E-value=0.0029  Score=48.78  Aligned_cols=77  Identities=18%  Similarity=0.281  Sum_probs=48.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEe-Cc-ccHH----HHHhcCCC-EEEe--CCCCc--cccccCC--CCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASC-GA-RNIE----FVKSLGAD-EVLD--YKTPD--GAALKSP--SGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~-~~-~~~~----~~~~~g~~-~v~~--~~~~~--~~~~~~~--~~~~  132 (240)
                      .++++||+||+|++|.++++.+...|++|+.+. ++ ++.+    .+++.|.. ..+.  -.+..  ...++..  .-.+
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   86 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKFGE   86 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            678999999999999999999999999999885 33 3222    22344533 2232  22221  1111111  1146


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.+.|.
T Consensus        87 id~lv~nAg~   96 (259)
T 3edm_A           87 IHGLVHVAGG   96 (259)
T ss_dssp             EEEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999973

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=96.81  E-value=0.0019  Score=49.81  Aligned_cols=78  Identities=19%  Similarity=0.252  Sum_probs=49.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEE-eCc-ccHHH----HHhcCCCEE-E--eCCCCc--cccccC--CCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTAS-CGA-RNIEF----VKSLGADEV-L--DYKTPD--GAALKS--PSGR  131 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~-~~~-~~~~~----~~~~g~~~v-~--~~~~~~--~~~~~~--~~~~  131 (240)
                      ..++++||+||+|++|.++++.+...|++|+.+ .++ ++.+.    +++.|.... +  |-.+.+  ...++.  ....
T Consensus         2 ~~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (258)
T 3oid_A            2 EQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFG   81 (258)
T ss_dssp             -CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            367899999999999999999999999999887 554 33332    234454322 2  222221  111111  0114


Q ss_pred             cccEEEeCCCC
Q 045248          132 KYDAVIHCATG  142 (240)
Q Consensus       132 ~~d~v~d~~g~  142 (240)
                      ++|+++.++|.
T Consensus        82 ~id~lv~nAg~   92 (258)
T 3oid_A           82 RLDVFVNNAAS   92 (258)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999983

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=96.81  E-value=0.022  Score=44.26  Aligned_cols=93  Identities=13%  Similarity=0.080  Sum_probs=58.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccH-HHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNI-EFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~-~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      ++++++|+| +|++|.++++.+...|++|++..++ ++. +.+++++....++..+.  ..+..   .++|++++++|..
T Consensus       118 ~~k~vlViG-aGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~--~~~~~---~~~DivVn~t~~~  191 (271)
T 1nyt_A          118 PGLRILLIG-AGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSM--DELEG---HEFDLIINATSSG  191 (271)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCS--GGGTT---CCCSEEEECCSCG
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecH--HHhcc---CCCCEEEECCCCC
Confidence            678999999 5999999999999999999888875 554 34455543100111111  11111   5799999999853


Q ss_pred             Ccc----ccccCCCCCcEEEEeCCC
Q 045248          144 PWS----TFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       144 ~~~----~~~~~l~~~G~iv~~g~~  164 (240)
                      ...    .....++++..++.+...
T Consensus       192 ~~~~~~~i~~~~l~~~~~v~D~~y~  216 (271)
T 1nyt_A          192 ISGDIPAIPSSLIHPGIYCYDMFYQ  216 (271)
T ss_dssp             GGTCCCCCCGGGCCTTCEEEESCCC
T ss_pred             CCCCCCCCCHHHcCCCCEEEEeccC
Confidence            321    112345666667776654

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=96.80  E-value=0.0023  Score=50.97  Aligned_cols=34  Identities=21%  Similarity=0.129  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      .++++||+||+|++|.++++.+...|++|+++++
T Consensus        45 ~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~   78 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRLAQDGADIVAIDL   78 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEec
Confidence            6789999999999999999999999999998864

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=96.80  E-value=0.0033  Score=48.74  Aligned_cols=77  Identities=18%  Similarity=0.180  Sum_probs=48.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-c-ccHHH----HHhcCCCEE-E--eCCCCc--cccccC--CCCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-A-RNIEF----VKSLGADEV-L--DYKTPD--GAALKS--PSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~-~~~~~----~~~~g~~~v-~--~~~~~~--~~~~~~--~~~~~  132 (240)
                      .++++||+||+|++|.++++.+...|++|+.+.+ + ++.+.    ++..|.... +  |..+.+  ...++.  ....+
T Consensus        26 ~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  105 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAFGG  105 (267)
T ss_dssp             -CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            6789999999999999999988888999988753 3 33332    234454322 2  222221  111111  11147


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.++|.
T Consensus       106 iD~lvnnAG~  115 (267)
T 3u5t_A          106 VDVLVNNAGI  115 (267)
T ss_dssp             EEEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999983

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=96.79  E-value=0.0017  Score=51.83  Aligned_cols=78  Identities=18%  Similarity=0.171  Sum_probs=47.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-cc--HHHHHhcC--C-CEEEeCCCCccccc-cCCCCCcccEEE
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RN--IEFVKSLG--A-DEVLDYKTPDGAAL-KSPSGRKYDAVI  137 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~--~~~~~~~g--~-~~v~~~~~~~~~~~-~~~~~~~~d~v~  137 (240)
                      .++.+|||+||+|.+|..+++.+...|.+|+++++. .+  .+.++.+.  . ..++..+-.+...+ +...+.++|+||
T Consensus        12 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~Vi   91 (335)
T 1rpn_A           12 SMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVY   91 (335)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             ccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhhccccCceEEEECCCCCHHHHHHHHHHcCCCEEE
Confidence            688999999999999999999988899999999964 22  23333331  1 12222211111111 111112589999


Q ss_pred             eCCCC
Q 045248          138 HCATG  142 (240)
Q Consensus       138 d~~g~  142 (240)
                      .++|.
T Consensus        92 h~A~~   96 (335)
T 1rpn_A           92 NLAAQ   96 (335)
T ss_dssp             ECCSC
T ss_pred             ECccc
Confidence            99984

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=96.78  E-value=0.0031  Score=47.96  Aligned_cols=74  Identities=22%  Similarity=0.229  Sum_probs=46.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhC--CCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLG--NTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~--g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      .+++|||+||+|.+|..+++.+...  |++|+++.++ ++.+.+ ..+.. ++..+-.+...+...- .++|+||.++|.
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~-~~~~~-~~~~D~~d~~~~~~~~-~~~d~vi~~a~~   79 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-GGEAD-VFIGDITDADSINPAF-QGIDALVILTSA   79 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-TCCTT-EEECCTTSHHHHHHHH-TTCSEEEECCCC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc-CCCee-EEEecCCCHHHHHHHH-cCCCEEEEeccc
Confidence            5688999999999999999888888  7899999875 333322 11222 2221111111111111 258999999984

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.78  E-value=0.0021  Score=49.38  Aligned_cols=78  Identities=24%  Similarity=0.214  Sum_probs=48.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEe-Cc-ccH----HHHHhcCCC-EEEeCCCCcc----ccccC--CCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASC-GA-RNI----EFVKSLGAD-EVLDYKTPDG----AALKS--PSGR  131 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~-~~-~~~----~~~~~~g~~-~v~~~~~~~~----~~~~~--~~~~  131 (240)
                      .+++++||+||+|++|..+++.+...|++|+.++ ++ ++.    +.+++.+.. ..+..+-.+.    ..++.  ....
T Consensus        11 ~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   90 (256)
T 3ezl_A           11 MSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAEVG   90 (256)
T ss_dssp             --CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHhcC
Confidence            5789999999999999999999999999999887 33 332    223344533 2332221121    11111  1124


Q ss_pred             cccEEEeCCCC
Q 045248          132 KYDAVIHCATG  142 (240)
Q Consensus       132 ~~d~v~d~~g~  142 (240)
                      ++|+++.++|.
T Consensus        91 ~id~lv~~Ag~  101 (256)
T 3ezl_A           91 EIDVLVNNAGI  101 (256)
T ss_dssp             CEEEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999983

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=96.77  E-value=0.0046  Score=49.03  Aligned_cols=89  Identities=16%  Similarity=0.083  Sum_probs=64.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP  144 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~  144 (240)
                      -.|++|.|+| .|.+|...++.++.+|++|++.++..+.+.+.+.|+..+    +. ...+     ...|+|+-++....
T Consensus       140 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~----~l-~ell-----~~aDvV~l~~p~~~  208 (307)
T 1wwk_A          140 LEGKTIGIIG-FGRIGYQVAKIANALGMNILLYDPYPNEERAKEVNGKFV----DL-ETLL-----KESDVVTIHVPLVE  208 (307)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCEEC----CH-HHHH-----HHCSEEEECCCCST
T ss_pred             cCCceEEEEc-cCHHHHHHHHHHHHCCCEEEEECCCCChhhHhhcCcccc----CH-HHHH-----hhCCEEEEecCCCh
Confidence            3688999999 999999999999999999999997543366677776321    11 1111     24799999987421


Q ss_pred             -----c-cccccCCCCCcEEEEeCCC
Q 045248          145 -----W-STFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       145 -----~-~~~~~~l~~~G~iv~~g~~  164 (240)
                           + ...+..+++++.++.++..
T Consensus       209 ~t~~li~~~~l~~mk~ga~lin~arg  234 (307)
T 1wwk_A          209 STYHLINEERLKLMKKTAILINTSRG  234 (307)
T ss_dssp             TTTTCBCHHHHHHSCTTCEEEECSCG
T ss_pred             HHhhhcCHHHHhcCCCCeEEEECCCC
Confidence                 2 2355678999999988763

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=96.76  E-value=0.002  Score=49.87  Aligned_cols=77  Identities=23%  Similarity=0.231  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-c-ccHHH----HHhcCCCE-EE--eCCCCc-c-ccccCC--CCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-A-RNIEF----VKSLGADE-VL--DYKTPD-G-AALKSP--SGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~-~~~~~----~~~~g~~~-v~--~~~~~~-~-~~~~~~--~~~~  132 (240)
                      .++++||+||+|++|..+++.+...|++|+++.+ + ++.+.    +++.+... .+  |..+.+ . ..++..  .-.+
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   99 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFGG   99 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999999886 4 33322    23345432 22  222211 1 111110  1136


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.++|.
T Consensus       100 ~d~vi~~Ag~  109 (274)
T 1ja9_A          100 LDFVMSNSGM  109 (274)
T ss_dssp             EEEEECCCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=96.74  E-value=0.0028  Score=50.67  Aligned_cols=34  Identities=32%  Similarity=0.351  Sum_probs=30.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      .++++||+||+|++|.++++.+...|++|+++.+
T Consensus         4 ~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r   37 (324)
T 3u9l_A            4 SKKIILITGASSGFGRLTAEALAGAGHRVYASMR   37 (324)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecC
Confidence            4688999999999999999999999999999875

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=96.74  E-value=0.0024  Score=50.12  Aligned_cols=77  Identities=18%  Similarity=0.266  Sum_probs=48.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCC---EEEEEeCc-ccHHHHH-hc-----CCC-EEE--eCCCCc--cccccCC--
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNT---HVTASCGA-RNIEFVK-SL-----GAD-EVL--DYKTPD--GAALKSP--  128 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~---~v~~~~~~-~~~~~~~-~~-----g~~-~v~--~~~~~~--~~~~~~~--  128 (240)
                      .++++||+||+|++|.++++.+...|+   +|+.+.++ ++.+.+. ++     +.. ..+  |..+.+  ...++..  
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  111 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ  111 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            678999999999999998877766666   99998875 4444332 21     322 122  223322  1111111  


Q ss_pred             CCCcccEEEeCCCC
Q 045248          129 SGRKYDAVIHCATG  142 (240)
Q Consensus       129 ~~~~~d~v~d~~g~  142 (240)
                      .-+++|+++.++|.
T Consensus       112 ~~g~iD~lVnnAG~  125 (287)
T 3rku_A          112 EFKDIDILVNNAGK  125 (287)
T ss_dssp             GGCSCCEEEECCCC
T ss_pred             hcCCCCEEEECCCc
Confidence            12479999999983

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=96.73  E-value=0.0038  Score=49.03  Aligned_cols=35  Identities=17%  Similarity=0.065  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEe-Cc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASC-GA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~-~~  100 (240)
                      .++++||+||+|++|.++++.+...|++|+.++ ++
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~   43 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRS   43 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCC
Confidence            678999999999999999999999999999998 75

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.72  E-value=0.00089  Score=50.37  Aligned_cols=72  Identities=24%  Similarity=0.143  Sum_probs=46.0

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      .+|||+||+|.+|..+++.+...|.+|+++++. ++.+.+.  ....++..+-.+...+...- .++|+||.++|.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~-~~~d~vi~~a~~   77 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIEN--EHLKVKKADVSSLDEVCEVC-KGADAVISAFNP   77 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCC--TTEEEECCCTTCHHHHHHHH-TTCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhcc--CceEEEEecCCCHHHHHHHh-cCCCEEEEeCcC
Confidence            689999999999999999999999999999975 3322110  11122222111211111111 258999999985

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=96.72  E-value=0.0017  Score=50.52  Aligned_cols=76  Identities=18%  Similarity=0.203  Sum_probs=48.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCC-EEE--eCCCCc-c-ccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGAD-EVL--DYKTPD-G-AALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~-~v~--~~~~~~-~-~~~~~--~~~~~~  133 (240)
                      .++++||+||+|++|..++..+...|++|+.+.++ ++.+.+    ++.+.. ..+  |..+.+ . ..++.  ..-.++
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i  112 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDFGTI  112 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            67899999999999999998888889999999864 444333    233433 222  222211 1 11111  011369


Q ss_pred             cEEEeCCC
Q 045248          134 DAVIHCAT  141 (240)
Q Consensus       134 d~v~d~~g  141 (240)
                      |++|.++|
T Consensus       113 d~li~~Ag  120 (279)
T 3ctm_A          113 DVFVANAG  120 (279)
T ss_dssp             SEEEECGG
T ss_pred             CEEEECCc
Confidence            99999987

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=96.71  E-value=0.0077  Score=47.51  Aligned_cols=92  Identities=16%  Similarity=0.082  Sum_probs=61.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccH-HHHHhcCCC--EEEeCCCCccccccCCCCCcccEEEeCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNI-EFVKSLGAD--EVLDYKTPDGAALKSPSGRKYDAVIHCA  140 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~-~~~~~~g~~--~v~~~~~~~~~~~~~~~~~~~d~v~d~~  140 (240)
                      .+++++|+| +|++|.+++..+...|+ +|++..++ ++. +.+++++..  .+++..    ...+.  -.++|+|++++
T Consensus       140 ~~~~vlVlG-aGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~----~~~~~--~~~aDivIn~t  212 (297)
T 2egg_A          140 DGKRILVIG-AGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLA----EAETR--LAEYDIIINTT  212 (297)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHH----HHHHT--GGGCSEEEECS
T ss_pred             CCCEEEEEC-cHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHH----HHHhh--hccCCEEEECC
Confidence            678999999 79999999999999998 88888875 554 444566642  222211    01111  14689999999


Q ss_pred             CCCCc------cccccCCCCCcEEEEeCCC
Q 045248          141 TGIPW------STFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       141 g~~~~------~~~~~~l~~~G~iv~~g~~  164 (240)
                      +....      ......++++..++.+...
T Consensus       213 ~~~~~~~~~~~~i~~~~l~~~~~v~D~~y~  242 (297)
T 2egg_A          213 SVGMHPRVEVQPLSLERLRPGVIVSDIIYN  242 (297)
T ss_dssp             CTTCSSCCSCCSSCCTTCCTTCEEEECCCS
T ss_pred             CCCCCCCCCCCCCCHHHcCCCCEEEEcCCC
Confidence            85331      1123467777778877753

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=96.70  E-value=0.0042  Score=48.21  Aligned_cols=98  Identities=16%  Similarity=0.223  Sum_probs=61.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-c-ccHH----HHHhcCCCEE-E--eCCCCc--cccccCC--CCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-A-RNIE----FVKSLGADEV-L--DYKTPD--GAALKSP--SGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~-~~~~----~~~~~g~~~v-~--~~~~~~--~~~~~~~--~~~~  132 (240)
                      .++++||+||++++|.++++.+...|++|+.+.+ + ++.+    .+++.|.... +  |-.+..  ...++..  .-.+
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   96 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFGH   96 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            6789999999999999999999999999998774 3 3322    2344554322 2  222211  1111110  1136


Q ss_pred             ccEEEeCCCCCC---c-----------------------cccccCCCCCcEEEEeCC
Q 045248          133 YDAVIHCATGIP---W-----------------------STFEPNLGTNGKVIDITP  163 (240)
Q Consensus       133 ~d~v~d~~g~~~---~-----------------------~~~~~~l~~~G~iv~~g~  163 (240)
                      +|+++.++|...   +                       +.++..++++|+++.++.
T Consensus        97 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS  153 (270)
T 3is3_A           97 LDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS  153 (270)
T ss_dssp             CCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence            999999998421   1                       123335667899998874

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.70  E-value=0.0024  Score=51.09  Aligned_cols=77  Identities=21%  Similarity=0.175  Sum_probs=48.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-cc-HHHHHh----cCC-CEEEeCCCCccccc-cCCCCCcccEEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RN-IEFVKS----LGA-DEVLDYKTPDGAAL-KSPSGRKYDAVI  137 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~-~~~~~~----~g~-~~v~~~~~~~~~~~-~~~~~~~~d~v~  137 (240)
                      .+.+|||+||+|.+|..+++.+...|++|+++++. ++ .+..++    .+. ...+..+-.+...+ +.....++|+|+
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   83 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAI   83 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEE
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEE
Confidence            46799999999999999999999999999999863 22 222221    122 22332221121111 111124799999


Q ss_pred             eCCCC
Q 045248          138 HCATG  142 (240)
Q Consensus       138 d~~g~  142 (240)
                      .++|.
T Consensus        84 h~A~~   88 (341)
T 3enk_A           84 HFAAL   88 (341)
T ss_dssp             ECCCC
T ss_pred             ECccc
Confidence            99985

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=96.70  E-value=0.0046  Score=51.88  Aligned_cols=90  Identities=18%  Similarity=0.047  Sum_probs=65.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      -.|++|.|+| .|.+|..+++.++.+|++|+++.++ .+...+.+.|.. +.   +. ...+     ...|+|+-+.+..
T Consensus       255 l~GktVgIIG-~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~-~~---~l-~ell-----~~aDiVi~~~~t~  323 (479)
T 1v8b_A          255 ISGKIVVICG-YGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFN-VV---TL-DEIV-----DKGDFFITCTGNV  323 (479)
T ss_dssp             CTTSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCE-EC---CH-HHHT-----TTCSEEEECCSSS
T ss_pred             cCCCEEEEEe-eCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCE-ec---CH-HHHH-----hcCCEEEECCChh
Confidence            3889999999 9999999999999999999999975 443345556652 21   10 1111     3589999987654


Q ss_pred             C-c-cccccCCCCCcEEEEeCCCc
Q 045248          144 P-W-STFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus       144 ~-~-~~~~~~l~~~G~iv~~g~~~  165 (240)
                      . + ...++.+++++.++.++...
T Consensus       324 ~lI~~~~l~~MK~gailiNvgrg~  347 (479)
T 1v8b_A          324 DVIKLEHLLKMKNNAVVGNIGHFD  347 (479)
T ss_dssp             SSBCHHHHTTCCTTCEEEECSSTT
T ss_pred             hhcCHHHHhhcCCCcEEEEeCCCC
Confidence            4 3 25678899999999998543

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=96.69  E-value=0.0051  Score=49.89  Aligned_cols=46  Identities=15%  Similarity=0.136  Sum_probs=37.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHH-HHHhcCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIE-FVKSLGAD  112 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~-~~~~~g~~  112 (240)
                      .|++|+|+| .|.+|..+++.+...|++|++.+++ ++.+ +++++|++
T Consensus       172 ~GktV~V~G-~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~  219 (364)
T 1leh_A          172 EGLAVSVQG-LGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGAD  219 (364)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCE
T ss_pred             CcCEEEEEC-chHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCE
Confidence            789999999 8999999999999999999977754 4444 55666753

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=96.69  E-value=0.002  Score=49.10  Aligned_cols=76  Identities=16%  Similarity=0.141  Sum_probs=47.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCC-------EEEEEeCc-ccHHHH-Hh---cCCC-EEE--eCCCCc--cccccC--
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNT-------HVTASCGA-RNIEFV-KS---LGAD-EVL--DYKTPD--GAALKS--  127 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~-------~v~~~~~~-~~~~~~-~~---~g~~-~v~--~~~~~~--~~~~~~--  127 (240)
                      ++++||+||+|++|..+++.+...|+       +|+.+.++ ++.+.+ ++   .+.. ..+  |..+..  ...++.  
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   81 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV   81 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHHH
Confidence            56899999999999999988888898       89998875 444333 22   2432 222  222211  111111  


Q ss_pred             CCCCcccEEEeCCCC
Q 045248          128 PSGRKYDAVIHCATG  142 (240)
Q Consensus       128 ~~~~~~d~v~d~~g~  142 (240)
                      ....++|++|.++|.
T Consensus        82 ~~~g~id~li~~Ag~   96 (244)
T 2bd0_A           82 ERYGHIDCLVNNAGV   96 (244)
T ss_dssp             HHTSCCSEEEECCCC
T ss_pred             HhCCCCCEEEEcCCc
Confidence            012469999999984

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=96.69  E-value=0.0012  Score=51.15  Aligned_cols=35  Identities=34%  Similarity=0.387  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .++++||+||+|++|.++++.+...|++|+.++++
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   61 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRS   61 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            67899999999999999999999999999999965

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.67  E-value=0.0031  Score=52.16  Aligned_cols=94  Identities=12%  Similarity=0.121  Sum_probs=67.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP  144 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~  144 (240)
                      .+.+|+|+| .|.+|..+++.++..|.+|++++.+ ++.+.+++.|... +.-+..+...++..+-..+|+++-+++...
T Consensus         3 ~~~~viIiG-~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~v-i~GDat~~~~L~~agi~~A~~viv~~~~~~   80 (413)
T 3l9w_A            3 HGMRVIIAG-FGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKV-FYGDATRMDLLESAGAAKAEVLINAIDDPQ   80 (413)
T ss_dssp             -CCSEEEEC-CSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCC-EESCTTCHHHHHHTTTTTCSEEEECCSSHH
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeE-EEcCCCCHHHHHhcCCCccCEEEECCCChH
Confidence            456799999 8999999999999999999999975 7888888888754 333333333444445567999999998643


Q ss_pred             ----ccccccCCCCCcEEEEe
Q 045248          145 ----WSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       145 ----~~~~~~~l~~~G~iv~~  161 (240)
                          +-...+.+.+.-+++.-
T Consensus        81 ~n~~i~~~ar~~~p~~~Iiar  101 (413)
T 3l9w_A           81 TNLQLTEMVKEHFPHLQIIAR  101 (413)
T ss_dssp             HHHHHHHHHHHHCTTCEEEEE
T ss_pred             HHHHHHHHHHHhCCCCeEEEE
Confidence                23344556677666644

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=96.67  E-value=0.014  Score=45.34  Aligned_cols=90  Identities=16%  Similarity=0.221  Sum_probs=58.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHH-HHHhcCC--CEEEeCCCCccccccCCCCCcccEEEeCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNIE-FVKSLGA--DEVLDYKTPDGAALKSPSGRKYDAVIHCA  140 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~-~~~~~g~--~~v~~~~~~~~~~~~~~~~~~~d~v~d~~  140 (240)
                      .+++++|+| +|++|.+++..+...|+ +|++..++ ++.+ .+++++.  ..++.+.     .+.   ...+|+||+++
T Consensus       119 ~~k~~lvlG-aGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~-----~l~---~~~~DivInaT  189 (272)
T 3pwz_A          119 RNRRVLLLG-AGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYE-----ALE---GQSFDIVVNAT  189 (272)
T ss_dssp             TTSEEEEEC-CSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSG-----GGT---TCCCSEEEECS
T ss_pred             cCCEEEEEC-ccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHH-----Hhc---ccCCCEEEECC
Confidence            689999999 79999999999999997 88888875 5544 4455553  1222221     111   15799999998


Q ss_pred             CCCC----ccccccCCCCCcEEEEeCCC
Q 045248          141 TGIP----WSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       141 g~~~----~~~~~~~l~~~G~iv~~g~~  164 (240)
                      +...    .....+.++++..++.+...
T Consensus       190 p~gm~~~~~~i~~~~l~~~~~V~DlvY~  217 (272)
T 3pwz_A          190 SASLTADLPPLPADVLGEAALAYELAYG  217 (272)
T ss_dssp             SGGGGTCCCCCCGGGGTTCSEEEESSCS
T ss_pred             CCCCCCCCCCCCHHHhCcCCEEEEeecC
Confidence            6321    01123457777777766543

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=96.67  E-value=0.0017  Score=50.32  Aligned_cols=77  Identities=19%  Similarity=0.253  Sum_probs=49.6

Q ss_pred             CCCeEEEEcC--CchHHHHHHHHHHhCCCEEEEEeCc-cc-HHHH-HhcCCC-EEE--eCCCCc--ccccc---CCCC--
Q 045248           66 QQKNILVTAA--SGGVGHYAVQLAKLGNTHVTASCGA-RN-IEFV-KSLGAD-EVL--DYKTPD--GAALK---SPSG--  130 (240)
Q Consensus        66 ~g~~vlV~G~--~g~vG~~~~~~a~~~g~~v~~~~~~-~~-~~~~-~~~g~~-~v~--~~~~~~--~~~~~---~~~~--  130 (240)
                      .++++||+|+  +|++|.++++.+...|++|+.++++ ++ .+.+ ++++.. ..+  |..+.+  ...++   ...+  
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~~   85 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGAG   85 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHCTT
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            5789999998  8999999999999999999999875 33 2333 344422 222  222222  11111   1111  


Q ss_pred             CcccEEEeCCCC
Q 045248          131 RKYDAVIHCATG  142 (240)
Q Consensus       131 ~~~d~v~d~~g~  142 (240)
                      .++|+++.++|.
T Consensus        86 ~~iD~lv~nAg~   97 (269)
T 2h7i_A           86 NKLDGVVHSIGF   97 (269)
T ss_dssp             CCEEEEEECCCC
T ss_pred             CCceEEEECCcc
Confidence            279999999984

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=96.66  E-value=0.0026  Score=49.47  Aligned_cols=75  Identities=16%  Similarity=0.147  Sum_probs=48.6

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCC---CEEE--eCCCCc--cccccCC--CCCcccEE
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGA---DEVL--DYKTPD--GAALKSP--SGRKYDAV  136 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~---~~v~--~~~~~~--~~~~~~~--~~~~~d~v  136 (240)
                      +++||+||+|++|.++++.+...|++|+.++++ ++.+.+ +++..   ...+  |..+.+  ...++..  .-.++|++
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l  101 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGL  101 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGSSCCEE
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            789999999999999999999999999999875 444433 33321   1222  222221  1111111  12468999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      +.++|.
T Consensus       102 vnnAG~  107 (272)
T 2nwq_A          102 INNAGL  107 (272)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999984

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=96.66  E-value=0.0017  Score=49.93  Aligned_cols=97  Identities=8%  Similarity=0.055  Sum_probs=65.0

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCC----EEEeCCCCccccccCCC
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGAD----EVLDYKTPDGAALKSPS  129 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~----~v~~~~~~~~~~~~~~~  129 (240)
                      ...++     +++.+||-+| +| .|..+..+++..+++|++++.+ +..+.+++....    .++..+.   ... ...
T Consensus        49 ~~~~~-----~~~~~vLdiG-~G-~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~---~~~-~~~  117 (266)
T 3ujc_A           49 SDIEL-----NENSKVLDIG-SG-LGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDI---LTK-EFP  117 (266)
T ss_dssp             TTCCC-----CTTCEEEEET-CT-TSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCT---TTC-CCC
T ss_pred             HhcCC-----CCCCEEEEEC-CC-CCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECcc---ccC-CCC
Confidence            45555     7889999999 55 7888888888778899999954 677777765432    1111111   111 122


Q ss_pred             CCcccEEEeCCCCC---------CccccccCCCCCcEEEEeC
Q 045248          130 GRKYDAVIHCATGI---------PWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       130 ~~~~d~v~d~~g~~---------~~~~~~~~l~~~G~iv~~g  162 (240)
                      ...||+|+..-.-.         .+..+.+.|+|+|+++...
T Consensus       118 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  159 (266)
T 3ujc_A          118 ENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITD  159 (266)
T ss_dssp             TTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            46799998754311         1566778899999988765

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=96.66  E-value=0.0014  Score=52.46  Aligned_cols=77  Identities=19%  Similarity=0.197  Sum_probs=47.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-c-cHHHHHhcCCCEEEeCCCCccccc-cCCCCCcccEEEeCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-R-NIEFVKSLGADEVLDYKTPDGAAL-KSPSGRKYDAVIHCATG  142 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~-~~~~~~~~g~~~v~~~~~~~~~~~-~~~~~~~~d~v~d~~g~  142 (240)
                      .+.+|||+||+|.+|..+++.+...|++|+++++. . ..+.++++....++..+-.+...+ +...+..+|+||.++|.
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~~   99 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTAAS   99 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEECcee
Confidence            56789999999999999999888899999999864 2 222222221112222221111111 11111359999999984

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=96.66  E-value=0.004  Score=47.57  Aligned_cols=77  Identities=23%  Similarity=0.266  Sum_probs=49.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-c-ccHHH----HHhcCCCEE-Ee--CCCCc--cccccC--CCCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-A-RNIEF----VKSLGADEV-LD--YKTPD--GAALKS--PSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~-~~~~~----~~~~g~~~v-~~--~~~~~--~~~~~~--~~~~~  132 (240)
                      .++++||+||+|++|.++++.+...|++|+.+.+ + ++.+.    +++.|.... +.  -.+.+  ...++.  ....+
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   82 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGS   82 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            5689999999999999999999999999988875 3 33332    234454322 22  22211  111111  01136


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.++|.
T Consensus        83 id~lv~nAg~   92 (246)
T 3osu_A           83 LDVLVNNAGI   92 (246)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999983

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=96.65  E-value=0.0013  Score=51.04  Aligned_cols=71  Identities=17%  Similarity=0.152  Sum_probs=45.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      +++|||+||+|++|..+++.+...|++|+++++. .+.+   ..+. ..+..+-.+...++... .++|++|.+.|.
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~---~~~~-~~~~~Dl~d~~~~~~~~-~~~D~vi~~Ag~   74 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA---GPNE-ECVQCDLADANAVNAMV-AGCDGIVHLGGI   74 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC---CTTE-EEEECCTTCHHHHHHHH-TTCSEEEECCSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc---CCCC-EEEEcCCCCHHHHHHHH-cCCCEEEECCCC
Confidence            4689999999999999999999999999999964 3322   1111 22222212211111111 269999999984

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=96.64  E-value=0.0035  Score=50.21  Aligned_cols=35  Identities=17%  Similarity=0.065  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEe-Cc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASC-GA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~-~~  100 (240)
                      .++++||+||+|++|.++++.+...|++|+.++ ++
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~   80 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRS   80 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            578999999999999999999999999999998 65

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=96.64  E-value=0.0027  Score=49.03  Aligned_cols=76  Identities=18%  Similarity=0.218  Sum_probs=48.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc--ccHHHHHh----cCCC-EEE--eCCCCc--cccccCC--CCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA--RNIEFVKS----LGAD-EVL--DYKTPD--GAALKSP--SGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~--~~~~~~~~----~g~~-~v~--~~~~~~--~~~~~~~--~~~~  132 (240)
                      .+++++|+||+|++|..+++.+...|++|+.+.+.  +..+.+++    .+.. ..+  |..+.+  ...++..  ...+
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   85 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHFGK   85 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            56899999999999999999999999999988753  33333332    2222 222  222221  1111111  1137


Q ss_pred             ccEEEeCCC
Q 045248          133 YDAVIHCAT  141 (240)
Q Consensus       133 ~d~v~d~~g  141 (240)
                      +|++|.++|
T Consensus        86 id~lv~~Ag   94 (264)
T 3i4f_A           86 IDFLINNAG   94 (264)
T ss_dssp             CCEEECCCC
T ss_pred             CCEEEECCc
Confidence            999999999

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=96.64  E-value=0.0062  Score=48.99  Aligned_cols=35  Identities=20%  Similarity=0.128  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .+.+|||+||+|.+|..+++.+...|.+|+++++.
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~   60 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNF   60 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            45789999999999999999988889999999863

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=96.64  E-value=0.0039  Score=47.37  Aligned_cols=76  Identities=17%  Similarity=0.161  Sum_probs=47.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEE-eCc-ccHHHH----HhcCCC-EE-E--eCCCCc-c-ccccCC--CCCc
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTAS-CGA-RNIEFV----KSLGAD-EV-L--DYKTPD-G-AALKSP--SGRK  132 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~-~~~-~~~~~~----~~~g~~-~v-~--~~~~~~-~-~~~~~~--~~~~  132 (240)
                      +++++|+||+|++|..+++.+...|++|+++ .++ ++.+.+    ++.+.. .. +  |..+.+ . ..++..  .-.+
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLGG   80 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcCC
Confidence            3689999999999999999999999999988 554 333322    333432 22 2  222211 1 111110  1146


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|++|.++|.
T Consensus        81 ~d~li~~Ag~   90 (245)
T 2ph3_A           81 LDTLVNNAGI   90 (245)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999983

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=96.63  E-value=0.0033  Score=54.80  Aligned_cols=77  Identities=18%  Similarity=0.232  Sum_probs=47.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC---------c-ccH----HHHHhcCCCEEEeCCCCc--cccccCC-
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG---------A-RNI----EFVKSLGADEVLDYKTPD--GAALKSP-  128 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~---------~-~~~----~~~~~~g~~~v~~~~~~~--~~~~~~~-  128 (240)
                      .|+++||+||++++|.++++.+...|++|+++++         + ++.    +.+++.+...+.|..+..  ...++.. 
T Consensus        18 ~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d~~~~~~~~~~~~   97 (613)
T 3oml_A           18 DGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNSVIDGAKVIETAI   97 (613)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTTCCEEECCCCGGGHHHHHC---
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHH
Confidence            6889999999999999999999999999998864         2 222    223445655555554433  1122211 


Q ss_pred             -CCCcccEEEeCCCC
Q 045248          129 -SGRKYDAVIHCATG  142 (240)
Q Consensus       129 -~~~~~d~v~d~~g~  142 (240)
                       .-.++|++|+++|.
T Consensus        98 ~~~g~iDiLVnnAGi  112 (613)
T 3oml_A           98 KAFGRVDILVNNAGI  112 (613)
T ss_dssp             -------CEECCCCC
T ss_pred             HHCCCCcEEEECCCC
Confidence             12469999999983

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=96.63  E-value=0.00089  Score=50.75  Aligned_cols=96  Identities=15%  Similarity=0.176  Sum_probs=61.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhC-CCEEEEEeCc-ccHHHHH----hcCCCEEEeCCCCcccc-ccCC-CCCcccEE
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLG-NTHVTASCGA-RNIEFVK----SLGADEVLDYKTPDGAA-LKSP-SGRKYDAV  136 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~-g~~v~~~~~~-~~~~~~~----~~g~~~v~~~~~~~~~~-~~~~-~~~~~d~v  136 (240)
                      .++.+||-+| +| .|..+..+++.. +.+|++++.+ +..+.++    ..|...-+.....+... .... ....||+|
T Consensus        53 ~~~~~vLdiG-~G-~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I  130 (233)
T 2gpy_A           53 AAPARILEIG-TA-IGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVL  130 (233)
T ss_dssp             HCCSEEEEEC-CT-TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEE
T ss_pred             cCCCEEEEec-CC-CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEE
Confidence            5788999999 55 788888899887 5699999964 5555554    34542111111122111 1111 13579999


Q ss_pred             EeCCCCC----CccccccCCCCCcEEEEeC
Q 045248          137 IHCATGI----PWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       137 ~d~~g~~----~~~~~~~~l~~~G~iv~~g  162 (240)
                      +-.....    .+..+.+.|+++|.++...
T Consensus       131 ~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  160 (233)
T 2gpy_A          131 FIDAAKGQYRRFFDMYSPMVRPGGLILSDN  160 (233)
T ss_dssp             EEEGGGSCHHHHHHHHGGGEEEEEEEEEET
T ss_pred             EECCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence            8765532    2677888999999998764

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=96.63  E-value=0.0029  Score=50.59  Aligned_cols=77  Identities=19%  Similarity=0.170  Sum_probs=47.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-cc--HHHHHhcCC--C-EEEeCCCCcccccc-CCCCCcccEEEe
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RN--IEFVKSLGA--D-EVLDYKTPDGAALK-SPSGRKYDAVIH  138 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~--~~~~~~~g~--~-~v~~~~~~~~~~~~-~~~~~~~d~v~d  138 (240)
                      .+++|||+||+|.+|..+++.+...|++|+++++. ++  .+.+++++.  . ..+..+-.+...+. ...+.++|+||.
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih   81 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYN   81 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEEE
Confidence            35789999999999999999888899999999964 32  234444431  1 12211111111111 111125799999


Q ss_pred             CCCC
Q 045248          139 CATG  142 (240)
Q Consensus       139 ~~g~  142 (240)
                      ++|.
T Consensus        82 ~A~~   85 (345)
T 2z1m_A           82 LAAQ   85 (345)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9984

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=96.63  E-value=0.0025  Score=48.44  Aligned_cols=76  Identities=21%  Similarity=0.225  Sum_probs=47.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEE-eCc-ccHHHH----HhcCCC-EEE--eCCCCc--cccccC--CCCCcc
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTAS-CGA-RNIEFV----KSLGAD-EVL--DYKTPD--GAALKS--PSGRKY  133 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~-~~~-~~~~~~----~~~g~~-~v~--~~~~~~--~~~~~~--~~~~~~  133 (240)
                      ++++||+||+|++|..+++.+...|++|+++ .++ ++.+.+    ++.+.. ..+  |..+..  ...++.  ..-.++
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   80 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTI   80 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            4689999999999999999999999999885 554 333322    233432 122  222211  111111  012369


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |++|.++|.
T Consensus        81 d~li~~Ag~   89 (244)
T 1edo_A           81 DVVVNNAGI   89 (244)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=96.62  E-value=0.004  Score=49.68  Aligned_cols=77  Identities=19%  Similarity=0.239  Sum_probs=50.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC---------c-ccHH----HHHhcCCCEEEeCCCCcc--ccccC--
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG---------A-RNIE----FVKSLGADEVLDYKTPDG--AALKS--  127 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~---------~-~~~~----~~~~~g~~~v~~~~~~~~--~~~~~--  127 (240)
                      .++++||+||+|++|..+++.+...|++|+++++         + ++.+    .++..+...+.|..+...  ..++.  
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~~~~~~~~~~~~~   87 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTAL   87 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence            6789999999999999999999999999998642         2 2222    223445444445444331  11111  


Q ss_pred             CCCCcccEEEeCCCC
Q 045248          128 PSGRKYDAVIHCATG  142 (240)
Q Consensus       128 ~~~~~~d~v~d~~g~  142 (240)
                      ....++|++|.+.|.
T Consensus        88 ~~~g~iD~lVnnAG~  102 (319)
T 1gz6_A           88 DTFGRIDVVVNNAGI  102 (319)
T ss_dssp             HHTSCCCEEEECCCC
T ss_pred             HHcCCCCEEEECCCC
Confidence            112469999999983

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=96.62  E-value=0.029  Score=44.47  Aligned_cols=117  Identities=17%  Similarity=0.065  Sum_probs=71.1

Q ss_pred             hhhchHHHHHHHHHHhh--------hCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-c-cHHHHHhc
Q 045248           40 SGLPVAGLTAHQALTQS--------AGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-R-NIEFVKSL  109 (240)
Q Consensus        40 a~~~~~~~ta~~~l~~~--------~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~-~~~~~~~~  109 (240)
                      ..+||+...+...+...        .+..    -.|.+++|+|++.-+|..+.+++...|++|+++.++ . ..+....+
T Consensus       146 ~~~PcTp~a~v~ll~~~~~~~~~~~~g~~----l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~l  221 (320)
T 1edz_A          146 SILPCTPLAIVKILEFLKIYNNLLPEGNR----LYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESL  221 (320)
T ss_dssp             CCCCHHHHHHHHHHHHTTCSCTTSCTTCT----TTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCS
T ss_pred             CcCCCcHHHHHHHHHhhcccccccccCCC----CCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHH
Confidence            45677777777667442        2322    378999999943357999999999999998877653 1 12222223


Q ss_pred             CCC-EEEe----CCCCc-cccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCc
Q 045248          110 GAD-EVLD----YKTPD-GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus       110 g~~-~v~~----~~~~~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~  165 (240)
                      +.. +...    .+..+ ...+     ...|+||-++|.+.+--.-+.++++..++.++...
T Consensus       222 a~~~~~~t~~~~t~~~~L~e~l-----~~ADIVIsAtg~p~~vI~~e~vk~GavVIDVgi~r  278 (320)
T 1edz_A          222 KLNKHHVEDLGEYSEDLLKKCS-----LDSDVVITGVPSENYKFPTEYIKEGAVCINFACTK  278 (320)
T ss_dssp             SCCCCEEEEEEECCHHHHHHHH-----HHCSEEEECCCCTTCCBCTTTSCTTEEEEECSSSC
T ss_pred             hhhcccccccccccHhHHHHHh-----ccCCEEEECCCCCcceeCHHHcCCCeEEEEcCCCc
Confidence            321 1000    00011 1111     35899999999865323335578888888888653

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=96.62  E-value=0.019  Score=45.58  Aligned_cols=90  Identities=13%  Similarity=0.012  Sum_probs=64.1

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCC--EEEEEeCc-ccHHHHHhcCCCEEEeCCCCccc-cccCCCCCcccEEEeCCCC
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNT--HVTASCGA-RNIEFVKSLGADEVLDYKTPDGA-ALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~-~~~~~~~~~~d~v~d~~g~  142 (240)
                      ..+|.|+| .|.+|....+.++..|.  +|++.+++ ++.+.+++.|.......+.  .. ..     ...|+||-|+..
T Consensus        33 ~~kI~IIG-~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~--~~~~~-----~~aDvVilavp~  104 (314)
T 3ggo_A           33 MQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSI--AKVED-----FSPDFVMLSSPV  104 (314)
T ss_dssp             CSEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCT--TGGGG-----GCCSEEEECSCG
T ss_pred             CCEEEEEe-eCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCH--HHHhh-----ccCCEEEEeCCH
Confidence            36899999 99999999999999998  89998875 6788888888632111111  11 11     358999999986


Q ss_pred             CC----ccccccCCCCCcEEEEeCCC
Q 045248          143 IP----WSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       143 ~~----~~~~~~~l~~~G~iv~~g~~  164 (240)
                      ..    +......++++..++.++..
T Consensus       105 ~~~~~vl~~l~~~l~~~~iv~d~~Sv  130 (314)
T 3ggo_A          105 RTFREIAKKLSYILSEDATVTDQGSV  130 (314)
T ss_dssp             GGHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred             HHHHHHHHHHhhccCCCcEEEECCCC
Confidence            44    33444557788788777754

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=96.62  E-value=0.0039  Score=47.33  Aligned_cols=76  Identities=21%  Similarity=0.231  Sum_probs=49.1

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCC-EEE--eCCCCc--cccccC--CCCCcccEEE
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGAD-EVL--DYKTPD--GAALKS--PSGRKYDAVI  137 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~-~v~--~~~~~~--~~~~~~--~~~~~~d~v~  137 (240)
                      ++++||+||+|++|.++++.+...|++|+.++++ ++.+.+ ++++.. ..+  |..+..  ...++.  ...+++|+++
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv   82 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWGGLPELVL   82 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHHHHCSCSEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCCCcEEE
Confidence            5789999999999999999999999999999975 444433 333322 122  222221  111111  1124699999


Q ss_pred             eCCCC
Q 045248          138 HCATG  142 (240)
Q Consensus       138 d~~g~  142 (240)
                      .++|.
T Consensus        83 nnAg~   87 (235)
T 3l6e_A           83 HCAGT   87 (235)
T ss_dssp             EECCC
T ss_pred             ECCCC
Confidence            99984

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=96.61  E-value=0.002  Score=49.53  Aligned_cols=71  Identities=17%  Similarity=0.132  Sum_probs=46.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEE--eCCCCc-c-ccccC--CCCCcccEEEe
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVL--DYKTPD-G-AALKS--PSGRKYDAVIH  138 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~--~~~~~~-~-~~~~~--~~~~~~d~v~d  138 (240)
                      .++++||+||+|++|.++++.+...|++|+.+.++ ++.+.      ...+  |..+.+ . ..++.  ....++|+++.
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~------~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lv~   93 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPEG------FLAVKCDITDTEQVEQAYKEIEETHGPVEVLIA   93 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTT------SEEEECCTTSHHHHHHHHHHHHHHTCSCSEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhcc------ceEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            57899999999999999999999999999999864 33221      1223  222221 1 11111  11246899999


Q ss_pred             CCCC
Q 045248          139 CATG  142 (240)
Q Consensus       139 ~~g~  142 (240)
                      ++|.
T Consensus        94 nAg~   97 (253)
T 2nm0_A           94 NAGV   97 (253)
T ss_dssp             ECSC
T ss_pred             CCCC
Confidence            9873

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=96.61  E-value=0.0034  Score=48.29  Aligned_cols=77  Identities=17%  Similarity=0.231  Sum_probs=48.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccH-HHHH----hcCCC-EEE--eCCCCc-c-ccccC--CCCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNI-EFVK----SLGAD-EVL--DYKTPD-G-AALKS--PSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~-~~~~----~~g~~-~v~--~~~~~~-~-~~~~~--~~~~~  132 (240)
                      .++++||+||+|++|..+++.+...|++|++++++ ++. +.++    +.+.. ..+  |..+.+ . ..++.  ..-.+
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   92 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGP   92 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            56899999999999999999999999999999973 332 2222    22433 222  222221 1 11111  11246


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.++|.
T Consensus        93 id~li~~Ag~  102 (265)
T 1h5q_A           93 ISGLIANAGV  102 (265)
T ss_dssp             EEEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999984

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=96.60  E-value=0.0052  Score=47.94  Aligned_cols=77  Identities=13%  Similarity=0.106  Sum_probs=49.6

Q ss_pred             CCCeEEEEcCC--chHHHHHHHHHHhCCCEEEEEeCcc---cHHHHH-hcCCCEEEeCCCCccc----cccC--CCCCcc
Q 045248           66 QQKNILVTAAS--GGVGHYAVQLAKLGNTHVTASCGAR---NIEFVK-SLGADEVLDYKTPDGA----ALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~--g~vG~~~~~~a~~~g~~v~~~~~~~---~~~~~~-~~g~~~v~~~~~~~~~----~~~~--~~~~~~  133 (240)
                      .++++||+||+  +|+|.++++.+...|++|+.+.+..   ..+.+. +.+....+..+-.+..    .++.  ..-.++
T Consensus        25 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i  104 (280)
T 3nrc_A           25 AGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVWDGL  104 (280)
T ss_dssp             TTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHCSSC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHcCCC
Confidence            67899999988  6699999999999999999998653   333333 3343333322222211    1111  112469


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.++|.
T Consensus       105 d~li~nAg~  113 (280)
T 3nrc_A          105 DAIVHSIAF  113 (280)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCcc
Confidence            999999984

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=96.59  E-value=0.0031  Score=50.40  Aligned_cols=73  Identities=22%  Similarity=0.194  Sum_probs=45.2

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      .+|||+||+|.+|..+++.+...|++|++++++ .+.+.+.+.+.. ++..+-.+...+...- .++|+||.++|.
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~-~~~~Dl~d~~~~~~~~-~~~d~vih~a~~   87 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPE-CRVAEMLDHAGLERAL-RGLDGVIFSAGY   87 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCE-EEECCTTCHHHHHHHT-TTCSEEEEC---
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeE-EEEecCCCHHHHHHHH-cCCCEEEECCcc
Confidence            479999999999999999998899999999964 443333333332 2322211211111111 369999999983

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=96.59  E-value=0.005  Score=49.41  Aligned_cols=102  Identities=16%  Similarity=0.144  Sum_probs=62.3

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC--CEEEEEeC-cccHHHHHh----cC------------C-CEE
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN--THVTASCG-ARNIEFVKS----LG------------A-DEV  114 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g--~~v~~~~~-~~~~~~~~~----~g------------~-~~v  114 (240)
                      ....+     .++++||-.| +|. |..++.+++..|  .+|++++. ++..+.+++    +|            . ..+
T Consensus        99 ~~l~~-----~~g~~VLDiG-~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~  171 (336)
T 2b25_A           99 SMMDI-----NPGDTVLEAG-SGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDF  171 (336)
T ss_dssp             HHHTC-----CTTCEEEEEC-CTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEE
T ss_pred             HhcCC-----CCCCEEEEeC-CCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEE
Confidence            45566     7999999999 665 777888888765  59999995 455555543    11            1 111


Q ss_pred             EeCCCCccccccCCCCCcccEEEeCCCCC--CccccccCCCCCcEEEEeCCCc
Q 045248          115 LDYKTPDGAALKSPSGRKYDAVIHCATGI--PWSTFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~d~v~d~~g~~--~~~~~~~~l~~~G~iv~~g~~~  165 (240)
                      +..+-.  ..........||+|+-....+  .+..+.+.|+++|+++......
T Consensus       172 ~~~d~~--~~~~~~~~~~fD~V~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  222 (336)
T 2b25_A          172 IHKDIS--GATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVNI  222 (336)
T ss_dssp             EESCTT--CCC-------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred             EECChH--HcccccCCCCeeEEEECCCCHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            111111  111111234699998665543  3778899999999998776543

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=96.59  E-value=0.0043  Score=47.62  Aligned_cols=39  Identities=26%  Similarity=0.237  Sum_probs=34.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHH
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIE  104 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~  104 (240)
                      .++++||+||+|++|.++++.+...|++|+.+.++ ++.+
T Consensus        11 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~   50 (252)
T 3f1l_A           11 NDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLR   50 (252)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            67899999999999999999999999999999875 4433

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.59  E-value=0.0073  Score=47.66  Aligned_cols=69  Identities=22%  Similarity=0.183  Sum_probs=44.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      .+|||+||+|.+|..+++.+...|.+|+++++. .+.+ ++  +.. ++..+-. ...+...- .++|+||.+++.
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~--~~~-~~~~Dl~-~~~~~~~~-~~~d~Vih~a~~   72 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-IN--DYE-YRVSDYT-LEDLINQL-NDVDAVVHLAAT   72 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC--------CCE-EEECCCC-HHHHHHHT-TTCSEEEECCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-CC--ceE-EEEcccc-HHHHHHhh-cCCCEEEEcccc
Confidence            689999999999999999999999999999975 3333 33  332 2221111 11111111 279999999984

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=96.59  E-value=0.0067  Score=50.05  Aligned_cols=78  Identities=18%  Similarity=0.149  Sum_probs=50.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHh-CCCEEEEEeCc-c---c-------------HHHHHhcCCCEE-EeCCCCcc---
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKL-GNTHVTASCGA-R---N-------------IEFVKSLGADEV-LDYKTPDG---  122 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~-~g~~v~~~~~~-~---~-------------~~~~~~~g~~~v-~~~~~~~~---  122 (240)
                      +.++++||+||++|+|+++.+.+.. .|++|+.+.++ +   +             .+.+++.|.... +..+-.+.   
T Consensus        59 ~~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd~~~v  138 (422)
T 3s8m_A           59 DGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDAAR  138 (422)
T ss_dssp             SSCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred             cCCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCCHHHH
Confidence            3678999999999999998888777 99999988753 2   1             144566675422 32222221   


Q ss_pred             -ccc---cCCCCCcccEEEeCCCC
Q 045248          123 -AAL---KSPSGRKYDAVIHCATG  142 (240)
Q Consensus       123 -~~~---~~~~~~~~d~v~d~~g~  142 (240)
                       ..+   ....++++|++++++|.
T Consensus       139 ~~~v~~i~~~~~G~IDiLVNNAG~  162 (422)
T 3s8m_A          139 AQVIELIKTEMGGQVDLVVYSLAS  162 (422)
T ss_dssp             HHHHHHHHHHSCSCEEEEEECCCC
T ss_pred             HHHHHHHHHHcCCCCCEEEEcCcc
Confidence             111   11122579999999885

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=96.57  E-value=0.0068  Score=48.21  Aligned_cols=89  Identities=15%  Similarity=0.017  Sum_probs=64.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP  144 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~  144 (240)
                      -.|++|.|+| .|.+|...++.++.+|++|++.++..+...+++.|... .   +. ...+     ...|+|+-++....
T Consensus       140 l~g~~vgIIG-~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~-~---~l-~ell-----~~aDvVvl~~P~~~  208 (313)
T 2ekl_A          140 LAGKTIGIVG-FGRIGTKVGIIANAMGMKVLAYDILDIREKAEKINAKA-V---SL-EELL-----KNSDVISLHVTVSK  208 (313)
T ss_dssp             CTTCEEEEES-CSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCEE-C---CH-HHHH-----HHCSEEEECCCCCT
T ss_pred             CCCCEEEEEe-eCHHHHHHHHHHHHCCCEEEEECCCcchhHHHhcCcee-c---CH-HHHH-----hhCCEEEEeccCCh
Confidence            4788999999 99999999999999999999998754334566777542 1   11 1111     24789999987421


Q ss_pred             -----c-cccccCCCCCcEEEEeCCC
Q 045248          145 -----W-STFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       145 -----~-~~~~~~l~~~G~iv~~g~~  164 (240)
                           + ...+..+++++.++.++..
T Consensus       209 ~t~~li~~~~l~~mk~ga~lIn~arg  234 (313)
T 2ekl_A          209 DAKPIIDYPQFELMKDNVIIVNTSRA  234 (313)
T ss_dssp             TSCCSBCHHHHHHSCTTEEEEESSCG
T ss_pred             HHHHhhCHHHHhcCCCCCEEEECCCC
Confidence                 2 3455678999888888753

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=96.56  E-value=0.0054  Score=47.25  Aligned_cols=77  Identities=9%  Similarity=0.132  Sum_probs=50.4

Q ss_pred             CCCeEEEEcCCc--hHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCC--CEEE--eCCCCc--cccccC--CCC
Q 045248           66 QQKNILVTAASG--GVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGA--DEVL--DYKTPD--GAALKS--PSG  130 (240)
Q Consensus        66 ~g~~vlV~G~~g--~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~--~~v~--~~~~~~--~~~~~~--~~~  130 (240)
                      .|+++||+||+|  |+|.+.++.+...|++|+.+.++ +..+.+    ++.+.  ...+  |-.+++  ...++.  ..-
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDV   84 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            789999999776  89999999999999999999975 444443    34443  2222  222222  111111  112


Q ss_pred             CcccEEEeCCCC
Q 045248          131 RKYDAVIHCATG  142 (240)
Q Consensus       131 ~~~d~v~d~~g~  142 (240)
                      +++|++++++|.
T Consensus        85 G~iD~lvnnAg~   96 (256)
T 4fs3_A           85 GNIDGVYHSIAF   96 (256)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCCEEEecccc
Confidence            469999999883

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.56  E-value=0.0032  Score=46.29  Aligned_cols=73  Identities=19%  Similarity=0.099  Sum_probs=46.0

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      .+|+|+||+|.+|..+++.+...|.+|++++++ ++.+.....+ ..++..+-.+...+...- .++|+||.++|.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~D~~~~~~~~~~~-~~~d~vi~~a~~   77 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRP-AHVVVGDVLQAADVDKTV-AGQDAVIVLLGT   77 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCC-SEEEESCTTSHHHHHHHH-TTCSEEEECCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCc-eEEEEecCCCHHHHHHHH-cCCCEEEECccC
Confidence            689999999999999999999899999999975 3322111111 223322212211111111 358999999985

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.56  E-value=0.0036  Score=47.42  Aligned_cols=70  Identities=20%  Similarity=0.169  Sum_probs=45.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEEEe--CCCCc--cccccCC-CCCcccEEEeCCC
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLD--YKTPD--GAALKSP-SGRKYDAVIHCAT  141 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~~--~~~~~--~~~~~~~-~~~~~d~v~d~~g  141 (240)
                      ++++||+||+|++|..+++.+...|++|++++++..   .++.   ..+.  ..+.+  ...++.. ...++|+++.++|
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~---~~~~---~~~~~D~~~~~~~~~~~~~~~~~~~~d~li~~ag   75 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE---GEDL---IYVEGDVTREEDVRRAVARAQEEAPLFAVVSAAG   75 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC---SSSS---EEEECCTTCHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc---ccce---EEEeCCCCCHHHHHHHHHHHHhhCCceEEEEccc
Confidence            578999999999999999888888999999987533   1111   2332  22221  1111111 1136899999987


Q ss_pred             C
Q 045248          142 G  142 (240)
Q Consensus       142 ~  142 (240)
                      .
T Consensus        76 ~   76 (242)
T 1uay_A           76 V   76 (242)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=96.55  E-value=0.003  Score=50.92  Aligned_cols=77  Identities=17%  Similarity=0.095  Sum_probs=47.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHH-HHHhc--C-CCEEEeCCCCcccccc-CCCCCcccEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIE-FVKSL--G-ADEVLDYKTPDGAALK-SPSGRKYDAVIHC  139 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~-~~~~~--g-~~~v~~~~~~~~~~~~-~~~~~~~d~v~d~  139 (240)
                      .+.+|||+||+|.+|..+++.+...|++|+++++. .+.+ ..+.+  + ....+..+-.+...+. ...+.++|+||.+
T Consensus         8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~   87 (357)
T 1rkx_A            8 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHM   87 (357)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEEEC
Confidence            46789999999999999999998899999999964 3222 22221  1 1223322211211111 1111258999999


Q ss_pred             CCC
Q 045248          140 ATG  142 (240)
Q Consensus       140 ~g~  142 (240)
                      +|.
T Consensus        88 A~~   90 (357)
T 1rkx_A           88 AAQ   90 (357)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            984

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.55  E-value=0.011  Score=45.85  Aligned_cols=67  Identities=9%  Similarity=0.083  Sum_probs=49.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      .+|||+|+ |.+|..+++.+...|.+|++++++ .+.+.+...+... +..+-.+   +.   -.++|+||.+++.
T Consensus         6 ~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~D~~d---~~---~~~~d~vi~~a~~   73 (286)
T 3ius_A            6 GTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEP-LLWPGEE---PS---LDGVTHLLISTAP   73 (286)
T ss_dssp             CEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEE-EESSSSC---CC---CTTCCEEEECCCC
T ss_pred             CcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeE-EEecccc---cc---cCCCCEEEECCCc
Confidence            68999996 999999999999889999999975 6666666655432 2222111   11   3579999999984

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=96.54  E-value=0.0029  Score=50.61  Aligned_cols=76  Identities=17%  Similarity=0.186  Sum_probs=47.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-cc----HHHHHhc------CCC-EEE--eCCCCc--cccccCCCC
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RN----IEFVKSL------GAD-EVL--DYKTPD--GAALKSPSG  130 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~----~~~~~~~------g~~-~v~--~~~~~~--~~~~~~~~~  130 (240)
                      ++++||+|++|++|..+++.+...|++|+.+.+. ++    .+.++..      +.. .++  |..+..  ...++....
T Consensus         2 ~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~   81 (327)
T 1jtv_A            2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE   81 (327)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHhc
Confidence            5789999999999999999999999987776632 22    2222222      122 222  222222  112222223


Q ss_pred             CcccEEEeCCCC
Q 045248          131 RKYDAVIHCATG  142 (240)
Q Consensus       131 ~~~d~v~d~~g~  142 (240)
                      .++|++|.+.|.
T Consensus        82 g~iD~lVnnAG~   93 (327)
T 1jtv_A           82 GRVDVLVCNAGL   93 (327)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            579999999983

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.54  E-value=0.0038  Score=50.20  Aligned_cols=75  Identities=15%  Similarity=0.202  Sum_probs=48.2

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcc-----cHHHH---HhcCCCEEEeCCCCccccc-cCCCCCcccEEE
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGAR-----NIEFV---KSLGADEVLDYKTPDGAAL-KSPSGRKYDAVI  137 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~-----~~~~~---~~~g~~~v~~~~~~~~~~~-~~~~~~~~d~v~  137 (240)
                      ..+|||+||+|.+|..+++.+...|.+|++++++.     +.+.+   +..+.. ++..+-.+...+ ......++|+||
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~-~~~~Dl~d~~~l~~~~~~~~~d~Vi   88 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAI-IVYGLINEQEAMEKILKEHEIDIVV   88 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCE-EEECCTTCHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcE-EEEeecCCHHHHHHHHhhCCCCEEE
Confidence            46899999999999999999988999999999642     22222   234443 332222221111 111223799999


Q ss_pred             eCCCC
Q 045248          138 HCATG  142 (240)
Q Consensus       138 d~~g~  142 (240)
                      .+++.
T Consensus        89 ~~a~~   93 (346)
T 3i6i_A           89 STVGG   93 (346)
T ss_dssp             ECCCG
T ss_pred             ECCch
Confidence            99985

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.52  E-value=0.0032  Score=50.53  Aligned_cols=70  Identities=27%  Similarity=0.242  Sum_probs=44.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      .++++|||+||+|.+|..+++.+...|++|+++++. .+      .+...+ ..+-.+...+.... .++|+||.+++.
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~------~~~~~~-~~Dl~d~~~~~~~~-~~~d~vih~A~~   87 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG------TGGEEV-VGSLEDGQALSDAI-MGVSAVLHLGAF   87 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS------SCCSEE-ESCTTCHHHHHHHH-TTCSEEEECCCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC------CCccEE-ecCcCCHHHHHHHH-hCCCEEEECCcc
Confidence            467899999999999999999999999999999975 33      233322 11111111111111 279999999874

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=96.52  E-value=0.0067  Score=50.86  Aligned_cols=76  Identities=21%  Similarity=0.221  Sum_probs=50.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccH----HHHHhcCCCEEE--eCCCCc--cccc---cCCCCCccc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNI----EFVKSLGADEVL--DYKTPD--GAAL---KSPSGRKYD  134 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~----~~~~~~g~~~v~--~~~~~~--~~~~---~~~~~~~~d  134 (240)
                      +++++||+||+|++|..+++.+...|++|+.+.++...    +..++.+.. .+  |..+.+  ...+   ....+..+|
T Consensus       212 ~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~~~l~~~~~~~~~~-~~~~Dvtd~~~v~~~~~~~~~~~g~~id  290 (454)
T 3u0b_A          212 DGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAAEDLKRVADKVGGT-ALTLDVTADDAVDKITAHVTEHHGGKVD  290 (454)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHHHTCE-EEECCTTSTTHHHHHHHHHHHHSTTCCS
T ss_pred             CCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCe-EEEEecCCHHHHHHHHHHHHHHcCCCce
Confidence            57899999999999999998888889999988864322    223445543 23  223322  1111   122233599


Q ss_pred             EEEeCCCC
Q 045248          135 AVIHCATG  142 (240)
Q Consensus       135 ~v~d~~g~  142 (240)
                      ++|.+.|-
T Consensus       291 ~lV~nAGv  298 (454)
T 3u0b_A          291 ILVNNAGI  298 (454)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99999984

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=96.51  E-value=0.004  Score=47.94  Aligned_cols=92  Identities=11%  Similarity=0.046  Sum_probs=57.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHh----cCCCEEEeCCCCccccccCCCCCcccEEEeC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKS----LGADEVLDYKTPDGAALKSPSGRKYDAVIHC  139 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~  139 (240)
                      +++++||-+| +|. |..++.+++ .|.+|++++. +...+.+++    .+..  +.....+...  ......||+|+-.
T Consensus       119 ~~~~~VLDiG-cG~-G~l~~~la~-~g~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~--~~~~~~fD~Vv~n  191 (254)
T 2nxc_A          119 RPGDKVLDLG-TGS-GVLAIAAEK-LGGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEA--ALPFGPFDLLVAN  191 (254)
T ss_dssp             CTTCEEEEET-CTT-SHHHHHHHH-TTCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHH--HGGGCCEEEEEEE
T ss_pred             CCCCEEEEec-CCC-cHHHHHHHH-hCCeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhh--cCcCCCCCEEEEC
Confidence            6889999999 555 777777666 4669999995 455555543    4432  1111111111  0123579999965


Q ss_pred             CCC----CCccccccCCCCCcEEEEeCC
Q 045248          140 ATG----IPWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       140 ~g~----~~~~~~~~~l~~~G~iv~~g~  163 (240)
                      .-.    ..+..+.+.|+++|+++..+.
T Consensus       192 ~~~~~~~~~l~~~~~~LkpgG~lils~~  219 (254)
T 2nxc_A          192 LYAELHAALAPRYREALVPGGRALLTGI  219 (254)
T ss_dssp             CCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CcHHHHHHHHHHHHHHcCCCCEEEEEee
Confidence            431    225667778999999987664

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=96.51  E-value=0.0047  Score=49.23  Aligned_cols=77  Identities=16%  Similarity=0.073  Sum_probs=50.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCC--C-EEE--eCCCCc-c-ccccC--CCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGA--D-EVL--DYKTPD-G-AALKS--PSGR  131 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~--~-~v~--~~~~~~-~-~~~~~--~~~~  131 (240)
                      .++++||+||+|++|..+++.+...|++|+.++++ ++.+.+    +..+.  . .++  |..+.. . ..++.  ....
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   86 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFG   86 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhCC
Confidence            67899999999999999999999999999999975 444333    22332  1 222  222221 1 11111  1124


Q ss_pred             cccEEEeCCCC
Q 045248          132 KYDAVIHCATG  142 (240)
Q Consensus       132 ~~d~v~d~~g~  142 (240)
                      ++|++|.++|.
T Consensus        87 ~id~lv~nAg~   97 (319)
T 3ioy_A           87 PVSILCNNAGV   97 (319)
T ss_dssp             CEEEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            79999999983

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=96.51  E-value=0.0087  Score=49.61  Aligned_cols=36  Identities=22%  Similarity=0.219  Sum_probs=31.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .++.+|||+||+|.+|..+++.+...|++|++++++
T Consensus        67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~  102 (427)
T 4f6c_A           67 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRA  102 (427)
T ss_dssp             CCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEEC
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECC
Confidence            456799999999999999998888889999999965

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=96.51  E-value=0.0042  Score=48.40  Aligned_cols=75  Identities=16%  Similarity=0.203  Sum_probs=49.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCCE-EE--eCCCCc--cccccC-CCCCcccEEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGADE-VL--DYKTPD--GAALKS-PSGRKYDAVI  137 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~~-v~--~~~~~~--~~~~~~-~~~~~~d~v~  137 (240)
                      .++++||+||+|++|.++++.+...|++|+.++++ ++.+.+ ++++... .+  |..+.+  ...++. ....++|+++
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~id~lv  108 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGNRAEFVSTNVTSEDSVLAAIEAANQLGRLRYAV  108 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHTTSSEEEEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhCCCCeEE
Confidence            67899999999999999999999999999999975 444433 4555432 22  222221  111111 1224789999


Q ss_pred             eCC
Q 045248          138 HCA  140 (240)
Q Consensus       138 d~~  140 (240)
                      .+.
T Consensus       109 ~~a  111 (281)
T 3ppi_A          109 VAH  111 (281)
T ss_dssp             ECC
T ss_pred             Ecc
Confidence            884

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=96.50  E-value=0.004  Score=49.56  Aligned_cols=99  Identities=20%  Similarity=0.209  Sum_probs=62.7

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC--CEEEEEeCc-ccHHHHH----hcCCCEEEeCCCCccccccC
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN--THVTASCGA-RNIEFVK----SLGADEVLDYKTPDGAALKS  127 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g--~~v~~~~~~-~~~~~~~----~~g~~~v~~~~~~~~~~~~~  127 (240)
                      ....+     +++++||-+| +|. |..+..+++..+  .+|++++.+ +..+.++    ..|... +.....+.... .
T Consensus        69 ~~l~~-----~~~~~VLDiG-cG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~-v~~~~~d~~~~-~  139 (317)
T 1dl5_A           69 EWVGL-----DKGMRVLEIG-GGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYYG-V  139 (317)
T ss_dssp             HHTTC-----CTTCEEEEEC-CTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGC-C
T ss_pred             HhcCC-----CCcCEEEEec-CCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-eEEEECChhhc-c
Confidence            55666     7899999999 665 778888888643  479999954 5555554    345432 22111121111 0


Q ss_pred             CCCCcccEEEeCCCCCC-ccccccCCCCCcEEEEeC
Q 045248          128 PSGRKYDAVIHCATGIP-WSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       128 ~~~~~~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~g  162 (240)
                      .....||+|+....-.. ...+.+.|+|+|+++..-
T Consensus       140 ~~~~~fD~Iv~~~~~~~~~~~~~~~LkpgG~lvi~~  175 (317)
T 1dl5_A          140 PEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPI  175 (317)
T ss_dssp             GGGCCEEEEEECSBBSCCCHHHHHHEEEEEEEEEEB
T ss_pred             ccCCCeEEEEEcCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            12357999998766433 456778899999987654

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=96.49  E-value=0.0075  Score=48.24  Aligned_cols=75  Identities=16%  Similarity=0.176  Sum_probs=46.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc--cc----HHHHHhcCCCEEEeCCCCcccccc-CCCCCcccEEEeCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA--RN----IEFVKSLGADEVLDYKTPDGAALK-SPSGRKYDAVIHCA  140 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~--~~----~~~~~~~g~~~v~~~~~~~~~~~~-~~~~~~~d~v~d~~  140 (240)
                      .+|||+||+|.+|..+++.+...|++|+++++.  ..    .+.++..+....+..+-.+...++ ...+.++|+||.++
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A   81 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLA   81 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             cEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEEEECC
Confidence            369999999999999999988899999999853  11    122233332233322211211111 11112599999999


Q ss_pred             CC
Q 045248          141 TG  142 (240)
Q Consensus       141 g~  142 (240)
                      |.
T Consensus        82 ~~   83 (347)
T 1orr_A           82 GQ   83 (347)
T ss_dssp             CC
T ss_pred             cc
Confidence            85

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=96.49  E-value=0.0022  Score=52.11  Aligned_cols=76  Identities=11%  Similarity=0.056  Sum_probs=47.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhC-CCEEEEEeCc-ccHHHHHhcCCCEEEeCCCC-ccccccCCCCCcccEEEeCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLG-NTHVTASCGA-RNIEFVKSLGADEVLDYKTP-DGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~-g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~-~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      ...+|||+||+|.+|..+++.+... |.+|+++++. ++.+.+.......++..+-. +...+.... .++|+||.+++.
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~-~~~d~Vih~A~~  101 (372)
T 3slg_A           23 KAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHV-KKCDVILPLVAI  101 (372)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHH-HHCSEEEECBCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHh-ccCCEEEEcCcc
Confidence            4578999999999999999888776 8999999975 44333322121223322211 211111100 269999998874

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=96.49  E-value=0.045  Score=43.14  Aligned_cols=91  Identities=9%  Similarity=-0.045  Sum_probs=63.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC-
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI-  143 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-  143 (240)
                      ...+|.|+| .|.+|....+.+...|.+|++.+++ ++.+.+.+.|.........   ...     ...|+|+-++... 
T Consensus         6 ~~~~I~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~---e~~-----~~aDvvi~~vp~~~   76 (303)
T 3g0o_A            6 TDFHVGIVG-LGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAR---EFA-----GVVDALVILVVNAA   76 (303)
T ss_dssp             -CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSST---TTT-----TTCSEEEECCSSHH
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHH---HHH-----hcCCEEEEECCCHH
Confidence            346899999 9999999999999999999999875 7778888888654121111   111     3579999999863 


Q ss_pred             Cc-------cccccCCCCCcEEEEeCCCc
Q 045248          144 PW-------STFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus       144 ~~-------~~~~~~l~~~G~iv~~g~~~  165 (240)
                      ..       ......++++..++..+...
T Consensus        77 ~~~~v~~~~~~l~~~l~~g~ivv~~st~~  105 (303)
T 3g0o_A           77 QVRQVLFGEDGVAHLMKPGSAVMVSSTIS  105 (303)
T ss_dssp             HHHHHHC--CCCGGGSCTTCEEEECSCCC
T ss_pred             HHHHHHhChhhHHhhCCCCCEEEecCCCC
Confidence            22       33345677777777776543

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=96.48  E-value=0.0075  Score=47.54  Aligned_cols=70  Identities=20%  Similarity=0.078  Sum_probs=44.0

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      +|||+||+|.+|..+++.+...|++|+++++. ++.......+. ..+..+-.+.. +..... + |+||.+++.
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~Dl~d~~-~~~~~~-~-d~vih~A~~   72 (312)
T 3ko8_A            2 RIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNPSA-ELHVRDLKDYS-WGAGIK-G-DVVFHFAAN   72 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGSCTTS-EEECCCTTSTT-TTTTCC-C-SEEEECCSS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhcCCCc-eEEECccccHH-HHhhcC-C-CEEEECCCC
Confidence            69999999999999999999999999999864 32221111222 22221111112 222222 2 999999984

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.48  E-value=0.0059  Score=47.27  Aligned_cols=77  Identities=17%  Similarity=0.153  Sum_probs=48.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEe-Cc-ccHHH----HHhcCCC-EEEe--CCCCc--cccccCC--CCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASC-GA-RNIEF----VKSLGAD-EVLD--YKTPD--GAALKSP--SGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~-~~-~~~~~----~~~~g~~-~v~~--~~~~~--~~~~~~~--~~~~  132 (240)
                      .+++++|+||+|++|..+++.+...|++|+.+. +. ++.+.    .+..+.. ..+.  ..+..  ...++..  .-.+
T Consensus        24 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  103 (269)
T 3gk3_A           24 AKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLADFGK  103 (269)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             cCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            678899999999999999999999999999888 33 32222    2233432 2332  22221  1111110  1136


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|++|.++|.
T Consensus       104 id~li~nAg~  113 (269)
T 3gk3_A          104 VDVLINNAGI  113 (269)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999983

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=96.47  E-value=0.0034  Score=48.75  Aligned_cols=78  Identities=18%  Similarity=0.230  Sum_probs=48.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEe-Cc-ccHHH----HHhcCCC-EEE--eCCCCc--cccccCC--CCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASC-GA-RNIEF----VKSLGAD-EVL--DYKTPD--GAALKSP--SGR  131 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~-~~-~~~~~----~~~~g~~-~v~--~~~~~~--~~~~~~~--~~~  131 (240)
                      .+++++||+||+|++|.++++.+...|++|+.+. ++ ++.+.    +++.+.. ..+  |..+..  ...++..  .-.
T Consensus        24 ~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  103 (272)
T 4e3z_A           24 SDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQFG  103 (272)
T ss_dssp             CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            4678999999999999999999999999987774 43 33332    2334432 222  222211  1111111  113


Q ss_pred             cccEEEeCCCC
Q 045248          132 KYDAVIHCATG  142 (240)
Q Consensus       132 ~~d~v~d~~g~  142 (240)
                      ++|++|.++|.
T Consensus       104 ~id~li~nAg~  114 (272)
T 4e3z_A          104 RLDGLVNNAGI  114 (272)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999983

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=96.47  E-value=0.0044  Score=47.93  Aligned_cols=77  Identities=16%  Similarity=0.250  Sum_probs=48.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEe-Cc-ccHH----HHHhcCCC-EEEeCCCCccc----cccC--CCCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASC-GA-RNIE----FVKSLGAD-EVLDYKTPDGA----ALKS--PSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~-~~-~~~~----~~~~~g~~-~v~~~~~~~~~----~~~~--~~~~~  132 (240)
                      .++++||+||+|++|..+++.+...|++|+++. ++ ++.+    .+++.+.. .++..+-.+..    .++.  ....+
T Consensus        25 ~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~  104 (267)
T 4iiu_A           25 MSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQHGA  104 (267)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            568999999999999999999999999987766 33 3322    22333433 23322211211    1111  11247


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.++|.
T Consensus       105 id~li~nAg~  114 (267)
T 4iiu_A          105 WYGVVSNAGI  114 (267)
T ss_dssp             CSEEEECCCC
T ss_pred             ccEEEECCCC
Confidence            9999999984

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=96.44  E-value=0.0098  Score=50.14  Aligned_cols=89  Identities=18%  Similarity=-0.003  Sum_probs=62.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      -.|++|.|+| .|.+|..+++.++.+|++|++.++. .+...+...|.. +.   +. ...+     ...|+|+-+++..
T Consensus       275 L~GktVgIIG-~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~-~~---~l-~ell-----~~aDiVi~~~~t~  343 (494)
T 3d64_A          275 IAGKIAVVAG-YGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYR-VV---TM-EYAA-----DKADIFVTATGNY  343 (494)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCE-EC---CH-HHHT-----TTCSEEEECSSSS
T ss_pred             cCCCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCE-eC---CH-HHHH-----hcCCEEEECCCcc
Confidence            3789999999 9999999999999999999999975 443344455542 21   10 1111     3478998888643


Q ss_pred             C-c-cccccCCCCCcEEEEeCCC
Q 045248          144 P-W-STFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       144 ~-~-~~~~~~l~~~G~iv~~g~~  164 (240)
                      . + ...++.++++..++.++..
T Consensus       344 ~lI~~~~l~~MK~gAilINvgrg  366 (494)
T 3d64_A          344 HVINHDHMKAMRHNAIVCNIGHF  366 (494)
T ss_dssp             CSBCHHHHHHCCTTEEEEECSSS
T ss_pred             cccCHHHHhhCCCCcEEEEcCCC
Confidence            3 3 3566778888888888753

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=96.44  E-value=0.0059  Score=47.20  Aligned_cols=77  Identities=14%  Similarity=0.075  Sum_probs=49.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----Hh-cCCC--EEE--eCCCCc--cccccCC--CCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KS-LGAD--EVL--DYKTPD--GAALKSP--SGR  131 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~-~g~~--~v~--~~~~~~--~~~~~~~--~~~  131 (240)
                      .++++||+||++++|.++++.+...|++|+.+.++ ++.+.+    ++ .+..  ..+  |..+.+  ...++..  ...
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   86 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTLG   86 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            67899999999999999999999999999999875 443332    22 3322  222  222221  1111111  114


Q ss_pred             cccEEEeCCCC
Q 045248          132 KYDAVIHCATG  142 (240)
Q Consensus       132 ~~d~v~d~~g~  142 (240)
                      ++|+++.+.|.
T Consensus        87 ~id~lvnnAg~   97 (265)
T 3lf2_A           87 CASILVNNAGQ   97 (265)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999984

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=96.43  E-value=0.0021  Score=50.29  Aligned_cols=72  Identities=15%  Similarity=0.105  Sum_probs=46.3

Q ss_pred             eEEEEcCCchHHHHHHHHHHhC-CCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           69 NILVTAASGGVGHYAVQLAKLG-NTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~-g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      +|||+||+|.+|..+++.+... |.+|++++++ ++.+.+...+.. ++..+-.+...+... -.++|+||.++|.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~-~~~~D~~d~~~l~~~-~~~~d~vi~~a~~   75 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVS-VRQLDYFNQESMVEA-FKGMDTVVFIPSI   75 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBE-EEECCTTCHHHHHHH-TTTCSEEEECCCC
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCE-EEEcCCCCHHHHHHH-HhCCCEEEEeCCC
Confidence            5899999999999999888877 8899999975 443333333432 332221121111111 1379999999985

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=96.43  E-value=0.0036  Score=48.74  Aligned_cols=72  Identities=15%  Similarity=0.161  Sum_probs=47.1

Q ss_pred             eEEEEcCCchHHHHHHHHHHhC--CCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           69 NILVTAASGGVGHYAVQLAKLG--NTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~--g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      +|||+||+|.+|..+++.+...  |.+|++++++ ++.+.+...+.. ++..+-.+...+...- .++|+||.+++.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~-~~~~D~~d~~~l~~~~-~~~d~vi~~a~~   76 (287)
T 2jl1_A            2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVE-VRHGDYNQPESLQKAF-AGVSKLLFISGP   76 (287)
T ss_dssp             CEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCE-EEECCTTCHHHHHHHT-TTCSEEEECCCC
T ss_pred             eEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCe-EEEeccCCHHHHHHHH-hcCCEEEEcCCC
Confidence            6899999999999999888877  8999999974 554444444443 3322211211111111 358999999984

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=96.42  E-value=0.007  Score=47.04  Aligned_cols=102  Identities=14%  Similarity=0.096  Sum_probs=65.9

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhC--CCEEEEEeC-cccHHHHHh----c-C--CCEEEeCCCCcccc
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLG--NTHVTASCG-ARNIEFVKS----L-G--ADEVLDYKTPDGAA  124 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~--g~~v~~~~~-~~~~~~~~~----~-g--~~~v~~~~~~~~~~  124 (240)
                      ....+     .++.+||-.| +| .|..+..+++..  +.+|++++. ++..+.+++    . |  ...+ .....+...
T Consensus        93 ~~~~~-----~~~~~vLdiG-~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v-~~~~~d~~~  164 (280)
T 1i9g_A           93 HEGDI-----FPGARVLEAG-AG-SGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNW-RLVVSDLAD  164 (280)
T ss_dssp             HHTTC-----CTTCEEEEEC-CT-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTE-EEECSCGGG
T ss_pred             HHcCC-----CCCCEEEEEc-cc-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcE-EEEECchHh
Confidence            55566     7899999999 56 788888888865  459999995 455555543    2 4  2221 111112111


Q ss_pred             ccCCCCCcccEEEeCCCCC--CccccccCCCCCcEEEEeCCCc
Q 045248          125 LKSPSGRKYDAVIHCATGI--PWSTFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus       125 ~~~~~~~~~d~v~d~~g~~--~~~~~~~~l~~~G~iv~~g~~~  165 (240)
                      . ......||+|+-.....  .+..+.+.|+++|+++......
T Consensus       165 ~-~~~~~~~D~v~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  206 (280)
T 1i9g_A          165 S-ELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATV  206 (280)
T ss_dssp             C-CCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             c-CCCCCceeEEEECCcCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            1 11245799998766543  3777888999999998876543

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=96.42  E-value=0.0065  Score=45.74  Aligned_cols=97  Identities=18%  Similarity=0.189  Sum_probs=62.3

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhc----CCCEEEeCCCCccccccCCC
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSL----GADEVLDYKTPDGAALKSPS  129 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~----g~~~v~~~~~~~~~~~~~~~  129 (240)
                      ....+     .++.+||-+| +|. |..+..+++.. .+|++++.+ +..+.+++.    +...++..   +... ....
T Consensus        64 ~~~~~-----~~~~~vLdiG-~G~-G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~---d~~~-~~~~  131 (231)
T 1vbf_A           64 DELDL-----HKGQKVLEIG-TGI-GYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYNNIKLILG---DGTL-GYEE  131 (231)
T ss_dssp             HHTTC-----CTTCEEEEEC-CTT-SHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCSSEEEEES---CGGG-CCGG
T ss_pred             HhcCC-----CCCCEEEEEc-CCC-CHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcCCeEEEEC---Cccc-cccc
Confidence            55566     7889999999 564 77777787764 899999954 666666543    21122221   1111 0112


Q ss_pred             CCcccEEEeCCCCCC-ccccccCCCCCcEEEEeCC
Q 045248          130 GRKYDAVIHCATGIP-WSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       130 ~~~~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~g~  163 (240)
                      ...||+|+....-.. ...+.+.|+++|+++....
T Consensus       132 ~~~fD~v~~~~~~~~~~~~~~~~L~pgG~l~~~~~  166 (231)
T 1vbf_A          132 EKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIG  166 (231)
T ss_dssp             GCCEEEEEESSBBSSCCHHHHHTEEEEEEEEEEEC
T ss_pred             CCCccEEEECCcHHHHHHHHHHHcCCCcEEEEEEc
Confidence            357999987665433 5677889999999876643

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=96.41  E-value=0.0096  Score=45.53  Aligned_cols=74  Identities=19%  Similarity=0.236  Sum_probs=52.7

Q ss_pred             eEEEEcCCchHHHHHHHHHHhC-CCEEEEEeC-cccHHHHHhcCCCEEEeCCCCc--cccccCCCCCcccEEEeCCCC
Q 045248           69 NILVTAASGGVGHYAVQLAKLG-NTHVTASCG-ARNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~-g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      +|.|+|++|.+|...++.+... +.++++... .+..+.+...+++.++|++.+.  ..........+.++|+.++|-
T Consensus         2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~~~~DvvIDfT~p~a~~~~~~~a~~~g~~~VigTTG~   79 (245)
T 1p9l_A            2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGF   79 (245)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHHTTCCEEEECSCTTTHHHHHHHHHHTTCEEEECCCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhccCCcEEEEccChHHHHHHHHHHHHcCCCEEEcCCCC
Confidence            6899998899999999988865 788887664 4444444445678888888765  222333344678899988884

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=96.41  E-value=0.015  Score=46.43  Aligned_cols=90  Identities=12%  Similarity=0.010  Sum_probs=64.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      -.|++|.|+| .|.+|...++.++.+|++|++.++ ..+.+.++++|... .  .+. ...+     ...|+|+-++...
T Consensus       144 l~g~~vgIIG-~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-~--~~l-~ell-----~~aDvVil~~p~~  213 (320)
T 1gdh_A          144 LDNKTLGIYG-FGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATF-H--DSL-DSLL-----SVSQFFSLNAPST  213 (320)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEE-C--SSH-HHHH-----HHCSEEEECCCCC
T ss_pred             CCCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCCcChhhhhhcCcEE-c--CCH-HHHH-----hhCCEEEEeccCc
Confidence            4788999999 999999999999999999999998 64445566777631 1  111 1111     2478999998742


Q ss_pred             --C---c-cccccCCCCCcEEEEeCCC
Q 045248          144 --P---W-STFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       144 --~---~-~~~~~~l~~~G~iv~~g~~  164 (240)
                        +   + ...+..+++++.++.++..
T Consensus       214 ~~t~~~i~~~~l~~mk~gailIn~arg  240 (320)
T 1gdh_A          214 PETRYFFNKATIKSLPQGAIVVNTARG  240 (320)
T ss_dssp             TTTTTCBSHHHHTTSCTTEEEEECSCG
T ss_pred             hHHHhhcCHHHHhhCCCCcEEEECCCC
Confidence              1   2 2355788999999888753

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=96.41  E-value=0.0044  Score=48.53  Aligned_cols=35  Identities=14%  Similarity=0.090  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .++++||+||+|++|.++++.+...|++|+.++++
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~   56 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHN   56 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            57899999999999999999998899999999864

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.40  E-value=0.0053  Score=48.29  Aligned_cols=74  Identities=24%  Similarity=0.319  Sum_probs=47.2

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcc--------cHHHH---HhcCCCEEEeCCCCccccc-cCCCCCccc
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGAR--------NIEFV---KSLGADEVLDYKTPDGAAL-KSPSGRKYD  134 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~--------~~~~~---~~~g~~~v~~~~~~~~~~~-~~~~~~~~d  134 (240)
                      +.+|+|+||+|.+|..+++.+...|.+|++++++.        +.+.+   +..|.. ++..+-.+...+ ...  .++|
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~-~v~~D~~d~~~l~~~~--~~~d   78 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVI-LLEGDINDHETLVKAI--KQVD   78 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCE-EEECCTTCHHHHHHHH--TTCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCE-EEEeCCCCHHHHHHHH--hCCC
Confidence            35799999999999999988888899999888643        22222   234543 332221121111 111  3699


Q ss_pred             EEEeCCCCC
Q 045248          135 AVIHCATGI  143 (240)
Q Consensus       135 ~v~d~~g~~  143 (240)
                      +||.++|..
T Consensus        79 ~vi~~a~~~   87 (307)
T 2gas_A           79 IVICAAGRL   87 (307)
T ss_dssp             EEEECSSSS
T ss_pred             EEEECCccc
Confidence            999999853

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=96.39  E-value=0.0058  Score=44.66  Aligned_cols=94  Identities=16%  Similarity=0.081  Sum_probs=57.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCC----------CEEEEEeCcccHHHHHhcCCCEEE-eCCCCccc----cccCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGN----------THVTASCGARNIEFVKSLGADEVL-DYKTPDGA----ALKSPS  129 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g----------~~v~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~----~~~~~~  129 (240)
                      +++.+||-+| +|+ |..+..+++..|          .+|++++.+...    .......+ ..+-....    ......
T Consensus        21 ~~~~~vLDlG-cG~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (196)
T 2nyu_A           21 RPGLRVLDCG-AAP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----PLEGATFLCPADVTDPRTSQRILEVLP   94 (196)
T ss_dssp             CTTCEEEEET-CCS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----CCTTCEEECSCCTTSHHHHHHHHHHSG
T ss_pred             CCCCEEEEeC-CCC-CHHHHHHHHHhccccccccCCCceEEEEechhcc----cCCCCeEEEeccCCCHHHHHHHHHhcC
Confidence            7889999999 777 888999999876          689999954311    01111223 11111100    011123


Q ss_pred             CCcccEEEe-----CCCC-------------CCccccccCCCCCcEEEEeCCC
Q 045248          130 GRKYDAVIH-----CATG-------------IPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       130 ~~~~d~v~d-----~~g~-------------~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      +..||+|+-     +++.             ..+..+.+.|+++|+++.....
T Consensus        95 ~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  147 (196)
T 2nyu_A           95 GRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA  147 (196)
T ss_dssp             GGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence            457999994     3332             1255677889999998876543

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=96.38  E-value=0.0048  Score=49.85  Aligned_cols=87  Identities=8%  Similarity=0.025  Sum_probs=62.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC--
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI--  143 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~--  143 (240)
                      .|++|.|+| .|.+|...++.++.+|++|++.++..+.+.+.+.|...+   .+. ...+     ...|+|+-++...  
T Consensus       159 ~g~tvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~---~~l-~ell-----~~aDiV~l~~Plt~~  228 (352)
T 3gg9_A          159 KGQTLGIFG-YGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVA---ESK-DALF-----EQSDVLSVHLRLNDE  228 (352)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHTTCEEC---SSH-HHHH-----HHCSEEEECCCCSTT
T ss_pred             CCCEEEEEe-ECHHHHHHHHHHHhCCCEEEEECCCCCHHHHHhcCceEe---CCH-HHHH-----hhCCEEEEeccCcHH
Confidence            588999999 999999999999999999999987644555667776321   111 1111     2468888887521  


Q ss_pred             C----ccccccCCCCCcEEEEeC
Q 045248          144 P----WSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       144 ~----~~~~~~~l~~~G~iv~~g  162 (240)
                      +    -...+..+++++.++.++
T Consensus       229 t~~li~~~~l~~mk~gailIN~a  251 (352)
T 3gg9_A          229 TRSIITVADLTRMKPTALFVNTS  251 (352)
T ss_dssp             TTTCBCHHHHTTSCTTCEEEECS
T ss_pred             HHHhhCHHHHhhCCCCcEEEECC
Confidence            1    225667889999998887

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=96.37  E-value=0.0021  Score=47.16  Aligned_cols=96  Identities=15%  Similarity=0.041  Sum_probs=58.9

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCC--CEEEEEeCc-ccHHHHH----hcCCCEEEeCCCCccccccCCCCCcccEEE
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGN--THVTASCGA-RNIEFVK----SLGADEVLDYKTPDGAALKSPSGRKYDAVI  137 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g--~~v~~~~~~-~~~~~~~----~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~  137 (240)
                      +++.+||-.| +|. |..+..+++..+  .+|++++.+ +..+.++    ..|...-+.....+...........||+|+
T Consensus        21 ~~~~~vLDlG-cG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~   98 (197)
T 3eey_A           21 KEGDTVVDAT-CGN-GNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVM   98 (197)
T ss_dssp             CTTCEEEESC-CTT-SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred             CCCCEEEEcC-CCC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEE
Confidence            7889999998 554 778888888754  599999954 5555553    344311111122221122112236799998


Q ss_pred             eCCCC----------------CCccccccCCCCCcEEEEeC
Q 045248          138 HCATG----------------IPWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       138 d~~g~----------------~~~~~~~~~l~~~G~iv~~g  162 (240)
                      -..+-                ..+..+.+.|+++|+++...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~  139 (197)
T 3eey_A           99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI  139 (197)
T ss_dssp             EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence            55421                13666778899999988664

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=96.35  E-value=0.0082  Score=43.45  Aligned_cols=93  Identities=16%  Similarity=0.105  Sum_probs=57.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH----hcCCC--EEEeCCCCccccccCCCCCcccEEE
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK----SLGAD--EVLDYKTPDGAALKSPSGRKYDAVI  137 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~----~~g~~--~v~~~~~~~~~~~~~~~~~~~d~v~  137 (240)
                      +++++||=.| +| .|..+..+++. +.+|++++.+ +..+.++    +.|..  .++.   .+...+.......||+|+
T Consensus        21 ~~~~~vLDiG-cG-~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~---~~~~~l~~~~~~~fD~v~   94 (185)
T 3mti_A           21 DDESIVVDAT-MG-NGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELIL---DGHENLDHYVREPIRAAI   94 (185)
T ss_dssp             CTTCEEEESC-CT-TSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEE---SCGGGGGGTCCSCEEEEE
T ss_pred             CCCCEEEEEc-CC-CCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEe---CcHHHHHhhccCCcCEEE
Confidence            7889999888 44 47788888887 8899999954 5555553    34432  2222   111222112246799997


Q ss_pred             eCCCC-C---------------CccccccCCCCCcEEEEeCC
Q 045248          138 HCATG-I---------------PWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       138 d~~g~-~---------------~~~~~~~~l~~~G~iv~~g~  163 (240)
                      -..+- +               .+..+.+.|+|+|+++.+..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  136 (185)
T 3mti_A           95 FNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY  136 (185)
T ss_dssp             EEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence            65331 0               13566678999999877643

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=96.35  E-value=0.014  Score=47.62  Aligned_cols=33  Identities=21%  Similarity=0.151  Sum_probs=29.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHH-hCCCEEEEEeCc
Q 045248           68 KNILVTAASGGVGHYAVQLAK-LGNTHVTASCGA  100 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~-~~g~~v~~~~~~  100 (240)
                      .+|||+||+|.+|..+++.+. ..|++|+++++.
T Consensus         3 m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~   36 (397)
T 1gy8_A            3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSL   36 (397)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecC
Confidence            479999999999999998888 899999999864

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=96.33  E-value=0.0072  Score=47.11  Aligned_cols=77  Identities=23%  Similarity=0.359  Sum_probs=49.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHH----HHHhcCCC--EE--E--eCCCCc--cccccCC--CC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIE----FVKSLGAD--EV--L--DYKTPD--GAALKSP--SG  130 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~----~~~~~g~~--~v--~--~~~~~~--~~~~~~~--~~  130 (240)
                      .++++||+||+|++|.++++.+...|++|+.++++ ++.+    .+++.+..  .+  +  |-.+.+  ...++..  ..
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   89 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAWH   89 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            67899999999999999999999999999999865 4332    23344431  22  2  222221  1111111  12


Q ss_pred             CcccEEEeCCCC
Q 045248          131 RKYDAVIHCATG  142 (240)
Q Consensus       131 ~~~d~v~d~~g~  142 (240)
                      .++|+++.++|.
T Consensus        90 g~id~lv~nAg~  101 (281)
T 3svt_A           90 GRLHGVVHCAGG  101 (281)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            469999999984

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=96.33  E-value=0.008  Score=49.25  Aligned_cols=88  Identities=10%  Similarity=-0.018  Sum_probs=63.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC--
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG--  142 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~--  142 (240)
                      .|+++.|+| .|.+|...++.++.+|++|++..+. .+.+..+++|....   .+. ...+     ...|+|+-++..  
T Consensus       190 ~gktvGIIG-lG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~---~~l-~ell-----~~aDvV~l~~Plt~  259 (393)
T 2nac_A          190 EAMHVGTVA-AGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWH---ATR-EDMY-----PVCDVVTLNCPLHP  259 (393)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEEC---SSH-HHHG-----GGCSEEEECSCCCT
T ss_pred             CCCEEEEEe-ECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceec---CCH-HHHH-----hcCCEEEEecCCch
Confidence            688999999 9999999999999999999999865 56666777775421   111 1111     347899988863  


Q ss_pred             CC---c-cccccCCCCCcEEEEeCC
Q 045248          143 IP---W-STFEPNLGTNGKVIDITP  163 (240)
Q Consensus       143 ~~---~-~~~~~~l~~~G~iv~~g~  163 (240)
                      .+   + ...+..++++..++.++.
T Consensus       260 ~t~~li~~~~l~~mk~gailIN~aR  284 (393)
T 2nac_A          260 ETEHMINDETLKLFKRGAYIVNTAR  284 (393)
T ss_dssp             TTTTCBSHHHHTTSCTTEEEEECSC
T ss_pred             HHHHHhhHHHHhhCCCCCEEEECCC
Confidence            21   3 245678888888888874

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=96.31  E-value=0.011  Score=46.29  Aligned_cols=73  Identities=15%  Similarity=0.118  Sum_probs=47.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCC-CEEEEEeCc-ccH--HHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCC
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGN-THVTASCGA-RNI--EFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCAT  141 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g-~~v~~~~~~-~~~--~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g  141 (240)
                      .++|||+||+|.+|..+++.+...| .+|++++++ ++.  +.+...+.. ++..+-.+...+... -.++|+||.++|
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~-~~~~D~~d~~~l~~~-~~~~d~vi~~a~   81 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAE-VVQGDQDDQVIMELA-LNGAYATFIVTN   81 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCE-EEECCTTCHHHHHHH-HTTCSEEEECCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCE-EEEecCCCHHHHHHH-HhcCCEEEEeCC
Confidence            5789999999999999998888778 899999975 442  333444543 332221221111111 135899999987

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=96.30  E-value=0.0051  Score=50.13  Aligned_cols=75  Identities=16%  Similarity=-0.017  Sum_probs=47.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      ...+|||+||+|.+|..+++.+...|++|+++++. .+.......+. .++..+-.+...+...- .++|+||.+++.
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v-~~~~~Dl~d~~~~~~~~-~~~d~Vih~A~~  103 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCD-EFHLVDLRVMENCLKVT-EGVDHVFNLAAD  103 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCS-EEEECCTTSHHHHHHHH-TTCSEEEECCCC
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCc-eEEECCCCCHHHHHHHh-CCCCEEEECcee
Confidence            45789999999999999999888889999999964 32211111222 23322211211111111 379999999984

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=96.29  E-value=0.0067  Score=46.69  Aligned_cols=76  Identities=18%  Similarity=0.207  Sum_probs=49.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCC-EEE--eCCCCc--cccccCC---CCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGAD-EVL--DYKTPD--GAALKSP---SGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~-~v~--~~~~~~--~~~~~~~---~~~~  132 (240)
                      .++++||+||+|++|..+++.+...|++|+.++++ ++.+.+    ++.|.. ..+  |..+..  ...++..   ...+
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g~   83 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQGR   83 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            57899999999999999999999999999999865 443322    222432 222  222221  1111111   1346


Q ss_pred             ccEEEeCCC
Q 045248          133 YDAVIHCAT  141 (240)
Q Consensus       133 ~d~v~d~~g  141 (240)
                      +|+++.++|
T Consensus        84 id~lvnnAg   92 (260)
T 2qq5_A           84 LDVLVNNAY   92 (260)
T ss_dssp             CCEEEECCC
T ss_pred             ceEEEECCc
Confidence            999999994

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=96.28  E-value=0.022  Score=45.43  Aligned_cols=131  Identities=8%  Similarity=0.002  Sum_probs=70.7

Q ss_pred             eEEEEcCCchHHHHH-HHHHHhCCCEEEEEeC-c-ccH-HHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC
Q 045248           69 NILVTAASGGVGHYA-VQLAKLGNTHVTASCG-A-RNI-EFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP  144 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~-~~~a~~~g~~v~~~~~-~-~~~-~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~  144 (240)
                      +|.|+| +|.+|... +..++..+.+++++++ + ++. +.++++|...++  .+. ...+   ....+|+|+.++....
T Consensus         2 ~vgiiG-~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~--~~~-~~~l---~~~~~D~V~i~tp~~~   74 (332)
T 2glx_A            2 RWGLIG-ASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSV--TSV-EELV---GDPDVDAVYVSTTNEL   74 (332)
T ss_dssp             EEEEES-CCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCB--SCH-HHHH---TCTTCCEEEECSCGGG
T ss_pred             eEEEEc-ccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCccc--CCH-HHHh---cCCCCCEEEEeCChhH
Confidence            588999 89999876 5444447788887764 3 444 445667753222  111 1112   2246999999998755


Q ss_pred             -ccccccCCCCCcEEEEeCCCch---HHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCce
Q 045248          145 -WSTFEPNLGTNGKVIDITPGPS---AMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKL  207 (240)
Q Consensus       145 -~~~~~~~l~~~G~iv~~g~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i  207 (240)
                       ...+..++++ |+-|.+..+..   ............++..+...+.......++.+.+++++|.+
T Consensus        75 h~~~~~~al~~-Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~~g~i  140 (332)
T 2glx_A           75 HREQTLAAIRA-GKHVLCEKPLAMTLEDAREMVVAAREAGVVLGTNHHLRNAAAHRAMRDAIAEGRI  140 (332)
T ss_dssp             HHHHHHHHHHT-TCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCCGGGSHHHHHHHHHHHTTTT
T ss_pred             hHHHHHHHHHC-CCeEEEeCCCcCCHHHHHHHHHHHHHcCCEEEEeehhhcCHHHHHHHHHHHcCCC
Confidence             5556666666 45455553211   11111111111223332221212233457888888988764

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=96.28  E-value=0.0093  Score=44.83  Aligned_cols=91  Identities=15%  Similarity=0.132  Sum_probs=58.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCC-------CEEEEEeCc-ccHHHHHh----cC-------CCEEEeCCCCccccc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGN-------THVTASCGA-RNIEFVKS----LG-------ADEVLDYKTPDGAAL  125 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g-------~~v~~~~~~-~~~~~~~~----~g-------~~~v~~~~~~~~~~~  125 (240)
                      +++.+||-+| +|. |..+..+++..+       .+|++++.+ +..+.+++    .+       ...++..+.  ....
T Consensus        83 ~~~~~VLdiG-~G~-G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~--~~~~  158 (227)
T 1r18_A           83 KPGARILDVG-SGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDG--RKGY  158 (227)
T ss_dssp             CTTCEEEEES-CTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCG--GGCC
T ss_pred             CCCCEEEEEC-CCc-cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCc--ccCC
Confidence            7889999999 564 888888888766       499999954 54554432    22       112221111  1111


Q ss_pred             cCCCCCcccEEEeCCCCC-CccccccCCCCCcEEEEe
Q 045248          126 KSPSGRKYDAVIHCATGI-PWSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       126 ~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~  161 (240)
                        .....||+|+...... ....+.+.|+++|+++..
T Consensus       159 --~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lvi~  193 (227)
T 1r18_A          159 --PPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVP  193 (227)
T ss_dssp             --GGGCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEE
T ss_pred             --CcCCCccEEEECCchHHHHHHHHHHhcCCCEEEEE
Confidence              1125699999877643 367888999999988754

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=96.28  E-value=0.0052  Score=47.75  Aligned_cols=72  Identities=21%  Similarity=0.289  Sum_probs=45.3

Q ss_pred             eEEEEcCCchHHHHHHHHHHhC--CCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           69 NILVTAASGGVGHYAVQLAKLG--NTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~--g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      +|||+||+|.+|..+++.+...  |++|++++++ ++.+.+...+.. ++..+-.+...+...- .++|+||.+++.
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~D~~d~~~~~~~~-~~~d~vi~~a~~   75 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGIT-VRQADYGDEAALTSAL-QGVEKLLLISSS   75 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCE-EEECCTTCHHHHHHHT-TTCSEEEECC--
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCe-EEEcCCCCHHHHHHHH-hCCCEEEEeCCC
Confidence            4899999999999999888877  8999999964 444444444443 3322211211111111 358999999874

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=96.26  E-value=0.013  Score=46.71  Aligned_cols=35  Identities=29%  Similarity=0.269  Sum_probs=30.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .+++|||+||+|.+|..+++.+...|++|+++.++
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~   38 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRD   38 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECC
Confidence            46789999999999999999888899999988864

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=96.26  E-value=0.0068  Score=49.35  Aligned_cols=77  Identities=25%  Similarity=0.154  Sum_probs=47.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCC-CEEEEEeCc-cc-HHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGN-THVTASCGA-RN-IEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g-~~v~~~~~~-~~-~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      .+.+|||+||+|.+|..+++.+...| .+|+++++. .+ .+.++......++..+-.+...+...- .++|+||.+++.
T Consensus        31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~-~~~d~Vih~A~~  109 (377)
T 2q1s_A           31 ANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQ-DEYDYVFHLATY  109 (377)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCC-SCCSEEEECCCC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHh-hCCCEEEECCCc
Confidence            46789999999999999999999899 899999864 22 111110111122221111111121111 279999999985


Q ss_pred             C
Q 045248          143 I  143 (240)
Q Consensus       143 ~  143 (240)
                      .
T Consensus       110 ~  110 (377)
T 2q1s_A          110 H  110 (377)
T ss_dssp             S
T ss_pred             c
Confidence            3

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=96.26  E-value=0.038  Score=43.85  Aligned_cols=94  Identities=13%  Similarity=0.048  Sum_probs=55.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-c---cHHHH-Hh----cCC-CEEEeCCCCccccccCCCCCccc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-R---NIEFV-KS----LGA-DEVLDYKTPDGAALKSPSGRKYD  134 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~---~~~~~-~~----~g~-~~v~~~~~~~~~~~~~~~~~~~d  134 (240)
                      .++++||+| +|++|.+++..+...|+ +|+++.++ +   +.+.+ ++    .+. ..++++.+.+  .+.. .-..+|
T Consensus       153 ~gk~~lVlG-aGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~--~l~~-~l~~aD  228 (315)
T 3tnl_A          153 IGKKMTICG-AGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHE--QLRK-EIAESV  228 (315)
T ss_dssp             TTSEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHH--HHHH-HHHTCS
T ss_pred             cCCEEEEEC-CChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHH--HHHh-hhcCCC
Confidence            789999999 69999999999999999 88888865 2   22222 22    222 1233333211  0100 013589


Q ss_pred             EEEeCCCCCC------ccc-cccCCCCCcEEEEeCC
Q 045248          135 AVIHCATGIP------WST-FEPNLGTNGKVIDITP  163 (240)
Q Consensus       135 ~v~d~~g~~~------~~~-~~~~l~~~G~iv~~g~  163 (240)
                      +||+|++...      ... ....++++..++.+-.
T Consensus       229 iIINaTp~Gm~~~~~~~p~~~~~~l~~~~~V~DlvY  264 (315)
T 3tnl_A          229 IFTNATGVGMKPFEGETLLPSADMLRPELIVSDVVY  264 (315)
T ss_dssp             EEEECSSTTSTTSTTCCSCCCGGGCCTTCEEEESCC
T ss_pred             EEEECccCCCCCCCCCCCCCcHHHcCCCCEEEEecc
Confidence            9999986211      111 2345667666666554

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=96.25  E-value=0.0054  Score=45.48  Aligned_cols=35  Identities=23%  Similarity=0.236  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCC--EEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNT--HVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~~~  100 (240)
                      .+.+|+|+||+|.+|..+++.+...|.  +|++++++
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~   40 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARK   40 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSS
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            457899999999999999999999998  99999875

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=96.23  E-value=0.023  Score=44.16  Aligned_cols=89  Identities=13%  Similarity=0.036  Sum_probs=60.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCC--EEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCC-cccEEEeCCCCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNT--HVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGR-KYDAVIHCATGI  143 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~  143 (240)
                      .+|.|+| +|.+|...++.++..|.  +|++.+++ ++.+.+++.|...... .+. ...+     . +.|+|+.++...
T Consensus         2 ~~I~iIG-~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~-~~~-~~~~-----~~~aDvVilavp~~   73 (281)
T 2g5c_A            2 QNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGT-TSI-AKVE-----DFSPDFVMLSSPVR   73 (281)
T ss_dssp             CEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEE-SCG-GGGG-----GTCCSEEEECSCHH
T ss_pred             cEEEEEe-cCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCccccc-CCH-HHHh-----cCCCCEEEEcCCHH
Confidence            3689999 99999999999998887  89888865 6777788888642111 111 1111     3 689999999854


Q ss_pred             C----ccccccCCCCCcEEEEeCCC
Q 045248          144 P----WSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       144 ~----~~~~~~~l~~~G~iv~~g~~  164 (240)
                      .    +......++++..++.++..
T Consensus        74 ~~~~v~~~l~~~l~~~~iv~~~~~~   98 (281)
T 2g5c_A           74 TFREIAKKLSYILSEDATVTDQGSV   98 (281)
T ss_dssp             HHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred             HHHHHHHHHHhhCCCCcEEEECCCC
Confidence            3    23333457777777766543

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=96.23  E-value=0.0068  Score=49.25  Aligned_cols=88  Identities=13%  Similarity=0.041  Sum_probs=64.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCE-EEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTH-VTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~-v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      .|++|.|+| .|.+|...++.++.+|++ |++.++. .+.+.++++|+..+   .+. ...+     ...|+|+-++...
T Consensus       163 ~g~tvgIIG-~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~---~~l-~ell-----~~aDvV~l~~P~t  232 (364)
T 2j6i_A          163 EGKTIATIG-AGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRV---ENI-EELV-----AQADIVTVNAPLH  232 (364)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEEC---SSH-HHHH-----HTCSEEEECCCCS
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEec---CCH-HHHH-----hcCCEEEECCCCC
Confidence            789999999 999999999999999996 9998865 56666777774321   111 1111     2479999998742


Q ss_pred             -----Cc-cccccCCCCCcEEEEeCC
Q 045248          144 -----PW-STFEPNLGTNGKVIDITP  163 (240)
Q Consensus       144 -----~~-~~~~~~l~~~G~iv~~g~  163 (240)
                           .+ ...+..+++++.++.++.
T Consensus       233 ~~t~~li~~~~l~~mk~ga~lIn~ar  258 (364)
T 2j6i_A          233 AGTKGLINKELLSKFKKGAWLVNTAR  258 (364)
T ss_dssp             TTTTTCBCHHHHTTSCTTEEEEECSC
T ss_pred             hHHHHHhCHHHHhhCCCCCEEEECCC
Confidence                 12 235678899998988874

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=96.22  E-value=0.014  Score=49.66  Aligned_cols=78  Identities=15%  Similarity=0.175  Sum_probs=49.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCcc----cH----HHHHhcCCCE-EEeCCCCccccc-cCCCCCcc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGAR----NI----EFVKSLGADE-VLDYKTPDGAAL-KSPSGRKY  133 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~~----~~----~~~~~~g~~~-v~~~~~~~~~~~-~~~~~~~~  133 (240)
                      .+++++||+||+|++|..+++.+...|+ +|+.+.++.    +.    +.+++.|... ++..+-.+...+ ......++
T Consensus       257 ~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~~l  336 (511)
T 2z5l_A          257 QPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAYPP  336 (511)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHSCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcCCC
Confidence            5789999999999999999988889999 788887531    22    2334456432 221111121111 11111569


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |.||.+.|.
T Consensus       337 d~VVh~AGv  345 (511)
T 2z5l_A          337 NAVFHTAGI  345 (511)
T ss_dssp             SEEEECCCC
T ss_pred             cEEEECCcc
Confidence            999999984

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=96.22  E-value=0.034  Score=43.40  Aligned_cols=88  Identities=14%  Similarity=0.183  Sum_probs=56.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHH-HHHhcCC---CEEEeCCCCccccccCCCCCcccEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNIE-FVKSLGA---DEVLDYKTPDGAALKSPSGRKYDAVIHC  139 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~-~~~~~g~---~~v~~~~~~~~~~~~~~~~~~~d~v~d~  139 (240)
                      .+++++|+| +|++|.+++..+...|+ +|++..++ ++.+ .+++++.   ..+..+.+     .   . .++|+||++
T Consensus       125 ~~k~vlvlG-aGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~-----l---~-~~aDiIIna  194 (281)
T 3o8q_A          125 KGATILLIG-AGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQ-----L---K-QSYDVIINS  194 (281)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGG-----C---C-SCEEEEEEC
T ss_pred             cCCEEEEEC-chHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHH-----h---c-CCCCEEEEc
Confidence            688999999 79999999999999997 88888875 5543 3344442   22332211     1   1 579999999


Q ss_pred             CCCCCcc----ccccCCCCCcEEEEeCC
Q 045248          140 ATGIPWS----TFEPNLGTNGKVIDITP  163 (240)
Q Consensus       140 ~g~~~~~----~~~~~l~~~G~iv~~g~  163 (240)
                      ++.....    .-...++++..++.+..
T Consensus       195 Tp~gm~~~~~~l~~~~l~~~~~V~DlvY  222 (281)
T 3o8q_A          195 TSASLDGELPAIDPVIFSSRSVCYDMMY  222 (281)
T ss_dssp             SCCCC----CSCCGGGEEEEEEEEESCC
T ss_pred             CcCCCCCCCCCCCHHHhCcCCEEEEecC
Confidence            9743111    11234555555666554

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=96.21  E-value=0.013  Score=43.91  Aligned_cols=94  Identities=18%  Similarity=0.082  Sum_probs=60.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCC------CEEEEEeCc-ccHHHHHh----cC-----CC--EEEeCCCCcccccc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGN------THVTASCGA-RNIEFVKS----LG-----AD--EVLDYKTPDGAALK  126 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g------~~v~~~~~~-~~~~~~~~----~g-----~~--~v~~~~~~~~~~~~  126 (240)
                      +++.+||-+| +|. |..+..+++..+      .+|++++.+ +..+.+++    .+     ..  .++..+.  .....
T Consensus        79 ~~~~~VLdiG-~G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~--~~~~~  154 (227)
T 2pbf_A           79 KPGSRAIDVG-SGS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNI--YQVNE  154 (227)
T ss_dssp             CTTCEEEEES-CTT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCG--GGCCH
T ss_pred             CCCCEEEEEC-CCC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECCh--Hhccc
Confidence            7889999999 555 888888888876      599999954 55555543    33     11  2221111  01000


Q ss_pred             --CCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEeC
Q 045248          127 --SPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       127 --~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g  162 (240)
                        ......||+|+..... ..+..+.+.|+++|+++..-
T Consensus       155 ~~~~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lv~~~  193 (227)
T 2pbf_A          155 EEKKELGLFDAIHVGASASELPEILVDLLAENGKLIIPI  193 (227)
T ss_dssp             HHHHHHCCEEEEEECSBBSSCCHHHHHHEEEEEEEEEEE
T ss_pred             ccCccCCCcCEEEECCchHHHHHHHHHhcCCCcEEEEEE
Confidence              0123569999887764 34678888999999987654

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.21  E-value=0.024  Score=44.36  Aligned_cols=74  Identities=14%  Similarity=0.092  Sum_probs=48.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-Hhc----CCC-EEEeCCCCccccccCCCCCcccEEEe
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSL----GAD-EVLDYKTPDGAALKSPSGRKYDAVIH  138 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~----g~~-~v~~~~~~~~~~~~~~~~~~~d~v~d  138 (240)
                      ++++++|+|++|++|.+++..+...|++|+.+.++ ++.+.+ +++    +.. ...|..+.+  .+... -..+|++++
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~--~~~~~-~~~~DvlVn  194 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDA--SRAEA-VKGAHFVFT  194 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHH--HHHHH-TTTCSEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHH--HHHHH-HHhCCEEEE
Confidence            67899999999999999999999999998888865 444333 222    322 223333221  11110 023899999


Q ss_pred             CCCC
Q 045248          139 CATG  142 (240)
Q Consensus       139 ~~g~  142 (240)
                      ++|.
T Consensus       195 ~ag~  198 (287)
T 1lu9_A          195 AGAI  198 (287)
T ss_dssp             CCCT
T ss_pred             CCCc
Confidence            9973

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=96.18  E-value=0.019  Score=43.07  Aligned_cols=96  Identities=10%  Similarity=0.083  Sum_probs=60.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhC--CCEEEEEeCc-ccHHHH----HhcCCC-EEEeCCCCcc-ccccCCCCCcccE
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLG--NTHVTASCGA-RNIEFV----KSLGAD-EVLDYKTPDG-AALKSPSGRKYDA  135 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~--g~~v~~~~~~-~~~~~~----~~~g~~-~v~~~~~~~~-~~~~~~~~~~~d~  135 (240)
                      +++.+||=+|  .+.|..++.+++..  +.+|++++.+ +..+.+    ++.|.. .-+.....+. ........+.||+
T Consensus        55 ~~~~~vLdiG--~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~  132 (221)
T 3dr5_A           55 NGSTGAIAIT--PAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQL  132 (221)
T ss_dssp             TTCCEEEEES--TTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEE
T ss_pred             CCCCCEEEEc--CCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCe
Confidence            4456999888  45688888888876  5699999954 555554    345543 1122222221 1222222467999


Q ss_pred             EEeCCCCC----CccccccCCCCCcEEEEeC
Q 045248          136 VIHCATGI----PWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       136 v~d~~g~~----~~~~~~~~l~~~G~iv~~g  162 (240)
                      |+-.....    .+..+.+.|++||.++.-.
T Consensus       133 V~~d~~~~~~~~~l~~~~~~LkpGG~lv~dn  163 (221)
T 3dr5_A          133 VFGQVSPMDLKALVDAAWPLLRRGGALVLAD  163 (221)
T ss_dssp             EEECCCTTTHHHHHHHHHHHEEEEEEEEETT
T ss_pred             EEEcCcHHHHHHHHHHHHHHcCCCcEEEEeC
Confidence            98654432    2667888999999998644

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=96.16  E-value=0.011  Score=46.76  Aligned_cols=72  Identities=19%  Similarity=0.184  Sum_probs=47.8

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-c-cHHHH---HhcCCCEEEeCCCCccccc-cCCCCCcccEEEeCCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-R-NIEFV---KSLGADEVLDYKTPDGAAL-KSPSGRKYDAVIHCAT  141 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~-~~~~~---~~~g~~~v~~~~~~~~~~~-~~~~~~~~d~v~d~~g  141 (240)
                      ++|||+||+|.+|..+++.+...|.+|++++++ . +.+.+   +..|.. ++..+-.+...+ +..  .++|+||.+++
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~-~v~~Dl~d~~~l~~a~--~~~d~vi~~a~   88 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAI-IVKGELDEHEKLVELM--KKVDVVISALA   88 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCE-EEECCTTCHHHHHHHH--TTCSEEEECCC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCE-EEEecCCCHHHHHHHH--cCCCEEEECCc
Confidence            479999999999999999998889999999874 2 44333   344543 332221121111 111  35999999998


Q ss_pred             C
Q 045248          142 G  142 (240)
Q Consensus       142 ~  142 (240)
                      .
T Consensus        89 ~   89 (318)
T 2r6j_A           89 F   89 (318)
T ss_dssp             G
T ss_pred             h
Confidence            4

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=96.15  E-value=0.0036  Score=49.67  Aligned_cols=92  Identities=16%  Similarity=0.117  Sum_probs=59.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHH----hcCCC---EEEeCCCCccccccCCCCCcccEE
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVK----SLGAD---EVLDYKTPDGAALKSPSGRKYDAV  136 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~----~~g~~---~v~~~~~~~~~~~~~~~~~~~d~v  136 (240)
                      +++.+||-+| +| .|..+..+++..|++|++++. ++..+.++    ..|..   .++..+-   .... ...+.||+|
T Consensus       116 ~~~~~vLDiG-cG-~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~-~~~~~fD~V  189 (312)
T 3vc1_A          116 GPDDTLVDAG-CG-RGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM---LDTP-FDKGAVTAS  189 (312)
T ss_dssp             CTTCEEEEES-CT-TSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TSCC-CCTTCEEEE
T ss_pred             CCCCEEEEec-CC-CCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh---hcCC-CCCCCEeEE
Confidence            7899999998 44 578888888877899999995 45555554    34432   2221111   1111 134679999


Q ss_pred             EeCCC----C--CCccccccCCCCCcEEEEeC
Q 045248          137 IHCAT----G--IPWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       137 ~d~~g----~--~~~~~~~~~l~~~G~iv~~g  162 (240)
                      +..-.    .  ..+..+.+.|+|+|+++...
T Consensus       190 ~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~  221 (312)
T 3vc1_A          190 WNNESTMYVDLHDLFSEHSRFLKVGGRYVTIT  221 (312)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EECCchhhCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            76432    1  22667788999999998775

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=96.14  E-value=0.0083  Score=48.06  Aligned_cols=33  Identities=18%  Similarity=0.114  Sum_probs=29.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      +++|||+||+|.+|..+++.+...|++|+++++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r   34 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEec
Confidence            368999999999999999988888999999875

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=96.14  E-value=0.002  Score=52.02  Aligned_cols=35  Identities=20%  Similarity=0.222  Sum_probs=29.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCC-CEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGN-THVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g-~~v~~~~~~  100 (240)
                      ++.+|||+||+|.+|..+++.+...| .+|+++.+.
T Consensus        45 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~   80 (357)
T 2x6t_A           45 EGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNL   80 (357)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecC
Confidence            45789999999999999999888889 799998864

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=96.14  E-value=0.021  Score=46.26  Aligned_cols=86  Identities=10%  Similarity=0.026  Sum_probs=61.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC--
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI--  143 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~--  143 (240)
                      .|++|.|+| .|.+|...++.++.+|++|++.++..+.+.+.+.|...    .+. ...+     ...|+|+-++...  
T Consensus       175 ~gktvGIIG-lG~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~----~~l-~ell-----~~aDvV~l~~Plt~~  243 (365)
T 4hy3_A          175 AGSEIGIVG-FGDLGKALRRVLSGFRARIRVFDPWLPRSMLEENGVEP----ASL-EDVL-----TKSDFIFVVAAVTSE  243 (365)
T ss_dssp             SSSEEEEEC-CSHHHHHHHHHHTTSCCEEEEECSSSCHHHHHHTTCEE----CCH-HHHH-----HSCSEEEECSCSSCC
T ss_pred             CCCEEEEec-CCcccHHHHHhhhhCCCEEEEECCCCCHHHHhhcCeee----CCH-HHHH-----hcCCEEEEcCcCCHH
Confidence            588999999 99999999999999999999998765556666777531    111 1111     2468888777531  


Q ss_pred             C----ccccccCCCCCcEEEEeC
Q 045248          144 P----WSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       144 ~----~~~~~~~l~~~G~iv~~g  162 (240)
                      +    -...+..+++++.++.++
T Consensus       244 T~~li~~~~l~~mk~gailIN~a  266 (365)
T 4hy3_A          244 NKRFLGAEAFSSMRRGAAFILLS  266 (365)
T ss_dssp             ---CCCHHHHHTSCTTCEEEECS
T ss_pred             HHhhcCHHHHhcCCCCcEEEECc
Confidence            1    235567788999888887

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=96.14  E-value=0.0049  Score=48.73  Aligned_cols=34  Identities=24%  Similarity=0.238  Sum_probs=29.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      +++|||+||+|.+|..+++.+...|++|++++++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~   35 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFR   35 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC--
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccC
Confidence            4689999999999999999999899999999864

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=96.11  E-value=0.049  Score=43.32  Aligned_cols=90  Identities=13%  Similarity=0.092  Sum_probs=61.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC-
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI-  143 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-  143 (240)
                      ...+|.|+| .|.+|....+.+...|.+|++.+++ ++.+.+.+.|.... .  +. ....     ...|+|+-++..+ 
T Consensus        30 ~~~~I~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~-~--~~-~e~~-----~~aDvVi~~vp~~~   99 (320)
T 4dll_A           30 YARKITFLG-TGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIH-E--QA-RAAA-----RDADIVVSMLENGA   99 (320)
T ss_dssp             CCSEEEEEC-CTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEE-S--SH-HHHH-----TTCSEEEECCSSHH
T ss_pred             CCCEEEEEC-ccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEee-C--CH-HHHH-----hcCCEEEEECCCHH
Confidence            446899999 9999999999999999999998875 67777777765321 1  10 1111     3478999999753 


Q ss_pred             Ccccc------ccCCCCCcEEEEeCCCc
Q 045248          144 PWSTF------EPNLGTNGKVIDITPGP  165 (240)
Q Consensus       144 ~~~~~------~~~l~~~G~iv~~g~~~  165 (240)
                      .+...      ...++++..++.++...
T Consensus       100 ~~~~v~~~~~~~~~l~~~~~vi~~st~~  127 (320)
T 4dll_A          100 VVQDVLFAQGVAAAMKPGSLFLDMASIT  127 (320)
T ss_dssp             HHHHHHTTTCHHHHCCTTCEEEECSCCC
T ss_pred             HHHHHHcchhHHhhCCCCCEEEecCCCC
Confidence            23333      33567777777776543

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=96.10  E-value=0.0058  Score=46.78  Aligned_cols=97  Identities=13%  Similarity=0.043  Sum_probs=60.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCC--CEEEEEeCc-ccHHHHH----hcCCCEEEeCCCCcc-ccccC-CCCCcccE
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGN--THVTASCGA-RNIEFVK----SLGADEVLDYKTPDG-AALKS-PSGRKYDA  135 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g--~~v~~~~~~-~~~~~~~----~~g~~~v~~~~~~~~-~~~~~-~~~~~~d~  135 (240)
                      .++.+||-+| +| .|..+..+++..+  .+|++++.+ +..+.++    +.|...-+.....+. ..... .....||+
T Consensus        62 ~~~~~VLdiG-~G-~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~  139 (248)
T 3tfw_A           62 TQAKRILEIG-TL-GGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDL  139 (248)
T ss_dssp             HTCSEEEEEC-CT-TSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSE
T ss_pred             cCCCEEEEec-CC-chHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEE
Confidence            5778999998 44 4788888898874  599999954 5555554    445431111111221 11111 12347999


Q ss_pred             EEeCCCC----CCccccccCCCCCcEEEEeCC
Q 045248          136 VIHCATG----IPWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       136 v~d~~g~----~~~~~~~~~l~~~G~iv~~g~  163 (240)
                      |+-....    ..+..+.+.|++||.++.-..
T Consensus       140 V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~  171 (248)
T 3tfw_A          140 IFIDADKPNNPHYLRWALRYSRPGTLIIGDNV  171 (248)
T ss_dssp             EEECSCGGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             EEECCchHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence            9843332    127778899999999887554

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=96.09  E-value=0.022  Score=46.69  Aligned_cols=35  Identities=26%  Similarity=0.168  Sum_probs=30.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHh-CCCEEEEEeC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKL-GNTHVTASCG   99 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~-~g~~v~~~~~   99 (240)
                      ..++++||+||++|+|+++.+.+.. .|++|+.+.+
T Consensus        45 ~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~   80 (405)
T 3zu3_A           45 NGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFF   80 (405)
T ss_dssp             TCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEEC
T ss_pred             CCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeC
Confidence            4678899999999999998888877 9999998874

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=96.09  E-value=0.009  Score=48.23  Aligned_cols=88  Identities=17%  Similarity=0.119  Sum_probs=64.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC--
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG--  142 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~--  142 (240)
                      .|++|.|+| .|.+|...++.++.+|++|++..+. ...+.+++.|...+   .+. ...+     ...|+|+-++..  
T Consensus       163 ~gktvGIIG-~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~---~~l-~ell-----~~aDvV~l~~Plt~  232 (351)
T 3jtm_A          163 EGKTIGTVG-AGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFV---EDL-NEML-----PKCDVIVINMPLTE  232 (351)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEEC---SCH-HHHG-----GGCSEEEECSCCCT
T ss_pred             cCCEEeEEE-eCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEc---CCH-HHHH-----hcCCEEEECCCCCH
Confidence            689999999 9999999999999999999999865 56777777776322   111 1111     347899888863  


Q ss_pred             CC---c-cccccCCCCCcEEEEeCC
Q 045248          143 IP---W-STFEPNLGTNGKVIDITP  163 (240)
Q Consensus       143 ~~---~-~~~~~~l~~~G~iv~~g~  163 (240)
                      .+   + ...+..++++..++.++.
T Consensus       233 ~t~~li~~~~l~~mk~gailIN~aR  257 (351)
T 3jtm_A          233 KTRGMFNKELIGKLKKGVLIVNNAR  257 (351)
T ss_dssp             TTTTCBSHHHHHHSCTTEEEEECSC
T ss_pred             HHHHhhcHHHHhcCCCCCEEEECcC
Confidence            11   2 355667899998888874

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=96.08  E-value=0.0068  Score=49.08  Aligned_cols=33  Identities=21%  Similarity=0.209  Sum_probs=29.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ++|||+||+|.+|..+++.+...|++|+++++.
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~   34 (372)
T 1db3_A            2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRR   34 (372)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC-
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEECC
Confidence            579999999999999999888889999999864

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=96.07  E-value=0.01  Score=45.44  Aligned_cols=72  Identities=19%  Similarity=0.162  Sum_probs=46.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCc--cccccC--CCCCcccEEEeCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPD--GAALKS--PSGRKYDAVIHCA  140 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~--~~~~~~--~~~~~~d~v~d~~  140 (240)
                      -++++||+||+|++|.++++.+...|++|++++++ ++.+.     ....++..+..  ...++.  ....++|+++.++
T Consensus        21 m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~-----~~~~~d~~d~~~v~~~~~~~~~~~g~iD~li~~A   95 (251)
T 3orf_A           21 MSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNAD-----HSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAA   95 (251)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSS-----EEEECSCSSHHHHHHHHHHHHTTTCCEEEEEECC
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccc-----cceEEEeCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            47899999999999999999999999999999975 32210     01112222211  111111  1224799999999


Q ss_pred             CC
Q 045248          141 TG  142 (240)
Q Consensus       141 g~  142 (240)
                      |.
T Consensus        96 g~   97 (251)
T 3orf_A           96 GG   97 (251)
T ss_dssp             CC
T ss_pred             cc
Confidence            83

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=96.06  E-value=0.0053  Score=45.32  Aligned_cols=72  Identities=21%  Similarity=0.251  Sum_probs=44.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCCEEEeCCCCccccccCCC--CCcccEEEeCCCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGADEVLDYKTPDGAALKSPS--GRKYDAVIHCATG  142 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~~v~~~~~~~~~~~~~~~--~~~~d~v~d~~g~  142 (240)
                      +++||+||+|++|..+++.+...  +|++++++ ++.+.+ ++++. ..+..+-.+...++...  ..++|+++.++|.
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~   76 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELAREVGA-RALPADLADELEAKALLEEAGPLDLLVHAVGK   76 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHHTC-EECCCCTTSHHHHHHHHHHHCSEEEEEECCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhccC-cEEEeeCCCHHHHHHHHHhcCCCCEEEECCCc
Confidence            36899999999999988877766  99988875 444433 33433 33322211211111111  2479999999984

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=96.06  E-value=0.0035  Score=49.86  Aligned_cols=91  Identities=15%  Similarity=0.189  Sum_probs=61.2

Q ss_pred             CCeEEEEcCCchHHHHHHHHHH--hCCCEEEEEeC-c-cc--HHHHHhcCCCEEEeCCCCc-cccccCCCCCcccEEEeC
Q 045248           67 QKNILVTAASGGVGHYAVQLAK--LGNTHVTASCG-A-RN--IEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHC  139 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~--~~g~~v~~~~~-~-~~--~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~  139 (240)
                      .-+|.|+| +|.+|...++.+.  ..+.+++++++ + ++  .+.++++|....  +  .+ ...+..+...++|+|+++
T Consensus         4 ~irVaIIG-~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~--~--~~~e~ll~~~~~~~iDvV~~a   78 (312)
T 1nvm_B            4 KLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTT--Y--AGVEGLIKLPEFADIDFVFDA   78 (312)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEE--S--SHHHHHHHSGGGGGEEEEEEC
T ss_pred             CCEEEEEc-CcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcc--c--CCHHHHHhccCCCCCcEEEEC
Confidence            35799999 8999999888774  34567777774 3 45  566778886422  1  12 222333334679999999


Q ss_pred             CCCCC-ccccccCCCC--CcEEEEeC
Q 045248          140 ATGIP-WSTFEPNLGT--NGKVIDIT  162 (240)
Q Consensus       140 ~g~~~-~~~~~~~l~~--~G~iv~~g  162 (240)
                      ++... ...+..+++.  |.++++..
T Consensus        79 tp~~~h~~~a~~al~a~~Gk~Vi~ek  104 (312)
T 1nvm_B           79 TSASAHVQNEALLRQAKPGIRLIDLT  104 (312)
T ss_dssp             SCHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             CChHHHHHHHHHHHHhCCCCEEEEcC
Confidence            99644 6667777777  77777643

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=96.05  E-value=0.0052  Score=47.21  Aligned_cols=76  Identities=21%  Similarity=0.201  Sum_probs=46.2

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhC--CCEEEEEeCc-ccHHHH-HhcCCC-EEE--eCCCCc--cccccC--CCCCcccE
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLG--NTHVTASCGA-RNIEFV-KSLGAD-EVL--DYKTPD--GAALKS--PSGRKYDA  135 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~--g~~v~~~~~~-~~~~~~-~~~g~~-~v~--~~~~~~--~~~~~~--~~~~~~d~  135 (240)
                      ++++||+||++++|.++++.+...  |++|+.+.++ ++.+.+ ++++.. ..+  |..+.+  ...++.  ....++|+
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   81 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHGKIDS   81 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHhcCCccE
Confidence            578999999999999988766655  4688888865 444444 344432 222  222221  111111  11247999


Q ss_pred             EEeCCCC
Q 045248          136 VIHCATG  142 (240)
Q Consensus       136 v~d~~g~  142 (240)
                      ++.+.|.
T Consensus        82 lvnnAg~   88 (254)
T 3kzv_A           82 LVANAGV   88 (254)
T ss_dssp             EEEECCC
T ss_pred             EEECCcc
Confidence            9999984

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=96.04  E-value=0.013  Score=46.32  Aligned_cols=73  Identities=12%  Similarity=0.230  Sum_probs=47.4

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcc-------cHHHH---HhcCCCEEEeCCCCccccc-cCCCCCcccE
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGAR-------NIEFV---KSLGADEVLDYKTPDGAAL-KSPSGRKYDA  135 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~-------~~~~~---~~~g~~~v~~~~~~~~~~~-~~~~~~~~d~  135 (240)
                      ..+|+|+||+|.+|..+++.+...|.+|++++++.       +.+.+   ...+.. ++..+-.+...+ ...  .++|+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~-~v~~D~~d~~~l~~a~--~~~d~   80 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVT-IIEGEMEEHEKMVSVL--KQVDI   80 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCE-EEECCTTCHHHHHHHH--TTCSE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcE-EEEecCCCHHHHHHHH--cCCCE
Confidence            46799999999999999998888899999988643       22222   233443 332221221111 111  35999


Q ss_pred             EEeCCCC
Q 045248          136 VIHCATG  142 (240)
Q Consensus       136 v~d~~g~  142 (240)
                      ||.+++.
T Consensus        81 vi~~a~~   87 (321)
T 3c1o_A           81 VISALPF   87 (321)
T ss_dssp             EEECCCG
T ss_pred             EEECCCc
Confidence            9999985

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=96.03  E-value=0.011  Score=45.94  Aligned_cols=96  Identities=17%  Similarity=0.102  Sum_probs=62.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHh-C-CCEEEEEeC-cccHHHHHh----c-CCCEEEeCCCCccccccCCCCCcccEE
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKL-G-NTHVTASCG-ARNIEFVKS----L-GADEVLDYKTPDGAALKSPSGRKYDAV  136 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~-~-g~~v~~~~~-~~~~~~~~~----~-g~~~v~~~~~~~~~~~~~~~~~~~d~v  136 (240)
                      +++.+||-.| +| .|..+..+++. . +.+|++++. ++..+.+++    . |...+ .....+...  ......||+|
T Consensus       109 ~~~~~VLD~G-~G-~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v-~~~~~d~~~--~~~~~~fD~V  183 (275)
T 1yb2_A          109 RPGMDILEVG-VG-SGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNV-RTSRSDIAD--FISDQMYDAV  183 (275)
T ss_dssp             CTTCEEEEEC-CT-TSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTE-EEECSCTTT--CCCSCCEEEE
T ss_pred             CCcCEEEEec-CC-CCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcE-EEEECchhc--cCcCCCccEE
Confidence            7899999998 44 67777788886 3 569999995 455555543    3 53221 111111111  1223579999


Q ss_pred             EeCCCC--CCccccccCCCCCcEEEEeCCCc
Q 045248          137 IHCATG--IPWSTFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus       137 ~d~~g~--~~~~~~~~~l~~~G~iv~~g~~~  165 (240)
                      +-....  ..+..+.+.|+++|+++......
T Consensus       184 i~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  214 (275)
T 1yb2_A          184 IADIPDPWNHVQKIASMMKPGSVATFYLPNF  214 (275)
T ss_dssp             EECCSCGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred             EEcCcCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            976654  23778888999999998876543

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=96.03  E-value=0.0081  Score=48.45  Aligned_cols=89  Identities=16%  Similarity=0.041  Sum_probs=61.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC--
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI--  143 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~--  143 (240)
                      .|.+|.|+| .|.+|...++.++.+|++|++..+....+..++.|+..+   .+. ...+     ...|+|+-++...  
T Consensus       167 ~g~tvGIIG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~---~~l-~ell-----~~aDvV~l~~P~t~~  236 (347)
T 1mx3_A          167 RGETLGIIG-LGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRV---STL-QDLL-----FHSDCVTLHCGLNEH  236 (347)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEEC---SSH-HHHH-----HHCSEEEECCCCCTT
T ss_pred             CCCEEEEEe-ECHHHHHHHHHHHHCCCEEEEECCCcchhhHhhcCCeec---CCH-HHHH-----hcCCEEEEcCCCCHH
Confidence            688999999 999999999999999999999886422233455665321   111 1111     2478998888632  


Q ss_pred             C---c-cccccCCCCCcEEEEeCCC
Q 045248          144 P---W-STFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       144 ~---~-~~~~~~l~~~G~iv~~g~~  164 (240)
                      +   + ...+..++++..++.++..
T Consensus       237 t~~li~~~~l~~mk~gailIN~arg  261 (347)
T 1mx3_A          237 NHHLINDFTVKQMRQGAFLVNTARG  261 (347)
T ss_dssp             CTTSBSHHHHTTSCTTEEEEECSCT
T ss_pred             HHHHhHHHHHhcCCCCCEEEECCCC
Confidence            1   2 3456788888888888743

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=96.02  E-value=0.044  Score=44.63  Aligned_cols=132  Identities=13%  Similarity=0.003  Sum_probs=76.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHh--------CCCEEEEEeC-c-cc-HHHHHhcCCCEEEeCCCCccccccCCCCCcccEE
Q 045248           68 KNILVTAASGGVGHYAVQLAKL--------GNTHVTASCG-A-RN-IEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAV  136 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~--------~g~~v~~~~~-~-~~-~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v  136 (240)
                      =+|.|+| +|.+|...+...+.        -++++++++. + ++ .+.++++|...++.  +. ...+   ....+|+|
T Consensus        26 irvgiIG-~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~--d~-~ell---~~~~iDaV   98 (393)
T 4fb5_A           26 LGIGLIG-TGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATA--DW-RALI---ADPEVDVV   98 (393)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEES--CH-HHHH---HCTTCCEE
T ss_pred             ccEEEEc-CCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecC--CH-HHHh---cCCCCcEE
Confidence            4899999 89999765544332        2568998884 3 44 45567888776653  11 1112   23569999


Q ss_pred             EeCCCCCC-ccccccCCCCCcEEEEeCCCchHHH---HHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCce
Q 045248          137 IHCATGIP-WSTFEPNLGTNGKVIDITPGPSAML---TFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKL  207 (240)
Q Consensus       137 ~d~~g~~~-~~~~~~~l~~~G~iv~~g~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i  207 (240)
                      +-++.... ...+..+++. |+=|++..+-....   .........++..+...+.......++.+.+++++|.+
T Consensus        99 ~IatP~~~H~~~a~~al~a-GkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~vg~~~R~~p~~~~~k~~i~~G~i  172 (393)
T 4fb5_A           99 SVTTPNQFHAEMAIAALEA-GKHVWCEKPMAPAYADAERMLATAERSGKVAALGYNYIQNPVMRHIRKLVGDGVI  172 (393)
T ss_dssp             EECSCGGGHHHHHHHHHHT-TCEEEECSCSCSSHHHHHHHHHHHHHSSSCEEECCGGGGCHHHHHHHHHHHTTTT
T ss_pred             EECCChHHHHHHHHHHHhc-CCeEEEccCCcccHHHHHHhhhhHHhcCCccccccccccChHHHHHHHHHHcCCC
Confidence            99998755 6667777765 66677775422111   11112222223333222222334467888888888765

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=96.01  E-value=0.022  Score=42.58  Aligned_cols=94  Identities=17%  Similarity=0.126  Sum_probs=59.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCC--CEEEEEeCc-ccHHHHH----hcCC-----CEEEeCCCCccccccCCCCCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGN--THVTASCGA-RNIEFVK----SLGA-----DEVLDYKTPDGAALKSPSGRK  132 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g--~~v~~~~~~-~~~~~~~----~~g~-----~~v~~~~~~~~~~~~~~~~~~  132 (240)
                      +++.+||-+| +|. |..+..+++..|  .+|++++.+ ...+.++    ..|.     ..+ .....+.... ......
T Consensus        76 ~~~~~vLDiG-~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v-~~~~~d~~~~-~~~~~~  151 (226)
T 1i1n_A           76 HEGAKALDVG-SGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRV-QLVVGDGRMG-YAEEAP  151 (226)
T ss_dssp             CTTCEEEEET-CTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSE-EEEESCGGGC-CGGGCC
T ss_pred             CCCCEEEEEc-CCc-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcE-EEEECCcccC-cccCCC
Confidence            7889999998 554 777888888765  599999954 5555553    3221     111 1111111110 112356


Q ss_pred             ccEEEeCCCC-CCccccccCCCCCcEEEEeC
Q 045248          133 YDAVIHCATG-IPWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       133 ~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g  162 (240)
                      ||+|+..... ..+..+.+.|+++|+++..-
T Consensus       152 fD~i~~~~~~~~~~~~~~~~LkpgG~lv~~~  182 (226)
T 1i1n_A          152 YDAIHVGAAAPVVPQALIDQLKPGGRLILPV  182 (226)
T ss_dssp             EEEEEECSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             cCEEEECCchHHHHHHHHHhcCCCcEEEEEE
Confidence            9999876654 34778889999999987654

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=96.01  E-value=0.02  Score=43.09  Aligned_cols=94  Identities=14%  Similarity=0.032  Sum_probs=59.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCC-CEEEEEeCc-ccHHHHHhcCC--CEE--EeCCCCccccccCCCCCcccEEEe
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGN-THVTASCGA-RNIEFVKSLGA--DEV--LDYKTPDGAALKSPSGRKYDAVIH  138 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g-~~v~~~~~~-~~~~~~~~~g~--~~v--~~~~~~~~~~~~~~~~~~~d~v~d  138 (240)
                      +++.+||-+| +|. |..+..+++..| .+|++++.+ +..+.+++...  ..+  +..+.......... ...||+|+.
T Consensus        73 ~~~~~VLDlG-cG~-G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~-~~~~D~v~~  149 (230)
T 1fbn_A           73 KRDSKILYLG-ASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANI-VEKVDVIYE  149 (230)
T ss_dssp             CTTCEEEEES-CCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTT-SCCEEEEEE
T ss_pred             CCCCEEEEEc-ccC-CHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCccccccc-CccEEEEEE
Confidence            6889999999 665 888888999887 599999954 56666643321  111  11111110000111 257999996


Q ss_pred             CCCCC----C-ccccccCCCCCcEEEEe
Q 045248          139 CATGI----P-WSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       139 ~~g~~----~-~~~~~~~l~~~G~iv~~  161 (240)
                      .+..+    . +..+.+.|+|+|+++..
T Consensus       150 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          150 DVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             CCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            65543    1 66777899999998875

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=95.99  E-value=0.052  Score=42.09  Aligned_cols=86  Identities=14%  Similarity=0.064  Sum_probs=59.7

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCC-EEEeCCCCccccccCCCCCcccEEEeCCCCCC--
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGAD-EVLDYKTPDGAALKSPSGRKYDAVIHCATGIP--  144 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~--  144 (240)
                      +|.|+| +|.+|...+..+...|.+|++.+++ ++.+.+++.|.. .+..  +     ..+.  .+.|+|+-++....  
T Consensus         2 ~i~iiG-~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~--~-----~~~~--~~~D~vi~av~~~~~~   71 (279)
T 2f1k_A            2 KIGVVG-LGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQ--D-----LSLL--QTAKIIFLCTPIQLIL   71 (279)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEES--C-----GGGG--TTCSEEEECSCHHHHH
T ss_pred             EEEEEc-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccC--C-----HHHh--CCCCEEEEECCHHHHH
Confidence            588999 9999999999888889999888865 667777777753 2211  1     1111  46899999998543  


Q ss_pred             --ccccccCCCCCcEEEEeCCC
Q 045248          145 --WSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       145 --~~~~~~~l~~~G~iv~~g~~  164 (240)
                        +......++++..++.++..
T Consensus        72 ~~~~~l~~~~~~~~~vv~~~~~   93 (279)
T 2f1k_A           72 PTLEKLIPHLSPTAIVTDVASV   93 (279)
T ss_dssp             HHHHHHGGGSCTTCEEEECCSC
T ss_pred             HHHHHHHhhCCCCCEEEECCCC
Confidence              33344556777777776543

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=95.99  E-value=0.0087  Score=47.96  Aligned_cols=88  Identities=16%  Similarity=0.160  Sum_probs=62.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP  144 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~  144 (240)
                      .+.+|.|+| .|.+|...++.++..|.+|++.++. ++.+.+.+.|...+    +. ...+     ...|+|+.++....
T Consensus       154 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~l-~e~l-----~~aDvVi~~vp~~~  222 (330)
T 2gcg_A          154 TQSTVGIIG-LGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFV----ST-PELA-----AQSDFIVVACSLTP  222 (330)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEEC----CH-HHHH-----HHCSEEEECCCCCT
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeC----CH-HHHH-----hhCCEEEEeCCCCh
Confidence            578999999 8999999999999999999999864 56666666664321    11 1111     24799999997421


Q ss_pred             -----c-cccccCCCCCcEEEEeCCC
Q 045248          145 -----W-STFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       145 -----~-~~~~~~l~~~G~iv~~g~~  164 (240)
                           + ...+..++++..++.++..
T Consensus       223 ~t~~~i~~~~~~~mk~gailIn~srg  248 (330)
T 2gcg_A          223 ATEGLCNKDFFQKMKETAVFINISRG  248 (330)
T ss_dssp             TTTTCBSHHHHHHSCTTCEEEECSCG
T ss_pred             HHHHhhCHHHHhcCCCCcEEEECCCC
Confidence                 2 2345678888888877653

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.98  E-value=0.037  Score=38.73  Aligned_cols=95  Identities=12%  Similarity=0.126  Sum_probs=59.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc--ccHHHHH---hcCCCEEEeCCCCccccccCCCCCcccEEEeCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA--RNIEFVK---SLGADEVLDYKTPDGAALKSPSGRKYDAVIHCA  140 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~--~~~~~~~---~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~  140 (240)
                      ..++++|+| .|.+|...++.+...|.+|++++++  ++.+.++   ..|. .++..+..+...++..+-.+.|+|+-++
T Consensus         2 ~~~~vlI~G-~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~-~~i~gd~~~~~~l~~a~i~~ad~vi~~~   79 (153)
T 1id1_A            2 RKDHFIVCG-HSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNA-DVIPGDSNDSSVLKKAGIDRCRAILALS   79 (153)
T ss_dssp             CCSCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTC-EEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred             CCCcEEEEC-CCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCC-eEEEcCCCCHHHHHHcChhhCCEEEEec
Confidence            356799999 7999999999999999999999874  4444443   2243 3443332222223222335789999999


Q ss_pred             CCCC----ccccccCCCCCcEEEEeC
Q 045248          141 TGIP----WSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       141 g~~~----~~~~~~~l~~~G~iv~~g  162 (240)
                      +...    .....+.+.+..+++..-
T Consensus        80 ~~d~~n~~~~~~a~~~~~~~~ii~~~  105 (153)
T 1id1_A           80 DNDADNAFVVLSAKDMSSDVKTVLAV  105 (153)
T ss_dssp             SCHHHHHHHHHHHHHHTSSSCEEEEC
T ss_pred             CChHHHHHHHHHHHHHCCCCEEEEEE
Confidence            8643    222333444555666544

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=95.96  E-value=0.011  Score=45.61  Aligned_cols=35  Identities=26%  Similarity=0.246  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCC--chHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAAS--GGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~--g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .++++||+||+  +++|..+++.+...|++|+.+.+.
T Consensus        19 ~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~   55 (267)
T 3gdg_A           19 KGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYAS   55 (267)
T ss_dssp             TTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSS
T ss_pred             CCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCC
Confidence            67899999998  899999999999999999998853

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=95.96  E-value=0.014  Score=45.91  Aligned_cols=73  Identities=18%  Similarity=0.304  Sum_probs=47.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcc------cHHHHH---hcCCCEEEeCCCCccccc-cCCCCCcccEE
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGAR------NIEFVK---SLGADEVLDYKTPDGAAL-KSPSGRKYDAV  136 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~------~~~~~~---~~g~~~v~~~~~~~~~~~-~~~~~~~~d~v  136 (240)
                      ..+|+|+||+|.+|..+++.+...|.+|++++++.      +.+.++   ..+. .++..+-.+...+ +..  .++|+|
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~d~~~l~~~~--~~~d~v   80 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGA-KLIEASLDDHQRLVDAL--KQVDVV   80 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTC-EEECCCSSCHHHHHHHH--TTCSEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCe-EEEeCCCCCHHHHHHHH--hCCCEE
Confidence            46799999999999999999888899999998642      222222   2343 2332211121111 111  369999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      |.+++.
T Consensus        81 i~~a~~   86 (313)
T 1qyd_A           81 ISALAG   86 (313)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            999984

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=95.96  E-value=0.0022  Score=48.76  Aligned_cols=94  Identities=7%  Similarity=-0.079  Sum_probs=59.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHhcC----CC-EEEeCCCCccccccCCCCCcccEE-E
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLG----AD-EVLDYKTPDGAALKSPSGRKYDAV-I  137 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g----~~-~v~~~~~~~~~~~~~~~~~~~d~v-~  137 (240)
                      .+|.+||-+| +| .|..+..+++..+.++++++- ++-.+.+++..    .. .++..+.  ...........||.| +
T Consensus        59 ~~G~rVLdiG-~G-~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a--~~~~~~~~~~~FD~i~~  134 (236)
T 3orh_A           59 SKGGRVLEVG-FG-MAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLW--EDVAPTLPDGHFDGILY  134 (236)
T ss_dssp             TTCEEEEEEC-CT-TSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCH--HHHGGGSCTTCEEEEEE
T ss_pred             cCCCeEEEEC-CC-ccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehH--HhhcccccccCCceEEE
Confidence            5889999999 44 677888888887788888884 46666665433    21 1221110  111223344679888 5


Q ss_pred             eCCCCC-----------CccccccCCCCCcEEEEeC
Q 045248          138 HCATGI-----------PWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       138 d~~g~~-----------~~~~~~~~l~~~G~iv~~g  162 (240)
                      |++...           .+..+.+.|+|||+++.+.
T Consensus       135 D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          135 DTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             CCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             eeeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence            665421           1456778999999998764

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=95.94  E-value=0.0094  Score=47.75  Aligned_cols=88  Identities=7%  Similarity=0.017  Sum_probs=64.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC--
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG--  142 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~--  142 (240)
                      .|++|.|+| .|.+|...++.++.+|++|++..+. .+.+..++.|...    .+. ...+     ...|+|+-++..  
T Consensus       144 ~g~tvGIIG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~----~~l-~ell-----~~aDvV~l~~P~t~  212 (330)
T 4e5n_A          144 DNATVGFLG-MGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQ----VAC-SELF-----ASSDFILLALPLNA  212 (330)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEE----CCH-HHHH-----HHCSEEEECCCCST
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCcee----CCH-HHHH-----hhCCEEEEcCCCCH
Confidence            688999999 9999999999999999999999875 4666666777521    111 1111     246889888863  


Q ss_pred             CC---c-cccccCCCCCcEEEEeCCC
Q 045248          143 IP---W-STFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       143 ~~---~-~~~~~~l~~~G~iv~~g~~  164 (240)
                      .+   + ...+..+++++.++.++..
T Consensus       213 ~t~~li~~~~l~~mk~gailIN~arg  238 (330)
T 4e5n_A          213 DTLHLVNAELLALVRPGALLVNPCRG  238 (330)
T ss_dssp             TTTTCBCHHHHTTSCTTEEEEECSCG
T ss_pred             HHHHHhCHHHHhhCCCCcEEEECCCC
Confidence            11   2 3567788999999988743

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=95.94  E-value=0.0032  Score=50.45  Aligned_cols=75  Identities=15%  Similarity=0.052  Sum_probs=45.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCC-------CEEEEEeCc-ccHHHHHhcCCC-EEEeCCCCccccccCCCCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGN-------THVTASCGA-RNIEFVKSLGAD-EVLDYKTPDGAALKSPSGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g-------~~v~~~~~~-~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~~~~d~v  136 (240)
                      .+.+|||+||+|.+|..+++.+...|       ++|+++++. .+...  ..+.. ..+..+-.+...+...-..++|+|
T Consensus        13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~v   90 (342)
T 2hrz_A           13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA--GFSGAVDARAADLSAPGEAEKLVEARPDVI   90 (342)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT--TCCSEEEEEECCTTSTTHHHHHHHTCCSEE
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc--ccCCceeEEEcCCCCHHHHHHHHhcCCCEE
Confidence            56789999999999999998888889       789998864 22111  11111 122111111111111111479999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      |.++|.
T Consensus        91 ih~A~~   96 (342)
T 2hrz_A           91 FHLAAI   96 (342)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            999984

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=95.94  E-value=0.0083  Score=44.50  Aligned_cols=93  Identities=26%  Similarity=0.334  Sum_probs=60.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC-
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG-  142 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~-  142 (240)
                      +++.+||-+| +| .|..+..+++. |.+|++++. +...+.+++.+...+ .....+....  .....||+|+-...- 
T Consensus        45 ~~~~~vLdiG-~G-~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~d~~~~--~~~~~~D~v~~~~~l~  118 (218)
T 3ou2_A           45 NIRGDVLELA-SG-TGYWTRHLSGL-ADRVTALDGSAEMIAEAGRHGLDNV-EFRQQDLFDW--TPDRQWDAVFFAHWLA  118 (218)
T ss_dssp             TSCSEEEEES-CT-TSHHHHHHHHH-SSEEEEEESCHHHHHHHGGGCCTTE-EEEECCTTSC--CCSSCEEEEEEESCGG
T ss_pred             CCCCeEEEEC-CC-CCHHHHHHHhc-CCeEEEEeCCHHHHHHHHhcCCCCe-EEEecccccC--CCCCceeEEEEechhh
Confidence            6788999998 44 37777777777 889999995 467777777553221 1111111111  345679999865431 


Q ss_pred             --------CCccccccCCCCCcEEEEeCC
Q 045248          143 --------IPWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       143 --------~~~~~~~~~l~~~G~iv~~g~  163 (240)
                              ..+..+.+.|+++|+++....
T Consensus       119 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  147 (218)
T 3ou2_A          119 HVPDDRFEAFWESVRSAVAPGGVVEFVDV  147 (218)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence                    115566778999999887754

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=95.92  E-value=0.017  Score=41.66  Aligned_cols=99  Identities=20%  Similarity=0.149  Sum_probs=61.4

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH----hcCC-CEEEeCCCCcc-ccccC
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK----SLGA-DEVLDYKTPDG-AALKS  127 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~----~~g~-~~v~~~~~~~~-~~~~~  127 (240)
                      ....+     .++.+||-.| +|. |..+..+++.. .+|++++.+ +..+.++    ..+. ..+ .....+. .....
T Consensus        27 ~~~~~-----~~~~~vldiG-~G~-G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~-~~~~~d~~~~~~~   97 (192)
T 1l3i_A           27 CLAEP-----GKNDVAVDVG-CGT-GGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNV-TLMEGDAPEALCK   97 (192)
T ss_dssp             HHHCC-----CTTCEEEEES-CTT-SHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTE-EEEESCHHHHHTT
T ss_pred             HhcCC-----CCCCEEEEEC-CCC-CHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcce-EEEecCHHHhccc
Confidence            44556     7889999999 565 88888888766 899999954 5555554    3443 111 1111111 11111


Q ss_pred             CCCCcccEEEeCCCCC----CccccccCCCCCcEEEEeCCC
Q 045248          128 PSGRKYDAVIHCATGI----PWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       128 ~~~~~~d~v~d~~g~~----~~~~~~~~l~~~G~iv~~g~~  164 (240)
                        ...+|+|+-.....    .+..+.+.|+++|+++.....
T Consensus        98 --~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~~  136 (192)
T 1l3i_A           98 --IPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAIL  136 (192)
T ss_dssp             --SCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred             --CCCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence              13799999664422    266677889999998876543

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=95.92  E-value=0.0086  Score=46.25  Aligned_cols=99  Identities=18%  Similarity=0.179  Sum_probs=62.4

Q ss_pred             HHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH----hcCCC---EEEeCCCCcccc
Q 045248           53 LTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK----SLGAD---EVLDYKTPDGAA  124 (240)
Q Consensus        53 l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~----~~g~~---~v~~~~~~~~~~  124 (240)
                      +.+..++     .++.+||-+| +| .|..+..+++..+.+|++++.+ ...+.++    ..|..   .++..+.   ..
T Consensus        53 l~~~~~~-----~~~~~vLDiG-cG-~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~  122 (273)
T 3bus_A           53 MIALLDV-----RSGDRVLDVG-CG-IGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADA---MD  122 (273)
T ss_dssp             HHHHSCC-----CTTCEEEEES-CT-TSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TS
T ss_pred             HHHhcCC-----CCCCEEEEeC-CC-CCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcc---cc
Confidence            3356666     7899999998 44 4778888888889999999954 5555553    33421   2221111   11


Q ss_pred             ccCCCCCcccEEEeCCC-----C--CCccccccCCCCCcEEEEeC
Q 045248          125 LKSPSGRKYDAVIHCAT-----G--IPWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       125 ~~~~~~~~~d~v~d~~g-----~--~~~~~~~~~l~~~G~iv~~g  162 (240)
                      . ......||+|+-.-.     .  ..+..+.+.|+|+|+++...
T Consensus       123 ~-~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~  166 (273)
T 3bus_A          123 L-PFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIAD  166 (273)
T ss_dssp             C-CSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             C-CCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            1 112357999974322     1  12667888999999988664

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=95.91  E-value=0.048  Score=46.20  Aligned_cols=75  Identities=21%  Similarity=0.304  Sum_probs=48.6

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc----ccH----HHHHhcCCCEEE-e--CCCCc--cccccC-CCCCc
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA----RNI----EFVKSLGADEVL-D--YKTPD--GAALKS-PSGRK  132 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~----~~~----~~~~~~g~~~v~-~--~~~~~--~~~~~~-~~~~~  132 (240)
                      +++||+||+|++|..+++.+...|+ +|+.+.+.    +..    +.+++.|....+ .  ..+..  ...+.. ....+
T Consensus       240 ~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~g~  319 (496)
T 3mje_A          240 GSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPEDAP  319 (496)
T ss_dssp             SEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTTSC
T ss_pred             CEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHhCC
Confidence            8999999999999999988889999 78887753    122    334556754332 2  22221  111211 11247


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|.+|.+.|.
T Consensus       320 ld~vVh~AGv  329 (496)
T 3mje_A          320 LTAVFHSAGV  329 (496)
T ss_dssp             EEEEEECCCC
T ss_pred             CeEEEECCcc
Confidence            9999999984

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=95.91  E-value=0.034  Score=45.00  Aligned_cols=131  Identities=18%  Similarity=0.186  Sum_probs=76.8

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhC-CCEEEEEeC-c-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLG-NTHVTASCG-A-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP  144 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~-g~~v~~~~~-~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~  144 (240)
                      -+|.|+| +|.+|...+..++.. ++++++++. + ++.+.++++|.. +  +.+. ...+   ....+|+|+-|+....
T Consensus         6 ~~vgiiG-~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~-~--~~~~-~~ll---~~~~~D~V~i~tp~~~   77 (359)
T 3e18_A            6 YQLVIVG-YGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLK-I--YESY-EAVL---ADEKVDAVLIATPNDS   77 (359)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCC-B--CSCH-HHHH---HCTTCCEEEECSCGGG
T ss_pred             CcEEEEC-cCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCc-e--eCCH-HHHh---cCCCCCEEEEcCCcHH
Confidence            5799999 899999888877766 678888774 3 566667777753 2  2211 1112   2246999999998755


Q ss_pred             -ccccccCCCCCcEEEEeCCCch---HHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCce
Q 045248          145 -WSTFEPNLGTNGKVIDITPGPS---AMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKL  207 (240)
Q Consensus       145 -~~~~~~~l~~~G~iv~~g~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i  207 (240)
                       ...+..+++.| +-|.+..+-.   ............++..+...+.......++.+.+++++|.+
T Consensus        78 h~~~~~~al~aG-khVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~i  143 (359)
T 3e18_A           78 HKELAISALEAG-KHVVCEKPVTMTSEDLLAIMDVAKRVNKHFMVHQNRRWDEDFLIIKEMFEQKTI  143 (359)
T ss_dssp             HHHHHHHHHHTT-CEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHCC-CCEEeeCCCcCCHHHHHHHHHHHHHhCCeEEEEeeeccCHHHHHHHHHHHcCCC
Confidence             66677777765 4444543211   11111112222223333222222334567888888888765

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=95.91  E-value=0.0057  Score=48.30  Aligned_cols=35  Identities=20%  Similarity=0.190  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .+.+|||+||+|.+|..+++.+...|.+|+++++.
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~   40 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGEEVTVLDDL   40 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecC
Confidence            46899999999999999999999899999999864

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=95.90  E-value=0.01  Score=45.63  Aligned_cols=39  Identities=15%  Similarity=0.091  Sum_probs=32.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHh---CCCEEEEEeCc-ccHH
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKL---GNTHVTASCGA-RNIE  104 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~---~g~~v~~~~~~-~~~~  104 (240)
                      .++++||+||+|++|.++++.+..   .|++|+.++++ ++.+
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~   47 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLR   47 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHH
Confidence            578999999999999998887776   89999999975 4433

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=95.90  E-value=0.044  Score=46.34  Aligned_cols=78  Identities=23%  Similarity=0.288  Sum_probs=50.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-c---cH----HHHHhcCCCE-EE--eCCCCc--cccccC-CC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-R---NI----EFVKSLGADE-VL--DYKTPD--GAALKS-PS  129 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~---~~----~~~~~~g~~~-v~--~~~~~~--~~~~~~-~~  129 (240)
                      .++.++||+||+|++|..+++.+...|+ +|+.+.++ .   +.    +.+++.|... ++  |..+..  ...+.. ..
T Consensus       224 ~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i~~  303 (486)
T 2fr1_A          224 KPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGD  303 (486)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHHHh
Confidence            5789999999999999999988888898 68888864 2   22    2334556532 22  222221  111111 12


Q ss_pred             CCcccEEEeCCCC
Q 045248          130 GRKYDAVIHCATG  142 (240)
Q Consensus       130 ~~~~d~v~d~~g~  142 (240)
                      ...+|.||.+.|.
T Consensus       304 ~g~ld~VIh~AG~  316 (486)
T 2fr1_A          304 DVPLSAVFHAAAT  316 (486)
T ss_dssp             TSCEEEEEECCCC
T ss_pred             cCCCcEEEECCcc
Confidence            2578999999983

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=95.89  E-value=0.029  Score=46.39  Aligned_cols=35  Identities=20%  Similarity=0.148  Sum_probs=29.9

Q ss_pred             CCCCeEEEEcCCchHHHH--HHHHHHhCCCEEEEEeC
Q 045248           65 GQQKNILVTAASGGVGHY--AVQLAKLGNTHVTASCG   99 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~--~~~~a~~~g~~v~~~~~   99 (240)
                      ..++++||+||++|+|.+  ....+...|++|+.+.+
T Consensus        58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r   94 (418)
T 4eue_A           58 RGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSY   94 (418)
T ss_dssp             CCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEEC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEec
Confidence            578999999999999998  66666677999998885

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=95.89  E-value=0.032  Score=47.54  Aligned_cols=64  Identities=19%  Similarity=0.157  Sum_probs=45.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      +.+|||+||+|.+|..+++.+...|.+|+++++. .+.+       ....+..+.   ....  -.++|+||.+++.
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~-------~v~~d~~~~---~~~~--l~~~D~Vih~A~~  211 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPG-------KRFWDPLNP---ASDL--LDGADVLVHLAGE  211 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTT-------CEECCTTSC---CTTT--TTTCSEEEECCCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCcc-------ceeecccch---hHHh--cCCCCEEEECCCC
Confidence            6799999999999999999999999999999975 3321       111121111   1111  1479999999984

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=95.89  E-value=0.015  Score=50.54  Aligned_cols=77  Identities=18%  Similarity=0.192  Sum_probs=50.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc----------ccHH----HHHhcCCCEEEeCCCCc--cccccC--
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA----------RNIE----FVKSLGADEVLDYKTPD--GAALKS--  127 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~----------~~~~----~~~~~g~~~v~~~~~~~--~~~~~~--  127 (240)
                      .++.++|+||++|+|.+.++.+...|++|++.++.          ++.+    .+++.|...+.+..+..  ...++.  
T Consensus         7 ~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~~d~~d~~~~~~~v~~~~   86 (604)
T 2et6_A            7 KDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYNNVLDGDKIVETAV   86 (604)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTTCEEEEECCCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHH
Confidence            57899999999999999999999999999988632          2222    22344544445544432  111111  


Q ss_pred             CCCCcccEEEeCCCC
Q 045248          128 PSGRKYDAVIHCATG  142 (240)
Q Consensus       128 ~~~~~~d~v~d~~g~  142 (240)
                      ..-+++|+++++.|-
T Consensus        87 ~~~G~iDiLVnNAGi  101 (604)
T 2et6_A           87 KNFGTVHVIINNAGI  101 (604)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHcCCCCEEEECCCC
Confidence            112469999999983

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=95.87  E-value=0.025  Score=45.61  Aligned_cols=75  Identities=16%  Similarity=0.162  Sum_probs=47.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccH--HHHHhcCCCEEEeCC-CCccccccCCCCCcccEEEeCCCC
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNI--EFVKSLGADEVLDYK-TPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~--~~~~~~g~~~v~~~~-~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      +.+|||+||+|.+|..+++.+...|.+|++++++ ++.  +.+.+.....++..+ -.+...+... -.++|+||.+.+.
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~-~~~~d~Vi~~a~~   83 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTL-FEGAHLAFINTTS   83 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHH-HTTCSEEEECCCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHH-HhcCCEEEEcCCC
Confidence            5789999999999999998888889999999875 443  333333222233222 1121111111 1358999987764

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=95.86  E-value=0.014  Score=43.86  Aligned_cols=70  Identities=16%  Similarity=0.158  Sum_probs=43.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH----hcCC-CEEEeCCCCccccccCCCCCcccEEEe
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK----SLGA-DEVLDYKTPDGAALKSPSGRKYDAVIH  138 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~----~~g~-~~v~~~~~~~~~~~~~~~~~~~d~v~d  138 (240)
                      +++.+||=.| +|..|..++.+++..+.+|++++.+ +..+.++    ..|. ..++..+..   .........||+|+-
T Consensus        54 ~~~~~vLDlG-~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~---~~~~~~~~~fD~I~~  129 (230)
T 3evz_A           54 RGGEVALEIG-TGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGG---IIKGVVEGTFDVIFS  129 (230)
T ss_dssp             CSSCEEEEEC-CTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSC---SSTTTCCSCEEEEEE
T ss_pred             CCCCEEEEcC-CCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCch---hhhhcccCceeEEEE
Confidence            6889999998 6656777777777667899999954 5555553    3443 233322211   111122367999984

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=95.86  E-value=0.018  Score=48.86  Aligned_cols=35  Identities=23%  Similarity=0.235  Sum_probs=31.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      +..+|||+||+|.+|..+++.+...|.+|+++++.
T Consensus       149 ~~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~  183 (508)
T 4f6l_B          149 PLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRA  183 (508)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEES
T ss_pred             CCCeEEEECCccchHHHHHHHHHhcCCEEEEEECC
Confidence            45789999999999999999888888999999975

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=95.85  E-value=0.03  Score=45.18  Aligned_cols=90  Identities=16%  Similarity=0.137  Sum_probs=62.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHH-hCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAK-LGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~-~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      -.|++|.|+| .|.+|...++.++ .+|.+|++.++. ++.+.+.++|...+   .+. ...+     ...|+|+.++..
T Consensus       161 l~g~~vgIIG-~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~---~~l-~ell-----~~aDvVil~vp~  230 (348)
T 2w2k_A          161 PRGHVLGAVG-LGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERV---DSL-EELA-----RRSDCVSVSVPY  230 (348)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEEC---SSH-HHHH-----HHCSEEEECCCC
T ss_pred             CCCCEEEEEE-ECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEe---CCH-HHHh-----ccCCEEEEeCCC
Confidence            3688999999 9999999999999 999999998865 56666666665321   111 1111     247899998874


Q ss_pred             CC-----c-cccccCCCCCcEEEEeCCC
Q 045248          143 IP-----W-STFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       143 ~~-----~-~~~~~~l~~~G~iv~~g~~  164 (240)
                      ..     + ...+..++++..++.++..
T Consensus       231 ~~~t~~li~~~~l~~mk~gailin~srg  258 (348)
T 2w2k_A          231 MKLTHHLIDEAFFAAMKPGSRIVNTARG  258 (348)
T ss_dssp             SGGGTTCBCHHHHHHSCTTEEEEECSCG
T ss_pred             ChHHHHHhhHHHHhcCCCCCEEEECCCC
Confidence            21     2 1345667888888777643

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=95.83  E-value=0.021  Score=43.53  Aligned_cols=92  Identities=13%  Similarity=0.049  Sum_probs=59.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH----hcCCC---EEEeCCCCccccccCCCCCcccEE
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK----SLGAD---EVLDYKTPDGAALKSPSGRKYDAV  136 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~----~~g~~---~v~~~~~~~~~~~~~~~~~~~d~v  136 (240)
                      +++.+||-+| +| .|..+..+++..+.+|++++.+ ...+.++    +.|..   .++..+-   .... .....||+|
T Consensus        45 ~~~~~vLDiG-~G-~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~-~~~~~fD~v  118 (257)
T 3f4k_A           45 TDDAKIADIG-CG-TGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSM---DNLP-FQNEELDLI  118 (257)
T ss_dssp             CTTCEEEEET-CT-TSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TSCS-SCTTCEEEE
T ss_pred             CCCCeEEEeC-CC-CCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh---hhCC-CCCCCEEEE
Confidence            7888999998 55 5888889999888899999954 5555543    44432   1221111   1111 124679999


Q ss_pred             EeCCCC------CCccccccCCCCCcEEEEeC
Q 045248          137 IHCATG------IPWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       137 ~d~~g~------~~~~~~~~~l~~~G~iv~~g  162 (240)
                      +-.-.-      ..+..+.+.|+|+|+++...
T Consensus       119 ~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~  150 (257)
T 3f4k_A          119 WSEGAIYNIGFERGMNEWSKYLKKGGFIAVSE  150 (257)
T ss_dssp             EEESCSCCCCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             EecChHhhcCHHHHHHHHHHHcCCCcEEEEEE
Confidence            754321      12677888999999988764

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=95.82  E-value=0.018  Score=48.53  Aligned_cols=36  Identities=22%  Similarity=0.277  Sum_probs=31.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhC---CCEEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLG---NTHVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~---g~~v~~~~~~  100 (240)
                      ..+++|||+||+|.+|..+++.+...   |.+|+++++.
T Consensus        71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~  109 (478)
T 4dqv_A           71 PELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRA  109 (478)
T ss_dssp             SCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence            46889999999999999988777666   8999999975

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=95.82  E-value=0.024  Score=42.31  Aligned_cols=92  Identities=12%  Similarity=0.046  Sum_probs=59.1

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCCc-
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPW-  145 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~-  145 (240)
                      +|+|+| .|.+|..+++.+...|.+|++++++ ++.+.+ +..|.. ++..+..+...++..+-.++|+++-+++.... 
T Consensus         2 ~iiIiG-~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~-~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n   79 (218)
T 3l4b_C            2 KVIIIG-GETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKAT-IIHGDGSHKEILRDAEVSKNDVVVILTPRDEVN   79 (218)
T ss_dssp             CEEEEC-CHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSE-EEESCTTSHHHHHHHTCCTTCEEEECCSCHHHH
T ss_pred             EEEEEC-CCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCe-EEEcCCCCHHHHHhcCcccCCEEEEecCCcHHH
Confidence            589999 7999999999999999999999975 666655 345653 44333333233333333578999999987432 


Q ss_pred             ---cccccCCCCCcEEEEeC
Q 045248          146 ---STFEPNLGTNGKVIDIT  162 (240)
Q Consensus       146 ---~~~~~~l~~~G~iv~~g  162 (240)
                         ....+.+.+..+++..-
T Consensus        80 ~~~~~~a~~~~~~~~iia~~   99 (218)
T 3l4b_C           80 LFIAQLVMKDFGVKRVVSLV   99 (218)
T ss_dssp             HHHHHHHHHTSCCCEEEECC
T ss_pred             HHHHHHHHHHcCCCeEEEEE
Confidence               22223334445555443

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=95.81  E-value=0.031  Score=44.93  Aligned_cols=132  Identities=14%  Similarity=0.067  Sum_probs=77.9

Q ss_pred             CeEEEEcCCchHHHH-HHHHHHhC-CCEEEEEeC-c-cc-HHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           68 KNILVTAASGGVGHY-AVQLAKLG-NTHVTASCG-A-RN-IEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~-~~~~a~~~-g~~v~~~~~-~-~~-~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      =++.|+| +|.+|.. .+...+.. +++++++++ + ++ .+.++++|...++..-   ...+   ....+|+|+-++..
T Consensus        24 irigiIG-~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~---~ell---~~~~iDaV~I~tP~   96 (350)
T 4had_A           24 LRFGIIS-TAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSY---EEML---ASDVIDAVYIPLPT   96 (350)
T ss_dssp             EEEEEES-CCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSH---HHHH---HCSSCSEEEECSCG
T ss_pred             cEEEEEc-ChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCH---HHHh---cCCCCCEEEEeCCC
Confidence            3799999 9999975 45555544 679998884 3 43 4556788876665311   1112   23569999999987


Q ss_pred             CC-ccccccCCCCCcEEEEeCCCch---HHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCce
Q 045248          143 IP-WSTFEPNLGTNGKVIDITPGPS---AMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKL  207 (240)
Q Consensus       143 ~~-~~~~~~~l~~~G~iv~~g~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i  207 (240)
                      .. ...+..+++. |+=|++..+-.   ............++..+...+.......+..+.+++++|.|
T Consensus        97 ~~H~~~~~~al~a-GkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~~~k~~i~~G~i  164 (350)
T 4had_A           97 SQHIEWSIKAADA-GKHVVCEKPLALKAGDIDAVIAARDRNKVVVTEAYMITYSPVWQKVRSLIDEGAI  164 (350)
T ss_dssp             GGHHHHHHHHHHT-TCEEEECSCCCSSGGGGHHHHHHHHHHTCCEEECCGGGGSHHHHHHHHHHHTTTT
T ss_pred             chhHHHHHHHHhc-CCEEEEeCCcccchhhHHHHHHHHHHcCCceeEeeeeecCHHHHHhhHhhhcCCC
Confidence            55 6667777765 56677774321   11111112122223333222222334567888899998865

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.80  E-value=0.015  Score=45.31  Aligned_cols=69  Identities=16%  Similarity=0.203  Sum_probs=44.8

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCC
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCAT  141 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g  141 (240)
                      +.+|||+| +|.+|..+++.+...|.+|+++.+. ++.    ..+.. .+..+-.+...+.....+++|+||.+++
T Consensus         3 ~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~~----~~~~~-~~~~Dl~d~~~~~~~~~~~~d~vih~a~   72 (286)
T 3gpi_A            3 LSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQPM----PAGVQ-TLIADVTRPDTLASIVHLRPEILVYCVA   72 (286)
T ss_dssp             CCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSCC----CTTCC-EEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcccc----ccCCc-eEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence            46899999 6999999999999999999999975 331    12232 2222211222222222235999999986

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=95.80  E-value=0.01  Score=47.21  Aligned_cols=73  Identities=21%  Similarity=0.211  Sum_probs=45.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcC-CCEEEeCCCCccccc-cCCCCCcccEEEeCCCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLG-ADEVLDYKTPDGAAL-KSPSGRKYDAVIHCATG  142 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g-~~~v~~~~~~~~~~~-~~~~~~~~d~v~d~~g~  142 (240)
                      .+|||+||+|.+|..+++.+...|.+|+++++. ....  +.+. ...++..+-.+...+ +.....++|+||.+++.
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a~~   77 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHE--DAITEGAKFYNGDLRDKAFLRDVFTQENIEAVMHFAAD   77 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCG--GGSCTTSEEEECCTTCHHHHHHHHHHSCEEEEEECCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCch--hhcCCCcEEEECCCCCHHHHHHHHhhcCCCEEEECCcc
Confidence            479999999999999999999899999999864 2211  1221 112332221121111 11111379999999984

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=95.79  E-value=0.0078  Score=48.10  Aligned_cols=72  Identities=13%  Similarity=0.036  Sum_probs=44.0

Q ss_pred             eEEEEcCCchHHHHHHHHHHhC-CCEEEEEeCc-ccHHHHHhcCCCEEE--eCCCCccccccCCCCCcccEEEeCCCC
Q 045248           69 NILVTAASGGVGHYAVQLAKLG-NTHVTASCGA-RNIEFVKSLGADEVL--DYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~-g~~v~~~~~~-~~~~~~~~~g~~~v~--~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      +|||+||+|.+|..+++.+... |++|+++++. ++.+.+.+.....++  |..+.. ..++..- .++|+||.++|.
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~-~~~d~vih~A~~   77 (345)
T 2bll_A            2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHS-EWIEYHV-KKCDVVLPLVAI   77 (345)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCS-HHHHHHH-HHCSEEEECBCC
T ss_pred             eEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhcCCCeEEEeccccCcH-HHHHhhc-cCCCEEEEcccc
Confidence            6999999999999999888877 8999999974 333222111111222  222211 1111100 268999999874

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=95.78  E-value=0.0065  Score=47.84  Aligned_cols=72  Identities=19%  Similarity=0.086  Sum_probs=44.6

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhC--CCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccc-cCCCCCcccEEEeCCCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLG--NTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAAL-KSPSGRKYDAVIHCATG  142 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~--g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~-~~~~~~~~d~v~d~~g~  142 (240)
                      .+|||+||+|.+|..+++.+...  |.+|+++++. .+.+...  +.. .+..+-.+...+ +.....++|+||.+++.
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~--~~~-~~~~D~~d~~~~~~~~~~~~~d~vih~a~~   78 (312)
T 2yy7_A            3 PKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVN--SGP-FEVVNALDFNQIEHLVEVHKITDIYLMAAL   78 (312)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCHHHH--SSC-EEECCTTCHHHHHHHHHHTTCCEEEECCCC
T ss_pred             ceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccccccC--CCc-eEEecCCCHHHHHHHHhhcCCCEEEECCcc
Confidence            57999999999999998877776  7899999864 3322222  222 222221121111 11111279999999985

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=95.77  E-value=0.005  Score=50.11  Aligned_cols=33  Identities=21%  Similarity=0.191  Sum_probs=30.1

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ++|||+||+|.+|..+++.+...|++|+++++.
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~   61 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRR   61 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecC
Confidence            589999999999999999998899999999864

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=95.76  E-value=0.12  Score=41.47  Aligned_cols=131  Identities=9%  Similarity=0.077  Sum_probs=74.7

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhC-CCEEEEEeC-c-ccH-HHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLG-NTHVTASCG-A-RNI-EFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~-g~~v~~~~~-~-~~~-~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      -+|.|+| +|.+|...+..++.. ++++++++. + ++. +.++++|. .++.  +. ...+   ....+|+|+.++...
T Consensus         5 ~rvgiiG-~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~-~~~~--~~-~~~l---~~~~~D~V~i~tp~~   76 (344)
T 3euw_A            5 LRIALFG-AGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGA-EAVA--SP-DEVF---ARDDIDGIVIGSPTS   76 (344)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTC-EEES--SH-HHHT---TCSCCCEEEECSCGG
T ss_pred             eEEEEEC-CcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCC-ceeC--CH-HHHh---cCCCCCEEEEeCCch
Confidence            4799999 899999888777765 668887764 3 443 44567773 3332  11 1112   234699999999875


Q ss_pred             C-ccccccCCCCCcEEEEeCCCch---HHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCce
Q 045248          144 P-WSTFEPNLGTNGKVIDITPGPS---AMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKL  207 (240)
Q Consensus       144 ~-~~~~~~~l~~~G~iv~~g~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i  207 (240)
                      . ...+..+++.|-. |.+..+-.   .............+..+...+.......+..+.+++++|.+
T Consensus        77 ~h~~~~~~al~~gk~-v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~i  143 (344)
T 3euw_A           77 THVDLITRAVERGIP-ALCEKPIDLDIEMVRACKEKIGDGASKVMLGFNRRFDPSFAAINARVANQEI  143 (344)
T ss_dssp             GHHHHHHHHHHTTCC-EEECSCSCSCHHHHHHHHHHHGGGGGGEEECCGGGGCHHHHHHHHHHHTTTT
T ss_pred             hhHHHHHHHHHcCCc-EEEECCCCCCHHHHHHHHHHHHhcCCeEEecchhhcCHHHHHHHHHHhcCCC
Confidence            5 5566666666544 44543211   11111122222233333222222334567888899998764

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=95.72  E-value=0.009  Score=45.92  Aligned_cols=94  Identities=10%  Similarity=-0.076  Sum_probs=54.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHh-cCCCE------------E-------EeCCCCccc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKS-LGADE------------V-------LDYKTPDGA  123 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~-~g~~~------------v-------~~~~~~~~~  123 (240)
                      .++.+||..| +| .|..+..+++. |++|++++- +.-.+.+++ .+...            +       +.+...+..
T Consensus        67 ~~~~~vLD~G-CG-~G~~~~~La~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~  143 (252)
T 2gb4_A           67 QSGLRVFFPL-CG-KAIEMKWFADR-GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIF  143 (252)
T ss_dssp             CCSCEEEETT-CT-TCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTT
T ss_pred             CCCCeEEEeC-CC-CcHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccc
Confidence            5788999998 54 46666677765 999999995 466666643 32100            0       111011111


Q ss_pred             cccCCCCCcccEEEeCCCCC---------CccccccCCCCCcEEEEe
Q 045248          124 ALKSPSGRKYDAVIHCATGI---------PWSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       124 ~~~~~~~~~~d~v~d~~g~~---------~~~~~~~~l~~~G~iv~~  161 (240)
                      .........||+|++...-.         .+..+.+.|+|||+++.+
T Consensus       144 ~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~  190 (252)
T 2gb4_A          144 DLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA  190 (252)
T ss_dssp             TGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            11111125799999854311         144567889999998644

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=95.71  E-value=0.023  Score=43.21  Aligned_cols=71  Identities=23%  Similarity=0.190  Sum_probs=45.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHh-CCCEEEEEeCccc--HHHHHhcCCCEEE--eCCCCc--cccccCCCCCcccEEEe
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKL-GNTHVTASCGARN--IEFVKSLGADEVL--DYKTPD--GAALKSPSGRKYDAVIH  138 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~-~g~~v~~~~~~~~--~~~~~~~g~~~v~--~~~~~~--~~~~~~~~~~~~d~v~d  138 (240)
                      .++++||+||+|++|.++++.+.. .|++|+.+.+...  .+.      ...+  |-.+.+  ...++.....++|+++.
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~~~~------~~~~~~Dv~~~~~v~~~~~~~~~~~id~lv~   76 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSAEN------LKFIKADLTKQQDITNVLDIIKNVSFDGIFL   76 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCCCTT------EEEEECCTTCHHHHHHHHHHTTTCCEEEEEE
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEecccccccccc------ceEEecCcCCHHHHHHHHHHHHhCCCCEEEE
Confidence            578899999999999998876666 7889888886422  111      1222  222222  11122222347999999


Q ss_pred             CCCC
Q 045248          139 CATG  142 (240)
Q Consensus       139 ~~g~  142 (240)
                      ++|.
T Consensus        77 nAg~   80 (244)
T 4e4y_A           77 NAGI   80 (244)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            9984

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=95.71  E-value=0.014  Score=44.58  Aligned_cols=73  Identities=16%  Similarity=0.157  Sum_probs=47.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCc-c-ccccC--CCCCcccEEEeCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPD-G-AALKS--PSGRKYDAVIHCA  140 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~-~-~~~~~--~~~~~~d~v~d~~  140 (240)
                      .++++||+||+|++|..+++.+...|++|+++.++ ++.+.+.  +  ...|..+.+ . ..++.  ....++|+++.+.
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~--~--~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~A   89 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLF--G--VEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNA   89 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSE--E--EECCTTCHHHHHHHHHHHHHHHSSCSEEEEEC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHhc--C--eeccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            57899999999999999999999999999999864 3322111  1  122333322 1 11111  0114689999999


Q ss_pred             CC
Q 045248          141 TG  142 (240)
Q Consensus       141 g~  142 (240)
                      |.
T Consensus        90 g~   91 (247)
T 1uzm_A           90 GL   91 (247)
T ss_dssp             SC
T ss_pred             CC
Confidence            84

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=95.71  E-value=0.0049  Score=49.70  Aligned_cols=74  Identities=12%  Similarity=0.060  Sum_probs=45.4

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCC-----CEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccc-cCCCCC-cccEEEe
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGN-----THVTASCGA-RNIEFVKSLGADEVLDYKTPDGAAL-KSPSGR-KYDAVIH  138 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g-----~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~-~~~~~~-~~d~v~d  138 (240)
                      +.+|||+||+|.+|..+++.+...|     .+|+++++. .+.. ....+. .++..+-.+...+ +...+. .+|+||.
T Consensus         1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~-~~~~~~-~~~~~Dl~d~~~~~~~~~~~~~~d~vih   78 (364)
T 2v6g_A            1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW-HEDNPI-NYVQCDISDPDDSQAKLSPLTDVTHVFY   78 (364)
T ss_dssp             CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC-CCSSCC-EEEECCTTSHHHHHHHHTTCTTCCEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc-cccCce-EEEEeecCCHHHHHHHHhcCCCCCEEEE
Confidence            3579999999999999999988889     899999964 3221 111122 2232221121111 111222 3999999


Q ss_pred             CCCC
Q 045248          139 CATG  142 (240)
Q Consensus       139 ~~g~  142 (240)
                      +++.
T Consensus        79 ~a~~   82 (364)
T 2v6g_A           79 VTWA   82 (364)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9874

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=95.71  E-value=0.045  Score=44.08  Aligned_cols=131  Identities=8%  Similarity=0.040  Sum_probs=73.1

Q ss_pred             eEEEEcCCchHHH-HHHHHHHhC-CCEEEEEeCc-ccHHHHHhcCC--CEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           69 NILVTAASGGVGH-YAVQLAKLG-NTHVTASCGA-RNIEFVKSLGA--DEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        69 ~vlV~G~~g~vG~-~~~~~a~~~-g~~v~~~~~~-~~~~~~~~~g~--~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      +|.|+| +|.+|. ..+..++.. +++++++++. ...+.+++++.  ..++  .+.+ ..+   ....+|+|+-++...
T Consensus         4 rvgiiG-~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~a~~~~~~~~~~~--~~~~-~ll---~~~~~D~V~i~tp~~   76 (349)
T 3i23_A            4 KMGFIG-FGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFT--ADLN-ELL---TDPEIELITICTPAH   76 (349)
T ss_dssp             EEEEEC-CSHHHHHTTHHHHTTCTTEEEEEEECTTCCHHHHHHHHTTTCEEE--SCTH-HHH---SCTTCCEEEECSCGG
T ss_pred             EEEEEc-cCHHHHHHHHHHHhhCCCeEEEEEECCCHHHHHHHhhCCCCCeEE--CCHH-HHh---cCCCCCEEEEeCCcH
Confidence            689999 899997 677766655 6799888854 44555555432  2333  2211 112   234699999999875


Q ss_pred             C-ccccccCCCCCcEEEEeCCCch---HHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCce
Q 045248          144 P-WSTFEPNLGTNGKVIDITPGPS---AMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKL  207 (240)
Q Consensus       144 ~-~~~~~~~l~~~G~iv~~g~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i  207 (240)
                      . ...+..+++.| +-|.+..+-.   ............++..+...+.......++.+.+++++|.+
T Consensus        77 ~h~~~~~~al~aG-k~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~g~i  143 (349)
T 3i23_A           77 THYDLAKQAILAG-KSVIVEKPFCDTLEHAEELFALGQEKGVVVMPYQNRRFDGDYLAMKQVVEQGFL  143 (349)
T ss_dssp             GHHHHHHHHHHTT-CEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHcC-CEEEEECCCcCCHHHHHHHHHHHHHcCCeEEEEecccCCHHHHHHHHHHhcCCC
Confidence            5 66667777755 5555664321   11111112222233333222212223457788888888764

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=95.70  E-value=0.049  Score=41.99  Aligned_cols=86  Identities=13%  Similarity=0.127  Sum_probs=58.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccH-HHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNI-EFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~-~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      .+ +++|+| +|++|.+.++.+...|++|++..++ ++. +.++++|..  +  .+     ..+.  ...|+|+.+++..
T Consensus       116 ~~-~v~iiG-~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~--~--~~-----~~~~--~~~Divi~~tp~~  182 (263)
T 2d5c_A          116 KG-PALVLG-AGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR--A--VP-----LEKA--REARLLVNATRVG  182 (263)
T ss_dssp             CS-CEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE--E--CC-----GGGG--GGCSEEEECSSTT
T ss_pred             CC-eEEEEC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc--h--hh-----Hhhc--cCCCEEEEccCCC
Confidence            56 999999 8999999999999999987777765 443 444566652  2  11     1111  4689999999864


Q ss_pred             Ccc---c--cccCCCCCcEEEEeCCC
Q 045248          144 PWS---T--FEPNLGTNGKVIDITPG  164 (240)
Q Consensus       144 ~~~---~--~~~~l~~~G~iv~~g~~  164 (240)
                      ...   .  ....++++..++.++..
T Consensus       183 ~~~~~~~~l~~~~l~~g~~viD~~~~  208 (263)
T 2d5c_A          183 LEDPSASPLPAELFPEEGAAVDLVYR  208 (263)
T ss_dssp             TTCTTCCSSCGGGSCSSSEEEESCCS
T ss_pred             CCCCCCCCCCHHHcCCCCEEEEeecC
Confidence            211   1  14567777777777643

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=95.69  E-value=0.025  Score=45.36  Aligned_cols=87  Identities=21%  Similarity=0.156  Sum_probs=61.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC-
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP-  144 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~-  144 (240)
                      .+.+|.|+| .|.+|...++.++.+|.+|++.++..+.+.+++.|..  .  .+. ...+     ...|+|+.++.... 
T Consensus       149 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~g~~--~--~~l-~~~l-----~~aDvVil~vp~~~~  217 (334)
T 2dbq_A          149 YGKTIGIIG-LGRIGQAIAKRAKGFNMRILYYSRTRKEEVERELNAE--F--KPL-EDLL-----RESDFVVLAVPLTRE  217 (334)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHCCE--E--CCH-HHHH-----HHCSEEEECCCCCTT
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHhCCCEEEEECCCcchhhHhhcCcc--c--CCH-HHHH-----hhCCEEEECCCCChH
Confidence            678999999 9999999999999999999999875333556666642  1  111 1111     24799999997532 


Q ss_pred             ----c-cccccCCCCCcEEEEeCC
Q 045248          145 ----W-STFEPNLGTNGKVIDITP  163 (240)
Q Consensus       145 ----~-~~~~~~l~~~G~iv~~g~  163 (240)
                          + ...+..++++..++.++.
T Consensus       218 t~~~i~~~~~~~mk~~ailIn~sr  241 (334)
T 2dbq_A          218 TYHLINEERLKLMKKTAILINIAR  241 (334)
T ss_dssp             TTTCBCHHHHHHSCTTCEEEECSC
T ss_pred             HHHhhCHHHHhcCCCCcEEEECCC
Confidence                2 134567888888888774

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=95.68  E-value=0.011  Score=45.64  Aligned_cols=35  Identities=31%  Similarity=0.403  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .++++||+||+|++|.++++.+...|++|+.+++.
T Consensus        27 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~   61 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGGAVVTALRAAGARVAVADRA   61 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            67899999999999999999999999999998864

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=95.67  E-value=0.089  Score=42.36  Aligned_cols=131  Identities=8%  Similarity=-0.018  Sum_probs=76.7

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhC-CCEEEEEeC-c-ccH-HHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLG-NTHVTASCG-A-RNI-EFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~-g~~v~~~~~-~-~~~-~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      -+|.|+| +|.+|...+..++.. ++++++++. + ++. +.++++|...   +.+. ...+   ....+|+|+.++...
T Consensus         6 ~~vgiiG-~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~---~~~~-~~~l---~~~~~D~V~i~tp~~   77 (354)
T 3db2_A            6 VGVAAIG-LGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAG---DATM-EALL---AREDVEMVIITVPND   77 (354)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCC---CSSH-HHHH---HCSSCCEEEECSCTT
T ss_pred             ceEEEEc-cCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCC---cCCH-HHHh---cCCCCCEEEEeCChH
Confidence            5799999 899999888877766 678887774 3 444 3446677542   2211 1112   134699999999876


Q ss_pred             C-ccccccCCCCCcEEEEeCCCc---hHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCce
Q 045248          144 P-WSTFEPNLGTNGKVIDITPGP---SAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKL  207 (240)
Q Consensus       144 ~-~~~~~~~l~~~G~iv~~g~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i  207 (240)
                      . ...+..+++.|-. |.+..+-   .............++..+...+.......++.+.+++++|.+
T Consensus        78 ~h~~~~~~al~~gk~-vl~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~R~~p~~~~~k~~i~~g~i  144 (354)
T 3db2_A           78 KHAEVIEQCARSGKH-IYVEKPISVSLDHAQRIDQVIKETGVKFLCGHSSRRLGALRKMKEMIDTKEI  144 (354)
T ss_dssp             SHHHHHHHHHHTTCE-EEEESSSCSSHHHHHHHHHHHHHHCCCEEEECGGGGSHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHcCCE-EEEccCCCCCHHHHHHHHHHHHHcCCeEEEeechhcCHHHHHHHHHHhcCCC
Confidence            5 6666667776544 4454321   111111112222233333332223344568888899998876

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=95.66  E-value=0.0054  Score=49.18  Aligned_cols=77  Identities=21%  Similarity=0.211  Sum_probs=46.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCC--CEEEEEeCc---ccHHHHHhcC---CCEEEeCCCCccccc-cCCCCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGN--THVTASCGA---RNIEFVKSLG---ADEVLDYKTPDGAAL-KSPSGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g--~~v~~~~~~---~~~~~~~~~g---~~~v~~~~~~~~~~~-~~~~~~~~d~v  136 (240)
                      .+.+|||+||+|.+|..+++.+...|  .+|++..+.   ...+.++.+.   ...++..+-.+...+ ....+.++|+|
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~V  102 (346)
T 4egb_A           23 NAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQVI  102 (346)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCCEE
T ss_pred             CCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCCEE
Confidence            56789999999999999998888888  688888753   2333333322   112222221121111 11122359999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      |.+++.
T Consensus       103 ih~A~~  108 (346)
T 4egb_A          103 VNFAAE  108 (346)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            999984

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=95.65  E-value=0.011  Score=44.40  Aligned_cols=93  Identities=10%  Similarity=0.126  Sum_probs=60.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCC-CEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGA-DEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~-~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      +++.+||=+| +| .|..+..+++. |++|++++.+ ...+.+++... ..++..+...  .........||+|+.....
T Consensus        47 ~~~~~vLDiG-cG-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~--~~~~~~~~~fD~v~~~~~~  121 (226)
T 3m33_A           47 TPQTRVLEAG-CG-HGPDAARFGPQ-AARWAAYDFSPELLKLARANAPHADVYEWNGKG--ELPAGLGAPFGLIVSRRGP  121 (226)
T ss_dssp             CTTCEEEEES-CT-TSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCS--SCCTTCCCCEEEEEEESCC
T ss_pred             CCCCeEEEeC-CC-CCHHHHHHHHc-CCEEEEEECCHHHHHHHHHhCCCceEEEcchhh--ccCCcCCCCEEEEEeCCCH
Confidence            5788999998 44 47777777777 8899999964 66777765432 2222211111  1111114579999987543


Q ss_pred             -CCccccccCCCCCcEEEEeC
Q 045248          143 -IPWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       143 -~~~~~~~~~l~~~G~iv~~g  162 (240)
                       ..+..+.+.|+|+|+++..+
T Consensus       122 ~~~l~~~~~~LkpgG~l~~~~  142 (226)
T 3m33_A          122 TSVILRLPELAAPDAHFLYVG  142 (226)
T ss_dssp             SGGGGGHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHcCCCcEEEEeC
Confidence             33788889999999998554

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=95.65  E-value=0.012  Score=47.22  Aligned_cols=86  Identities=16%  Similarity=0.072  Sum_probs=57.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC-
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI-  143 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-  143 (240)
                      -.|.+|.|+| .|.+|...++.++.+|.+|++.++..+.+.+.+.|..  .  .+. ...+     ...|+|+.++... 
T Consensus       144 l~g~~vgIIG-~G~iG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~--~--~~l-~e~l-----~~aDiVil~vp~~~  212 (333)
T 2d0i_A          144 LYGKKVGILG-MGAIGKAIARRLIPFGVKLYYWSRHRKVNVEKELKAR--Y--MDI-DELL-----EKSDIVILALPLTR  212 (333)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHGGGTCEEEEECSSCCHHHHHHHTEE--E--CCH-HHHH-----HHCSEEEECCCCCT
T ss_pred             CCcCEEEEEc-cCHHHHHHHHHHHHCCCEEEEECCCcchhhhhhcCce--e--cCH-HHHH-----hhCCEEEEcCCCCh
Confidence            3688999999 9999999999999999999999875333555566632  1  111 1111     2468888888643 


Q ss_pred             C----cc-ccccCCCCCcEEEEeC
Q 045248          144 P----WS-TFEPNLGTNGKVIDIT  162 (240)
Q Consensus       144 ~----~~-~~~~~l~~~G~iv~~g  162 (240)
                      .    +. ..+..++++ .++.++
T Consensus       213 ~t~~~i~~~~~~~mk~g-ilin~s  235 (333)
T 2d0i_A          213 DTYHIINEERVKKLEGK-YLVNIG  235 (333)
T ss_dssp             TTTTSBCHHHHHHTBTC-EEEECS
T ss_pred             HHHHHhCHHHHhhCCCC-EEEECC
Confidence            1    22 234567777 666665

>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A

Probab=95.65  E-value=0.056  Score=44.03  Aligned_cols=79  Identities=19%  Similarity=0.161  Sum_probs=50.3

Q ss_pred             CCCCeEEEEcCCchHHHHH-HHHHHhCCCEEEEEeCc----cc-------------HHHHHhcCCCE-EEeCCCCcc---
Q 045248           65 GQQKNILVTAASGGVGHYA-VQLAKLGNTHVTASCGA----RN-------------IEFVKSLGADE-VLDYKTPDG---  122 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~-~~~a~~~g~~v~~~~~~----~~-------------~~~~~~~g~~~-v~~~~~~~~---  122 (240)
                      ..++++||+|+++|+|++. +.+|...|+.++.+..+    ++             .+.+++.|... .++-+-.+.   
T Consensus        48 ~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~i  127 (401)
T 4ggo_A           48 KAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEIK  127 (401)
T ss_dssp             CCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHHHH
Confidence            4578999999999999985 55665779988888742    11             14456667543 343333221   


Q ss_pred             -cccc--CCCCCcccEEEeCCCCC
Q 045248          123 -AALK--SPSGRKYDAVIHCATGI  143 (240)
Q Consensus       123 -~~~~--~~~~~~~d~v~d~~g~~  143 (240)
                       +.++  ....+++|+++.+++..
T Consensus       128 ~~vi~~i~~~~G~IDiLVhS~A~~  151 (401)
T 4ggo_A          128 AQVIEEAKKKGIKFDLIVYSLASP  151 (401)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCCCS
T ss_pred             HHHHHHHHHhcCCCCEEEEecccc
Confidence             1111  11346799999999853

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=95.62  E-value=0.019  Score=44.84  Aligned_cols=87  Identities=14%  Similarity=0.121  Sum_probs=59.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC-Cc
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI-PW  145 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~~  145 (240)
                      .+|.|+| .|.+|....+.+...|.+|++.+++ ++.+.+.+.|....   .+. ....     ...|+|+-++..+ .+
T Consensus         2 ~~i~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~---~~~-~~~~-----~~aDvvi~~vp~~~~~   71 (287)
T 3pef_A            2 QKFGFIG-LGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERA---ATP-CEVV-----ESCPVTFAMLADPAAA   71 (287)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEEC---SSH-HHHH-----HHCSEEEECCSSHHHH
T ss_pred             CEEEEEe-ecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeec---CCH-HHHH-----hcCCEEEEEcCCHHHH
Confidence            4789999 9999999999999999999988865 77777777765211   111 1111     2468999999843 23


Q ss_pred             cc-------cccCCCCCcEEEEeCCC
Q 045248          146 ST-------FEPNLGTNGKVIDITPG  164 (240)
Q Consensus       146 ~~-------~~~~l~~~G~iv~~g~~  164 (240)
                      ..       ....++++..++..+..
T Consensus        72 ~~v~~~~~~l~~~l~~~~~vi~~st~   97 (287)
T 3pef_A           72 EEVCFGKHGVLEGIGEGRGYVDMSTV   97 (287)
T ss_dssp             HHHHHSTTCHHHHCCTTCEEEECSCC
T ss_pred             HHHHcCcchHhhcCCCCCEEEeCCCC
Confidence            33       33456777777777643

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=95.62  E-value=0.019  Score=45.03  Aligned_cols=73  Identities=19%  Similarity=0.245  Sum_probs=46.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-c------cHHHH---HhcCCCEEEeCCCCccccc-cCCCCCcccE
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-R------NIEFV---KSLGADEVLDYKTPDGAAL-KSPSGRKYDA  135 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~------~~~~~---~~~g~~~v~~~~~~~~~~~-~~~~~~~~d~  135 (240)
                      ..+|+|+||+|.+|..+++.+...|.+|++++++ .      +.+.+   +..|.. ++..+-.+...+ ...  .++|+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~-~v~~D~~d~~~l~~~~--~~~d~   80 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGAN-IVHGSIDDHASLVEAV--KNVDV   80 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCE-EECCCTTCHHHHHHHH--HTCSE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCE-EEEeccCCHHHHHHHH--cCCCE
Confidence            4679999999999999999998899999998864 2      12222   233443 332221111111 111  25899


Q ss_pred             EEeCCCC
Q 045248          136 VIHCATG  142 (240)
Q Consensus       136 v~d~~g~  142 (240)
                      ||.+++.
T Consensus        81 vi~~a~~   87 (308)
T 1qyc_A           81 VISTVGS   87 (308)
T ss_dssp             EEECCCG
T ss_pred             EEECCcc
Confidence            9999985

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=95.58  E-value=0.0023  Score=48.50  Aligned_cols=97  Identities=15%  Similarity=0.081  Sum_probs=59.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhC--CCEEEEEeCc-ccHHHHH----hcCCCEEEeCCCCcc-ccccCC--CC--Cc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLG--NTHVTASCGA-RNIEFVK----SLGADEVLDYKTPDG-AALKSP--SG--RK  132 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~--g~~v~~~~~~-~~~~~~~----~~g~~~v~~~~~~~~-~~~~~~--~~--~~  132 (240)
                      .++.+||-+| +| .|..++.+++..  +.+|++++.+ +..+.++    +.|...-+.....+. ..+...  .+  ..
T Consensus        71 ~~~~~vLdiG-~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~  148 (232)
T 3cbg_A           71 TGAKQVLEIG-VF-RGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPE  148 (232)
T ss_dssp             HTCCEEEEEC-CT-TSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCC
T ss_pred             cCCCEEEEec-CC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCC
Confidence            4678999999 55 888889999976  4699999954 5555553    345421121111121 111111  11  57


Q ss_pred             ccEEEeCCC-C---CCccccccCCCCCcEEEEeCC
Q 045248          133 YDAVIHCAT-G---IPWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       133 ~d~v~d~~g-~---~~~~~~~~~l~~~G~iv~~g~  163 (240)
                      ||+|+-... .   ..+..+.+.|+++|.++.-..
T Consensus       149 fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~~  183 (232)
T 3cbg_A          149 FDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNV  183 (232)
T ss_dssp             EEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred             cCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            999984333 2   127778899999999987543

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=95.58  E-value=0.012  Score=44.43  Aligned_cols=94  Identities=15%  Similarity=0.135  Sum_probs=57.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      .++.+||-+| +| .|..+..+++. |. ++++++.+ ...+.+++.....-+.....+.... ......||+|+-...-
T Consensus        42 ~~~~~vLdiG-~G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~l  117 (243)
T 3bkw_A           42 VGGLRIVDLG-CG-FGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPDTGITYERADLDKL-HLPQDSFDLAYSSLAL  117 (243)
T ss_dssp             CTTCEEEEET-CT-TCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGC-CCCTTCEEEEEEESCG
T ss_pred             cCCCEEEEEc-Cc-CCHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhc-cCCCCCceEEEEeccc
Confidence            5788999998 44 36666666665 77 99999954 6677776654321111111111111 1234679999865431


Q ss_pred             -------CCccccccCCCCCcEEEEeC
Q 045248          143 -------IPWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       143 -------~~~~~~~~~l~~~G~iv~~g  162 (240)
                             ..+..+.+.|+++|+++...
T Consensus       118 ~~~~~~~~~l~~~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          118 HYVEDVARLFRTVHQALSPGGHFVFST  144 (243)
T ss_dssp             GGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccchHHHHHHHHHHhcCcCcEEEEEe
Confidence                   11556677899999988754

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=95.57  E-value=0.023  Score=45.22  Aligned_cols=73  Identities=22%  Similarity=0.250  Sum_probs=44.1

Q ss_pred             eEEEEcCCchHHHHHHHHHHhC---C---CEEEEEeCcc---cHHHHHhcC--CC-EEEeCCCCccccccCCCCCcccEE
Q 045248           69 NILVTAASGGVGHYAVQLAKLG---N---THVTASCGAR---NIEFVKSLG--AD-EVLDYKTPDGAALKSPSGRKYDAV  136 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~---g---~~v~~~~~~~---~~~~~~~~g--~~-~v~~~~~~~~~~~~~~~~~~~d~v  136 (240)
                      +|||+||+|.+|..+++.+...   |   .+|+++++..   +.+.++.+.  .. .++..+-.+...+...- .++|+|
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-~~~d~V   80 (337)
T 1r6d_A            2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLAREL-RGVDAI   80 (337)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHT-TTCCEE
T ss_pred             eEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHh-cCCCEE
Confidence            6899999999999998877775   7   8999998631   222222221  11 22222111111111111 579999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      |.++|.
T Consensus        81 ih~A~~   86 (337)
T 1r6d_A           81 VHFAAE   86 (337)
T ss_dssp             EECCSC
T ss_pred             EECCCc
Confidence            999984

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=95.56  E-value=0.0031  Score=47.91  Aligned_cols=96  Identities=14%  Similarity=0.067  Sum_probs=60.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhC--CCEEEEEeCc-ccHHHHH----hcCCCEEEeCCCCcc-cccc-C--------
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLG--NTHVTASCGA-RNIEFVK----SLGADEVLDYKTPDG-AALK-S--------  127 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~--g~~v~~~~~~-~~~~~~~----~~g~~~v~~~~~~~~-~~~~-~--------  127 (240)
                      .++++||-+| +| .|..+..+++..  +.+|++++.+ +..+.++    +.|...-+.....+. .... .        
T Consensus        59 ~~~~~VLdiG-~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~  136 (239)
T 2hnk_A           59 SGAKRIIEIG-TF-TGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPS  136 (239)
T ss_dssp             HTCSEEEEEC-CT-TCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCG
T ss_pred             hCcCEEEEEe-CC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccc
Confidence            5788999999 55 688888999987  4699999964 5555554    345422111111111 1011 0        


Q ss_pred             ----CC-C-CcccEEEeCCCCC----CccccccCCCCCcEEEEeC
Q 045248          128 ----PS-G-RKYDAVIHCATGI----PWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       128 ----~~-~-~~~d~v~d~~g~~----~~~~~~~~l~~~G~iv~~g  162 (240)
                          .. + ..||+|+-..+.+    .+..+.+.|+++|.++...
T Consensus       137 ~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          137 WASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             GGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence                01 1 5799999776533    2567788999999998754

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=95.54  E-value=0.021  Score=43.63  Aligned_cols=33  Identities=9%  Similarity=0.184  Sum_probs=30.0

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      +++||+||+|++|..+++.+...|++|+.++++
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~   34 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIR   34 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            479999999999999999999999999999864

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=95.54  E-value=0.026  Score=43.05  Aligned_cols=33  Identities=27%  Similarity=0.255  Sum_probs=30.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEe
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASC   98 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~   98 (240)
                      .++++||+||++++|.++++.+...|++|+.+.
T Consensus         6 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~   38 (255)
T 3icc_A            6 KGKVALVTGASRGIGRAIAKRLANDGALVAIHY   38 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEe
Confidence            678999999999999999999999999998875

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=95.51  E-value=0.17  Score=41.01  Aligned_cols=132  Identities=14%  Similarity=0.082  Sum_probs=74.0

Q ss_pred             CeEEEEcCCchHHHH-HHHHHHhC-CCEEEEEeCcccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC-
Q 045248           68 KNILVTAASGGVGHY-AVQLAKLG-NTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP-  144 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~-~~~~a~~~-g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~-  144 (240)
                      -+|.|+| +|.+|.. ....++.. ++++++++.....+..++++...++.  +. ...+   ....+|+|+.|+.... 
T Consensus         8 ~rvgiiG-~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~--~~-~~ll---~~~~~D~V~i~tp~~~H   80 (364)
T 3e82_A            8 INIALIG-YGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRDLPDVTVIA--SP-EAAV---QHPDVDLVVIASPNATH   80 (364)
T ss_dssp             EEEEEEC-CSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHHHCTTSEEES--CH-HHHH---TCTTCSEEEECSCGGGH
T ss_pred             ceEEEEC-CCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCcEEC--CH-HHHh---cCCCCCEEEEeCChHHH
Confidence            5799999 8999985 66666655 67888888542222224554444432  11 1111   2356999999998755 


Q ss_pred             ccccccCCCCCcEEEEeCCCch---HHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCce
Q 045248          145 WSTFEPNLGTNGKVIDITPGPS---AMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKL  207 (240)
Q Consensus       145 ~~~~~~~l~~~G~iv~~g~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i  207 (240)
                      ...+..+++.| +-|.+..+-.   ............++..+...+.......++.+.+++++|.+
T Consensus        81 ~~~~~~al~aG-k~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~g~i  145 (364)
T 3e82_A           81 APLARLALNAG-KHVVVDKPFTLDMQEARELIALAEEKQRLLSVFHNRRWDSDYLGIRQVIEQGTL  145 (364)
T ss_dssp             HHHHHHHHHTT-CEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHCC-CcEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEeecccCHHHHHHHHHHHcCCC
Confidence            66666677665 5566664321   11111112222233333222222334567888899988765

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=95.50  E-value=0.12  Score=41.67  Aligned_cols=132  Identities=12%  Similarity=0.037  Sum_probs=75.5

Q ss_pred             CeEEEEcCCchHHHH-HHHHHHhC-CCEEEEEeCcccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC-
Q 045248           68 KNILVTAASGGVGHY-AVQLAKLG-NTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP-  144 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~-~~~~a~~~-g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~-  144 (240)
                      -+|.|+| +|.+|.. .+..++.. ++++++++..+..+..++++...++.  +.. ..+   ....+|+|+.|+.... 
T Consensus         6 ~rvgiiG-~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~--~~~-~ll---~~~~vD~V~i~tp~~~H   78 (358)
T 3gdo_A            6 IKVGILG-YGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKRDFPDAEVVH--ELE-EIT---NDPAIELVIVTTPSGLH   78 (358)
T ss_dssp             EEEEEEC-CSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHHHCTTSEEES--STH-HHH---TCTTCCEEEECSCTTTH
T ss_pred             ceEEEEc-cCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCceEC--CHH-HHh---cCCCCCEEEEcCCcHHH
Confidence            4789999 8999985 66666655 67888888643333455665444442  111 112   2346999999998765 


Q ss_pred             ccccccCCCCCcEEEEeCCCch---HHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCce
Q 045248          145 WSTFEPNLGTNGKVIDITPGPS---AMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKL  207 (240)
Q Consensus       145 ~~~~~~~l~~~G~iv~~g~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i  207 (240)
                      ...+..+++.| +-|.+..+-.   ............++..+...+.......++.+.+++++|.+
T Consensus        79 ~~~~~~al~aG-khVl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~i  143 (358)
T 3gdo_A           79 YEHTMACIQAG-KHVVMEKPMTATAEEGETLKRAADEKGVLLSVYHNRRWDNDFLTIKKLISEGSL  143 (358)
T ss_dssp             HHHHHHHHHTT-CEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGSHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHcC-CeEEEecCCcCCHHHHHHHHHHHHHcCCeEEEeeecccCHHHHHHHHHHhcCCC
Confidence            66667777765 4455553311   11111112222233333322222234567888899999865

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=95.49  E-value=0.019  Score=47.00  Aligned_cols=36  Identities=14%  Similarity=0.076  Sum_probs=30.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ..+.+|||+||+|-+|..+++.+...|++|+++++.
T Consensus         9 ~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~   44 (404)
T 1i24_A            9 HHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNL   44 (404)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             cCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEec
Confidence            578999999999999999998888889999999853

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=95.47  E-value=0.079  Score=40.09  Aligned_cols=99  Identities=9%  Similarity=-0.069  Sum_probs=61.3

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC--EEEEEeC-cccHHHHHhc----CCCEEEeCCCCccccccC
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT--HVTASCG-ARNIEFVKSL----GADEVLDYKTPDGAALKS  127 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~~-~~~~~~~~~~----g~~~v~~~~~~~~~~~~~  127 (240)
                      +..++     +||++||=.|+  |.|..+..+++..|-  +|++++- ++..+.+++.    +-...+..+..+..... 
T Consensus        71 ~~l~i-----kpG~~VldlG~--G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~-  142 (233)
T 4df3_A           71 IELPV-----KEGDRILYLGI--ASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYR-  142 (233)
T ss_dssp             SCCCC-----CTTCEEEEETC--TTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGT-
T ss_pred             hhcCC-----CCCCEEEEecC--cCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccc-
Confidence            44566     89999999983  457778889988775  8999995 4656666432    21112222211111111 


Q ss_pred             CCCCcccEEEeCCCCC-----CccccccCCCCCcEEEEe
Q 045248          128 PSGRKYDAVIHCATGI-----PWSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       128 ~~~~~~d~v~d~~g~~-----~~~~~~~~l~~~G~iv~~  161 (240)
                      .....+|+|+-....+     .+..+.+.|+|+|+++..
T Consensus       143 ~~~~~vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          143 HLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             TTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccceEEEEEEeccCChhHHHHHHHHHHhccCCCEEEEE
Confidence            1224689888655432     155667789999998765

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=95.46  E-value=0.041  Score=43.77  Aligned_cols=74  Identities=20%  Similarity=0.207  Sum_probs=45.0

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-----ccHHHHHhc-CC-CEEEeCCCCccccc-cCCCCCcccEEEeCC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA-----RNIEFVKSL-GA-DEVLDYKTPDGAAL-KSPSGRKYDAVIHCA  140 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-----~~~~~~~~~-g~-~~v~~~~~~~~~~~-~~~~~~~~d~v~d~~  140 (240)
                      +|||+||+|.+|..+++.+...|++|+++.+.     +..+.++++ +. ...+..+-.+...+ +.....++|+||.++
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vih~A   81 (338)
T 1udb_A            2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFA   81 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhccCCCEEEECC
Confidence            68999999999999999888899999988742     122333322 32 22332221111111 111113699999999


Q ss_pred             CC
Q 045248          141 TG  142 (240)
Q Consensus       141 g~  142 (240)
                      |.
T Consensus        82 ~~   83 (338)
T 1udb_A           82 GL   83 (338)
T ss_dssp             SC
T ss_pred             cc
Confidence            84

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=95.45  E-value=0.038  Score=48.90  Aligned_cols=35  Identities=20%  Similarity=0.152  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .+++|||+||+|.+|..+++.+...|++|+++++.
T Consensus        10 ~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~   44 (699)
T 1z45_A           10 TSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNL   44 (699)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            56899999999999999999988899999999853

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=95.44  E-value=0.013  Score=46.70  Aligned_cols=75  Identities=23%  Similarity=0.195  Sum_probs=44.8

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCC--CEEEEEeCc---ccHHHHHhc--CCC-EEEeCCCCccccccCCCCCcccEEEe
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGN--THVTASCGA---RNIEFVKSL--GAD-EVLDYKTPDGAALKSPSGRKYDAVIH  138 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g--~~v~~~~~~---~~~~~~~~~--g~~-~v~~~~~~~~~~~~~~~~~~~d~v~d  138 (240)
                      +.+|||+||+|.+|..+++.+...|  ++|+++++.   .+.+.++++  +.. ..+..+-.+...+.... .++|+||.
T Consensus         3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-~~~d~vih   81 (336)
T 2hun_A            3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELV-RKVDGVVH   81 (336)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHH-HTCSEEEE
T ss_pred             CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHh-hCCCEEEE
Confidence            3579999999999999988777765  799998853   222323222  111 22222111111111111 47999999


Q ss_pred             CCCC
Q 045248          139 CATG  142 (240)
Q Consensus       139 ~~g~  142 (240)
                      ++|.
T Consensus        82 ~A~~   85 (336)
T 2hun_A           82 LAAE   85 (336)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9985

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=95.44  E-value=0.22  Score=38.88  Aligned_cols=90  Identities=16%  Similarity=0.176  Sum_probs=56.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCC----CE--EEeCCCCccccccCCCCCcccEEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGA----DE--VLDYKTPDGAALKSPSGRKYDAVI  137 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~----~~--v~~~~~~~~~~~~~~~~~~~d~v~  137 (240)
                      .+++++|+| +|++|.+++..+...| +|+++.++ ++.+.+ ++++.    ..  .++..+     . ...-.++|+++
T Consensus       127 ~~k~vlV~G-aGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~-----~-~~~~~~~DilV  198 (287)
T 1nvt_A          127 KDKNIVIYG-AGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSG-----L-DVDLDGVDIII  198 (287)
T ss_dssp             CSCEEEEEC-CSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEEC-----T-TCCCTTCCEEE
T ss_pred             CCCEEEEEC-chHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEee-----H-HHhhCCCCEEE
Confidence            678999999 5799999999999999 99888865 444333 33321    00  011111     0 11124699999


Q ss_pred             eCCCCCCcc------c-cccCCCCCcEEEEeCC
Q 045248          138 HCATGIPWS------T-FEPNLGTNGKVIDITP  163 (240)
Q Consensus       138 d~~g~~~~~------~-~~~~l~~~G~iv~~g~  163 (240)
                      .++|.....      . ....++++..++.+..
T Consensus       199 n~ag~~~~~~~~~~~~~~~~~l~~~~~v~Dv~y  231 (287)
T 1nvt_A          199 NATPIGMYPNIDVEPIVKAEKLREDMVVMDLIY  231 (287)
T ss_dssp             ECSCTTCTTCCSSCCSSCSTTCCSSSEEEECCC
T ss_pred             ECCCCCCCCCCCCCCCCCHHHcCCCCEEEEeee
Confidence            999853211      1 2456777777887765

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=95.43  E-value=0.0047  Score=46.48  Aligned_cols=97  Identities=16%  Similarity=0.094  Sum_probs=59.9

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhC--CCEEEEEeCc-ccHHHHH----hcCCCEEEeCCCCcc-ccccCC--C--CCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLG--NTHVTASCGA-RNIEFVK----SLGADEVLDYKTPDG-AALKSP--S--GRK  132 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~--g~~v~~~~~~-~~~~~~~----~~g~~~v~~~~~~~~-~~~~~~--~--~~~  132 (240)
                      .++.+||-+| +| .|..++.+++..  +.+|++++.+ +..+.++    ..|...-+.....+. ......  .  ...
T Consensus        68 ~~~~~vLdiG-~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~  145 (229)
T 2avd_A           68 IQAKKALDLG-TF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGT  145 (229)
T ss_dssp             TTCCEEEEEC-CT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTC
T ss_pred             cCCCEEEEEc-CC-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCC
Confidence            5778999998 55 788888999876  4599999954 5555554    345321111111111 111111  1  157


Q ss_pred             ccEEEeCCCCC----CccccccCCCCCcEEEEeCC
Q 045248          133 YDAVIHCATGI----PWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       133 ~d~v~d~~g~~----~~~~~~~~l~~~G~iv~~g~  163 (240)
                      ||+|+-.....    .+..+.+.|+++|.++....
T Consensus       146 ~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~  180 (229)
T 2avd_A          146 FDVAVVDADKENCSAYYERCLQLLRPGGILAVLRV  180 (229)
T ss_dssp             EEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             ccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence            99987654432    26778889999999987654

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=95.42  E-value=0.063  Score=43.45  Aligned_cols=93  Identities=16%  Similarity=0.088  Sum_probs=62.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP  144 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~  144 (240)
                      ...+|.|+| .|.+|....+.+...|.+|++.+++ ++.+.+.+.|....   .+. .......  ...|+||-++....
T Consensus        21 ~~mkIgiIG-lG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~---~s~-~e~~~~a--~~~DvVi~~vp~~~   93 (358)
T 4e21_A           21 QSMQIGMIG-LGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGA---RSI-EEFCAKL--VKPRVVWLMVPAAV   93 (358)
T ss_dssp             -CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCC---SSH-HHHHHHS--CSSCEEEECSCGGG
T ss_pred             cCCEEEEEC-chHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEe---CCH-HHHHhcC--CCCCEEEEeCCHHH
Confidence            457899999 9999999999999999999999875 67777777664311   111 1111111  23599999997543


Q ss_pred             ----ccccccCCCCCcEEEEeCCCc
Q 045248          145 ----WSTFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus       145 ----~~~~~~~l~~~G~iv~~g~~~  165 (240)
                          +......++++..++.++...
T Consensus        94 v~~vl~~l~~~l~~g~iiId~st~~  118 (358)
T 4e21_A           94 VDSMLQRMTPLLAANDIVIDGGNSH  118 (358)
T ss_dssp             HHHHHHHHGGGCCTTCEEEECSSCC
T ss_pred             HHHHHHHHHhhCCCCCEEEeCCCCC
Confidence                334455677777788777544

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=95.41  E-value=0.011  Score=47.93  Aligned_cols=93  Identities=18%  Similarity=0.284  Sum_probs=52.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      .+..+|+|+| +|.+|..+++.+.. ...|.+.+.+ ++.+.+++......+|..+.+  .+...- .+.|+|+.+++..
T Consensus        14 g~~mkilvlG-aG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~--~l~~~~-~~~DvVi~~~p~~   88 (365)
T 3abi_A           14 GRHMKVLILG-AGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFD--KLVEVM-KEFELVIGALPGF   88 (365)
T ss_dssp             --CCEEEEEC-CSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHH--HHHHHH-TTCSEEEECCCGG
T ss_pred             CCccEEEEEC-CCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHH--HHHHHH-hCCCEEEEecCCc
Confidence            3456899999 59999999888864 3577777654 666666554322223332221  111111 3579999999754


Q ss_pred             C-ccccccCCCCCcEEEEeC
Q 045248          144 P-WSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       144 ~-~~~~~~~l~~~G~iv~~g  162 (240)
                      . ...+-.|++.+=.++.+.
T Consensus        89 ~~~~v~~~~~~~g~~yvD~s  108 (365)
T 3abi_A           89 LGFKSIKAAIKSKVDMVDVS  108 (365)
T ss_dssp             GHHHHHHHHHHHTCEEEECC
T ss_pred             ccchHHHHHHhcCcceEeee
Confidence            3 223333444444555443

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=95.39  E-value=0.14  Score=40.80  Aligned_cols=130  Identities=15%  Similarity=0.143  Sum_probs=74.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhC-CCEEEEEeC-c-ccH-HHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLG-NTHVTASCG-A-RNI-EFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~-g~~v~~~~~-~-~~~-~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      -+|.|+| +|.+|...+..++.. +++++++++ + ++. +.++++|..  +  .+. ...+   ....+|+|+.++...
T Consensus         4 ~~vgiiG-~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~--~--~~~-~~~l---~~~~~D~V~i~tp~~   74 (331)
T 4hkt_A            4 VRFGLLG-AGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE--V--RTI-DAIE---AAADIDAVVICTPTD   74 (331)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE--E--CCH-HHHH---HCTTCCEEEECSCGG
T ss_pred             eEEEEEC-CCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC--c--CCH-HHHh---cCCCCCEEEEeCCch
Confidence            3689999 899999888777765 678887764 3 443 444667753  2  221 1112   124699999999875


Q ss_pred             C-ccccccCCCCCcEEEEeCCCc---hHHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCce
Q 045248          144 P-WSTFEPNLGTNGKVIDITPGP---SAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKL  207 (240)
Q Consensus       144 ~-~~~~~~~l~~~G~iv~~g~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i  207 (240)
                      . ...+..+++.+ +-|.+..+-   .............++..+...+.......++.+.+++++|.+
T Consensus        75 ~h~~~~~~al~~g-k~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~g~i  141 (331)
T 4hkt_A           75 THADLIERFARAG-KAIFCEKPIDLDAERVRACLKVVSDTKAKLMVGFNRRFDPHFMAVRKAIDDGRI  141 (331)
T ss_dssp             GHHHHHHHHHHTT-CEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHHTTTT
T ss_pred             hHHHHHHHHHHcC-CcEEEecCCCCCHHHHHHHHHHHHHcCCeEEEcccccCCHHHHHHHHHHHcCCC
Confidence            5 55666667665 445555331   111111122222233333222222334567888899998765

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=95.36  E-value=0.045  Score=41.29  Aligned_cols=94  Identities=9%  Similarity=0.026  Sum_probs=60.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      ...++++|+| .|.+|..+++.+...|. |++++++ ++.+.++ .|. .++..+..+...++..+-.++|.++-+++..
T Consensus         7 ~~~~~viI~G-~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~-~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d   82 (234)
T 2aef_A            7 AKSRHVVICG-WSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGA-NFVHGDPTRVSDLEKANVRGARAVIVDLESD   82 (234)
T ss_dssp             ---CEEEEES-CCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTC-EEEESCTTCHHHHHHTTCTTCSEEEECCSCH
T ss_pred             CCCCEEEEEC-CChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCC-eEEEcCCCCHHHHHhcCcchhcEEEEcCCCc
Confidence            4567899999 79999999999998898 8888865 6666666 564 3443333333333333345789999999864


Q ss_pred             C----ccccccCCCCCcEEEEeC
Q 045248          144 P----WSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       144 ~----~~~~~~~l~~~G~iv~~g  162 (240)
                      .    .....+.+.+..+++.--
T Consensus        83 ~~n~~~~~~a~~~~~~~~iia~~  105 (234)
T 2aef_A           83 SETIHCILGIRKIDESVRIIAEA  105 (234)
T ss_dssp             HHHHHHHHHHHHHCSSSEEEEEC
T ss_pred             HHHHHHHHHHHHHCCCCeEEEEE
Confidence            2    223344556665665543

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=95.35  E-value=0.035  Score=44.49  Aligned_cols=87  Identities=13%  Similarity=0.147  Sum_probs=59.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC-
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP-  144 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~-  144 (240)
                      .|++|.|+| .|.+|...++.++.+|++|++.++..+.. +++. .. .   .+.....+     ...|+|+.++.... 
T Consensus       145 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~-~~-~---~~~l~ell-----~~aDvV~l~~p~~~~  212 (333)
T 1j4a_A          145 RDQVVGVVG-TGHIGQVFMQIMEGFGAKVITYDIFRNPE-LEKK-GY-Y---VDSLDDLY-----KQADVISLHVPDVPA  212 (333)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCHH-HHHT-TC-B---CSCHHHHH-----HHCSEEEECSCCCGG
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHHCCCEEEEECCCcchh-HHhh-Ce-e---cCCHHHHH-----hhCCEEEEcCCCcHH
Confidence            578999999 99999999999999999999998653322 3332 22 1   11101111     24799999987421 


Q ss_pred             ----c-cccccCCCCCcEEEEeCCC
Q 045248          145 ----W-STFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       145 ----~-~~~~~~l~~~G~iv~~g~~  164 (240)
                          + ...+..+++++.++.++..
T Consensus       213 t~~li~~~~l~~mk~ga~lIn~arg  237 (333)
T 1j4a_A          213 NVHMINDESIAKMKQDVVIVNVSRG  237 (333)
T ss_dssp             GTTCBSHHHHHHSCTTEEEEECSCG
T ss_pred             HHHHHhHHHHhhCCCCcEEEECCCC
Confidence                2 2355678999999888753

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=95.34  E-value=0.055  Score=42.82  Aligned_cols=89  Identities=12%  Similarity=0.060  Sum_probs=61.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC-
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI-  143 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-  143 (240)
                      .-.+|.|+| .|.+|....+.+...|.+|++.+++ ++.+.+.+.|....   .+. ....     ...|+||-++..+ 
T Consensus        20 ~m~~I~iIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~---~~~-~~~~-----~~aDvvi~~vp~~~   89 (310)
T 3doj_A           20 HMMEVGFLG-LGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVC---ESP-AEVI-----KKCKYTIAMLSDPC   89 (310)
T ss_dssp             CSCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEEC---SSH-HHHH-----HHCSEEEECCSSHH
T ss_pred             cCCEEEEEC-ccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEc---CCH-HHHH-----HhCCEEEEEcCCHH
Confidence            346899999 9999999999999999999999865 77777777775321   111 1111     2468999999753 


Q ss_pred             Cc-------cccccCCCCCcEEEEeCCC
Q 045248          144 PW-------STFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       144 ~~-------~~~~~~l~~~G~iv~~g~~  164 (240)
                      .+       ......++++..++.++..
T Consensus        90 ~~~~v~~~~~~l~~~l~~g~~vv~~st~  117 (310)
T 3doj_A           90 AALSVVFDKGGVLEQICEGKGYIDMSTV  117 (310)
T ss_dssp             HHHHHHHSTTCGGGGCCTTCEEEECSCC
T ss_pred             HHHHHHhCchhhhhccCCCCEEEECCCC
Confidence            22       3334556777777777654

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=95.34  E-value=0.058  Score=41.97  Aligned_cols=84  Identities=12%  Similarity=0.039  Sum_probs=56.1

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC-cc
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP-WS  146 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~-~~  146 (240)
                      +|.|+| +|.+|......+.. |.+|++.+++ ++.+.+.+.|... .+   . ...+     ...|+|+.|+..+. +.
T Consensus         3 ~i~iiG-~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~-~~---~-~~~~-----~~~D~vi~~v~~~~~~~   70 (289)
T 2cvz_A            3 KVAFIG-LGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSE-AV---P-LERV-----AEARVIFTCLPTTREVY   70 (289)
T ss_dssp             CEEEEC-CSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCE-EC---C-GGGG-----GGCSEEEECCSSHHHHH
T ss_pred             eEEEEc-ccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcc-cC---H-HHHH-----hCCCEEEEeCCChHHHH
Confidence            588999 89999998887777 9998888764 5666666556432 11   1 1111     35899999998643 33


Q ss_pred             c----cccCCCCCcEEEEeCCC
Q 045248          147 T----FEPNLGTNGKVIDITPG  164 (240)
Q Consensus       147 ~----~~~~l~~~G~iv~~g~~  164 (240)
                      .    ....++++..++.++..
T Consensus        71 ~v~~~l~~~l~~~~~vv~~s~~   92 (289)
T 2cvz_A           71 EVAEALYPYLREGTYWVDATSG   92 (289)
T ss_dssp             HHHHHHTTTCCTTEEEEECSCC
T ss_pred             HHHHHHHhhCCCCCEEEECCCC
Confidence            3    33566677777766543

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=95.33  E-value=0.029  Score=42.33  Aligned_cols=75  Identities=15%  Similarity=0.177  Sum_probs=47.7

Q ss_pred             CCCeEEEEcC----------------CchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEEEeCCCCc--cccccC
Q 045248           66 QQKNILVTAA----------------SGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPD--GAALKS  127 (240)
Q Consensus        66 ~g~~vlV~G~----------------~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~--~~~~~~  127 (240)
                      .|++|||+||                +|.+|.++++.+...|++|+.+.++.........|. .+++.....  ...+..
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~~~~~~~-~~~~v~s~~em~~~v~~   80 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKPEPHPNL-SIREITNTKDLLIEMQE   80 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCCCCCTTE-EEEECCSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCCCe-EEEEHhHHHHHHHHHHH
Confidence            5789999998                788999999999999999999997532210000122 344433221  111111


Q ss_pred             CCCCcccEEEeCCCC
Q 045248          128 PSGRKYDAVIHCATG  142 (240)
Q Consensus       128 ~~~~~~d~v~d~~g~  142 (240)
                      . -.++|++|.+++-
T Consensus        81 ~-~~~~Dili~aAAv   94 (232)
T 2gk4_A           81 R-VQDYQVLIHSMAV   94 (232)
T ss_dssp             H-GGGCSEEEECSBC
T ss_pred             h-cCCCCEEEEcCcc
Confidence            1 1468999999884

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=95.33  E-value=0.05  Score=46.47  Aligned_cols=78  Identities=15%  Similarity=0.163  Sum_probs=49.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCE-EEEE-eCcc------------------cHHHHHhcCCCEEE-e--CCCCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTH-VTAS-CGAR------------------NIEFVKSLGADEVL-D--YKTPD  121 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~-v~~~-~~~~------------------~~~~~~~~g~~~v~-~--~~~~~  121 (240)
                      ++++++||+||+|++|..+++.+...|++ ++.+ .++.                  ..+.+++.|....+ .  ..+..
T Consensus       249 ~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd~~  328 (525)
T 3qp9_A          249 QADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTDAE  328 (525)
T ss_dssp             CTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTSHH
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCCHH
Confidence            67899999999999999999888888995 6666 5431                  12334455654222 2  22221


Q ss_pred             --cccccC-CCCCcccEEEeCCCC
Q 045248          122 --GAALKS-PSGRKYDAVIHCATG  142 (240)
Q Consensus       122 --~~~~~~-~~~~~~d~v~d~~g~  142 (240)
                        ...+.. ....++|.||.+.|-
T Consensus       329 ~v~~~~~~i~~~g~id~vVh~AGv  352 (525)
T 3qp9_A          329 AAARLLAGVSDAHPLSAVLHLPPT  352 (525)
T ss_dssp             HHHHHHHTSCTTSCEEEEEECCCC
T ss_pred             HHHHHHHHHHhcCCCcEEEECCcC
Confidence              111111 123579999999983

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=95.31  E-value=0.021  Score=49.64  Aligned_cols=76  Identities=18%  Similarity=0.205  Sum_probs=49.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcc---cHHHHHhcCCCEEEeCCCC-c--cccccC--CCCCcccEEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGAR---NIEFVKSLGADEVLDYKTP-D--GAALKS--PSGRKYDAVI  137 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~---~~~~~~~~g~~~v~~~~~~-~--~~~~~~--~~~~~~d~v~  137 (240)
                      .++.++|+||++|+|.+.++.+...|++|++..+..   -.+.+++.|...+....+- .  ...++.  ..-+++|+++
T Consensus       321 ~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~G~iDiLV  400 (604)
T 2et6_A          321 KDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKDATKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDKYGTIDILV  400 (604)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCccHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHHhcCCCCEEE
Confidence            478899999999999999999999999999887432   1234445554333322222 1  111111  0124699999


Q ss_pred             eCCC
Q 045248          138 HCAT  141 (240)
Q Consensus       138 d~~g  141 (240)
                      ++.|
T Consensus       401 nNAG  404 (604)
T 2et6_A          401 NNAG  404 (604)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9998

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=95.30  E-value=0.0052  Score=48.33  Aligned_cols=32  Identities=22%  Similarity=0.207  Sum_probs=28.5

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCC-CEEEEEeCc
Q 045248           69 NILVTAASGGVGHYAVQLAKLGN-THVTASCGA  100 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g-~~v~~~~~~  100 (240)
                      +|||+||+|.+|..+++.+...| .+|+++.+.
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~   33 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNL   33 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccC
Confidence            48999999999999999888889 799998864

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=95.29  E-value=0.024  Score=44.49  Aligned_cols=34  Identities=12%  Similarity=0.135  Sum_probs=29.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~  100 (240)
                      .+.+|+|+| +|++|..++..+...|. ++..++.+
T Consensus        35 ~~~~VlVvG-aGGlGs~va~~La~aGVG~i~lvD~D   69 (292)
T 3h8v_A           35 RTFAVAIVG-VGGVGSVTAEMLTRCGIGKLLLFDYD   69 (292)
T ss_dssp             GGCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             hCCeEEEEC-cCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            567999999 99999999999999998 88777743

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=95.28  E-value=0.027  Score=42.19  Aligned_cols=94  Identities=11%  Similarity=-0.018  Sum_probs=56.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCC--CEEEEEeCc-ccHHHHHh----cCCCEEEeCCCCccccccCCCCCcccEEE
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGN--THVTASCGA-RNIEFVKS----LGADEVLDYKTPDGAALKSPSGRKYDAVI  137 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g--~~v~~~~~~-~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~~~~~d~v~  137 (240)
                      +++++||-.| +|. |..+..+++..|  .+|++++.+ +..+.+++    .....++..+..+...... ....||+|+
T Consensus        72 ~~~~~vLDlG-~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~D~v~  148 (227)
T 1g8a_A           72 KPGKSVLYLG-IAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRA-LVPKVDVIF  148 (227)
T ss_dssp             CTTCEEEEET-TTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTT-TCCCEEEEE
T ss_pred             CCCCEEEEEe-ccC-CHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhc-ccCCceEEE
Confidence            7889999998 554 878888888764  599999854 44444422    2111222211111111111 124799998


Q ss_pred             eCCCCC----C-ccccccCCCCCcEEEEe
Q 045248          138 HCATGI----P-WSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       138 d~~g~~----~-~~~~~~~l~~~G~iv~~  161 (240)
                      -....+    . +..+.+.|+++|+++..
T Consensus       149 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          149 EDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ECCCCHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            665432    2 56677899999998876

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=95.27  E-value=0.027  Score=42.73  Aligned_cols=33  Identities=18%  Similarity=0.202  Sum_probs=29.8

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      +++||+||+|++|..+++.+...|++|++++++
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~   34 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRG   34 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCC
Confidence            469999999999999999888899999999864

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=95.26  E-value=0.069  Score=41.49  Aligned_cols=88  Identities=16%  Similarity=0.173  Sum_probs=57.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      .+.+++|+| +|++|.+++..+...|++|++..++ ++.+.+ +++|. .+.  .+. ...+     ...|+|+.+++..
T Consensus       128 ~~~~v~iiG-aG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~-~~~--~~~-~~~~-----~~aDiVi~atp~~  197 (275)
T 2hk9_A          128 KEKSILVLG-AGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPL-EVV--NSP-EEVI-----DKVQVIVNTTSVG  197 (275)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCE-EEC--SCG-GGTG-----GGCSEEEECSSTT
T ss_pred             CCCEEEEEC-chHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCC-eee--hhH-Hhhh-----cCCCEEEEeCCCC
Confidence            678999999 8999999999888889988777765 454433 34552 121  110 1111     3689999999854


Q ss_pred             Ccc---cc--ccCCCCCcEEEEeCC
Q 045248          144 PWS---TF--EPNLGTNGKVIDITP  163 (240)
Q Consensus       144 ~~~---~~--~~~l~~~G~iv~~g~  163 (240)
                      ...   ..  ...++++..++.+..
T Consensus       198 ~~~~~~~~i~~~~l~~g~~viDv~~  222 (275)
T 2hk9_A          198 LKDEDPEIFNYDLIKKDHVVVDIIY  222 (275)
T ss_dssp             SSTTCCCSSCGGGCCTTSEEEESSS
T ss_pred             CCCCCCCCCCHHHcCCCCEEEEcCC
Confidence            311   11  345777777777766

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=95.25  E-value=0.019  Score=42.74  Aligned_cols=97  Identities=22%  Similarity=0.185  Sum_probs=60.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC-
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG-  142 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~-  142 (240)
                      .++.+||=+| +| .|..+..+++. |++|++++.+ ...+.+++.+........-.+........+..||+|+-...- 
T Consensus        51 ~~~~~vLdiG-~G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~  127 (227)
T 3e8s_A           51 RQPERVLDLG-CG-EGWLLRALADR-GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL  127 (227)
T ss_dssp             TCCSEEEEET-CT-TCHHHHHHHTT-TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC
T ss_pred             CCCCEEEEeC-CC-CCHHHHHHHHC-CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh
Confidence            4678999998 44 46666667666 8899999954 677777776433333221111101111233459999865431 


Q ss_pred             -----CCccccccCCCCCcEEEEeCCC
Q 045248          143 -----IPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       143 -----~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                           ..+..+.+.|+++|+++.....
T Consensus       128 ~~~~~~~l~~~~~~L~pgG~l~~~~~~  154 (227)
T 3e8s_A          128 HQDIIELLSAMRTLLVPGGALVIQTLH  154 (227)
T ss_dssp             SSCCHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             hhhHHHHHHHHHHHhCCCeEEEEEecC
Confidence                 1266778899999999876643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	240
d1gu7a2	189	c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yea	2e-15
d1qora2	179	c.2.1.1 (A:113-291) Quinone oxidoreductase {Escher	2e-11
d1o8ca2	77	c.2.1.1 (A:116-192) Hypothetical protein YhdH {Esc	6e-11
d1pqwa_	183	c.2.1.1 (A:) Putative enoyl reductase domain of po	8e-11
d1vj1a2	187	c.2.1.1 (A:125-311) Putative zinc-binding alcohol	1e-10
d1o89a2	177	c.2.1.1 (A:116-292) Hypothetical protein YhdH {Esc	6e-09
d1xa0a2	176	c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Ba	2e-08
d1piwa2	168	c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase	9e-08
d1tt7a2	167	c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bac	2e-07
d1h2ba2	172	c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeo	2e-07
d1v3va2	182	c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehyd	3e-07
d1tt7a1	162	b.35.1.2 (A:2-127,A:295-330) Hypothetical protein	6e-07
d1yb5a2	174	c.2.1.1 (A:121-294) Quinone oxidoreductase {Human	9e-07
d1jvba2	170	c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeo	1e-06
d1uufa2	168	c.2.1.1 (A:145-312) Hypothetical protein YahK {Esc	7e-06
d1rjwa2	168	c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillu	2e-05
d1iz0a1	131	b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase	3e-05
d1kola1	201	b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog	5e-05
d1xa0a1	152	b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homo	1e-04
d1o89a1	146	b.35.1.2 (A:1-115,A:293-323) Hypothetical protein	2e-04
d2b69a1	312	c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1	3e-04
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	7e-04
d1llua2	166	c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudom	0.001
d2q46a1	252	c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (	0.001
d1kewa_	361	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	0.004

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 189

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 70.0 bits (170), Expect = 2e-15
 Identities = 34/193 (17%), Positives = 62/193 (32%), Gaps = 24/193 (12%)

Query: 34  VSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTH 93
           ++  +G+ + V  LTA+  LT    +       +   +    +  VG YA Q+ KL N +
Sbjct: 1   LTINQGATISVNPLTAYLMLTHYVKLT----PGKDWFIQNGGTSAVGKYASQIGKLLNFN 56

Query: 94  VTASCGARNIEFVK-----SLGADEVLDYKTPD-------GAALKSPSGRKYDAVIHCAT 141
             +    R            LGA +V+     +              SG +    ++C  
Sbjct: 57  SISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVG 116

Query: 142 GIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIP--------KRE 193
           G   +     L  NG ++         +T       F         +          K  
Sbjct: 117 GKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTS 176

Query: 194 NLDFLVKLVKEGK 206
            L+ ++   +EGK
Sbjct: 177 TLNQIIAWYEEGK 189

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 58.9 bits (141), Expect = 2e-11
 Identities = 37/183 (20%), Positives = 66/183 (36%), Gaps = 16/183 (8%)

Query: 34  VSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTH 93
           +S  + +   + GLT +  L ++  +K     +Q   L  AA+GGVG  A Q AK     
Sbjct: 1   ISFEQAAASFLKGLTVYYLLRKTYEIK---PDEQ--FLFHAAAGGVGLIACQWAKALGAK 55

Query: 94  VTASCGAR-NIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCATGIPWSTFEP 150
           +  + G     +     GA +V++Y+  D      +   G+K   V        W     
Sbjct: 56  LIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVGRDTWERSLD 115

Query: 151 NLGTNGKVIDIT------PGPSAMLTFALKKLTFSKKQLVPLLLIPKR--ENLDFLVKLV 202
            L   G ++          G +  +      L  ++  L   +   +   E  + L  L+
Sbjct: 116 CLQRRGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFSLI 175

Query: 203 KEG 205
             G
Sbjct: 176 ASG 178

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 77

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 55.0 bits (132), Expect = 6e-11
 Identities = 28/78 (35%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 35  SAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHV 94
            A +   +  AG TA   +   A        Q   I+VT ASGGVG  AV L       V
Sbjct: 2   DARKAMIIGTAGFTAMLCVM--ALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQV 59

Query: 95  TASCG-ARNIEFVKSLGA 111
            A  G     E++KSLGA
Sbjct: 60  VAVSGRESTHEYLKSLGA 77

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 183

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 57.0 bits (136), Expect = 8e-11
 Identities = 46/184 (25%), Positives = 75/184 (40%), Gaps = 16/184 (8%)

Query: 38  EGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAV-QLAKLGNTHVTA 96
           E +   VA LTA  +L +   +     G+   +L+ +A+GGVG  AV     +G    T 
Sbjct: 2   EAATFGVAYLTAWHSLCEVGRLS---PGE--RVLIHSATGGVGMAAVSIAKMIGARIYTT 56

Query: 97  SCGARNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGT 154
           +      E +  LG + V D ++ D     L+   G   D V++   G         L  
Sbjct: 57  AGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAGEAIQRGVQILAP 116

Query: 155 NGKVI-----DITPGPSAMLTFALKKLTFSKKQLVPLLLIPK---RENLDFLVKLVKEGK 206
            G+ I     D+    S  L    K  +FS   L   L +     R+ L  +++ V +GK
Sbjct: 117 GGRFIELGKKDVYADASLGLAALAKSASFSVVDLDLNLKLQPARYRQLLQHILQHVADGK 176

Query: 207 LKTV 210
           L+ +
Sbjct: 177 LEVL 180

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 187

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.6 bits (135), Expect = 1e-10
 Identities = 35/190 (18%), Positives = 65/190 (34%), Gaps = 21/190 (11%)

Query: 34  VSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKL---G 90
           +S   G+ + + GLT+   + +   +    +G  + ++V+ A+G  G  A Q+  L    
Sbjct: 2   LSYFLGA-IGMPGLTSLIGVQEKGHIS---AGSNQTMVVSGAAGACGSLAGQIGHLLGCS 57

Query: 91  NTHVTASCGARNIEFVKSLGADEVLDYKTPDGAA-LKSPSGRKYDAVIHCATGIPWSTFE 149
                     + +     LG D  ++YKT + A  L+       D       G   +T  
Sbjct: 58  RVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVGGDISNTVI 117

Query: 150 PNL-------------GTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLD 196
             +               N  V    P P A+     ++    ++  V          + 
Sbjct: 118 SQMNENSHIILCGQISQYNKDVPYPPPLPPAVEAIRKERNITRERFTVLNYKDKFEPGIL 177

Query: 197 FLVKLVKEGK 206
            L +  KEGK
Sbjct: 178 QLSQWFKEGK 187

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 177

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 51.8 bits (123), Expect = 6e-09
 Identities = 41/179 (22%), Positives = 60/179 (33%), Gaps = 10/179 (5%)

Query: 35  SAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLA-KLGNTH 93
            A +   +  AG TA   +   A        Q   I+VT ASGGVG  AV L  KLG   
Sbjct: 2   DARKAMIIGTAGFTAMLCVM--ALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQV 59

Query: 94  VTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLG 153
           V  S      E++KSLGA  VL       +  +    + +   I        +     + 
Sbjct: 60  VAVSGRESTHEYLKSLGASRVLPRDEFAES--RPLEKQVWAGAIDTVGDKVLAKVLAQMN 117

Query: 154 TNGKVIDITPGPSA-----MLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKL 207
             G V              ++ F L+ +       V      + +    LV  + E   
Sbjct: 118 YGGCVAACGLAGGFTLPTTVMPFILRNVRLQGVDSVMTPPERRAQAWQRLVADLPESFY 176

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 3/112 (2%)

Query: 35  SAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLA-KLGNTH 93
           +  E   +  AG TA  ++      +   + ++  +LVT A+GGVG  AV +  K G T 
Sbjct: 2   TLKEAMAIGTAGFTAALSIH--RLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTV 59

Query: 94  VTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPW 145
             ++  A   ++++ LGA EVL  +      ++    +++ A +    G   
Sbjct: 60  EASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGGRTL 111

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (114), Expect = 9e-08
 Identities = 34/186 (18%), Positives = 61/186 (32%), Gaps = 27/186 (14%)

Query: 31  PSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAK-L 89
           PS ++A     L   GLT +  L +  G         K + +    GG+G     ++K +
Sbjct: 2   PSHLAAP----LLCGGLTVYSPLVR-NGCGPG-----KKVGIVGL-GGIGSMGTLISKAM 50

Query: 90  GNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIH-CATGIPWSTF 148
           G      S  +R  E    +GAD  +          K         V     T I ++  
Sbjct: 51  GAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDIDFNIM 110

Query: 149 EPNLGTNGKVI------DITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLV 202
              +   G+++                      +++S         +   + L+ L+KLV
Sbjct: 111 PKAMKVGGRIVSISIPEQHEMLSLKPYGLKAVSISYS--------ALGSIKELNQLLKLV 162

Query: 203 KEGKLK 208
            E  +K
Sbjct: 163 SEKDIK 168

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 47.3 bits (111), Expect = 2e-07
 Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 3/104 (2%)

Query: 45  AGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLA-KLGNTHVTASCGARNI 103
           AG TA  ++      +   S ++ ++LVT A+GGVG  AV +  K G   V ++      
Sbjct: 4   AGFTAALSVH--RLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAA 61

Query: 104 EFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWST 147
           +++K LGA EV+  +      LK+ S +++   +    G   ++
Sbjct: 62  DYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGKQLAS 105

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 47.2 bits (111), Expect = 2e-07
 Identities = 42/179 (23%), Positives = 71/179 (39%), Gaps = 12/179 (6%)

Query: 32  SEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQ--LAKL 89
           S     E + L  AG+TA++A+ ++A     G+      +     GG+GH AVQ      
Sbjct: 2   SREKLVEMAPLADAGITAYRAVKKAARTLYPGA-----YVAIVGVGGLGHIAVQLLKVMT 56

Query: 90  GNTHVTASCGARNIEFVKSLGADEVLDYKTPDGA-ALKSPSGRKYDAVIHCATGIPWSTF 148
             T +        ++  + LGAD V+D +       ++   GR  +  +          +
Sbjct: 57  PATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQATVDY 116

Query: 149 EPN-LGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGK 206
            P  LG  G++I +  G    L F   ++  S+       L+     L  LV L  +GK
Sbjct: 117 TPYLLGRMGRLIIV--GYGGELRFPTIRVISSEVSFEG-SLVGNYVELHELVTLALQGK 172

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

 Score = 47.0 bits (110), Expect = 3e-07
 Identities = 52/186 (27%), Positives = 79/186 (42%), Gaps = 20/186 (10%)

Query: 34  VSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTH 93
           +S A G+ + + GLTA+  L +  GVK    G+   +LV+AA+G VG    Q+AKL    
Sbjct: 3   LSLALGT-IGMPGLTAYFGLLEVCGVK---GGE--TVLVSAAAGAVGSVVGQIAKLKGCK 56

Query: 94  VTASCG-ARNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCATGIPWSTFEP 150
           V  + G    I ++K +G D   +YKT +    ALK  S   YD       G   +T   
Sbjct: 57  VVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTVLS 116

Query: 151 NLGTNGKVI-----------DITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLV 199
            +   GK+            D  P   +  +   K+L      +       + + L  L+
Sbjct: 117 QMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALRDLM 176

Query: 200 KLVKEG 205
           K V EG
Sbjct: 177 KWVLEG 182

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 162

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 45.6 bits (107), Expect = 6e-07
 Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 9/86 (10%)

Query: 1   MCNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVK 60
           +            GGL+E+A       V  P  +S  E     +  +   +         
Sbjct: 86  VIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVDQLLTIVDREVS------L 139

Query: 61  LDGSGQQKNILVTAASGGVGHYAVQL 86
            +  G  K+IL     G V    V+L
Sbjct: 140 EETPGALKDILQNRIQGRV---IVKL 162

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 9e-07
 Identities = 38/175 (21%), Positives = 68/175 (38%), Gaps = 11/175 (6%)

Query: 35  SAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQ-LAKLGNTH 93
              +G+ + +   TA++AL  SA VK   +G+  ++LV  ASGGVG  A Q     G   
Sbjct: 2   DFKQGAAIGIPYFTAYRALIHSACVK---AGE--SVLVHGASGGVGLAACQIARAYGLKI 56

Query: 94  VTASCGARNIEFVKSLGADEVLDYKTPDGAA--LKSPSGRKYDAVIHCATGIPWSTFEPN 151
           +  +      + V   GA EV +++  +      K    +  D +I     +  S     
Sbjct: 57  LGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSL 116

Query: 152 LGTNGKVIDITPGPSAMLTFALKKLTFSKKQLV-PLLLIPKRENLDFLVKLVKEG 205
           L   G+VI +  G    +    +     +  ++   L    +E        ++ G
Sbjct: 117 LSHGGRVIVV--GSRGTIEINPRDTMAKESSIIGVTLFSSTKEEFQQYAAALQAG 169

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 45.5 bits (106), Expect = 1e-06
 Identities = 40/176 (22%), Positives = 70/176 (39%), Gaps = 11/176 (6%)

Query: 35  SAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHV 94
           +A E + L  +G+T ++A+ + A +    +     +LV  A GG+G  AVQ+AK  +   
Sbjct: 2   NAVEAAPLTCSGITTYRAVRK-ASLDPTKT-----LLVVGAGGGLGTMAVQIAKAVSGAT 55

Query: 95  TASCGARNIE--FVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCATGIPWSTFEP 150
                 R       K  GAD V++    D      +    +  DAVI         +  P
Sbjct: 56  IIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYP 115

Query: 151 NLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGK 206
                     +     A L +    +T S+ Q V   L+  + +   +++L + GK
Sbjct: 116 KALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVG-SLVGNQSDFLGIMRLAEAGK 170

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 42.6 bits (99), Expect = 7e-06
 Identities = 28/175 (16%), Positives = 59/175 (33%), Gaps = 11/175 (6%)

Query: 33  EVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT 92
           +   A  + L  AG+T +  L           G+   + V    G           +G  
Sbjct: 3   QEQLAAVAPLLCAGITTYSPLRH-WQAG---PGK--KVGVVGIGGLGHMGIKLAHAMGAH 56

Query: 93  HVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCA-TGIPWSTFEPN 151
            V  +      E  K+LGADEV++ +  D  A      + +D +++          F   
Sbjct: 57  VVAFTTSEAKREAAKALGADEVVNSRNADEMAAH---LKSFDFILNTVAAPHNLDDFTTL 113

Query: 152 LGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGK 206
           L  +G +  +    +   +  +  L   ++ +   ++    E  + ++    E  
Sbjct: 114 LKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIPETQE-MLDFCAEHG 167

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 41.6 bits (96), Expect = 2e-05
 Identities = 37/183 (20%), Positives = 60/183 (32%), Gaps = 25/183 (13%)

Query: 35  SAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHV 94
           S  E + +  AG+T ++AL    G K    G+   + +    G           +G   V
Sbjct: 2   SFEEAAPIFCAGVTTYKALKV-TGAK---PGE--WVAIYGIGGLGHVAVQYAKAMGLNVV 55

Query: 95  TASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLG- 153
               G   +E  K LGAD V++    D A           A +  A       F+     
Sbjct: 56  AVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVS--KPAFQSAYNS 113

Query: 154 --------TNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEG 205
                     G   +  P P         K+  S        ++  R++L   ++   EG
Sbjct: 114 IRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIGS--------IVGTRKDLQEALQFAAEG 165

Query: 206 KLK 208
           K+K
Sbjct: 166 KVK 168

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 131

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 40.2 bits (93), Expect = 3e-05
 Identities = 10/57 (17%), Positives = 15/57 (26%)

Query: 1   MCNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSA 57
           +    R       GGLAE     + + +  P                 A +AL    
Sbjct: 66  VVEGRRYAALVPQGGLAERVAVPKGALLPLPEGRPVVGPVFPFAEAEAAFRALLDRG 122

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 40.6 bits (94), Expect = 5e-05
 Identities = 12/87 (13%), Positives = 24/87 (27%), Gaps = 13/87 (14%)

Query: 5   WRIDVSHNGGGLAEFAV--AKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLD 62
             +D+    GG AE+ +    + + +  P    A E   +         +L   A     
Sbjct: 123 GYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGVQVISLDD-APRGYG 181

Query: 63  GSGQQKNILVTAASGGVGHYAVQLAKL 89
                        +G    + +   K 
Sbjct: 182 EFD----------AGVPKKFVIDPHKT 198

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 152

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 8/74 (10%)

Query: 1   MCNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVK 60
           +   + I V+H GG  +E+A       V  P  +       + +A L           ++
Sbjct: 87  IATGYEIGVTHFGGY-SEYARLHGEWLVPLPKGLER-IAQEISLAELPQALKRILRGELR 144

Query: 61  LDGSGQQKNILVTA 74
               G+   ++  A
Sbjct: 145 ----GR--TVVRLA 152

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 146

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 38.7 bits (89), Expect = 2e-04
 Identities = 16/48 (33%), Positives = 17/48 (35%)

Query: 14  GGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKL 61
           GGLAE A  K    VA P   +A E S              Q  G  L
Sbjct: 96  GGLAEQARVKGDWLVAMPQGQAAKEISLSEAPNFAEAIINNQIQGRTL 143

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 7/87 (8%)

Query: 68  KNILVTAASGGVG-HYAVQLAKLGNT-HVTASCGARNIEFVKSLGADEVLDYKTPDGAAL 125
           K IL+T  +G VG H   +L   G+   V  +        V+     E  +    D   +
Sbjct: 2   KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHD---V 58

Query: 126 KSPSGRKYDAVIHCA--TGIPWSTFEP 150
             P   + D + H A     P   + P
Sbjct: 59  VEPLYIEVDQIYHLASPASPPNYMYNP 85

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 7e-04
 Identities = 8/62 (12%), Positives = 17/62 (27%), Gaps = 2/62 (3%)

Query: 1   MCNLWRIDVSHNGG--GLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAG 58
                   + H  G    +E+ V  + S       +   E     ++    ++A      
Sbjct: 128 RFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEINKAFELMHS 187

Query: 59  VK 60
            K
Sbjct: 188 GK 189

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 30/174 (17%), Positives = 62/174 (35%), Gaps = 11/174 (6%)

Query: 34  VSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKL-GNT 92
           V  AE + +  AG+T ++ L Q    +    GQ   + ++    G+GH AVQ A+  G  
Sbjct: 1   VEFAEIAPILCAGVTVYKGLKQ-TNAR---PGQ--WVAISGIG-GLGHVAVQYARAMGLH 53

Query: 93  HVTASCGARNIEFVKSLGADEVLDY-KTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPN 151
                     +E  + LGA   ++  +     A++   G  +  ++   +   +      
Sbjct: 54  VAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVSNSAFGQAIGM 113

Query: 152 LGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEG 205
               G +  +   P       +  +      +    ++  R +L   +    EG
Sbjct: 114 ARRGGTIA-LVGLPPGDFPTPIFDVVLKGLHIAG-SIVGTRADLQEALDFAGEG 165

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 36.7 bits (83), Expect = 0.001
 Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 2/85 (2%)

Query: 68  KNILVTAASGGVG-HYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALK 126
             +LVT ASG  G     +L +  +    A    R+ +  + +G +  +       A   
Sbjct: 4   PTVLVTGASGRTGQIVYKKLKEGSD-KFVAKGLVRSAQGKEKIGGEADVFIGDITDADSI 62

Query: 127 SPSGRKYDAVIHCATGIPWSTFEPN 151
           +P+ +  DA++   + +P      +
Sbjct: 63  NPAFQGIDALVILTSAVPKMKPGFD 87

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

 Score = 35.5 bits (81), Expect = 0.004
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 10/92 (10%)

Query: 69  NILVTAASGGVG-HYAVQLAKLGNTHVTA---SCGARNIEFVKSLGADEVLDYKTPD--- 121
            IL+T  +G +G      + K     V        A N+E +  +      +++  D   
Sbjct: 2   KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICD 61

Query: 122 -GAALKSPSGRKYDAVIHCA--TGIPWSTFEP 150
                +     + DAV+H A  + +  S   P
Sbjct: 62  SAEITRIFEQYQPDAVMHLAAESHVDRSITGP 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	240
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.97
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.97
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.96
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.96
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.96
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.96
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.95
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.95
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.95
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.95
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.95
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.95
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.95
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.95
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.95
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.94
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.94
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.94
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.94
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.94
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.94
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.93
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.93
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.93
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.93
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.93
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.93
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.89
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.68
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.18
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.1
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	98.99
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	98.95
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	98.91
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	98.88
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	98.88
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	98.86
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	98.84
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	98.83
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	98.79
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	98.64
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	98.57
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	98.51
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	98.42
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	98.34
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	98.32
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	98.27
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	98.16
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	98.15
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.07
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.01
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.93
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.85
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	97.72
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	97.62
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.6
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	97.57
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.55
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	97.52
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.52
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	97.51
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.51
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	97.49
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	97.47
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.45
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	97.44
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	97.43
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	97.42
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	97.41
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.4
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	97.37
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	97.36
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	97.36
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	97.35
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	97.33
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	97.33
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	97.31
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	97.29
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	97.29
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	97.28
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	97.28
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	97.27
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.26
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	97.25
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	97.25
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	97.22
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	97.2
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	97.18
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	97.17
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	97.16
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	97.15
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	97.13
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	97.13
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.11
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.09
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.09
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.08
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	97.07
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	97.05
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	97.05
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	97.04
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.04
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.03
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	97.0
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	96.97
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	96.97
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	96.97
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.94
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	96.9
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	96.89
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	96.88
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	96.87
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	96.85
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.84
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	96.83
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	96.82
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	96.81
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	96.81
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	96.78
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	96.77
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	96.76
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	96.74
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	96.74
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.74
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	96.73
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	96.72
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.71
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	96.71
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	96.7
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	96.67
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	96.64
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.63
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	96.63
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	96.61
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	96.61
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	96.6
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	96.57
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	96.49
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.49
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	96.48
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.47
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.42
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	96.41
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.4
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	96.37
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	96.37
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	96.34
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	96.34
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	96.32
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	96.3
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	96.25
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.24
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	96.21
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.2
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.17
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	96.15
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	96.12
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	96.09
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	96.07
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.02
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	96.02
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.02
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	95.99
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	95.98
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.97
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	95.97
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	95.95
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.95
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.93
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	95.93
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	95.75
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	95.73
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	95.67
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	95.67
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.65
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.65
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	95.62
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	95.55
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	95.54
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	95.53
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	95.52
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	95.49
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	95.48
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	95.47
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.42
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.4
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	95.39
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.37
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	95.36
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	95.34
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	95.28
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	95.27
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	95.12
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.1
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	95.1
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	95.07
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.06
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.05
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.02
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	94.99
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	94.98
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	94.98
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.97
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.96
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	94.94
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	94.89
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.88
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	94.88
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	94.84
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.81
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	94.81
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	94.8
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.79
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	94.74
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	94.71
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.66
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	94.64
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.62
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	94.59
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	94.52
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.48
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	94.46
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.41
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.39
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	94.37
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	94.37
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.36
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	94.3
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	94.25
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	94.24
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	94.2
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	94.18
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	94.17
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	94.07
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.04
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	93.98
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	93.98
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	93.98
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	93.97
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	93.91
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	93.89
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	93.86
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	93.85
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	93.85
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	93.84
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	93.84
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	93.83
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	93.74
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	93.71
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	93.7
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	93.69
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	93.68
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	93.64
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	93.62
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	93.56
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	93.54
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	93.46
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	93.46
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	93.44
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	93.28
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	93.25
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	93.24
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.22
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	93.14
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	93.12
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	93.11
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.11
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	93.06
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.03
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	92.77
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	92.73
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	92.73
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	92.7
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	92.68
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	92.6
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	92.52
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	92.48
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	92.42
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	92.37
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.35
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	92.35
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	92.24
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	92.23
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	92.22
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	92.16
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	92.06
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	91.97
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	91.94
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	91.91
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	91.9
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	91.89
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	91.89
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	91.8
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	91.72
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	91.59
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.44
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	91.43
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	91.35
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	91.33
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	91.32
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	91.32
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	91.13
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	91.01
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	90.92
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	90.89
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	90.82
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	90.74
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	90.72
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	90.69
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	90.61
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	90.58
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	90.56
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	90.22
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	90.13
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	90.11
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	90.01
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	89.86
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	89.86
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	89.8
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	89.74
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	89.55
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	89.19
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	89.14
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	89.12
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	89.02
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	88.95
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	88.87
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	88.87
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	88.81
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	88.77
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	88.62
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	88.61
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	88.56
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	88.54
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	88.46
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	88.38
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	88.35
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	88.27
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	88.17
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	88.03
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	87.96
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	87.93
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	87.9
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	87.87
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	87.71
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	87.53
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	87.46
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	87.34
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	87.26
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	87.01
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	86.89
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	86.87
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	86.87
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	86.73
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	86.67
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	86.64
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	86.62
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	86.52
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	86.4
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	86.1
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	85.82
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	85.8
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	85.78
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	85.69
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	85.56
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	85.22
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	85.14
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	84.85
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	84.84
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	84.14
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	84.04
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	83.99
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	83.99
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	83.88
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	83.87
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	83.41
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	83.28
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	83.12
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	83.06
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	83.05
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	82.59
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	82.56
d2ax3a2	211	Hypothetical protein TM0922, N-terminal domain {Th	82.51
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	82.42
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	82.38
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	82.04
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	81.9
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	81.67
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	81.62
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	81.5
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	81.2
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	81.11
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	81.05
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	80.88
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	80.35
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	80.02

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.97  E-value=4e-32  Score=197.92  Aligned_cols=170  Identities=21%  Similarity=0.252  Sum_probs=137.9

Q ss_pred             CChhhhhhhchHHHHHHHHHH---hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHhc
Q 045248           34 VSAAEGSGLPVAGLTAHQALT---QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSL  109 (240)
Q Consensus        34 ~~~~~aa~~~~~~~ta~~~l~---~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~  109 (240)
                      +|++|||+++++++|||+++.   +....     ++|++|||+||+|++|.+++|+|+..|++|+++++ +++.+.++++
T Consensus         1 lS~~eAAal~~aglTA~~a~~~L~~~g~~-----~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~l   75 (176)
T d1xa0a2           1 LTLKEAMAIGTAGFTAALSIHRLEEHGLT-----PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVL   75 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCC-----GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHT
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHHhCCC-----CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhc
Confidence            689999999999999997764   45666     78999999999999999999999999999999997 4899999999


Q ss_pred             CCCEEEeCCCCccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchHHHHHHHhhheeccceeeeEEE-
Q 045248          110 GADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLL-  188 (240)
Q Consensus       110 g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~-  188 (240)
                      |+++++++++........+.++++|+|||++|++.+..++++|+++|+++.+|.......+++...+.++++++.|... 
T Consensus        76 Ga~~vi~~~~~~~~~~~~~~~~gvD~vid~vgg~~~~~~l~~l~~~Griv~~G~~~g~~~~~~~~~~~~k~~~i~Gv~~~  155 (176)
T d1xa0a2          76 GAKEVLAREDVMAERIRPLDKQRWAAAVDPVGGRTLATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGIDSV  155 (176)
T ss_dssp             TCSEEEECC---------CCSCCEEEEEECSTTTTHHHHHHTEEEEEEEEECSCCSSSCCCCCSHHHHHTTCEEEECCSS
T ss_pred             ccceeeecchhHHHHHHHhhccCcCEEEEcCCchhHHHHHHHhCCCceEEEeecccCcccCCCHHHHHHCCcEEEEEeCC
Confidence            9999999876555556677889999999999999999999999999999999987665566677778888999998632 


Q ss_pred             cCCHHHHHHHHHHHHCCceEE
Q 045248          189 IPKRENLDFLVKLVKEGKLKT  209 (240)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~  209 (240)
                      ....+...++++.++ ++++|
T Consensus       156 ~~~~~~~~~~~~~la-g~lkP  175 (176)
T d1xa0a2         156 YCPMDLRLRIWERLA-GDLKP  175 (176)
T ss_dssp             SCCHHHHHHHHHHHH-TTTCC
T ss_pred             cCCHHHHHHHHHHHh-cccCC
Confidence            334566777777664 55554

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-31  Score=196.33  Aligned_cols=165  Identities=22%  Similarity=0.303  Sum_probs=141.6

Q ss_pred             CChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCC
Q 045248           34 VSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGAD  112 (240)
Q Consensus        34 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~  112 (240)
                      +|++|||+++++++|||+++.+..++     ++|++|||+|++|++|++++|+|+.+|++|++++++ ++.+.++++|++
T Consensus         1 ls~~~AA~l~~~~~TA~~al~~~~~~-----~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~   75 (174)
T d1yb5a2           1 LDFKQGAAIGIPYFTAYRALIHSACV-----KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAH   75 (174)
T ss_dssp             SCHHHHTTTHHHHHHHHHHHHTTSCC-----CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHhCC-----CCCCEEEEEeccccccccccccccccCcccccccccccccccccccCcc
Confidence            68999999999999999999888888     899999999988999999999999999999999964 789999999999


Q ss_pred             EEEeCCCCc--cccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchHHHHHHHhhheeccceeeeEEE-c
Q 045248          113 EVLDYKTPD--GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLL-I  189 (240)
Q Consensus       113 ~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~-~  189 (240)
                      +++|+++.+  ....+.+.++++|+++|++|++.++.++++++++|+++.+|..+.  .+++...+..+++++.+++. .
T Consensus        76 ~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~g~~~~~~~~~~l~~~G~iv~~G~~~~--~~~~~~~~~~k~~~i~g~~~~~  153 (174)
T d1yb5a2          76 EVFNHREVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGSRGT--IEINPRDTMAKESSIIGVTLFS  153 (174)
T ss_dssp             EEEETTSTTHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHEEEEEEEEECCCCSC--EEECTHHHHTTTCEEEECCGGG
T ss_pred             cccccccccHHHHhhhhhccCCceEEeecccHHHHHHHHhccCCCCEEEEEecCCC--CCCCHHHHHHCCCEEEEEEecC
Confidence            999998877  233466788999999999998889999999999999999986543  23345566778889988764 3


Q ss_pred             CCHHHHHHHHHHHHCC
Q 045248          190 PKRENLDFLVKLVKEG  205 (240)
Q Consensus       190 ~~~~~~~~~~~~~~~~  205 (240)
                      ..+++++++.++++++
T Consensus       154 ~~~~~~~~~~~~l~~g  169 (174)
T d1yb5a2         154 STKEEFQQYAAALQAG  169 (174)
T ss_dssp             CCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            4577888888887764

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.96  E-value=9.1e-31  Score=193.56  Aligned_cols=170  Identities=23%  Similarity=0.278  Sum_probs=136.8

Q ss_pred             hhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEE
Q 045248           37 AEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVL  115 (240)
Q Consensus        37 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~  115 (240)
                      +|||+++++++|||+++.+.+++     ++|++|||+||+|++|++++|+|+.+|++|++++++ ++.+.++++|+++++
T Consensus         1 eeAA~l~~~~~TA~~al~~~~~~-----~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi   75 (183)
T d1pqwa_           1 NEAATFGVAYLTAWHSLCEVGRL-----SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVG   75 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCC-----CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEE
T ss_pred             CchhhhhHHHHHHHHHHHHHhCC-----CCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccc
Confidence            58999999999999999888888     899999999999999999999999999999999864 789999999999999


Q ss_pred             eCCCCc--cccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchHHHHHHHhhheeccceeeeEEEc----
Q 045248          116 DYKTPD--GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLI----  189 (240)
Q Consensus       116 ~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~----  189 (240)
                      ++++++  ....+.++++|+|++||++|++.++.++++++++|+++.+|..+.............++.++.++...    
T Consensus        76 ~~~~~~~~~~v~~~t~~~g~d~v~d~~g~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (183)
T d1pqwa_          76 DSRSVDFADEILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKKDVYADASLGLAALAKSASFSVVDLDLNLK  155 (183)
T ss_dssp             ETTCSTHHHHHHHHTTTCCEEEEEECCCTHHHHHHHHTEEEEEEEEECSCGGGTTTCEEEGGGGTTTCEEEECCHHHHHH
T ss_pred             cCCccCHHHHHHHHhCCCCEEEEEecccchHHHHHHHHhcCCCEEEEEccCCCCCCcccchHHHhCCcEEEEEEccceec
Confidence            988877  33456678899999999999988999999999999999998543322111111222344455444321    


Q ss_pred             ----CCHHHHHHHHHHHHCCceEEec
Q 045248          190 ----PKRENLDFLVKLVKEGKLKTVI  211 (240)
Q Consensus       190 ----~~~~~~~~~~~~~~~~~i~~~~  211 (240)
                          ..++.++++.+++++|+++|++
T Consensus       156 ~~~~~~~~~~~~v~~~i~~G~i~p~P  181 (183)
T d1pqwa_         156 LQPARYRQLLQHILQHVADGKLEVLP  181 (183)
T ss_dssp             HCHHHHHHHHHHHHHHHHTTSSCCCC
T ss_pred             cCHHHHHHHHHHHHHHHHCCCCceeC
Confidence                1145688999999999998743

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.96  E-value=9.4e-30  Score=185.81  Aligned_cols=165  Identities=26%  Similarity=0.348  Sum_probs=143.8

Q ss_pred             CChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeC-cccHHHHHhcCC
Q 045248           34 VSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCG-ARNIEFVKSLGA  111 (240)
Q Consensus        34 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~~g~  111 (240)
                      +|+.|||++++++.|||+++ +..++     +++++|+|+|++|++|++++|+++.+|+ +|+++++ ++++++++++|+
T Consensus         1 l~~~eAA~l~c~~~Ta~~al-~~~~~-----~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga   74 (170)
T d1jvba2           1 LNAVEAAPLTCSGITTYRAV-RKASL-----DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA   74 (170)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHTTC-----CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCC-----CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCC
Confidence            57899999999999999999 77888     8999999999889999999999999997 8888886 489999999999


Q ss_pred             CEEEeCCCCc--cccccCCCCCcccEEEeCCCCC-CccccccCCCCCcEEEEeCCCchHHHHHHHhhheeccceeeeEEE
Q 045248          112 DEVLDYKTPD--GAALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLL  188 (240)
Q Consensus       112 ~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~  188 (240)
                      ++++++++.+  ....+.+.++++|+++||+|++ .++.++++++++|+++.+|...+ +.+++...+.++++++.|++.
T Consensus        75 ~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~~-~~~~~~~~~~~k~i~i~Gs~~  153 (170)
T d1jvba2          75 DYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGA-DLHYHAPLITLSEIQFVGSLV  153 (170)
T ss_dssp             SEEEETTTSCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCC-CCCCCHHHHHHHTCEEEECCS
T ss_pred             ceeeccCCcCHHHHHHHHhhcccchhhhcccccchHHHhhhhhcccCCEEEEeccccC-ccccCHHHHHhCCcEEEEEec
Confidence            9999988776  3345667788999999999985 48999999999999999996543 345566777889999999874


Q ss_pred             cCCHHHHHHHHHHHHCCc
Q 045248          189 IPKRENLDFLVKLVKEGK  206 (240)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~  206 (240)
                       .++++++++++++++|+
T Consensus       154 -~~~~d~~~~l~lv~~GK  170 (170)
T d1jvba2         154 -GNQSDFLGIMRLAEAGK  170 (170)
T ss_dssp             -CCHHHHHHHHHHHHTTS
T ss_pred             -CCHHHHHHHHHHHHcCC
Confidence             68899999999999986

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=2.3e-29  Score=183.57  Aligned_cols=158  Identities=22%  Similarity=0.250  Sum_probs=125.1

Q ss_pred             CChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHhcCCC
Q 045248           34 VSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGAD  112 (240)
Q Consensus        34 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~  112 (240)
                      +|++|||++++++.|||+++ +..++     ++|++|||+|++|++|++++|+|+.+|++|+++++ +++.+.++++|++
T Consensus         1 ls~eeAA~l~~~~~TA~~al-~~~~~-----~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~   74 (171)
T d1iz0a2           1 LSPEEAAAFPVSFLTAYLAL-KRAQA-----RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAE   74 (171)
T ss_dssp             CCHHHHHTSHHHHHHHHHHH-HHTTC-----CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCS
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCC-----CCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccc
Confidence            68999999999999999999 56888     89999999998999999999999999999999996 5889999999999


Q ss_pred             EEEeCCCCccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchHHHHHHHhhheeccceeeeEEEc---
Q 045248          113 EVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLI---  189 (240)
Q Consensus       113 ~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~---  189 (240)
                      +++++.+..   .+.+.+.|+|+|||++| +.+..++++++++|+++.+|.......+++...+..+++++.+++..   
T Consensus        75 ~~i~~~~~~---~~~~~~~g~D~v~d~~G-~~~~~~~~~l~~~G~~v~~G~~~g~~~~~~~~~~~~k~~~i~g~~~~~~~  150 (171)
T d1iz0a2          75 EAATYAEVP---ERAKAWGGLDLVLEVRG-KEVEESLGLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFWLTPLL  150 (171)
T ss_dssp             EEEEGGGHH---HHHHHTTSEEEEEECSC-TTHHHHHTTEEEEEEEEEC-------CCCCTTHHHHTTCEEEECCHHHHT
T ss_pred             eeeehhhhh---hhhhccccccccccccc-hhHHHHHHHHhcCCcEEEEeCCCCCCCCccHHHHHHCCcEEEEEeCcChh
Confidence            999876422   23345678999999988 56899999999999999999765444455666777889999887542   


Q ss_pred             CCHHHHHHHHHH
Q 045248          190 PKRENLDFLVKL  201 (240)
Q Consensus       190 ~~~~~~~~~~~~  201 (240)
                      ..++.+++++..
T Consensus       151 ~~~~~~~~~~~~  162 (171)
T d1iz0a2         151 REGALVEEALGF  162 (171)
T ss_dssp             TCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHH
Confidence            233444444433

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=2.7e-29  Score=184.94  Aligned_cols=165  Identities=22%  Similarity=0.299  Sum_probs=131.6

Q ss_pred             CChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHhcCCC
Q 045248           34 VSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGAD  112 (240)
Q Consensus        34 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~  112 (240)
                      +|++|||+++++++|||+++.+..++     ++|++|||+||+|++|++++|+|+.+|++|+++++ +++++.++++|++
T Consensus         1 isfe~AA~~~~~~~TA~~al~~~~~l-----~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~   75 (179)
T d1qora2           1 ISFEQAAASFLKGLTVYYLLRKTYEI-----KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAW   75 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCC-----CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCC-----CCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCe
Confidence            58999999999999999999888888     89999999999999999999999999999999986 4889999999999


Q ss_pred             EEEeCCCCc--cccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchHHHHHH------Hhhheeccceee
Q 045248          113 EVLDYKTPD--GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFA------LKKLTFSKKQLV  184 (240)
Q Consensus       113 ~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~------~~~~~~~~~~i~  184 (240)
                      +++|+++++  ....+.+++.++|+++|++|++.+..++++++++|+++.++.........+      ...+.+++.++.
T Consensus        76 ~vi~~~~~d~~~~v~~~t~g~g~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~  155 (179)
T d1qora2          76 QVINYREEDLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQ  155 (179)
T ss_dssp             EEEETTTSCHHHHHHHHTTTCCEEEEEECSCGGGHHHHHHTEEEEEEEEECCCTTCCCCCBCTHHHHHTTSCEEECCCHH
T ss_pred             EEEECCCCCHHHHHHHHhCCCCeEEEEeCccHHHHHHHHHHHhcCCeeeecccccCCccccchhhhhccceEEEEeeEEe
Confidence            999998877  334566788999999999999999999999999999999885432221111      122333333343


Q ss_pred             eEEEcCCH----HHHHHHHHHHHCC
Q 045248          185 PLLLIPKR----ENLDFLVKLVKEG  205 (240)
Q Consensus       185 ~~~~~~~~----~~~~~~~~~~~~~  205 (240)
                      +..  ..+    +.++++++++++|
T Consensus       156 ~~~--~~~~~~~~~~~~l~~lv~~G  178 (179)
T d1qora2         156 GYI--TTREELTEASNELFSLIASG  178 (179)
T ss_dssp             HHC--CSHHHHHHHHHHHHHHHHTT
T ss_pred             eec--CCHHHHHHHHHHHHHHHHCc
Confidence            322  222    3456677787776

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=2.3e-28  Score=177.91  Aligned_cols=164  Identities=20%  Similarity=0.287  Sum_probs=135.7

Q ss_pred             CCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHhcCC
Q 045248           33 EVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGA  111 (240)
Q Consensus        33 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~  111 (240)
                      +.++.++|+++|+..|+|+++ +.+++     ++|++|+|+| +|++|++++|+|+.+|++++++++ +++++.++++|+
T Consensus         3 ~~~~a~~Apl~Cag~Tay~al-~~~~~-----~~G~~VlI~G-aG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGa   75 (168)
T d1uufa2           3 QEQLAAVAPLLCAGITTYSPL-RHWQA-----GPGKKVGVVG-IGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGA   75 (168)
T ss_dssp             GGGHHHHGGGGTHHHHHHHHH-HHTTC-----CTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC
T ss_pred             cccHHHHHHHHhHHHHHHHHH-HHhCC-----CCCCEEEEec-cchHHHHHHHHhhcccccchhhccchhHHHHHhccCC
Confidence            456788889999999999999 67888     9999999999 799999999999999998888775 588999999999


Q ss_pred             CEEEeCCCCccccccCCCCCcccEEEeCCCCC-CccccccCCCCCcEEEEeCCCchHHHHHHHhhheeccceeeeEEEcC
Q 045248          112 DEVLDYKTPDGAALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIP  190 (240)
Q Consensus       112 ~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~  190 (240)
                      +.++++.+.+..   ....+++|++||++|++ .+..++++++++|+++.+|........++...+.++++++.+++. .
T Consensus        76 d~~i~~~~~~~~---~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~l~~k~~~i~Gs~~-~  151 (168)
T d1uufa2          76 DEVVNSRNADEM---AAHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMI-G  151 (168)
T ss_dssp             SEEEETTCHHHH---HTTTTCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC-------CHHHHHTTTCEEEECCS-C
T ss_pred             cEEEECchhhHH---HHhcCCCceeeeeeecchhHHHHHHHHhcCCEEEEeccCCCCcccccHHHHHHCCcEEEEEee-c
Confidence            999998765422   12336899999999975 599999999999999999976665566677778889999999874 7


Q ss_pred             CHHHHHHHHHHHHCCce
Q 045248          191 KRENLDFLVKLVKEGKL  207 (240)
Q Consensus       191 ~~~~~~~~~~~~~~~~i  207 (240)
                      +.++++++++++++++|
T Consensus       152 ~~~d~~e~l~l~a~~~I  168 (168)
T d1uufa2         152 GIPETQEMLDFCAEHGI  168 (168)
T ss_dssp             CHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHcCC
Confidence            88999999999988764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.7e-28  Score=178.56  Aligned_cols=164  Identities=20%  Similarity=0.294  Sum_probs=136.8

Q ss_pred             CChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHhcCCC
Q 045248           34 VSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGAD  112 (240)
Q Consensus        34 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~  112 (240)
                      ++.+.||++.|++.|+|+++ +..++     ++|++|+|+| +|++|++++|+++.+|++|+++++ ++|++.++++|++
T Consensus         1 lp~e~AApl~cag~Ta~~al-~~~~~-----~~g~~vlI~G-aG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~   73 (168)
T d1piwa2           1 IPSHLAAPLLCGGLTVYSPL-VRNGC-----GPGKKVGIVG-LGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGAD   73 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHTTC-----STTCEEEEEC-CSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCc-----CCCCEEEEEC-CCCcchhHHHHhhhccccccccccchhHHHHhhccCCc
Confidence            35677899999999999999 57788     8999999999 699999999999999999999885 5899999999999


Q ss_pred             EEEeCCCCccccccCCCCCcccEEEeCCCCC---CccccccCCCCCcEEEEeCCCchHHHHHHHhhheeccceeeeEEEc
Q 045248          113 EVLDYKTPDGAALKSPSGRKYDAVIHCATGI---PWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLI  189 (240)
Q Consensus       113 ~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~---~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~  189 (240)
                      +++++.+.....  ....+++|+++||+|..   .+..++++++++|+++.+|..... ..++...+.++++++.|++. 
T Consensus        74 ~~i~~~~~~~~~--~~~~~~~d~vi~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~-~~~~~~~~~~k~~~i~Gs~~-  149 (168)
T d1piwa2          74 HYIATLEEGDWG--EKYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQH-EMLSLKPYGLKAVSISYSAL-  149 (168)
T ss_dssp             EEEEGGGTSCHH--HHSCSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCCSS-CCEEECGGGCBSCEEEECCC-
T ss_pred             EEeeccchHHHH--HhhhcccceEEEEecCCccchHHHHHHHhhccceEEEecccccc-ccccHHHHHhCCcEEEEEee-
Confidence            999876543211  11235799999998853   377899999999999999965442 34566677889999999764 


Q ss_pred             CCHHHHHHHHHHHHCCceE
Q 045248          190 PKRENLDFLVKLVKEGKLK  208 (240)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~  208 (240)
                      .++++++++++++++|+|+
T Consensus       150 g~~~~~~e~l~li~~gkIk  168 (168)
T d1piwa2         150 GSIKELNQLLKLVSEKDIK  168 (168)
T ss_dssp             CCHHHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHhCCCC
Confidence            6899999999999999875

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.95  E-value=8.7e-29  Score=181.08  Aligned_cols=167  Identities=22%  Similarity=0.208  Sum_probs=138.2

Q ss_pred             CChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeC-cccHHHHHhcCC
Q 045248           34 VSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCG-ARNIEFVKSLGA  111 (240)
Q Consensus        34 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~~g~  111 (240)
                      ++++.+++++|++.|||+++.+..++     ++|++|+|+| +|++|++++|+++.+|+ +|+++++ +++++.++++|+
T Consensus         1 vP~e~aapl~ca~~Ta~~a~~~~~~~-----~~g~~VlI~G-~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga   74 (174)
T d1f8fa2           1 VPIELLGPLGCGIQTGAGACINALKV-----TPASSFVTWG-AGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA   74 (174)
T ss_dssp             SCGGGTGGGGTHHHHHHHHHHTTTCC-----CTTCEEEEES-CSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC
T ss_pred             CCHHHHHHHhhHHHHHHHHHHHhhCC-----CCCCEEEEeC-CCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCC
Confidence            46788999999999999998888888     9999999999 69999999999999999 5566665 479999999999


Q ss_pred             CEEEeCCCCc-cccccCCCCCcccEEEeCCCCC-CccccccCCCCCcEEEEeCCCc-hHHHHHHHhhheeccceeeeEEE
Q 045248          112 DEVLDYKTPD-GAALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTNGKVIDITPGP-SAMLTFALKKLTFSKKQLVPLLL  188 (240)
Q Consensus       112 ~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~g~~~-~~~~~~~~~~~~~~~~~i~~~~~  188 (240)
                      ++++++++++ ...+++..++++|+||||+|++ .++.++++++++|+++.+|... ....+++...+.+++++++|++.
T Consensus        75 ~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~k~~~i~Gs~~  154 (174)
T d1f8fa2          75 THVINSKTQDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVE  154 (174)
T ss_dssp             SEEEETTTSCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSG
T ss_pred             eEEEeCCCcCHHHHHHHHcCCCCcEEEEcCCcHHHHHHHHhcccCceEEEEEeecCCCcccccCHHHHHHCCCEEEEEEe
Confidence            9999988776 3334333445999999999985 4889999999999999999643 33345567778889999999764


Q ss_pred             c--CCHHHHHHHHHHHHCCc
Q 045248          189 I--PKRENLDFLVKLVKEGK  206 (240)
Q Consensus       189 ~--~~~~~~~~~~~~~~~~~  206 (240)
                      .  ..+++++++++++++|+
T Consensus       155 g~~~~~~~~~~~~~l~~~Gk  174 (174)
T d1f8fa2         155 GSGSPKKFIPELVRLYQQGK  174 (174)
T ss_dssp             GGSCHHHHHHHHHHHHHTTS
T ss_pred             cCCChHHHHHHHHHHHHcCC
Confidence            2  22678999999999986

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.95  E-value=2.8e-28  Score=178.15  Aligned_cols=162  Identities=26%  Similarity=0.306  Sum_probs=139.3

Q ss_pred             hhhhhhhchHHHHHHHHHHhhh-CCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHHHHHhcCCC
Q 045248           36 AAEGSGLPVAGLTAHQALTQSA-GVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNIEFVKSLGAD  112 (240)
Q Consensus        36 ~~~aa~~~~~~~ta~~~l~~~~-~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~  112 (240)
                      +.++|++++++.|||+++.+.. .+     ++|++|+|+| +|++|++++|+++.+|+ +|++++++ +|++.++++|++
T Consensus         6 l~eaA~l~~~~~Ta~~al~~~~~~~-----~~g~~vli~G-aG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~   79 (172)
T d1h2ba2           6 LVEMAPLADAGITAYRAVKKAARTL-----YPGAYVAIVG-VGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGAD   79 (172)
T ss_dssp             HHHTGGGGTHHHHHHHHHHHHHTTC-----CTTCEEEEEC-CSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCS
T ss_pred             HHHHhHHHhHHHHHHHHHHHhhhcc-----CCCCEEEEeC-CChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccc
Confidence            5788999999999999997655 36     8999999999 79999999999999998 77777764 899999999999


Q ss_pred             EEEeCCCCc-cccccCCCCCcccEEEeCCCCC-CccccccCCCCCcEEEEeCCCchHHHHHHHhhheeccceeeeEEEcC
Q 045248          113 EVLDYKTPD-GAALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIP  190 (240)
Q Consensus       113 ~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~  190 (240)
                      ++++++++. ....+.+.+.++|++||++|+. .++.++++++++|+++.+|...+  .+++...+.+++++++|++. .
T Consensus        80 ~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~~--~~~~~~~l~~k~~~i~Gs~~-~  156 (172)
T d1h2ba2          80 HVVDARRDPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYGGE--LRFPTIRVISSEVSFEGSLV-G  156 (172)
T ss_dssp             EEEETTSCHHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEECCCSSC--CCCCHHHHHHTTCEEEECCS-C
T ss_pred             eeecCcccHHHHHHHhhCCCCceEEEEecCcchHHHHHHHHHhCCCEEEEEeCccc--ccCCHHHHHhCCcEEEEEEe-c
Confidence            999987655 3455677888999999999985 59999999999999999996543  34556678889999999874 6


Q ss_pred             CHHHHHHHHHHHHCCc
Q 045248          191 KRENLDFLVKLVKEGK  206 (240)
Q Consensus       191 ~~~~~~~~~~~~~~~~  206 (240)
                      ++++++++++++++|+
T Consensus       157 ~~~d~~~~l~l~~~GK  172 (172)
T d1h2ba2         157 NYVELHELVTLALQGK  172 (172)
T ss_dssp             CHHHHHHHHHHHHTTS
T ss_pred             CHHHHHHHHHHHHcCC
Confidence            8889999999999986

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.95  E-value=8.7e-29  Score=182.48  Aligned_cols=161  Identities=27%  Similarity=0.354  Sum_probs=133.2

Q ss_pred             hhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCC
Q 045248           40 SGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYK  118 (240)
Q Consensus        40 a~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~  118 (240)
                      ++++++++|||+++.+..++     ++|++|||+||+|++|++++|+++..|++|++++++ ++.++++++|++++++++
T Consensus         8 ~~lg~~glTA~~al~~~~~v-----~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~   82 (182)
T d1v3va2           8 GTIGMPGLTAYFGLLEVCGV-----KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYK   82 (182)
T ss_dssp             TTTSHHHHHHHHHHHTTTCC-----CSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETT
T ss_pred             HHHhhHHHHHHHHHHHHhCC-----CCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccc
Confidence            56788899999999999999     999999999999999999999999999999999965 789999999999999988


Q ss_pred             CCcc--ccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCch------HHHHHHHhhheeccceeeeEEEc-
Q 045248          119 TPDG--AALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPS------AMLTFALKKLTFSKKQLVPLLLI-  189 (240)
Q Consensus       119 ~~~~--~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~------~~~~~~~~~~~~~~~~i~~~~~~-  189 (240)
                      +++.  ...+.+.+.|+|+|||++|++.++.++++++++|+++.+|..+.      .+..+....+.+++.++.+++.. 
T Consensus        83 ~~~~~~~~~~~~~~~Gvd~v~D~vG~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~l~~k~~ti~g~~~~~  162 (182)
T d1v3va2          83 TVNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYR  162 (182)
T ss_dssp             SCSCHHHHHHHHCTTCEEEEEESSCHHHHHHHGGGEEEEEEEEECCCGGGTTCTTSCCBCCCHHHHHHTTCEEEECCGGG
T ss_pred             cccHHHHHHHHhhcCCCceeEEecCchhhhhhhhhccCCCeEEeecceeeccccccCCCCcchHHHhhcCcEEEEEEEec
Confidence            7762  34566788999999999999889999999999999999985321      11223345567788888887542 


Q ss_pred             CC----HHHHHHHHHHHHCC
Q 045248          190 PK----RENLDFLVKLVKEG  205 (240)
Q Consensus       190 ~~----~~~~~~~~~~~~~~  205 (240)
                      ..    .+.++++++++++|
T Consensus       163 ~~~~~~~~~~~~l~~~i~~G  182 (182)
T d1v3va2         163 WQGDVREKALRDLMKWVLEG  182 (182)
T ss_dssp             CCHHHHHHHHHHHHHHHHTT
T ss_pred             cChHHHHHHHHHHHHHHhCc
Confidence            22    34577888888775

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.95  E-value=1.5e-28  Score=179.49  Aligned_cols=166  Identities=19%  Similarity=0.189  Sum_probs=134.5

Q ss_pred             CChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHHHHHhcCC
Q 045248           34 VSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNIEFVKSLGA  111 (240)
Q Consensus        34 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~  111 (240)
                      +|+++|+++++.+.|+|+++ +.+++     ++|++|+|+| +|++|++++|+++.+|+ +|++++++ +|++.++++|+
T Consensus         1 ip~e~A~~l~~~~~ta~~a~-~~a~~-----~~g~~VlI~G-aG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa   73 (174)
T d1jqba2           1 MPLENAVMITDMMTTGFHGA-ELADI-----EMGSSVVVIG-IGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGA   73 (174)
T ss_dssp             SCHHHHHTTTTHHHHHHHHH-HHTTC-----CTTCCEEEEC-CSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTC
T ss_pred             CCHHHHHHhhhHHHHHHHHH-HHhCC-----CCCCEEEEEc-CCcchhhhhhhhhcccccccccccchhhhHHHHHhhCc
Confidence            57899999999999999998 77888     9999999998 79999999999999998 89999865 78999999999


Q ss_pred             CEEEeCCCCc--cccccCCCCCcccEEEeCCCCCC-ccccccCCCCCcEEEEeCCCchH-HHHHHH--hhheeccceeee
Q 045248          112 DEVLDYKTPD--GAALKSPSGRKYDAVIHCATGIP-WSTFEPNLGTNGKVIDITPGPSA-MLTFAL--KKLTFSKKQLVP  185 (240)
Q Consensus       112 ~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~g~~~~~-~~~~~~--~~~~~~~~~i~~  185 (240)
                      ++++++++++  ....+.+++.|+|++|||+|++. ++.++++++++|+++.+|..... ..+++.  -...++++++.+
T Consensus        74 ~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~i~g  153 (174)
T d1jqba2          74 TDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHGSGDALLIPRVEWGCGMAHKTIKG  153 (174)
T ss_dssp             SEEECGGGSCHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSSSEEEEETTTTGGGTBCCEEEE
T ss_pred             cccccccchhHHHHHHHHhhccCcceEEEccCCHHHHHHHHHHHhcCCEEEEEeecCCCCcCcCcHhHHHHHhCccEEEE
Confidence            9999988766  23456678899999999999855 89999999999999999964321 111111  122346678887


Q ss_pred             EEEcCCHHHHHHHHHHHHCCc
Q 045248          186 LLLIPKRENLDFLVKLVKEGK  206 (240)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~  206 (240)
                      ......+..++.+.+++++|+
T Consensus       154 ~~~~~~r~~~e~l~~li~~gk  174 (174)
T d1jqba2         154 GLCPGGRLRAERLRDMVVYNR  174 (174)
T ss_dssp             BCCCCHHHHHHHHHHHHHTTS
T ss_pred             ecCCCCcccHHHHHHHHHcCC
Confidence            764344556788889998875

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=1.9e-28  Score=178.08  Aligned_cols=162  Identities=20%  Similarity=0.252  Sum_probs=134.9

Q ss_pred             CChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCC
Q 045248           34 VSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGAD  112 (240)
Q Consensus        34 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~  112 (240)
                      ++++++|+++|++.|||+++ +.+++     ++|++|+|+| +|++|++++|++|.+|++|+++++. ++++.++++|++
T Consensus         1 v~f~~aA~l~ca~~Ta~~al-~~~~~-----~~g~~VlV~G-aG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~   73 (166)
T d1llua2           1 VEFAEIAPILCAGVTVYKGL-KQTNA-----RPGQWVAISG-IGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGAS   73 (166)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTC-----CTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCC-----CCCCEEEEee-ccccHHHHHHHHHHcCCccceecchhhHHHhhhccCcc
Confidence            57999999999999999999 66888     8999999999 7999999999999999999999975 799999999999


Q ss_pred             EEEeCCCCcc-ccccCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEeCCCchHHHHHHHhhheeccceeeeEEEcC
Q 045248          113 EVLDYKTPDG-AALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIP  190 (240)
Q Consensus       113 ~v~~~~~~~~-~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~  190 (240)
                      +++++.+.+. ..+.... .+++.+++++++ +.+..++++++++|+++.+|.... +.+++...+.++++++++++. .
T Consensus        74 ~~i~~~~~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~-~~~~~~~~~~~k~~~i~Gs~~-~  150 (166)
T d1llua2          74 LTVNARQEDPVEAIQRDI-GGAHGVLVTAVSNSAFGQAIGMARRGGTIALVGLPPG-DFPTPIFDVVLKGLHIAGSIV-G  150 (166)
T ss_dssp             EEEETTTSCHHHHHHHHH-SSEEEEEECCSCHHHHHHHHTTEEEEEEEEECCCCSS-EEEEEHHHHHHTTCEEEECCS-C
T ss_pred             ccccccchhHHHHHHHhh-cCCcccccccccchHHHHHHHHhcCCcEEEEEEecCC-CccCCHHHHHhCCcEEEEEee-c
Confidence            9999887762 2333223 345555666655 569999999999999999996543 344566677889999999764 6


Q ss_pred             CHHHHHHHHHHHHCC
Q 045248          191 KRENLDFLVKLVKEG  205 (240)
Q Consensus       191 ~~~~~~~~~~~~~~~  205 (240)
                      ++++++++++++++|
T Consensus       151 ~~~d~~e~l~l~~~G  165 (166)
T d1llua2         151 TRADLQEALDFAGEG  165 (166)
T ss_dssp             CHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHCc
Confidence            788999999999987

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.95  E-value=5e-29  Score=184.75  Aligned_cols=168  Identities=20%  Similarity=0.279  Sum_probs=134.3

Q ss_pred             CChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEE-cCCchHHHHHHHHHHhCCCEEEEEeCc-c----cHHHHH
Q 045248           34 VSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT-AASGGVGHYAVQLAKLGNTHVTASCGA-R----NIEFVK  107 (240)
Q Consensus        34 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~-G~~g~vG~~~~~~a~~~g~~v~~~~~~-~----~~~~~~  107 (240)
                      +|++|||+++++++|||+++.+..++     ++|++++|+ ||+|++|++++|+||++|++||++++. +    +.+.++
T Consensus         1 ls~~~AA~l~~~~~TA~~~l~~~~~~-----~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~   75 (189)
T d1gu7a2           1 LTINQGATISVNPLTAYLMLTHYVKL-----TPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLK   75 (189)
T ss_dssp             CCHHHHHTCTTHHHHHHHHHHSSSCC-----CTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHH
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHhCC-----CCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhh
Confidence            68999999999999999999888888     899988886 778999999999999999999998853 3    345678


Q ss_pred             hcCCCEEEeCCCCccc-------cccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchHHHHHHHhhheecc
Q 045248          108 SLGADEVLDYKTPDGA-------ALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSK  180 (240)
Q Consensus       108 ~~g~~~v~~~~~~~~~-------~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~  180 (240)
                      ++|+++++++++.+..       .+....+.++|++||++|++.+..++++|+++|+++.+|.....+.+++...+.+++
T Consensus        76 ~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~vdvv~D~vg~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~l~~k~  155 (189)
T d1gu7a2          76 ELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKN  155 (189)
T ss_dssp             HHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHHHHHHHHTSCTTCEEEECCCCSSCCEEECHHHHHHSC
T ss_pred             hccccEEEeccccchhHHHHHHHHHHhhccCCceEEEECCCcchhhhhhhhhcCCcEEEEECCccCCCccCcHHHHHHCC
Confidence            9999999987543311       112235678999999999988999999999999999999655444445556666788


Q ss_pred             ceeeeEEEc----CC----HHHHHHHHHHHHCCc
Q 045248          181 KQLVPLLLI----PK----RENLDFLVKLVKEGK  206 (240)
Q Consensus       181 ~~i~~~~~~----~~----~~~~~~~~~~~~~~~  206 (240)
                      +++.|++..    .+    .+.++++++++++|+
T Consensus       156 ~~i~G~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk  189 (189)
T d1gu7a2         156 FTSAGFWVTELLKNNKELKTSTLNQIIAWYEEGK  189 (189)
T ss_dssp             CEEEECCHHHHHTTCHHHHHHHHHHHHHHHHHTC
T ss_pred             cEEEEEEehHhhhhCHHHHHHHHHHHHHHHHcCC
Confidence            888887541    11    356788888888875

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.95  E-value=6.7e-28  Score=176.05  Aligned_cols=164  Identities=20%  Similarity=0.137  Sum_probs=132.0

Q ss_pred             hhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeC-cccHHHHHhcCCCE
Q 045248           36 AAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCG-ARNIEFVKSLGADE  113 (240)
Q Consensus        36 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~~g~~~  113 (240)
                      +.|+|++.|++.|+|+++.+.+++     ++|++|+|+| +|++|++++|+++++|+ +|+++++ ++|++.++++|+++
T Consensus         2 P~eaa~lgCa~~Ta~~a~~~~a~~-----~~G~~VlV~G-aGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~   75 (174)
T d1p0fa2           2 PLESCLIGCGFATGYGAAVNTAKV-----TPGSTCAVFG-LGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATE   75 (174)
T ss_dssp             CGGGGGGGTHHHHHHHHHHTTTCC-----CTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSE
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhCC-----CCCCEEEEEC-CCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcE
Confidence            567999999999999998788888     9999999999 79999999999999998 8888886 48999999999999


Q ss_pred             EEeCCCCc---cccccCCCCCcccEEEeCCCCC-CccccccCCCC-CcEEEEeCCCchH-HHHHHHhhheeccceeeeEE
Q 045248          114 VLDYKTPD---GAALKSPSGRKYDAVIHCATGI-PWSTFEPNLGT-NGKVIDITPGPSA-MLTFALKKLTFSKKQLVPLL  187 (240)
Q Consensus       114 v~~~~~~~---~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~-~G~iv~~g~~~~~-~~~~~~~~~~~~~~~i~~~~  187 (240)
                      ++|+++.+   ....+.+.++++|++||++|+. .+..++..+++ +|+++.+|..... ..+++ .....++++++|++
T Consensus        76 ~i~~~~~d~~~~~~~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~~~~~~~~-~~~~~~~~~i~Gs~  154 (174)
T d1p0fa2          76 CLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLD-PLLLLTGRSLKGSV  154 (174)
T ss_dssp             EECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEEC-THHHHTTCEEEECS
T ss_pred             EEcCCCchhHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEecCccccccC-HHHHhCCCEEEEEE
Confidence            99987655   2334556778999999999985 47778887776 5999999965432 22211 22335677898876


Q ss_pred             E-cCCHHHHHHHHHHHHCCc
Q 045248          188 L-IPKRENLDFLVKLVKEGK  206 (240)
Q Consensus       188 ~-~~~~~~~~~~~~~~~~~~  206 (240)
                      + ....++++++++++.+|+
T Consensus       155 ~G~~~~~d~~~lidl~~~gK  174 (174)
T d1p0fa2         155 FGGFKGEEVSRLVDDYMKKK  174 (174)
T ss_dssp             GGGCCGGGHHHHHHHHHTTS
T ss_pred             eCCCCHHHHHHHHHHHHcCC
Confidence            5 234678999999999886

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=1.8e-27  Score=175.46  Aligned_cols=164  Identities=14%  Similarity=0.166  Sum_probs=136.5

Q ss_pred             ChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHHHHHhcCCC
Q 045248           35 SAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNIEFVKSLGAD  112 (240)
Q Consensus        35 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~  112 (240)
                      +++.+|++.|++.|||+++.+..++     ++|++|||+| +|++|++++|+|+++|+ +|++++++ ++++.++++|++
T Consensus         2 d~~~~a~~~c~~~ta~~al~~~~~~-----~~G~~VlV~G-aG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~   75 (182)
T d1vj0a2           2 DLDVLAMAMCSGATAYHAFDEYPES-----FAGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGAD   75 (182)
T ss_dssp             CHHHHHHHTTHHHHHHHHHHTCSSC-----CBTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCS
T ss_pred             cHHHHHHhhcHHHHHHHHHHHHhCC-----CCCCEEEEEC-CCccchhheecccccccccccccccccccccccccccce
Confidence            3567888899999999999888888     8999999999 69999999999999999 89999964 899999999999


Q ss_pred             EEEeCCCCccc-----cccCCCCCcccEEEeCCCCCC-ccccccCCCCCcEEEEeCCCc-hHHHHH-HHhhheeccceee
Q 045248          113 EVLDYKTPDGA-----ALKSPSGRKYDAVIHCATGIP-WSTFEPNLGTNGKVIDITPGP-SAMLTF-ALKKLTFSKKQLV  184 (240)
Q Consensus       113 ~v~~~~~~~~~-----~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~g~~~-~~~~~~-~~~~~~~~~~~i~  184 (240)
                      .++++++.+..     ..+.+.+.|+|+||||+|++. +..++++++++|+++.+|... ..+.++ +...+.++++++.
T Consensus        76 ~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~~~l~~k~l~i~  155 (182)
T d1vj0a2          76 LTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFK  155 (182)
T ss_dssp             EEEETTTSCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCCCEEECHHHHTTTTTCEEE
T ss_pred             EEEeccccchHHHHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcCCCEEEEEeecCCCCccccccHHHHHHCCcEEE
Confidence            99998876621     234567889999999999865 889999999999999998532 222222 2345678899999


Q ss_pred             eEEEcCCHHHHHHHHHHHHCC
Q 045248          185 PLLLIPKRENLDFLVKLVKEG  205 (240)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~  205 (240)
                      |++. .+.+++++++++++++
T Consensus       156 G~~~-~~~~~~~~~~~~i~~~  175 (182)
T d1vj0a2         156 GIWV-SDTSHFVKTVSITSRN  175 (182)
T ss_dssp             ECCC-CCHHHHHHHHHHHHTC
T ss_pred             EEEe-CCHHHHHHHHHHHHHC
Confidence            9874 6888999999998875

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.94  E-value=4.5e-28  Score=176.54  Aligned_cols=166  Identities=23%  Similarity=0.326  Sum_probs=136.3

Q ss_pred             CChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHhcCCC
Q 045248           34 VSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGAD  112 (240)
Q Consensus        34 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~  112 (240)
                      +|++|||++++++.|||+++ +..++     ++|++|+|+| +|++|++++|+++..|++|+++++ ++|+++++++|++
T Consensus         1 ls~eeAA~l~~~~~Ta~~al-~~~~~-----~~g~~vlv~G-~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~   73 (168)
T d1rjwa2           1 LSFEEAAPIFCAGVTTYKAL-KVTGA-----KPGEWVAIYG-IGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGAD   73 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTC-----CTTCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCS
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCC-----CCCCEEEEee-cccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcc
Confidence            68999999999999999999 67788     8999999998 799999999999999999999986 4899999999999


Q ss_pred             EEEeCCCCc-cccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchHHHHHHHhhheeccceeeeEEEcCC
Q 045248          113 EVLDYKTPD-GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPK  191 (240)
Q Consensus       113 ~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  191 (240)
                      .++++.+.+ ...+.....+..|+++|+.+...+..++++++++|+++.+|...+. ..++...+.++++++.+++. ..
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~a~~~l~~~G~i~~~g~~~~~-~~~~~~~~~~~~~~i~gs~~-~~  151 (168)
T d1rjwa2          74 LVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEE-MPIPIFDTVLNGIKIIGSIV-GT  151 (168)
T ss_dssp             EEECTTTSCHHHHHHHHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSSE-EEEEHHHHHHTTCEEEECCS-CC
T ss_pred             eecccccchhhhhcccccCCCceEEeecCCHHHHHHHHHHhccCCceEecccccCC-CCCCHHHHHHCCcEEEEEee-CC
Confidence            999988876 3333333333445554444445699999999999999999975443 33455667788999998764 67


Q ss_pred             HHHHHHHHHHHHCCceE
Q 045248          192 RENLDFLVKLVKEGKLK  208 (240)
Q Consensus       192 ~~~~~~~~~~~~~~~i~  208 (240)
                      +++++++++++++|+++
T Consensus       152 ~~~~~~~l~l~~~Gkik  168 (168)
T d1rjwa2         152 RKDLQEALQFAAEGKVK  168 (168)
T ss_dssp             HHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            88999999999999875

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.94  E-value=2e-27  Score=173.22  Aligned_cols=164  Identities=15%  Similarity=0.102  Sum_probs=132.2

Q ss_pred             ChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeC-cccHHHHHhcCCC
Q 045248           35 SAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCG-ARNIEFVKSLGAD  112 (240)
Q Consensus        35 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~~g~~  112 (240)
                      +++++|+++|++.|+|+++.+.+++     ++|++|+|+| +|++|++++|+++.+|+ +|++++. ++|++.++++|++
T Consensus         2 ~Le~aa~l~Ca~~T~~~a~~~~a~v-----~~G~~VlV~G-~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~   75 (174)
T d1e3ia2           2 NLERVCLIGCGFSSGYGAAINTAKV-----TPGSTCAVFG-LGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT   75 (174)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCC-----CTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCC-----CCCCEEEEEC-CChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCC
Confidence            5788999999999999998788999     9999999999 89999999999999999 7888886 5899999999999


Q ss_pred             EEEeCCCCc---cccccCCCCCcccEEEeCCCCC-CccccccCCCCC-cEEEEeCCCchHHHHHHHhhheeccceeeeEE
Q 045248          113 EVLDYKTPD---GAALKSPSGRKYDAVIHCATGI-PWSTFEPNLGTN-GKVIDITPGPSAMLTFALKKLTFSKKQLVPLL  187 (240)
Q Consensus       113 ~v~~~~~~~---~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~  187 (240)
                      +++++...+   ....+.+.+.|+|++|||+|.+ .+..++++++++ |+++.+|.+... ..++...+ +.+++++|++
T Consensus        76 ~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~~~~-~~i~~~~~-~~~k~i~Gs~  153 (174)
T d1e3ia2          76 DCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDE-MTIPTVDV-ILGRSINGTF  153 (174)
T ss_dssp             EEECGGGCSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSSE-EEEEHHHH-HTTCEEEECS
T ss_pred             cccCCccchhhhhhhHhhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCCCCc-cccchHHH-hccCEEEEEE
Confidence            999876543   2334566788999999999985 499999999996 999999975432 22222222 2356777765


Q ss_pred             E--cCCHHHHHHHHHHHHCCc
Q 045248          188 L--IPKRENLDFLVKLVKEGK  206 (240)
Q Consensus       188 ~--~~~~~~~~~~~~~~~~~~  206 (240)
                      +  ....++++++++++.+|+
T Consensus       154 ~Gs~~~~~d~p~li~l~~~GK  174 (174)
T d1e3ia2         154 FGGWKSVDSVPNLVSDYKNKK  174 (174)
T ss_dssp             GGGCCHHHHHHHHHHHHHTTS
T ss_pred             eeCCChHHHHHHHHHHHHCcC
Confidence            4  123678899999998875

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.94  E-value=2.5e-27  Score=172.80  Aligned_cols=162  Identities=22%  Similarity=0.261  Sum_probs=133.6

Q ss_pred             CChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCC
Q 045248           34 VSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGAD  112 (240)
Q Consensus        34 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~  112 (240)
                      +|+++||++. .+.+||+++ +..++     ++|++|+|+| +|++|++++|+++.+|++|++++++ +|++.++++|++
T Consensus         1 VS~e~Aal~e-Pla~a~~a~-~~~~~-----~~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~   72 (170)
T d1e3ja2           1 VSLEEGALLE-PLSVGVHAC-RRAGV-----QLGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGAD   72 (170)
T ss_dssp             SCHHHHHTHH-HHHHHHHHH-HHHTC-----CTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS
T ss_pred             CCHHHHHHHH-HHHHHHHHH-HHhCC-----CCCCEEEEEc-ccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCc
Confidence            5789998872 345899999 77788     8999999998 8999999999999999999999965 899999999999


Q ss_pred             EEEeCCCCc--c----ccccCCCCCcccEEEeCCCCCC-ccccccCCCCCcEEEEeCCCchHHHHHHHhhheeccceeee
Q 045248          113 EVLDYKTPD--G----AALKSPSGRKYDAVIHCATGIP-WSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVP  185 (240)
Q Consensus       113 ~v~~~~~~~--~----~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~  185 (240)
                      .++..+...  .    ..++...+.++|++|||+|++. +..++++++++|+++.+|..... .+++...+..+++++++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~-~~~~~~~~~~k~i~i~g  151 (170)
T d1e3ja2          73 VTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQM-VTVPLVNACAREIDIKS  151 (170)
T ss_dssp             EEEECCTTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCSSC-CCCCHHHHHTTTCEEEE
T ss_pred             EEEeccccccccchhhhhhhcccccCCceeeecCCChHHHHHHHHHHhcCCceEEEecCCCC-CCcCHHHHHHCCCEEEE
Confidence            877654432  1    2334566789999999999864 89999999999999999976543 34566678889999999


Q ss_pred             EEEcCCHHHHHHHHHHHHCCc
Q 045248          186 LLLIPKRENLDFLVKLVKEGK  206 (240)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~  206 (240)
                      ++  ...++|+++++++++|+
T Consensus       152 s~--~~~~~~~~ai~li~~Gk  170 (170)
T d1e3ja2         152 VF--RYCNDYPIALEMVASGR  170 (170)
T ss_dssp             CC--SCSSCHHHHHHHHHTTS
T ss_pred             EE--CCHHHHHHHHHHHHcCC
Confidence            75  34557999999999986

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.5e-27  Score=172.87  Aligned_cols=164  Identities=16%  Similarity=0.202  Sum_probs=137.6

Q ss_pred             CChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHHHHHhcCC
Q 045248           34 VSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNIEFVKSLGA  111 (240)
Q Consensus        34 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~  111 (240)
                      +|+++||++ ..+.+||+++ +++++     ++|++|+|+| +|++|++++|+++.+|+ +|+++++. +|++.++++|+
T Consensus         1 vS~e~Aal~-epla~a~~a~-~~~~~-----~~gd~VlI~G-~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga   72 (171)
T d1pl8a2           1 VTFEEGALI-EPLSVGIHAC-RRGGV-----TLGHKVLVCG-AGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGA   72 (171)
T ss_dssp             SCHHHHHHH-HHHHHHHHHH-HHHTC-----CTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC
T ss_pred             CCHHHHHHH-HHHHHHHHHH-HHhCC-----CCCCEEEEEC-CCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCC
Confidence            578998877 2445899999 77888     8999999999 79999999999999999 89999965 89999999999


Q ss_pred             CEEEeCCCCcc----ccccCCCCCcccEEEeCCCCCC-ccccccCCCCCcEEEEeCCCchHHHHHHHhhheeccceeeeE
Q 045248          112 DEVLDYKTPDG----AALKSPSGRKYDAVIHCATGIP-WSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPL  186 (240)
Q Consensus       112 ~~v~~~~~~~~----~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~  186 (240)
                      +.++++.+.+.    ..+....+.++|++|||+|++. ++.++++++++|+++.+|..... .+++...+.+++++++|+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~~~~~-~~~~~~~~~~k~l~i~Gs  151 (171)
T d1pl8a2          73 DLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEM-TTVPLLHAAIREVDIKGV  151 (171)
T ss_dssp             SEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCCSC-CCCCHHHHHHTTCEEEEC
T ss_pred             cccccccccccccccccccccCCCCceEEEeccCCchhHHHHHHHhcCCCEEEEEecCCCC-CccCHHHHHHCCcEEEEE
Confidence            99998877662    2234556789999999999865 89999999999999999976543 456677788899999997


Q ss_pred             EEcCCHHHHHHHHHHHHCCceE
Q 045248          187 LLIPKRENLDFLVKLVKEGKLK  208 (240)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~  208 (240)
                      +  ...++|+++++++++|++.
T Consensus       152 ~--~~~~~~~~al~li~~gkid  171 (171)
T d1pl8a2         152 F--RYCNTWPVAISMLASKSVN  171 (171)
T ss_dssp             C--SCSSCHHHHHHHHHTTSCC
T ss_pred             e--CCHhHHHHHHHHHHcCCCC
Confidence            6  3456799999999999873

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.94  E-value=2.5e-27  Score=173.83  Aligned_cols=166  Identities=14%  Similarity=0.019  Sum_probs=131.2

Q ss_pred             ChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHHHHHhcCCC
Q 045248           35 SAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNIEFVKSLGAD  112 (240)
Q Consensus        35 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~  112 (240)
                      ++++||+++|++.|+|+++.+.+++     ++|++|+|+| +|++|++++|+++.+|+ +|++++++ ++++.++++|++
T Consensus         2 P~e~aa~l~ca~~Tay~al~~~~~~-----~~G~tVlI~G-aGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~   75 (176)
T d2fzwa2           2 PLDKVCLLGCGISTGYGAAVNTAKL-----EPGSVCAVFG-LGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT   75 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCC-----CTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCC-----CCCCEEEEec-chhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCc
Confidence            5789999999999999999888999     9999999999 68999999999999998 78888764 789999999999


Q ss_pred             EEEeCCCCc---cccccCCCCCcccEEEeCCCCCC-ccccccCCCCCcEEEEeCC-CchHHHHHHHhhheeccceeeeEE
Q 045248          113 EVLDYKTPD---GAALKSPSGRKYDAVIHCATGIP-WSTFEPNLGTNGKVIDITP-GPSAMLTFALKKLTFSKKQLVPLL  187 (240)
Q Consensus       113 ~v~~~~~~~---~~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~g~-~~~~~~~~~~~~~~~~~~~i~~~~  187 (240)
                      +++++.+..   ...++.+.+.++|++||++|++. +..+..+++++|.++.++. ........+......++++++|++
T Consensus        76 ~~i~~~~~~~~~~~~~~~~~~~g~D~vid~~G~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~Gs~  155 (176)
T d2fzwa2          76 ECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTA  155 (176)
T ss_dssp             EEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECS
T ss_pred             EEEeCCchhhHHHHHHHHHcCCCCcEeeecCCCHHHHHHHHHhhcCCceeEEEEeeccccccccccHHHHHCCCEEEEEe
Confidence            999886543   23455667789999999999855 7888999999988776653 222222122233345677888876


Q ss_pred             Ec--CCHHHHHHHHHHHHCCc
Q 045248          188 LI--PKRENLDFLVKLVKEGK  206 (240)
Q Consensus       188 ~~--~~~~~~~~~~~~~~~~~  206 (240)
                      +.  ...++++++++++++|+
T Consensus       156 ~G~~~~~~d~~~li~l~~~GK  176 (176)
T d2fzwa2         156 FGGWKSVESVPKLVSEYMSKK  176 (176)
T ss_dssp             GGGCCHHHHHHHHHHHHHTTS
T ss_pred             eeCCcHHHHHHHHHHHHHcCC
Confidence            41  23678999999999886

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.93  E-value=1.2e-26  Score=169.63  Aligned_cols=165  Identities=16%  Similarity=0.109  Sum_probs=130.7

Q ss_pred             CChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeC-cccHHHHHhcCC
Q 045248           34 VSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCG-ARNIEFVKSLGA  111 (240)
Q Consensus        34 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~~g~  111 (240)
                      .++++|++++|++.|+|+++.+.+++     ++|++|+|+| +|++|+.++|+++.+|+ +|++++. ++|++.++++|+
T Consensus         2 ~P~e~aa~l~Ca~~T~~~Av~~~~~~-----~~g~tVlI~G-~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA   75 (176)
T d1d1ta2           2 APPEKVCLIGCGFSTGYGAAVKTGKV-----KPGSTCVVFG-LGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGA   75 (176)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHTTSCC-----CTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTC
T ss_pred             cCHHHHHhhhhHHHHHHHHHHHhhCC-----CCCCEEEEEC-CCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCC
Confidence            35899999999999999999788888     9999999999 89999999999999997 9999996 589999999999


Q ss_pred             CEEEeCCCCcc--c-cccCCCCCcccEEEeCCCCCC-ccccccCCCCC-cEEEEeCCCchHHHHHHHhhheeccceeeeE
Q 045248          112 DEVLDYKTPDG--A-ALKSPSGRKYDAVIHCATGIP-WSTFEPNLGTN-GKVIDITPGPSAMLTFALKKLTFSKKQLVPL  186 (240)
Q Consensus       112 ~~v~~~~~~~~--~-~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~  186 (240)
                      ++++|+++.+.  . ..+.+.+.|+|+++|++|+.. +..++..+.++ |+++.+|.+.............+++++++|+
T Consensus        76 ~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~~~~~i~Gs  155 (176)
T d1d1ta2          76 TECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTYDPMLLFTGRTWKGC  155 (176)
T ss_dssp             SEEECGGGCSSCHHHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEEC
T ss_pred             cEEECccccchHHHHHHHHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEccccccccCCCHHHHhCCCEEEEE
Confidence            99999876542  2 345678889999999999864 66777766655 9999999654332211222334567788887


Q ss_pred             EEc--CCHHHHHHHHHHHHC
Q 045248          187 LLI--PKRENLDFLVKLVKE  204 (240)
Q Consensus       187 ~~~--~~~~~~~~~~~~~~~  204 (240)
                      ++.  ..+++++++++++.+
T Consensus       156 ~~G~~~~~~dip~li~~~~~  175 (176)
T d1d1ta2         156 VFGGLKSRDDVPKLVTEFLA  175 (176)
T ss_dssp             SGGGCCHHHHHHHHHHHHTT
T ss_pred             EEeCCCcHHHHHHHHHHHhC
Confidence            652  236788888887653

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.93  E-value=2.8e-27  Score=170.89  Aligned_cols=154  Identities=21%  Similarity=0.254  Sum_probs=123.5

Q ss_pred             HHHHHHH---HHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCC
Q 045248           45 AGLTAHQ---ALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTP  120 (240)
Q Consensus        45 ~~~ta~~---~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~  120 (240)
                      ++.|||.   ++.+....     +++++|||+||+|++|++++|+||.+|++|++++++ ++.++++++|++.++++++.
T Consensus         4 aGlTA~~a~~~L~~~g~~-----~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~   78 (167)
T d1tt7a2           4 AGFTAALSVHRLEQNGLS-----PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDV   78 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCC-----GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHH
T ss_pred             hHHHHHHHHHHHHHhcCC-----CCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccceEeccch
Confidence            4456664   45445555     678899999999999999999999999999999975 89999999999999987654


Q ss_pred             ccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchHHHHHHHhhheeccceeeeEEEcCC-HHHHHHHH
Q 045248          121 DGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPK-RENLDFLV  199 (240)
Q Consensus       121 ~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~  199 (240)
                      .....+.+.++++|+|+|++|++.+..++++|+++|+++.+|.......+++...+.+++++++|+..... .+...++.
T Consensus        79 ~~~~~~~~~~~gvd~vid~vgg~~~~~~~~~l~~~G~iv~~G~~~g~~~~~~~~~l~~k~~~i~G~~~~~~~~~~~~~~~  158 (167)
T d1tt7a2          79 YDGTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYCPMDVRAAVW  158 (167)
T ss_dssp             CSSCCCSSCCCCEEEEEESCCTHHHHHHHTTEEEEEEEEECCCSSCSCEEECSHHHHTSCCEEEECCSSSCCHHHHHHHH
T ss_pred             hchhhhcccCCCceEEEecCcHHHHHHHHHHhccCceEEEeeccCCCcccCCHHHHHHCCcEEEEEecCCCCHHHHHHHH
Confidence            45566677889999999999999999999999999999999977665555666777889999998643233 44555555


Q ss_pred             HHHH
Q 045248          200 KLVK  203 (240)
Q Consensus       200 ~~~~  203 (240)
                      +.+.
T Consensus       159 ~~l~  162 (167)
T d1tt7a2         159 ERMS  162 (167)
T ss_dssp             HHTT
T ss_pred             HHHH
Confidence            5543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.93  E-value=2e-26  Score=168.75  Aligned_cols=165  Identities=13%  Similarity=0.028  Sum_probs=131.1

Q ss_pred             ChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeC-cccHHHHHhcCCC
Q 045248           35 SAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCG-ARNIEFVKSLGAD  112 (240)
Q Consensus        35 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~~g~~  112 (240)
                      ++++||+++|++.|+|+++.+.+++     ++|++|+|+| +|++|+.++++++..|+ +|+++++ ++|++.++++|++
T Consensus         2 P~e~aa~l~ca~~Tay~a~~~~a~~-----k~g~~VlI~G-~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd   75 (175)
T d1cdoa2           2 PLDTVCLLGCGVSTGFGAAVNTAKV-----EPGSTCAVFG-LGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT   75 (175)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCC-----CTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCC
T ss_pred             CHHHHHHhhcHHHHHHHHHHHhhCC-----CCCCEEEEEe-cCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCc
Confidence            5789999999999999999888999     9999999999 89999999999999988 8888886 4899999999999


Q ss_pred             EEEeCCCCc---cccccCCCCCcccEEEeCCCCCC-ccccccCCCCCc-EEEEeCCCchHHHHHHHhhheeccceeeeEE
Q 045248          113 EVLDYKTPD---GAALKSPSGRKYDAVIHCATGIP-WSTFEPNLGTNG-KVIDITPGPSAMLTFALKKLTFSKKQLVPLL  187 (240)
Q Consensus       113 ~v~~~~~~~---~~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~G-~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~  187 (240)
                      +++|+.+.+   ....+.+.++|+|+++|++|+.. +..++++++++| .++..+..... ...+.....+++++++|++
T Consensus        76 ~~in~~~~~~~~~~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~~~~~-~~~~~~~~~~~~~~i~Gs~  154 (175)
T d1cdoa2          76 DFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLH-DVATRPIQLIAGRTWKGSM  154 (175)
T ss_dssp             EEECGGGCSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSSS-CEEECHHHHHTTCEEEECS
T ss_pred             EEEcCCCcchhHHHHHHhhccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEecCCc-ccCccHHHHHCCcEEEEEE
Confidence            999987654   23445667789999999999854 778888888775 44555544322 2223333446677888876


Q ss_pred             Ec--CCHHHHHHHHHHHHCCc
Q 045248          188 LI--PKRENLDFLVKLVKEGK  206 (240)
Q Consensus       188 ~~--~~~~~~~~~~~~~~~~~  206 (240)
                      ..  ..+++++++++++++|+
T Consensus       155 ~G~~~~~~d~~~~i~l~~~gK  175 (175)
T d1cdoa2         155 FGGFKGKDGVPKMVKAYLDKK  175 (175)
T ss_dssp             GGGCCHHHHHHHHHHHHHTTS
T ss_pred             EeCCcHHHHHHHHHHHHHcCC
Confidence            42  23678999999999885

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.93  E-value=3e-26  Score=167.95  Aligned_cols=166  Identities=14%  Similarity=0.040  Sum_probs=132.5

Q ss_pred             ChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeC-cccHHHHHhcCCC
Q 045248           35 SAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCG-ARNIEFVKSLGAD  112 (240)
Q Consensus        35 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~~g~~  112 (240)
                      ++++||+++|++.|+|+++.+.+++     ++|++|+|+| +|++|++++++++.+|+ +|+++++ ++|++.++++|++
T Consensus         2 Ple~aa~l~ca~~Tay~al~~~~~v-----k~GdtVlV~G-aGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~   75 (176)
T d2jhfa2           2 PLEKVCLIGCGFSTGYGSAVKVAKV-----TQGSTCAVFG-LGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT   75 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCC-----CTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCC-----CCCCEEEEEC-CCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCe
Confidence            5789999999999999999889999     9999999999 68999999999999997 8999996 4899999999999


Q ss_pred             EEEeCCCCc---cccccCCCCCcccEEEeCCCCCC-ccccccCCCCCc-EEEEeCCCchHHHHHHHhhheeccceeeeEE
Q 045248          113 EVLDYKTPD---GAALKSPSGRKYDAVIHCATGIP-WSTFEPNLGTNG-KVIDITPGPSAMLTFALKKLTFSKKQLVPLL  187 (240)
Q Consensus       113 ~v~~~~~~~---~~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~G-~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~  187 (240)
                      +++++.+.+   ....+.+.++|+|++||++|.+. +..++..++++| .++..+..+.....+....+.++++++.|++
T Consensus        76 ~~i~~~~~~~~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gs~  155 (176)
T d2jhfa2          76 ECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAI  155 (176)
T ss_dssp             EEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECS
T ss_pred             eEEecCCchhHHHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEecCCCCcccccccHHHHhCCCEEEEEE
Confidence            999875543   23456677789999999999865 778888998875 5555554433332223334556788998876


Q ss_pred             E--cCCHHHHHHHHHHHHCCc
Q 045248          188 L--IPKRENLDFLVKLVKEGK  206 (240)
Q Consensus       188 ~--~~~~~~~~~~~~~~~~~~  206 (240)
                      +  ...+++++++++++++|+
T Consensus       156 ~G~~~~~~~~~~li~~~~~GK  176 (176)
T d2jhfa2         156 FGGFKSKDSVPKLVADFMAKK  176 (176)
T ss_dssp             GGGCCHHHHHHHHHHHHHTTS
T ss_pred             EeCCCHHHHHHHHHHHHHCcC
Confidence            4  123778999999999885

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.1e-26  Score=171.64  Aligned_cols=167  Identities=19%  Similarity=0.220  Sum_probs=122.9

Q ss_pred             CChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCC--CeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeC-cc-cHHHHHh
Q 045248           34 VSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQ--KNILVTAASGGVGHYAVQLAKLGNT-HVTASCG-AR-NIEFVKS  108 (240)
Q Consensus        34 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g--~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~-~~-~~~~~~~  108 (240)
                      +|+.+.| ++.+++|||+++.+..++     ++|  ++|||+||+|++|++++|+||.+|+ +|+++++ ++ +.+.+++
T Consensus         2 ~~~~~ga-lg~~glTA~~~l~~~~~~-----~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~   75 (187)
T d1vj1a2           2 LSYFLGA-IGMPGLTSLIGVQEKGHI-----SAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSE   75 (187)
T ss_dssp             GGGGGTT-TSHHHHHHHHHHHHHSCC-----CTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHH
T ss_pred             ccHHHHH-hhcHHHHHHHHHHHHhCC-----CCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhc
Confidence            4666654 677889999999999888     666  8899999999999999999999999 5666664 44 4455678


Q ss_pred             cCCCEEEeCCCCc-cccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchHH---------HHHHHhhhee
Q 045248          109 LGADEVLDYKTPD-GAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAM---------LTFALKKLTF  178 (240)
Q Consensus       109 ~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~---------~~~~~~~~~~  178 (240)
                      +|++.++|+++++ .+.++...++|+|+|||++|++.+..++++++++|+++.+|..+...         .......+..
T Consensus        76 ~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vGg~~~~~~~~~l~~~G~iv~~G~~s~~~~~~~~~~~~~~~~~~~~~~  155 (187)
T d1vj1a2          76 LGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVGGDISNTVISQMNENSHIILCGQISQYNKDVPYPPPLPPAVEAIRKE  155 (187)
T ss_dssp             SCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEEC------------CCCCCHHHHHHHHH
T ss_pred             ccceEEeeccchhHHHHHHHHhccCceEEEecCCchhHHHHhhhccccccEEEeccccccccccccCCchHHHHHHHHHh
Confidence            9999999999887 44455545689999999999988999999999999999998532211         1111222345


Q ss_pred             ccceeeeEEEc----CCHHHHHHHHHHHHCCc
Q 045248          179 SKKQLVPLLLI----PKRENLDFLVKLVKEGK  206 (240)
Q Consensus       179 ~~~~i~~~~~~----~~~~~~~~~~~~~~~~~  206 (240)
                      +++++.++...    ...+.++++.+++++|+
T Consensus       156 k~i~~~g~~~~~~~~~~~e~~~~l~~~i~~Gk  187 (187)
T d1vj1a2         156 RNITRERFTVLNYKDKFEPGILQLSQWFKEGK  187 (187)
T ss_dssp             TTCEEEECCGGGCGGGHHHHHHHHHHHHHHTS
T ss_pred             cceEEEEeEecchHHHHHHHHHHHHHHHHCcC
Confidence            66666665431    12456788888888875

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=9.8e-27  Score=169.61  Aligned_cols=158  Identities=22%  Similarity=0.209  Sum_probs=124.3

Q ss_pred             CChhhhhhhchHHHHHHHHHH---hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhc
Q 045248           34 VSAAEGSGLPVAGLTAHQALT---QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSL  109 (240)
Q Consensus        34 ~~~~~aa~~~~~~~ta~~~l~---~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~  109 (240)
                      +|+.|||+++++++|||++++   +....     +++++|||+||+|++|++++|+||.+|++|++++++ ++.+.++++
T Consensus         1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~-----~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~l   75 (177)
T d1o89a2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVR-----PQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSL   75 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCC-----GGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH
T ss_pred             CCHHHHHHcccHHHHHHHHHHHHHHhCCC-----CCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhh
Confidence            578999999999999998764   23333     456699999999999999999999999999999965 899999999


Q ss_pred             CCCEEEeCCCCccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCCCchHHHHHHHhhheeccceeeeEEE-
Q 045248          110 GADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLL-  188 (240)
Q Consensus       110 g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~-  188 (240)
                      |+++++++++.+..  +......+|.++|++|++.+...+++++++|+++.+|.......+.+...+..+++++.|+.. 
T Consensus        76 Gad~vi~~~~~~~~--~~l~~~~~~~vvD~Vgg~~~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~k~~~i~G~~~~  153 (177)
T d1o89a2          76 GASRVLPRDEFAES--RPLEKQVWAGAIDTVGDKVLAKVLAQMNYGGCVAACGLAGGFTLPTTVMPFILRNVRLQGVDSV  153 (177)
T ss_dssp             TEEEEEEGGGSSSC--CSSCCCCEEEEEESSCHHHHHHHHHTEEEEEEEEECCCTTCSCCCCCSHHHHHHCCEEEECCSS
T ss_pred             ccccccccccHHHH--HHHHhhcCCeeEEEcchHHHHHHHHHhccccceEeecccCCccccccHHHHHHCCCeEEEEecc
Confidence            99999998765422  223445689999999999999999999999999999976544444455566678888888643 


Q ss_pred             cCCHHHHHHH
Q 045248          189 IPKRENLDFL  198 (240)
Q Consensus       189 ~~~~~~~~~~  198 (240)
                      ...++...++
T Consensus       154 ~~~~~~~~~~  163 (177)
T d1o89a2         154 MTPPERRAQA  163 (177)
T ss_dssp             SCCHHHHHHH
T ss_pred             cCCHHHHHHH
Confidence            2334443333

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.89  E-value=7.2e-24  Score=157.03  Aligned_cols=162  Identities=14%  Similarity=-0.002  Sum_probs=126.0

Q ss_pred             hhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHHHHHhcCCCEE
Q 045248           37 AEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNIEFVKSLGADEV  114 (240)
Q Consensus        37 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~~v  114 (240)
                      ++.++++..+.|||+++ +.+++     ++|++|||+| +|++|++++++++.+|+ +|++++++ +|++.++++|++++
T Consensus         2 ~d~~~l~d~~~ta~~a~-~~a~v-----~~G~tVlV~G-aG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~   74 (195)
T d1kola2           2 RDLTCLSDILPTGYHGA-VTAGV-----GPGSTVYVAG-AGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIA   74 (195)
T ss_dssp             HHHGGGGTHHHHHHHHH-HHTTC-----CTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEE
T ss_pred             chHHhcccHHHHHHHHH-HHhCC-----CCCCEEEEEC-cCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEE
Confidence            56788888899999998 77899     9999999999 79999999999999999 89998865 89999999999999


Q ss_pred             EeCCCCc--cccccCCCCCcccEEEeCCCCC----------------CccccccCCCCCcEEEEeCCCchHH--------
Q 045248          115 LDYKTPD--GAALKSPSGRKYDAVIHCATGI----------------PWSTFEPNLGTNGKVIDITPGPSAM--------  168 (240)
Q Consensus       115 ~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~----------------~~~~~~~~l~~~G~iv~~g~~~~~~--------  168 (240)
                      +++.+.+  ....+.+.+.++|++||++|.+                .++.++++++++|+++.+|......        
T Consensus        75 ~~~~~~~~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~~~~~~~~~~~~  154 (195)
T d1kola2          75 DLSLDTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAA  154 (195)
T ss_dssp             ETTSSSCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSCCTTCSSHHH
T ss_pred             EeCCCcCHHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecCCCcccchhhhh
Confidence            9887766  2344667889999999999943                4788899999999999998532110        


Q ss_pred             ----HHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCc
Q 045248          169 ----LTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGK  206 (240)
Q Consensus       169 ----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  206 (240)
                          .++....++.+++++.+.. .+-++.++++++++..++
T Consensus       155 ~~~~~~~~~~~~~~k~~~i~~g~-~~v~~~~~~Ll~~I~~~k  195 (195)
T d1kola2         155 KIGSLSIRFGLGWAKSHSFHTGQ-TPVMKYNRALMQAIMWDR  195 (195)
T ss_dssp             HTTCCCCCHHHHHHTTCEEEESS-CCHHHHHHHHHHHHHTTS
T ss_pred             hcCceeeeHHHHHhhcceeccCC-CchHHHHHHHHHHHHcCC
Confidence                0112223334555554322 234667888999988764

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=5.5e-17  Score=99.88  Aligned_cols=73  Identities=37%  Similarity=0.423  Sum_probs=64.9

Q ss_pred             CChhhhhhhchHHHHHHHHHHh---hhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHhc
Q 045248           34 VSAAEGSGLPVAGLTAHQALTQ---SAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSL  109 (240)
Q Consensus        34 ~~~~~aa~~~~~~~ta~~~l~~---~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~  109 (240)
                      +|++|++++++++.|||.+++.   ....     +++++|||+|++|++|.+++|+++.+|++|+++++ +++.++++++
T Consensus         1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~-----~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~l   75 (77)
T d1o8ca2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVR-----PQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSL   75 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCC-----GGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhhhc-----cCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHC
Confidence            5899999999999999988753   3344     78999999999999999999999999999999885 5899999999


Q ss_pred             CC
Q 045248          110 GA  111 (240)
Q Consensus       110 g~  111 (240)
                      |+
T Consensus        76 GA   77 (77)
T d1o8ca2          76 GA   77 (77)
T ss_dssp             TE
T ss_pred             CC
Confidence            85

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.18  E-value=2.6e-12  Score=92.89  Aligned_cols=69  Identities=14%  Similarity=0.122  Sum_probs=59.6

Q ss_pred             cccceecc-cCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCC
Q 045248            2 CNLWRIDV-SHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAAS   76 (240)
Q Consensus         2 c~~~~~~~-~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~   76 (240)
                      |++..+.+ ...+|+|+||+++++++++++|++++++++++++..+.|+|+++ +.+++     ++|++|+|+||+
T Consensus       107 c~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~a~-~~~~~-----~~g~~VlVig~C  176 (178)
T d1e3ja1         107 CPDLTFCATPPDDGNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTVDAF-EAARK-----KADNTIKVMISC  176 (178)
T ss_dssp             CTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTCCCGGGEEEEEEGGGHHHHH-HHHHH-----CCTTCSEEEEEC
T ss_pred             cccccceeccccccccceeeeecccceeeCCCCCCHHHHHHHHhHHHHHHHHH-HHhCC-----CCCCEEEEEccc
Confidence            55545443 35679999999999999999999999999999988888999998 67888     899999999964

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.10  E-value=3.9e-11  Score=85.96  Aligned_cols=65  Identities=18%  Similarity=0.219  Sum_probs=57.4

Q ss_pred             CcccceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEE
Q 045248            1 MCNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILV   72 (240)
Q Consensus         1 ~c~~~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV   72 (240)
                      +|.+..+.+...+|+|+||++++++.++++|+++++++++++...+.|+|+++ +.+++      .|++|||
T Consensus       106 ~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~e~aa~~~~~~~ta~~al-~~~~~------~G~~VlI  170 (171)
T d1h2ba1         106 HCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLERL-EKGEV------LGRAVLI  170 (171)
T ss_dssp             GCTTCBCBTTTBCCSSBSEEEECGGGEEECCTTCCCCEEEEEGGGHHHHHHHH-HTTCC------SSEEEEE
T ss_pred             cccccccceeecccccceeeeehhhcceecCCCCCHHHHHHHHhHHHHHHHHH-HhcCC------CCCEEEe
Confidence            36677778888899999999999999999999999998988888999999999 56665      6899987

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=98.99  E-value=1.1e-10  Score=79.51  Aligned_cols=61  Identities=18%  Similarity=0.101  Sum_probs=53.8

Q ss_pred             ceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEE
Q 045248            5 WRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILV   72 (240)
Q Consensus         5 ~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV   72 (240)
                      .++.+...+|+|+||++++++.++++|+++++++||++++.+.|||+++.+.+       ..|++||+
T Consensus        70 d~V~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~Ta~~al~~~g-------~~g~tvl~  130 (131)
T d1iz0a1          70 RRYAALVPQGGLAERVAVPKGALLPLPEGRPVVGPVFPFAEAEAAFRALLDRG-------HTGKVVVR  130 (131)
T ss_dssp             EEEEEECSSCCSBSEEEEEGGGCEECCTTCCCEEEEEEGGGHHHHHHHTTCTT-------CCBEEEEE
T ss_pred             ceEEEEeccCccceeeeeCHHHeEEccCCCCHHHHHHHHHHHHHHHHHHHhcc-------cCCCEEEE
Confidence            45566778899999999999999999999999999999999999999996665       46788876

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.95  E-value=1.8e-10  Score=80.72  Aligned_cols=59  Identities=15%  Similarity=0.148  Sum_probs=50.9

Q ss_pred             ccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEc
Q 045248            9 VSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTA   74 (240)
Q Consensus         9 ~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G   74 (240)
                      +...+|+|+||++++++.++++|++++ +++|+++++.+|++..+.....+     + |++|||.|
T Consensus        94 ~~~~~G~~aEy~~v~~~~~~~iP~~l~-~~aa~l~~a~~ta~~~~~~~~~~-----~-G~tVL~l~  152 (152)
T d1xa0a1          94 GVTHFGGYSEYARLHGEWLVPLPKGLE-RIAQEISLAELPQALKRILRGEL-----R-GRTVVRLA  152 (152)
T ss_dssp             TTTBCCSSBSEEEECGGGCEECCTTHH-HHEEEEEGGGHHHHHHHHHHTCC-----C-SEEEEECC
T ss_pred             ccccCCCcceeeeehhhccccCCCCCC-HHHHHHHHHHHHHHHHHHHhcCC-----C-CCEEEEcC
Confidence            334579999999999999999999998 57888888888998888777777     4 99999975

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.91  E-value=6.3e-10  Score=79.85  Aligned_cols=65  Identities=17%  Similarity=0.140  Sum_probs=56.5

Q ss_pred             cccceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEE
Q 045248            2 CNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT   73 (240)
Q Consensus         2 c~~~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~   73 (240)
                      |.+....|...+|+|+||+++++++++++|++++++.++++..++.|+++.+ +...      .+|++|||.
T Consensus       111 ~~~~~~~G~~~~gg~aey~~v~~~~~~~iPd~l~~~~a~~~~~~~~t~~~~~-~~g~------~~G~~VLVl  175 (175)
T d1llua1         111 CESQQNTGYSVNGGYAEYVLADPNYVGILPKNVKATIHPGKLDDINQILDQM-RAGQ------IEGRIVLEM  175 (175)
T ss_dssp             CTTCEEBTTTBCCSSBSEEEECTTTSEECCTTCCCCEEEECGGGHHHHHHHH-HTTC------CSSEEEEEC
T ss_pred             cccccccccccccccceEEEechHHEEECCCCCChhHHHHHHhHHHHHHHHH-HhCC------CCCCEEEeC
Confidence            6677788888899999999999999999999999998888888888999888 4443      479999984

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=98.88  E-value=4.9e-10  Score=82.09  Aligned_cols=57  Identities=9%  Similarity=0.028  Sum_probs=52.2

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEE
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT   73 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~   73 (240)
                      .+|+|+||+++++..++++|++++++++|++.+++.|++.++......     +.|++|||+
T Consensus       143 ~~Ggfaey~~v~~~~~~~iP~~~~~~~aa~l~~~l~t~~~av~~~~~~-----~~G~tVlv~  199 (199)
T d1cdoa1         143 GTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLESVNDAIDLMKHG-----KCIRTVLSL  199 (199)
T ss_dssp             GTCCSBSEEEEEGGGEEECCTTSCCGGGEEEEEEGGGHHHHHHHHHTT-----CCSEEEEEC
T ss_pred             ccCCceEEEEEchHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHhCCC-----CCCCEEEeC
Confidence            469999999999999999999999999999999999999999777777     789999984

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.88  E-value=5.9e-10  Score=80.99  Aligned_cols=60  Identities=13%  Similarity=0.078  Sum_probs=52.0

Q ss_pred             ccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEc
Q 045248            9 VSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTA   74 (240)
Q Consensus         9 ~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G   74 (240)
                      |...+|+|+||+++++++++++|+++++++|+.+..++.|||+++ +.+++     +++++|+|..
T Consensus       128 G~~~~Ggfaey~~v~~~~~~~iP~~l~~e~Aal~~~~~~ta~~~l-~~~~v-----k~g~~Vvv~~  187 (192)
T d1piwa1         128 GYVSQGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEAFERM-EKGDV-----RYRFTLVGYD  187 (192)
T ss_dssp             SCBCCCSSBSEEEEEGGGEEECCTTCCEEEEESSHHHHHHHHHHH-HHTCC-----SSEEEEECCH
T ss_pred             ccccccceeeEEEeehHHeEECCCCCCHHHHHHHHHHHHHHHHHH-HHhCC-----CCCCEEEEEC
Confidence            556689999999999999999999999988776666677999999 68888     8999998853

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.86  E-value=1.1e-09  Score=78.19  Aligned_cols=64  Identities=14%  Similarity=0.120  Sum_probs=50.1

Q ss_pred             cccceecccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEc
Q 045248            2 CNLWRIDVSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTA   74 (240)
Q Consensus         2 c~~~~~~~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G   74 (240)
                      |.+....+...+|+|+||+++++++++++|++++++.|++.+  ..++++.+ ....+      +|++|||+|
T Consensus       106 ~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~e~A~l~~--~~~~~~~~-~~~~~------~G~tVlViG  169 (171)
T d1rjwa1         106 CEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNTIIEVQPLEK--INEVFDRM-LKGQI------NGRVVLTLE  169 (171)
T ss_dssp             CTTCEEBTTTBCCSSBSEEEEEGGGCEECCTTCCEEEEEGGG--HHHHHHHH-HTTCC------SSEEEEECC
T ss_pred             cccccccceeccCccccceEecHHHEEECCCCCCHHHHHHHH--HHHHHHHH-HhcCC------CCCEEEEeC
Confidence            455566677788999999999999999999999987665433  34777777 44555      599999998

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=98.84  E-value=2.2e-12  Score=91.78  Aligned_cols=65  Identities=23%  Similarity=0.266  Sum_probs=53.7

Q ss_pred             ccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchH
Q 045248            9 VSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGV   79 (240)
Q Consensus         9 ~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~v   79 (240)
                      +...+|+|+||++++++.++++|+++|+++||++++.++|+|.++.. ...     ..+++|||+|+.|++
T Consensus        94 g~~~~G~~aey~~v~~~~l~~iP~~ls~~~Aa~~~~~~~ta~~~~~~-~~~-----~~~~~Vli~ga~G~v  158 (162)
T d1tt7a1          94 GVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVDQLLTIVDREVSLE-ETP-----GALKDILQNRIQGRV  158 (162)
T ss_dssp             TTTBCCSSBSSEEECGGGEEECCTTCCHHHHHHSCSTTSEEEEECST-THH-----HHHHHTTTTCCSSEE
T ss_pred             eeccccccceEEEecHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHh-cCC-----CCCCEEEEECCcceE
Confidence            44568999999999999999999999999999999999999877632 223     556788888877754

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.7e-09  Score=75.48  Aligned_cols=60  Identities=23%  Similarity=0.322  Sum_probs=54.3

Q ss_pred             ccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEE
Q 045248            9 VSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT   73 (240)
Q Consensus         9 ~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~   73 (240)
                      ....+|+|+||+.+++++++++|+++++++||++++++.|+|+.+......     ..|+++||.
T Consensus        91 ~~~~~G~~ae~~~v~~~~~~~iP~~ls~~~Aa~~~~~~~ta~~~~~~~g~~-----~~G~~vliL  150 (150)
T d1yb5a1          91 SSTISGGYAEYALAADHTVYKLPEKLKPVIGSQYPLEKVAEAHENIIHGSG-----ATGKMILLL  150 (150)
T ss_dssp             SCCSSCSSBSEEEEEGGGEEECCTTCCCCEEEEEEGGGHHHHHHHHHHSSC-----CSSEEEEEC
T ss_pred             cccccccccccccccccccccccCCCCHHHHHHhhhhhhhehhhheEEcCc-----ccCCEEEEC
Confidence            345679999999999999999999999999999999999999998888877     899999874

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2.1e-09  Score=77.69  Aligned_cols=67  Identities=15%  Similarity=0.176  Sum_probs=51.4

Q ss_pred             cccceeccc-CCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCch
Q 045248            2 CNLWRIDVS-HNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGG   78 (240)
Q Consensus         2 c~~~~~~~~-~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~   78 (240)
                      |.+..+.+. +.+|+|+||+++++++++++|++++++++++++++  ++++++ +..++     +.|++||| | +|+
T Consensus       113 c~~~~~~g~~~~~G~~aey~~~~~~~~~~lP~~~~~~~aa~~pl~--~a~~a~-~~~~~-----~~G~~VlI-g-~GP  180 (185)
T d1pl8a1         113 SPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVKPLVTHRFPLE--KALEAF-ETFKK-----GLGLKIML-K-CDP  180 (185)
T ss_dssp             CTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTCGGGEEEEEEGG--GHHHHH-HHHHT-----TCCSEEEE-E-CCT
T ss_pred             hccceeeecccccccceEEEEEchHHEEECCCCCCHHHHHHHHHH--HHHHHH-HHhCC-----CCCCEEEE-E-eCC
Confidence            444444443 56899999999999999999999999998877654  566666 55566     79999998 4 443

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=98.64  E-value=7.2e-09  Score=75.50  Aligned_cols=60  Identities=8%  Similarity=-0.004  Sum_probs=50.4

Q ss_pred             ccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEE
Q 045248            9 VSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVT   73 (240)
Q Consensus         9 ~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~   73 (240)
                      ++..+|+|+||+++++.+++++|++++++++|++++++.|++.++.....-     +.+++|||+
T Consensus       138 ~~~g~GgfAey~vvp~~~~~~vp~~l~~~~aa~~~~~~~t~~~a~~~~~~g-----~~~~tvvvi  197 (197)
T d2fzwa1         138 HYMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEINKAFELMHSG-----KSIRTVVKI  197 (197)
T ss_dssp             CCTTTCCSBSEEEEEGGGEEECCTTSCSGGGEEEEEEGGGHHHHHHHHHHT-----CCSEEEEEC
T ss_pred             cccccccceeEEEechHHEEECCCCCCHHHHhhhhhHHHHHHHHHHhccCC-----CcCCEEEeC
Confidence            344469999999999999999999999999999999999999998544333     578888874

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=1.6e-08  Score=70.01  Aligned_cols=45  Identities=29%  Similarity=0.140  Sum_probs=39.7

Q ss_pred             ccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHH
Q 045248            9 VSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQAL   53 (240)
Q Consensus         9 ~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l   53 (240)
                      +...+|+|+||++++++.++++|+++|+++||++++++.||+.++
T Consensus        91 g~~~~G~~Aey~~v~~~~vv~lP~~ls~~eAA~l~~a~~tA~~~~  135 (146)
T d1o89a1          91 GENHWGGLAEQARVKGDWLVAMPQGQAAKEISLSEAPNFAEAIIN  135 (146)
T ss_dssp             TTTBCCSSBSEEEECGGGCEECCTTSCCEEECGGGHHHHHHHHHT
T ss_pred             eecCCCcceeeeeeeeeeEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            345579999999999999999999999999999999888885544

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=98.51  E-value=2.7e-11  Score=87.21  Aligned_cols=70  Identities=14%  Similarity=0.185  Sum_probs=54.4

Q ss_pred             ccCCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHh-hhCCCcCCCCCCCeEEEEc-CCchHHHHHHH
Q 045248            9 VSHNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQ-SAGVKLDGSGQQKNILVTA-ASGGVGHYAVQ   85 (240)
Q Consensus         9 ~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~-~~~~~~~~~~~g~~vlV~G-~~g~vG~~~~~   85 (240)
                      .....|+|+||+++++++++++|++++.+.+  +++..+|||+++.. ..++     ++|++|||+| |+|++|++++|
T Consensus       103 ~~~~~g~~aey~~v~~~~~~~iP~~~~~~~a--~~~~~~ta~~~l~~~~~~~-----~~g~~vli~gaa~~gvG~~~iQ  174 (175)
T d1gu7a1         103 SHVNFGTWRTHALGNDDDFIKLPNPAQSKAN--GKPNGLTDAKSIETLYDGT-----KPLHELYQDGVANSKDGKQLIT  174 (175)
T ss_dssp             SSSCCCCSBSEEEEEGGGEEEECCHHHHHHT--TCSCCCCCCCCEEEECCSS-----SCHHHHHHHHHHTGGGSCEEEE
T ss_pred             cccccccccceeeehhhhccCCCccchhhhh--ccchHHHHHHHHHHHhcCC-----CCCCEEEEECccchhhhheEEe
Confidence            3445799999999999999999998654443  34556688888753 4567     8999999998 45789987765

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=98.42  E-value=1.6e-07  Score=64.90  Aligned_cols=58  Identities=9%  Similarity=0.165  Sum_probs=47.0

Q ss_pred             ccCCCcccceEEEecCCceeeCCCCCChhhhh--hhchHHHHHHHHHHhhhCCCcCCCCCCCeEEE
Q 045248            9 VSHNGGGLAEFAVAKESSTVARPSEVSAAEGS--GLPVAGLTAHQALTQSAGVKLDGSGQQKNILV   72 (240)
Q Consensus         9 ~~~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa--~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV   72 (240)
                      .....|+|+||++++.+.++++|+++++++++  ++++...++++++.+ .++     ++|++|||
T Consensus        87 ~~~~~G~~ae~~~v~~~~~~~~P~~~~~~~a~a~~~~~~~~~~~~~l~~-~~~-----~~G~~VLI  146 (147)
T d1qora1          87 AQSALGAYSSVHNIIADKAAILPAAIKVDVAEQQKYPLKDAQRAHEILE-SRA-----TQGSSLLI  146 (147)
T ss_dssp             SCCSSCCSBSEEEEEGGGEEECCTTSCCCCCGGGEEEGGGHHHHHHHHH-TTC-----CCBCCEEE
T ss_pred             eccccccceeEEEEehHHeEEcCcccchHHHHHHHHHHHHHHHHHHHHH-hCC-----CCCCEEEe
Confidence            34567999999999999999999999887554  446776788887744 567     89999997

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=98.34  E-value=1.1e-07  Score=69.35  Aligned_cols=55  Identities=11%  Similarity=0.053  Sum_probs=47.0

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEc
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTA   74 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G   74 (240)
                      ..|+|+||+++++..++++|++++++.++++.+++.+++.++. ..       ++|++|.|+.
T Consensus       146 ~~G~faey~~v~~~~l~~lP~~~~~~~~~~~~~~~~~~~~a~~-~~-------k~G~~V~vi~  200 (202)
T d1e3ia1         146 GVSSFSQYTVVSEANLARVDDEFDLDLLVTHALPFESINDAID-LM-------KEGKSIRTIL  200 (202)
T ss_dssp             TTCCSBSEEEEEGGGEEECCTTSCGGGGEEEEEEGGGHHHHHH-HH-------HTTCCSEEEE
T ss_pred             ccCCceEEEEEehhhEEECCCCCCHHHHHHHHHHHHHHHHHHH-hC-------CCCCEEEEEE
Confidence            3599999999999999999999999998888888888888883 32       7888888764

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=98.32  E-value=1.9e-07  Score=66.93  Aligned_cols=51  Identities=14%  Similarity=0.222  Sum_probs=41.0

Q ss_pred             CCcccceEEEec-CCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEc
Q 045248           12 NGGGLAEFAVAK-ESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTA   74 (240)
Q Consensus        12 ~~G~~~e~~~v~-~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G   74 (240)
                      .+|+|+||++++ +.+++++|+++++++    +++  +|++++ +.+++     ++|++|+|+-
T Consensus       132 ~~Gg~ae~~~v~~~~~v~~ip~~l~~~~----pl~--~A~~a~-~~~~~-----~~G~~VlI~~  183 (184)
T d1vj0a1         132 LRGCYSSHIVLDPETDVLKVSEKITHRL----PLK--EANKAL-ELMES-----REALKVILYP  183 (184)
T ss_dssp             CCSSSBSEEEECTTCCEEEECTTCCEEE----EGG--GHHHHH-HHHHH-----TSCSCEEEEC
T ss_pred             cceeCcCcEEechhHcEEECCCCCCHHH----HHH--HHHHHH-HHhCC-----CcCCEEEEee
Confidence            489999999995 579999999999764    222  567777 67777     8999999974

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.27  E-value=5.1e-07  Score=64.35  Aligned_cols=64  Identities=13%  Similarity=0.103  Sum_probs=47.2

Q ss_pred             CcccceecccCCCcccceEEEecCCc-eeeCCCCCChhhhhhh-chHHHHHHHHHHhhhCCCcCCCCCCCeEEE
Q 045248            1 MCNLWRIDVSHNGGGLAEFAVAKESS-TVARPSEVSAAEGSGL-PVAGLTAHQALTQSAGVKLDGSGQQKNILV   72 (240)
Q Consensus         1 ~c~~~~~~~~~~~G~~~e~~~v~~~~-~~~ip~~~~~~~aa~~-~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV   72 (240)
                      +|++..+.+...+|+|+||+++++.. ++++|+. ++.+++++ ..++.++++++ +.+++      .|++|||
T Consensus       111 ~c~~~~~~g~~~~G~~aey~~vp~~~~~~~~~~~-~~~~~a~~~~~~~~~a~~~~-~~~~~------~G~~VlI  176 (177)
T d1jvba1         111 LCDSPRWLGINFDGAYAEYVIVPHYKYMYKLRRV-KPMITKTMKLEEANEAIDNL-ENFKA------IGRQVLI  176 (177)
T ss_dssp             GCSSCEEBTTTBCCSSBSEEEESCGGGEEECSSS-CCCCEEEEEGGGHHHHHHHH-HTTCC------CSEEEEE
T ss_pred             ccCCcceeeeccccccccEEEEEhHHeEEECCCC-ChHHHHHHHHHHHHHHHHHH-Hhhcc------cCCceEC
Confidence            36677777888899999999998765 5555554 44555544 56778999999 66665      5888887

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.16  E-value=5.1e-10  Score=81.95  Aligned_cols=71  Identities=17%  Similarity=0.107  Sum_probs=55.0

Q ss_pred             CCCcccceEEEecC--CceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHH
Q 045248           11 HNGGGLAEFAVAKE--SSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAK   88 (240)
Q Consensus        11 ~~~G~~~e~~~v~~--~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~   88 (240)
                      ..+|+|+||+++|.  ..+++||++.+..+++++...+.++++++ +..+.     +.+    ++| +|++|++++|+||
T Consensus       129 ~~~Gg~aeyv~vp~~~~~l~~iPd~~~~~~~~~~~~~~~~~~~a~-~~~~~-----~~g----~~g-~G~vG~~~i~~ak  197 (201)
T d1kola1         129 DWTGGQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGVQVISL-DDAPR-----GYG----EFD-AGVPKKFVIDPHK  197 (201)
T ss_dssp             CBCCCSBSEEEESSHHHHCEECSCHHHHHHTCCHHHHHTEEEECG-GGHHH-----HHH----HHH-HTCSCEEEECTTC
T ss_pred             ccccccccEEEeehHHCeEEECCCCCChHHHHHHHHHHHHHHHHH-HhCCC-----CCe----EEe-eCHHHHHHHHHHH
Confidence            34799999999975  37999999877777777766666777776 44433     333    357 9999999999999


Q ss_pred             hCCC
Q 045248           89 LGNT   92 (240)
Q Consensus        89 ~~g~   92 (240)
                      .+|+
T Consensus       198 ~~GA  201 (201)
T d1kola1         198 TFSA  201 (201)
T ss_dssp             SSCC
T ss_pred             HcCC
Confidence            9986

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.15  E-value=2.1e-06  Score=61.91  Aligned_cols=54  Identities=15%  Similarity=0.133  Sum_probs=44.5

Q ss_pred             CcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC
Q 045248           13 GGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT   92 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~   92 (240)
                      .|+|+||+++++..++++|++++++++                              +++.| +|++|++++|+++.+|+
T Consensus       139 ~g~fae~~~v~~~~~~~ip~~i~~~~~------------------------------~~i~g-~g~~g~~aiq~a~~~g~  187 (194)
T d1f8fa1         139 QSSFATYALSRENNTVKVTKDFPFDQL------------------------------VKFYA-FDEINQAAIDSRKGITL  187 (194)
T ss_dssp             TCCSBSEEEEEGGGEEEECTTCCGGGG------------------------------EEEEE-GGGHHHHHHHHHHTSCS
T ss_pred             ccccceeEEEehHHEEECCCCCCcccE------------------------------EEEeC-cHHHHHHHHHHHHHcCC
Confidence            489999999999999999998775443                              34455 89999999999999999


Q ss_pred             -EEEEE
Q 045248           93 -HVTAS   97 (240)
Q Consensus        93 -~v~~~   97 (240)
                       +|+++
T Consensus       188 ~~iiaV  193 (194)
T d1f8fa1         188 KPIIKI  193 (194)
T ss_dssp             EEEEEC
T ss_pred             CEEEEe
Confidence             55554

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.07  E-value=2.1e-05  Score=55.22  Aligned_cols=95  Identities=23%  Similarity=0.147  Sum_probs=68.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHhcCCCEEEeC-CC-Cc-c------c------------
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDY-KT-PD-G------A------------  123 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~v~~~-~~-~~-~------~------------  123 (240)
                      +..+|+|+| +|..|+.+++.|+.+|++|.+.+. .++++.+++++...+--. .. .. .      +            
T Consensus        28 ~pa~VvViG-aGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          28 PPARVLVFG-VGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             CCcEEEEEc-CcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            457899999 899999999999999999999995 589999999987543110 00 00 0      0            


Q ss_pred             cccCCCCCcccEEEeCC---CCC--C--ccccccCCCCCcEEEEeC
Q 045248          124 ALKSPSGRKYDAVIHCA---TGI--P--WSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       124 ~~~~~~~~~~d~v~d~~---g~~--~--~~~~~~~l~~~G~iv~~g  162 (240)
                      .+.. .=...|+||-++   |..  .  -++.++.+++|+.||.+.
T Consensus       107 ~l~~-~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDva  151 (183)
T d1l7da1         107 AVLK-ELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA  151 (183)
T ss_dssp             HHHH-HHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred             HHHH-HHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEe
Confidence            0000 013589999988   332  1  457889999999999886

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.01  E-value=3.9e-06  Score=58.21  Aligned_cols=92  Identities=15%  Similarity=0.194  Sum_probs=67.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHhcCCC--EEEeCCCCc-cccccCCCCCcccEEEeCC-
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGAD--EVLDYKTPD-GAALKSPSGRKYDAVIHCA-  140 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~--~v~~~~~~~-~~~~~~~~~~~~d~v~d~~-  140 (240)
                      +..+|+|+| +|..|+.+++.|+.+|++|.+.+. .++++++++....  ......+.. .+.+     ...|+||.++ 
T Consensus        31 ~pa~V~ViG-aGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~-----~~aDivI~aal  104 (168)
T d1pjca1          31 KPGKVVILG-GGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAV-----AEADLLIGAVL  104 (168)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHH-----HTCSEEEECCC
T ss_pred             CCcEEEEEC-CChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhh-----ccCcEEEEeee
Confidence            568899999 899999999999999999999995 4788888765422  222211111 1122     3489999998 


Q ss_pred             --CCC--C--ccccccCCCCCcEEEEeCC
Q 045248          141 --TGI--P--WSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       141 --g~~--~--~~~~~~~l~~~G~iv~~g~  163 (240)
                        |.+  .  -++.++.+++|+.+|.+..
T Consensus       105 ipG~~aP~lIt~~mv~~Mk~GSVIVDvai  133 (168)
T d1pjca1         105 VPGRRAPILVPASLVEQMRTGSVIVDVAV  133 (168)
T ss_dssp             CTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             cCCcccCeeecHHHHhhcCCCcEEEEeec
Confidence              322  1  4578889999999998864

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.93  E-value=6e-05  Score=53.90  Aligned_cols=74  Identities=14%  Similarity=0.064  Sum_probs=51.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH-h----cC-CCEEEeCCCCccccccCCCCCcccEEEe
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK-S----LG-ADEVLDYKTPDGAALKSPSGRKYDAVIH  138 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~-~----~g-~~~v~~~~~~~~~~~~~~~~~~~d~v~d  138 (240)
                      +|++++|+||+|++|..+++.+...|++|+.+.++ ++.+.+. +    .. .....|..+..  .++.. -.++|++|+
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~-~~~iDilin   98 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDA--SRAEA-VKGAHFVFT   98 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHH--HHHHH-TTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHH--HHHHH-hcCcCeeee
Confidence            89999999999999999999999999999999975 5544442 2    22 12233333322  11111 146899999


Q ss_pred             CCCC
Q 045248          139 CATG  142 (240)
Q Consensus       139 ~~g~  142 (240)
                      +.|.
T Consensus        99 ~Ag~  102 (191)
T d1luaa1          99 AGAI  102 (191)
T ss_dssp             CCCT
T ss_pred             cCcc
Confidence            9874

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=4.2e-05  Score=56.97  Aligned_cols=75  Identities=23%  Similarity=0.247  Sum_probs=53.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCCEEE--eCCCCc--cccccCCCCCcccEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGADEVL--DYKTPD--GAALKSPSGRKYDAVIHC  139 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~~v~--~~~~~~--~~~~~~~~~~~~d~v~d~  139 (240)
                      .|+++||+||++++|.+.++.+...|++|+.+.++ ++.+.+ ++++....+  |-.+++  .+.++..  +++|+++++
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~--g~iDilVnn   83 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSV--GPVDLLVNN   83 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTC--CCCCEEEEC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHh--CCceEEEec
Confidence            78999999999999999999999999999999975 555544 455543333  322222  1222322  469999999


Q ss_pred             CCC
Q 045248          140 ATG  142 (240)
Q Consensus       140 ~g~  142 (240)
                      .|.
T Consensus        84 Ag~   86 (244)
T d1pr9a_          84 AAV   86 (244)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            984

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.72  E-value=9.5e-05  Score=54.90  Aligned_cols=75  Identities=21%  Similarity=0.156  Sum_probs=53.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCCEEEe--CCCCc--cccccCCCCCcccEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGADEVLD--YKTPD--GAALKSPSGRKYDAVIHC  139 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~~v~~--~~~~~--~~~~~~~~~~~~d~v~d~  139 (240)
                      .|+++||+||++++|.++++.+...|++|+.+.++ ++.+.+ ++++....+.  -.+++  .+.++..  +++|+++++
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~--g~iDilVnn   81 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGI--GPVDLLVNN   81 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTC--CCCSEEEEC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHc--CCCeEEEEC
Confidence            68999999999999999999999999999999975 554444 4555433332  22222  1122322  579999999


Q ss_pred             CCC
Q 045248          140 ATG  142 (240)
Q Consensus       140 ~g~  142 (240)
                      +|.
T Consensus        82 Ag~   84 (242)
T d1cyda_          82 AAL   84 (242)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            983

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.62  E-value=0.00014  Score=53.61  Aligned_cols=73  Identities=25%  Similarity=0.333  Sum_probs=51.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEEE-eCCCCccccccCCCCCcccEEEeCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVL-DYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      +|+++||+||++++|.++++.+...|++|+.+.++  .+.+++.+...+. |.++.-....+..  +++|+++.++|.
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~--~~~l~~~~~~~~~~Dv~~~~~~~~~~~--g~iD~lVnnAG~   76 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARN--EELLKRSGHRYVVCDLRKDLDLLFEKV--KEVDILVLNAGG   76 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC--HHHHHHTCSEEEECCTTTCHHHHHHHS--CCCSEEEECCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC--HHHHHhcCCcEEEcchHHHHHHHHHHh--CCCcEEEecccc
Confidence            68999999999999999999999999999998865  2445566643322 2222111222222  469999999984

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.60  E-value=0.0002  Score=49.88  Aligned_cols=72  Identities=11%  Similarity=0.225  Sum_probs=50.7

Q ss_pred             HHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHHHH-HhcCCCEEEeCCCCccccccCC
Q 045248           52 ALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNIEFV-KSLGADEVLDYKTPDGAALKSP  128 (240)
Q Consensus        52 ~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~~~-~~~g~~~v~~~~~~~~~~~~~~  128 (240)
                      ++ +..++     .++++|+|.| +||.+.+++..++..|+ ++..+.|+ ++.+.+ +.++... ++..          
T Consensus         8 ~l-~~~~~-----~~~~~vlIlG-aGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~-~~~~----------   69 (167)
T d1npya1           8 LI-EKYHL-----NKNAKVIVHG-SGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAY-INSL----------   69 (167)
T ss_dssp             HH-HHTTC-----CTTSCEEEEC-SSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEE-ESCC----------
T ss_pred             HH-HHcCC-----CCCCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhh-hhcc----------
Confidence            44 55555     5778999999 89999999999999998 77777775 555544 4454322 2211          


Q ss_pred             CCCcccEEEeCCC
Q 045248          129 SGRKYDAVIHCAT  141 (240)
Q Consensus       129 ~~~~~d~v~d~~g  141 (240)
                      ....+|++++|+.
T Consensus        70 ~~~~~DliINaTp   82 (167)
T d1npya1          70 ENQQADILVNVTS   82 (167)
T ss_dssp             TTCCCSEEEECSS
T ss_pred             cccchhhheeccc
Confidence            1245899999975

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.57  E-value=0.00011  Score=54.51  Aligned_cols=77  Identities=22%  Similarity=0.324  Sum_probs=53.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCCEEE-eCCCCc--cccccC--CCCCcccEEEe
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGADEVL-DYKTPD--GAALKS--PSGRKYDAVIH  138 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~~v~-~~~~~~--~~~~~~--~~~~~~d~v~d  138 (240)
                      .|+++||+||++++|.+.++.+...|++|+.+.++ ++.+.+ ++++...+. |-.+++  ...++.  ..-+++|++++
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVn   83 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVVH   83 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCceEEEE
Confidence            68999999999999999999999999999999975 555544 455553321 223222  111111  11246999999


Q ss_pred             CCCC
Q 045248          139 CATG  142 (240)
Q Consensus       139 ~~g~  142 (240)
                      ++|.
T Consensus        84 nAG~   87 (242)
T d1ulsa_          84 YAGI   87 (242)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            9983

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.55  E-value=0.00023  Score=53.30  Aligned_cols=77  Identities=16%  Similarity=0.139  Sum_probs=53.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHH----HHHhcCCCEEE---eCCCCc--cc---cccCCCCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIE----FVKSLGADEVL---DYKTPD--GA---ALKSPSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~----~~~~~g~~~v~---~~~~~~--~~---~~~~~~~~~  132 (240)
                      +|+++||+||++++|.++++.+...|++|+.++++ ++.+    .+++.+.....   |-.+.+  ..   .+....+..
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g~   84 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGK   84 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            78999999999999999999999999999999975 4433    33455654322   222222  11   112223456


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.++|.
T Consensus        85 idilinnag~   94 (258)
T d1ae1a_          85 LNILVNNAGV   94 (258)
T ss_dssp             CCEEEECCCC
T ss_pred             cEEEeccccc
Confidence            9999999984

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=97.52  E-value=0.00025  Score=53.14  Aligned_cols=77  Identities=17%  Similarity=0.114  Sum_probs=52.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCCEE-E--eCCCCc--cccc---cCCCCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGADEV-L--DYKTPD--GAAL---KSPSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~~v-~--~~~~~~--~~~~---~~~~~~~  132 (240)
                      .|+++||+||++++|.++++.+...|++|+.+.++ ++.+.+    ++.|.... +  |-.+++  ...+   ....+.+
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~~   86 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGK   86 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCCC
Confidence            78999999999999999999999999999999875 444333    34454322 2  222222  1111   1222346


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++++.|.
T Consensus        87 idilvnnAG~   96 (259)
T d2ae2a_          87 LNILVNNAGI   96 (259)
T ss_dssp             CCEEEECCCC
T ss_pred             ceEEEECCce
Confidence            9999999983

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=0.00091  Score=46.52  Aligned_cols=90  Identities=14%  Similarity=0.094  Sum_probs=57.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcC---CCEEEeCCCCccccccCCCCCcccEEEeC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLG---ADEVLDYKTPDGAALKSPSGRKYDAVIHC  139 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g---~~~v~~~~~~~~~~~~~~~~~~~d~v~d~  139 (240)
                      .++++|||.| +||.+.+++..+...|++++.+.|+ ++.+.+ +.+.   ....+...        ......+|++++|
T Consensus        16 ~~~k~vlIlG-aGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~--------~~~~~~~dliIN~   86 (170)
T d1nyta1          16 RPGLRILLIG-AGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMD--------ELEGHEFDLIINA   86 (170)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSG--------GGTTCCCSEEEEC
T ss_pred             CCCCEEEEEC-CcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccc--------cccccccceeecc
Confidence            5789999999 8999999999999999997777775 554444 3333   11111111        1123568999999


Q ss_pred             CCC----CCccccccCCCCCcEEEEeCC
Q 045248          140 ATG----IPWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       140 ~g~----~~~~~~~~~l~~~G~iv~~g~  163 (240)
                      +..    .....-...++++..++.+-.
T Consensus        87 Tp~G~~~~~~~~~~~~~~~~~~v~D~vY  114 (170)
T d1nyta1          87 TSSGISGDIPAIPSSLIHPGIYCYDMFY  114 (170)
T ss_dssp             CSCGGGTCCCCCCGGGCCTTCEEEESCC
T ss_pred             cccCcccCCCCCcHHHhccCcEEEEeec
Confidence            852    111222345677777766653

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=9.3e-05  Score=55.06  Aligned_cols=77  Identities=16%  Similarity=0.133  Sum_probs=51.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCcccccc--CCCCCcccEEEeCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALK--SPSGRKYDAVIHCATG  142 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~--~~~~~~~d~v~d~~g~  142 (240)
                      .|+++||+||++++|.+.++.+...|++|+.+.++ ++.+.+.+.........+.......+  ...-.++|.++++.|.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~id~lVn~ag~   84 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLFNVAGF   84 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhccCCceeeeeccccccccccccccccceeEEecccc
Confidence            78999999999999999999999999999999975 55555544332222211111111110  1112479999999984

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=0.00064  Score=46.64  Aligned_cols=103  Identities=15%  Similarity=0.040  Sum_probs=72.7

Q ss_pred             HHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccC
Q 045248           49 AHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKS  127 (240)
Q Consensus        49 a~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~  127 (240)
                      .+.++.+..++.    -.|++++|+| -|-+|....+.++.+|++|++++.+ .+.-.+..-|.. +....    ...  
T Consensus        10 ~~~~~~r~t~~~----l~Gk~v~V~G-yG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~-v~~~~----~a~--   77 (163)
T d1li4a1          10 LIDGIKRATDVM----IAGKVAVVAG-YGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYE-VTTMD----EAC--   77 (163)
T ss_dssp             HHHHHHHHHCCC----CTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCHH----HHT--
T ss_pred             HHHHHHHHhCce----ecCCEEEEec-cccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceE-eeehh----hhh--
Confidence            444554555553    3899999999 9999999999999999999999964 443333334432 22111    111  


Q ss_pred             CCCCcccEEEeCCCCCC--ccccccCCCCCcEEEEeCCCch
Q 045248          128 PSGRKYDAVIHCATGIP--WSTFEPNLGTNGKVIDITPGPS  166 (240)
Q Consensus       128 ~~~~~~d~v~d~~g~~~--~~~~~~~l~~~G~iv~~g~~~~  166 (240)
                         ...|+++-+.|+..  -..-++.++++..+..+|....
T Consensus        78 ---~~adivvtaTGn~~vI~~eh~~~MKdgaIL~N~Ghfd~  115 (163)
T d1li4a1          78 ---QEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDV  115 (163)
T ss_dssp             ---TTCSEEEECSSCSCSBCHHHHTTCCTTEEEEECSSSTT
T ss_pred             ---hhccEEEecCCCccchhHHHHHhccCCeEEEEeccccc
Confidence               33689999999743  4577889999999999986544

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.00013  Score=54.48  Aligned_cols=76  Identities=17%  Similarity=0.156  Sum_probs=52.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH-hcCCCEEE--eCCCCc--cccccC--CCCCcccEEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK-SLGADEVL--DYKTPD--GAALKS--PSGRKYDAVI  137 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~-~~g~~~v~--~~~~~~--~~~~~~--~~~~~~d~v~  137 (240)
                      .|+++||+||++++|.+.++.+...|++|+.+.++ ++.+.+. +++....+  |-.+++  ...++.  ..-.++|+++
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDilV   84 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVV   84 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            78999999999999999999999999999999975 5666554 44432222  222222  111111  1124699999


Q ss_pred             eCCC
Q 045248          138 HCAT  141 (240)
Q Consensus       138 d~~g  141 (240)
                      .++|
T Consensus        85 nnAG   88 (250)
T d1ydea1          85 NNAG   88 (250)
T ss_dssp             ECCC
T ss_pred             eccc
Confidence            9998

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.47  E-value=0.00012  Score=53.13  Aligned_cols=98  Identities=20%  Similarity=0.213  Sum_probs=64.0

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC--CEEEEEeCc-ccHHHH----HhcCCCEEEeCCCCccccccC
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN--THVTASCGA-RNIEFV----KSLGADEVLDYKTPDGAALKS  127 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g--~~v~~~~~~-~~~~~~----~~~g~~~v~~~~~~~~~~~~~  127 (240)
                      +.+++     ++|++||-+| +| .|..+..+++..|  .+|++++.+ +..+.+    +..+...+..... +... ..
T Consensus        69 ~~l~l-----~~g~~VLdiG-~G-tG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~-d~~~-~~  139 (213)
T d1dl5a1          69 EWVGL-----DKGMRVLEIG-GG-TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCG-DGYY-GV  139 (213)
T ss_dssp             HHTTC-----CTTCEEEEEC-CT-TSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES-CGGG-CC
T ss_pred             Hhhhc-----cccceEEEec-Cc-cchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccC-chHH-cc
Confidence            77778     9999999999 44 3777888888776  389999854 544444    3445443321111 1111 01


Q ss_pred             CCCCcccEEEeCCCCCC-ccccccCCCCCcEEEEe
Q 045248          128 PSGRKYDAVIHCATGIP-WSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       128 ~~~~~~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~  161 (240)
                      .....||.|+.+.+-+. .+..++.|+|||+++..
T Consensus       140 ~~~~~fD~I~~~~~~~~~p~~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         140 PEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVP  174 (213)
T ss_dssp             GGGCCEEEEEECSBBSCCCHHHHHHEEEEEEEEEE
T ss_pred             ccccchhhhhhhccHHHhHHHHHHhcCCCcEEEEE
Confidence            12346999998776544 45678899999999874

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.45  E-value=0.00012  Score=53.22  Aligned_cols=98  Identities=20%  Similarity=0.166  Sum_probs=65.5

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-c----cHHHHHhcCCCEEEeCCCCccccccCCC
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-R----NIEFVKSLGADEVLDYKTPDGAALKSPS  129 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~----~~~~~~~~g~~~v~~~~~~~~~~~~~~~  129 (240)
                      +.+.+     +++++||.+|  +|.|..++-+++..|.+|+++... +    ..+.++++|.+.+.........  ....
T Consensus        72 ~~L~l-----~~g~~VLeIG--sGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~--g~~~  142 (215)
T d1jg1a_          72 EIANL-----KPGMNILEVG--TGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSK--GFPP  142 (215)
T ss_dssp             HHHTC-----CTTCCEEEEC--CTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG--CCGG
T ss_pred             Hhhcc-----CccceEEEec--CCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECcccc--CCcc
Confidence            66777     8999999998  456777777787778889888864 3    2344456776544322111111  1123


Q ss_pred             CCcccEEEeCCCCCC-ccccccCCCCCcEEEEe
Q 045248          130 GRKYDAVIHCATGIP-WSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       130 ~~~~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~  161 (240)
                      ...||.|+-+.+-+. -...++.|++||++|..
T Consensus       143 ~~pfD~Iiv~~a~~~ip~~l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         143 KAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIP  175 (215)
T ss_dssp             GCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             cCcceeEEeecccccCCHHHHHhcCCCCEEEEE
Confidence            467999988776544 46778899999999864

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.44  E-value=0.00012  Score=54.86  Aligned_cols=77  Identities=13%  Similarity=0.127  Sum_probs=53.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHH-HHHhcCCCEEE---eCCCCc--cccccC--CCCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIE-FVKSLGADEVL---DYKTPD--GAALKS--PSGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~-~~~~~g~~~v~---~~~~~~--~~~~~~--~~~~~~d~v  136 (240)
                      +|++++|+||++|+|.++++.+...|++|+.+.++ ++.+ .++++|.....   |-.+++  ...++.  ..-.++|++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDil   83 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGPAACAIALDVTDQASIDRCVAELLDRWGSIDIL   83 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHHhCCccEE
Confidence            68999999999999999999999999999999975 5443 44677754332   222222  111111  112479999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      +.+.|.
T Consensus        84 VnnAg~   89 (256)
T d1k2wa_          84 VNNAAL   89 (256)
T ss_dssp             EECCCC
T ss_pred             Eeeccc
Confidence            999983

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=97.43  E-value=0.00018  Score=53.55  Aligned_cols=77  Identities=17%  Similarity=0.160  Sum_probs=55.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEE-EeCCCCc--cccccC--CCCCcccEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEV-LDYKTPD--GAALKS--PSGRKYDAVIHC  139 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v-~~~~~~~--~~~~~~--~~~~~~d~v~d~  139 (240)
                      .|+++||+||++++|.+.++.+...|++|+.+.++ +..+.+++.+...+ .|-.+.+  ...++.  ..-+++|+++.+
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVnn   83 (248)
T d2d1ya1           4 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLVNN   83 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEEEe
Confidence            78999999999999999999999999999999965 66677777775422 1222222  111111  112579999999


Q ss_pred             CCC
Q 045248          140 ATG  142 (240)
Q Consensus       140 ~g~  142 (240)
                      +|.
T Consensus        84 AG~   86 (248)
T d2d1ya1          84 AAI   86 (248)
T ss_dssp             CCC
T ss_pred             CcC
Confidence            983

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=0.00019  Score=53.62  Aligned_cols=77  Identities=18%  Similarity=0.199  Sum_probs=52.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH----HHhcCCCEEE-e--CCCCc--cccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF----VKSLGADEVL-D--YKTPD--GAALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~----~~~~g~~~v~-~--~~~~~--~~~~~~--~~~~~~  133 (240)
                      .|+++||+||++++|.+.++.+...|++|+.+.++ ++.+.    +++.|..... .  -.+++  ...++.  ..-+++
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~i   89 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKV   89 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            78999999999999999999999999999999965 44433    3456644322 2  22221  111111  112469


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.++|.
T Consensus        90 DilvnnAG~   98 (255)
T d1fmca_          90 DILVNNAGG   98 (255)
T ss_dssp             CEEEECCCC
T ss_pred             CEeeeCCcC
Confidence            999999984

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.41  E-value=0.00013  Score=55.52  Aligned_cols=98  Identities=10%  Similarity=0.021  Sum_probs=63.7

Q ss_pred             HHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHH----hcCCCEEEeCCCCcccccc
Q 045248           52 ALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVK----SLGADEVLDYKTPDGAALK  126 (240)
Q Consensus        52 ~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~----~~g~~~v~~~~~~~~~~~~  126 (240)
                      .+.+.+++     ++|++||=+|  .|.|..++.+|+..|++|++++- ++..++++    +.|...-+.....+.... 
T Consensus        53 ~~~~~l~l-----~~G~~VLDiG--CG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~-  124 (285)
T d1kpga_          53 LALGKLGL-----QPGMTLLDVG--CGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF-  124 (285)
T ss_dssp             HHHTTTTC-----CTTCEEEEET--CTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC-
T ss_pred             HHHHHcCC-----CCCCEEEEec--CcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc-
Confidence            45577888     9999999998  45778888999999999999995 46666554    344221111111111111 


Q ss_pred             CCCCCcccEEE-----eCCCCCC----ccccccCCCCCcEEEE
Q 045248          127 SPSGRKYDAVI-----HCATGIP----WSTFEPNLGTNGKVID  160 (240)
Q Consensus       127 ~~~~~~~d~v~-----d~~g~~~----~~~~~~~l~~~G~iv~  160 (240)
                         +..||.|+     +.+|...    +..+.+.|+|+|+++.
T Consensus       125 ---~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l  164 (285)
T d1kpga_         125 ---DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLL  164 (285)
T ss_dssp             ---CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEE
T ss_pred             ---cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEE
Confidence               24677764     3444432    6667789999999875

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.40  E-value=0.00036  Score=48.08  Aligned_cols=70  Identities=19%  Similarity=0.316  Sum_probs=50.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-cc-HHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RN-IEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~-~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      .+.++||+| +|.+|...++.+...|+ +++++.++ ++ .+.++++|. .++++.+.. ..+     ..+|+||.|++.
T Consensus        23 ~~~~ilviG-aG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~-~~~~~~~~~-~~l-----~~~Divi~atss   94 (159)
T d1gpja2          23 HDKTVLVVG-AGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG-EAVRFDELV-DHL-----ARSDVVVSATAA   94 (159)
T ss_dssp             TTCEEEEES-CCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC-EECCGGGHH-HHH-----HTCSEEEECCSS
T ss_pred             ccCeEEEEC-CCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhc-ccccchhHH-HHh-----ccCCEEEEecCC
Confidence            789999999 79999999999999999 67777775 44 456677774 344333211 111     359999999986


Q ss_pred             C
Q 045248          143 I  143 (240)
Q Consensus       143 ~  143 (240)
                      +
T Consensus        95 ~   95 (159)
T d1gpja2          95 P   95 (159)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=97.37  E-value=0.00018  Score=53.74  Aligned_cols=77  Identities=19%  Similarity=0.119  Sum_probs=53.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH-HHhcCCCEEEeCC---CCc--cccccC--CCCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF-VKSLGADEVLDYK---TPD--GAALKS--PSGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~-~~~~g~~~v~~~~---~~~--~~~~~~--~~~~~~d~v  136 (240)
                      +|+++||+||++++|.++++.+...|++|+.++++ ++.+. .++++....+-..   ++.  ...++.  ..-.++|++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDil   84 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVL   84 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCCeE
Confidence            78999999999999999999999999999999875 55444 4567755443222   211  111111  112578999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      +.++|.
T Consensus        85 VnnAG~   90 (253)
T d1hxha_          85 VNNAGI   90 (253)
T ss_dssp             EECCCC
T ss_pred             Eecccc
Confidence            999983

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.36  E-value=0.00025  Score=52.64  Aligned_cols=77  Identities=17%  Similarity=0.127  Sum_probs=52.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCCEE-E--eCCCCc--cccccC--CCCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGADEV-L--DYKTPD--GAALKS--PSGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~~v-~--~~~~~~--~~~~~~--~~~~~~d~v  136 (240)
                      .|+++||+||++++|.++++.+...|++|+.+.++ ++.+.+ ++++.... +  |-.+++  ...++.  ..-.++|++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~idil   84 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVL   84 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHHhCCCeEE
Confidence            78999999999999999999999999999999975 555444 45553222 2  222222  111111  112469999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      +.++|.
T Consensus        85 innAG~   90 (244)
T d1nffa_          85 VNNAGI   90 (244)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            999984

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.36  E-value=0.00013  Score=54.39  Aligned_cols=76  Identities=20%  Similarity=0.195  Sum_probs=50.8

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCC--EEEEEeCc-ccHHHHHhcCCC--EEE--eCCCCc-c----ccc-cCCCCCcc
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNT--HVTASCGA-RNIEFVKSLGAD--EVL--DYKTPD-G----AAL-KSPSGRKY  133 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~~~-~~~~~~~~~g~~--~v~--~~~~~~-~----~~~-~~~~~~~~  133 (240)
                      .++|||+||++|+|.++++.+...|+  +|+.++++ ++.+.+++....  .++  |-.+.+ .    ..+ +..+..++
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~~i   82 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGL   82 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHHHHHhCCCCe
Confidence            48999999999999999988887886  78888875 677777664432  222  222221 1    111 12233569


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.++|.
T Consensus        83 dilinnAG~   91 (250)
T d1yo6a1          83 SLLINNAGV   91 (250)
T ss_dssp             CEEEECCCC
T ss_pred             EEEEEcCcc
Confidence            999999984

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.35  E-value=0.00022  Score=53.43  Aligned_cols=77  Identities=19%  Similarity=0.181  Sum_probs=51.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCCE-EE--eCCCCc--ccccc---CCCCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGADE-VL--DYKTPD--GAALK---SPSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~~-v~--~~~~~~--~~~~~---~~~~~~  132 (240)
                      +|+++||+||++++|.++++.+...|++|+.+.++ ++.+.+    ++.+... .+  |-.+++  ...++   ...+..
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g~   86 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGK   86 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhCCC
Confidence            78999999999999999999999999999999875 444433    3334322 22  222222  11111   122346


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|++++++|.
T Consensus        87 idilvnnAG~   96 (259)
T d1xq1a_          87 LDILINNLGA   96 (259)
T ss_dssp             CSEEEEECCC
T ss_pred             cccccccccc
Confidence            9999999983

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.33  E-value=0.00028  Score=52.52  Aligned_cols=77  Identities=19%  Similarity=0.198  Sum_probs=51.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH-----HHhcCCCEE-E--eCCCCc--cccccC--CCCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF-----VKSLGADEV-L--DYKTPD--GAALKS--PSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~-----~~~~g~~~v-~--~~~~~~--~~~~~~--~~~~~  132 (240)
                      +|+++||+||++++|.+.++.+...|++|+.+.++ ++.+.     .++.|.... +  |-.+++  ...++.  ..-++
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   83 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGK   83 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            68999999999999999999999999999999965 44322     234565432 2  222222  111111  11247


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.++|.
T Consensus        84 iDiLVnnAG~   93 (251)
T d1vl8a_          84 LDTVVNAAGI   93 (251)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999983

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.00047  Score=51.05  Aligned_cols=77  Identities=17%  Similarity=0.132  Sum_probs=52.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCCEE-E--eCCCCc--cccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGADEV-L--DYKTPD--GAALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~~v-~--~~~~~~--~~~~~~--~~~~~~  133 (240)
                      .|+.+||+||++|+|...+.-+...|++|+.++++ ++++.+    ++.|.... +  |.++.+  ...++.  ...+++
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g~i   85 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDV   85 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence            78999999999999999999999999999999975 554433    45554422 2  222222  111110  123469


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.++|.
T Consensus        86 dilinnag~   94 (244)
T d1yb1a_          86 SILVNNAGV   94 (244)
T ss_dssp             SEEEECCCC
T ss_pred             ceeEeeccc
Confidence            999999984

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=0.00029  Score=52.23  Aligned_cols=77  Identities=22%  Similarity=0.268  Sum_probs=52.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCCE-E--EeCCCCc--cccccC--CCCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGADE-V--LDYKTPD--GAALKS--PSGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~~-v--~~~~~~~--~~~~~~--~~~~~~d~v  136 (240)
                      +|++++|+||++++|.+.++.+...|++|+.+.++ ++.+.+ ++++... .  .|-.+++  ...++.  ..-.++|++
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil   82 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVDIL   82 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHTCSCSEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcccCCccee
Confidence            68999999999999999999999999999999875 555444 4555331 1  2222222  111111  122579999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      ++++|.
T Consensus        83 VnnAg~   88 (243)
T d1q7ba_          83 VNNAGI   88 (243)
T ss_dssp             EECCCC
T ss_pred             hhhhhh
Confidence            999983

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=97.29  E-value=0.00022  Score=53.20  Aligned_cols=77  Identities=16%  Similarity=0.144  Sum_probs=52.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHH-HHHhcCCCEE-E--eCCCCc--cccccC--CCCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIE-FVKSLGADEV-L--DYKTPD--GAALKS--PSGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~-~~~~~g~~~v-~--~~~~~~--~~~~~~--~~~~~~d~v  136 (240)
                      +|+++||+||++++|.+.++.+...|++|+.+.++ ++.+ ..++++.... +  |-.+++  ...++.  ..-+++|++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil   83 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDGL   83 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHcCCccEE
Confidence            78999999999999999999999999999999975 4443 3456664322 2  222222  111111  112479999


Q ss_pred             EeCCCC
Q 045248          137 IHCATG  142 (240)
Q Consensus       137 ~d~~g~  142 (240)
                      +.++|.
T Consensus        84 VnnAg~   89 (254)
T d1hdca_          84 VNNAGI   89 (254)
T ss_dssp             EECCCC
T ss_pred             EecCcc
Confidence            999983

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.29  E-value=1.9e-05  Score=58.52  Aligned_cols=35  Identities=23%  Similarity=0.263  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      +|++|||+||++++|.++++.+...|++|+.+...
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~   35 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVV   35 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            47999999999999999999999999999988754

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=0.00024  Score=52.61  Aligned_cols=103  Identities=17%  Similarity=0.118  Sum_probs=65.9

Q ss_pred             HHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCCEEEeCCCCcccc
Q 045248           50 HQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGADEVLDYKTPDGAA  124 (240)
Q Consensus        50 ~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~~v~~~~~~~~~~  124 (240)
                      +..+.+.+++     ++|++||=+| + |.|..+..+++..|++|++++.+ +..+.+    ++.|...-+.....+...
T Consensus        22 ~~~l~~~~~l-----~pg~~VLDiG-C-G~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~   94 (245)
T d1nkva_          22 YATLGRVLRM-----KPGTRILDLG-S-GSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG   94 (245)
T ss_dssp             HHHHHHHTCC-----CTTCEEEEET-C-TTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT
T ss_pred             HHHHHHHcCC-----CCCCEEEEEc-C-CCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhh
Confidence            3445588888     8999999888 3 34556777888889999999954 544444    345643212221112111


Q ss_pred             ccCCCCCcccEEEeCCC-----C--CCccccccCCCCCcEEEEe
Q 045248          125 LKSPSGRKYDAVIHCAT-----G--IPWSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       125 ~~~~~~~~~d~v~d~~g-----~--~~~~~~~~~l~~~G~iv~~  161 (240)
                      .  .....||.|+-.-.     .  ..+..+.+.|+|||+++..
T Consensus        95 ~--~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~  136 (245)
T d1nkva_          95 Y--VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIG  136 (245)
T ss_dssp             C--CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEE
T ss_pred             c--cccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEE
Confidence            1  24567999874322     2  1267788999999998765

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=97.28  E-value=6.9e-05  Score=53.90  Aligned_cols=55  Identities=7%  Similarity=0.019  Sum_probs=39.9

Q ss_pred             CCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEc
Q 045248           12 NGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTA   74 (240)
Q Consensus        12 ~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G   74 (240)
                      ..|+|+||+++++.+++++|++++++.+++...++.+..... ..  +     .+|++|.|+.
T Consensus       142 ~~G~fAEy~~v~~~~~~~~p~~~~~e~l~~~~~~~~~v~~g~-~~--l-----~~G~~VaVi~  196 (198)
T d2jhfa1         142 GTSTFSQYTVVDEISVAKIDAAFALDPLITHVLPFEKINEGF-DL--L-----RSGESIRTIL  196 (198)
T ss_dssp             TTCCSBSEEEEEGGGEEECCTTSCCGGGEEEEEEGGGHHHHH-HH--H-----HTTCCSEEEE
T ss_pred             CCCcccCeEEeCHHHeEECCCCCCHHHHHHHHHHHHhhhhCC-ce--e-----eCCCEEEEEE
Confidence            359999999999999999999999887766544433333333 12  3     6888888764

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=97.27  E-value=0.00034  Score=52.35  Aligned_cols=77  Identities=19%  Similarity=0.134  Sum_probs=51.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCCEE-E--eCCCCc--cccccC--CCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGADEV-L--DYKTPD--GAALKS--PSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~~v-~--~~~~~~--~~~~~~--~~~~~~  133 (240)
                      .|+++||+||++++|.++++.+...|++|+.+.++ ++.+.+    ++.|.... +  |-.+++  ...++.  ..-+++
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   83 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKI   83 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            78999999999999999999999999999999865 444433    44554322 2  222222  111111  112469


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++++.|.
T Consensus        84 DilVnnaG~   92 (260)
T d1zema1          84 DFLFNNAGY   92 (260)
T ss_dssp             CEEEECCCC
T ss_pred             Ceehhhhcc
Confidence            999999883

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=9.8e-05  Score=53.25  Aligned_cols=74  Identities=20%  Similarity=0.093  Sum_probs=49.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      .++|+|+||+|.+|..+++.+...|.+|.+++++ ++.+.....+.. ++..+-.+...+... -.+.|+||.++|.
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~-~~~gD~~d~~~l~~a-l~~~d~vi~~~g~   77 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAH-VVVGDVLQAADVDKT-VAGQDAVIVLLGT   77 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSE-EEESCTTSHHHHHHH-HTTCSEEEECCCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccc-cccccccchhhHHHH-hcCCCEEEEEecc
Confidence            4789999999999999999888899999999974 554433333433 333222222222111 1358999999984

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=97.25  E-value=0.00053  Score=51.27  Aligned_cols=77  Identities=18%  Similarity=0.209  Sum_probs=51.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-----HhcCCCEE-E--eCCCCc--cccccC--CCCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-----KSLGADEV-L--DYKTPD--GAALKS--PSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-----~~~g~~~v-~--~~~~~~--~~~~~~--~~~~~  132 (240)
                      .|+++||+||++++|.++++.+...|++|+.+.++ ++.+.+     ++.|.... +  |-.+++  ...++.  ..-++
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   87 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGP   87 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            68999999999999999999999999999999964 444322     34564422 2  222222  111111  12257


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.+.|.
T Consensus        88 iDilVnnAg~   97 (260)
T d1h5qa_          88 ISGLIANAGV   97 (260)
T ss_dssp             EEEEEECCCC
T ss_pred             CcEecccccc
Confidence            9999999983

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=97.25  E-value=0.00055  Score=52.05  Aligned_cols=77  Identities=16%  Similarity=0.170  Sum_probs=51.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-----HhcCCCE-EEeCCCCccc----cc--cCCCCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-----KSLGADE-VLDYKTPDGA----AL--KSPSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-----~~~g~~~-v~~~~~~~~~----~~--~~~~~~~  132 (240)
                      +|+++||+||++++|.++++.+...|++|+.+.++ ++.+.+     ++.|... .+..+-.+..    ..  ......+
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~  103 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGH  103 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhccc
Confidence            68999999999999999999999999999999975 443222     3345432 3322222211    11  1123467


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.+.|.
T Consensus       104 iDilvnnAg~  113 (294)
T d1w6ua_         104 PNIVINNAAG  113 (294)
T ss_dssp             CSEEEECCCC
T ss_pred             cchhhhhhhh
Confidence            9999999984

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.22  E-value=0.0008  Score=51.08  Aligned_cols=100  Identities=7%  Similarity=0.018  Sum_probs=64.2

Q ss_pred             HHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCCEEEeCCCCcccc
Q 045248           50 HQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGADEVLDYKTPDGAA  124 (240)
Q Consensus        50 ~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~~v~~~~~~~~~~  124 (240)
                      +..+.+.+++     ++|++||=+| + |.|..+..+|+.+|++|++++-+ +..+++    ++.|....+.....+.. 
T Consensus        50 ~~~~~~~l~l-----~~G~~VLDiG-C-G~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~-  121 (291)
T d1kpia_          50 RKLALDKLNL-----EPGMTLLDIG-C-GWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE-  121 (291)
T ss_dssp             HHHHHHTTCC-----CTTCEEEEET-C-TTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG-
T ss_pred             HHHHHHhcCC-----CCCCEEEEec-C-cchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc-
Confidence            3345588888     9999999998 4 45566788999999999998844 544444    45564322222111111 


Q ss_pred             ccCCCCCcccEEEe-----CCCCC-----------CccccccCCCCCcEEEE
Q 045248          125 LKSPSGRKYDAVIH-----CATGI-----------PWSTFEPNLGTNGKVID  160 (240)
Q Consensus       125 ~~~~~~~~~d~v~d-----~~g~~-----------~~~~~~~~l~~~G~iv~  160 (240)
                         ...+.||.|+-     .++..           .+..+.+.|+|||+++.
T Consensus       122 ---~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l  170 (291)
T d1kpia_         122 ---EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLL  170 (291)
T ss_dssp             ---GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEE
T ss_pred             ---ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEE
Confidence               12356888753     33321           25667889999999874

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.20  E-value=0.00088  Score=49.89  Aligned_cols=76  Identities=16%  Similarity=0.164  Sum_probs=50.8

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH----HHhcCCCEEE---eCCCCc--cccccC--CCCCccc
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF----VKSLGADEVL---DYKTPD--GAALKS--PSGRKYD  134 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~----~~~~g~~~v~---~~~~~~--~~~~~~--~~~~~~d  134 (240)
                      |+.+||+||++|+|.+.++.+...|++|+.+.++ ++.+.    +++.|.....   |-.+++  ...++.  ..-.++|
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD   81 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVD   81 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence            6778999999999999999999999999999975 44433    3455644322   222222  111111  1225699


Q ss_pred             EEEeCCCC
Q 045248          135 AVIHCATG  142 (240)
Q Consensus       135 ~v~d~~g~  142 (240)
                      ++++++|.
T Consensus        82 ilVnnAG~   89 (257)
T d2rhca1          82 VLVNNAGR   89 (257)
T ss_dssp             EEEECCCC
T ss_pred             EEEecccc
Confidence            99999983

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.18  E-value=0.00023  Score=53.89  Aligned_cols=100  Identities=7%  Similarity=-0.031  Sum_probs=63.0

Q ss_pred             HHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHH----hcCCCEEEeCCCCcccc
Q 045248           50 HQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVK----SLGADEVLDYKTPDGAA  124 (240)
Q Consensus        50 ~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~----~~g~~~v~~~~~~~~~~  124 (240)
                      +..+.+..++     ++|++||=+| +| .|-.+..+++..|++|++++- ++..++++    +.|....+.....+...
T Consensus        41 ~~~~~~~l~l-----~~g~~VLDiG-CG-~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~  113 (280)
T d2fk8a1          41 VDLNLDKLDL-----KPGMTLLDIG-CG-WGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED  113 (280)
T ss_dssp             HHHHHTTSCC-----CTTCEEEEES-CT-TSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG
T ss_pred             HHHHHHHcCC-----CCCCEEEEec-CC-chHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh
Confidence            3345577788     8999999999 55 344567788888999999995 46655553    44532222111111111


Q ss_pred             ccCCCCCcccEEE-----eCCCCC----CccccccCCCCCcEEEE
Q 045248          125 LKSPSGRKYDAVI-----HCATGI----PWSTFEPNLGTNGKVID  160 (240)
Q Consensus       125 ~~~~~~~~~d~v~-----d~~g~~----~~~~~~~~l~~~G~iv~  160 (240)
                          ....||.|+     +.++.+    .+..+.+.|+|+|+++.
T Consensus       114 ----~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i  154 (280)
T d2fk8a1         114 ----FAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTV  154 (280)
T ss_dssp             ----CCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred             ----hccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEE
Confidence                124688884     333433    16667889999999875

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=97.17  E-value=0.00077  Score=49.95  Aligned_cols=77  Identities=16%  Similarity=0.188  Sum_probs=52.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-c--cHHHHHhcCCCEEE---eCCCCc--cccccC--CCCCcccE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-R--NIEFVKSLGADEVL---DYKTPD--GAALKS--PSGRKYDA  135 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~--~~~~~~~~g~~~v~---~~~~~~--~~~~~~--~~~~~~d~  135 (240)
                      +|+.+||+||++++|.++++.+...|++|+.+.++ +  ..+.+++.|.....   |-.+++  ...++.  ..-+++|+
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~iDi   83 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCDI   83 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            68999999999999999999999999999999864 2  23444677754322   222222  111111  11257999


Q ss_pred             EEeCCCC
Q 045248          136 VIHCATG  142 (240)
Q Consensus       136 v~d~~g~  142 (240)
                      +++++|.
T Consensus        84 lVnnAG~   90 (247)
T d2ew8a1          84 LVNNAGI   90 (247)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999984

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=97.16  E-value=0.00046  Score=51.66  Aligned_cols=77  Identities=19%  Similarity=0.226  Sum_probs=51.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-c-cH----HHHHhcCCCEEE---eCCCCc--cccccC--CCCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-R-NI----EFVKSLGADEVL---DYKTPD--GAALKS--PSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~-~~----~~~~~~g~~~v~---~~~~~~--~~~~~~--~~~~~  132 (240)
                      +|++++|+||++++|.+.++.+...|++|+.+.++ + ..    +.+++.|.....   |-.+++  ...++.  ..-++
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~   85 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGK   85 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            78999999999999999999999999999999864 2 22    334556643222   222222  111111  11247


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.++|.
T Consensus        86 iDiLVnnAG~   95 (261)
T d1geea_          86 LDVMINNAGL   95 (261)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEeecccee
Confidence            9999999984

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.15  E-value=0.00084  Score=49.85  Aligned_cols=77  Identities=19%  Similarity=0.282  Sum_probs=51.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHH----HHhcCCCEEE---eCCCCc--ccccc--CCCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEF----VKSLGADEVL---DYKTPD--GAALK--SPSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~----~~~~g~~~v~---~~~~~~--~~~~~--~~~~~~~  133 (240)
                      .++.+||+||++|+|.++++.+...|++|+.+.++ ++.+.    +++.|.....   |-.+++  ...++  ....+++
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~i   88 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNV   88 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcCCc
Confidence            67899999999999999999999999999999975 44433    3455643222   222222  11111  1123579


Q ss_pred             cEEEeCCCC
Q 045248          134 DAVIHCATG  142 (240)
Q Consensus       134 d~v~d~~g~  142 (240)
                      |+++.+.|.
T Consensus        89 Dilvnnag~   97 (251)
T d2c07a1          89 DILVNNAGI   97 (251)
T ss_dssp             CEEEECCCC
T ss_pred             eeeeecccc
Confidence            999999983

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00033  Score=52.72  Aligned_cols=41  Identities=27%  Similarity=0.346  Sum_probs=36.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV  106 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~  106 (240)
                      +|+++||+||++|+|.++++.+...|++|+.+.++ ++++.+
T Consensus        13 ~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~   54 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKV   54 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            78999999999999999999999999999999975 555544

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=97.13  E-value=0.00041  Score=51.31  Aligned_cols=76  Identities=29%  Similarity=0.355  Sum_probs=52.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccH-HHHHhcCCCEEE---eCCCCc--cccccC--CCCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNI-EFVKSLGADEVL---DYKTPD--GAALKS--PSGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~-~~~~~~g~~~v~---~~~~~~--~~~~~~--~~~~~~d~v  136 (240)
                      .|+++||+||++++|.+.++-+...|++|+.+.++ ++. +..++++.....   |-++++  .+.++.  ..-.++|+.
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~iDiL   83 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHGV   83 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHhCCccEe
Confidence            78999999999999999999999999999999975 444 444677754332   222221  111111  112469999


Q ss_pred             EeCCC
Q 045248          137 IHCAT  141 (240)
Q Consensus       137 ~d~~g  141 (240)
                      +.++|
T Consensus        84 innAg   88 (241)
T d2a4ka1          84 AHFAG   88 (241)
T ss_dssp             EEGGG
T ss_pred             ccccc
Confidence            99887

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.11  E-value=0.0015  Score=43.29  Aligned_cols=73  Identities=12%  Similarity=0.025  Sum_probs=53.4

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH-hcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK-SLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~-~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      +|+|+| .|.+|..+++.+...|..|++++.+ ++.+.++ +++. .++..+..+...++..+-+..|.++-+++.+
T Consensus         2 ~IvI~G-~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~-~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d   76 (132)
T d1lssa_           2 YIIIAG-IGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDA-LVINGDCTKIKTLEDAGIEDADMYIAVTGKE   76 (132)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSS-EEEESCTTSHHHHHHTTTTTCSEEEECCSCH
T ss_pred             EEEEEC-CCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhh-hhccCcccchhhhhhcChhhhhhhcccCCcH
Confidence            689999 7999999999999999999999965 7777665 4554 4554444333444444446688888887764

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.09  E-value=0.0029  Score=44.16  Aligned_cols=94  Identities=15%  Similarity=0.056  Sum_probs=62.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCc-ccccc-CC----CCCcccEEEeC
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPD-GAALK-SP----SGRKYDAVIHC  139 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~-~~~~~-~~----~~~~~d~v~d~  139 (240)
                      .+++.|+| +|.+|+++...+...|.+|.+.++. ++.+.+++.+........... ..... .+    .-...|+++-+
T Consensus         1 sk~iaIiG-aG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~   79 (184)
T d1bg6a2           1 SKTYAVLG-LGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV   79 (184)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred             CCEEEEEC-ccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE
Confidence            36899999 8999999999999999999999975 777877776643222111111 00000 00    01468999999


Q ss_pred             CCCCC----ccccccCCCCCcEEEEe
Q 045248          140 ATGIP----WSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       140 ~g~~~----~~~~~~~l~~~G~iv~~  161 (240)
                      +....    +.+....+.++-.++..
T Consensus        80 v~~~~~~~~~~~i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          80 VPAIHHASIAANIASYISEGQLIILN  105 (184)
T ss_dssp             SCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             EchhHHHHHHHHhhhccCCCCEEEEe
Confidence            98644    44455667777666654

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=6.8e-05  Score=46.91  Aligned_cols=34  Identities=18%  Similarity=0.116  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ++++|+|+| .|..|+++++++...|++|++.+..
T Consensus         4 ~~K~v~ViG-lG~sG~s~a~~L~~~g~~v~~~D~~   37 (93)
T d2jfga1           4 QGKNVVIIG-LGLTGLSCVDFFLARGVTPRVMDTR   37 (93)
T ss_dssp             TTCCEEEEC-CSHHHHHHHHHHHHTTCCCEEEESS
T ss_pred             CCCEEEEEe-ECHHHHHHHHHHHHCCCEEEEeeCC
Confidence            678999999 8999999999999999999999953

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.08  E-value=0.00055  Score=51.33  Aligned_cols=100  Identities=18%  Similarity=0.133  Sum_probs=66.4

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC--CEEEEEeC-cccHHHH----HhcCCCEEEeCCCCccccccC
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN--THVTASCG-ARNIEFV----KSLGADEVLDYKTPDGAALKS  127 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g--~~v~~~~~-~~~~~~~----~~~g~~~v~~~~~~~~~~~~~  127 (240)
                      ..+++     ++|++||=.| +| .|..+..+|+..|  .+|++++. ++..+.+    +++|....+.....+  ....
T Consensus        97 ~~l~i-----~pG~~VLDiG-~G-sG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d--~~~~  167 (266)
T d1o54a_          97 MMLDV-----KEGDRIIDTG-VG-SGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRD--ISEG  167 (266)
T ss_dssp             HHTTC-----CTTCEEEEEC-CT-TSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCC--GGGC
T ss_pred             HhhCC-----CCCCEEEECC-CC-CCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecc--cccc
Confidence            67788     8999999998 44 3777778888775  59999995 4655555    455542112111111  1112


Q ss_pred             CCCCcccEEEeCCCCC--CccccccCCCCCcEEEEeCC
Q 045248          128 PSGRKYDAVIHCATGI--PWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       128 ~~~~~~d~v~d~~g~~--~~~~~~~~l~~~G~iv~~g~  163 (240)
                      .....+|.|+--+..+  .++.+.+.|+|||+++.+.+
T Consensus       168 ~~~~~~D~V~~d~p~p~~~l~~~~~~LKpGG~lv~~~P  205 (266)
T d1o54a_         168 FDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCP  205 (266)
T ss_dssp             CSCCSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred             ccccceeeeEecCCCHHHHHHHHHhhcCCCCEEEEEeC
Confidence            2345688887766653  38889999999999987644

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.07  E-value=0.00087  Score=49.84  Aligned_cols=77  Identities=17%  Similarity=0.137  Sum_probs=50.4

Q ss_pred             CCCeEEEEcCCc--hHHHHHHHHHHhCCCEEEEEeCcc-cHHHH----HhcCCCEEEeCCCCcc----ccccC--CCCCc
Q 045248           66 QQKNILVTAASG--GVGHYAVQLAKLGNTHVTASCGAR-NIEFV----KSLGADEVLDYKTPDG----AALKS--PSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g--~vG~~~~~~a~~~g~~v~~~~~~~-~~~~~----~~~g~~~v~~~~~~~~----~~~~~--~~~~~  132 (240)
                      .|+++||+||+|  |+|.+.++.+...|++|+.+.+++ ..+.+    +..+....+..+-.+.    ..++.  ..-.+
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   86 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGG   86 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhcCC
Confidence            789999999877  899999999999999998887653 33322    3444444443322221    11111  11246


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|++++++|.
T Consensus        87 iDilVnnag~   96 (256)
T d1ulua_          87 LDYLVHAIAF   96 (256)
T ss_dssp             EEEEEECCCC
T ss_pred             ceEEEecccc
Confidence            9999999873

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.05  E-value=0.00076  Score=50.32  Aligned_cols=77  Identities=21%  Similarity=0.160  Sum_probs=51.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-c-ccH----HHHHhcCCCEEE-eCCCCcc----cccc--CCCCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-A-RNI----EFVKSLGADEVL-DYKTPDG----AALK--SPSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~-~~~----~~~~~~g~~~v~-~~~~~~~----~~~~--~~~~~~  132 (240)
                      .|+++||+||++++|.+.++.+...|++|+.+.+ + +..    +.+++.|.+... ..+-.+.    ..+.  .....+
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   84 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFGG   84 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHcCC
Confidence            6899999999999999999999999999988764 3 332    333566765332 2222121    1111  111246


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.++|.
T Consensus        85 idilinnag~   94 (259)
T d1ja9a_          85 LDFVMSNSGM   94 (259)
T ss_dssp             EEEEECCCCC
T ss_pred             CcEEEecccc
Confidence            9999999984

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00067  Score=50.20  Aligned_cols=47  Identities=15%  Similarity=0.080  Sum_probs=39.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHH-HHHhcCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIE-FVKSLGAD  112 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~-~~~~~g~~  112 (240)
                      +|+.+||+||++|+|.+.++-+...|++|+.+.++ ++.+ .+++++..
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~   52 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNN   52 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC
Confidence            78999999999999999999999999999999964 5544 44666643

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.04  E-value=0.00082  Score=51.37  Aligned_cols=77  Identities=19%  Similarity=0.220  Sum_probs=51.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-c---------cHHH----HHhcCCCEEEeCCCCc--ccccc--C
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-R---------NIEF----VKSLGADEVLDYKTPD--GAALK--S  127 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~---------~~~~----~~~~g~~~v~~~~~~~--~~~~~--~  127 (240)
                      +|+++||+||++|+|.+.++.+...|++|+.++.. +         ..+.    ....+.....+..+.+  ...++  .
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~   85 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTAL   85 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHH
Confidence            78999999999999999999999999999988632 1         1111    2234444445544433  11111  1


Q ss_pred             CCCCcccEEEeCCCC
Q 045248          128 PSGRKYDAVIHCATG  142 (240)
Q Consensus       128 ~~~~~~d~v~d~~g~  142 (240)
                      ...+++|++++++|.
T Consensus        86 ~~~G~iDiLVnNAGi  100 (302)
T d1gz6a_          86 DTFGRIDVVVNNAGI  100 (302)
T ss_dssp             HHTSCCCEEEECCCC
T ss_pred             HHcCCCCEEEECCcc
Confidence            123579999999983

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.04  E-value=0.0027  Score=43.69  Aligned_cols=87  Identities=14%  Similarity=0.059  Sum_probs=62.9

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCC-EEEeCCCCccccccCCCCCcccEEEeCCCCC---
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGAD-EVLDYKTPDGAALKSPSGRKYDAVIHCATGI---  143 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~---  143 (240)
                      +|.|+| +|.+|....+.++..|.+|++.+++ ++.+.+++.|.. ...+.    ...+     ...|+||-++...   
T Consensus         2 kI~iIG-~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~----~~~~-----~~~DiIilavp~~~~~   71 (165)
T d2f1ka2           2 KIGVVG-LGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQD----LSLL-----QTAKIIFLCTPIQLIL   71 (165)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESC----GGGG-----TTCSEEEECSCHHHHH
T ss_pred             EEEEEe-ecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeee----cccc-----cccccccccCcHhhhh
Confidence            588999 8999999998899999999999875 778888888853 33221    1111     4589999988632   


Q ss_pred             -CccccccCCCCCcEEEEeCCCc
Q 045248          144 -PWSTFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus       144 -~~~~~~~~l~~~G~iv~~g~~~  165 (240)
                       .++.....++++-.++.++...
T Consensus        72 ~vl~~l~~~l~~~~iv~~~~s~~   94 (165)
T d2f1ka2          72 PTLEKLIPHLSPTAIVTDVASVK   94 (165)
T ss_dssp             HHHHHHGGGSCTTCEEEECCSCC
T ss_pred             hhhhhhhhhcccccceeeccccc
Confidence             2556666777777777776543

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.03  E-value=0.0013  Score=42.28  Aligned_cols=92  Identities=10%  Similarity=0.090  Sum_probs=62.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc--ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA--RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~--~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      .|++|||+| +|.+|..-++.+...|++|++++..  +......+.+....+. +......+     .++++|+-+.+.+
T Consensus        11 ~~k~vlVvG-~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~-~~~~~~dl-----~~~~lv~~at~d~   83 (113)
T d1pjqa1          11 RDRDCLIVG-GGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVE-GPFDETLL-----DSCWLAIAATDDD   83 (113)
T ss_dssp             BTCEEEEEC-CSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEE-SSCCGGGG-----TTCSEEEECCSCH
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeec-cCCCHHHh-----CCCcEEeecCCCH
Confidence            789999999 8999999999999999999998864  2333232333333332 11111112     4688999998876


Q ss_pred             Cc-cccccCCCCCcEEEEeCCC
Q 045248          144 PW-STFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       144 ~~-~~~~~~l~~~G~iv~~g~~  164 (240)
                      .+ ....+..++.|..|.+...
T Consensus        84 ~~n~~i~~~a~~~~ilVNv~D~  105 (113)
T d1pjqa1          84 TVNQRVSDAAESRRIFCNVVDA  105 (113)
T ss_dssp             HHHHHHHHHHHHTTCEEEETTC
T ss_pred             HHHHHHHHHHHHcCCEEEeCCC
Confidence            54 3566677788888876543

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.00  E-value=0.0012  Score=49.55  Aligned_cols=77  Identities=19%  Similarity=0.122  Sum_probs=51.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc--ccHH----HHHhcCCCEEEe---CCCCc--cccccC--CCCCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA--RNIE----FVKSLGADEVLD---YKTPD--GAALKS--PSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~--~~~~----~~~~~g~~~v~~---~~~~~--~~~~~~--~~~~~  132 (240)
                      +|+++||+||++++|.++++.+...|++|+.+.+.  +..+    .+++.|.+....   ..+++  ...++.  ...++
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   96 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGK   96 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhCC
Confidence            68999999999999999999999999999988743  3332    335666543332   22211  111111  12247


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.+.|.
T Consensus        97 idilV~nag~  106 (272)
T d1g0oa_          97 LDIVCSNSGV  106 (272)
T ss_dssp             CCEEEECCCC
T ss_pred             CCcccccccc
Confidence            8999999984

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=96.97  E-value=0.00044  Score=50.42  Aligned_cols=95  Identities=18%  Similarity=0.214  Sum_probs=59.3

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcC----CCEEEeCCCCccccccCCC
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLG----ADEVLDYKTPDGAALKSPS  129 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g----~~~v~~~~~~~~~~~~~~~  129 (240)
                      +...+     ++|++||-+| +| .|..++.+++. +.+|+++... +..+.+++.-    ...++..   +... -...
T Consensus        64 ~~L~l-----~~g~~VLdIG-~G-sGy~ta~La~l-~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~---d~~~-g~~~  131 (224)
T d1vbfa_          64 DELDL-----HKGQKVLEIG-TG-IGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYYNNIKLILG---DGTL-GYEE  131 (224)
T ss_dssp             HHTTC-----CTTCEEEEEC-CT-TSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTCSSEEEEES---CGGG-CCGG
T ss_pred             HHhhh-----cccceEEEec-CC-CCHHHHHHHHH-hcccccccccHHHHHHHHHHHhcccccccccC---chhh-cchh
Confidence            67777     8999999999 44 56666666665 5699999964 5555554321    1111111   1000 0112


Q ss_pred             CCcccEEEeCCCCCC-ccccccCCCCCcEEEEe
Q 045248          130 GRKYDAVIHCATGIP-WSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       130 ~~~~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~  161 (240)
                      ...||.|+-+.+-+. ....++.|++||++|..
T Consensus       132 ~~pfD~Iiv~~a~~~ip~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         132 EKPYDRVVVWATAPTLLCKPYEQLKEGGIMILP  164 (224)
T ss_dssp             GCCEEEEEESSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             hhhHHHHHhhcchhhhhHHHHHhcCCCCEEEEE
Confidence            356999986655443 55678899999998875

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00069  Score=50.43  Aligned_cols=77  Identities=17%  Similarity=0.138  Sum_probs=50.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-Hhc----CCCEE--E--eCCCCc--cccccC--CCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSL----GADEV--L--DYKTPD--GAALKS--PSGR  131 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~----g~~~v--~--~~~~~~--~~~~~~--~~~~  131 (240)
                      .|+++||+||++|+|.++++.+...|++|+.+.++ ++.+.+ +++    +...+  +  |-.+++  ...++.  ..-.
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            68999999999999999999999999999999975 554433 222    21112  1  222222  111111  1124


Q ss_pred             cccEEEeCCCC
Q 045248          132 KYDAVIHCATG  142 (240)
Q Consensus       132 ~~d~v~d~~g~  142 (240)
                      ++|++++++|.
T Consensus        82 ~iDilVnnAg~   92 (254)
T d2gdza1          82 RLDILVNNAGV   92 (254)
T ss_dssp             CCCEEEECCCC
T ss_pred             CcCeecccccc
Confidence            79999999984

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=96.97  E-value=0.00043  Score=51.39  Aligned_cols=100  Identities=17%  Similarity=0.105  Sum_probs=63.7

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC--CEEEEEeCc-ccHHHHH----hcC-CCEEEeCCCCcccccc
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN--THVTASCGA-RNIEFVK----SLG-ADEVLDYKTPDGAALK  126 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g--~~v~~~~~~-~~~~~~~----~~g-~~~v~~~~~~~~~~~~  126 (240)
                      ..+++     +||++||=.| +| .|.++..+|+..|  .+|++++.+ +..+.++    +++ ...+ .....+.  .+
T Consensus        79 ~~l~i-----~pG~rVLEiG-~G-sG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv-~~~~~Di--~~  148 (250)
T d1yb2a1          79 MRCGL-----RPGMDILEVG-VG-SGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNV-RTSRSDI--AD  148 (250)
T ss_dssp             --CCC-----CTTCEEEEEC-CT-TSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTE-EEECSCT--TT
T ss_pred             HHcCC-----CCcCEEEEee-ee-CcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCce-EEEEeee--ec
Confidence            56777     9999999998 34 3666777887654  499999954 5666664    333 2222 1111111  11


Q ss_pred             CCCCCcccEEEeCCCC--CCccccccCCCCCcEEEEeCCC
Q 045248          127 SPSGRKYDAVIHCATG--IPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       127 ~~~~~~~d~v~d~~g~--~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      ......||.|+--...  ..++.+.+.|+|||+++.+.+.
T Consensus       149 ~~~~~~fD~V~ld~p~p~~~l~~~~~~LKpGG~lv~~~P~  188 (250)
T d1yb2a1         149 FISDQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLPN  188 (250)
T ss_dssp             CCCSCCEEEEEECCSCGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred             ccccceeeeeeecCCchHHHHHHHHHhcCCCceEEEEeCC
Confidence            2234579999755554  3478899999999999887554

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00076  Score=50.29  Aligned_cols=77  Identities=25%  Similarity=0.280  Sum_probs=51.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCC-CEEE----eCCCCc--cccccC--CCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGA-DEVL----DYKTPD--GAALKS--PSGR  131 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~-~~v~----~~~~~~--~~~~~~--~~~~  131 (240)
                      +++++||+||++++|.++++.+...|++|+.+.++ ++.+.+    ++.+. ..++    |-.+++  ...+..  ..-+
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g   88 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS   88 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            68999999999999999999999999999999975 554443    34442 2332    222222  111111  1125


Q ss_pred             cccEEEeCCCC
Q 045248          132 KYDAVIHCATG  142 (240)
Q Consensus       132 ~~d~v~d~~g~  142 (240)
                      ++|+++.++|.
T Consensus        89 ~iD~lVnnAg~   99 (257)
T d1xg5a_          89 GVDICINNAGL   99 (257)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEecccc
Confidence            69999999984

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.90  E-value=0.0011  Score=48.64  Aligned_cols=34  Identities=15%  Similarity=0.170  Sum_probs=30.8

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      +.+|||+||++++|.+.++.+...|++|+.+++.
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~   35 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLS   35 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3578999999999999999999999999999865

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=96.89  E-value=0.0012  Score=49.30  Aligned_cols=77  Identities=16%  Similarity=0.160  Sum_probs=50.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc--ccHHHH-----HhcCCCEEE---eCCCCc--cccccC--CCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA--RNIEFV-----KSLGADEVL---DYKTPD--GAALKS--PSGR  131 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~--~~~~~~-----~~~g~~~v~---~~~~~~--~~~~~~--~~~~  131 (240)
                      +|+++||+||++|+|.+.++.+...|++|+.+.+.  ++.+.+     ++.|.....   |-.+++  ...++.  ..-+
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   82 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMG   82 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            68999999999999999999999999999999864  333333     234543332   222222  111111  1124


Q ss_pred             cccEEEeCCCC
Q 045248          132 KYDAVIHCATG  142 (240)
Q Consensus       132 ~~d~v~d~~g~  142 (240)
                      ++|+++.++|.
T Consensus        83 ~iDiLVnnAG~   93 (260)
T d1x1ta1          83 RIDILVNNAGI   93 (260)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCcEEEeeccc
Confidence            69999999983

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=96.88  E-value=0.00088  Score=50.49  Aligned_cols=76  Identities=17%  Similarity=0.223  Sum_probs=52.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCCEE-E--eCCCCc--cccccC--CCCCcccEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGADEV-L--DYKTPD--GAALKS--PSGRKYDAV  136 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~~v-~--~~~~~~--~~~~~~--~~~~~~d~v  136 (240)
                      +|+++||+||++++|.++++.+...|++|+.+.++ ++++.+ +++|.... +  |..+.+  ...+..  ..-.++|++
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~idil   83 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARFGKIDTL   83 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHHHhCCcccc
Confidence            68999999999999999999999999999999975 555444 45664322 2  222222  111111  112569999


Q ss_pred             EeCCC
Q 045248          137 IHCAT  141 (240)
Q Consensus       137 ~d~~g  141 (240)
                      +.++|
T Consensus        84 vnnAG   88 (276)
T d1bdba_          84 IPNAG   88 (276)
T ss_dssp             ECCCC
T ss_pred             ccccc
Confidence            99998

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.87  E-value=0.0026  Score=47.22  Aligned_cols=75  Identities=23%  Similarity=0.197  Sum_probs=48.8

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCCEE-E--eCCCCc--cccccC--CCCCcccE
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGADEV-L--DYKTPD--GAALKS--PSGRKYDA  135 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~~v-~--~~~~~~--~~~~~~--~~~~~~d~  135 (240)
                      +.+||+||++|+|.+.++.+...|++|+.+.++ ++.+.+    ++.|.... +  |-.+++  ...++.  ..-+++|+
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   81 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDV   81 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence            346999999999999999999999999999975 444333    45564422 2  222222  111111  11257999


Q ss_pred             EEeCCCC
Q 045248          136 VIHCATG  142 (240)
Q Consensus       136 v~d~~g~  142 (240)
                      +++++|.
T Consensus        82 lVnnAG~   88 (255)
T d1gega_          82 IVNNAGV   88 (255)
T ss_dssp             EEECCCC
T ss_pred             EEecccc
Confidence            9999983

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.85  E-value=0.00076  Score=50.73  Aligned_cols=77  Identities=23%  Similarity=0.327  Sum_probs=51.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCC--CEE--E--eCCCCc--cccccC--CCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGA--DEV--L--DYKTPD--GAALKS--PSG  130 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~--~~v--~--~~~~~~--~~~~~~--~~~  130 (240)
                      +|+++||+||++|+|.+.++.+...|++|+.+.++ ++.+.+    ++.+.  ..+  +  |-.+++  ...++.  ...
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~   83 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   83 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            78999999999999999999999999999999975 554443    33432  112  2  222222  111111  112


Q ss_pred             CcccEEEeCCCC
Q 045248          131 RKYDAVIHCATG  142 (240)
Q Consensus       131 ~~~d~v~d~~g~  142 (240)
                      +++|+++.++|.
T Consensus        84 g~iDilvnnAG~   95 (272)
T d1xkqa_          84 GKIDVLVNNAGA   95 (272)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCceEEEeCCcc
Confidence            469999999883

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.84  E-value=0.00079  Score=46.89  Aligned_cols=97  Identities=16%  Similarity=0.107  Sum_probs=58.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCc-cccccCCCCCcccEEEeCCCCCC
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCATGIP  144 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~~  144 (240)
                      +++|+|+| +|.+|..+++.+...|.+|+++.++ ++.+.+.+............. ...... .-...|.++.+.....
T Consensus         2 ~K~IliiG-aG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~i~~~~~~~   79 (182)
T d1e5qa1           2 TKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDA-EVAKHDLVISLIPYTF   79 (182)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHH-HHTTSSEEEECSCGGG
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHh-hhhccceeEeeccchh
Confidence            58999999 7999999999999999999999976 666665443322222222211 111100 0124677777765433


Q ss_pred             -ccccccCCCCCcEEEEeCCCc
Q 045248          145 -WSTFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus       145 -~~~~~~~l~~~G~iv~~g~~~  165 (240)
                       ......+++.+-.++......
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~  101 (182)
T d1e5qa1          80 HATVIKSAIRQKKHVVTTSYVS  101 (182)
T ss_dssp             HHHHHHHHHHHTCEEECSSCCC
T ss_pred             hhHHHHHHHhhccceeecccCc
Confidence             333334455556666665443

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=96.83  E-value=0.001  Score=49.81  Aligned_cols=76  Identities=18%  Similarity=0.225  Sum_probs=51.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCC---CEEE--eCCCCc--cccccC--CCCCccc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGA---DEVL--DYKTPD--GAALKS--PSGRKYD  134 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~---~~v~--~~~~~~--~~~~~~--~~~~~~d  134 (240)
                      +|+++||+||++|+|.+.++.+...|++|+.+.++ ++.+.+ ++++.   ...+  |-.+++  ...++.  ..-.++|
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   84 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLD   84 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCCcc
Confidence            78999999999999999999999999999999975 554444 34432   2222  222222  111111  1124799


Q ss_pred             EEEeCCC
Q 045248          135 AVIHCAT  141 (240)
Q Consensus       135 ~v~d~~g  141 (240)
                      +++.++|
T Consensus        85 ~lVnnAG   91 (268)
T d2bgka1          85 IMFGNVG   91 (268)
T ss_dssp             EEEECCC
T ss_pred             eeccccc
Confidence            9999998

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=96.82  E-value=0.00014  Score=54.29  Aligned_cols=91  Identities=10%  Similarity=0.017  Sum_probs=57.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHH----hcCCC-EEEeCCCCccccccCCCCCcccEEEe
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVK----SLGAD-EVLDYKTPDGAALKSPSGRKYDAVIH  138 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~----~~g~~-~v~~~~~~~~~~~~~~~~~~~d~v~d  138 (240)
                      ++|++||=+| +| .|..++.++ ..|++|++++. +...+.++    ..|.. .++..   +..  .......||+|+-
T Consensus       119 ~~g~~VLDiG-cG-sG~l~i~aa-~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~---d~~--~~~~~~~fD~V~a  190 (254)
T d2nxca1         119 RPGDKVLDLG-TG-SGVLAIAAE-KLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEG---SLE--AALPFGPFDLLVA  190 (254)
T ss_dssp             CTTCEEEEET-CT-TSHHHHHHH-HTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEES---CHH--HHGGGCCEEEEEE
T ss_pred             CccCEEEEcc-cc-hhHHHHHHH-hcCCEEEEEECChHHHHHHHHHHHHcCCceeEEec---ccc--ccccccccchhhh
Confidence            6899999998 55 366666554 47899999995 45555554    45543 22221   111  1122357999987


Q ss_pred             CCCCCC----ccccccCCCCCcEEEEeCC
Q 045248          139 CATGIP----WSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       139 ~~g~~~----~~~~~~~l~~~G~iv~~g~  163 (240)
                      ......    +....+.|+|||+++..|.
T Consensus       191 ni~~~~l~~l~~~~~~~LkpGG~lilSgi  219 (254)
T d2nxca1         191 NLYAELHAALAPRYREALVPGGRALLTGI  219 (254)
T ss_dssp             ECCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccHHHHHHHHHHhcCCCcEEEEEec
Confidence            654322    4567778999999987653

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.81  E-value=0.00084  Score=50.53  Aligned_cols=76  Identities=18%  Similarity=0.283  Sum_probs=51.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCC--CE--EE--eCCCCc--cccccC--CCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGA--DE--VL--DYKTPD--GAALKS--PSG  130 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~--~~--v~--~~~~~~--~~~~~~--~~~  130 (240)
                      .|++++|+||++|+|.+.++.+...|++|+.+.++ ++.+.+    ++.|.  ..  .+  |-.+++  ...++.  ..-
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   82 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF   82 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            68999999999999999999999999999999975 554433    34442  11  22  222222  111111  112


Q ss_pred             CcccEEEeCCC
Q 045248          131 RKYDAVIHCAT  141 (240)
Q Consensus       131 ~~~d~v~d~~g  141 (240)
                      +++|+++.++|
T Consensus        83 G~iDilVnnAG   93 (274)
T d1xhla_          83 GKIDILVNNAG   93 (274)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCceEEEeecc
Confidence            47999999987

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.0012  Score=48.21  Aligned_cols=95  Identities=12%  Similarity=-0.022  Sum_probs=58.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHhc-CCCE------------EEeCCCCc-------cc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSL-GADE------------VLDYKTPD-------GA  123 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~-g~~~------------v~~~~~~~-------~~  123 (240)
                      +++.+||..| +| .|..+..+|+ .|++|++++- +...+.+++. +...            ........       ..
T Consensus        44 ~~~~rvLd~G-CG-~G~~a~~LA~-~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  120 (229)
T d2bzga1          44 KSGLRVFFPL-CG-KAVEMKWFAD-RGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF  120 (229)
T ss_dssp             CCSCEEEETT-CT-TCTHHHHHHH-TTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred             CCCCEEEEeC-CC-CcHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence            7889999998 55 4777777765 6999999994 4666666532 2211            11111111       01


Q ss_pred             cccCCCCCcccEEEeCCCCC---------CccccccCCCCCcEEEEeC
Q 045248          124 ALKSPSGRKYDAVIHCATGI---------PWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       124 ~~~~~~~~~~d~v~d~~g~~---------~~~~~~~~l~~~G~iv~~g  162 (240)
                      .........+|+|+++..-.         .+..+.++|+|+|+++...
T Consensus       121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~  168 (229)
T d2bzga1         121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCV  168 (229)
T ss_dssp             GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEE
Confidence            11122345689999977421         2456788999999876554

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.77  E-value=0.00028  Score=49.68  Aligned_cols=45  Identities=16%  Similarity=0.038  Sum_probs=31.6

Q ss_pred             CCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCC
Q 045248           11 HNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGV   59 (240)
Q Consensus        11 ~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~   59 (240)
                      +.+|+|+||+++++++++++|++......+   ..+.++++++ .++.+
T Consensus       122 ~~~GgfaEy~~v~~~~~~~ip~~~~~~~~a---~~l~~a~~a~-~~a~v  166 (179)
T d1uufa1         122 HTLGGYSQQIVVHERYVLRIRVADIEMIRA---DQINEAYERM-LRGDV  166 (179)
T ss_dssp             BCCCSSBSEEEEEGGGCEECCCCCEEEECG---GGHHHHHHHH-HTTCS
T ss_pred             ccccccceEEEechHHEEECCCCCcChhHh---chhHHHHHHH-HHhCc
Confidence            346999999999999999999664332222   2334788888 55655

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=96.76  E-value=0.001  Score=49.44  Aligned_cols=77  Identities=16%  Similarity=0.110  Sum_probs=51.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCC--C-EEE--eCCCCc--cccccC--CCCCccc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGA--D-EVL--DYKTPD--GAALKS--PSGRKYD  134 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~--~-~v~--~~~~~~--~~~~~~--~~~~~~d  134 (240)
                      +|+++||+||++|+|.+.++.+...|++|+.+.++ ++.+.+ ++++.  . ..+  |-.+++  ...++.  ..-+++|
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD   84 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVS   84 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhCCce
Confidence            68999999999999999999999999999999975 555444 33332  1 222  222222  111111  1124799


Q ss_pred             EEEeCCCC
Q 045248          135 AVIHCATG  142 (240)
Q Consensus       135 ~v~d~~g~  142 (240)
                      ++++++|.
T Consensus        85 iLVnnAg~   92 (251)
T d1zk4a1          85 TLVNNAGI   92 (251)
T ss_dssp             EEEECCCC
T ss_pred             EEEecccc
Confidence            99999983

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=96.74  E-value=0.001  Score=49.52  Aligned_cols=76  Identities=20%  Similarity=0.115  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHH----hcCCCEEE--eCCCC-ccc----cc---cCCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVK----SLGADEVL--DYKTP-DGA----AL---KSPSG  130 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~----~~g~~~v~--~~~~~-~~~----~~---~~~~~  130 (240)
                      .|+++||+||++|+|.+++..+...|++|+.+.+ .++.+.++    ..+...+.  ..+.. +..    .+   ... -
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~   82 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ-L   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH-H
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHH-c
Confidence            7899999999999999999999999998888875 34443332    23322222  11111 111    11   111 2


Q ss_pred             CcccEEEeCCCC
Q 045248          131 RKYDAVIHCATG  142 (240)
Q Consensus       131 ~~~d~v~d~~g~  142 (240)
                      +++|+++.++|.
T Consensus        83 g~iDilvnnAG~   94 (254)
T d1sbya1          83 KTVDILINGAGI   94 (254)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEeCCCC
Confidence            479999999994

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.0013  Score=50.11  Aligned_cols=39  Identities=18%  Similarity=0.221  Sum_probs=34.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHH
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIE  104 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~  104 (240)
                      +|+++||+||++++|.++++.+...|++|+.+.++ ++.+
T Consensus        11 ~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~   50 (297)
T d1yxma1          11 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLK   50 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            78999999999999999999999999999999975 5543

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.74  E-value=0.0013  Score=48.91  Aligned_cols=76  Identities=16%  Similarity=0.173  Sum_probs=50.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcC-CCEEE----eCCCCc--cccccC--CCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLG-ADEVL----DYKTPD--GAALKS--PSGR  131 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g-~~~v~----~~~~~~--~~~~~~--~~~~  131 (240)
                      .|++++|+||++|+|.++++.+...|++|+.+.++ ++.+.+    .+.+ -..++    |-.+++  ...++.  ..-+
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   82 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   82 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhC
Confidence            68899999999999999999999999999999965 554433    2222 11222    323322  111111  1124


Q ss_pred             cccEEEeCCC
Q 045248          132 KYDAVIHCAT  141 (240)
Q Consensus       132 ~~d~v~d~~g  141 (240)
                      ++|++++++|
T Consensus        83 ~iDiLVnnAG   92 (258)
T d1iy8a_          83 RIDGFFNNAG   92 (258)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCc
Confidence            6999999998

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.73  E-value=0.00085  Score=45.45  Aligned_cols=53  Identities=9%  Similarity=0.053  Sum_probs=37.6

Q ss_pred             CcccceEEEecCCceeeCCCCCC-----hhhhhhhchHHHH-HHHHHHhhhCCCcCCCCCCCeEEE
Q 045248           13 GGGLAEFAVAKESSTVARPSEVS-----AAEGSGLPVAGLT-AHQALTQSAGVKLDGSGQQKNILV   72 (240)
Q Consensus        13 ~G~~~e~~~v~~~~~~~ip~~~~-----~~~aa~~~~~~~t-a~~~l~~~~~~~~~~~~~g~~vlV   72 (240)
                      .++|+||.++++..+.++|++++     ....+++....+| ||..+...  -     +.|++|++
T Consensus        88 ~~gw~ey~v~~~~~l~kv~~~~~~~~~~~~~~~~lG~~Gmtaay~gl~~~--~-----k~Getvv~  146 (147)
T d1v3va1          88 QSGWTTHFISDGKGLEKLLTEWPDKKIQYHEHVTKGFENMPAAFIEMLNG--A-----NLGKAVVT  146 (147)
T ss_dssp             CCCSBSEEEECSSSCEECCTTCCTTSSCCCEEEEECGGGHHHHHHHHHTT--C-----CSSEEEEE
T ss_pred             ccCCEeEEEeccceeeEccccccccccchhhhHhccccchHHHHHHhhCC--C-----CCCCEEEe
Confidence            47899999999999999987644     3345556666666 45455333  2     67999886

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.0013  Score=49.42  Aligned_cols=96  Identities=18%  Similarity=0.226  Sum_probs=59.9

Q ss_pred             CCeE-EEEcCCchHHHHHHH-HHHhCCCEEEEEeCc-ccHHHH----HhcCCC-EEE--eCCCCc-c----ccccCCCCC
Q 045248           67 QKNI-LVTAASGGVGHYAVQ-LAKLGNTHVTASCGA-RNIEFV----KSLGAD-EVL--DYKTPD-G----AALKSPSGR  131 (240)
Q Consensus        67 g~~v-lV~G~~g~vG~~~~~-~a~~~g~~v~~~~~~-~~~~~~----~~~g~~-~v~--~~~~~~-~----~~~~~~~~~  131 (240)
                      |++| ||+||++|+|+++++ +++..|++|+.++++ ++.+.+    ++.|.. ..+  |-.+.+ .    ..+.+ ..+
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~-~~g   80 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRK-EYG   80 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHH-HHS
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHH-hcC
Confidence            5667 899999999999775 566678999999975 554433    344432 332  222221 1    11111 124


Q ss_pred             cccEEEeCCCCCC--------------------------ccccccCCCCCcEEEEeCC
Q 045248          132 KYDAVIHCATGIP--------------------------WSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       132 ~~d~v~d~~g~~~--------------------------~~~~~~~l~~~G~iv~~g~  163 (240)
                      ++|++++.+|-..                          .+.++..++++|+++.++.
T Consensus        81 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS  138 (275)
T d1wmaa1          81 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  138 (275)
T ss_dssp             SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence            7999999998310                          1123446678899998875

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.014  Score=40.74  Aligned_cols=95  Identities=9%  Similarity=0.005  Sum_probs=57.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHHHH----HhcC----C-CEEEeCCCCccccccCCCCCccc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNIEFV----KSLG----A-DEVLDYKTPDGAALKSPSGRKYD  134 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~~~----~~~g----~-~~v~~~~~~~~~~~~~~~~~~~d  134 (240)
                      .+++|+|.| +||.+.+++..+...|+ +++...+. ++.+.+    ++++    . ..+.+..+.. ...+.  -..+|
T Consensus        17 ~~k~vlIlG-aGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~d   92 (182)
T d1vi2a1          17 KGKTMVLLG-AGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQ-AFAEA--LASAD   92 (182)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHH-HHHHH--HHTCS
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeeccccc-chhhh--hcccc
Confidence            779999999 89999999988888998 67777764 444332    2322    1 1222222211 01111  13589


Q ss_pred             EEEeCCCC--C-----CccccccCCCCCcEEEEeCCC
Q 045248          135 AVIHCATG--I-----PWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       135 ~v~d~~g~--~-----~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      ++++|+.-  .     .+..-...++++..++.+-..
T Consensus        93 iiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y~  129 (182)
T d1vi2a1          93 ILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYN  129 (182)
T ss_dssp             EEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECCCS
T ss_pred             eeccccCCccccccchhhhhHHHhhhcchhhHHhhcC
Confidence            99999852  1     122224567888888877643

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.71  E-value=0.0013  Score=48.65  Aligned_cols=75  Identities=16%  Similarity=0.259  Sum_probs=46.7

Q ss_pred             CeEEEEcCCchHHHHHHHHH-H--hCCCEEEEEeCc-ccHHHHH---hcCCC-EEE--eCCCCc--ccccc----CCCCC
Q 045248           68 KNILVTAASGGVGHYAVQLA-K--LGNTHVTASCGA-RNIEFVK---SLGAD-EVL--DYKTPD--GAALK----SPSGR  131 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a-~--~~g~~v~~~~~~-~~~~~~~---~~g~~-~v~--~~~~~~--~~~~~----~~~~~  131 (240)
                      ++|||+||++|+|.++++.+ +  ..|++|+.++++ ++.+.++   +.+.. .++  |..+++  ....+    .....
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~   82 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKDQ   82 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHGGG
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhhcC
Confidence            58999999999999987654 3  568899999975 5544443   22322 233  223322  11111    12345


Q ss_pred             cccEEEeCCCC
Q 045248          132 KYDAVIHCATG  142 (240)
Q Consensus       132 ~~d~v~d~~g~  142 (240)
                      ++|+++.+.|.
T Consensus        83 ~iDiLvnNAg~   93 (248)
T d1snya_          83 GLNVLFNNAGI   93 (248)
T ss_dssp             CCSEEEECCCC
T ss_pred             CcceEEeeccc
Confidence            79999999873

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.0018  Score=49.79  Aligned_cols=103  Identities=19%  Similarity=0.214  Sum_probs=62.3

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC--EEEEEeC-cccHHHHHh----cC-----------CCEEEe
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT--HVTASCG-ARNIEFVKS----LG-----------ADEVLD  116 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~~-~~~~~~~~~----~g-----------~~~v~~  116 (240)
                      ..+++     +||++||=.| +| .|.+++.+|+..|.  +|++++. ++..+.+++    ++           .+.+ +
T Consensus        92 ~~l~i-----~pG~rVLE~G-tG-sG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv-~  163 (324)
T d2b25a1          92 SMMDI-----NPGDTVLEAG-SG-SGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNV-D  163 (324)
T ss_dssp             HHHTC-----CTTCEEEEEC-CT-TSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCE-E
T ss_pred             HHhCC-----CCCCEEEEec-cc-ccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccce-e
Confidence            66777     8999999888 44 48888889998764  8999995 465555532    21           1111 1


Q ss_pred             CCCCcc-ccccCCCCCcccEEEeCCCC--CCccccccCCCCCcEEEEeCCCc
Q 045248          117 YKTPDG-AALKSPSGRKYDAVIHCATG--IPWSTFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus       117 ~~~~~~-~~~~~~~~~~~d~v~d~~g~--~~~~~~~~~l~~~G~iv~~g~~~  165 (240)
                      ....+. ..........||.||=-+..  ..+..+.+.|+|||+++.+.+.-
T Consensus       164 ~~~~di~~~~~~~~~~~fD~V~LD~p~P~~~l~~~~~~LKpGG~lv~~~P~i  215 (324)
T d2b25a1         164 FIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVNI  215 (324)
T ss_dssp             EEESCTTCCC-------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred             EEecchhhcccccCCCCcceEeecCcCHHHHHHHHHHhccCCCEEEEEeCCH
Confidence            000110 01111223458887644443  34788999999999999876543

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.67  E-value=0.0012  Score=49.31  Aligned_cols=77  Identities=22%  Similarity=0.267  Sum_probs=50.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCC--CEE--E--eCCCCc--cccccC--CCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGA--DEV--L--DYKTPD--GAALKS--PSG  130 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~--~~v--~--~~~~~~--~~~~~~--~~~  130 (240)
                      +|+.+||+||++|+|.+.++.+...|++|+.+.++ ++.+.+    ++.|.  ..+  +  |..+++  ...++.  ..-
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF   83 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            78999999999999999999999999999999975 554443    33432  112  2  222222  111111  112


Q ss_pred             CcccEEEeCCCC
Q 045248          131 RKYDAVIHCATG  142 (240)
Q Consensus       131 ~~~d~v~d~~g~  142 (240)
                      .++|++++++|.
T Consensus        84 g~iDilvnnAG~   95 (264)
T d1spxa_          84 GKLDILVNNAGA   95 (264)
T ss_dssp             SCCCEEEECCC-
T ss_pred             CCCCEeeccccc
Confidence            579999999873

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=96.64  E-value=0.0049  Score=45.54  Aligned_cols=77  Identities=21%  Similarity=0.191  Sum_probs=50.8

Q ss_pred             CCCeEEEEcCCc--hHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCCEEEeCCCCccc----c--ccCCCCCc
Q 045248           66 QQKNILVTAASG--GVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGADEVLDYKTPDGA----A--LKSPSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g--~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~~v~~~~~~~~~----~--~~~~~~~~  132 (240)
                      .|+++||+||+|  |+|.+++..+...|++|+.+.++ +..+.+    ...+....+.....+..    .  ........
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPK   83 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCSS
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhcccc
Confidence            789999999888  78999999999999999988865 333332    34454444433322211    1  11223356


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|..+++++.
T Consensus        84 ~d~~v~~a~~   93 (258)
T d1qsga_          84 FDGFVHSIGF   93 (258)
T ss_dssp             EEEEEECCCC
T ss_pred             cceEEEeecc
Confidence            8999988864

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.0046  Score=43.17  Aligned_cols=35  Identities=26%  Similarity=0.140  Sum_probs=32.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ..+++|+|+| +|+.|+.+...+..+|.+|+.....
T Consensus        41 ~~~k~V~IIG-aGPAGL~AA~~la~~G~~Vtl~E~~   75 (179)
T d1ps9a3          41 VQKKNLAVVG-AGPAGLAFAINAAARGHQVTLFDAH   75 (179)
T ss_dssp             SSCCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCCcEEEEEC-ccHHHHHHHHHHHhhccceEEEecc
Confidence            5678999999 8999999999999999999999853

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=96.63  E-value=0.00076  Score=49.49  Aligned_cols=90  Identities=19%  Similarity=0.279  Sum_probs=62.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCC--
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCAT--  141 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g--  141 (240)
                      +++.+||=+| +| .|..+..+++ .|++|++++.+ ...+.+++.+....+.....+   +. ...+.||+|+-...  
T Consensus        41 ~~~~~vLDiG-cG-~G~~~~~l~~-~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~---l~-~~~~~fD~ii~~~~~~  113 (246)
T d2avna1          41 KNPCRVLDLG-GG-TGKWSLFLQE-RGFEVVLVDPSKEMLEVAREKGVKNVVEAKAED---LP-FPSGAFEAVLALGDVL  113 (246)
T ss_dssp             CSCCEEEEET-CT-TCHHHHHHHT-TTCEEEEEESCHHHHHHHHHHTCSCEEECCTTS---CC-SCTTCEEEEEECSSHH
T ss_pred             CCCCEEEEEC-CC-Cchhcccccc-cceEEEEeecccccccccccccccccccccccc---cc-cccccccceeeecchh
Confidence            5778898888 44 7888888876 58999999964 778888887766555433222   11 12467999986543  


Q ss_pred             ----C--CCccccccCCCCCcEEEEe
Q 045248          142 ----G--IPWSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       142 ----~--~~~~~~~~~l~~~G~iv~~  161 (240)
                          .  ..+..+.+.|+|||.++..
T Consensus       114 ~~~~d~~~~l~~i~r~Lk~gG~~ii~  139 (246)
T d2avna1         114 SYVENKDKAFSEIRRVLVPDGLLIAT  139 (246)
T ss_dssp             HHCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhhhHHHHHHHHHhhcCcCcEEEEE
Confidence                1  1266777899999988754

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=96.61  E-value=0.0021  Score=49.70  Aligned_cols=42  Identities=19%  Similarity=0.153  Sum_probs=35.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV  106 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~  106 (240)
                      ++|++|||+||+|-+|..+++.+...|++|+++.++ .+.+.+
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~   51 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANL   51 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHH
Confidence            789999999999999999998888889999999875 444433

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=96.61  E-value=0.0052  Score=45.48  Aligned_cols=78  Identities=22%  Similarity=0.279  Sum_probs=49.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc----ccH----HHHHhcCCCEEE---eCCCCc--ccccc-CCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA----RNI----EFVKSLGADEVL---DYKTPD--GAALK-SPS  129 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~----~~~----~~~~~~g~~~v~---~~~~~~--~~~~~-~~~  129 (240)
                      +|+.++||+||+|++|.++++.+...|+ +|+.+.++    +..    +.+++.|....+   |-.+.+  ..... ...
T Consensus         7 ~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~   86 (259)
T d2fr1a1           7 KPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGD   86 (259)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred             CCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhccccc
Confidence            7888999999999999999998888999 56666542    222    233456653222   222222  11111 122


Q ss_pred             CCcccEEEeCCCC
Q 045248          130 GRKYDAVIHCATG  142 (240)
Q Consensus       130 ~~~~d~v~d~~g~  142 (240)
                      ..++|.++.+.|.
T Consensus        87 ~~~i~~vv~~ag~   99 (259)
T d2fr1a1          87 DVPLSAVFHAAAT   99 (259)
T ss_dssp             TSCEEEEEECCCC
T ss_pred             ccccccccccccc
Confidence            3468999999983

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=96.60  E-value=0.01  Score=43.44  Aligned_cols=33  Identities=18%  Similarity=0.294  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      .|.+|+|.| .|.+|..+++++...|++|++++.
T Consensus        30 ~g~~v~IqG-fGnVG~~~a~~L~~~Gakvv~vsD   62 (242)
T d1v9la1          30 EGKTVAIQG-MGNVGRWTAYWLEKMGAKVIAVSD   62 (242)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEeec
Confidence            899999999 999999999999999999998773

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.57  E-value=0.0038  Score=41.38  Aligned_cols=73  Identities=16%  Similarity=0.097  Sum_probs=46.3

Q ss_pred             eEEEEcCCchHHHHHHHHHH-hCCCEEEEEeC-cccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCCcc
Q 045248           69 NILVTAASGGVGHYAVQLAK-LGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWS  146 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~-~~g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  146 (240)
                      +|.|.|++|-+|..+++... ..++++++... .+.......                      .++|++||++..+...
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~~~~~~----------------------~~~DvvIDFS~p~~~~   58 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLLTD----------------------GNTEVVIDFTHPDVVM   58 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCTHHHHT----------------------TTCSEEEECCCTTTHH
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCchhhhcc----------------------ccCCEEEEcccHHHHH
Confidence            58899999999999888766 45567776553 222222211                      3467788877776655


Q ss_pred             ccccCCCCCcEEEEeCC
Q 045248          147 TFEPNLGTNGKVIDITP  163 (240)
Q Consensus       147 ~~~~~l~~~G~iv~~g~  163 (240)
                      ..++.+...|.=+.+|.
T Consensus        59 ~~~~~~~~~~~~~ViGT   75 (135)
T d1yl7a1          59 GNLEFLIDNGIHAVVGT   75 (135)
T ss_dssp             HHHHHHHHTTCEEEECC
T ss_pred             HHHHHHHhcCCCEEEec
Confidence            55555555555445553

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.49  E-value=0.0021  Score=47.21  Aligned_cols=73  Identities=15%  Similarity=0.144  Sum_probs=48.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCc--cccccC--CCCCcccEEEeCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPD--GAALKS--PSGRKYDAVIHCA  140 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~--~~~~~~--~~~~~~d~v~d~~  140 (240)
                      .|+++||+||++++|.++++.+...|++|+.+.++ ++.+.+..    ...|..+++  ...++.  ....++|+++.++
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~----~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnA   81 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFG----VEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNA   81 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEE----EECCTTCHHHHHHHHHHHHHHHSSCSEEEEEC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCceE----EEEecCCHHHHHHHHHHHHHhcCCceEEEeee
Confidence            78999999999999999999999999999999975 33321110    112333322  111111  1124699999998


Q ss_pred             CC
Q 045248          141 TG  142 (240)
Q Consensus       141 g~  142 (240)
                      |.
T Consensus        82 G~   83 (237)
T d1uzma1          82 GL   83 (237)
T ss_dssp             SC
T ss_pred             cc
Confidence            83

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.49  E-value=0.0024  Score=42.22  Aligned_cols=74  Identities=19%  Similarity=0.126  Sum_probs=51.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      ++++|+| .|.+|..+++.+...|.+|++++.+ ++.+.+++.|...++ .+..+...++..+-...|.++=+++..
T Consensus         1 k~~iIiG-~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~-gd~~~~~~l~~a~i~~a~~vi~~~~~~   75 (134)
T d2hmva1           1 KQFAVIG-LGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVI-ANATEENELLSLGIRNFEYVIVAIGAN   75 (134)
T ss_dssp             CCEEEEC-CSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEE-CCTTCTTHHHHHTGGGCSEEEECCCSC
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCccee-eecccchhhhccCCccccEEEEEcCch
Confidence            3578899 8999999999999999999999965 788888887764433 222222222222334577777777643

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.48  E-value=0.0011  Score=48.22  Aligned_cols=72  Identities=22%  Similarity=0.255  Sum_probs=43.8

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCC--EEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccc-cCCCCCcccEEEeCCCCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNT--HVTASCGA-RNIEFVKSLGADEVLDYKTPDGAAL-KSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~-~~~~~~~~d~v~d~~g~~  143 (240)
                      .+|||+||+|.+|..+++.+...|.  .|+...++ ++.+.. ..+.. ++..+..+.... +..  .++|.|+.+++..
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~-~~~~~-~~~~d~~~~~~~~~~~--~~~d~vi~~a~~~   79 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-GGEAD-VFIGDITDADSINPAF--QGIDALVILTSAV   79 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-TCCTT-EEECCTTSHHHHHHHH--TTCSEEEECCCCC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhc-cCCcE-EEEeeecccccccccc--ccceeeEEEEeec
Confidence            6899999999999999999988886  45555554 333322 12223 232222221111 111  3689999998753

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.47  E-value=0.0082  Score=41.49  Aligned_cols=68  Identities=12%  Similarity=0.193  Sum_probs=45.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcC---CCEEEeCCCCccccccCCCCCcccEEEeC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLG---ADEVLDYKTPDGAALKSPSGRKYDAVIHC  139 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g---~~~v~~~~~~~~~~~~~~~~~~~d~v~d~  139 (240)
                      .++++|+|.| +||.+.+++..+...+.+++.+.|+ ++.+.+ +.++   ....+...        ...-..+|++++|
T Consensus        16 ~~~k~vlIlG-aGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~--------~~~~~~~diiIN~   86 (171)
T d1p77a1          16 RPNQHVLILG-AGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMD--------SIPLQTYDLVINA   86 (171)
T ss_dssp             CTTCEEEEEC-CSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGG--------GCCCSCCSEEEEC
T ss_pred             CCCCEEEEEC-CcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhc--------cccccccceeeec
Confidence            4889999999 8999999888877766688888876 554444 3443   11122111        1123569999999


Q ss_pred             CC
Q 045248          140 AT  141 (240)
Q Consensus       140 ~g  141 (240)
                      +.
T Consensus        87 tp   88 (171)
T d1p77a1          87 TS   88 (171)
T ss_dssp             CC
T ss_pred             cc
Confidence            87

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.42  E-value=0.01  Score=40.71  Aligned_cols=91  Identities=14%  Similarity=0.026  Sum_probs=64.1

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCC--EEEEEeCc-ccHHHHHhcCCC-EEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNT--HVTASCGA-RNIEFVKSLGAD-EVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~~~-~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      ++|+|+| +|.+|...+.-++..|.  +|++.+++ +..+.+++.|.. ......+ ..      .....|+|+-|+...
T Consensus         2 k~I~IIG-~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~-~~------~~~~~dlIila~p~~   73 (171)
T d2g5ca2           2 QNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIA-KV------EDFSPDFVMLSSPVR   73 (171)
T ss_dssp             CEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGG-GG------GGTCCSEEEECSCHH
T ss_pred             CEEEEEc-cCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhh-hh------hccccccccccCCch
Confidence            3699999 99999999988888885  88999875 788899988853 3332111 10      113579999999743


Q ss_pred             C----ccccccCCCCCcEEEEeCCCch
Q 045248          144 P----WSTFEPNLGTNGKVIDITPGPS  166 (240)
Q Consensus       144 ~----~~~~~~~l~~~G~iv~~g~~~~  166 (240)
                      .    +....+.++++..+..++....
T Consensus        74 ~~~~vl~~l~~~~~~~~ii~d~~s~k~  100 (171)
T d2g5ca2          74 TFREIAKKLSYILSEDATVTDQGSVKG  100 (171)
T ss_dssp             HHHHHHHHHHHHSCTTCEEEECCSCCT
T ss_pred             hhhhhhhhhhccccccccccccccccH
Confidence            2    4455567788888887776433

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=96.41  E-value=0.001  Score=46.93  Aligned_cols=94  Identities=13%  Similarity=-0.024  Sum_probs=56.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHhcC-CC-EE--------EeCCCCcc--ccccCC---
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLG-AD-EV--------LDYKTPDG--AALKSP---  128 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g-~~-~v--------~~~~~~~~--~~~~~~---  128 (240)
                      +++.+||..| + |.|..+..+|+ .|++|++++- +...+.+++.. .. ..        ........  ......   
T Consensus        19 ~~~~rvLd~G-C-G~G~~a~~la~-~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~   95 (201)
T d1pjza_          19 VPGARVLVPL-C-GKSQDMSWLSG-QGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR   95 (201)
T ss_dssp             CTTCEEEETT-T-CCSHHHHHHHH-HCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred             CCCCEEEEec-C-cCCHHHHHHHH-cCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence            8999999998 3 45677777776 5999999994 46677775432 11 11        11111000  011111   


Q ss_pred             CCCcccEEEeCCCCC---------CccccccCCCCCcEEEEe
Q 045248          129 SGRKYDAVIHCATGI---------PWSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       129 ~~~~~d~v~d~~g~~---------~~~~~~~~l~~~G~iv~~  161 (240)
                      ....+|.|++...-.         .+..+.+.|+++|+++..
T Consensus        96 ~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~  137 (201)
T d1pjza_          96 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI  137 (201)
T ss_dssp             HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred             cccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEE
Confidence            124589998855411         245677889999987654

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.40  E-value=0.0061  Score=43.33  Aligned_cols=46  Identities=20%  Similarity=0.263  Sum_probs=40.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGAD  112 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~  112 (240)
                      .|.+|.|.| .|.+|..+.+++...|++|++.+.+ ++.+....+|..
T Consensus        26 ~gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~   72 (201)
T d1c1da1          26 DGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHT   72 (201)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhccc
Confidence            789999999 9999999999999999999988865 677777778764

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.0016  Score=47.37  Aligned_cols=93  Identities=16%  Similarity=0.112  Sum_probs=57.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCC--CEEEEEeCc-ccHHHH----HhcCC-----CEEEeCCCCccccccCCCCCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGN--THVTASCGA-RNIEFV----KSLGA-----DEVLDYKTPDGAALKSPSGRK  132 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g--~~v~~~~~~-~~~~~~----~~~g~-----~~v~~~~~~~~~~~~~~~~~~  132 (240)
                      ++|++||-+|  .|.|..+..+++..|  .+|++++.. +-.+.+    ++.+.     ..+-. ...+.. ........
T Consensus        75 ~~g~~VLdiG--~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~-~~gD~~-~~~~~~~~  150 (224)
T d1i1na_          75 HEGAKALDVG--SGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQL-VVGDGR-MGYAEEAP  150 (224)
T ss_dssp             CTTCEEEEET--CTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEE-EESCGG-GCCGGGCC
T ss_pred             CCCCeEEEec--CCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEE-EEeecc-cccchhhh
Confidence            8999999999  345777777777655  399999964 433333    33322     11110 001100 01112356


Q ss_pred             ccEEEeCCCCCC-ccccccCCCCCcEEEEe
Q 045248          133 YDAVIHCATGIP-WSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       133 ~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~  161 (240)
                      ||.|+-+.+-+. ....++.|++||++|..
T Consensus       151 fD~I~~~~~~~~ip~~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         151 YDAIHVGAAAPVVPQALIDQLKPGGRLILP  180 (224)
T ss_dssp             EEEEEECSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             hhhhhhhcchhhcCHHHHhhcCCCcEEEEE
Confidence            999997776544 56788999999999874

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=96.37  E-value=0.0026  Score=48.68  Aligned_cols=74  Identities=18%  Similarity=0.194  Sum_probs=47.6

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeC---cc---cHHHHHhcCCCEEEeCCCCccccc-cCCCCCcccEEEeCCC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCG---AR---NIEFVKSLGADEVLDYKTPDGAAL-KSPSGRKYDAVIHCAT  141 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~---~~---~~~~~~~~g~~~v~~~~~~~~~~~-~~~~~~~~d~v~d~~g  141 (240)
                      +|||+||+|-+|..+++.+...|++|+++++   ..   +.+.+.+.+.-..+..+-.+...+ +...+.++|+|+.+++
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~aa   81 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAG   81 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEeecc
Confidence            7999999999999999999888999999863   22   233444444334443222221111 1223346899999987


Q ss_pred             C
Q 045248          142 G  142 (240)
Q Consensus       142 ~  142 (240)
                      .
T Consensus        82 ~   82 (338)
T d1orra_          82 Q   82 (338)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=96.34  E-value=0.015  Score=39.44  Aligned_cols=91  Identities=16%  Similarity=0.038  Sum_probs=66.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      -.|++++|.| =|-+|.-.++-++.+|++|+++..+ -+.-++.--|. .+..-.    ..+     ...|+++-++|+.
T Consensus        21 laGk~vvV~G-YG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf-~v~~~~----~a~-----~~aDi~vTaTGn~   89 (163)
T d1v8ba1          21 ISGKIVVICG-YGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGF-NVVTLD----EIV-----DKGDFFITCTGNV   89 (163)
T ss_dssp             CTTSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTC-EECCHH----HHT-----TTCSEEEECCSSS
T ss_pred             ecCCEEEEec-ccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCC-ccCchh----Hcc-----ccCcEEEEcCCCC
Confidence            4899999999 9999999999999999999999964 34333333332 221110    111     3479999999985


Q ss_pred             C--ccccccCCCCCcEEEEeCCCch
Q 045248          144 P--WSTFEPNLGTNGKVIDITPGPS  166 (240)
Q Consensus       144 ~--~~~~~~~l~~~G~iv~~g~~~~  166 (240)
                      .  -..-++.+|.+..+..+|.-..
T Consensus        90 ~vI~~~h~~~MKdgaIl~N~GHfd~  114 (163)
T d1v8ba1          90 DVIKLEHLLKMKNNAVVGNIGHFDD  114 (163)
T ss_dssp             SSBCHHHHTTCCTTCEEEECSSTTT
T ss_pred             ccccHHHHHHhhCCeEEEeccccch
Confidence            4  4466889999999999996543

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.34  E-value=0.00067  Score=47.59  Aligned_cols=36  Identities=11%  Similarity=0.131  Sum_probs=29.2

Q ss_pred             ccCCCcccceEEEecC--CceeeCCCCCChhhhhhhch
Q 045248            9 VSHNGGGLAEFAVAKE--SSTVARPSEVSAAEGSGLPV   44 (240)
Q Consensus         9 ~~~~~G~~~e~~~v~~--~~~~~ip~~~~~~~aa~~~~   44 (240)
                      +...+|+|+||++++.  .+++++|+++++++++....
T Consensus       113 g~~~~G~~aEy~~vp~a~~~l~~iP~~~~~~~~~~~~~  150 (177)
T d1jqba1         113 SNFKDGVFGEYFHVNDADMNLAILPKDVDLSKLVTHVY  150 (177)
T ss_dssp             TTTBCCSSBSSEEESSHHHHCEECCTTSCGGGGEEEEE
T ss_pred             cCCCChhcCeeEEEEhhhCeEEECCCCcchHHHHHHHH
Confidence            4456899999999986  47899999999988765543

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.32  E-value=0.0038  Score=46.46  Aligned_cols=102  Identities=13%  Similarity=0.072  Sum_probs=65.9

Q ss_pred             HhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC--EEEEEeC-cccHHHHHh----cC---CCEEEeCCCCccc
Q 045248           54 TQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT--HVTASCG-ARNIEFVKS----LG---ADEVLDYKTPDGA  123 (240)
Q Consensus        54 ~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~~-~~~~~~~~~----~g---~~~v~~~~~~~~~  123 (240)
                      ...+++     +||++||=.|  .|.|.++..+|+..|-  +|++++. ++..+.+++    ++   .+.+- ....+..
T Consensus        89 i~~l~i-----~PG~~VLE~G--~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~-~~~~d~~  160 (264)
T d1i9ga_          89 VHEGDI-----FPGARVLEAG--AGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWR-LVVSDLA  160 (264)
T ss_dssp             HHHTTC-----CTTCEEEEEC--CTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEE-EECSCGG
T ss_pred             HHHhCC-----CCCCEEEecC--cCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEE-EEecccc
Confidence            367777     8999999887  4567888888888764  9999995 466666643    21   22221 1111111


Q ss_pred             cccCCCCCcccEEEeCCCC--CCccccccCCCCCcEEEEeCCC
Q 045248          124 ALKSPSGRKYDAVIHCATG--IPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       124 ~~~~~~~~~~d~v~d~~g~--~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      . .......||.|+--+..  ..+..+.+.|+|+|+++.+.+.
T Consensus       161 ~-~~~~~~~fDaV~ldlp~P~~~l~~~~~~LkpGG~lv~~~P~  202 (264)
T d1i9ga_         161 D-SELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVAT  202 (264)
T ss_dssp             G-CCCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred             c-ccccCCCcceEEEecCCHHHHHHHHHhccCCCCEEEEEeCc
Confidence            1 11234679987765554  3377888999999999877654

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=96.30  E-value=0.0039  Score=46.53  Aligned_cols=77  Identities=10%  Similarity=0.035  Sum_probs=49.3

Q ss_pred             CCCeEEEEcCCc--hHHHHHHHHHHhCCCEEEEEeCcc-cHHHH---Hh-cCCCEEEeCCCCcc----cccc--CCCCCc
Q 045248           66 QQKNILVTAASG--GVGHYAVQLAKLGNTHVTASCGAR-NIEFV---KS-LGADEVLDYKTPDG----AALK--SPSGRK  132 (240)
Q Consensus        66 ~g~~vlV~G~~g--~vG~~~~~~a~~~g~~v~~~~~~~-~~~~~---~~-~g~~~v~~~~~~~~----~~~~--~~~~~~  132 (240)
                      +|+++||+||+|  |+|.++++.+...|++|+.+.+++ ..+.+   .+ .+...++.....+.    ..+.  ...-.+
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g~   83 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLGS   83 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHcCC
Confidence            689999999876  899999999999999999999753 22222   22 33323332222111    1111  112256


Q ss_pred             ccEEEeCCCC
Q 045248          133 YDAVIHCATG  142 (240)
Q Consensus       133 ~d~v~d~~g~  142 (240)
                      +|+++.+.|.
T Consensus        84 id~lV~nag~   93 (274)
T d2pd4a1          84 LDFIVHSVAF   93 (274)
T ss_dssp             EEEEEECCCC
T ss_pred             CCeEEeeccc
Confidence            9999999984

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.25  E-value=0.0019  Score=47.82  Aligned_cols=72  Identities=8%  Similarity=0.069  Sum_probs=47.6

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcC----CCEEEeCCCCccccccC--CCCCcccEEEeCCC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLG----ADEVLDYKTPDGAALKS--PSGRKYDAVIHCAT  141 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g----~~~v~~~~~~~~~~~~~--~~~~~~d~v~d~~g  141 (240)
                      ++||+||++++|+++++.+...|++|+...++ ++.+.+++.+    ...+.+..+. ...++.  ..-+++|+++.+.|
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~dv~~~~~~-~~~~~~~~~~~G~iDiLVnNAg   80 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEP-AELIEAVTSAYGQVDVLVSNDI   80 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHCTTSEECCCCSH-HHHHHHHHHHHSCCCEEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhhCcEEEeccCCHHHH-HHHHHHHHHHcCCCCEEEECCc
Confidence            68999999999999999999999999998864 6666654332    2333222111 111111  11246999998876

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.24  E-value=0.0071  Score=41.88  Aligned_cols=97  Identities=11%  Similarity=-0.040  Sum_probs=63.0

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCC-EEEEEeC--c-ccHHHHHhcCCCEEEeCCCCc--ccc--ccCC-----CCCcccE
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNT-HVTASCG--A-RNIEFVKSLGADEVLDYKTPD--GAA--LKSP-----SGRKYDA  135 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~--~-~~~~~~~~~g~~~v~~~~~~~--~~~--~~~~-----~~~~~d~  135 (240)
                      +|.|.| .|-+|...++.+....- +++++..  + ....++.+.+.+......+..  ...  +...     .-.++|+
T Consensus         4 rIaING-fGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDv   82 (172)
T d2czca2           4 KVGVNG-YGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (172)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             EEEEEC-CCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccCCE
Confidence            789999 99999999988876654 8887773  3 345666777755333211111  000  0000     0147999


Q ss_pred             EEeCCCCCC-ccccccCCCCCcEEEEeCCCch
Q 045248          136 VIHCATGIP-WSTFEPNLGTNGKVIDITPGPS  166 (240)
Q Consensus       136 v~d~~g~~~-~~~~~~~l~~~G~iv~~g~~~~  166 (240)
                      |+||+|.-. ...+-..++.|-+.|.++.+..
T Consensus        83 ViEcTG~f~~~~~~~~hl~~G~k~Vi~s~~~~  114 (172)
T d2czca2          83 IVDATPGGIGAKNKPLYEKAGVKAIFQGGEKA  114 (172)
T ss_dssp             EEECCSTTHHHHHHHHHHHHTCEEEECTTSCG
T ss_pred             EEECCCCCCCHHHHHHHHHcCCCEEEECCCCc
Confidence            999999643 6666677888888888886543

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=96.21  E-value=0.0012  Score=49.88  Aligned_cols=103  Identities=13%  Similarity=0.031  Sum_probs=62.9

Q ss_pred             HHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHH----hcCCCEEEeCCCCcccccc
Q 045248           52 ALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVK----SLGADEVLDYKTPDGAALK  126 (240)
Q Consensus        52 ~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~----~~g~~~v~~~~~~~~~~~~  126 (240)
                      .+....++     +++.+||=+| +| .|..+..+++..|++|++++- +...+.++    ..|...-+.....+...+.
T Consensus        58 ~l~~~~~l-----~~~~~vLDiG-cG-~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~  130 (282)
T d2o57a1          58 ELAMTGVL-----QRQAKGLDLG-AG-YGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP  130 (282)
T ss_dssp             HHHHTTCC-----CTTCEEEEET-CT-TSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS
T ss_pred             HHHHhcCC-----CCCCEEEEeC-CC-CcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccccccccccccccccc
Confidence            34456677     8999999998 44 566777888888999999995 45444443    3443211111111111111


Q ss_pred             CCCCCcccEEEeCCC-----C--CCccccccCCCCCcEEEEeC
Q 045248          127 SPSGRKYDAVIHCAT-----G--IPWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       127 ~~~~~~~d~v~d~~g-----~--~~~~~~~~~l~~~G~iv~~g  162 (240)
                       .....||+|+-.-.     .  ..+..+.+.|+|||+++...
T Consensus       131 -~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~  172 (282)
T d2o57a1         131 -CEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITD  172 (282)
T ss_dssp             -SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -ccccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEE
Confidence             13356999975332     1  12667788999999988664

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=96.20  E-value=0.089  Score=35.74  Aligned_cols=94  Identities=18%  Similarity=0.081  Sum_probs=65.5

Q ss_pred             hhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHH-HHHhcCCCEEEeC
Q 045248           40 SGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIE-FVKSLGADEVLDY  117 (240)
Q Consensus        40 a~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~-~~~~~g~~~v~~~  117 (240)
                      ..+||+....+..+ ++.++.    -.|++++|+|.+.-+|.-+..++...|+.|+.+.+. ...+ ..           
T Consensus        15 ~~~PcTp~aI~~lL-~~y~i~----l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~~~~-----------   78 (166)
T d1b0aa1          15 RLRPCTPRGIVTLL-ERYNID----TFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHV-----------   78 (166)
T ss_dssp             SSCCHHHHHHHHHH-HHTTCC----CTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHHH-----------
T ss_pred             CCCCchHHHHHHHH-HHcCcc----cccceEEEEeccccccHHHHHHHHHhhccccccccccchhHHHH-----------
Confidence            45677776666666 555553    489999999988889999999999999998776643 2222 11           


Q ss_pred             CCCccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCC
Q 045248          118 KTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~  163 (240)
                                   ...|+++-++|.+.+- --+.++++..++.+|.
T Consensus        79 -------------~~ADivI~a~G~p~~i-~~~~vk~g~vvIDvGi  110 (166)
T d1b0aa1          79 -------------ENADLLIVAVGKPGFI-PGDWIKEGAIVIDVGI  110 (166)
T ss_dssp             -------------HHCSEEEECSCCTTCB-CTTTSCTTCEEEECCC
T ss_pred             -------------hhhhHhhhhccCcccc-cccccCCCcEEEecCc
Confidence                         2366777777765422 2356778888887775

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.17  E-value=0.013  Score=39.56  Aligned_cols=80  Identities=19%  Similarity=0.235  Sum_probs=52.7

Q ss_pred             eEEEEcCCchHHHHHHH-HHHhCCCEEEEEeCc-ccHHHHH-hcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCCc
Q 045248           69 NILVTAASGGVGHYAVQ-LAKLGNTHVTASCGA-RNIEFVK-SLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPW  145 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~-~a~~~g~~v~~~~~~-~~~~~~~-~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~  145 (240)
                      +|.++| +|.+|.+.++ +++.-+.+|++..++ ++.+.++ ++|.. +.+..+    .+     ...|+||=++-...+
T Consensus         2 kI~fIG-~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~-~~~~~~----~v-----~~~Div~lavkP~~~   70 (152)
T d1yqga2           2 NVYFLG-GGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVE-TSATLP----EL-----HSDDVLILAVKPQDM   70 (152)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCE-EESSCC----CC-----CTTSEEEECSCHHHH
T ss_pred             EEEEEc-CcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccc-cccccc----cc-----cccceEEEecCHHHH
Confidence            588999 8999998776 555544699988875 6666654 56643 332211    11     236899988875446


Q ss_pred             cccccCCCCCcEEE
Q 045248          146 STFEPNLGTNGKVI  159 (240)
Q Consensus       146 ~~~~~~l~~~G~iv  159 (240)
                      ...++-+++.++++
T Consensus        71 ~~v~~~l~~~~~~v   84 (152)
T d1yqga2          71 EAACKNIRTNGALV   84 (152)
T ss_dssp             HHHHTTCCCTTCEE
T ss_pred             HHhHHHHhhcccEE
Confidence            66677777666544

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.15  E-value=0.0025  Score=46.31  Aligned_cols=95  Identities=18%  Similarity=0.175  Sum_probs=54.2

Q ss_pred             CCCCeEEEEcCCchH-HHHHHHHHHhCC----CEEEEEeCc-ccHHHHHh---------cCCCEEEeCCCCccccccCCC
Q 045248           65 GQQKNILVTAASGGV-GHYAVQLAKLGN----THVTASCGA-RNIEFVKS---------LGADEVLDYKTPDGAALKSPS  129 (240)
Q Consensus        65 ~~g~~vlV~G~~g~v-G~~~~~~a~~~g----~~v~~~~~~-~~~~~~~~---------~g~~~v~~~~~~~~~~~~~~~  129 (240)
                      +++++||.+|..+|- ...+.+++...|    .+|++++.. +-.+.+++         .+...+.... .+.. .....
T Consensus        79 ~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~-~d~~-~~~~~  156 (223)
T d1r18a_          79 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE-GDGR-KGYPP  156 (223)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SCGG-GCCGG
T ss_pred             CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEe-cccc-ccccc
Confidence            899999999943332 233445555555    389999864 33333321         2222221111 1100 01112


Q ss_pred             CCcccEEEeCCCCCC-ccccccCCCCCcEEEEe
Q 045248          130 GRKYDAVIHCATGIP-WSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       130 ~~~~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~  161 (240)
                      ...||.|+-+.+-+. -...++.|++||++|..
T Consensus       157 ~~~fD~Iiv~~a~~~~p~~l~~~Lk~gG~lV~p  189 (223)
T d1r18a_         157 NAPYNAIHVGAAAPDTPTELINQLASGGRLIVP  189 (223)
T ss_dssp             GCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEE
T ss_pred             ccceeeEEEEeechhchHHHHHhcCCCcEEEEE
Confidence            357999987776543 56778899999999763

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=96.12  E-value=0.0019  Score=46.86  Aligned_cols=98  Identities=19%  Similarity=0.216  Sum_probs=61.4

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH----hcCCCEEEeCCCCccccccCCC
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK----SLGADEVLDYKTPDGAALKSPS  129 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~----~~g~~~v~~~~~~~~~~~~~~~  129 (240)
                      +.+++     +++++||=+| +| .|..+..+++. |++|++++.+ +..+.++    +.+...+ .+...+..... ..
T Consensus         9 ~~~~l-----~~~~rVLDiG-cG-~G~~~~~l~~~-~~~v~gvD~s~~~i~~A~~~~~~~~~~~i-~~~~~d~~~l~-~~   78 (231)
T d1vl5a_           9 QIAAL-----KGNEEVLDVA-TG-GGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGHQQV-EYVQGDAEQMP-FT   78 (231)
T ss_dssp             HHHTC-----CSCCEEEEET-CT-TCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCCSE-EEEECCC-CCC-SC
T ss_pred             HhcCC-----CCcCEEEEec-cc-CcHHHHHHHHh-CCEEEEEECCHHHHhhhhhcccccccccc-ccccccccccc-cc
Confidence            66777     8999999999 44 67667777654 7899999954 5445543    4454322 11111111111 12


Q ss_pred             CCcccEEEeCCC-----C--CCccccccCCCCCcEEEEeC
Q 045248          130 GRKYDAVIHCAT-----G--IPWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       130 ~~~~d~v~d~~g-----~--~~~~~~~~~l~~~G~iv~~g  162 (240)
                      .+.||+|+-.-.     .  ..+..+.+.|+|||+++...
T Consensus        79 ~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~  118 (231)
T d1vl5a_          79 DERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVD  118 (231)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            457999975543     2  12677888999999988764

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0015  Score=47.66  Aligned_cols=95  Identities=7%  Similarity=-0.053  Sum_probs=58.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHhcCC---CEEEeCCCCc-cccccCCCCCcccEE-Ee
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGA---DEVLDYKTPD-GAALKSPSGRKYDAV-IH  138 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~---~~v~~~~~~~-~~~~~~~~~~~~d~v-~d  138 (240)
                      .+|.+||-+|  .|.|..+..+++..+.+|++++- +...+.+++...   ..+.. ...+ ...........||.+ +|
T Consensus        52 ~~g~~VLdIG--cG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~fD~i~fD  128 (229)
T d1zx0a1          52 SKGGRVLEVG--FGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIP-LKGLWEDVAPTLPDGHFDGILYD  128 (229)
T ss_dssp             TTCEEEEEEC--CTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEE-EESCHHHHGGGSCTTCEEEEEEC
T ss_pred             cCCCeEEEee--ccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhccccccc-ccccccccccccccccccceeec
Confidence            5788999998  45677788888877778988885 466676654321   11111 1111 111223344678888 57


Q ss_pred             CCCCC-----------CccccccCCCCCcEEEEeC
Q 045248          139 CATGI-----------PWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       139 ~~g~~-----------~~~~~~~~l~~~G~iv~~g  162 (240)
                      .+...           .+..+.+.|+|||+++...
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~  163 (229)
T d1zx0a1         129 TYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  163 (229)
T ss_dssp             CCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             ccccccccccccCHHHHHHHHHHHcCCCcEEEEEe
Confidence            66421           2345677899999987653

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=96.07  E-value=0.0074  Score=40.70  Aligned_cols=94  Identities=15%  Similarity=0.094  Sum_probs=64.8

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCC--CEEEEEeC--c-c-cHHHHHhcCCCEEEeCCCCcccc-----------------
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGN--THVTASCG--A-R-NIEFVKSLGADEVLDYKTPDGAA-----------------  124 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g--~~v~~~~~--~-~-~~~~~~~~g~~~v~~~~~~~~~~-----------------  124 (240)
                      ++|.|.|++|.+|..++++.+.+.  ++|++++-  + + -.+.++++.+..++-.++.....                 
T Consensus         3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~~~~~~l~~~~~~~~~~v~~g~~   82 (150)
T d1r0ka2           3 RTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGAD   82 (150)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEESHH
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCCCHHHHHHHHHhhccccceeccHHHHHHHHHHhhhcccccccCcc
Confidence            789999999999999999999873  58888873  2 2 24666889988776443322100                 


Q ss_pred             -ccCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEe
Q 045248          125 -LKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       125 -~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~  161 (240)
                       +.+.....+|+++.++.+ ..+...+.+++.+-++.+.
T Consensus        83 ~l~~~~~~~~D~vv~Ai~G~~GL~~tl~ai~~gk~iaLA  121 (150)
T d1r0ka2          83 ALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVALA  121 (150)
T ss_dssp             HHHHHHTSCCSEEEECCCSGGGHHHHHHHHHTTSEEEEC
T ss_pred             chheecccccceeeeecCchhHHHHHHHHHhcCCEEEEe
Confidence             011123458999998766 4477888888877666544

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.02  E-value=0.0051  Score=43.71  Aligned_cols=55  Identities=7%  Similarity=0.059  Sum_probs=41.4

Q ss_pred             CCCcccceEEEecCCceeeCCCCCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHH
Q 045248           11 HNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGH   81 (240)
Q Consensus        11 ~~~G~~~e~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~   81 (240)
                      +.+|+|+||+.+++..++++|++++.+.++...+...+          +     .++++|||.| +|++|+
T Consensus       141 ~~~g~faey~~v~~~~~~kip~~~~~~~~~~~~~~~~~----------v-----~~~~~vlv~G-~G~iGl  195 (198)
T d1p0fa1         141 MGTSTFTEYTVVADIAVAKIDPKINVNFLVSTKLTLDQ----------I-----NKAFELLSSG-QGVRSI  195 (198)
T ss_dssp             TTTCCSBSEEEEETTSEEEECTTSCGGGGEEEEECGGG----------H-----HHHHHHTTTS-SCSEEE
T ss_pred             CCCccceeeEEecHHHEEECCCCCCHHHHHHhhcchhh----------c-----CCCCEEEEEC-CCcceE
Confidence            34699999999999999999999998887665544222          1     3455677778 788775

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=96.02  E-value=0.00063  Score=49.86  Aligned_cols=101  Identities=13%  Similarity=0.234  Sum_probs=62.8

Q ss_pred             HHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCCEEEeCCCCcccccc
Q 045248           52 ALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGADEVLDYKTPDGAALK  126 (240)
Q Consensus        52 ~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~~v~~~~~~~~~~~~  126 (240)
                      .+.+.+.+     ++|++||=+|  .|.|..+..+++. +.+|++++-+ ...+.+    ++.|...+ .....+.....
T Consensus         7 ~l~~~~~~-----~~~~rILDiG--cGtG~~~~~la~~-~~~v~gvD~S~~~l~~A~~~~~~~~~~~~-~~~~~d~~~~~   77 (234)
T d1xxla_           7 LMIKTAEC-----RAEHRVLDIG--AGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVENV-RFQQGTAESLP   77 (234)
T ss_dssp             HHHHHHTC-----CTTCEEEEES--CTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTCCSE-EEEECBTTBCC
T ss_pred             HHHHHhCC-----CCCCEEEEeC--CcCcHHHHHHHHh-CCeEEEEeCChhhhhhhhhhhcccccccc-ccccccccccc
Confidence            35578888     9999999998  3456667777774 6799999954 544444    34443322 11111111111


Q ss_pred             CCCCCcccEEEeCCC-----C--CCccccccCCCCCcEEEEeC
Q 045248          127 SPSGRKYDAVIHCAT-----G--IPWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       127 ~~~~~~~d~v~d~~g-----~--~~~~~~~~~l~~~G~iv~~g  162 (240)
                       ...+.||+|+-+-.     .  ..+..+.+.|+|+|+++...
T Consensus        78 -~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~  119 (234)
T d1xxla_          78 -FPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVD  119 (234)
T ss_dssp             -SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -ccccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEE
Confidence             13457999986443     1  12677888999999987753

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.12  Score=35.32  Aligned_cols=95  Identities=17%  Similarity=0.095  Sum_probs=66.8

Q ss_pred             hhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCC
Q 045248           40 SGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYK  118 (240)
Q Consensus        40 a~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~  118 (240)
                      +.+|++....+..+ ++.++.    -.|++++|+|.+.-+|.-+..++...|+.|+.+.+. .......           
T Consensus        17 ~~~PcTp~aii~lL-~~~~i~----l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~~~~-----------   80 (170)
T d1a4ia1          17 CFIPCTPKGCLELI-KETGVP----IAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEV-----------   80 (170)
T ss_dssp             CCCCHHHHHHHHHH-HTTTCC----CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHH-----------
T ss_pred             CCCCChHHHHHHHH-HHhCcc----cccceEEEEecCCccchHHHHHHHhccCceEEEecccccHHHHH-----------
Confidence            55688877777777 666664    489999999988889999999999999999988753 3322110           


Q ss_pred             CCccccccCCCCCcccEEEeCCCCCCccccccCCCCCcEEEEeCC
Q 045248          119 TPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       119 ~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~g~  163 (240)
                                  ...|+++-++|.+.+- --+.++++-.++.+|.
T Consensus        81 ------------~~aDivi~a~G~~~~i-~~~~vk~g~iviDvgi  112 (170)
T d1a4ia1          81 ------------NKGDILVVATGQPEMV-KGEWIKPGAIVIDCGI  112 (170)
T ss_dssp             ------------TTCSEEEECCCCTTCB-CGGGSCTTCEEEECCC
T ss_pred             ------------hhccchhhcccccccc-ccccccCCCeEeccCc
Confidence                        2356777777765431 2346777777777774

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.0054  Score=44.60  Aligned_cols=73  Identities=22%  Similarity=0.216  Sum_probs=45.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCC--EEEEEeCc-cc--HHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNT--HVTASCGA-RN--IEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCA  140 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~~~-~~--~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~  140 (240)
                      .+++|||+||+|-+|..+++.+...|.  +|+++.+. .+  .+....... .+.|..+.+ .....  -.++|+++.++
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~-~~~D~~~~~-~~~~~--~~~~d~vi~~~   88 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQ-EVVDFEKLD-DYASA--FQGHDVGFCCL   88 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEE-EECCGGGGG-GGGGG--GSSCSEEEECC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeee-eeecccccc-ccccc--ccccccccccc
Confidence            557999999999999999988887775  89999963 22  111111110 112222211 11111  14689999999


Q ss_pred             CC
Q 045248          141 TG  142 (240)
Q Consensus       141 g~  142 (240)
                      |.
T Consensus        89 ~~   90 (232)
T d2bkaa1          89 GT   90 (232)
T ss_dssp             CC
T ss_pred             cc
Confidence            84

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.98  E-value=0.0043  Score=45.27  Aligned_cols=33  Identities=24%  Similarity=0.208  Sum_probs=30.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      +++||+||++|+|.+.++.+...|++|+.+.++
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~   34 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLR   34 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            688999999999999999999999999999864

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.97  E-value=0.02  Score=35.32  Aligned_cols=71  Identities=13%  Similarity=0.099  Sum_probs=50.3

Q ss_pred             CCCCCCCeEEEEcCCchHHHHH-HHHHHhCCCEEEEEeCc--ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEe
Q 045248           62 DGSGQQKNILVTAASGGVGHYA-VQLAKLGNTHVTASCGA--RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIH  138 (240)
Q Consensus        62 ~~~~~g~~vlV~G~~g~vG~~~-~~~a~~~g~~v~~~~~~--~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d  138 (240)
                      |.....+++.++| -||+|..+ +++++..|++|...+..  ...+.+++.|.. +.....+  ..+     .+.|+|+-
T Consensus         3 ~~~~~~~~ihfiG-igG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~-v~~g~~~--~~i-----~~~d~vV~   73 (96)
T d1p3da1           3 PEMRRVQQIHFIG-IGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAK-IYIGHAE--EHI-----EGASVVVV   73 (96)
T ss_dssp             CCCTTCCEEEEET-TTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCE-EEESCCG--GGG-----TTCSEEEE
T ss_pred             ccchhCCEEEEEE-ECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCe-EEECCcc--ccC-----CCCCEEEE
Confidence            3347889999999 89999665 89999999999999953  567777888875 3332221  111     34677776


Q ss_pred             CCC
Q 045248          139 CAT  141 (240)
Q Consensus       139 ~~g  141 (240)
                      +.+
T Consensus        74 S~A   76 (96)
T d1p3da1          74 SSA   76 (96)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            655

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.97  E-value=0.0011  Score=43.72  Aligned_cols=72  Identities=10%  Similarity=-0.003  Sum_probs=49.5

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCCcccc
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTF  148 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~  148 (240)
                      +|.|+|++|-+|....+++...+.+++......                 .  ...+     ..+|+++|++..+.....
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~-----------------~--~~~~-----~~~DVvIDFS~p~~~~~~   57 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVN-----------------G--VEEL-----DSPDVVIDFSSPEALPKT   57 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETT-----------------E--EEEC-----SCCSEEEECSCGGGHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCC-----------------c--HHHh-----ccCCEEEEecCHHHHHHH
Confidence            589999899999999999999998776543210                 0  0011     347899999988776666


Q ss_pred             ccCCCCCcEEEEeCCC
Q 045248          149 EPNLGTNGKVIDITPG  164 (240)
Q Consensus       149 ~~~l~~~G~iv~~g~~  164 (240)
                      ++.....+.=+.+|..
T Consensus        58 l~~~~~~~~p~ViGTT   73 (128)
T d1vm6a3          58 VDLCKKYRAGLVLGTT   73 (128)
T ss_dssp             HHHHHHHTCEEEECCC
T ss_pred             HHHHHhcCCCEEEEcC
Confidence            6666566655556543

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.95  E-value=0.0048  Score=47.94  Aligned_cols=77  Identities=18%  Similarity=0.054  Sum_probs=47.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      .++.+|||+||+|-+|..++..+...|.+|+++++..................+-.+....... -.++|.|+.+++.
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~Vih~a~~   89 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKV-TEGVDHVFNLAAD   89 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHH-HTTCSEEEECCCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHH-hhcCCeEeecccc
Confidence            4678999999999999999999999999999987532111111222222222211111111111 1478999998863

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.95  E-value=0.0092  Score=40.19  Aligned_cols=33  Identities=21%  Similarity=0.209  Sum_probs=30.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      .|++|||+| +|.+|..-+..+...|++|+++++
T Consensus        12 ~gkrvLViG-gG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          12 KDKRILLIG-GGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             TTCEEEEEE-ESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeC
Confidence            789999999 799999999999999999999875

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=95.93  E-value=0.015  Score=40.18  Aligned_cols=97  Identities=12%  Similarity=0.029  Sum_probs=61.3

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCC-EEEEEeC--c-ccHHHHHhcCCCEEEeCCCCc--ccc--ccC-----CCCCcccE
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNT-HVTASCG--A-RNIEFVKSLGADEVLDYKTPD--GAA--LKS-----PSGRKYDA  135 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~--~-~~~~~~~~~g~~~v~~~~~~~--~~~--~~~-----~~~~~~d~  135 (240)
                      +|.|.| .|-+|...++.+...+- +++++..  + ....++..++.+......+..  ...  +..     ..-.++|+
T Consensus         3 ~VgING-fGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDv   81 (171)
T d1cf2o1           3 AVAING-YGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (171)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             EEEEEc-CcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCCE
Confidence            689999 99999999998887775 8887773  2 344566666655333222111  000  000     00146999


Q ss_pred             EEeCCCCC-CccccccCCCCCcEEEEeCCCch
Q 045248          136 VIHCATGI-PWSTFEPNLGTNGKVIDITPGPS  166 (240)
Q Consensus       136 v~d~~g~~-~~~~~~~~l~~~G~iv~~g~~~~  166 (240)
                      |+||+|.- ....+-..+..+-+.+..+++..
T Consensus        82 ViEcTG~f~~~~~~~~hl~~G~K~vi~~~~~~  113 (171)
T d1cf2o1          82 VIDCTPEGIGAKNLKMYKEKGIKAIFQGGEKH  113 (171)
T ss_dssp             EEECCSTTHHHHHHHHHHHTTCEEEECTTSCH
T ss_pred             EEEccCCCCCHHHHHHHHHcCCCEEEECCCCc
Confidence            99999963 35556667777778887766543

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.0054  Score=46.67  Aligned_cols=68  Identities=21%  Similarity=0.189  Sum_probs=44.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC--cccHHHHHhcCC---CEEEeCCCCccccccCCCCCcccEEEeCCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCG--ARNIEFVKSLGA---DEVLDYKTPDGAALKSPSGRKYDAVIHCAT  141 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~--~~~~~~~~~~g~---~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g  141 (240)
                      ++|||+||+|-+|..++..+...|.+|+++++  +.+.+.....-.   -.+.+.+.     .+. .-.++|+||.+++
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~-~~~~~d~VihlAa   74 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDV-----VEP-LYIEVDQIYHLAS   74 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCT-----TSC-CCCCCSEEEECCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHhcCCCceEEEehHH-----HHH-HHcCCCEEEECcc
Confidence            68999999999999999998889999999874  233333322211   12222111     111 1136999999886

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=95.75  E-value=0.0074  Score=44.40  Aligned_cols=33  Identities=9%  Similarity=0.184  Sum_probs=29.7

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      +.|||+||++++|.++++.+...|++|+.+.++
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~   34 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIR   34 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            468999999999999999999999999988853

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.013  Score=44.10  Aligned_cols=75  Identities=17%  Similarity=0.179  Sum_probs=44.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEE---eCc-ccHH----HHHhc---CCC-EEE--eCCCCc--cccccCCCCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTAS---CGA-RNIE----FVKSL---GAD-EVL--DYKTPD--GAALKSPSGR  131 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~---~~~-~~~~----~~~~~---g~~-~v~--~~~~~~--~~~~~~~~~~  131 (240)
                      +.+||+||++|+|.++++.+...|++|+.+   .++ ++.+    .++++   +.. ..+  |..+.+  ...+.....+
T Consensus         3 kVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~g   82 (285)
T d1jtva_           3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTEG   82 (285)
T ss_dssp             EEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTTS
T ss_pred             CEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhcccc
Confidence            456889999999999999998899865433   332 2222    22333   222 222  222222  1222333346


Q ss_pred             cccEEEeCCCC
Q 045248          132 KYDAVIHCATG  142 (240)
Q Consensus       132 ~~d~v~d~~g~  142 (240)
                      .+|+++.+.|.
T Consensus        83 ~idilvnnag~   93 (285)
T d1jtva_          83 RVDVLVCNAGL   93 (285)
T ss_dssp             CCSEEEECCCC
T ss_pred             chhhhhhcccc
Confidence            79999999983

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.67  E-value=0.011  Score=42.09  Aligned_cols=68  Identities=22%  Similarity=0.178  Sum_probs=41.8

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCC--EEEEEeCcccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNT--HVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      ++|||+||+|-+|..+++.+...|.  +|++..+....+       ..-+.....+...........+|.|+.++|.
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~-------~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~   72 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE-------HPRLDNPVGPLAELLPQLDGSIDTAFCCLGT   72 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC-------CTTEECCBSCHHHHGGGCCSCCSEEEECCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh-------cccccccccchhhhhhccccchheeeeeeee
Confidence            6899999999999999998888886  677666431110       0001111111111222223568999999974

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.67  E-value=0.015  Score=36.96  Aligned_cols=35  Identities=14%  Similarity=0.089  Sum_probs=31.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ..+.+|.|+| +|.+|.+.++-|+.+|+++++.+++
T Consensus         9 ~~~~kigIlG-gGQL~rMla~aA~~lG~~v~v~d~~   43 (111)
T d1kjqa2           9 PAATRVMLLG-SGELGKEVAIECQRLGVEVIAVDRY   43 (111)
T ss_dssp             TTCCEEEEES-CSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCCCEEEEEe-CCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            4556799999 8999999999999999999999965

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.65  E-value=0.014  Score=40.54  Aligned_cols=96  Identities=9%  Similarity=-0.027  Sum_probs=57.5

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCC-EEEEEeC--c-ccHHHHHhcCCCEEEeCCCCc-cc--cccCC-----CCCcccEE
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNT-HVTASCG--A-RNIEFVKSLGADEVLDYKTPD-GA--ALKSP-----SGRKYDAV  136 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~--~-~~~~~~~~~g~~~v~~~~~~~-~~--~~~~~-----~~~~~d~v  136 (240)
                      +|.|.| .|-+|...++.+..+.- +++++..  + .....+...+........... ..  .+...     ...++|+|
T Consensus         3 KVaING-fGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiV   81 (178)
T d1b7go1           3 NVAVNG-YGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (178)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             EEEEEC-CCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEE
Confidence            688999 99999999999997764 8888874  2 234444444433222111100 00  00000     01368999


Q ss_pred             EeCCCCCC-ccccccCCCCCcEEEEeCCCc
Q 045248          137 IHCATGIP-WSTFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus       137 ~d~~g~~~-~~~~~~~l~~~G~iv~~g~~~  165 (240)
                      +||+|.-. .+.+-..++.+-+++..++..
T Consensus        82 iecTG~f~~~e~a~~hl~~G~KvIi~~~~~  111 (178)
T d1b7go1          82 VDTTPNGVGAQYKPIYLQLQRNAIFQGGEK  111 (178)
T ss_dssp             EECCSTTHHHHHHHHHHHTTCEEEECTTSC
T ss_pred             EECCCCcCCHHHHHHHHHcCCEEEEECCCC
Confidence            99999633 555556676666777666543

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.65  E-value=0.033  Score=35.91  Aligned_cols=35  Identities=20%  Similarity=0.265  Sum_probs=31.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .++++++|+| +|.+|.-++..++.+|.+|..+.+.
T Consensus        28 ~~~~~vvIIG-gG~iG~E~A~~l~~~g~~Vtli~~~   62 (121)
T d1d7ya2          28 RPQSRLLIVG-GGVIGLELAATARTAGVHVSLVETQ   62 (121)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             hcCCeEEEEC-cchhHHHHHHHhhcccceEEEEeec
Confidence            5679999999 8999999999999999999988853

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.62  E-value=0.011  Score=43.26  Aligned_cols=75  Identities=17%  Similarity=0.184  Sum_probs=46.0

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCE-------EEEEeCc-ccHHHH----HhcCCCE-EE--eCCCCc--cccccC--C
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTH-------VTASCGA-RNIEFV----KSLGADE-VL--DYKTPD--GAALKS--P  128 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~-------v~~~~~~-~~~~~~----~~~g~~~-v~--~~~~~~--~~~~~~--~  128 (240)
                      +.+||+||++|+|.++++.+...|++       |+...++ ++.+.+    ++.|... .+  |-++.+  ...++.  .
T Consensus         2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVE   81 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            34799999999999999888888876       6666664 444433    3455432 22  222222  111111  1


Q ss_pred             CCCcccEEEeCCCC
Q 045248          129 SGRKYDAVIHCATG  142 (240)
Q Consensus       129 ~~~~~d~v~d~~g~  142 (240)
                      .-+++|+++++.|.
T Consensus        82 ~~g~iDilvnnAg~   95 (240)
T d2bd0a1          82 RYGHIDCLVNNAGV   95 (240)
T ss_dssp             HTSCCSEEEECCCC
T ss_pred             HcCCcceeeccccc
Confidence            22479999999984

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.55  E-value=0.026  Score=38.38  Aligned_cols=107  Identities=10%  Similarity=0.013  Sum_probs=65.8

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC-c
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP-W  145 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~-~  145 (240)
                      ++|.++| .|.+|...+.-+...|++|.+..++ ++.+.+...+....-   .. ....     ...|+++-|+.... .
T Consensus         2 ~kIg~IG-lG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~---~~-~e~~-----~~~diii~~v~~~~~~   71 (162)
T d3cuma2           2 KQIAFIG-LGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAAR---SA-RDAV-----QGADVVISMLPASQHV   71 (162)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECS---SH-HHHH-----TSCSEEEECCSCHHHH
T ss_pred             CEEEEEE-EHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccc---hh-hhhc-----cccCeeeecccchhhH
Confidence            3688999 9999999888888889999999875 677777777754221   11 1111     23678888887432 2


Q ss_pred             cc-------cccCCCCCcEEEEeCCCchHHHHHHHhhheeccceee
Q 045248          146 ST-------FEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLV  184 (240)
Q Consensus       146 ~~-------~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~  184 (240)
                      ..       ....+.++-.++.++.............+..+++.+.
T Consensus        72 ~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~  117 (162)
T d3cuma2          72 EGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAML  117 (162)
T ss_dssp             HHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEE
Confidence            21       2334667777777776544333333333334444443

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.54  E-value=0.032  Score=41.69  Aligned_cols=32  Identities=19%  Similarity=0.154  Sum_probs=30.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEe
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASC   98 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~   98 (240)
                      .|.+|+|.| .|.+|..+++++...|++|++++
T Consensus        35 ~gktvaIqG-fGnVG~~~A~~L~e~Gakvv~vs   66 (293)
T d1hwxa1          35 GDKTFAVQG-FGNVGLHSMRYLHRFGAKCVAVG   66 (293)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEE
Confidence            689999999 99999999999999999999887

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=95.53  E-value=0.01  Score=45.73  Aligned_cols=35  Identities=20%  Similarity=0.159  Sum_probs=32.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ++++|||+||+|-+|..+++.+...|++|+++++.
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~   41 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLT   41 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            67999999999999999999999999999999963

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.52  E-value=0.013  Score=45.95  Aligned_cols=33  Identities=15%  Similarity=0.096  Sum_probs=29.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      |.+|||+||+|-+|..+++.+...|.+|++++.
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDn   33 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDN   33 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEec
Confidence            679999999999999999999999999999863

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.49  E-value=0.0086  Score=44.30  Aligned_cols=41  Identities=20%  Similarity=0.181  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCCchHHHHHHH-HHH--hCCCEEEEEeCc-ccHHHH
Q 045248           66 QQKNILVTAASGGVGHYAVQ-LAK--LGNTHVTASCGA-RNIEFV  106 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~-~a~--~~g~~v~~~~~~-~~~~~~  106 (240)
                      .|+.++|+||++|+|.++++ +|+  ..|++|+.+.++ ++++.+
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~   49 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQL   49 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHH
Confidence            67889999999999998775 455  378999999975 555444

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.48  E-value=0.0022  Score=47.20  Aligned_cols=88  Identities=18%  Similarity=0.171  Sum_probs=55.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHh----cCCC-EEEeCCCCccccccCCCCCcccEEEe
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKS----LGAD-EVLDYKTPDGAALKSPSGRKYDAVIH  138 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~----~g~~-~v~~~~~~~~~~~~~~~~~~~d~v~d  138 (240)
                      ++.++||=+| +|. |..+..+++ .|++|++++.+ +-.+.+++    .+.. ..+..+   ...+  ..++.||+|+-
T Consensus        40 ~~~~~iLDiG-cGt-G~~~~~l~~-~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d---~~~l--~~~~~fD~I~~  111 (251)
T d1wzna1          40 REVRRVLDLA-CGT-GIPTLELAE-RGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGD---VLEI--AFKNEFDAVTM  111 (251)
T ss_dssp             SCCCEEEEET-CTT-CHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESC---GGGC--CCCSCEEEEEE
T ss_pred             CCCCEEEEeC-CCC-Cccchhhcc-cceEEEEEeeccccccccccccccccccchheehh---hhhc--ccccccchHhh
Confidence            6778999998 553 777777766 68899999954 55555543    3322 222211   1111  12357999886


Q ss_pred             CCCC----------CCccccccCCCCCcEEEE
Q 045248          139 CATG----------IPWSTFEPNLGTNGKVID  160 (240)
Q Consensus       139 ~~g~----------~~~~~~~~~l~~~G~iv~  160 (240)
                      ..+.          ..+..+.+.|+|||.++.
T Consensus       112 ~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii  143 (251)
T d1wzna1         112 FFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT  143 (251)
T ss_dssp             CSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhhhhhcCChHHHHHHHHHHHHHcCCCcEEEE
Confidence            5431          125567788999998864

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.47  E-value=0.016  Score=45.76  Aligned_cols=106  Identities=11%  Similarity=0.036  Sum_probs=62.9

Q ss_pred             HHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeC-cccHHHHHh-----------cCC--C-
Q 045248           49 AHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCG-ARNIEFVKS-----------LGA--D-  112 (240)
Q Consensus        49 a~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~-----------~g~--~-  112 (240)
                      ..+.+ +..++     ++|+++|=+|  +|+|..+.++|+..|+ +|++++- +...+.+++           .|.  . 
T Consensus       205 i~~Il-~~l~L-----kpgd~fLDLG--CG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~  276 (406)
T d1u2za_         205 LSDVY-QQCQL-----KKGDTFMDLG--SGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNN  276 (406)
T ss_dssp             HHHHH-HHTTC-----CTTCEEEEES--CTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCC
T ss_pred             HHHHH-HHhCC-----CCCCEEEeCC--CCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcccccc
Confidence            34455 77788     8999988777  6789999999999998 8999994 444444432           111  1 


Q ss_pred             EEEeCCCCc-cccccCCCCCcccEEEeCCC---C---CCccccccCCCCCcEEEEeC
Q 045248          113 EVLDYKTPD-GAALKSPSGRKYDAVIHCAT---G---IPWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       113 ~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g---~---~~~~~~~~~l~~~G~iv~~g  162 (240)
                      ..+...... ........-..+|+++-..-   .   ..+....+.|+|||+++...
T Consensus       277 ~~~~~~~~f~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         277 VEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             EEEEESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             ceeeeeechhhccccccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence            111111100 00000001124677764321   1   12667888999999999865

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.42  E-value=0.013  Score=40.80  Aligned_cols=38  Identities=8%  Similarity=0.069  Sum_probs=31.8

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV  106 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~  106 (240)
                      +|.|+||+|++|.++.+.+...|++|+...++ ++.+.+
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l   40 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAK   40 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            57888779999999999999999999999975 554444

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=95.40  E-value=0.029  Score=38.42  Aligned_cols=94  Identities=12%  Similarity=0.131  Sum_probs=57.7

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc---ccHHHHHhcCC-----CEEEeCCCC---------------ccccc
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA---RNIEFVKSLGA-----DEVLDYKTP---------------DGAAL  125 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~g~-----~~v~~~~~~---------------~~~~~  125 (240)
                      +|.|.| -|-+|.++.+.+...+.+++++-..   +...++-++-.     ...+...+.               +...+
T Consensus         2 kigING-fGRIGR~~~R~l~~~~i~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p~~i   80 (168)
T d2g82a1           2 KVGING-FGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEI   80 (168)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHTCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGGGC
T ss_pred             EEEEEC-CcHHHHHHHHHHhcCCCEEEEECCCcchhhhhheeecccccCccccccccccceeEecceeEEEEecCChHHC
Confidence            588999 9999999999988888888888753   34444433211     111111111               01111


Q ss_pred             cCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEeCCC
Q 045248          126 KSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       126 ~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      .+ ...++|+|+||+|. ...+.+...++.+.+=|.+..+
T Consensus        81 ~W-~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP  119 (168)
T d2g82a1          81 PW-AEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAP  119 (168)
T ss_dssp             CT-GGGTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred             cc-cccCCceeEeccccccchHHhhhhhccccceeeeccc
Confidence            11 22479999999996 4466777778877655555544

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=95.39  E-value=0.0087  Score=41.87  Aligned_cols=93  Identities=22%  Similarity=0.206  Sum_probs=56.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc--c--cHHHH-HhcCCCEEEeCCCCccccccCCCCCcccEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA--R--NIEFV-KSLGADEVLDYKTPDGAALKSPSGRKYDAVIHC  139 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~--~--~~~~~-~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~  139 (240)
                      +.=+|.|+||+|-+|.-+++++..+.. ++..+.++  .  +.... ..+...     ............-.+.|++|-+
T Consensus         4 ~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~Dvvf~a   78 (183)
T d2cvoa1           4 EEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQ-----DLPNLVAVKDADFSNVDAVFCC   78 (183)
T ss_dssp             SCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTS-----CCCCCBCGGGCCGGGCSEEEEC
T ss_pred             CccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCcccccccccccc-----ccccchhhhhhhhcccceeeec
Confidence            445789999999999999999998875 77666643  2  22222 111110     0000011111122569999999


Q ss_pred             CCCCCccccccCCCCCcEEEEeCC
Q 045248          140 ATGIPWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       140 ~g~~~~~~~~~~l~~~G~iv~~g~  163 (240)
                      .+..........+...+.++....
T Consensus        79 lp~~~s~~~~~~l~~~~~~v~~~~  102 (183)
T d2cvoa1          79 LPHGTTQEIIKGLPQELKIVDLSA  102 (183)
T ss_dssp             CSSSHHHHHHHTSCSSCEEEECSS
T ss_pred             cccchHHHHHHHHHhcCcccccch
Confidence            987664555566777787776653

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.37  E-value=0.013  Score=39.91  Aligned_cols=89  Identities=16%  Similarity=0.099  Sum_probs=59.5

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC-cc
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP-WS  146 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~-~~  146 (240)
                      +|.|+| .|.+|...++-+...|++|++..++ ++.+.+++.+... ..  .. ....     ...|+|+-|+..+. ..
T Consensus         2 kIgiIG-lG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~-~~--~~-~e~~-----~~~d~ii~~v~~~~~v~   71 (161)
T d1vpda2           2 KVGFIG-LGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAET-AS--TA-KAIA-----EQCDVIITMLPNSPHVK   71 (161)
T ss_dssp             EEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CS--SH-HHHH-----HHCSEEEECCSSHHHHH
T ss_pred             EEEEEe-hhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhh-cc--cH-HHHH-----hCCCeEEEEcCCHHHHH
Confidence            588999 9999999998888899999999875 7778887877632 11  11 1111     24688888886432 22


Q ss_pred             -------ccccCCCCCcEEEEeCCCchH
Q 045248          147 -------TFEPNLGTNGKVIDITPGPSA  167 (240)
Q Consensus       147 -------~~~~~l~~~G~iv~~g~~~~~  167 (240)
                             .....++++-.++.++.....
T Consensus        72 ~v~~~~~~~~~~~~~g~iiid~sT~~p~   99 (161)
T d1vpda2          72 EVALGENGIIEGAKPGTVLIDMSSIAPL   99 (161)
T ss_dssp             HHHHSTTCHHHHCCTTCEEEECSCCCHH
T ss_pred             HHHhCCcchhhccCCCCEEEECCCCCHH
Confidence                   234456677777777765443

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=95.36  E-value=0.012  Score=44.28  Aligned_cols=35  Identities=9%  Similarity=0.150  Sum_probs=31.7

Q ss_pred             CCCeEEEEcCCc--hHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASG--GVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g--~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      +|+++||+||+|  |+|.+.++.+...|++|+.+.++
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            789999999876  89999999999999999888764

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=95.34  E-value=0.013  Score=43.00  Aligned_cols=75  Identities=21%  Similarity=0.235  Sum_probs=47.8

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEe-Cc-ccHHHH----HhcCCCE-EE--eCCCCc--cccccC--CCCCccc
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASC-GA-RNIEFV----KSLGADE-VL--DYKTPD--GAALKS--PSGRKYD  134 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~-~~-~~~~~~----~~~g~~~-v~--~~~~~~--~~~~~~--~~~~~~d  134 (240)
                      +.+||+||++|+|.+.++.+...|++|+..+ ++ +..+.+    ++.|... .+  |-.+++  ...++.  ..-+++|
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   81 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTID   81 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCCS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence            4689999999999999999999999998876 33 333333    4555432 22  222222  111111  1225799


Q ss_pred             EEEeCCCC
Q 045248          135 AVIHCATG  142 (240)
Q Consensus       135 ~v~d~~g~  142 (240)
                      ++++++|.
T Consensus        82 iLVnnAg~   89 (244)
T d1edoa_          82 VVVNNAGI   89 (244)
T ss_dssp             EEEECCCC
T ss_pred             cccccccc
Confidence            99999983

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.28  E-value=0.014  Score=40.83  Aligned_cols=99  Identities=17%  Similarity=0.131  Sum_probs=58.7

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCC-EEEeCCCCccccccCC
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGAD-EVLDYKTPDGAALKSP  128 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~-~v~~~~~~~~~~~~~~  128 (240)
                      ...++     .++++||=+| + |.|...+.+|+. +.+|++++.+ +..+.+    ++.|.. .+ .....+.... ..
T Consensus        27 ~~l~~-----~~g~~VLDiG-c-GsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~~~v-~~~~gda~~~-~~   96 (186)
T d1l3ia_          27 CLAEP-----GKNDVAVDVG-C-GTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNV-TLMEGDAPEA-LC   96 (186)
T ss_dssp             HHHCC-----CTTCEEEEES-C-TTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTE-EEEESCHHHH-HT
T ss_pred             HhcCC-----CCCCEEEEEE-C-CeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCCcce-EEEECchhhc-cc
Confidence            44566     8999999887 3 345555666664 5699999954 555444    456642 22 1111111111 11


Q ss_pred             CCCcccEEEeCCCCCC----ccccccCCCCCcEEEEeCC
Q 045248          129 SGRKYDAVIHCATGIP----WSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       129 ~~~~~d~v~d~~g~~~----~~~~~~~l~~~G~iv~~g~  163 (240)
                      ....+|+|+-..+...    +..+.+.|+++|+++....
T Consensus        97 ~~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~  135 (186)
T d1l3ia_          97 KIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAI  135 (186)
T ss_dssp             TSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ccCCcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEee
Confidence            2356898886544322    6667788999999886654

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.27  E-value=0.0085  Score=40.53  Aligned_cols=85  Identities=13%  Similarity=0.102  Sum_probs=60.1

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCCcc
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWS  146 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  146 (240)
                      +|.++| +|.+|.+.+.-+...|.++++..++ ++.+.+ +++|....-    ......     ...|+|+=++-...+.
T Consensus         2 kIg~IG-~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~----~~~~~~-----~~~dvIilavkp~~~~   71 (152)
T d2ahra2           2 KIGIIG-VGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAM----SHQDLI-----DQVDLVILGIKPQLFE   71 (152)
T ss_dssp             EEEEEC-CSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCS----SHHHHH-----HTCSEEEECSCGGGHH
T ss_pred             EEEEEe-ccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeec----hhhhhh-----hccceeeeecchHhHH
Confidence            578999 9999999888777778899888865 555554 667754221    111112     2578999999766677


Q ss_pred             ccccCCCCCcEEEEeCC
Q 045248          147 TFEPNLGTNGKVIDITP  163 (240)
Q Consensus       147 ~~~~~l~~~G~iv~~g~  163 (240)
                      ..++.++++-.++.+..
T Consensus        72 ~vl~~l~~~~~iis~~a   88 (152)
T d2ahra2          72 TVLKPLHFKQPIISMAA   88 (152)
T ss_dssp             HHHTTSCCCSCEEECCT
T ss_pred             HHhhhcccceeEecccc
Confidence            88888888877776654

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.12  E-value=0.17  Score=36.63  Aligned_cols=33  Identities=21%  Similarity=0.272  Sum_probs=28.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHH-hCCCEEEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAK-LGNTHVTASCG   99 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~-~~g~~v~~~~~   99 (240)
                      .|.+|+|.| .|.+|..+++++. ..|++|+++..
T Consensus        31 ~g~~v~IqG-fGnVG~~~a~~L~~~~G~kvv~vsD   64 (239)
T d1gtma1          31 KGKTIAIQG-YGNAGYYLAKIMSEDFGMKVVAVSD   64 (239)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHhcCcceeeccc
Confidence            789999999 9999999998775 67999988874

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.10  E-value=0.032  Score=35.68  Aligned_cols=35  Identities=14%  Similarity=0.056  Sum_probs=31.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      +..++|+|+| +|.+|.-+++.++.+|.+|..+.+.
T Consensus        20 ~~p~~v~IiG-gG~iG~E~A~~l~~~g~~Vtlv~~~   54 (117)
T d1onfa2          20 KESKKIGIVG-SGYIAVELINVIKRLGIDSYIFARG   54 (117)
T ss_dssp             CCCSEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSS
T ss_pred             CCCCEEEEEC-CchHHHHHHHHHHhccccceeeehh
Confidence            4568999999 8999999999999999999999864

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.10  E-value=0.015  Score=34.38  Aligned_cols=32  Identities=19%  Similarity=0.088  Sum_probs=29.6

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ++|.|.| +|.+|.+.++-++.+|+++.+.+.+
T Consensus         2 k~vgIlG-~GQLgrMl~~Aa~~LG~~v~vldp~   33 (78)
T d3etja2           2 KQVCVLG-NGQLGRMLRQAGEPLGIAVWPVGLD   33 (78)
T ss_dssp             EEEEEEB-CSHHHHHHHHHHGGGTEEEEEECTT
T ss_pred             CEEEEEc-CCHHHHHHHHHHHHcCCEEEEEcCC
Confidence            5799999 8999999999999999999999964

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=95.07  E-value=0.014  Score=45.01  Aligned_cols=35  Identities=31%  Similarity=0.390  Sum_probs=32.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      +.++|+|+||+|.+|..++..+...|.+|++++++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~   36 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHS   36 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECC
Confidence            45899999999999999999999999999999974

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.06  E-value=0.015  Score=43.38  Aligned_cols=33  Identities=24%  Similarity=0.179  Sum_probs=29.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      +++|+|+| +|.-|+.+...++..|.+|.++...
T Consensus         1 ~KkV~IIG-aG~aGL~aA~~La~~G~~V~vlE~~   33 (373)
T d1seza1           1 AKRVAVIG-AGVSGLAAAYKLKIHGLNVTVFEAE   33 (373)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHhCCCCEEEEeCC
Confidence            57899999 8999999999999999999999854

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.05  E-value=0.012  Score=41.13  Aligned_cols=34  Identities=9%  Similarity=-0.033  Sum_probs=30.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~  100 (240)
                      .+++|+|+| +|+.|+.++..++..|+ .|.+..+.
T Consensus         3 ~~~kVaIIG-aGpaGl~aA~~l~~~G~~~V~v~E~~   37 (196)
T d1gtea4           3 YSAKIALLG-AGPASISCASFLARLGYSDITIFEKQ   37 (196)
T ss_dssp             GGCCEEEEC-CSHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             CCCEEEEEC-ChHHHHHHHHHHHHCCCCeEEEEEec
Confidence            568999999 89999999999999999 58888854

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=95.02  E-value=0.053  Score=37.07  Aligned_cols=96  Identities=9%  Similarity=0.067  Sum_probs=58.7

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-c---cHHHHHhc----CC-CEEEeCCCCc-------ccc-----ccC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA-R---NIEFVKSL----GA-DEVLDYKTPD-------GAA-----LKS  127 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~---~~~~~~~~----g~-~~v~~~~~~~-------~~~-----~~~  127 (240)
                      +|.|.| -|-+|.++.+.+...+.+++++-.+ .   ...++-++    |. ..-+...+..       ...     ..+
T Consensus         2 kIgING-fGRIGR~~~R~~~~~~~~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p~~   80 (169)
T d1dssg1           2 KIGING-FGRIGRLVLRAALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPEN   80 (169)
T ss_dssp             CEEEEC-CSHHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             eEEEEC-CcHHHHHHHHHHHhCCCcEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCChHH
Confidence            588999 9999999999888888888777642 3   34444332    21 0001111100       000     011


Q ss_pred             CC--CCcccEEEeCCCC-CCccccccCCCCCcEEEEeCCCc
Q 045248          128 PS--GRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus       128 ~~--~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~~~  165 (240)
                      ..  ..++|+|+||+|. .....+...++.+.+-|.+..+.
T Consensus        81 i~W~~~gvD~ViEcTG~f~~~~~~~~hl~~gakkViisaP~  121 (169)
T d1dssg1          81 IPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAPS  121 (169)
T ss_dssp             CCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCC
T ss_pred             CCccccCCCEEEecCceEcCHHHHHHHHhcCCceEeecCCc
Confidence            11  2479999999996 44777788888887666666543

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.99  E-value=0.016  Score=43.91  Aligned_cols=44  Identities=23%  Similarity=0.249  Sum_probs=35.1

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc---ccHHHHHhcCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA---RNIEFVKSLGA  111 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~g~  111 (240)
                      ++|||+||+|-+|..++..+...|++|+++++.   ...+.++.++.
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~~~l~~~~~   47 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGI   47 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccHHHHHHhcc
Confidence            589999999999999999888889999999852   34455555553

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.98  E-value=0.089  Score=38.01  Aligned_cols=33  Identities=24%  Similarity=0.341  Sum_probs=29.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHH-HhCCCEEEEEe
Q 045248           65 GQQKNILVTAASGGVGHYAVQLA-KLGNTHVTASC   98 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a-~~~g~~v~~~~   98 (240)
                      -++.+|.|.| .|.+|..+.+.+ +..|++|++++
T Consensus        29 l~g~~vaIqG-~GnVG~~~a~~L~~e~Ga~vv~vs   62 (234)
T d1b26a1          29 PKKATVAVQG-FGNVGQFAALLISQELGSKVVAVS   62 (234)
T ss_dssp             TTTCEEEEEC-CSHHHHHHHHHHHHHHCCEEEEEE
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHhcCCceEEee
Confidence            3789999999 999999999887 57899998876

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.98  E-value=0.027  Score=41.56  Aligned_cols=49  Identities=24%  Similarity=0.325  Sum_probs=37.3

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcc----cH----HHHHhcCCCEEEeC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGAR----NI----EFVKSLGADEVLDY  117 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~----~~----~~~~~~g~~~v~~~  117 (240)
                      +|||+||+|-+|..++..++..|.+|+++++.+    ..    +.+++...+.|++.
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D~~d~~~~~~~l~~~~~d~vih~   59 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVINC   59 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeechhccCCCHHHHHHHHHHcCCCEEEee
Confidence            699999999999999999999999999998531    12    23344556666653

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=94.97  E-value=0.049  Score=37.11  Aligned_cols=95  Identities=16%  Similarity=0.176  Sum_probs=57.0

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc---ccHHHHHhc----CC-CEEEeCCCCc---------------ccc
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNT-HVTASCGA---RNIEFVKSL----GA-DEVLDYKTPD---------------GAA  124 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~---~~~~~~~~~----g~-~~v~~~~~~~---------------~~~  124 (240)
                      +|.|.| -|-+|.++.+.+....- +++++-..   +.+.++-++    |. ..-+...+..               ...
T Consensus         3 kigING-FGRIGR~v~R~~~~~~~i~ivaINd~~~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~p~~   81 (166)
T d1gado1           3 KVGING-FGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPAN   81 (166)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             EEEEEC-CcHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCChHH
Confidence            578999 99999999998887754 88877753   334444322    21 0001111110               011


Q ss_pred             ccCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEeCCCc
Q 045248          125 LKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus       125 ~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~~~  165 (240)
                      +.+ ...++|+|+||+|. .+...+...++.+.+-|.+..+.
T Consensus        82 i~W-~~~gvDiViEcTG~f~t~~~~~~hl~~gakkViiSaP~  122 (166)
T d1gado1          82 LKW-DEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPS  122 (166)
T ss_dssp             GCH-HHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC
T ss_pred             CCc-cccCCCEEEEccccccCHHHHHHHhcCCCceEEeeccc
Confidence            111 12479999999996 44667777888887666666443

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=94.96  E-value=0.15  Score=34.69  Aligned_cols=95  Identities=13%  Similarity=0.110  Sum_probs=56.9

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCC-CEEEEEeCc-c---cHHHHHhc----C---CCEEEeCC-------------CCccc
Q 045248           69 NILVTAASGGVGHYAVQLAKLGN-THVTASCGA-R---NIEFVKSL----G---ADEVLDYK-------------TPDGA  123 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g-~~v~~~~~~-~---~~~~~~~~----g---~~~v~~~~-------------~~~~~  123 (240)
                      +|.|.| -|-+|.++.+.+-..+ .+++++-.+ .   ...++-++    |   .+--++..             ..+..
T Consensus         3 kIgING-FGRIGR~v~R~~~~~~~~~ivaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~p~   81 (169)
T d1u8fo1           3 KVGVNG-FGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPS   81 (169)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             EEEEEC-CcHHHHHHHHHHHHCCCcEEEEecCCCccHHHHHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEECCChh
Confidence            688999 9999999998777554 588877642 3   34444332    1   11111100             00011


Q ss_pred             cccCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEeCCCc
Q 045248          124 ALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus       124 ~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~~~  165 (240)
                      .+.+ ...++|+|+||+|. .....+...+..+.+-|.+..+.
T Consensus        82 ~i~W-~~~~vDiViEcTG~f~~~~~~~~hl~~gakkViiSaP~  123 (169)
T d1u8fo1          82 KIKW-GDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPS  123 (169)
T ss_dssp             GCCT-TTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCC
T ss_pred             hCCc-cccCCCEEEEecceeccHHHHHHHHhcCCceEeecccc
Confidence            1111 23579999999997 44667777788887666666443

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=94.94  E-value=0.012  Score=44.13  Aligned_cols=35  Identities=11%  Similarity=0.149  Sum_probs=30.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      +..+|||+||+|-+|..++..+...|.+|+++.++
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~   36 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRP   36 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            34669999999999999999888899999998863

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=94.89  E-value=0.022  Score=38.26  Aligned_cols=94  Identities=11%  Similarity=0.136  Sum_probs=63.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCC--CEEEEEeCcc----cHHHHHhcCCCEEEeCCCCccc------------------
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGN--THVTASCGAR----NIEFVKSLGADEVLDYKTPDGA------------------  123 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g--~~v~~~~~~~----~~~~~~~~g~~~v~~~~~~~~~------------------  123 (240)
                      ++|.|.|++|.+|..++.+.+.+.  ++|++.+-..    -.+.++++.+..++-.++....                  
T Consensus         2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~~~~~~l~~~l~~~~~~~~~~~g   81 (151)
T d1q0qa2           2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSG   81 (151)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHTTCCCEEEES
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHHHHHHHHHHHhhcccccccHHHHHHHHHHhhhhccccccccC
Confidence            478999999999999999999874  5888877322    2455678888777654332110                  


Q ss_pred             ---cccCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEe
Q 045248          124 ---ALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       124 ---~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~  161 (240)
                         ..+......+|+|+..+.+ ..+...+..++.+=++.+.
T Consensus        82 ~~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik~gk~iaLA  123 (151)
T d1q0qa2          82 QQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTILLA  123 (151)
T ss_dssp             HHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHTTCEEEEC
T ss_pred             hHHHHHHhcCCCCCEEEEecCcccHHHHHHHHHhcCCeEEEE
Confidence               0011233468999998876 4477788888777665544

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.88  E-value=0.029  Score=43.06  Aligned_cols=32  Identities=22%  Similarity=0.176  Sum_probs=28.8

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      +.|||+||+|=+|..++..+...|.+|+++++
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~   33 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADN   33 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEEC
Confidence            57999999999999999988889999999864

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=94.88  E-value=0.01  Score=45.51  Aligned_cols=74  Identities=11%  Similarity=-0.021  Sum_probs=43.3

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCC-CEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGN-THVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g-~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      +|||+||+|-+|..+++.+...| .+|++++.. .+.....+..--..+..+-.+.....+....++|+|+.+++-
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~~   77 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAI   77 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCcccccccc
Confidence            69999999999999998887788 599998753 333222221111222221111111111112469999998874

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=94.84  E-value=0.029  Score=39.53  Aligned_cols=86  Identities=13%  Similarity=0.103  Sum_probs=55.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC--C
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG--I  143 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~--~  143 (240)
                      .|++|.|+| .|.+|..++++++.+|++|++.++..+..... .+.    ...+. ...+     ...|+++-++..  +
T Consensus        42 ~gk~vgIiG-~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~~-~~~----~~~~l-~~~l-----~~sDii~~~~plt~~  109 (197)
T d1j4aa1          42 RDQVVGVVG-TGHIGQVFMQIMEGFGAKVITYDIFRNPELEK-KGY----YVDSL-DDLY-----KQADVISLHVPDVPA  109 (197)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCHHHHH-TTC----BCSCH-HHHH-----HHCSEEEECSCCCGG
T ss_pred             cCCeEEEec-ccccchhHHHhHhhhcccccccCccccccccc-cee----eeccc-cccc-----cccccccccCCcccc
Confidence            589999999 99999999999999999999988653332221 121    11110 1111     236788777652  1


Q ss_pred             C----ccccccCCCCCcEEEEeCC
Q 045248          144 P----WSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       144 ~----~~~~~~~l~~~G~iv~~g~  163 (240)
                      +    -...++.++++..++.++-
T Consensus       110 T~~li~~~~l~~mk~~a~lIN~sR  133 (197)
T d1j4aa1         110 NVHMINDESIAKMKQDVVIVNVSR  133 (197)
T ss_dssp             GTTCBSHHHHHHSCTTEEEEECSC
T ss_pred             ccccccHHHHhhhCCccEEEecCc
Confidence            1    2345667778877777654

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.81  E-value=0.063  Score=34.54  Aligned_cols=35  Identities=23%  Similarity=0.155  Sum_probs=31.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      +.+++|+|+| +|.+|+-+++.+..+|.+|..+.+.
T Consensus        28 ~~~k~vvViG-gG~iG~E~A~~l~~~g~~Vtlie~~   62 (123)
T d1nhpa2          28 PEVNNVVVIG-SGYIGIEAAEAFAKAGKKVTVIDIL   62 (123)
T ss_dssp             TTCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCEEEEEC-ChHHHHHHHHHhhccceEEEEEEec
Confidence            5678999999 8999999999999999999998753

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=94.81  E-value=0.02  Score=40.26  Aligned_cols=88  Identities=15%  Similarity=0.012  Sum_probs=57.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC--C
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG--I  143 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~--~  143 (240)
                      .|+++.|+| .|.+|...+++++.+|++|+..++....+.....+....   .+. ...+     ...|+|.-++..  +
T Consensus        48 ~gktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~---~~l-~~ll-----~~sD~i~~~~plt~~  117 (193)
T d1mx3a1          48 RGETLGIIG-LGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRV---STL-QDLL-----FHSDCVTLHCGLNEH  117 (193)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEEC---SSH-HHHH-----HHCSEEEECCCCCTT
T ss_pred             eCceEEEec-cccccccceeeeeccccceeeccCcccccchhhhccccc---cch-hhcc-----ccCCEEEEeeccccc
Confidence            688999999 999999999999999999999986533333333332211   110 1111     125677666652  2


Q ss_pred             C----ccccccCCCCCcEEEEeCC
Q 045248          144 P----WSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       144 ~----~~~~~~~l~~~G~iv~~g~  163 (240)
                      +    -...++.++++..++.++-
T Consensus       118 T~~li~~~~l~~mk~~a~lIN~sR  141 (193)
T d1mx3a1         118 NHHLINDFTVKQMRQGAFLVNTAR  141 (193)
T ss_dssp             CTTSBSHHHHTTSCTTEEEEECSC
T ss_pred             chhhhhHHHHhccCCCCeEEecCC
Confidence            2    2245678888888887764

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=94.80  E-value=0.024  Score=41.39  Aligned_cols=33  Identities=15%  Similarity=0.060  Sum_probs=30.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      ..++|+|+| +|+.|+.+...+...|.+|+++.+
T Consensus         3 ~~~kV~IiG-aG~aGl~~A~~L~~~G~~v~v~Er   35 (265)
T d2voua1           3 TTDRIAVVG-GSISGLTAALMLRDAGVDVDVYER   35 (265)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCcEEEEC-cCHHHHHHHHHHHHCCCCEEEEeC
Confidence            568899999 899999999999999999999985

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.79  E-value=0.057  Score=34.48  Aligned_cols=35  Identities=3%  Similarity=-0.085  Sum_probs=31.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .++++++|+| +|.+|+-....+..+|.+|..+.+.
T Consensus        20 ~~~~~vvVvG-gG~ig~E~A~~l~~~g~~vt~i~~~   54 (121)
T d1mo9a2          20 EPGSTVVVVG-GSKTAVEYGCFFNATGRRTVMLVRT   54 (121)
T ss_dssp             CCCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHhcchhheEeecc
Confidence            6789999999 8999999999999999999988853

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=94.74  E-value=0.022  Score=43.03  Aligned_cols=35  Identities=17%  Similarity=0.209  Sum_probs=30.9

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ...++|+|+| +|..|+.+...++..|.+|.++...
T Consensus        28 ~~pkkV~IIG-aG~aGLsaA~~L~~~G~~V~vlE~~   62 (370)
T d2iida1          28 SNPKHVVIVG-AGMAGLSAAYVLAGAGHQVTVLEAS   62 (370)
T ss_dssp             SSCCEEEEEC-CBHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCCCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEeCC
Confidence            4567999999 8999999998888889999999854

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.66  E-value=0.041  Score=35.07  Aligned_cols=34  Identities=26%  Similarity=0.140  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ..++++|+| +|.+|+-+++.+..+|.+|..+.+.
T Consensus        21 ~p~~v~IiG-gG~ig~E~A~~l~~~G~~Vtlve~~   54 (117)
T d1ebda2          21 VPKSLVVIG-GGYIGIELGTAYANFGTKVTILEGA   54 (117)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCeEEEEC-CCccceeeeeeecccccEEEEEEec
Confidence            347899999 8999999999999999999999854

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.64  E-value=0.0077  Score=46.04  Aligned_cols=91  Identities=18%  Similarity=0.111  Sum_probs=49.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCcccHHHH----HhcCCCEEEeCCCCccccccCCCCCcccEEEeC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGARNIEFV----KSLGADEVLDYKTPDGAALKSPSGRKYDAVIHC  139 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~~~~~~~----~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~  139 (240)
                      .+|++||-+| +| .|.+.+.+|+ .|+ +|++++.+.....+    +..+....+..-..+...+ ......+|+|+..
T Consensus        32 ~~~~~VLDiG-cG-~G~ls~~aa~-~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~-~~~~~~~D~ivs~  107 (316)
T d1oria_          32 FKDKVVLDVG-SG-TGILCMFAAK-AGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEV-ELPVEKVDIIISE  107 (316)
T ss_dssp             HTTCEEEEET-CT-TSHHHHHHHH-TTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSSCEEEEEEC
T ss_pred             CCcCEEEEEe-cC-CcHHHHHHHH-hCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHc-ccccceeEEEeee
Confidence            5889999998 45 3666665555 676 89999965433333    3344321111111111111 1234679998753


Q ss_pred             C-CC----C-Ccc----ccccCCCCCcEEE
Q 045248          140 A-TG----I-PWS----TFEPNLGTNGKVI  159 (240)
Q Consensus       140 ~-g~----~-~~~----~~~~~l~~~G~iv  159 (240)
                      . +.    + .+.    ..-+.|+|+|+++
T Consensus       108 ~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         108 WMGYCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             CCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence            3 21    1 122    2346899999886

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=94.62  E-value=0.12  Score=35.31  Aligned_cols=94  Identities=14%  Similarity=0.128  Sum_probs=54.8

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCC-CEEEEEeCc---ccHHHHHhcCC-----CEEEeCCCC---------------cccc
Q 045248           69 NILVTAASGGVGHYAVQLAKLGN-THVTASCGA---RNIEFVKSLGA-----DEVLDYKTP---------------DGAA  124 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g-~~v~~~~~~---~~~~~~~~~g~-----~~v~~~~~~---------------~~~~  124 (240)
                      +|.|.| -|-+|.++.+.+-... .+++++-..   +...++-++-.     ..-+...+.               +...
T Consensus         3 kIgING-fGRIGR~v~R~~l~~~~~~ivaINd~~d~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~p~~   81 (171)
T d3cmco1           3 KVGING-FGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPEN   81 (171)
T ss_dssp             EEEEES-CSHHHHHHHHHHTTCTTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             EEEEEC-CCHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHhhhhcccccCCcccccccccCCCEEeCCcceeeEecCCHHH
Confidence            578999 9999999998887554 477777643   33444432211     000101110               0011


Q ss_pred             ccCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEeCCC
Q 045248          125 LKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       125 ~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      +.+ ...++|+|+||+|. .+...+...+..+-+-|.+..+
T Consensus        82 i~W-~~~~vDiViEcTG~f~t~~~~~~hl~~gakkViiSap  121 (171)
T d3cmco1          82 LAW-GEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAP  121 (171)
T ss_dssp             CCT-GGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred             ccc-cccCCcEEEEecCccCCHHHHHHHHhCCCceEEEecc
Confidence            111 12469999999997 4466777778877655555543

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=94.59  E-value=0.045  Score=38.20  Aligned_cols=88  Identities=10%  Similarity=-0.026  Sum_probs=58.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC--
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG--  142 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~--  142 (240)
                      .+.++.|+| .|.+|...+++++.+|.+|+..++. ......+..+...   ..+. ...+     ...|+|.-++.-  
T Consensus        43 ~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~---~~~l-~~~l-----~~sD~v~~~~plt~  112 (188)
T d2naca1          43 EAMHVGTVA-AGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTW---HATR-EDMY-----PVCDVVTLNCPLHP  112 (188)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEE---CSSH-HHHG-----GGCSEEEECSCCCT
T ss_pred             cccceeecc-ccccchhhhhhhhccCceEEEEeeccccccccccccccc---cCCH-HHHH-----Hhccchhhcccccc
Confidence            688999999 9999999999999999999999974 4444444444221   1110 1111     236777666642  


Q ss_pred             CC----ccccccCCCCCcEEEEeCC
Q 045248          143 IP----WSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       143 ~~----~~~~~~~l~~~G~iv~~g~  163 (240)
                      ++    -...++.++++..++.++-
T Consensus       113 ~T~~li~~~~l~~mk~ga~lIN~aR  137 (188)
T d2naca1         113 ETEHMINDETLKLFKRGAYIVNTAR  137 (188)
T ss_dssp             TTTTCBSHHHHTTSCTTEEEEECSC
T ss_pred             cchhhhHHHHHHhCCCCCEEEecCc
Confidence            11    2356677888877777654

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.52  E-value=0.18  Score=30.35  Aligned_cols=65  Identities=17%  Similarity=0.171  Sum_probs=45.0

Q ss_pred             CeEEEEcCCchHHHH-HHHHHHhCCCEEEEEeCc--ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCC
Q 045248           68 KNILVTAASGGVGHY-AVQLAKLGNTHVTASCGA--RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCAT  141 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~-~~~~a~~~g~~v~~~~~~--~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g  141 (240)
                      .+|-++| -||+|.. ++++++..|+.|.+.+..  +..+.++++|..-......   ..+     .+.|+|+-+..
T Consensus         2 ~~ihfiG-IgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~---~~i-----~~~d~vV~SsA   69 (89)
T d1j6ua1           2 MKIHFVG-IGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSA---DNW-----YDPDLVIKTPA   69 (89)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCT---TSC-----CCCSEEEECTT
T ss_pred             cEEEEEe-ECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecc---ccc-----CCCCEEEEecC
Confidence            3677888 8889975 569999999999999953  5677889999753222211   111     34777776654

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.48  E-value=0.42  Score=32.47  Aligned_cols=99  Identities=17%  Similarity=0.071  Sum_probs=60.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHh----cCCCEEEeCCCCccccccCCCCCcccEEEeCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKS----LGADEVLDYKTPDGAALKSPSGRKYDAVIHCA  140 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~  140 (240)
                      -.|++++|+|-+.-+|.=+..++...|+.|..+.+....++-+.    .-...+-+........++ ..-...|+++-.+
T Consensus        27 l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk-~~~~~aDIvIsav  105 (171)
T d1edza1          27 LYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLK-KCSLDSDVVITGV  105 (171)
T ss_dssp             TTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHH-HHHHHCSEEEECC
T ss_pred             CCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHh-hccccCCEEEEcc
Confidence            37999999997778899988999999999876654311110000    000111110000000000 0012489999999


Q ss_pred             CCCCccccccCCCCCcEEEEeCCC
Q 045248          141 TGIPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       141 g~~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      |.+.+.---+.+++|..++.+|..
T Consensus       106 G~p~~~i~~d~ik~GavvIDvGi~  129 (171)
T d1edza1         106 PSENYKFPTEYIKEGAVCINFACT  129 (171)
T ss_dssp             CCTTCCBCTTTSCTTEEEEECSSS
T ss_pred             CCCccccChhhcccCceEeecccc
Confidence            987765566789999999999854

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=94.46  E-value=0.019  Score=42.70  Aligned_cols=33  Identities=15%  Similarity=0.101  Sum_probs=30.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      .++|||+||+|-+|..++..+...|.+|+++++
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R   35 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVR   35 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEEC
Confidence            478999999999999999999989999999986

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=94.41  E-value=0.034  Score=42.50  Aligned_cols=74  Identities=20%  Similarity=0.222  Sum_probs=45.3

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeC---c--ccHHHHHhcCC--CEEEeCCCCccccc-cCCCCCcccEEEeCC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCG---A--RNIEFVKSLGA--DEVLDYKTPDGAAL-KSPSGRKYDAVIHCA  140 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~---~--~~~~~~~~~g~--~~v~~~~~~~~~~~-~~~~~~~~d~v~d~~  140 (240)
                      +|||+||+|-+|..++..+...|.+|+++++   .  +.....+....  -..+..+-.+...+ +.....++|+||.++
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViHlA   81 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFA   81 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEECC
Confidence            5999999999999999999989999999874   1  12232222221  12222221121111 112234799999988


Q ss_pred             CC
Q 045248          141 TG  142 (240)
Q Consensus       141 g~  142 (240)
                      +.
T Consensus        82 a~   83 (338)
T d1udca_          82 GL   83 (338)
T ss_dssp             SC
T ss_pred             Cc
Confidence            63

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.39  E-value=0.074  Score=33.96  Aligned_cols=34  Identities=15%  Similarity=-0.015  Sum_probs=30.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ..++++|+| +|.+|+-+.+.+..+|.+|..+.+.
T Consensus        21 ~p~~i~IiG-~G~ig~E~A~~l~~~G~~Vtiv~~~   54 (119)
T d3lada2          21 VPGKLGVIG-AGVIGLELGSVWARLGAEVTVLEAM   54 (119)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCeEEEEC-CChHHHHHHHHHHHcCCceEEEEee
Confidence            448899999 8999999999999999999988854

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=94.37  E-value=0.04  Score=38.60  Aligned_cols=88  Identities=11%  Similarity=-0.037  Sum_probs=57.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC--
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG--  142 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~--  142 (240)
                      .|+++.|+| .|.+|....++++.+|.+|+..++. .........+..   ...+. ...+     ...|+|.-++.-  
T Consensus        46 ~g~tvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~---~~~~l-~~ll-----~~sD~v~l~~plt~  115 (191)
T d1gdha1          46 DNKTLGIYG-FGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQAT---FHDSL-DSLL-----SVSQFFSLNAPSTP  115 (191)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCE---ECSSH-HHHH-----HHCSEEEECCCCCT
T ss_pred             cccceEEee-cccchHHHHHHHHhhccccccccccccccchhhccccc---ccCCH-HHHH-----hhCCeEEecCCCCc
Confidence            479999999 9999999999999999999998864 333322222211   11110 1111     235777776642  


Q ss_pred             CC----ccccccCCCCCcEEEEeCC
Q 045248          143 IP----WSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       143 ~~----~~~~~~~l~~~G~iv~~g~  163 (240)
                      ++    =...++.++++..+|.++-
T Consensus       116 ~T~~li~~~~l~~mk~~a~lIN~sR  140 (191)
T d1gdha1         116 ETRYFFNKATIKSLPQGAIVVNTAR  140 (191)
T ss_dssp             TTTTCBSHHHHTTSCTTEEEEECSC
T ss_pred             hHhheecHHHhhCcCCccEEEecCC
Confidence            21    2256778888888887764

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.37  E-value=0.095  Score=37.67  Aligned_cols=99  Identities=10%  Similarity=-0.022  Sum_probs=61.1

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC--EEEEEeC-cccHHHHHh----cCCCEEEeCCCCccccccC
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT--HVTASCG-ARNIEFVKS----LGADEVLDYKTPDGAALKS  127 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~~-~~~~~~~~~----~g~~~v~~~~~~~~~~~~~  127 (240)
                      +..++     +||++||=.|+  |.|..+..+++..|-  +|++++- ++..+.+++    .+....+..+.........
T Consensus        67 ~~l~i-----~pG~~VLDlGa--GsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~  139 (227)
T d1g8aa_          67 KNFPI-----KPGKSVLYLGI--ASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRA  139 (227)
T ss_dssp             CCCCC-----CTTCEEEEETT--TSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTT
T ss_pred             ccccc-----CCCCEEEEecc--CCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccc
Confidence            45566     89999999883  457778888988763  9999995 455555543    2322222222221111111


Q ss_pred             CCCCcccEEEeCCCCC-----CccccccCCCCCcEEEEe
Q 045248          128 PSGRKYDAVIHCATGI-----PWSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       128 ~~~~~~d~v~d~~g~~-----~~~~~~~~l~~~G~iv~~  161 (240)
                       ....+|+++-.+...     .+..+.+.|+++|+++.+
T Consensus       140 -~~~~vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~  177 (227)
T d1g8aa_         140 -LVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             -TCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -cccceEEEEEEccccchHHHHHHHHHHhcccCCeEEEE
Confidence             124688887655422     266677889999988765

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.36  E-value=0.042  Score=39.57  Aligned_cols=35  Identities=17%  Similarity=0.216  Sum_probs=31.9

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      +..++|+|+| +|+.|+.+...+..+|.+|..+...
T Consensus        47 ~~~k~VvIIG-aGpAGl~aA~~l~~~G~~v~l~E~~   81 (233)
T d1djqa3          47 KNKDSVLIVG-AGPSGSEAARVLMESGYTVHLTDTA   81 (233)
T ss_dssp             SSCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cCCceEEEEc-ccHHHHHHHHHHHHhccceeeEeec
Confidence            5789999999 8999999999999999999999854

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.30  E-value=0.028  Score=42.63  Aligned_cols=96  Identities=16%  Similarity=0.131  Sum_probs=53.0

Q ss_pred             HHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCcccHH----HHHhcCCC---EEEeCCCCccc
Q 045248           52 ALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGARNIE----FVKSLGAD---EVLDYKTPDGA  123 (240)
Q Consensus        52 ~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~~~~~----~~~~~g~~---~v~~~~~~~~~  123 (240)
                      ++.+...+     .++++||-+| +| .|..++.+|+ .|+ +|++++.++...    ..++.+..   .++..+.   .
T Consensus        26 ai~~~~~~-----~~~~~VLDiG-cG-~G~lsl~aa~-~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~---~   94 (311)
T d2fyta1          26 FIYQNPHI-----FKDKVVLDVG-CG-TGILSMFAAK-AGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKI---E   94 (311)
T ss_dssp             HHHHCGGG-----TTTCEEEEET-CT-TSHHHHHHHH-TTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCT---T
T ss_pred             HHHhcccc-----CCcCEEEEEC-CC-CCHHHHHHHH-cCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeH---H
Confidence            45444444     6889999998 55 6666665555 576 899999654332    22344422   2222111   1


Q ss_pred             cccCCCCCcccEEEeC-CC----CCC-ccc----cccCCCCCcEEE
Q 045248          124 ALKSPSGRKYDAVIHC-AT----GIP-WST----FEPNLGTNGKVI  159 (240)
Q Consensus       124 ~~~~~~~~~~d~v~d~-~g----~~~-~~~----~~~~l~~~G~iv  159 (240)
                      .+. .....+|+|+-- .+    .+. +..    .-+.|+|+|+++
T Consensus        95 ~l~-~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1          95 EVH-LPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             TSC-CSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             Hhc-CccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence            111 234679999752 22    222 222    234699999886

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.25  E-value=0.15  Score=36.60  Aligned_cols=100  Identities=12%  Similarity=-0.018  Sum_probs=59.6

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCC-CEEEEEeC-cccHHHHHhc----CCCEEEeCCCCccccccCC
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGN-THVTASCG-ARNIEFVKSL----GADEVLDYKTPDGAALKSP  128 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g-~~v~~~~~-~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~  128 (240)
                      +..++     ++|++||=+|+  |.|..+..+++... .+|++++- ++..+.+++.    +....+............ 
T Consensus        68 ~~l~i-----kpG~~VLDlGc--GsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~-  139 (230)
T d1g8sa_          68 KVMPI-----KRDSKILYLGA--SAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYAN-  139 (230)
T ss_dssp             CCCCC-----CTTCEEEEESC--CSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTT-
T ss_pred             HhCCC-----CCCCEEEEeCE--EcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCccccc-
Confidence            45566     89999999984  34666777777654 49999995 4666666543    222222222221111111 


Q ss_pred             CCCcccEEEeCCCCCC-----ccccccCCCCCcEEEEeC
Q 045248          129 SGRKYDAVIHCATGIP-----WSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       129 ~~~~~d~v~d~~g~~~-----~~~~~~~l~~~G~iv~~g  162 (240)
                      ....+|+++.......     +..+.+.|+++|+++..-
T Consensus       140 ~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~  178 (230)
T d1g8sa_         140 IVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAI  178 (230)
T ss_dssp             TCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEe
Confidence            2234677776665321     566777899999987653

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=94.24  E-value=0.022  Score=42.25  Aligned_cols=93  Identities=17%  Similarity=0.093  Sum_probs=61.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhC-CCEEEEEeCc-ccHHHHHhcCCC-EEEeCCCCccccccCCCCCcccEEEeCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLG-NTHVTASCGA-RNIEFVKSLGAD-EVLDYKTPDGAALKSPSGRKYDAVIHCAT  141 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~-g~~v~~~~~~-~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~~~~d~v~d~~g  141 (240)
                      .++.+||=+|  .|.|..+..+++.. +.++++++-+ ...+.+++.... ..+..+..   .+ ......||+|+..-.
T Consensus        83 ~~~~~iLDiG--cG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~---~l-~~~~~sfD~v~~~~~  156 (268)
T d1p91a_          83 DKATAVLDIG--CGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSH---RL-PFSDTSMDAIIRIYA  156 (268)
T ss_dssp             TTCCEEEEET--CTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTT---SC-SBCTTCEEEEEEESC
T ss_pred             CCCCEEEEeC--CCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehh---hc-cCCCCCEEEEeecCC
Confidence            5677888887  34566677777765 5699999954 666777654432 22211111   11 112356999997666


Q ss_pred             CCCccccccCCCCCcEEEEeCC
Q 045248          142 GIPWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       142 ~~~~~~~~~~l~~~G~iv~~g~  163 (240)
                      ...+.++.+.|+|+|.++...+
T Consensus       157 ~~~~~e~~rvLkpgG~l~~~~p  178 (268)
T d1p91a_         157 PCKAEELARVVKPGGWVITATP  178 (268)
T ss_dssp             CCCHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHhCCCcEEEEEee
Confidence            5668889999999999887754

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=94.20  E-value=0.11  Score=37.46  Aligned_cols=46  Identities=13%  Similarity=0.112  Sum_probs=37.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcCCC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLGAD  112 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~  112 (240)
                      .|.+|+|.| .|.+|..+++++...|+++++++.+ .+.+.+ ...|..
T Consensus        38 ~g~~v~IqG-~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~   85 (230)
T d1leha1          38 EGLAVSVQG-LGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGAD   85 (230)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCc
Confidence            789999999 9999999999999999999988854 555444 455553

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=94.18  E-value=0.032  Score=39.42  Aligned_cols=34  Identities=26%  Similarity=0.221  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .+++|.|+| .|.+|..++++++.+|++|++.++.
T Consensus        44 ~~ktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~   77 (199)
T d1dxya1          44 GQQTVGVMG-TGHIGQVAIKLFKGFGAKVIAYDPY   77 (199)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cceeeeeee-cccccccccccccccceeeeccCCc
Confidence            578999999 9999999999999999999999863

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=94.17  E-value=0.19  Score=33.91  Aligned_cols=131  Identities=10%  Similarity=-0.052  Sum_probs=72.5

Q ss_pred             eEEEEcCCchHHHH-HHHHHHhCC-CEEEEEeCc-cc-HHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC
Q 045248           69 NILVTAASGGVGHY-AVQLAKLGN-THVTASCGA-RN-IEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP  144 (240)
Q Consensus        69 ~vlV~G~~g~vG~~-~~~~a~~~g-~~v~~~~~~-~~-~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~  144 (240)
                      +|.|+| +|.+|.. ....++..+ ..+++++++ ++ .+.+++++...+++  +.. ..++    ..+|+|+-++....
T Consensus         3 rvgiiG-~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--~~~-~ll~----~~iD~V~I~tp~~~   74 (167)
T d1xeaa1           3 KIAMIG-LGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCT--DYR-DVLQ----YGVDAVMIHAATDV   74 (167)
T ss_dssp             EEEEEC-CCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCS--STT-GGGG----GCCSEEEECSCGGG
T ss_pred             EEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccc--cHH-Hhcc----cccceecccccccc
Confidence            688999 8999964 566666554 476644443 44 44446777654432  111 1121    35999999888755


Q ss_pred             -ccccccCCCCCcEEEEeCCCch---HHHHHHHhhheeccceeeeEEEcCCHHHHHHHHHHHHCCceEE
Q 045248          145 -WSTFEPNLGTNGKVIDITPGPS---AMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKT  209 (240)
Q Consensus       145 -~~~~~~~l~~~G~iv~~g~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~  209 (240)
                       ...+..+++.| +=|.+..+-.   ............++..+...+ ......+.++.+.+..|++-.
T Consensus        75 H~~~~~~al~~g-k~V~~EKP~~~~~~e~~~l~~~a~~~~~~~~vg~-~r~~~~~~~~~~~~~~G~ig~  141 (167)
T d1xeaa1          75 HSTLAAFFLHLG-IPTFVDKPLAASAQECENLYELAEKHHQPLYVGF-NGFDAMVQDWLQVAAAGKLPT  141 (167)
T ss_dssp             HHHHHHHHHHTT-CCEEEESCSCSSHHHHHHHHHHHHHTTCCEEEEC-GTHHHHHHHHHHHHHHTCCCH
T ss_pred             cccccccccccc-cccccCCCCcCCHHHHHHHHHHHHHcCCEEEEEe-CcCCHHHHHHHHHhhcCCCCc
Confidence             66677777765 4455553321   111111222222333332222 233445778888888888753

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.07  E-value=0.05  Score=34.62  Aligned_cols=33  Identities=9%  Similarity=-0.080  Sum_probs=29.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .++++|+| +|.+|+-+++.++.+|.+|..+.+.
T Consensus        21 p~~vvIiG-gG~ig~E~A~~l~~~G~~Vtlve~~   53 (116)
T d1gesa2          21 PERVAVVG-AGYIGVELGGVINGLGAKTHLFEMF   53 (116)
T ss_dssp             CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCEEEEEC-CChhhHHHHHHhhccccEEEEEeec
Confidence            37899999 8999999999999999999988853

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=94.04  E-value=0.064  Score=36.83  Aligned_cols=95  Identities=13%  Similarity=0.154  Sum_probs=55.1

Q ss_pred             eEEEEcCCchHHHHHHHHHHhC----CCEEEEEeCc---ccHHHHHhcC-------CCEEEeC-------------CCCc
Q 045248           69 NILVTAASGGVGHYAVQLAKLG----NTHVTASCGA---RNIEFVKSLG-------ADEVLDY-------------KTPD  121 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~----g~~v~~~~~~---~~~~~~~~~g-------~~~v~~~-------------~~~~  121 (240)
                      +|.|.| -|-+|.++.+.+-..    ..+|+++-..   +...++-++-       ...-.+.             ...+
T Consensus         3 kigING-fGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~   81 (173)
T d1obfo1           3 RVAING-YGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDANRN   81 (173)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSC
T ss_pred             EEEEEC-CcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEEecCC
Confidence            588999 999999999876543    2366666643   2344443221       1100000             0000


Q ss_pred             cccccCCCCCcccEEEeCCCC-CCccccccCCCCCcEEEEeCCCc
Q 045248          122 GAALKSPSGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITPGP  165 (240)
Q Consensus       122 ~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~~~  165 (240)
                      ...+.+ ...++|+|+||+|. .....+.+.|..+.+-|.+..+.
T Consensus        82 p~~i~W-~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~  125 (173)
T d1obfo1          82 PAQLPW-GALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPG  125 (173)
T ss_dssp             GGGSCT-TTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCC
T ss_pred             HHHCcc-cccccceEEEecccccCHHHHHHHhccCCcceEEecCC
Confidence            111111 23579999999996 44667777888887766666543

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.98  E-value=0.047  Score=35.09  Aligned_cols=35  Identities=11%  Similarity=0.060  Sum_probs=30.9

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      +.+++++|+| +|.+|+-+++.+...|.+|..+.+.
T Consensus        30 ~~~~~vvIiG-gG~iG~E~A~~l~~~g~~Vtlv~~~   64 (122)
T d1xhca2          30 ENSGEAIIIG-GGFIGLELAGNLAEAGYHVKLIHRG   64 (122)
T ss_dssp             HHHSEEEEEE-CSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             hcCCcEEEEC-CcHHHHHHHHHhhcccceEEEEecc
Confidence            4558899999 8999999999999999999988854

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.98  E-value=0.11  Score=35.56  Aligned_cols=90  Identities=16%  Similarity=0.156  Sum_probs=51.8

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH-HhcC----CCE--EEeCCCCccccccCCCCCcccEEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV-KSLG----ADE--VLDYKTPDGAALKSPSGRKYDAVI  137 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g----~~~--v~~~~~~~~~~~~~~~~~~~d~v~  137 (240)
                      ++++|||.| +||.+.+++..+...| +|....|+ ++.+.+ .++.    ...  .++..+     . ...-..+|+++
T Consensus        17 ~~k~vlIlG-aGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~dliI   88 (177)
T d1nvta1          17 KDKNIVIYG-AGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSG-----L-DVDLDGVDIII   88 (177)
T ss_dssp             CSCEEEEEC-CSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEEC-----T-TCCCTTCCEEE
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhh-----h-hhccchhhhhc
Confidence            889999999 8999998887776555 88877775 555443 2221    110  011111     0 01124589999


Q ss_pred             eCCCCCC---cc----ccccCCCCCcEEEEeCC
Q 045248          138 HCATGIP---WS----TFEPNLGTNGKVIDITP  163 (240)
Q Consensus       138 d~~g~~~---~~----~~~~~l~~~G~iv~~g~  163 (240)
                      +|+....   ..    .-...+.++..++.+..
T Consensus        89 n~tp~g~~~~~~~~~~~~~~~~~~~~~v~D~~y  121 (177)
T d1nvta1          89 NATPIGMYPNIDVEPIVKAEKLREDMVVMDLIY  121 (177)
T ss_dssp             ECSCTTCTTCCSSCCSSCSTTCCSSSEEEECCC
T ss_pred             cCCcccccccccccchhhhhccCcccceeeecC
Confidence            9986321   11    12234556666666654

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.98  E-value=0.096  Score=37.12  Aligned_cols=95  Identities=17%  Similarity=0.062  Sum_probs=56.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeC-cccHHHH----HhcCCCEEEeCCCCccccccCCCCCcccEEEe
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCG-ARNIEFV----KSLGADEVLDYKTPDGAALKSPSGRKYDAVIH  138 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~-~~~~~~~----~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d  138 (240)
                      +||++||=.|+ | .|..+..+++..+. +|++++- ++..+.+    ++.+-...+..+..+.. ........+|+++.
T Consensus        55 kpg~~VLDlGc-G-~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~-~~~~~~~~vd~v~~  131 (209)
T d1nt2a_          55 RGDERVLYLGA-A-SGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPW-KYSGIVEKVDLIYQ  131 (209)
T ss_dssp             CSSCEEEEETC-T-TSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGG-GTTTTCCCEEEEEE
T ss_pred             CCCCEEEEeCC-c-CCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCcc-ccccccceEEEEEe
Confidence            89999999984 3 35567777877764 9999994 4555554    34442222222111111 11112245788876


Q ss_pred             CCCCC-----CccccccCCCCCcEEEEeC
Q 045248          139 CATGI-----PWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       139 ~~g~~-----~~~~~~~~l~~~G~iv~~g  162 (240)
                      .+...     .+..+.+.|+++|+++.+.
T Consensus       132 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         132 DIAQKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             CCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            55421     2566778999999987664

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.97  E-value=0.065  Score=34.44  Aligned_cols=33  Identities=15%  Similarity=0.041  Sum_probs=29.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .++++|+| +|.+|+-+++++..+|.+|..+.+.
T Consensus        23 p~~~vIiG-~G~ig~E~A~~l~~lG~~Vtii~~~   55 (122)
T d1v59a2          23 PKRLTIIG-GGIIGLEMGSVYSRLGSKVTVVEFQ   55 (122)
T ss_dssp             CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCeEEEEC-CCchHHHHHHHHHhhCcceeEEEec
Confidence            37899999 8999999999999999999998853

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.91  E-value=0.053  Score=37.59  Aligned_cols=83  Identities=12%  Similarity=0.083  Sum_probs=56.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC--C
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG--I  143 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~--~  143 (240)
                      .|++|.|+| .|.+|....++++.+|++|++.++..+.      +.....  ... ...+     ...|+|+-++.-  +
T Consensus        41 ~gk~vgIiG-~G~IG~~va~~l~~~g~~v~~~d~~~~~------~~~~~~--~~l-~ell-----~~sDiv~~~~pl~~~  105 (181)
T d1qp8a1          41 QGEKVAVLG-LGEIGTRVGKILAALGAQVRGFSRTPKE------GPWRFT--NSL-EEAL-----REARAAVCALPLNKH  105 (181)
T ss_dssp             TTCEEEEES-CSTHHHHHHHHHHHTTCEEEEECSSCCC------SSSCCB--SCS-HHHH-----TTCSEEEECCCCSTT
T ss_pred             cCceEEEec-cccccccceeeeeccccccccccccccc------cceeee--ech-hhhh-----hccchhhcccccccc
Confidence            688999999 9999999999999999999999864210      111111  000 1111     346788877752  2


Q ss_pred             C----ccccccCCCCCcEEEEeCC
Q 045248          144 P----WSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       144 ~----~~~~~~~l~~~G~iv~~g~  163 (240)
                      +    -...++.++++..++.++-
T Consensus       106 t~~li~~~~l~~mk~~ailIN~~R  129 (181)
T d1qp8a1         106 TRGLVKYQHLALMAEDAVFVNVGR  129 (181)
T ss_dssp             TTTCBCHHHHTTSCTTCEEEECSC
T ss_pred             cccccccceeeeccccceEEeccc
Confidence            2    2356778899999988874

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=93.89  E-value=0.057  Score=36.49  Aligned_cols=94  Identities=16%  Similarity=0.263  Sum_probs=58.5

Q ss_pred             CCCeEEEEcCCchHHH-HHHHHHHhCCC-EEEEEeC-c-c--cHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeC
Q 045248           66 QQKNILVTAASGGVGH-YAVQLAKLGNT-HVTASCG-A-R--NIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHC  139 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~-~~~~~a~~~g~-~v~~~~~-~-~--~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~  139 (240)
                      +.-++.|+| +|++|. ...++++.... +++++++ + +  ..++++++|.....  ... ....+.....++|+||++
T Consensus         3 kkirvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~--~~~-d~l~~~~~~~~iDiVf~A   78 (157)
T d1nvmb1           3 QKLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTY--AGV-EGLIKLPEFADIDFVFDA   78 (157)
T ss_dssp             SCEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEES--SHH-HHHHHSGGGGGEEEEEEC
T ss_pred             CCcEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccc--cce-eeeeecccccccCEEEEc
Confidence            335899999 999987 56788887765 8888874 3 3  34677888865331  111 111222223569999999


Q ss_pred             CCCC-Cc--cccccCCCCCcEEEEeCC
Q 045248          140 ATGI-PW--STFEPNLGTNGKVIDITP  163 (240)
Q Consensus       140 ~g~~-~~--~~~~~~l~~~G~iv~~g~  163 (240)
                      +... ..  ....+.++.|-.++...+
T Consensus        79 Tpag~h~~~~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          79 TSASAHVQNEALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             SCHHHHHHHHHHHHHHCTTCEEEECST
T ss_pred             CCchhHHHhHHHHHHHHcCCEEEEccc
Confidence            8742 22  234455666667776664

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.86  E-value=0.078  Score=36.78  Aligned_cols=89  Identities=15%  Similarity=0.043  Sum_probs=60.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC--
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG--  142 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~--  142 (240)
                      -.++++.|+| .|.+|....++++.+|++|++.++..+.+.....+.. ..   +. ...+     ...|+|.-++.-  
T Consensus        42 l~~k~vgiiG-~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~-~~---~l-~ell-----~~sDiv~~~~Plt~  110 (184)
T d1ygya1          42 IFGKTVGVVG-LGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIE-LL---SL-DDLL-----ARADFISVHLPKTP  110 (184)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHHHTCE-EC---CH-HHHH-----HHCSEEEECCCCST
T ss_pred             ccceeeeecc-ccchhHHHHHHhhhccceEEeecCCCChhHHhhcCce-ec---cH-HHHH-----hhCCEEEEcCCCCc
Confidence            3688999999 9999999999999999999999975444444444432 11   10 1111     236788777652  


Q ss_pred             CC---c-cccccCCCCCcEEEEeCCC
Q 045248          143 IP---W-STFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       143 ~~---~-~~~~~~l~~~G~iv~~g~~  164 (240)
                      ++   + ...++.++++..++.++-.
T Consensus       111 ~T~~lin~~~l~~mk~~a~lIN~sRG  136 (184)
T d1ygya1         111 ETAGLIDKEALAKTKPGVIIVNAARG  136 (184)
T ss_dssp             TTTTCBCHHHHTTSCTTEEEEECSCT
T ss_pred             hhhhhhhHHHHhhhCCCceEEEecch
Confidence            22   2 2567788888888877643

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.85  E-value=0.04  Score=41.88  Aligned_cols=32  Identities=22%  Similarity=0.203  Sum_probs=30.0

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      +++||+||+|-+|..++..+...|++|+++++
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r   33 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIR   33 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEEC
Confidence            68999999999999999999999999999995

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.85  E-value=0.0059  Score=43.18  Aligned_cols=90  Identities=16%  Similarity=0.142  Sum_probs=53.9

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHH----HhcCCCEE-EeCCCCccccccCCCCCcccEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFV----KSLGADEV-LDYKTPDGAALKSPSGRKYDAVIHC  139 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~----~~~g~~~v-~~~~~~~~~~~~~~~~~~~d~v~d~  139 (240)
                      ++.+||=+| +| .|..+..+++ +|++|++++-+ ...+.+    +..+.+.+ +...+.  .  .......||+|+..
T Consensus        30 ~~grvLDiG-cG-~G~~~~~la~-~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~--~--~~~~~~~fD~I~~~  102 (198)
T d2i6ga1          30 APGRTLDLG-CG-NGRNSLYLAA-NGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDL--N--TLTFDGEYDFILST  102 (198)
T ss_dssp             CSCEEEEET-CT-TSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCT--T--TCCCCCCEEEEEEE
T ss_pred             CCCcEEEEC-CC-CCHHHHHHHH-HhhhhccccCcHHHHHHHHHHhhhccccchhhhheec--c--cccccccccEEEEe
Confidence            334899998 54 7877777765 58999999854 545544    34454322 111111  1  11123569999864


Q ss_pred             CC-----CC----CccccccCCCCCcEEEEeC
Q 045248          140 AT-----GI----PWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       140 ~g-----~~----~~~~~~~~l~~~G~iv~~g  162 (240)
                      .-     .+    .+..+.++|+++|.++...
T Consensus       103 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  134 (198)
T d2i6ga1         103 VVMMFLEAQTIPGLIANMQRCTKPGGYNLIVA  134 (198)
T ss_dssp             SCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             eeeecCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            42     11    2556777899999987764

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.84  E-value=0.035  Score=40.74  Aligned_cols=33  Identities=12%  Similarity=0.121  Sum_probs=30.1

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ...||+||++|+|.+.++.+...|++|+.+.++
T Consensus         2 ~vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~   34 (266)
T d1mxha_           2 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRH   34 (266)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            457999999999999999999999999999964

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=93.84  E-value=0.043  Score=40.72  Aligned_cols=31  Identities=19%  Similarity=0.080  Sum_probs=28.0

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      .+||+||++|+|.++++.+...|++|+.+.+
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga~V~i~~~   34 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYH   34 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeC
Confidence            4689999999999999999999999988774

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=93.83  E-value=0.02  Score=38.50  Aligned_cols=82  Identities=6%  Similarity=0.033  Sum_probs=44.3

Q ss_pred             EEEEcCCchHHHHHHHHHHhCCCEE-EEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCCccc
Q 045248           70 ILVTAASGGVGHYAVQLAKLGNTHV-TASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWST  147 (240)
Q Consensus        70 vlV~G~~g~vG~~~~~~a~~~g~~v-~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~  147 (240)
                      |-++| +|.+|...++.++. +..+ .+..++ ++.+.+.+.+.....+..+    .     -...|+||=|+....+..
T Consensus         2 IgfIG-~G~mg~~l~~~L~~-~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~----~-----~~~~DiVil~v~d~~i~~   70 (153)
T d2i76a2           2 LNFVG-TGTLTRFFLECLKD-RYEIGYILSRSIDRARNLAEVYGGKAATLEK----H-----PELNGVVFVIVPDRYIKT   70 (153)
T ss_dssp             CEEES-CCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCCCCCSSCC----C-----CC---CEEECSCTTTHHH
T ss_pred             EEEEe-CcHHHHHHHHHHHh-CCCEEEEEeCChhhhcchhhcccccccchhh----h-----hccCcEEEEeccchhhhH
Confidence            34688 99999998887765 4444 344454 6666665555432222111    1     134678888887666666


Q ss_pred             cccCCCCCcE-EEEeC
Q 045248          148 FEPNLGTNGK-VIDIT  162 (240)
Q Consensus       148 ~~~~l~~~G~-iv~~g  162 (240)
                      ..+.++..|+ ++.+.
T Consensus        71 v~~~l~~~~~ivi~~s   86 (153)
T d2i76a2          71 VANHLNLGDAVLVHCS   86 (153)
T ss_dssp             HHTTTCCSSCCEEECC
T ss_pred             HHhhhcccceeeeecc
Confidence            6666664444 44444

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.74  E-value=0.043  Score=41.89  Aligned_cols=34  Identities=21%  Similarity=0.154  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      .-+++||+||+|-+|..++..+...|.+|+++++
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~   48 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDN   48 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            4478999999999999999999999999999984

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=93.71  E-value=0.094  Score=38.37  Aligned_cols=32  Identities=13%  Similarity=0.031  Sum_probs=30.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEe
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASC   98 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~   98 (240)
                      .|.+|.|.| .|.+|..+++++...|++|+++.
T Consensus        35 ~g~~v~IQG-fGnVG~~~a~~L~e~Gakvvavs   66 (255)
T d1bgva1          35 VGKTVALAG-FGNVAWGAAKKLAELGAKAVTLS   66 (255)
T ss_dssp             TTCEEEECC-SSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEe
Confidence            789999999 99999999999999999999876

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.70  E-value=0.076  Score=40.48  Aligned_cols=99  Identities=10%  Similarity=0.052  Sum_probs=59.0

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeC-cccHHHHHh-----------cCC----CEEEeC
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCG-ARNIEFVKS-----------LGA----DEVLDY  117 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~-----------~g~----~~v~~~  117 (240)
                      +..++     +++++||=+|  .|.|..+.++|+..++ ++++++- +...+.+++           .|.    ...+..
T Consensus       145 ~~~~l-----~~~~~vlD~G--cG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~g  217 (328)
T d1nw3a_         145 DEIKM-----TDDDLFVDLG--SGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG  217 (328)
T ss_dssp             HHSCC-----CTTCEEEEET--CTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEC
T ss_pred             HHcCC-----CCCCEEEEcC--CCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEEC
Confidence            77778     8999998888  5678888999999998 8999994 444444422           221    122211


Q ss_pred             CCCccccccCCCCCcccEEEeCCC-C-----CCccccccCCCCCcEEEEeC
Q 045248          118 KTPDGAALKSPSGRKYDAVIHCAT-G-----IPWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       118 ~~~~~~~~~~~~~~~~d~v~d~~g-~-----~~~~~~~~~l~~~G~iv~~g  162 (240)
                      +-.+....+..  ..+|+|+-..- .     ..+....+.|+|||++|...
T Consensus       218 d~~~~~~~~~~--~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         218 DFLSEEWRERI--ANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             CTTSHHHHHHH--HHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             ccccccccccc--CcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEec
Confidence            11110000000  12567763221 1     12556778899999999765

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.69  E-value=0.039  Score=42.08  Aligned_cols=32  Identities=22%  Similarity=0.339  Sum_probs=28.9

Q ss_pred             CeE-EEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           68 KNI-LVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        68 ~~v-lV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      ++| ||+||+|-+|..++..+...|++|+++++
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r   33 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVR   33 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            357 99999999999999999889999999985

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.68  E-value=0.062  Score=37.58  Aligned_cols=36  Identities=19%  Similarity=0.151  Sum_probs=31.0

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHH
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIE  104 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~  104 (240)
                      ++|.|+| +|-+|...++++...|++|+..+.+ +.++
T Consensus         5 kkvaViG-aG~mG~~iA~~~a~~G~~V~l~D~~~~~l~   41 (192)
T d1f0ya2           5 KHVTVIG-GGLMGAGIAQVAAATGHTVVLVDQTEDILA   41 (192)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred             EEEEEEC-cCHHHHHHHHHHHhCCCcEEEEECChHHHH
Confidence            6899999 8999999999999999999999964 4433

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.64  E-value=0.06  Score=40.55  Aligned_cols=35  Identities=17%  Similarity=0.108  Sum_probs=31.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ++..+|+|+| +|.-|+.+...++..|.+|.+....
T Consensus         3 ~~~~kViVIG-aG~aGL~aA~~L~~~G~~V~VlEa~   37 (449)
T d2dw4a2           3 KKTGKVIIIG-SGVSGLAAARQLQSFGMDVTLLEAR   37 (449)
T ss_dssp             SCCCEEEEEC-CBHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCCcEEEEC-CCHHHHHHHHHHHhCCCCEEEEeCC
Confidence            4667899999 8999999999999999999998854

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=93.62  E-value=0.043  Score=40.09  Aligned_cols=97  Identities=13%  Similarity=0.131  Sum_probs=55.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH----hcCCCEEEeCCCCccccccCCCCCcccEEEeC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK----SLGADEVLDYKTPDGAALKSPSGRKYDAVIHC  139 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~----~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~  139 (240)
                      +++++||=+| +|. |..+..+++....+|++++.+ +..+.++    +.+...-+.+...+...........||+|+-.
T Consensus        23 ~~~~~VLDlG-CG~-G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~  100 (252)
T d1ri5a_          23 KRGDSVLDLG-CGK-GGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ  100 (252)
T ss_dssp             CTTCEEEEET-CTT-TTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred             CCcCEEEEec-ccC-cHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEc
Confidence            6889999998 553 555667777655599999954 6666664    33432111111111101111124579999754


Q ss_pred             CCCC-----------CccccccCCCCCcEEEEeCC
Q 045248          140 ATGI-----------PWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       140 ~g~~-----------~~~~~~~~l~~~G~iv~~g~  163 (240)
                      -.-.           .+..+.+.|+|||.++..-+
T Consensus       101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~  135 (252)
T d1ri5a_         101 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP  135 (252)
T ss_dssp             SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence            4321           13445678999999876543

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=93.56  E-value=0.047  Score=42.05  Aligned_cols=32  Identities=22%  Similarity=0.222  Sum_probs=29.6

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      +.|||+||+|-+|..++..+...|.+|+++++
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r   33 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKR   33 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            67899999999999999999999999999996

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=93.54  E-value=0.067  Score=39.25  Aligned_cols=77  Identities=18%  Similarity=0.250  Sum_probs=49.3

Q ss_pred             CCCeEEEEcCCc--hHHHHHHHHHHhCCCEEEEEeCc-ccH-HHH-HhcCCCE-EE--eCCCCc--cc---ccc--CCCC
Q 045248           66 QQKNILVTAASG--GVGHYAVQLAKLGNTHVTASCGA-RNI-EFV-KSLGADE-VL--DYKTPD--GA---ALK--SPSG  130 (240)
Q Consensus        66 ~g~~vlV~G~~g--~vG~~~~~~a~~~g~~v~~~~~~-~~~-~~~-~~~g~~~-v~--~~~~~~--~~---~~~--~~~~  130 (240)
                      .|+++||+||+|  |+|.++.+-+...|++|+.+.++ ++. +.+ ++++... .+  |..++.  ..   .+.  ....
T Consensus         5 ~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~~~~~   84 (268)
T d2h7ma1           5 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGAG   84 (268)
T ss_dssp             TTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHCTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHcCCceeeEeeecccccccccccchhhhccccC
Confidence            789999999654  69999999999999999998865 332 323 4555322 22  222211  11   111  1223


Q ss_pred             CcccEEEeCCCC
Q 045248          131 RKYDAVIHCATG  142 (240)
Q Consensus       131 ~~~d~v~d~~g~  142 (240)
                      ..+|+++.+.|.
T Consensus        85 ~~ld~~i~~ag~   96 (268)
T d2h7ma1          85 NKLDGVVHSIGF   96 (268)
T ss_dssp             CCEEEEEECCCC
T ss_pred             CCcceeeecccc
Confidence            568999999983

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.46  E-value=0.012  Score=42.18  Aligned_cols=91  Identities=21%  Similarity=0.207  Sum_probs=55.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH----hcCCC-EEEeCCCCccccccCCCCCcccEEEe
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK----SLGAD-EVLDYKTPDGAALKSPSGRKYDAVIH  138 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~----~~g~~-~v~~~~~~~~~~~~~~~~~~~d~v~d  138 (240)
                      +++.+||=+| +| .|..+..+++ .|.+|++++.+ +..+.++    +.+.. ..+..+.   ..+ ......||+|+-
T Consensus        36 ~~~~~ILDiG-cG-~G~~~~~la~-~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~---~~l-~~~~~~fD~I~~  108 (226)
T d1ve3a1          36 KKRGKVLDLA-CG-VGGFSFLLED-YGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDA---RKL-SFEDKTFDYVIF  108 (226)
T ss_dssp             CSCCEEEEET-CT-TSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCT---TSC-CSCTTCEEEEEE
T ss_pred             CCCCEEEEEC-CC-cchhhhhHhh-hhcccccccccccchhhhhhhhcccccccccccccc---ccc-cccCcCceEEEE
Confidence            6778999998 44 4667777776 58899999954 5565554    33422 2222111   111 122356999875


Q ss_pred             CCCCC---------CccccccCCCCCcEEEEeC
Q 045248          139 CATGI---------PWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       139 ~~g~~---------~~~~~~~~l~~~G~iv~~g  162 (240)
                      .-.-.         .+..+.+.|+|||+++..-
T Consensus       109 ~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~  141 (226)
T d1ve3a1         109 IDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYF  141 (226)
T ss_dssp             ESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ecchhhCChhHHHHHHHHHHHHcCcCcEEEEEE
Confidence            44311         2556778899999987543

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=93.46  E-value=0.063  Score=38.74  Aligned_cols=34  Identities=21%  Similarity=0.192  Sum_probs=30.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      +..++|+|+| +|..|+++...++..|.+|.++++
T Consensus         4 ~~~~kVvVIG-aGiaGl~~A~~L~~~G~~V~vier   37 (268)
T d1c0pa1           4 HSQKRVVVLG-SGVIGLSSALILARKGYSVHILAR   37 (268)
T ss_dssp             CCSCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCCcEEEEC-ccHHHHHHHHHHHHCCCCEEEEeC
Confidence            4567899999 899999999999999999999985

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=93.44  E-value=0.17  Score=34.54  Aligned_cols=115  Identities=13%  Similarity=-0.005  Sum_probs=65.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCE--EEeCCCCccccccCCCCCcccEEEeCCCCCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADE--VLDYKTPDGAALKSPSGRKYDAVIHCATGIP  144 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~--v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~  144 (240)
                      .+|-++| .|.+|...+.-+...|++|++..++ ++.+.+.+.++..  ....... ......  -...|.++-++....
T Consensus         3 ~nIg~IG-lG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~--~~~~~~ii~~~~~~~   78 (176)
T d2pgda2           3 ADIALIG-LAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSL-EEMVSK--LKKPRRIILLVKAGQ   78 (176)
T ss_dssp             BSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSH-HHHHHH--BCSSCEEEECSCTTH
T ss_pred             CcEEEEe-EhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhh-hhhhhh--hcccceEEEecCchH
Confidence            5789999 9999999888888889999999964 7777776655321  0000100 011111  133567776665421


Q ss_pred             -----ccccccCCCCCcEEEEeCCCchHHHHHHHhhheeccceeeeE
Q 045248          145 -----WSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPL  186 (240)
Q Consensus       145 -----~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~  186 (240)
                           .......++++-.++.++.............+..+++.+...
T Consensus        79 ~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~lda  125 (176)
T d2pgda2          79 AVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGS  125 (176)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceecc
Confidence                 233445566777777776544333322333333444444443

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.28  E-value=0.081  Score=34.09  Aligned_cols=33  Identities=3%  Similarity=-0.015  Sum_probs=30.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .++++|+| +|.+|+-+++.++.+|.+|..+.+.
T Consensus        22 pk~vvIvG-gG~iG~E~A~~l~~~G~~Vtlv~~~   54 (125)
T d3grsa2          22 PGRSVIVG-AGYIAVEMAGILSALGSKTSLMIRH   54 (125)
T ss_dssp             CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCEEEEEc-CCccHHHHHHHHhcCCcEEEEEeec
Confidence            37899999 8999999999999999999999864

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=93.25  E-value=0.0067  Score=41.58  Aligned_cols=96  Identities=14%  Similarity=0.061  Sum_probs=53.7

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhC-CCEEEEEe-CcccHHHHHhcCCCEEEeCCCCc-cccccCCCCCcccEEEeCCCCCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLG-NTHVTASC-GARNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCATGIP  144 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~-g~~v~~~~-~~~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~~  144 (240)
                      =+|.|+|++|-+|..+++.+... ++++++.. ++.....-+..|...-....... ...... --..+|+++|++..+.
T Consensus         5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~-~~~~~DViIDFs~p~~   83 (162)
T d1diha1           5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDA-VKDDFDVFIDFTRPEG   83 (162)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTT-TTTSCSEEEECSCHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHH-HhcccceEEEeccHHH
Confidence            47899998999999999988865 56776555 32221111111110000000000 001111 1246899999998766


Q ss_pred             ccccccCCCCCcEEEEeCCC
Q 045248          145 WSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       145 ~~~~~~~l~~~G~iv~~g~~  164 (240)
                      ....++.....|+=+.+|..
T Consensus        84 ~~~~~~~a~~~~~~~ViGTT  103 (162)
T d1diha1          84 TLNHLAFCRQHGKGMVIGTT  103 (162)
T ss_dssp             HHHHHHHHHHTTCEEEECCC
T ss_pred             HHHHHHHHHhccceeEEecC
Confidence            66666666666766666643

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.24  E-value=0.054  Score=37.44  Aligned_cols=81  Identities=12%  Similarity=0.024  Sum_probs=46.8

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEE---EeCCCCccccc--cC--CCCCcccEEEeCCC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEV---LDYKTPDGAAL--KS--PSGRKYDAVIHCAT  141 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v---~~~~~~~~~~~--~~--~~~~~~d~v~d~~g  141 (240)
                      +|.|+| +|.+|.+....+...|.+|....++...+..+++...+.   +..........  ..  ..-...|+|+-++.
T Consensus         2 kI~ViG-aG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp   80 (180)
T d1txga2           2 IVSILG-AGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (180)
T ss_dssp             EEEEES-CCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             EEEEEC-CCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence            588999 899999999888888889998887533333333221111   00000000000  00  01245899999998


Q ss_pred             CCCcccccc
Q 045248          142 GIPWSTFEP  150 (240)
Q Consensus       142 ~~~~~~~~~  150 (240)
                      ...++..++
T Consensus        81 s~~~~~~~~   89 (180)
T d1txga2          81 TDGVLPVMS   89 (180)
T ss_dssp             GGGHHHHHH
T ss_pred             hhhhHHHHH
Confidence            655444443

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.22  E-value=0.14  Score=34.78  Aligned_cols=95  Identities=11%  Similarity=0.088  Sum_probs=56.0

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCC-CEEEEEeCc----ccHHHHHhc----C---CCEEEeCC-----CCccccc-----c
Q 045248           69 NILVTAASGGVGHYAVQLAKLGN-THVTASCGA----RNIEFVKSL----G---ADEVLDYK-----TPDGAAL-----K  126 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g-~~v~~~~~~----~~~~~~~~~----g---~~~v~~~~-----~~~~~~~-----~  126 (240)
                      +|.|.| -|-+|.++.+.+.... .+|+++-.+    +.+.++-++    |   ..-..+..     .......     .
T Consensus         2 kigING-fGRIGR~v~R~~~~~~~~~iv~INd~~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~p~   80 (166)
T d2b4ro1           2 KLGING-FGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKDPS   80 (166)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSSGG
T ss_pred             eEEEEC-CCHHHHHHHHHHhhCCCcEEEEECCCCCChHHhhhhhhcccccccceeeeccCCceEEecCcEEEEEeCCChH
Confidence            588999 9999999999887664 488877642    334444332    1   11111100     0000000     1


Q ss_pred             CCC--CCcccEEEeCCCC-CCccccccCCCCCcEEEEeCCC
Q 045248          127 SPS--GRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       127 ~~~--~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      +..  ..++|+|+||+|. .....+...+..+.+-|.+..+
T Consensus        81 ~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP  121 (166)
T d2b4ro1          81 QIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAP  121 (166)
T ss_dssp             GCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSC
T ss_pred             HccccccCCCEEEEecccccchhhhhhhhccCCCEEEEecc
Confidence            111  2379999999996 4466777788888766666544

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=93.14  E-value=0.12  Score=34.40  Aligned_cols=52  Identities=12%  Similarity=0.090  Sum_probs=38.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDY  117 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~  117 (240)
                      .-++|.|+|+.|.+|......++..|+.|.+.++. .........+++.++..
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~v~~~   60 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESILANADVVIVS   60 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHHHHTTCSEEEEC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccchhhhhccccccc
Confidence            34689999988999999999999999999999864 33333334445555443

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.12  E-value=0.03  Score=41.96  Aligned_cols=93  Identities=16%  Similarity=0.189  Sum_probs=54.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHh----cCCCE-----EEeCCCCccccccCCCCCccc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKS----LGADE-----VLDYKTPDGAALKSPSGRKYD  134 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~----~g~~~-----v~~~~~~~~~~~~~~~~~~~d  134 (240)
                      +++.+||=+|  .|.|..+..+++. |++|++++.+ +-++.+++    .+...     .+..-+............+||
T Consensus        55 ~~~~~vLD~G--cG~G~~~~~la~~-g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd  131 (292)
T d1xvaa_          55 HGCHRVLDVA--CGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD  131 (292)
T ss_dssp             TTCCEEEESS--CTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred             cCCCEEEEec--CCCcHHHHHHHHc-CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCce
Confidence            5678899888  4467777777775 8999999954 55555543    22211     111000000011122346799


Q ss_pred             EEEeCCCC------C---------CccccccCCCCCcEEEE
Q 045248          135 AVIHCATG------I---------PWSTFEPNLGTNGKVID  160 (240)
Q Consensus       135 ~v~d~~g~------~---------~~~~~~~~l~~~G~iv~  160 (240)
                      .|+.....      +         .+..+.+.|+|||.++.
T Consensus       132 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~  172 (292)
T d1xvaa_         132 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI  172 (292)
T ss_dssp             EEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             EEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEE
Confidence            99854321      0         25678889999998775

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=93.11  E-value=0.074  Score=40.25  Aligned_cols=34  Identities=18%  Similarity=0.090  Sum_probs=30.1

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcc
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGAR  101 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~  101 (240)
                      .++|+|+| +|..|+.++..+...|.+|.++...+
T Consensus         2 ~KKI~IIG-aG~sGL~aA~~L~k~G~~V~viEk~~   35 (314)
T d2bi7a1           2 SKKILIVG-AGFSGAVIGRQLAEKGHQVHIIDQRD   35 (314)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCEEEEEC-CcHHHHHHHHHHHhCCCCEEEEECCC
Confidence            57899999 99999999999888899999999653

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.11  E-value=0.14  Score=34.82  Aligned_cols=95  Identities=14%  Similarity=0.113  Sum_probs=54.9

Q ss_pred             eEEEEcCCchHHHHHHHHHHhC---CCEEEEEeCc---ccHHHHHhc----CC-CEEEeCCCCc-------ccc-----c
Q 045248           69 NILVTAASGGVGHYAVQLAKLG---NTHVTASCGA---RNIEFVKSL----GA-DEVLDYKTPD-------GAA-----L  125 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~---g~~v~~~~~~---~~~~~~~~~----g~-~~v~~~~~~~-------~~~-----~  125 (240)
                      +|.|.| -|-+|..+.+.+-..   ..+|+++-..   +...++-++    |. ..-+...+..       ...     .
T Consensus         2 kIgING-fGRIGR~v~R~~~~~~~~~i~vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~~p   80 (169)
T d1hdgo1           2 RVAING-FGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP   80 (169)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred             EEEEEC-CChHHHHHHHHHHhccCCCEEEEEeccCccHHHHHHHHhccccccccCceEEEECCEEEECCEEEEEEeCCCh
Confidence            688999 999999999877632   3588877643   344444332    11 0001111100       000     0


Q ss_pred             cCCC--CCcccEEEeCCCC-CCccccccCCCCCcEEEEeCCC
Q 045248          126 KSPS--GRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       126 ~~~~--~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      .+..  ..++|+|+||+|. .....+...++.|-+-|.+..+
T Consensus        81 ~~i~W~~~gvD~ViEcTG~f~t~~~~~~hl~~GakkViiSAP  122 (169)
T d1hdgo1          81 SKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAP  122 (169)
T ss_dssp             GGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred             hhCCccccCCCEEEEecceeccccchhhhccCCCceEEEecc
Confidence            1111  2369999999997 4466777788887655656544

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.06  E-value=0.1  Score=32.96  Aligned_cols=33  Identities=12%  Similarity=0.089  Sum_probs=29.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .++++|+| +|.+|+-+++.++.+|.+|..+.+.
T Consensus        21 p~~vvIiG-gG~~G~E~A~~l~~~g~~Vtlve~~   53 (115)
T d1lvla2          21 PQHLVVVG-GGYIGLELGIAYRKLGAQVSVVEAR   53 (115)
T ss_dssp             CSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCeEEEEC-CCHHHHHHHHHHhhcccceEEEeee
Confidence            37899999 8999999999999999999888853

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.03  E-value=0.17  Score=32.90  Aligned_cols=35  Identities=26%  Similarity=0.198  Sum_probs=31.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .++++++|+| +|.+|+-++..+...|.+|..+.+.
T Consensus        33 ~~~k~v~VIG-gG~iG~E~A~~l~~~g~~Vtvie~~   67 (133)
T d1q1ra2          33 IADNRLVVIG-GGYIGLEVAATAIKANMHVTLLDTA   67 (133)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             ccCCEEEEEC-CchHHHHHHHHHHhhCcceeeeeec
Confidence            5678999999 8999999999999999999998853

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.77  E-value=0.095  Score=33.65  Aligned_cols=35  Identities=20%  Similarity=0.059  Sum_probs=31.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      +..++++|+| +|-+|+-++++++.+|.+|..+.+.
T Consensus        23 ~~p~~~viiG-~G~iglE~A~~~~~~G~~Vtvi~~~   57 (123)
T d1dxla2          23 EIPKKLVVIG-AGYIGLEMGSVWGRIGSEVTVVEFA   57 (123)
T ss_dssp             SCCSEEEESC-CSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             ccCCeEEEEc-cchHHHHHHHHHHhcCCeEEEEEEc
Confidence            3457899999 8999999999999999999998853

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.73  E-value=0.084  Score=33.87  Aligned_cols=34  Identities=15%  Similarity=-0.032  Sum_probs=29.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ..++++|+| +|.+|+-++++++.+|.+|..+.++
T Consensus        19 ~P~~vvIIG-gG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          19 CPGKTLVVG-ASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCCSEEEEC-CSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCeEEEEC-CCccHHHHHHHHhhcCCeEEEEEec
Confidence            346899999 8999999999999999988888753

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.73  E-value=0.14  Score=34.12  Aligned_cols=35  Identities=14%  Similarity=0.044  Sum_probs=28.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCC--EEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNT--HVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~~~  100 (240)
                      ..+.+|.|+| +|.+|..++..+...|.  +++.++..
T Consensus         4 ~~~~KI~IiG-aG~vG~~~a~~l~~~~l~~el~L~Di~   40 (148)
T d1ldna1           4 NGGARVVVIG-AGFVGASYVFALMNQGIADEIVLIDAN   40 (148)
T ss_dssp             TTSCEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCCeEEEEC-cCHHHHHHHHHHHhcCCCceEEEEeec
Confidence            4678999999 69999988888877765  78877754

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.70  E-value=0.69  Score=31.49  Aligned_cols=87  Identities=11%  Similarity=0.053  Sum_probs=55.7

Q ss_pred             eEEEEcCCchHHHHHHHHHHhC-CCEEEEEeC-c-cc-HHHHHhcCC---CEEEeCCCCccccccCCCCCcccEEEeCCC
Q 045248           69 NILVTAASGGVGHYAVQLAKLG-NTHVTASCG-A-RN-IEFVKSLGA---DEVLDYKTPDGAALKSPSGRKYDAVIHCAT  141 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~-g~~v~~~~~-~-~~-~~~~~~~g~---~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g  141 (240)
                      ++.|+| +|.+|...++.++.. ++++++++. + ++ .+.+++++.   ..+++  +. ...+   ....+|+|+-++.
T Consensus         3 ki~iIG-~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~--~~-~~ll---~~~~iD~v~I~tp   75 (184)
T d1ydwa1           3 RIGVMG-CADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHG--SY-ESLL---EDPEIDALYVPLP   75 (184)
T ss_dssp             EEEEES-CCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEES--SH-HHHH---HCTTCCEEEECCC
T ss_pred             EEEEEc-CCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecC--cH-HHhh---hccccceeeeccc
Confidence            588999 899999888888876 568888774 3 34 334456653   22322  11 1112   2246999999887


Q ss_pred             CCC-ccccccCCCCCcEEEEeCC
Q 045248          142 GIP-WSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       142 ~~~-~~~~~~~l~~~G~iv~~g~  163 (240)
                      ... ++.+..+++.+ +=|.+..
T Consensus        76 ~~~h~~~~~~~l~~g-~~v~~EK   97 (184)
T d1ydwa1          76 TSLHVEWAIKAAEKG-KHILLEK   97 (184)
T ss_dssp             GGGHHHHHHHHHTTT-CEEEECS
T ss_pred             chhhcchhhhhhhcc-ceeeccc
Confidence            655 66777777765 5555654

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=92.68  E-value=0.13  Score=38.46  Aligned_cols=32  Identities=9%  Similarity=0.057  Sum_probs=28.6

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      ++|||+||+|-+|..+++.+...|..++.+.+
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~   34 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRT   34 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTEEEECCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcCEEEEecC
Confidence            58999999999999999999999998877764

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=92.60  E-value=0.0082  Score=43.92  Aligned_cols=87  Identities=21%  Similarity=0.214  Sum_probs=53.2

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH----hcCCC-EEEeCCCCccccccCCCCCcccEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK----SLGAD-EVLDYKTPDGAALKSPSGRKYDAVIHC  139 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~----~~g~~-~v~~~~~~~~~~~~~~~~~~~d~v~d~  139 (240)
                      ++++||=+| +| .|..+..+++ .|.+|++++.+ +..+.++    ..|.. .++.   .+.....  ..+.||+|+-.
T Consensus        37 ~~~~vLDiG-CG-~G~~~~~l~~-~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~---~d~~~~~--~~~~fD~i~~~  108 (246)
T d1y8ca_          37 VFDDYLDLA-CG-TGNLTENLCP-KFKNTWAVDLSQEMLSEAENKFRSQGLKPRLAC---QDISNLN--INRKFDLITCC  108 (246)
T ss_dssp             CTTEEEEET-CT-TSTTHHHHGG-GSSEEEEECSCHHHHHHHHHHHHHTTCCCEEEC---CCGGGCC--CSCCEEEEEEC
T ss_pred             CCCeEEEEe-Cc-CCHHHHHHHH-hCCccEeeccchhhhhhccccccccCccceeec---cchhhhc--cccccccccee
Confidence            567899888 44 5666666665 47899999965 5555554    34432 2221   1111111  24579999854


Q ss_pred             CCC----C-------CccccccCCCCCcEEEE
Q 045248          140 ATG----I-------PWSTFEPNLGTNGKVID  160 (240)
Q Consensus       140 ~g~----~-------~~~~~~~~l~~~G~iv~  160 (240)
                      .+.    .       .+..+.+.|+|||.++.
T Consensus       109 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~  140 (246)
T d1y8ca_         109 LDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             TTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             eeeeeccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence            331    0       25668889999998774

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=92.52  E-value=0.32  Score=32.14  Aligned_cols=94  Identities=13%  Similarity=0.120  Sum_probs=57.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-cc-HHHH---HhcCCCEEEeCCCCccccccCCCCCcccEEEeCCC
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RN-IEFV---KSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCAT  141 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~-~~~~---~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g  141 (240)
                      .+.++|+| .|.+|..+++.+...|.+|+++..+ ++ .+.+   ...|.. ++..+..+...++..+-+..|.++-+++
T Consensus         3 knHiII~G-~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~-vi~Gd~~d~~~L~~a~i~~a~~vi~~~~   80 (153)
T d1id1a_           3 KDHFIVCG-HSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNAD-VIPGDSNDSSVLKKAGIDRCRAILALSD   80 (153)
T ss_dssp             CSCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCE-EEESCTTSHHHHHHHTTTTCSEEEECSS
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcE-EEEccCcchHHHHHhccccCCEEEEccc
Confidence            46799999 8999999999999999988888853 32 2233   334443 4433333333334334456888888887


Q ss_pred             CCC----ccccccCCCCCcEEEEeC
Q 045248          142 GIP----WSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       142 ~~~----~~~~~~~l~~~G~iv~~g  162 (240)
                      .+.    .-...+.+.+.-+++..-
T Consensus        81 ~d~~n~~~~~~~r~~~~~~~iia~~  105 (153)
T d1id1a_          81 NDADNAFVVLSAKDMSSDVKTVLAV  105 (153)
T ss_dssp             CHHHHHHHHHHHHHHTSSSCEEEEC
T ss_pred             cHHHHHHHHHHHHHhCCCCceEEEE
Confidence            532    112233345555555443

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=92.48  E-value=0.073  Score=35.75  Aligned_cols=138  Identities=14%  Similarity=0.135  Sum_probs=73.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCC---EEEEEeCcccHHHHHhcCCCEEEeCCCCc--cccccCCCCCcccEEEeCCC
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNT---HVTASCGARNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCAT  141 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~---~v~~~~~~~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g  141 (240)
                      |-+|.|+||+|-+|.-+++++..+..   ++...++++.      .|. .+- .....  ............|+++-+.+
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s------~G~-~~~-~~~~~~~~~~~~~~~~~~~d~~f~~~~   72 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARS------AGK-SLK-FKDQDITIEETTETAFEGVDIALFSAG   72 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGG------TTC-EEE-ETTEEEEEEECCTTTTTTCSEEEECSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccc------ccc-ccc-ccCCcccccccchhhhhhhhhhhhccC
Confidence            56899999999999999999998854   4444444321      221 111 11111  11112223356889998888


Q ss_pred             CCC-ccccccCCCCCcEEEEeCCCch-------HHHHHHHhhheeccceeeeEEEcCCH-HHHHHHHHHHHCCceEEecC
Q 045248          142 GIP-WSTFEPNLGTNGKVIDITPGPS-------AMLTFALKKLTFSKKQLVPLLLIPKR-ENLDFLVKLVKEGKLKTVIN  212 (240)
Q Consensus       142 ~~~-~~~~~~~l~~~G~iv~~g~~~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~  212 (240)
                      ... .....+...++-+++..+..-.       .....+...+. +...++..  ..+. ..+.-+.-+++.|.+++...
T Consensus        73 ~~~s~~~~~~~~~~~~~VIDlSsdfR~~~~~~~~~pe~n~~~~~-~~~~iIAn--PgC~tt~i~~l~PL~~~~lik~~~~  149 (154)
T d2gz1a1          73 SSTSAKYAPYAVKAGVVVVDNTSYFRQNPDVPLVVPEVNAHALD-AHNGIIAC--PNAAWNSVQIAETLHERGLVRPTAE  149 (154)
T ss_dssp             HHHHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCHHHHGGGGG-GCCSEEEC--CCTHHHHHHHHHHHHHTTCCSCCSS
T ss_pred             ccchhhHHhhhccccceehhcChhhhccCCcccccchhhHHHhc-CcCceEEC--CCCHHHHHHHHHHHHHhcCCCccce
Confidence            643 5555566777888888873211       11122222221 22223322  1231 12333567778888877554


Q ss_pred             cee
Q 045248          213 SKH  215 (240)
Q Consensus       213 ~~~  215 (240)
                      ..|
T Consensus       150 ~~~  152 (154)
T d2gz1a1         150 LKF  152 (154)
T ss_dssp             CCS
T ss_pred             eee
Confidence            333

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=92.42  E-value=0.016  Score=40.66  Aligned_cols=85  Identities=9%  Similarity=0.024  Sum_probs=50.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCC-CCcccc--ccCC--CCCcccEEEeCCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYK-TPDGAA--LKSP--SGRKYDAVIHCAT  141 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~-~~~~~~--~~~~--~~~~~d~v~d~~g  141 (240)
                      .+|.|+| +|.+|.++..++...|.+|....++ +..+.+.+-+....+-+. .....+  ....  .-.+.|+++-++.
T Consensus         8 ~KI~ViG-aG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiavP   86 (189)
T d1n1ea2           8 NKAVVFG-SGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIP   86 (189)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECSC
T ss_pred             ceEEEEC-CCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcCc
Confidence            4799999 9999999999998888899888875 556655443321111000 000000  0000  0135789998887


Q ss_pred             CCCccccccCCC
Q 045248          142 GIPWSTFEPNLG  153 (240)
Q Consensus       142 ~~~~~~~~~~l~  153 (240)
                      ...++..++.++
T Consensus        87 s~~~~~~~~~~~   98 (189)
T d1n1ea2          87 TQFLRGFFEKSG   98 (189)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH
Confidence            655555555443

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=92.37  E-value=0.026  Score=41.40  Aligned_cols=94  Identities=21%  Similarity=0.266  Sum_probs=57.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCC-CEEEEEeCcccHHHH----HhcCCCEEEeCCCCccccccCCCCCcccEEEeC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGN-THVTASCGARNIEFV----KSLGADEVLDYKTPDGAALKSPSGRKYDAVIHC  139 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g-~~v~~~~~~~~~~~~----~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~  139 (240)
                      .+..+||=+|  +|.|..+..+++... .++++++.++..+.+    .+.|....+.....+   .......++|+|+-.
T Consensus        79 ~~~~~VLDvG--cG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D---~~~~~~~~~D~v~~~  153 (253)
T d1tw3a2          79 TNVRHVLDVG--GGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGD---FFEPLPRKADAIILS  153 (253)
T ss_dssp             TTCSEEEEET--CTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECC---TTSCCSSCEEEEEEE
T ss_pred             ccCCEEEEeC--CCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhcccc---chhhcccchhheeec
Confidence            6778898887  567888999999875 588888855433333    344432111111111   111223568998744


Q ss_pred             CC-----CC----CccccccCCCCCcEEEEeCC
Q 045248          140 AT-----GI----PWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       140 ~g-----~~----~~~~~~~~l~~~G~iv~~g~  163 (240)
                      .-     .+    .+..+.+.|+|||+++....
T Consensus       154 ~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~  186 (253)
T d1tw3a2         154 FVLLNWPDHDAVRILTRCAEALEPGGRILIHER  186 (253)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             cccccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence            32     11    25677889999999987753

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.35  E-value=0.077  Score=40.42  Aligned_cols=31  Identities=19%  Similarity=0.119  Sum_probs=28.6

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEe
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASC   98 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~   98 (240)
                      ++|||+||+|=+|..++..+...|.+|++++
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld   33 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVID   33 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEE
Confidence            6899999999999999999988999999885

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=92.35  E-value=0.018  Score=43.11  Aligned_cols=92  Identities=18%  Similarity=0.164  Sum_probs=58.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhC--CCEEEEEeCc-ccHHHHH----hcCCCEEEeCCCCccccccCCCCCcccEEE
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLG--NTHVTASCGA-RNIEFVK----SLGADEVLDYKTPDGAALKSPSGRKYDAVI  137 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~--g~~v~~~~~~-~~~~~~~----~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~  137 (240)
                      .+..+||=+| +| .|..+..+++..  +.+|++++.+ ...+.++    ..+.+..+  ...+.....  ..+.||+|+
T Consensus        26 ~~~~~ILDiG-cG-~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f--~~~d~~~~~--~~~~fD~v~   99 (281)
T d2gh1a1          26 TKPVHIVDYG-CG-YGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEF--LEGDATEIE--LNDKYDIAI   99 (281)
T ss_dssp             CSCCEEEEET-CT-TTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEE--EESCTTTCC--CSSCEEEEE
T ss_pred             CCcCEEEEec-Cc-CCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccc--ccccccccc--ccCCceEEE
Confidence            5678898888 54 688888888865  4699999954 5556554    33432112  111111111  235799998


Q ss_pred             eCCC-----CC--CccccccCCCCCcEEEEeC
Q 045248          138 HCAT-----GI--PWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       138 d~~g-----~~--~~~~~~~~l~~~G~iv~~g  162 (240)
                      -.-.     .+  .+..+.+.|+|||.++...
T Consensus       100 ~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~  131 (281)
T d2gh1a1         100 CHAFLLHMTTPETMLQKMIHSVKKGGKIICFE  131 (281)
T ss_dssp             EESCGGGCSSHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EehhhhcCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence            6543     21  2677888999999988765

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.24  E-value=0.071  Score=39.47  Aligned_cols=30  Identities=13%  Similarity=0.075  Sum_probs=27.7

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      .|+|+| +|+.|+.+...++..|.+|.++++
T Consensus         4 ~V~IvG-aGp~Gl~~A~~L~~~G~~v~vlE~   33 (292)
T d1k0ia1           4 QVAIIG-AGPSGLLLGQLLHKAGIDNVILER   33 (292)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHHTCCEEEECS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHCCCCEEEEeC
Confidence            599999 899999999999999999999985

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=92.23  E-value=0.26  Score=33.77  Aligned_cols=133  Identities=18%  Similarity=0.092  Sum_probs=74.1

Q ss_pred             CeEEEEcCCchHHHH-HHHHHHhC-C-CEEEEEeCc--ccH-HHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCC
Q 045248           68 KNILVTAASGGVGHY-AVQLAKLG-N-THVTASCGA--RNI-EFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCAT  141 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~-~~~~a~~~-g-~~v~~~~~~--~~~-~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g  141 (240)
                      -++.|+| +|.+|.- .+...+.. + ++++++++.  ++. +..++++...+++  +. ...+   ....+|+|+-++.
T Consensus         4 irigiIG-~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~--~~-~ell---~~~~id~v~I~tp   76 (181)
T d1zh8a1           4 IRLGIVG-CGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFD--SY-EELL---ESGLVDAVDLTLP   76 (181)
T ss_dssp             EEEEEEC-CSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEES--CH-HHHH---HSSCCSEEEECCC
T ss_pred             cEEEEEc-CCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceee--ee-eccc---cccccceeecccc
Confidence            3689999 8999964 56666654 3 488887743  343 3456777665542  11 1112   2356899998887


Q ss_pred             CCC-ccccccCCCCCcEEEEeCCCchHHHH---HHHhhheeccceeeeEEEc-C--CHHHHHHHHHHHHCCceE
Q 045248          142 GIP-WSTFEPNLGTNGKVIDITPGPSAMLT---FALKKLTFSKKQLVPLLLI-P--KRENLDFLVKLVKEGKLK  208 (240)
Q Consensus       142 ~~~-~~~~~~~l~~~G~iv~~g~~~~~~~~---~~~~~~~~~~~~i~~~~~~-~--~~~~~~~~~~~~~~~~i~  208 (240)
                      ... ...+..+++. |+=|.+..+-.....   ........++..+.-.+.. .  ....+.++.+++++|++-
T Consensus        77 ~~~h~~~~~~al~~-gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~~~v~~~~R~~~~~~~~~~~~~~i~~G~ig  149 (181)
T d1zh8a1          77 VELNLPFIEKALRK-GVHVICEKPISTDVETGKKVVELSEKSEKTVYIAENFRENSYQKEFEDFYQVVAEGKPN  149 (181)
T ss_dssp             GGGHHHHHHHHHHT-TCEEEEESSSSSSHHHHHHHHHHHHHCSSCEEEECGGGCCHHHHHHHHHHHHHHSCCCC
T ss_pred             cccccccccccccc-chhhhcCCCCcCCHHHHHHHHHHHHHhCCeEEEEeeccccccCHHHHHHHHHHHCCCCc
Confidence            655 5566666665 465666543221111   1111111223333222211 1  235688889999998864

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=92.22  E-value=0.35  Score=32.73  Aligned_cols=85  Identities=11%  Similarity=0.154  Sum_probs=55.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhC-CCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC-
Q 045248           68 KNILVTAASGGVGHYAVQLAKLG-NTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP-  144 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~-g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~-  144 (240)
                      =+|.|+| +|.+|...+..++.. +++++++++. ...     .....+..+.+.  ...    ...+|+|+.|++... 
T Consensus         4 irvgiiG-~G~ig~~~~~~l~~~~~~elvav~~~~~~~-----~~~~~~~~~~~~--~~~----~~~~D~Vvi~tp~~~h   71 (170)
T d1f06a1           4 IRVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFSRRATL-----DTKTPVFDVADV--DKH----ADDVDVLFLCMGSATD   71 (170)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEESSSCC-----SSSSCEEEGGGG--GGT----TTTCSEEEECSCTTTH
T ss_pred             ceEEEEC-ChHHHHHHHHHHHhCCCcEEEEEEeccccc-----ccccccccchhh--hhh----ccccceEEEeCCCccc
Confidence            3689999 899999888888866 4588877743 211     111122222211  111    135899999998766 


Q ss_pred             ccccccCCCCCcEEEEeCCC
Q 045248          145 WSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       145 ~~~~~~~l~~~G~iv~~g~~  164 (240)
                      .+.+.++|+.|-.++....+
T Consensus        72 ~~~a~~aL~aG~~vv~~~~~   91 (170)
T d1f06a1          72 IPEQAPKFAQFACTVDTYDN   91 (170)
T ss_dssp             HHHHHHHHTTTSEEECCCCC
T ss_pred             HHHHHHHHHCCCcEEEecCc
Confidence            77888889998887765443

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=92.16  E-value=0.18  Score=34.49  Aligned_cols=114  Identities=10%  Similarity=-0.041  Sum_probs=64.0

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCC---CCc-cccccCCCCCcccEEEeCCCCC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYK---TPD-GAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~---~~~-~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      +|-|+| .|.+|...+.-+...|++|++.+++ ++.+.+.+.++.......   ... .......  ...+.++.++...
T Consensus         3 kIGvIG-lG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   79 (178)
T d1pgja2           3 DVGVVG-LGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASL--KKPRKALILVQAG   79 (178)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHB--CSSCEEEECCCCS
T ss_pred             EEEEEe-ehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhc--ccceEEEEeecCc
Confidence            588999 9999999998888899999999875 677766555542111100   000 1111111  2345555555532


Q ss_pred             C-----ccccccCCCCCcEEEEeCCCchHHHHHHHhhheeccceeee
Q 045248          144 P-----WSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVP  185 (240)
Q Consensus       144 ~-----~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~  185 (240)
                      .     +......+.++..++..+.............+.-+++.+..
T Consensus        80 ~~~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ld  126 (178)
T d1pgja2          80 AATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLG  126 (178)
T ss_dssp             HHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEE
T ss_pred             chhhhhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEec
Confidence            2     23455567777777777655443333333334444444433

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=92.06  E-value=0.18  Score=33.36  Aligned_cols=34  Identities=9%  Similarity=0.094  Sum_probs=27.6

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCC--EEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNT--HVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~~~  100 (240)
                      ...+|.|+| +|.+|..++..+...|.  +++.++..
T Consensus         4 ~~~KI~IIG-aG~VG~~~A~~l~~~~~~~elvL~D~~   39 (146)
T d1ez4a1           4 NHQKVVLVG-DGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (146)
T ss_dssp             TBCEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhcCCCcEEEEeecc
Confidence            457899999 79999998888887774  78888854

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=91.97  E-value=0.14  Score=33.00  Aligned_cols=34  Identities=9%  Similarity=0.017  Sum_probs=30.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      +..++++|+| +|.+|+-+++.++.+|.+|..+.+
T Consensus        24 ~~p~~vvIiG-gG~IG~E~A~~~~~~G~~Vtive~   57 (125)
T d1ojta2          24 EVPGKLLIIG-GGIIGLEMGTVYSTLGSRLDVVEM   57 (125)
T ss_dssp             CCCSEEEEES-CSHHHHHHHHHHHHHTCEEEEECS
T ss_pred             ccCCeEEEEC-CCHHHHHHHHHhhcCCCEEEEEEe
Confidence            3458999999 899999999999999999999974

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=91.94  E-value=0.15  Score=35.42  Aligned_cols=85  Identities=12%  Similarity=-0.012  Sum_probs=53.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCcccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCC--C
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATG--I  143 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~--~  143 (240)
                      .+.+|.|+| .|.+|....++++.+|++|+..++..+....      ........ ...+     ...|++.-++.-  +
T Consensus        43 ~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~------~~~~~~~l-~ell-----~~sDii~i~~plt~~  109 (188)
T d1sc6a1          43 RGKKLGIIG-YGHIGTQLGILAESLGMYVYFYDIENKLPLG------NATQVQHL-SDLL-----NMSDVVSLHVPENPS  109 (188)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCCCCT------TCEECSCH-HHHH-----HHCSEEEECCCSSTT
T ss_pred             cceEEEEee-cccchhhhhhhcccccceEeeccccccchhh------hhhhhhhH-HHHH-----hhccceeecccCCcc
Confidence            688999999 9999999999999999999999864221100      00111110 1111     235777766652  1


Q ss_pred             C----ccccccCCCCCcEEEEeCC
Q 045248          144 P----WSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       144 ~----~~~~~~~l~~~G~iv~~g~  163 (240)
                      +    =...++.++++..++.++-
T Consensus       110 T~~li~~~~l~~mk~~a~lIN~aR  133 (188)
T d1sc6a1         110 TKNMMGAKEISLMKPGSLLINASR  133 (188)
T ss_dssp             TTTCBCHHHHHHSCTTEEEEECSC
T ss_pred             hhhhccHHHHhhCCCCCEEEEcCc
Confidence            1    2245667778777777654

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.91  E-value=0.087  Score=40.08  Aligned_cols=88  Identities=19%  Similarity=0.080  Sum_probs=48.9

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCcccHHHH----HhcCCC---EEEeCCCCccccccCCCCCcccEE
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGARNIEFV----KSLGAD---EVLDYKTPDGAALKSPSGRKYDAV  136 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~~~~~~~----~~~g~~---~v~~~~~~~~~~~~~~~~~~~d~v  136 (240)
                      .++++||-+| +| .|.++.. |...|+ +|++++.+...+.+    ++.+..   .++..+..   .+ ......+|+|
T Consensus        37 ~~~~~VLDlG-cG-tG~ls~~-aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~---~l-~~~~~~~D~i  109 (328)
T d1g6q1_          37 FKDKIVLDVG-CG-TGILSMF-AAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLE---DV-HLPFPKVDII  109 (328)
T ss_dssp             HTTCEEEEET-CT-TSHHHHH-HHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTT---TS-CCSSSCEEEE
T ss_pred             CCcCEEEEeC-CC-CCHHHHH-HHHhCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehh---hc-cCcccceeEE
Confidence            5889999998 45 4655554 445677 89999965433333    344432   22222111   11 1234679998


Q ss_pred             EeCC-C----C-CC----ccccccCCCCCcEEE
Q 045248          137 IHCA-T----G-IP----WSTFEPNLGTNGKVI  159 (240)
Q Consensus       137 ~d~~-g----~-~~----~~~~~~~l~~~G~iv  159 (240)
                      +-.. +    . ..    +...-+.|+|+|+++
T Consensus       110 ~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         110 ISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             EECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            7533 2    1 11    222235799999885

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.90  E-value=1.5  Score=32.81  Aligned_cols=88  Identities=8%  Similarity=0.081  Sum_probs=57.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHH-hCCC-EEEEEeCc-ccH-HH---HHhcCCCEEEeCCCCccccccCCCCCcccEEE
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAK-LGNT-HVTASCGA-RNI-EF---VKSLGADEVLDYKTPDGAALKSPSGRKYDAVI  137 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~-~~g~-~v~~~~~~-~~~-~~---~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~  137 (240)
                      +...++.|+| +|..+...++.+. .+.. +|.+..+. ++. ++   ++..+.....+.    ....     .+.|+|+
T Consensus       123 ~~~~~l~iiG-aG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~----~~a~-----~~aDiV~  192 (320)
T d1omoa_         123 KNSSVFGFIG-CGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQP----AEEA-----SRCDVLV  192 (320)
T ss_dssp             TTCCEEEEEC-CSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECC----HHHH-----TSSSEEE
T ss_pred             CCccEEEEec-CcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccch----hhhh-----ccccEEE
Confidence            4667899999 9999988777666 5666 77777764 443 22   234444433221    1111     3589999


Q ss_pred             eCCCCCC--ccccccCCCCCcEEEEeCCC
Q 045248          138 HCATGIP--WSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       138 d~~g~~~--~~~~~~~l~~~G~iv~~g~~  164 (240)
                      -++.+..  +.  .+.+++|-++..+|..
T Consensus       193 taT~s~~P~~~--~~~l~~G~hv~~iGs~  219 (320)
T d1omoa_         193 TTTPSRKPVVK--AEWVEEGTHINAIGAD  219 (320)
T ss_dssp             ECCCCSSCCBC--GGGCCTTCEEEECSCC
T ss_pred             EeccCcccccc--hhhcCCCCeEeecCCc
Confidence            9988633  43  2468999999999964

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.89  E-value=1  Score=29.49  Aligned_cols=33  Identities=18%  Similarity=0.161  Sum_probs=27.2

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCC--EEEEEeCcc
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNT--HVTASCGAR  101 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~~~~  101 (240)
                      +|.|+||+|.+|..+..++...+.  ++..++..+
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            588999779999999999998885  777777543

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=91.89  E-value=0.084  Score=38.03  Aligned_cols=31  Identities=13%  Similarity=0.111  Sum_probs=27.3

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNT-HVTASCGA  100 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~  100 (240)
                      +|+|+| +|..|+.+...++..|. +|+++...
T Consensus         2 ~V~IIG-aG~aGL~aA~~L~~~G~~~V~vlE~~   33 (347)
T d1b5qa1           2 RVIVVG-AGMSGISAAKRLSEAGITDLLILEAT   33 (347)
T ss_dssp             CEEEEC-CBHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEEC-CcHHHHHHHHHHHhCCCCcEEEEECC
Confidence            589999 89999999999999998 69888854

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=91.80  E-value=0.14  Score=34.41  Aligned_cols=90  Identities=12%  Similarity=0.061  Sum_probs=53.4

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCE-EEeCCCCccccccCCCCCcccEEEeCCCCCC--
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADE-VLDYKTPDGAALKSPSGRKYDAVIHCATGIP--  144 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~--  144 (240)
                      +|+|+| +|.+|.+....+...|.+|..+++. ++.+..+..+.+. .....   ...-....-..+|++|-++-...  
T Consensus         2 kI~IiG-aG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~D~iii~vka~~~~   77 (167)
T d1ks9a2           2 KITVLG-CGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNES---LTANDPDFLATSDLLLVTLKAWQVS   77 (167)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEE---EEESCHHHHHTCSEEEECSCGGGHH
T ss_pred             EEEEEC-cCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccc---cccchhhhhcccceEEEeecccchH
Confidence            689999 7999999998888899999999975 3222111111110 00000   00000011146899999998644  


Q ss_pred             --ccccccCCCCCcEEEEeC
Q 045248          145 --WSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       145 --~~~~~~~l~~~G~iv~~g  162 (240)
                        +..+...+.++..++.+.
T Consensus        78 ~~~~~l~~~~~~~~~Iv~~q   97 (167)
T d1ks9a2          78 DAVKSLASTLPVTTPILLIH   97 (167)
T ss_dssp             HHHHHHHTTSCTTSCEEEEC
T ss_pred             HHHHhhccccCcccEEeecc
Confidence              334445666777777664

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=91.72  E-value=0.099  Score=36.27  Aligned_cols=38  Identities=18%  Similarity=0.064  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHH
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIE  104 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~  104 (240)
                      .=++|.|+| +|-+|...+.++...|++|+..+.+ +..+
T Consensus         3 ~I~~vaViG-aG~mG~~iA~~~a~~G~~V~l~D~~~~~l~   41 (186)
T d1wdka3           3 DVKQAAVLG-AGIMGGGIAYQSASKGTPILMKDINEHGIE   41 (186)
T ss_dssp             CCSSEEEEC-CHHHHHHHHHHHHHTTCCEEEECSSHHHHH
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHhCCCeEEEEECCHHHHh
Confidence            346799999 8999999998888999999999964 4433

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=91.59  E-value=0.11  Score=37.41  Aligned_cols=96  Identities=18%  Similarity=0.060  Sum_probs=59.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCC--CEEEEEeCc-ccHHHH----HhcCCCEEEeCCCCc-cccc----c-CCCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGN--THVTASCGA-RNIEFV----KSLGADEVLDYKTPD-GAAL----K-SPSGR  131 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g--~~v~~~~~~-~~~~~~----~~~g~~~v~~~~~~~-~~~~----~-~~~~~  131 (240)
                      .+.++||-+|  ..+|..++.+|..++  .+|+++..+ +..+.+    ++.|...-+.....+ ...+    . .....
T Consensus        58 ~~~k~iLEiG--T~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~  135 (227)
T d1susa1          58 INAKNTMEIG--VYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHG  135 (227)
T ss_dssp             HTCCEEEEEC--CGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTT
T ss_pred             cCCCcEEEec--chhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCC
Confidence            4558999998  557777888888764  599999964 444444    456654323222222 1111    1 11245


Q ss_pred             cccEEEeCCC-CC---CccccccCCCCCcEEEEeC
Q 045248          132 KYDAVIHCAT-GI---PWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       132 ~~d~v~d~~g-~~---~~~~~~~~l~~~G~iv~~g  162 (240)
                      .||.||=-.. ..   .++.++++|++||.++.=.
T Consensus       136 ~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~DN  170 (227)
T d1susa1         136 SYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDN  170 (227)
T ss_dssp             CBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEET
T ss_pred             ceeEEEeccchhhhHHHHHHHHhhcCCCcEEEEcc
Confidence            7999864433 32   2778899999999887543

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=91.44  E-value=0.24  Score=33.78  Aligned_cols=95  Identities=14%  Similarity=0.138  Sum_probs=53.3

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCC---CEEEEEeCc---ccHHHHHhc----CC--CEEEeCCCCc----cccc---c---
Q 045248           69 NILVTAASGGVGHYAVQLAKLGN---THVTASCGA---RNIEFVKSL----GA--DEVLDYKTPD----GAAL---K---  126 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g---~~v~~~~~~---~~~~~~~~~----g~--~~v~~~~~~~----~~~~---~---  126 (240)
                      +|.|.| -|-+|.++.+.+..+.   .+|+++-..   +...++-++    |.  ..+....+..    -..+   .   
T Consensus         2 kIgING-fGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~I~~~~~~~   80 (172)
T d1rm4a1           2 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRN   80 (172)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCSC
T ss_pred             EEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEEcCCCCHHHHHHHHhcCcccccccceeEecCCcceEECCEEEEEecCCC
Confidence            588999 9999999998766443   467776643   334444322    11  1111111100    0000   0   


Q ss_pred             --CC--CCCcccEEEeCCCC-CCccccccCCCCCcEEEEeCCC
Q 045248          127 --SP--SGRKYDAVIHCATG-IPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       127 --~~--~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                        +.  ...++|+|+||+|. .....+...|..|-+-|.+..+
T Consensus        81 p~~i~W~~~gvDiViEcTG~f~~~~~~~~hl~~GakkViiSAP  123 (172)
T d1rm4a1          81 PVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAP  123 (172)
T ss_dssp             GGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSCEEESSC
T ss_pred             hHHCChhhcCCCEEEecCceEccHHHHHHHHhcCCceEEeecc
Confidence              11  11369999999997 4466666778777655555543

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=91.43  E-value=0.023  Score=40.86  Aligned_cols=93  Identities=12%  Similarity=0.053  Sum_probs=54.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHh---CCCEEEEEeC-cccHHHHHh----cCCCEEEeCCCCccccccCCCCCcccEE
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKL---GNTHVTASCG-ARNIEFVKS----LGADEVLDYKTPDGAALKSPSGRKYDAV  136 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~---~g~~v~~~~~-~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~~~~~d~v  136 (240)
                      +++.+||=+|  .|.|..+..+++.   .+++|++++. ++-.+.+++    .+....+.....+.   .......+|++
T Consensus        38 ~~~~~vLDlG--CGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~---~~~~~~~~d~i  112 (225)
T d1im8a_          38 TADSNVYDLG--CSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDI---RHVEIKNASMV  112 (225)
T ss_dssp             CTTCEEEEES--CTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCT---TTCCCCSEEEE
T ss_pred             CCCCEEEEec--cchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchh---hccccccceee
Confidence            6888999998  3456666666664   5779999995 465666643    33222221111111   11223456666


Q ss_pred             EeCCC----C-----CCccccccCCCCCcEEEEeC
Q 045248          137 IHCAT----G-----IPWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       137 ~d~~g----~-----~~~~~~~~~l~~~G~iv~~g  162 (240)
                      +-+..    +     ..+..+.+.|+|+|.++...
T Consensus       113 ~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~  147 (225)
T d1im8a_         113 ILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE  147 (225)
T ss_dssp             EEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeeeccccChhhHHHHHHHHHHhCCCCceeeccc
Confidence            54433    1     12667778899999998764

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.35  E-value=0.038  Score=39.51  Aligned_cols=94  Identities=15%  Similarity=0.061  Sum_probs=58.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHhc----CCCEEEeCCCCccccccCCCCCcccEEEeC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSL----GADEVLDYKTPDGAALKSPSGRKYDAVIHC  139 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~  139 (240)
                      .++.+||=+|  +|.|..+..+++..+.+|++++- ++-.+.+++.    +...+ .+...+..... .....||+|+..
T Consensus        59 ~~~~~vLDiG--cG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~-~f~~~d~~~~~-~~~~~fD~I~~~  134 (222)
T d2ex4a1          59 TGTSCALDCG--AGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVR-NYFCCGLQDFT-PEPDSYDVIWIQ  134 (222)
T ss_dssp             CCCSEEEEET--CTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEE-EEEECCGGGCC-CCSSCEEEEEEE
T ss_pred             CCCCEEEEec--cCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccccc-ccccccccccc-cccccccccccc
Confidence            6778899888  45677777777777779999995 4666766543    22211 11111211111 234679999864


Q ss_pred             CC-----C----CCccccccCCCCCcEEEEeC
Q 045248          140 AT-----G----IPWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       140 ~g-----~----~~~~~~~~~l~~~G~iv~~g  162 (240)
                      -.     .    ..+..+.+.|+++|.++...
T Consensus       135 ~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~  166 (222)
T d2ex4a1         135 WVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKD  166 (222)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccchhhhhhhHHHHHHHhcCCcceEEEEE
Confidence            43     1    12556677899999988764

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=91.33  E-value=0.093  Score=38.56  Aligned_cols=31  Identities=16%  Similarity=0.111  Sum_probs=27.9

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      +|+|+| +|..|+.+...++..|.+|+++...
T Consensus         2 ~V~IIG-aG~aGL~aA~~L~~~G~~V~vlE~~   32 (347)
T d2ivda1           2 NVAVVG-GGISGLAVAHHLRSRGTDAVLLESS   32 (347)
T ss_dssp             CEEEEC-CBHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             eEEEEC-CCHHHHHHHHHHHhCCCCEEEEecC
Confidence            589999 8999999999999999999998853

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=91.32  E-value=0.18  Score=37.20  Aligned_cols=72  Identities=14%  Similarity=0.117  Sum_probs=42.3

Q ss_pred             EEEEcCCchHHHHHHHHHHhCCC-EEEEEeC---cccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCC
Q 045248           70 ILVTAASGGVGHYAVQLAKLGNT-HVTASCG---ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCAT  141 (240)
Q Consensus        70 vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~---~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g  141 (240)
                      |||+||+|=+|..++..+...|. +|+++++   ..+.....+.-.....+..+.............++.++-..+
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~aa   77 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGA   77 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHHHTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCS
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchhhcccccchhhhccchHHHHHHhhhhcccchhhhhhhcc
Confidence            79999999999999988888897 7888763   233444444443333332211111122222345667766554

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=91.32  E-value=0.061  Score=37.25  Aligned_cols=34  Identities=24%  Similarity=0.273  Sum_probs=29.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      .++..|+|+| +|+.|+.+...+...|.+|+.+.+
T Consensus         3 ~k~~dVvIIG-GGpaGl~AA~~~ar~g~~v~iie~   36 (190)
T d1trba1           3 TKHSKLLILG-SGPAGYTAAVYAARANLQPVLITG   36 (190)
T ss_dssp             EEEEEEEEEC-CSHHHHHHHHHHHTTTCCCEEECC
T ss_pred             CCCCcEEEEC-CCHHHHHHHHHHHHcCCceEEEEe
Confidence            4567899999 899999999999999999888863

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=91.13  E-value=1.3  Score=29.24  Aligned_cols=35  Identities=20%  Similarity=0.158  Sum_probs=28.4

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~  100 (240)
                      ++..+|.|+| +|.+|..+..++...+. +++..+..
T Consensus         5 ~k~~KI~IIG-aG~VG~~lA~~l~~~~~~el~L~D~~   40 (154)
T d1pzga1           5 QRRKKVAMIG-SGMIGGTMGYLCALRELADVVLYDVV   40 (154)
T ss_dssp             SCCCEEEEEC-CSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             cCCCcEEEEC-CCHHHHHHHHHHHhCCCceEEEEEec
Confidence            5778999999 69999888888887776 88777743

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=91.01  E-value=0.06  Score=39.78  Aligned_cols=29  Identities=24%  Similarity=0.161  Sum_probs=23.9

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEe
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASC   98 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~   98 (240)
                      +|||+||+|-+|..++..+...|. ++++.
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g~-~v~~~   30 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVGN-LIALD   30 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTSE-EEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC-EEEEE
Confidence            699999999999999998888775 44444

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.92  E-value=0.04  Score=38.54  Aligned_cols=94  Identities=21%  Similarity=0.220  Sum_probs=54.9

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH----hcCCC----EEEeCCCCccccc
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK----SLGAD----EVLDYKTPDGAAL  125 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~----~~g~~----~v~~~~~~~~~~~  125 (240)
                      +....     .++++||=+|  +|.|..++.+++ .+.+|++++-+ ...+.++    ..+..    .++..+.     .
T Consensus        46 ~~l~~-----~~~~~VLDiG--cG~G~~~~~la~-~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~-----~  112 (194)
T d1dusa_          46 ENVVV-----DKDDDILDLG--CGYGVIGIALAD-EVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL-----Y  112 (194)
T ss_dssp             HHCCC-----CTTCEEEEET--CTTSHHHHHHGG-GSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECST-----T
T ss_pred             HhCCc-----CCCCeEEEEe--ecCChhHHHHHh-hccccceeeeccccchhHHHHHHHhCCccceEEEEEcch-----h
Confidence            55566     7899999888  345566666665 45699999854 5455553    33321    1111111     1


Q ss_pred             cCCCCCcccEEEeCC----CCC----CccccccCCCCCcEEEEe
Q 045248          126 KSPSGRKYDAVIHCA----TGI----PWSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       126 ~~~~~~~~d~v~d~~----g~~----~~~~~~~~l~~~G~iv~~  161 (240)
                      +......||+|+-..    +.+    .+..+.+.|+++|+++.+
T Consensus       113 ~~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~  156 (194)
T d1dusa_         113 ENVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVV  156 (194)
T ss_dssp             TTCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEE
Confidence            122346799998532    211    155667789999987543

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=90.89  E-value=0.11  Score=35.39  Aligned_cols=30  Identities=17%  Similarity=0.176  Sum_probs=27.1

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      .|+|+| +|+.|+.+...+...|.+|..+.+
T Consensus         3 DViIIG-gGpaGl~AAi~aar~G~~v~iie~   32 (184)
T d1fl2a1           3 DVLIVG-SGPAGAAAAIYSARKGIRTGLMGE   32 (184)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTTTCCEEEECS
T ss_pred             cEEEEC-cCHHHHHHHHHHHHcCCeEEEEEE
Confidence            588999 899999999999999999888874

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.82  E-value=0.18  Score=36.67  Aligned_cols=30  Identities=20%  Similarity=0.153  Sum_probs=26.8

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCC-EEEEEeC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNT-HVTASCG   99 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~   99 (240)
                      +|+|+| +|..|+.+...++..|. +|.++.+
T Consensus         3 ~V~IvG-aG~aGl~~A~~L~~~Gi~~V~V~Er   33 (288)
T d3c96a1           3 DILIAG-AGIGGLSCALALHQAGIGKVTLLES   33 (288)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred             EEEEEC-cCHHHHHHHHHHHhCCCCeEEEEeC
Confidence            689999 89999999999999997 8877774

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.74  E-value=0.11  Score=34.51  Aligned_cols=88  Identities=18%  Similarity=0.179  Sum_probs=52.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCC---CEEEEEeCcccHHHHHhcCCCEEEeCCCCc--cccccCCCCCcccEEEeCCCC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGN---THVTASCGARNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g---~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      -+|.|+||+|-+|+-+++++..++   .++..+.+++.      .|.  -+.+...+  ....+...-.+.|++|-+.+.
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~------~Gk--~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~   74 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAES------AGQ--RMGFAESSLRVGDVDSFDFSSVGLAFFAAAA   74 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTT------TTC--EEEETTEEEECEEGGGCCGGGCSEEEECSCH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeeccc------CCc--ceeeccccchhccchhhhhccceEEEecCCc
Confidence            468999999999999999997443   36666654421      121  11111111  111222233568999999886


Q ss_pred             CC-ccccccCCCCCcEEEEeCC
Q 045248          143 IP-WSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       143 ~~-~~~~~~~l~~~G~iv~~g~  163 (240)
                      .. ....-+.+.++.+++..+.
T Consensus        75 ~~s~~~~~~~~~~g~~VID~Ss   96 (144)
T d2hjsa1          75 EVSRAHAERARAAGCSVIDLSG   96 (144)
T ss_dssp             HHHHHHHHHHHHTTCEEEETTC
T ss_pred             chhhhhccccccCCceEEeech
Confidence            44 3344455666777777663

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=90.72  E-value=0.035  Score=43.27  Aligned_cols=88  Identities=14%  Similarity=0.016  Sum_probs=55.7

Q ss_pred             cCCchHHHHHHHHHHhCCC-EEEEEeC-cccHHHHHh----cCCCEEEeC--------------CCCccccccCCCCCcc
Q 045248           74 AASGGVGHYAVQLAKLGNT-HVTASCG-ARNIEFVKS----LGADEVLDY--------------KTPDGAALKSPSGRKY  133 (240)
Q Consensus        74 G~~g~vG~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~----~g~~~v~~~--------------~~~~~~~~~~~~~~~~  133 (240)
                      -+.++.|...+++++..|+ +|++.+- ++..+.+++    .+.......              ...+........++.|
T Consensus        51 D~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~~~~~f  130 (375)
T d2dula1          51 DALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAERHRYF  130 (375)
T ss_dssp             ESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHSTTCE
T ss_pred             EcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHhhcCcC
Confidence            3478889999999998888 8888884 455555542    232211100              0011111112235679


Q ss_pred             cEE-EeCCCCCC--ccccccCCCCCcEEEEe
Q 045248          134 DAV-IHCATGIP--WSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       134 d~v-~d~~g~~~--~~~~~~~l~~~G~iv~~  161 (240)
                      |+| +|.-|.+.  ++.++++++.+|.+...
T Consensus       131 DvIDiDPfGs~~pfldsAi~a~~~~Gll~vT  161 (375)
T d2dula1         131 HFIDLDPFGSPMEFLDTALRSAKRRGILGVT  161 (375)
T ss_dssp             EEEEECCSSCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             CcccCCCCCCcHHHHHHHHHHhccCCEEEEE
Confidence            976 99999754  89999999999876544

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.69  E-value=0.12  Score=36.84  Aligned_cols=96  Identities=17%  Similarity=0.084  Sum_probs=60.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCC--CEEEEEeCc-ccHHH----HHhcCCCEEEeCCCCcc-----ccccCCCCCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGN--THVTASCGA-RNIEF----VKSLGADEVLDYKTPDG-----AALKSPSGRK  132 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g--~~v~~~~~~-~~~~~----~~~~g~~~v~~~~~~~~-----~~~~~~~~~~  132 (240)
                      .+.++||-+|  .+.|..++.+|....  .+|++++.+ +..+.    .++.|....+.....+.     ..........
T Consensus        58 ~~~k~vLEiG--t~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~  135 (219)
T d2avda1          58 IQAKKALDLG--TFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGT  135 (219)
T ss_dssp             TTCCEEEEEC--CTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTC
T ss_pred             cCCCeEEEEe--chhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCC
Confidence            4568999998  456777888888764  599999954 44444    34566433332222221     1122223457


Q ss_pred             ccEEEeCCCCCC----ccccccCCCCCcEEEEeC
Q 045248          133 YDAVIHCATGIP----WSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       133 ~d~v~d~~g~~~----~~~~~~~l~~~G~iv~~g  162 (240)
                      ||.||--.....    ++.+++.|++||.++.=.
T Consensus       136 fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~Dn  169 (219)
T d2avda1         136 FDVAVVDADKENCSAYYERCLQLLRPGGILAVLR  169 (219)
T ss_dssp             EEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEeC
Confidence            999876554322    678889999999987644

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.61  E-value=1.5  Score=29.12  Aligned_cols=34  Identities=18%  Similarity=0.118  Sum_probs=27.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCC--EEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNT--HVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~~~  100 (240)
                      ...+|.|+| +|.+|..+...+...|.  +++.++..
T Consensus        18 ~~~KI~IIG-aG~VG~~~A~~l~~~~l~~elvL~D~~   53 (159)
T d2ldxa1          18 SRCKITVVG-VGDVGMACAISILLKGLADELALVDAD   53 (159)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            345799999 79999999988888886  67777744

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=90.58  E-value=0.14  Score=36.88  Aligned_cols=31  Identities=19%  Similarity=0.132  Sum_probs=27.3

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .|+|+| +|+.|+.+...+...|.+|+.+++.
T Consensus         4 DViIIG-aG~aGl~aA~~la~~G~~V~liEk~   34 (251)
T d2i0za1           4 DVIVIG-GGPSGLMAAIGAAEEGANVLLLDKG   34 (251)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            488999 8999999888888899999999853

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=90.56  E-value=0.09  Score=38.65  Aligned_cols=90  Identities=11%  Similarity=0.101  Sum_probs=54.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHH----hcCCC---EEEeCCCCccccccCCCCCcccEE
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVK----SLGAD---EVLDYKTPDGAALKSPSGRKYDAV  136 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~----~~g~~---~v~~~~~~~~~~~~~~~~~~~d~v  136 (240)
                      ++|++||-.+  .|+|...+.+|+.-+++|++++. ++..+.++    ..|..   .++..+.   .  .......+|.|
T Consensus       106 ~~g~~VlD~~--aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~---~--~~~~~~~~D~I  178 (260)
T d2frna1         106 KPDELVVDMF--AGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN---R--DFPGENIADRI  178 (260)
T ss_dssp             CTTCEEEETT--CTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT---T--TCCCCSCEEEE
T ss_pred             CCccEEEECc--ceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcch---H--HhccCCCCCEE
Confidence            7899998876  34566667777764469999995 46655553    34532   2332221   1  11223568866


Q ss_pred             Ee-CCCC--CCccccccCCCCCcEEEEe
Q 045248          137 IH-CATG--IPWSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       137 ~d-~~g~--~~~~~~~~~l~~~G~iv~~  161 (240)
                      += --..  ..+..+++.+++||.+...
T Consensus       179 i~~~p~~~~~~l~~a~~~l~~gG~lh~~  206 (260)
T d2frna1         179 LMGYVVRTHEFIPKALSIAKDGAIIHYH  206 (260)
T ss_dssp             EECCCSSGGGGHHHHHHHEEEEEEEEEE
T ss_pred             EECCCCchHHHHHHHHhhcCCCCEEEEE
Confidence            53 2222  2366788889999987544

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.22  E-value=0.12  Score=36.32  Aligned_cols=32  Identities=16%  Similarity=0.066  Sum_probs=28.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .-|+|+| +|+.|+.+...+...|.+|+++...
T Consensus         4 yDvvVIG-gGpaGl~aA~~aa~~G~kV~vie~~   35 (221)
T d1dxla1           4 NDVVIIG-GGPGGYVAAIKAAQLGFKTTCIEKR   35 (221)
T ss_dssp             CCEEEEC-CSHHHHHHHHHHHHHTCCEEEEECS
T ss_pred             CCEEEEC-CCHHHHHHHHHHHHCCCcEEEEEec
Confidence            4588999 8999999999999999999999853

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=90.13  E-value=0.21  Score=33.58  Aligned_cols=33  Identities=24%  Similarity=0.300  Sum_probs=27.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCC--EEEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNT--HVTASCG   99 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~~   99 (240)
                      .|++|+|+| +|..|+.+++.++..+.  +|+.+.+
T Consensus         1 ~gkrivIvG-gG~~G~e~A~~l~~~~~~~~Vtlie~   35 (186)
T d1fcda1           1 AGRKVVVVG-GGTGGATAAKYIKLADPSIEVTLIEP   35 (186)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             CCCcEEEEC-ccHHHHHHHHHHHHcCCCCcEEEEEC
Confidence            378999999 89999999888887764  7888774

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.11  E-value=0.23  Score=32.60  Aligned_cols=31  Identities=13%  Similarity=0.014  Sum_probs=23.5

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCC--EEEEEeCc
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNT--HVTASCGA  100 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~~~  100 (240)
                      +|.|+| +|.+|..+...+...+.  ++...+.+
T Consensus         2 KI~IIG-aG~VG~~~a~~l~~~~l~~el~L~Di~   34 (140)
T d1a5za1           2 KIGIVG-LGRVGSSTAFALLMKGFAREMVLIDVD   34 (140)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             EEEEEC-cCHHHHHHHHHHHhCCCCCEEEEEecc
Confidence            578999 69999888777776664  77777744

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.01  E-value=0.42  Score=31.77  Aligned_cols=34  Identities=12%  Similarity=0.060  Sum_probs=28.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCG   99 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~   99 (240)
                      .-+++|+|+| +|.+|.=++..+..+|+ .|+.+.+
T Consensus        43 ~~~~kVvVIG-GGdtA~D~A~~a~r~GA~~V~vi~r   77 (153)
T d1gtea3          43 SIRGAVIVLG-AGDTAFDCATSALRCGARRVFLVFR   77 (153)
T ss_dssp             CCCSEEEEEC-SSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             cCCCEEEEEC-CChhHHHHHHHHHHcCCcceeEEEe
Confidence            4567899999 89999999999999999 6777764

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=89.86  E-value=0.89  Score=32.06  Aligned_cols=90  Identities=13%  Similarity=0.041  Sum_probs=55.8

Q ss_pred             CeEEEEcCCchHHH-HHHHHHHhC-CCEEEEEeC-c-cc-HHHHHhcCCC--EEEeCCCCccccccCCCCCcccEEEeCC
Q 045248           68 KNILVTAASGGVGH-YAVQLAKLG-NTHVTASCG-A-RN-IEFVKSLGAD--EVLDYKTPDGAALKSPSGRKYDAVIHCA  140 (240)
Q Consensus        68 ~~vlV~G~~g~vG~-~~~~~a~~~-g~~v~~~~~-~-~~-~~~~~~~g~~--~v~~~~~~~~~~~~~~~~~~~d~v~d~~  140 (240)
                      =+|.|+| +|.+|. ..+...+.. ++++++++. + ++ .+.++++|..  .+..+++.  ..  ......+|+|+-++
T Consensus        34 iriaiIG-~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~--~e--ll~~~~iD~V~I~t  108 (221)
T d1h6da1          34 FGYAIVG-LGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNF--DK--IAKDPKIDAVYIIL  108 (221)
T ss_dssp             EEEEEEC-CSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSG--GG--GGGCTTCCEEEECS
T ss_pred             EEEEEEc-CcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCch--hh--hcccccceeeeecc
Confidence            4789999 899996 355555544 678998874 3 44 4455677643  23333322  11  12335799999888


Q ss_pred             CCCC-ccccccCCCCCcEEEEeCC
Q 045248          141 TGIP-WSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       141 g~~~-~~~~~~~l~~~G~iv~~g~  163 (240)
                      .... ...+.++++. |+=+.+..
T Consensus       109 p~~~H~~~~~~al~~-gk~v~~EK  131 (221)
T d1h6da1         109 PNSLHAEFAIRAFKA-GKHVMCEK  131 (221)
T ss_dssp             CGGGHHHHHHHHHHT-TCEEEECS
T ss_pred             chhhhhhHHHHhhhc-chhhhcCC
Confidence            8755 6667777765 56666664

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=89.86  E-value=0.79  Score=35.41  Aligned_cols=51  Identities=18%  Similarity=0.136  Sum_probs=39.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC---c-ccHHHHHhcCCCEEEe
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG---A-RNIEFVKSLGADEVLD  116 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~---~-~~~~~~~~~g~~~v~~  116 (240)
                      +++.+ +|...+|+.|.++..+++.+|.+++++.+   + .+.+.++.+|++.+..
T Consensus       142 ~~g~~-VVeaSSGN~GiAlA~~aa~lGik~~Iv~P~~~~~~K~~~ira~GAeVi~~  196 (382)
T d1wkva1         142 EKGSL-VADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVD  196 (382)
T ss_dssp             CTTCE-EEEECCHHHHHHHHHHHHHTTCEEEEEEETTSCHHHHHHHHHTTCEEEEE
T ss_pred             CCCCE-EEEeCCcHHHHHHHHHHHHcCCCEEEEeeccccccccccccccCcceeec
Confidence            56655 45565899999999999999997666663   2 5777889999976654

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.80  E-value=0.17  Score=35.86  Aligned_cols=33  Identities=12%  Similarity=0.083  Sum_probs=28.4

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .--|+|+| +|..|+.++..+...|.+|.++.+.
T Consensus         5 ~yDviViG-aG~~Gl~~A~~La~~G~~V~vlE~~   37 (297)
T d2bcgg1           5 DYDVIVLG-TGITECILSGLLSVDGKKVLHIDKQ   37 (297)
T ss_dssp             BCSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             cCCEEEEC-cCHHHHHHHHHHHHCCCCEEEEcCC
Confidence            34588999 8999999998888899999999964

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=89.74  E-value=0.17  Score=36.55  Aligned_cols=32  Identities=13%  Similarity=0.148  Sum_probs=28.2

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ..|+|+| +|+.|+.+...+...|.+|.++++.
T Consensus         5 ~DViIIG-aG~aGl~aA~~la~~G~~V~vlEk~   36 (253)
T d2gqfa1           5 SENIIIG-AGAAGLFCAAQLAKLGKSVTVFDNG   36 (253)
T ss_dssp             CSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CcEEEEC-cCHHHHHHHHHHHHCCCcEEEEecC
Confidence            4589999 8999999988888899999999964

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=89.55  E-value=0.31  Score=32.03  Aligned_cols=32  Identities=19%  Similarity=0.103  Sum_probs=25.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCC--EEEEEeCc
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNT--HVTASCGA  100 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~~~  100 (240)
                      .+|.|+| +|.+|..+...+...+.  +++.++..
T Consensus         2 ~KI~IIG-aG~VG~~~a~~l~~~~l~~el~L~D~~   35 (142)
T d1y6ja1           2 SKVAIIG-AGFVGASAAFTMALRQTANELVLIDVF   35 (142)
T ss_dssp             CCEEEEC-CSHHHHHHHHHHHHTTCSSEEEEECCC
T ss_pred             CeEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEecc
Confidence            4688999 69999998888887775  78887743

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=89.19  E-value=0.49  Score=30.98  Aligned_cols=32  Identities=16%  Similarity=0.094  Sum_probs=25.1

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA  100 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~  100 (240)
                      .+|.|+| +|.+|..+..++...+. .++..+..
T Consensus         2 ~KI~IIG-aG~VG~~~A~~l~~~~l~dl~l~D~~   34 (142)
T d1uxja1           2 KKISIIG-AGFVGSTTAHWLAAKELGDIVLLDIV   34 (142)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECSS
T ss_pred             CeEEEEC-CCHHHHHHHHHHHhCCcceEEEEeec
Confidence            4788999 79999888777776676 88777754

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=89.14  E-value=0.2  Score=35.11  Aligned_cols=30  Identities=10%  Similarity=0.116  Sum_probs=27.2

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      -|+|+| +|+.|+.+...|..+|.+|..+.+
T Consensus         4 DvvVIG-~G~aG~~aA~~a~~~G~kV~iiE~   33 (217)
T d1gesa1           4 DYIAIG-GGSGGIASINRAAMYGQKCALIEA   33 (217)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTTTCCEEEEES
T ss_pred             CEEEEC-CCHHHHHHHHHHHHCCCEEEEEec
Confidence            478999 899999999999999999998875

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=89.12  E-value=2.1  Score=28.47  Aligned_cols=35  Identities=14%  Similarity=-0.024  Sum_probs=29.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCC--EEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNT--HVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~~~  100 (240)
                      .+..+|.|+| +|.+|..+...+...|.  +++.++..
T Consensus        18 ~~~~KV~IIG-aG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          18 VPNNKITVVG-VGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             CCSSEEEEEC-CSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCCeEEEEC-CCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            4567999999 79999999999998886  77777754

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=89.02  E-value=1.9  Score=27.98  Aligned_cols=31  Identities=26%  Similarity=0.134  Sum_probs=25.5

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCC--EEEEEeC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNT--HVTASCG   99 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~~   99 (240)
                      +|.|+|++|.+|..+...+...+.  +++..+-
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            688999889999999888888876  6666663

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=88.95  E-value=0.22  Score=37.22  Aligned_cols=34  Identities=24%  Similarity=0.229  Sum_probs=29.4

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      +.-.|+|+| +|..|++++..++..|.+|++.+..
T Consensus         6 ~~~dV~IIG-AG~sGl~~a~~L~~~G~~v~i~Ek~   39 (298)
T d1w4xa1           6 EEVDVLVVG-AGFSGLYALYRLRELGRSVHVIETA   39 (298)
T ss_dssp             SEEEEEEEC-CSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCEEEEC-ccHHHHHHHHHHHhCCCCEEEEEcC
Confidence            445789999 8999999999999999988888853

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=88.87  E-value=0.027  Score=41.49  Aligned_cols=94  Identities=17%  Similarity=0.125  Sum_probs=56.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCC-CEEEEEeCcccHH----HHHhcCCCEEEeCCCCccccccCCCCCcccEEEeC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGN-THVTASCGARNIE----FVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHC  139 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g-~~v~~~~~~~~~~----~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~  139 (240)
                      .+..+||=+|  ||.|..+..+++.+. .++++++-++-.+    .+++.|....+.....+  ... .-+.++|+++-.
T Consensus        80 ~~~~~vlDvG--~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d--~~~-~~p~~~D~v~~~  154 (256)
T d1qzza2          80 SAVRHVLDVG--GGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGD--FFK-PLPVTADVVLLS  154 (256)
T ss_dssp             TTCCEEEEET--CTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECC--TTS-CCSCCEEEEEEE
T ss_pred             ccCCEEEEEC--CCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeee--ccc-cccccchhhhcc
Confidence            5667888887  567889999999884 5999888543333    33444532212111111  111 123468888643


Q ss_pred             CC-----CC----CccccccCCCCCcEEEEeCC
Q 045248          140 AT-----GI----PWSTFEPNLGTNGKVIDITP  163 (240)
Q Consensus       140 ~g-----~~----~~~~~~~~l~~~G~iv~~g~  163 (240)
                      --     .+    .+..+.+.|+|+|+++.+..
T Consensus       155 ~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~  187 (256)
T d1qzza2         155 FVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  187 (256)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ccccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence            22     11    25667788999999988764

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=88.87  E-value=0.71  Score=32.07  Aligned_cols=90  Identities=16%  Similarity=0.060  Sum_probs=45.8

Q ss_pred             CCChhhhhhhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHHHHHhcC
Q 045248           33 EVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNIEFVKSLG  110 (240)
Q Consensus        33 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g  110 (240)
                      .+.+||-.+-+.-+...+..+....++      .|++||=.| +| .|..++. +..+|+ +|++++-+ +..+.+++.-
T Consensus        21 ~~~leQy~T~~~~a~~~~~~~~~~~dl------~Gk~VLDlG-cG-tG~l~i~-a~~~ga~~V~~vDid~~a~~~ar~N~   91 (197)
T d1ne2a_          21 KNYLEQYPTDASTAAYFLIEIYNDGNI------GGRSVIDAG-TG-NGILACG-SYLLGAESVTAFDIDPDAIETAKRNC   91 (197)
T ss_dssp             ------CCCCHHHHHHHHHHHHHHTSS------BTSEEEEET-CT-TCHHHHH-HHHTTBSEEEEEESCHHHHHHHHHHC
T ss_pred             CcccccCCCCHHHHHHHHHHHHHcCCC------CCCEEEEeC-CC-CcHHHHH-HHHcCCCcccccccCHHHHHHHHHcc
Confidence            345666555422222222334355665      789999888 44 3444443 445676 89999954 6677776543


Q ss_pred             C-CEEEeCCCCccccccCCCCCcccEEEe
Q 045248          111 A-DEVLDYKTPDGAALKSPSGRKYDAVIH  138 (240)
Q Consensus       111 ~-~~v~~~~~~~~~~~~~~~~~~~d~v~d  138 (240)
                      . ..++..+      +... .+.||+|+-
T Consensus        92 ~~~~~~~~D------~~~l-~~~fD~Vi~  113 (197)
T d1ne2a_          92 GGVNFMVAD------VSEI-SGKYDTWIM  113 (197)
T ss_dssp             TTSEEEECC------GGGC-CCCEEEEEE
T ss_pred             ccccEEEEe------hhhc-CCcceEEEe
Confidence            2 2333211      1111 256888883

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=88.81  E-value=0.12  Score=34.39  Aligned_cols=32  Identities=16%  Similarity=0.060  Sum_probs=23.4

Q ss_pred             eEEEEcCCchHHHHHHHH-HHhCC--C-EEEEEeCc
Q 045248           69 NILVTAASGGVGHYAVQL-AKLGN--T-HVTASCGA  100 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~-a~~~g--~-~v~~~~~~  100 (240)
                      +|.|+||+|-+|+-.+++ +.+..  . +++...++
T Consensus         3 kVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss   38 (146)
T d1t4ba1           3 NVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTS   38 (146)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS
T ss_pred             EEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecc
Confidence            689999999999999974 54433  2 66666544

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=88.77  E-value=0.23  Score=35.89  Aligned_cols=33  Identities=21%  Similarity=0.250  Sum_probs=29.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeC
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCG   99 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~   99 (240)
                      .+.+|+|+| +|++|..++..+...|. ++..++.
T Consensus        29 ~~~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~   62 (247)
T d1jw9b_          29 KDSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDF   62 (247)
T ss_dssp             HHCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             hCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECC
Confidence            457999999 99999999999999999 7777764

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.62  E-value=0.21  Score=37.20  Aligned_cols=31  Identities=19%  Similarity=0.124  Sum_probs=27.6

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .++|+| +|..|+.++..++..|.+|.++...
T Consensus         3 dv~IIG-aG~sGl~~A~~L~~~g~~V~iiEk~   33 (298)
T d1i8ta1           3 DYIIVG-SGLFGAVCANELKKLNKKVLVIEKR   33 (298)
T ss_dssp             EEEEEC-CSHHHHHHHHHHGGGTCCEEEECSS
T ss_pred             cEEEEC-CcHHHHHHHHHHHhCCCcEEEEECC
Confidence            589999 8999999999998889999999854

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=88.61  E-value=0.1  Score=38.65  Aligned_cols=93  Identities=19%  Similarity=0.248  Sum_probs=53.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeC-cccHHHHHhc-----CC-----CEEEeCCCCccccccCCCCCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCG-ARNIEFVKSL-----GA-----DEVLDYKTPDGAALKSPSGRK  132 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~~-----g~-----~~v~~~~~~~~~~~~~~~~~~  132 (240)
                      ++.++|||+|  ||-|..+-.+++..+. +|.++.- ++=.+.++++     ++     ..++.. +. ..-++. .++.
T Consensus        74 ~~p~~vLiiG--gG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~-D~-~~~l~~-~~~~  148 (274)
T d1iy9a_          74 PNPEHVLVVG--GGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVD-DG-FMHIAK-SENQ  148 (274)
T ss_dssp             SSCCEEEEES--CTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEES-CS-HHHHHT-CCSC
T ss_pred             CCcceEEecC--CCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEec-hH-HHHHhh-cCCC
Confidence            4558999998  3445566777787776 8888884 3444555443     11     111111 10 111222 3467


Q ss_pred             ccEEE-eCCCC---C-------CccccccCCCCCcEEEEeC
Q 045248          133 YDAVI-HCATG---I-------PWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       133 ~d~v~-d~~g~---~-------~~~~~~~~l~~~G~iv~~g  162 (240)
                      +|+|+ |....   .       .++.+.++|+++|.++.-.
T Consensus       149 yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~  189 (274)
T d1iy9a_         149 YDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (274)
T ss_dssp             EEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence            99995 43321   0       1556777899999988644

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.56  E-value=0.2  Score=34.64  Aligned_cols=31  Identities=16%  Similarity=0.098  Sum_probs=27.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEe
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASC   98 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~   98 (240)
                      ..+|+|+| +|+.|+.+...+...|.+++++.
T Consensus         5 ~~~VvIIG-gGpaGl~aA~~~ar~g~~v~vie   35 (192)
T d1vdca1           5 NTRLCIVG-SGPAAHTAAIYAARAELKPLLFE   35 (192)
T ss_dssp             EEEEEEEC-CSHHHHHHHHHHHHTTCCCEEEC
T ss_pred             cceEEEEC-CCHHHHHHHHHHHHcCCcEEEEE
Confidence            46899999 89999999999999999888876

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=88.54  E-value=0.23  Score=35.24  Aligned_cols=92  Identities=14%  Similarity=0.162  Sum_probs=53.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCC--
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCAT--  141 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g--  141 (240)
                      .++.+||=+|  +|.|..+..++ ..|.+|++++.+ +..+.+++...+.+ .....+.....  ..+.||+|+-.--  
T Consensus        19 ~~~~~VLDiG--cG~G~~~~~l~-~~g~~v~giD~s~~~i~~a~~~~~~~~-~~~~~~~~~~~--~~~~fD~I~~~~vle   92 (225)
T d2p7ia1          19 FRPGNLLELG--SFKGDFTSRLQ-EHFNDITCVEASEEAISHAQGRLKDGI-TYIHSRFEDAQ--LPRRYDNIVLTHVLE   92 (225)
T ss_dssp             CCSSCEEEES--CTTSHHHHHHT-TTCSCEEEEESCHHHHHHHHHHSCSCE-EEEESCGGGCC--CSSCEEEEEEESCGG
T ss_pred             CCCCcEEEEe--CCCcHHHHHHH-HcCCeEEEEeCcHHHhhhhhccccccc-ccccccccccc--cccccccccccceeE
Confidence            4677899888  34466666555 457899999964 67777765433221 11111111111  2457999974322  


Q ss_pred             ---CCC--ccccc-cCCCCCcEEEEeC
Q 045248          142 ---GIP--WSTFE-PNLGTNGKVIDIT  162 (240)
Q Consensus       142 ---~~~--~~~~~-~~l~~~G~iv~~g  162 (240)
                         .+.  +..+. ++|+++|.++..-
T Consensus        93 h~~d~~~~l~~i~~~~Lk~gG~l~i~~  119 (225)
T d2p7ia1          93 HIDDPVALLKRINDDWLAEGGRLFLVC  119 (225)
T ss_dssp             GCSSHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ecCCHHHHHHHHHHHhcCCCceEEEEe
Confidence               111  34454 6799999887653

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=88.46  E-value=0.24  Score=33.61  Aligned_cols=31  Identities=10%  Similarity=0.071  Sum_probs=26.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEE
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTAS   97 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~   97 (240)
                      .+++|+|+| +|.+|.-++..++.+|.++..+
T Consensus         2 ~~~~VvIIG-gG~~G~e~A~~l~~~g~~v~v~   32 (185)
T d1q1ra1           2 ANDNVVIVG-TGLAGVEVAFGLRASGWEGNIR   32 (185)
T ss_dssp             CSCEEEEEC-CSHHHHHHHHHHHHTTCCSEEE
T ss_pred             CCCCEEEEC-CcHHHHHHHHHHHHcCCceEEE
Confidence            568999999 8999999999999999854433

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.35  E-value=0.14  Score=38.24  Aligned_cols=94  Identities=20%  Similarity=0.217  Sum_probs=53.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHHHHHhcC---------C-CEEEeCCCCccccccCCCCCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNIEFVKSLG---------A-DEVLDYKTPDGAALKSPSGRK  132 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g---------~-~~v~~~~~~~~~~~~~~~~~~  132 (240)
                      +.-++|||+|+  |-|..+-.+++..+. +|.++.-+ +=.+.++++-         . ..++. .+ ....+.......
T Consensus        79 ~~pk~VLiiGg--G~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~-~D-a~~~l~~~~~~~  154 (290)
T d1xj5a_          79 PNPKKVLVIGG--GDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVI-GD-GVAFLKNAAEGS  154 (290)
T ss_dssp             SCCCEEEEETC--SSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEE-SC-HHHHHHTSCTTC
T ss_pred             CCCcceEEecC--CchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEE-cc-HHHHHhhccccC
Confidence            34578999993  335556677887776 78888844 4455554432         1 11111 11 011223344568


Q ss_pred             ccEEE-eCCCCC----------CccccccCCCCCcEEEEeC
Q 045248          133 YDAVI-HCATGI----------PWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       133 ~d~v~-d~~g~~----------~~~~~~~~l~~~G~iv~~g  162 (240)
                      ||+|+ |.....          .++.+.++|+++|.++.-.
T Consensus       155 yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  195 (290)
T d1xj5a_         155 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  195 (290)
T ss_dssp             EEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence            99775 444311          1556777899999987644

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.27  E-value=0.26  Score=34.49  Aligned_cols=30  Identities=27%  Similarity=0.110  Sum_probs=26.9

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      .|+|+| +|+.|+.+...|...|.+|.++.+
T Consensus         5 DviVIG-~GpaGl~aA~~aar~G~kV~vIEk   34 (223)
T d1ebda1           5 ETLVVG-AGPGGYVAAIRAAQLGQKVTIVEK   34 (223)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CEEEEC-CCHHHHHHHHHHHHCCCEEEEEec
Confidence            478899 899999999999999999998874

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=88.17  E-value=0.56  Score=29.89  Aligned_cols=90  Identities=11%  Similarity=0.018  Sum_probs=54.0

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCCC---
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIP---  144 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~---  144 (240)
                      .++|+| .|.+|..+++.++  +..|+++.. +++.+.++..|.. ++..+..+...++..+=...+.++=+...+.   
T Consensus         2 HivI~G-~g~~g~~l~~~L~--~~~i~vi~~d~~~~~~~~~~~~~-~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~   77 (129)
T d2fy8a1           2 HVVICG-WSESTLECLRELR--GSEVFVLAEDENVRKKVLRSGAN-FVHGDPTRVSDLEKANVRGARAVIVNLESDSETI   77 (129)
T ss_dssp             CEEEES-CCHHHHHHHHTSC--GGGEEEEESCTTHHHHHHHTTCE-EEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHH
T ss_pred             EEEEEC-CCHHHHHHHHHHc--CCCCEEEEcchHHHHHHHhcCcc-ccccccCCHHHHHHhhhhcCcEEEEeccchhhhH
Confidence            578999 8999999888775  445566664 4677777777764 4433333333333344456777777666432   


Q ss_pred             -ccccccCCCCCcEEEEeC
Q 045248          145 -WSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       145 -~~~~~~~l~~~G~iv~~g  162 (240)
                       .-...+.+.|..+++...
T Consensus        78 ~~~~~~r~~~~~~~iia~~   96 (129)
T d2fy8a1          78 HCILGIRKIDESVRIIAEA   96 (129)
T ss_dssp             HHHHHHHHHCSSSCEEEEC
T ss_pred             HHHHHHHHHCCCceEEEEE
Confidence             223344456665555443

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=88.03  E-value=0.26  Score=35.84  Aligned_cols=32  Identities=13%  Similarity=0.061  Sum_probs=27.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      -.|+|+| +|.+|+.+...+...|.+|+++++.
T Consensus         5 ~DvvIIG-aGi~Gls~A~~La~~G~~V~vlE~~   36 (276)
T d1ryia1           5 YEAVVIG-GGIIGSAIAYYLAKENKNTALFESG   36 (276)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEEC-cCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            4689999 8999999888888889999999964

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.96  E-value=0.3  Score=34.44  Aligned_cols=34  Identities=12%  Similarity=0.105  Sum_probs=29.0

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      +.--|+|+| +|+-|+.+...|...|.+|+.++..
T Consensus         4 ~~yDviVIG-~GpAGl~aA~~aa~~G~kV~lie~~   37 (233)
T d1v59a1           4 KSHDVVIIG-GGPAGYVAAIKAAQLGFNTACVEKR   37 (233)
T ss_dssp             EEEEEEEEC-CSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cccCEEEEC-CCHHHHHHHHHHHHCCCcEEEEEec
Confidence            345688999 8999999999999999999999853

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.93  E-value=0.28  Score=36.82  Aligned_cols=30  Identities=20%  Similarity=0.178  Sum_probs=26.9

Q ss_pred             EEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           70 ILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        70 vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      |+|+| +|..|+.+...++..|.+|+++...
T Consensus         2 ViVIG-aG~aGL~aA~~L~~~G~~V~VlE~~   31 (383)
T d2v5za1           2 VVVVG-GGISGMAAAKLLHDSGLNVVVLEAR   31 (383)
T ss_dssp             EEEEC-CBHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEEC-CCHHHHHHHHHHHhCCCCEEEEecC
Confidence            78999 8999999999999999999999853

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=87.90  E-value=0.18  Score=38.22  Aligned_cols=97  Identities=15%  Similarity=0.122  Sum_probs=54.7

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHHHH----HhcCCCEEEeCCCCc-cccc--cCCCCCcccE
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNIEFV----KSLGADEVLDYKTPD-GAAL--KSPSGRKYDA  135 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~~~----~~~g~~~v~~~~~~~-~~~~--~~~~~~~~d~  135 (240)
                      ++|++||=.+  ++.|...+.+++. |+ +|++++.+ +..+.+    +..|....+.....+ ....  ....+..||+
T Consensus       144 ~~g~~VLDl~--~g~G~~si~~a~~-ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~  220 (324)
T d2as0a2         144 QPGDRVLDVF--TYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDI  220 (324)
T ss_dssp             CTTCEEEETT--CTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             CCCCeeeccc--Ccccchhhhhhhc-CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCc
Confidence            6889988765  2344445555544 66 89999954 555555    345542112221222 1111  1123467999


Q ss_pred             EEeCCC---CC-------------CccccccCCCCCcEEEEeCCC
Q 045248          136 VIHCAT---GI-------------PWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       136 v~d~~g---~~-------------~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      |+---.   ..             .+..++++|+|||.++.+...
T Consensus       221 Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s  265 (324)
T d2as0a2         221 VVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  265 (324)
T ss_dssp             EEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             hhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            984222   10             245567899999999887643

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=87.87  E-value=1.4  Score=29.12  Aligned_cols=130  Identities=10%  Similarity=0.042  Sum_probs=71.0

Q ss_pred             eEEEEcCCchHHHH-HHHHHHhC-CCEEEEEeC-c-cc-HHHHHhcCCCEEEeCCCCccccccCCCCCcccEEEeCCCCC
Q 045248           69 NILVTAASGGVGHY-AVQLAKLG-NTHVTASCG-A-RN-IEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGI  143 (240)
Q Consensus        69 ~vlV~G~~g~vG~~-~~~~a~~~-g~~v~~~~~-~-~~-~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  143 (240)
                      +|.|+| +|.+|.- .+..++.. ++++++++. + ++ .+.+++++.. .+  +.  ...+.    ..+|+|+-++...
T Consensus         3 ri~iIG-~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~-~~--~~--~~~l~----~~~D~V~I~tp~~   72 (164)
T d1tlta1           3 RIGVVG-LGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIP-YA--DS--LSSLA----ASCDAVFVHSSTA   72 (164)
T ss_dssp             EEEEEC-CSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCC-BC--SS--HHHHH----TTCSEEEECSCTT
T ss_pred             EEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhccccc-cc--cc--chhhh----hhcccccccccch
Confidence            688999 8999964 56666654 668888884 3 44 4455677653 21  11  11111    3489999888765


Q ss_pred             C-ccccccCCCCCcEEEEeCCCch---HHHHHHHhhheeccceeeeEEEc-CCHHHHHHHHHHHHCCceEE
Q 045248          144 P-WSTFEPNLGTNGKVIDITPGPS---AMLTFALKKLTFSKKQLVPLLLI-PKRENLDFLVKLVKEGKLKT  209 (240)
Q Consensus       144 ~-~~~~~~~l~~~G~iv~~g~~~~---~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~i~~  209 (240)
                      . ...+..+++.| +=|.+..+-.   .............+..+...+.. ..+...+.+.+++.+|.+-.
T Consensus        73 ~h~~~~~~al~~g-k~V~~EKPla~~~~e~~~l~~~a~~~~~~~~v~~~~r~~~~~~~~~~~~i~~g~ig~  142 (164)
T d1tlta1          73 SHFDVVSTLLNAG-VHVCVDKPLAENLRDAERLVELAARKKLTLMVGFNRRFFVGCARHFIECVQNQTVPQ  142 (164)
T ss_dssp             HHHHHHHHHHHTT-CEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEECGGGGHHHHHHHHHHHHHHTCCCT
T ss_pred             hcccccccccccc-ceeeccccccCCHHHHHHHHHHHHHcCCcEEEEeccccCHHHHHHHHHHHHCCCCCC
Confidence            5 66666667665 4455553221   11111222222233323222211 12334456778888887754

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.71  E-value=0.62  Score=30.56  Aligned_cols=33  Identities=30%  Similarity=0.258  Sum_probs=27.1

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCC--EEEEEeCcc
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNT--HVTASCGAR  101 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~~~~  101 (240)
                      +|.|+||+|.+|..+..++...|.  +++.++.++
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            689999779999999999998886  677776543

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=87.53  E-value=0.33  Score=34.35  Aligned_cols=32  Identities=19%  Similarity=0.042  Sum_probs=28.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      --|+|+| +|+-|+.+...+...|.+|..+...
T Consensus         7 yDviIIG-~GPaGlsaA~~aa~~G~~V~viE~~   38 (229)
T d1ojta1           7 YDVVVLG-GGPGGYSAAFAAADEGLKVAIVERY   38 (229)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cCEEEEC-cCHHHHHHHHHHHHCCCeEEEEecc
Confidence            3588999 8999999999999999999999853

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=87.46  E-value=0.39  Score=36.16  Aligned_cols=34  Identities=15%  Similarity=0.129  Sum_probs=26.6

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCC--CEEEEEeCccc
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGN--THVTASCGARN  102 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g--~~v~~~~~~~~  102 (240)
                      ++|+|+| +|..|++++..++..|  .+|++..+.++
T Consensus         5 KrVaIIG-aG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           5 RKIAIIG-AGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CeEEEEC-cCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            6899999 8999998886665544  58998886543

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=87.34  E-value=0.23  Score=35.00  Aligned_cols=31  Identities=19%  Similarity=0.105  Sum_probs=28.0

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      ..++|+| +|+.|+.+...+..+|.+|..+.+
T Consensus         6 ~DlvVIG-~GpaGl~aA~~aa~~G~~V~liE~   36 (220)
T d1lvla1           6 TTLLIIG-GGPGGYVAAIRAGQLGIPTVLVEG   36 (220)
T ss_dssp             CSEEEEC-CSHHHHHHHHHHHHHTCCEEEECS
T ss_pred             cCEEEEC-CCHHHHHHHHHHHHCCCcEEEEec
Confidence            4588999 899999999999999999999874

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=87.26  E-value=0.74  Score=34.64  Aligned_cols=34  Identities=9%  Similarity=0.059  Sum_probs=28.9

Q ss_pred             CCeEEEEcCC--chHHHHHHHHHHhCCCEEEEEeCc
Q 045248           67 QKNILVTAAS--GGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        67 g~~vlV~G~~--g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      ++..||+|++  .|+|.++.+.+...|++|+.+.+.
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~   37 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWP   37 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECG
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCc
Confidence            5678999943  599999999999999999988754

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=87.01  E-value=2.7  Score=27.28  Aligned_cols=32  Identities=19%  Similarity=0.142  Sum_probs=25.8

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCC--EEEEEeCc
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNT--HVTASCGA  100 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~~~  100 (240)
                      .+|.|+| +|.+|..+...+...|.  +++.++..
T Consensus         2 ~Ki~IIG-aG~VG~~~a~~l~~~~l~~ElvL~D~~   35 (143)
T d1llda1           2 TKLAVIG-AGAVGSTLAFAAAQRGIAREIVLEDIA   35 (143)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            4688999 69999998888887776  77777754

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=86.89  E-value=0.84  Score=31.83  Aligned_cols=93  Identities=16%  Similarity=0.050  Sum_probs=54.4

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCC-CEEEEEeC-cccHH----HHHhcCCCEEEeCCCCccc-cccCCCCCcccEEEeC
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGN-THVTASCG-ARNIE----FVKSLGADEVLDYKTPDGA-ALKSPSGRKYDAVIHC  139 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g-~~v~~~~~-~~~~~----~~~~~g~~~v~~~~~~~~~-~~~~~~~~~~d~v~d~  139 (240)
                      +..||=+|  .|.|..++.+|+... ..+++++. .....    .+++.|.+.+--.. .+.. .........+|.|+-.
T Consensus        30 ~PlvLeIG--cG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~-~Da~~l~~~~~~~~~d~v~i~  106 (204)
T d2fcaa1          30 NPIHIEVG--TGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLN-IDADTLTDVFEPGEVKRVYLN  106 (204)
T ss_dssp             CCEEEEEC--CTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEEC-CCGGGHHHHCCTTSCCEEEEE
T ss_pred             CceEEEEE--ecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcc-cchhhhhcccCchhhhccccc
Confidence            34566677  456888888999775 59999994 34443    34566765432111 1111 1122344567777644


Q ss_pred             CCCC---------------CccccccCCCCCcEEEEeC
Q 045248          140 ATGI---------------PWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       140 ~g~~---------------~~~~~~~~l~~~G~iv~~g  162 (240)
                      ...+               .+..+.+.|+|||.+....
T Consensus       107 fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1         107 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             cccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            3322               2445667899999987664

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=86.87  E-value=0.33  Score=35.26  Aligned_cols=95  Identities=15%  Similarity=0.075  Sum_probs=58.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhc-CCCEEEeCCCCccccccCCCCCcccEEEeCCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSL-GADEVLDYKTPDGAALKSPSGRKYDAVIHCATG  142 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~-g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  142 (240)
                      .++.+||=+|  +|.|..+..++...+.+|++++.+ +-.+.+++. .....+++...+..... .....||+|+-.-.-
T Consensus        92 ~~~~~vLD~G--cG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~I~~~~vl  168 (254)
T d1xtpa_          92 HGTSRALDCG--AGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETAT-LPPNTYDLIVIQWTA  168 (254)
T ss_dssp             CCCSEEEEET--CTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCC-CCSSCEEEEEEESCG
T ss_pred             CCCCeEEEec--ccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEccccccc-cCCCccceEEeeccc
Confidence            5677888887  456888888887766799999965 556777543 22222222222211111 234679999765431


Q ss_pred             C---------CccccccCCCCCcEEEEeC
Q 045248          143 I---------PWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       143 ~---------~~~~~~~~l~~~G~iv~~g  162 (240)
                      .         .+..+.+.|+++|.++...
T Consensus       169 ~hl~d~d~~~~l~~~~~~LkpgG~iii~e  197 (254)
T d1xtpa_         169 IYLTDADFVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccchhhhHHHHHHHHHhcCCCcEEEEEe
Confidence            1         1556777899999988654

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.87  E-value=0.36  Score=33.80  Aligned_cols=30  Identities=17%  Similarity=0.108  Sum_probs=27.1

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      -++|+| +|+.|+.+...+...|.+|.++..
T Consensus         5 DviIIG-~GpaG~~aA~~aar~G~kV~vIEk   34 (221)
T d3grsa1           5 DYLVIG-GGSGGLASARRAAELGARAAVVES   34 (221)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CEEEEC-CCHHHHHHHHHHHHCCCEEEEEec
Confidence            478899 899999999999999999999874

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=86.73  E-value=0.72  Score=30.30  Aligned_cols=32  Identities=13%  Similarity=0.024  Sum_probs=25.0

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCC--EEEEEeCc
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNT--HVTASCGA  100 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~~~  100 (240)
                      ++|.|+| +|.+|..++..+...|.  +++..+.+
T Consensus         2 kKI~IIG-aG~VG~~~a~~l~~~~~~~elvL~Di~   35 (146)
T d1hyha1           2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDAN   35 (146)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CeEEEEC-cCHHHHHHHHHHHhcCCCceEEEEecc
Confidence            6788999 79999888877776664  77777754

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.67  E-value=0.52  Score=32.80  Aligned_cols=40  Identities=15%  Similarity=0.114  Sum_probs=33.0

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHHhc
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSL  109 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~  109 (240)
                      +|.|+| +|-+|+.....+...|.+|++.+.+ ++.+.+++-
T Consensus         2 kI~ViG-lG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g   42 (202)
T d1mv8a2           2 RISIFG-LGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQG   42 (202)
T ss_dssp             EEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTT
T ss_pred             EEEEEC-CCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhccc
Confidence            588999 9999999888888899999999965 666666443

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=86.64  E-value=0.088  Score=39.73  Aligned_cols=95  Identities=19%  Similarity=0.199  Sum_probs=53.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHHHHHhcCCC--EEEeCCC-----Ccc-ccccCCCCCccc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNIEFVKSLGAD--EVLDYKT-----PDG-AALKSPSGRKYD  134 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~--~v~~~~~-----~~~-~~~~~~~~~~~d  134 (240)
                      +..++|||+|  ||-|..+-.++++.+. +|.++.-+ +=.+.++++-..  ..++...     .+. .-++ ...+.||
T Consensus       105 ~~pk~VLIiG--gG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~-~~~~~yD  181 (312)
T d2b2ca1         105 PDPKRVLIIG--GGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLK-NHKNEFD  181 (312)
T ss_dssp             SSCCEEEEES--CTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHH-HCTTCEE
T ss_pred             CCCCeEEEeC--CCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHH-hCCCCCC
Confidence            4557899998  3445556677887776 78888854 545666553211  1111110     111 1112 2456799


Q ss_pred             EEEeCC----CC-------CCccccccCCCCCcEEEEeC
Q 045248          135 AVIHCA----TG-------IPWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       135 ~v~d~~----g~-------~~~~~~~~~l~~~G~iv~~g  162 (240)
                      +||--+    +.       +-++.+.++|+++|.++.-.
T Consensus       182 vII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~  220 (312)
T d2b2ca1         182 VIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  220 (312)
T ss_dssp             EEEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence            997332    21       11556677899999988654

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=86.62  E-value=0.99  Score=28.09  Aligned_cols=34  Identities=12%  Similarity=0.072  Sum_probs=26.3

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHh---CCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKL---GNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~---~g~~v~~~~~~  100 (240)
                      ..++++|+| +|.+|.-+++++..   .|.+|..+.+.
T Consensus        17 ~p~~v~IiG-gG~ig~E~A~~l~~~~~~g~~Vtli~~~   53 (117)
T d1feca2          17 APKRALCVG-GGYISIEFAGIFNAYKARGGQVDLAYRG   53 (117)
T ss_dssp             CCSEEEEEC-SSHHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred             cCCeEEEEC-CChHHHHHHHHhHhhcccccccceeccc
Confidence            457899999 89999887776554   37788888753

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=86.52  E-value=0.78  Score=30.19  Aligned_cols=35  Identities=11%  Similarity=0.048  Sum_probs=30.3

Q ss_pred             CCCCeEEEE--cCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           65 GQQKNILVT--AASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~--G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .+++.++|+  | +|-+|+-+.+.+..+|.+|..+.+.
T Consensus        37 ~~~~~vvi~d~g-gg~ig~e~A~~la~~G~~Vtlv~~~   73 (156)
T d1djqa2          37 KIGKRVVILNAD-TYFMAPSLAEKLATAGHEVTIVSGV   73 (156)
T ss_dssp             CCCSEEEEEECC-CSSHHHHHHHHHHHTTCEEEEEESS
T ss_pred             ccCCceEEEecC-CChHHHHHHHHHHHcCCeEEEEecC
Confidence            577888886  5 7889999999999999999999854

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=86.40  E-value=0.2  Score=37.97  Aligned_cols=31  Identities=35%  Similarity=0.399  Sum_probs=25.7

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCC--EEEEEe
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNT--HVTASC   98 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~   98 (240)
                      .+|||+||+|-+|..++..+...|.  +|++.+
T Consensus         3 mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d   35 (346)
T d1oc2a_           3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLD   35 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEe
Confidence            5799999999999999888877776  566655

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=86.10  E-value=0.36  Score=35.79  Aligned_cols=31  Identities=26%  Similarity=0.261  Sum_probs=27.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      --|+|+| +|..|+.+..-|...|++|++++.
T Consensus        17 ~DVlVIG-~G~aGl~aA~~la~~G~~V~lvEK   47 (308)
T d1y0pa2          17 VDVVVVG-SGGAGFSAAISATDSGAKVILIEK   47 (308)
T ss_dssp             CSEEEEC-CSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             CCEEEEC-cCHHHHHHHHHHHHCCCcEEEEec
Confidence            3589999 899999998888899999999884

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.82  E-value=0.066  Score=39.96  Aligned_cols=92  Identities=13%  Similarity=0.131  Sum_probs=50.9

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEe-CcccHHHHHhcC----------CCEEEeCCCCccccccCCCCCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASC-GARNIEFVKSLG----------ADEVLDYKTPDGAALKSPSGRK  132 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~-~~~~~~~~~~~g----------~~~v~~~~~~~~~~~~~~~~~~  132 (240)
                      +..++|||+|+  |-|..+-.+++..+. +|+++. .++=.+.++++-          ...++. .+. ..-++ ...++
T Consensus        77 ~~pk~vLiiGg--G~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~-~Da-~~~l~-~~~~~  151 (285)
T d2o07a1          77 PNPRKVLIIGG--GDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHV-GDG-FEFMK-QNQDA  151 (285)
T ss_dssp             SSCCEEEEEEC--TTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE-SCH-HHHHH-TCSSC
T ss_pred             cCcCeEEEeCC--CchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEE-ccH-HHHHh-cCCCC
Confidence            45588999983  345556677787766 788777 344445554321          011111 110 11122 23467


Q ss_pred             ccEEE-eCCCC----------CCccccccCCCCCcEEEEe
Q 045248          133 YDAVI-HCATG----------IPWSTFEPNLGTNGKVIDI  161 (240)
Q Consensus       133 ~d~v~-d~~g~----------~~~~~~~~~l~~~G~iv~~  161 (240)
                      +|+|+ |....          +.++.+.+.|+++|.++.-
T Consensus       152 yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q  191 (285)
T d2o07a1         152 FDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ  191 (285)
T ss_dssp             EEEEEEECC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred             CCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence            99986 43321          1155567789999988754

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=85.80  E-value=2.2  Score=27.88  Aligned_cols=42  Identities=7%  Similarity=0.054  Sum_probs=27.2

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCccc-HHHHHhcC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCGARN-IEFVKSLG  110 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~~~-~~~~~~~g  110 (240)
                      ++|.++| .|.+|...++-+...|..++.-.++++ .+..++.+
T Consensus         1 ekIg~IG-lG~MG~~ma~~L~~~g~~~~~~~~~~~~~~~~~~~~   43 (156)
T d2cvza2           1 EKVAFIG-LGAMGYPMAGHLARRFPTLVWNRTFEKALRHQEEFG   43 (156)
T ss_dssp             CCEEEEC-CSTTHHHHHHHHHTTSCEEEECSSTHHHHHHHHHHC
T ss_pred             CeEEEEe-HHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHcC
Confidence            4688999 999998877777666766543333333 34444444

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=85.78  E-value=0.42  Score=36.52  Aligned_cols=31  Identities=23%  Similarity=0.226  Sum_probs=26.0

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCC-EEEEEeC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNT-HVTASCG   99 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~   99 (240)
                      +|||+||+|-+|..++..+...|. .|+++.+
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~   33 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDK   33 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            699999999999999998888888 4565653

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=85.69  E-value=0.34  Score=36.42  Aligned_cols=31  Identities=16%  Similarity=0.213  Sum_probs=25.2

Q ss_pred             CeEEEEcCCchHHHHHHHHHH-----hCCCEEEEEeC
Q 045248           68 KNILVTAASGGVGHYAVQLAK-----LGNTHVTASCG   99 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~-----~~g~~v~~~~~   99 (240)
                      --|+|+| +|+.|+.+..++.     ..|.+|+++.+
T Consensus         8 yDV~IvG-aG~aGl~lA~~La~~~~~~~G~~v~vlEr   43 (360)
T d1pn0a1           8 CDVLIVG-AGPAGLMAARVLSEYVRQKPDLKVRIIDK   43 (360)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHHHHHHSTTCCEEEECS
T ss_pred             CCEEEEC-cCHHHHHHHHHHHhcccccCCCcEEEEcC
Confidence            4689999 8999999877763     57899988884

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=85.56  E-value=2.1  Score=31.32  Aligned_cols=97  Identities=14%  Similarity=0.170  Sum_probs=62.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC---c-ccHHHHHhcCCCEEEeCCCCc-------------------
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG---A-RNIEFVKSLGADEVLDYKTPD-------------------  121 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~---~-~~~~~~~~~g~~~v~~~~~~~-------------------  121 (240)
                      .++.. +|...+|+.|+++...++.+|.+++++.+   + .+.+.++.+|++.++...+.+                   
T Consensus        58 ~~~~~-vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~a~~~~~~~~~~~~~~~  136 (292)
T d2bhsa1          58 KPGDV-LIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANRGEGKL  136 (292)
T ss_dssp             CTTSE-EEEECCSHHHHHHHHHHHHHTCEEEEEEESCCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHHTSSEE
T ss_pred             CCCce-eeeecccchhHHHHHHHHhcCcceEeeeccCchhhhhHHHHHhCCCcceeecccchHHHHHHHhhccccccccc
Confidence            44454 55555999999999999999997665553   2 577888999997544322110                   


Q ss_pred             -------c----------ccccCCCCCcccEEEeCCCCCC----ccccccCCCCCcEEEEeC
Q 045248          122 -------G----------AALKSPSGRKYDAVIHCATGIP----WSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       122 -------~----------~~~~~~~~~~~d~v~d~~g~~~----~~~~~~~l~~~G~iv~~g  162 (240)
                             .          .++...-+..+|+++-++|+-.    +...++...+..+++.+.
T Consensus       137 ~~~~~~~~~~~~~~~~~a~Ei~~q~~~~~d~vv~~~G~Gg~~~G~~~~~k~~~~~~~i~~Ve  198 (292)
T d2bhsa1         137 LDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQ  198 (292)
T ss_dssp             CCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEEE
T ss_pred             cCCCchhcchhhHHHHHHHHhHHhcCCCCCcccccCCCccchhhhhhhhhhccCcceEEEec
Confidence                   0          0000112345899999888532    445667777888887664

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=85.22  E-value=1.3  Score=29.08  Aligned_cols=34  Identities=21%  Similarity=0.151  Sum_probs=27.5

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~  100 (240)
                      |..+|.|+| +|.+|..+..++...+. ++...+..
T Consensus         2 p~~KI~IIG-aG~VG~~~a~~l~~~~l~el~L~Di~   36 (150)
T d1t2da1           2 PKAKIVLVG-SGMIGGVMATLIVQKNLGDVVLFDIV   36 (150)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            457899999 79999988888888887 77777743

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=85.14  E-value=1.9  Score=27.33  Aligned_cols=59  Identities=19%  Similarity=0.213  Sum_probs=42.3

Q ss_pred             hhhCCCcCCCCCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHHHHHhcCCCEEEeCC
Q 045248           55 QSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNIEFVKSLGADEVLDYK  118 (240)
Q Consensus        55 ~~~~~~~~~~~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~~v~~~~  118 (240)
                      +.+++     ..-+.+++.-..-..-+.++++++.+|. ++++..++ +..+.++++|++.++++.
T Consensus        59 ~~~~i-----~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~~~~~~~~~~l~~~G~d~vi~p~  119 (132)
T d1lssa_          59 EDAGI-----EDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFERLGVDVVVSPE  119 (132)
T ss_dssp             HHTTT-----TTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHHHHHHHTTCSEEECHH
T ss_pred             hhcCh-----hhhhhhcccCCcHHHHHHHHHHHHHcCCceEEEEecCHHHHHHHHHCCCCEEECHH
Confidence            56666     4555554432244556778899999998 78877764 778889999999998754

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=84.85  E-value=0.44  Score=34.66  Aligned_cols=30  Identities=13%  Similarity=0.121  Sum_probs=26.6

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      -|+|+| +|.+|+.++.-+...|.+|+++++
T Consensus         5 DvvIIG-aGi~Gls~A~~La~~G~~V~viE~   34 (281)
T d2gf3a1           5 DVIVVG-AGSMGMAAGYQLAKQGVKTLLVDA   34 (281)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHCCCcEEEEeC
Confidence            488999 899999988888889999999985

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.84  E-value=0.38  Score=34.05  Aligned_cols=29  Identities=17%  Similarity=0.161  Sum_probs=26.8

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEe
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASC   98 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~   98 (240)
                      -|+|+| +|+-|+.+...|...|.+|.++.
T Consensus         5 DviVIG-~GpaGl~aA~~aa~~G~kV~viE   33 (235)
T d1h6va1           5 DLIIIG-GGSGGLAAAKEAAKFDKKVMVLD   33 (235)
T ss_dssp             EEEEEC-CSHHHHHHHHHHGGGCCCEEEEC
T ss_pred             CEEEEC-CCHHHHHHHHHHHHCCCeEEEEe
Confidence            588999 89999999999999999999987

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=84.14  E-value=0.47  Score=35.47  Aligned_cols=31  Identities=23%  Similarity=0.278  Sum_probs=27.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      --|+|+| +|..|+.+...|...|++|+++..
T Consensus        24 ~DVvVIG-~G~aGl~aA~~la~~G~~V~llEk   54 (322)
T d1d4ca2          24 TDVVIIG-SGGAGLAAAVSARDAGAKVILLEK   54 (322)
T ss_dssp             CSEEEEC-SSHHHHHHHHHHHTTTCCEEEECS
T ss_pred             ceEEEEC-cCHHHHHHHHHHHHCCCcEEEEeC
Confidence            3489999 899999998888889999999985

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=84.04  E-value=0.44  Score=35.70  Aligned_cols=30  Identities=17%  Similarity=0.052  Sum_probs=26.8

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      -|+|+| +|.-|+.+.-.|...|++|+++..
T Consensus         7 DVvVIG-~G~AGl~AAl~aa~~G~~V~liEK   36 (336)
T d2bs2a2           7 DSLVIG-GGLAGLRAAVATQQKGLSTIVLSL   36 (336)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHTTTCCEEEECS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHCCCCEEEEec
Confidence            389999 899999999999999999998874

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.99  E-value=2.3  Score=32.26  Aligned_cols=50  Identities=16%  Similarity=0.242  Sum_probs=38.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC---c-ccHHHHHhcCCCEEE
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG---A-RNIEFVKSLGADEVL  115 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~---~-~~~~~~~~~g~~~v~  115 (240)
                      ++++. +|...+|+.|.++..+++.+|.+.+++.+   + .+.+.++.+|++.+.
T Consensus        95 ~~~~~-vv~aSsGN~g~a~A~~a~~~Gi~~~iv~p~~~~~~k~~~i~~~GA~vv~  148 (355)
T d1jbqa_          95 KPGDT-IIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVR  148 (355)
T ss_dssp             CTTCE-EEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEE
T ss_pred             ccCce-EEEecccchhhHHHHHHHhccCCeEEEeeccchHHHHHHHHhcCCeEEE
Confidence            44454 45555999999999999999997666663   2 578888999997554

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.99  E-value=0.11  Score=38.19  Aligned_cols=41  Identities=15%  Similarity=0.008  Sum_probs=27.0

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHH
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVK  107 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~  107 (240)
                      ..|.++|=+| +|+ |...+..+...+.+|++++- +...+.++
T Consensus        53 ~~g~~vLDiG-cG~-g~~~~~~~~~~~~~v~~~D~S~~~i~~~~   94 (263)
T d2g72a1          53 VSGRTLIDIG-SGP-TVYQLLSACSHFEDITMTDFLEVNRQELG   94 (263)
T ss_dssp             SCCSEEEEET-CTT-CCGGGTTGGGGCSEEEEECSCHHHHHHHH
T ss_pred             CCCcEEEEec-cCC-CHHHHHHhcccCCeEEEEeCCHHHHHHHH
Confidence            5789999999 654 44433444444559999995 45566664

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.88  E-value=0.19  Score=37.55  Aligned_cols=93  Identities=13%  Similarity=0.098  Sum_probs=51.5

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHHHHHhcCC----------CEEEeCCCCccccccCCCCCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNIEFVKSLGA----------DEVLDYKTPDGAALKSPSGRK  132 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~----------~~v~~~~~~~~~~~~~~~~~~  132 (240)
                      +.-++|||+|++  -|..+-.+++..+. +|.++.-+ +=.+.++++-.          ..++. .+. ..-++ ..++.
T Consensus        88 ~~pk~VLiiGgG--~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~-~Da-~~~l~-~~~~~  162 (295)
T d1inla_          88 PNPKKVLIIGGG--DGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVI-ANG-AEYVR-KFKNE  162 (295)
T ss_dssp             SSCCEEEEEECT--TCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE-SCH-HHHGG-GCSSC
T ss_pred             CCCceEEEecCC--chHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEh-hhH-HHHHh-cCCCC
Confidence            345899999943  34556677777765 88888844 44555544221          01111 110 11122 23467


Q ss_pred             ccEEE-eCCC----C-C------CccccccCCCCCcEEEEeC
Q 045248          133 YDAVI-HCAT----G-I------PWSTFEPNLGTNGKVIDIT  162 (240)
Q Consensus       133 ~d~v~-d~~g----~-~------~~~~~~~~l~~~G~iv~~g  162 (240)
                      ||+|+ |+..    . .      .+..+.++|+++|.++.-.
T Consensus       163 yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~  204 (295)
T d1inla_         163 FDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  204 (295)
T ss_dssp             EEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence            99986 3321    1 1      1556777899999987644

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=83.87  E-value=0.41  Score=33.45  Aligned_cols=31  Identities=13%  Similarity=0.009  Sum_probs=27.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      --|+|+| +|+-|+.+...|...|.+|.++..
T Consensus         4 YDviIIG-gGpAGl~aA~~aar~G~~V~viE~   34 (229)
T d3lada1           4 FDVIVIG-AGPGGYVAAIKSAQLGLKTALIEK   34 (229)
T ss_dssp             CSEEEEC-CSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             CCEEEEC-cCHHHHHHHHHHHHCCCeEEEEec
Confidence            3488999 899999999999999999998873

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=83.41  E-value=0.89  Score=34.74  Aligned_cols=32  Identities=25%  Similarity=0.263  Sum_probs=26.5

Q ss_pred             CCeEEEEcCCchHHHHHH-HHHHhCCCEEEEEe
Q 045248           67 QKNILVTAASGGVGHYAV-QLAKLGNTHVTASC   98 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~-~~a~~~g~~v~~~~   98 (240)
                      +-+|||+||+|=+|..++ ++++..|.+|++++
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D   34 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVD   34 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEe
Confidence            357999999999998766 56677899999986

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=83.28  E-value=0.52  Score=31.10  Aligned_cols=32  Identities=13%  Similarity=-0.006  Sum_probs=23.0

Q ss_pred             eEEEEcCCchHHHHHHHHHHh-CC---CEEEEEeCc
Q 045248           69 NILVTAASGGVGHYAVQLAKL-GN---THVTASCGA  100 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~-~g---~~v~~~~~~  100 (240)
                      +|.|+||+|-+|.-+++++.. ..   ..+....++
T Consensus         2 KVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~   37 (147)
T d1mb4a1           2 RVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTS   37 (147)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESS
T ss_pred             EEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccc
Confidence            589999999999999986542 22   366655543

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.12  E-value=0.72  Score=32.42  Aligned_cols=32  Identities=28%  Similarity=0.292  Sum_probs=25.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHh--CCCEEEEEeCc
Q 045248           68 KNILVTAASGGVGHYAVQLAKL--GNTHVTASCGA  100 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~--~g~~v~~~~~~  100 (240)
                      .+|.|+| +|+-|+.++..+..  .|.+|++....
T Consensus         2 ~kv~iIG-aGpaGl~aA~~L~~~~~~~~V~v~e~~   35 (230)
T d1cjca2           2 PQICVVG-SGPAGFYTAQHLLKHHSRAHVDIYEKQ   35 (230)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHCSSCEEEEECSS
T ss_pred             CeEEEEC-ccHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            3799999 99999998876543  47799888754

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.06  E-value=0.48  Score=33.41  Aligned_cols=32  Identities=16%  Similarity=0.014  Sum_probs=25.7

Q ss_pred             CeEEEEcCCchHHHHHHHHHHhCC-------CEEEEEeCc
Q 045248           68 KNILVTAASGGVGHYAVQLAKLGN-------THVTASCGA  100 (240)
Q Consensus        68 ~~vlV~G~~g~vG~~~~~~a~~~g-------~~v~~~~~~  100 (240)
                      .+|+|+| +|+-|+.+...+...|       ++|.+....
T Consensus         3 ~~VaVIG-aGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~   41 (239)
T d1lqta2           3 YYIAIVG-SGPSAFFAAASLLKAADTTEDLDMAVDMLEML   41 (239)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHHHHHHSTTCCEEEEEEESS
T ss_pred             cEEEEEC-cCHHHHHHHHHHHHcCCccccCCCceEEEecC
Confidence            4899999 9999999887776655       578888753

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=83.05  E-value=0.43  Score=35.65  Aligned_cols=32  Identities=25%  Similarity=0.275  Sum_probs=27.8

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      .-.|+|+| +|..|+.+..-|...|++|+++..
T Consensus        19 ~~DVvVIG-aG~aGl~AA~~aa~~G~~V~vlEK   50 (317)
T d1qo8a2          19 TTQVLVVG-AGSAGFNASLAAKKAGANVILVDK   50 (317)
T ss_dssp             EEEEEEEC-CSHHHHHHHHHHHHHTCCEEEECS
T ss_pred             ccCEEEEC-cCHHHHHHHHHHHHCCCcEEEEeC
Confidence            34589999 899999998888888999999984

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=82.59  E-value=0.64  Score=34.19  Aligned_cols=30  Identities=17%  Similarity=0.112  Sum_probs=24.9

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCC-EEEEEeC
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNT-HVTASCG   99 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~   99 (240)
                      .|+|+| +|.+|+++...+...|. +|.++++
T Consensus         3 dViIIG-aGi~G~s~A~~La~~G~~~V~liE~   33 (305)
T d1pj5a2           3 RIVIIG-AGIVGTNLADELVTRGWNNITVLDQ   33 (305)
T ss_dssp             CEEEEC-CSHHHHHHHHHHHHTTCCCEEEECS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHcCCCcEEEEeC
Confidence            599999 89999988777777897 6888874

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.56  E-value=0.44  Score=33.63  Aligned_cols=93  Identities=12%  Similarity=-0.026  Sum_probs=52.7

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhC--CCEEEEEeCc-ccHHHH----HhcCCCEEEeCCCCc-cccc----cCCCCCcc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLG--NTHVTASCGA-RNIEFV----KSLGADEVLDYKTPD-GAAL----KSPSGRKY  133 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~--g~~v~~~~~~-~~~~~~----~~~g~~~v~~~~~~~-~~~~----~~~~~~~~  133 (240)
                      +.++||-+|  .+.|..++.+|+++  +.+|++++.+ +..+.+    +..|...-+.....+ ...+    .......|
T Consensus        56 kpk~ILEiG--t~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~  133 (214)
T d2cl5a1          56 SPSLVLELG--AYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL  133 (214)
T ss_dssp             CCSEEEEEC--CTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCE
T ss_pred             CCCEEEEEc--cCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccccccc
Confidence            447899998  34566677788865  4599999954 444444    455643222221112 1111    11233568


Q ss_pred             cEEEeCCCCCC------ccccccCCCCCcEEEE
Q 045248          134 DAVIHCATGIP------WSTFEPNLGTNGKVID  160 (240)
Q Consensus       134 d~v~d~~g~~~------~~~~~~~l~~~G~iv~  160 (240)
                      |+++--.....      +...++.|++||.++.
T Consensus       134 D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~  166 (214)
T d2cl5a1         134 DMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLA  166 (214)
T ss_dssp             EEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             ceeeecccccccccHHHHHHHhCccCCCcEEEE
Confidence            98864333221      4456788999997663

>d2ax3a2 c.104.1.1 (A:1-211) Hypothetical protein TM0922, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: YjeF N-terminal domain-like
superfamily: YjeF N-terminal domain-like
family: YjeF N-terminal domain-like
domain: Hypothetical protein TM0922, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.51  E-value=5.8  Score=27.43  Aligned_cols=112  Identities=16%  Similarity=0.195  Sum_probs=59.5

Q ss_pred             hhchHHHHHHHHHHhhhCCCcCCCCCCCeEEEEcCCc---hHHHHHHHHHHhCCCEEEEEeC-c-cc------HHHHHhc
Q 045248           41 GLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASG---GVGHYAVQLAKLGNTHVTASCG-A-RN------IEFVKSL  109 (240)
Q Consensus        41 ~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~G~~g---~vG~~~~~~a~~~g~~v~~~~~-~-~~------~~~~~~~  109 (240)
                      ++..++..++..+.+..+-     ....+|+|.-|.|   +=|+++.+.++.+|++|.+... + .+      .+..+++
T Consensus        19 LMe~Ag~~~a~~i~~~~~~-----~~~~~vlvl~G~GNNGGDGl~~Ar~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~   93 (211)
T d2ax3a2          19 LMERAGISVVLAMEEELGN-----LSDYRFLVLCGGGNNGGDGFVVARNLLGVVKDVLVVFLGKKKTPDCEYNYGLYKKF   93 (211)
T ss_dssp             HHHHHHHHHHHHHHHHHSC-----CTTCEEEEEECSSHHHHHHHHHHHHHTTTSSEEEEEECCSSCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhccc-----ccCCcEEEEECCCCCchhHHHHHHHHHhcCCeeEEEecCccCCcHHHHHHHHHHHc
Confidence            3334444445555455432     2455676654455   4568899999999998776663 2 11      1222345


Q ss_pred             CCCEEEeCCCCccccccCCCCCcccEEEeCC-C----CCC---ccccccCCCCCc-EEEEeCCCc
Q 045248          110 GADEVLDYKTPDGAALKSPSGRKYDAVIHCA-T----GIP---WSTFEPNLGTNG-KVIDITPGP  165 (240)
Q Consensus       110 g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~-g----~~~---~~~~~~~l~~~G-~iv~~g~~~  165 (240)
                      +... ++..+.  .     ....+|+++|+. |    ++.   +...++.++... .++.+..++
T Consensus        94 ~~~~-~~~~~~--~-----~~~~~dlIIDal~G~Gl~~~l~~~~~~~i~~iN~~~~~vlsiDiPS  150 (211)
T d2ax3a2          94 GGKV-VEQFEP--S-----ILNEFDVVVDAIFGTGLRGEITGEYAEIINLVNKSGKVVVSVDVPS  150 (211)
T ss_dssp             TCCE-ESCCCG--G-----GGGGCSEEEEESCCTTCCSCCCHHHHHHHHHHHHSCCEEEEESSCT
T ss_pred             CCcc-cccccc--c-----cccCceEEEEecccCCccccchHHHHHHHHHHHhhccceeeeccCc
Confidence            5432 221111  1     124589999988 3    111   444555555443 577776543

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.42  E-value=2.5  Score=31.46  Aligned_cols=51  Identities=16%  Similarity=0.187  Sum_probs=39.8

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC---c-ccHHHHHhcCCCEEE
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG---A-RNIEFVKSLGADEVL  115 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~---~-~~~~~~~~~g~~~v~  115 (240)
                      +++...+|...+|+.|.+....++.+|.+.+++.+   + .+.+.++.+|++.++
T Consensus        62 ~~~~~~vv~aSsGN~g~a~A~~a~~~g~~~~iv~p~~~~~~k~~~i~~~Ga~vi~  116 (320)
T d1z7wa1          62 KPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVL  116 (320)
T ss_dssp             CTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             CCCCceEEeeCCchHHHHHHHHHHhhccceEEeehhhhhhhhhhhhhccCcceEE
Confidence            45666667777999999999999999996665552   2 578888999987554

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.38  E-value=1.9  Score=27.95  Aligned_cols=31  Identities=16%  Similarity=0.089  Sum_probs=23.9

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCC--EEEEEeCc
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNT--HVTASCGA  100 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~--~v~~~~~~  100 (240)
                      +|.|+| +|.+|..+...+...|.  +++.++..
T Consensus         2 KI~IIG-aG~VG~~~a~~l~~~~~~~elvL~Di~   34 (142)
T d1ojua1           2 KLGFVG-AGRVGSTSAFTCLLNLDVDEIALVDIA   34 (142)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred             EEEEEC-cCHHHHHHHHHHHhcCcCceEEEEecc
Confidence            578999 69999888877776664  77777744

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=82.04  E-value=0.99  Score=32.50  Aligned_cols=34  Identities=6%  Similarity=0.089  Sum_probs=29.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           66 QQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        66 ~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      +...++|+| +|+.|+.+...+..+|.+|.++...
T Consensus        41 k~yDvvVIG-gG~aG~~aA~~~a~~G~kv~vve~~   74 (261)
T d1mo9a1          41 REYDAIFIG-GGAAGRFGSAYLRAMGGRQLIVDRW   74 (261)
T ss_dssp             SCBSEEEEC-CSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             ccCCEEEEC-CCHHHHHHHHHHHHCCCeEEEEecc
Confidence            344688999 8999999999999999999988853

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=81.90  E-value=2.8  Score=26.00  Aligned_cols=49  Identities=16%  Similarity=0.151  Sum_probs=37.1

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc--ccHHHHHhcCCCEEE
Q 045248           67 QKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA--RNIEFVKSLGADEVL  115 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~--~~~~~~~~~g~~~v~  115 (240)
                      |++|||+-..-.+...+..+++..|++|+.++++  +..+.+++...+-++
T Consensus         1 GkrILivDD~~~~~~~l~~~L~~~g~~v~~~a~~~~~al~~~~~~~~dlii   51 (118)
T d1u0sy_           1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVT   51 (118)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHhccCCEEE
Confidence            6789998867778888889999999998876643  566777766655444

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.67  E-value=0.1  Score=37.86  Aligned_cols=41  Identities=27%  Similarity=0.108  Sum_probs=26.1

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeC-cccHHHHH
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCG-ARNIEFVK  107 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~-~~~~~~~~  107 (240)
                      .++.+||=+| +|. |.....+++..+.+|++++- +...+.++
T Consensus        50 ~~g~~vLDlG-cG~-G~~~~~~~~~~~~~v~giD~S~~~i~~a~   91 (257)
T d2a14a1          50 LQGDTLIDIG-SGP-TIYQVLAACDSFQDITLSDFTDRNREELE   91 (257)
T ss_dssp             CCEEEEEESS-CTT-CCGGGTTGGGTEEEEEEEESCHHHHHHHH
T ss_pred             CCCCEEEEEC-CCC-CHhHHHHhccccCcEEEecCCHHHHHHHH
Confidence            5788888888 553 54444455554448999994 45555554

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=81.62  E-value=0.81  Score=33.33  Aligned_cols=33  Identities=21%  Similarity=0.311  Sum_probs=26.3

Q ss_pred             CCeEEEEcCCchHHHHHHH-HHHhCCCEEEEEeCc
Q 045248           67 QKNILVTAASGGVGHYAVQ-LAKLGNTHVTASCGA  100 (240)
Q Consensus        67 g~~vlV~G~~g~vG~~~~~-~a~~~g~~v~~~~~~  100 (240)
                      ...|+|+| +|+.|+.+.. +++..|.+|.+++..
T Consensus        33 e~DViVIG-aGpaGL~aA~~LA~~~G~~V~vlE~~   66 (278)
T d1rp0a1          33 ETDVVVVG-AGSAGLSAAYEISKNPNVQVAIIEQS   66 (278)
T ss_dssp             EEEEEEEC-CSHHHHHHHHHHHTSTTSCEEEEESS
T ss_pred             CCCEEEEC-CCHHHHHHHHHHHHccCCeEEEEecC
Confidence            35599999 8999998765 566679999999953

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=81.50  E-value=1  Score=28.14  Aligned_cols=35  Identities=11%  Similarity=0.075  Sum_probs=26.3

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCC---CEEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGN---THVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g---~~v~~~~~~  100 (240)
                      +..++++|+| +|.+|.-+...++.+|   .+|..+.+.
T Consensus        18 ~~p~~v~ivG-gG~ig~E~A~~l~~l~~~~~~Vtli~~~   55 (117)
T d1aoga2          18 EPPRRVLTVG-GGFISVEFAGIFNAYKPKDGQVTLCYRG   55 (117)
T ss_dssp             SCCSEEEEEC-SSHHHHHHHHHHHHHCCTTCEEEEEESS
T ss_pred             hcCCeEEEEC-CcHHHHHHHHHhhhcccCCcEEEEEecc
Confidence            3457999999 8999988777766554   468887753

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=81.20  E-value=0.28  Score=36.91  Aligned_cols=91  Identities=19%  Similarity=0.193  Sum_probs=51.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCC-EEEEEeCc-ccHHHHHhc------CC-----CEEEeCCCCccccccCCCCC
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNT-HVTASCGA-RNIEFVKSL------GA-----DEVLDYKTPDGAALKSPSGR  131 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~------g~-----~~v~~~~~~~~~~~~~~~~~  131 (240)
                      +..++|||+|+  |.|..+-++++..+. +|.++.-+ +=.+.+++.      ++     ..++.   .+....-...++
T Consensus        76 ~~pk~VLiiG~--G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~---~Da~~~l~~~~~  150 (312)
T d1uira_          76 PEPKRVLIVGG--GEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVI---DDARAYLERTEE  150 (312)
T ss_dssp             SCCCEEEEEEC--TTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEE---SCHHHHHHHCCC
T ss_pred             CCcceEEEeCC--CchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEE---chHHHHhhhcCC
Confidence            45589999993  345666677777655 88888854 444545432      10     11221   111111112346


Q ss_pred             cccEEE-eCC---CCC----------CccccccCCCCCcEEEE
Q 045248          132 KYDAVI-HCA---TGI----------PWSTFEPNLGTNGKVID  160 (240)
Q Consensus       132 ~~d~v~-d~~---g~~----------~~~~~~~~l~~~G~iv~  160 (240)
                      .||+|+ |..   +..          .+..+.++|+++|.++.
T Consensus       151 ~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~  193 (312)
T d1uira_         151 RYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGM  193 (312)
T ss_dssp             CEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEE
T ss_pred             cccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEE
Confidence            799996 332   211          13456789999998764

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=81.11  E-value=1.2  Score=30.54  Aligned_cols=37  Identities=24%  Similarity=0.121  Sum_probs=29.4

Q ss_pred             eEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH
Q 045248           69 NILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK  107 (240)
Q Consensus        69 ~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~  107 (240)
                      +|.|+| .|=+|+....++ +.|.+|++.+.+ ++.+.++
T Consensus         2 kI~ViG-lG~vGl~~a~~~-a~g~~V~g~Din~~~v~~l~   39 (196)
T d1dlja2           2 KIAVAG-SGYVGLSLGVLL-SLQNEVTIVDILPSKVDKIN   39 (196)
T ss_dssp             EEEEEC-CSHHHHHHHHHH-TTTSEEEEECSCHHHHHHHH
T ss_pred             EEEEEC-CChhHHHHHHHH-HCCCcEEEEECCHHHHHHHh
Confidence            588999 999999877666 469999999965 6666664

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=81.05  E-value=0.86  Score=32.79  Aligned_cols=29  Identities=24%  Similarity=0.220  Sum_probs=26.7

Q ss_pred             EEEEcCCchHHHHHHHHHHhCCCEEEEEeC
Q 045248           70 ILVTAASGGVGHYAVQLAKLGNTHVTASCG   99 (240)
Q Consensus        70 vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~   99 (240)
                      ++|+| +|+-|+.+...|...|.+|..+.+
T Consensus         4 viVIG-~G~aG~~aA~~aa~~G~~V~liE~   32 (259)
T d1onfa1           4 LIVIG-GGSGGMAAARRAARHNAKVALVEK   32 (259)
T ss_dssp             EEEEC-CSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             EEEEC-CCHHHHHHHHHHHHCCCeEEEEec
Confidence            78999 899999999999999999999985

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=80.88  E-value=2  Score=26.93  Aligned_cols=36  Identities=11%  Similarity=0.227  Sum_probs=32.2

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA  100 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~  100 (240)
                      .+..+|+|.|-+|.-|....+..+.+|-+|++-+++
T Consensus         4 ~k~trVlvQGiTG~~G~~ht~~m~~yGT~vVaGVtP   39 (119)
T d2nu7a1           4 DKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTP   39 (119)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECT
T ss_pred             cCCCcEEEEcCCCcHHHHHHHHHHHhCCceEEEEcc
Confidence            577899999999999999999999999998887765

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=80.35  E-value=2.4  Score=29.00  Aligned_cols=33  Identities=15%  Similarity=0.086  Sum_probs=24.7

Q ss_pred             cccEEEeCCCC-CCccccccCCCCCcEEEEeCCC
Q 045248          132 KYDAVIHCATG-IPWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       132 ~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      ++|+|+||+|. .....+...+..|-+-|.+..+
T Consensus       103 gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP  136 (190)
T d1k3ta1         103 GVEYVIESTGLFTAKAAAEGHLRGGARKVVISAP  136 (190)
T ss_dssp             TCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred             CCcEEEEecccccccccchhhcccCcceeeeccC
Confidence            79999999996 4466777788877666666544

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=80.02  E-value=0.34  Score=36.56  Aligned_cols=97  Identities=19%  Similarity=0.106  Sum_probs=52.6

Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHHhCCCEEEEEeCc-ccHHHHH----hcCCCEE--EeCCCCccccccCCCCCcccEEE
Q 045248           65 GQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVK----SLGADEV--LDYKTPDGAALKSPSGRKYDAVI  137 (240)
Q Consensus        65 ~~g~~vlV~G~~g~vG~~~~~~a~~~g~~v~~~~~~-~~~~~~~----~~g~~~v--~~~~~~~~~~~~~~~~~~~d~v~  137 (240)
                      .+|++||=.+ +|. |..++++++ .+.+|++++.+ ...+.++    ..|.+.+  +..+..+........++.||+|+
T Consensus       144 ~~g~rVLDl~-~gt-G~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi  220 (318)
T d1wxxa2         144 FRGERALDVF-SYA-GGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVV  220 (318)
T ss_dssp             CCEEEEEEET-CTT-THHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             hCCCeeeccC-CCC-cHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEE
Confidence            4688887665 333 334455554 34599999964 5555553    4565422  21111111111112346799887


Q ss_pred             eCC---C--CC-----------CccccccCCCCCcEEEEeCCC
Q 045248          138 HCA---T--GI-----------PWSTFEPNLGTNGKVIDITPG  164 (240)
Q Consensus       138 d~~---g--~~-----------~~~~~~~~l~~~G~iv~~g~~  164 (240)
                      ---   +  ..           .+..+++.|+|||.++.+...
T Consensus       221 ~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs  263 (318)
T d1wxxa2         221 LDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  263 (318)
T ss_dssp             ECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            421   1  11           133567789999999887653