Citrus Sinensis ID: 045261
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 227 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LRR5 | 1424 | Putative disease resistan | yes | no | 0.585 | 0.093 | 0.368 | 2e-12 | |
| Q7XA39 | 988 | Putative disease resistan | N/A | no | 0.568 | 0.130 | 0.359 | 8e-11 | |
| Q7XBQ9 | 970 | Disease resistance protei | N/A | no | 0.563 | 0.131 | 0.361 | 1e-08 | |
| Q7XA40 | 992 | Putative disease resistan | N/A | no | 0.444 | 0.101 | 0.385 | 1e-07 | |
| Q7XA42 | 979 | Putative disease resistan | N/A | no | 0.502 | 0.116 | 0.333 | 2e-06 | |
| O23530 | 1301 | Protein SUPPRESSOR OF npr | no | no | 0.740 | 0.129 | 0.254 | 0.0005 |
| >sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 8/141 (5%)
Query: 7 ISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKML 66
+SS+ + C+KL ALP + L SL L I +CP I + P GFP+NL +L I K+
Sbjct: 1241 LSSMLLSNCKKLQALPEKLFGLTSLLSLFIIKCPEIETIPGGGFPSNLRTLCISLCDKLT 1300
Query: 67 YKGLVQWGLHRLTSLRWLLIERCDES-ECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSS 125
+ ++WGL L +LR L I+ +E E FP+ + LP S+ L I F+ LK L +
Sbjct: 1301 PR--IEWGLRDLENLRNLEIDGGNEDIESFPEEGL---LPKSVFSLRISRFENLKTL--N 1353
Query: 126 SSGFHSLTSLRRLLIQDCPNL 146
GFH ++ + I C L
Sbjct: 1354 RKGFHDTKAIETMEISGCDKL 1374
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Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 67.4 bits (163), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 73/142 (51%), Gaps = 13/142 (9%)
Query: 74 GLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLT 133
L LTSLR I + P+ M TSL +L + F KNL + SL
Sbjct: 851 NLSTLTSLR---IGANYRATSLPEEMF-----TSLTNLEFLSFFDFKNLKDLPTSLTSLN 902
Query: 134 SLRRLLIQDCPNLTSLPKVGLP--SSLLDLCIFNCPNLTSLPKVGLP--SSLLELTIFDC 189
+L+RL I+ C +L S P+ GL +SL L + C L LP+ GL ++L L + C
Sbjct: 903 ALKRLQIESCDSLESFPEQGLEGLTSLTQLFVKYCKMLKCLPE-GLQHLTALTNLGVSGC 961
Query: 190 PKLRKECKRDKGKGWSKIANIP 211
P++ K C ++ G+ W KIA+IP
Sbjct: 962 PEVEKRCDKEIGEDWHKIAHIP 983
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Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 73/141 (51%), Gaps = 13/141 (9%)
Query: 75 LHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTS 134
L LTSLR I + FP+ M +L +L + + NL + SL +
Sbjct: 833 LRALTSLR---ICYNKVATSFPEEMF-----KNLANLKYLTISRCNNLKELPTSLASLNA 884
Query: 135 LRRLLIQDCPNLTSLPKVGLP--SSLLDLCIFNCPNLTSLPKVGLP--SSLLELTIFDCP 190
L+ L IQ C L SLP+ GL SSL +L + +C L LP+ GL ++L L I CP
Sbjct: 885 LKSLKIQLCCALESLPEEGLEGLSSLTELFVEHCNMLKCLPE-GLQHLTTLTSLKIRGCP 943
Query: 191 KLRKECKRDKGKGWSKIANIP 211
+L K C++ G+ W KI++IP
Sbjct: 944 QLIKRCEKGIGEDWHKISHIP 964
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Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 66/109 (60%), Gaps = 8/109 (7%)
Query: 107 SLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLP--SSLLDLCIF 164
+L++L++ + LK L +S + SL +L+ L I+ C L SLP+ GL SSL +L +
Sbjct: 882 NLIYLSVSFLENLKELPTSLA---SLNNLKCLDIRYCYALESLPEEGLEGLSSLTELFVE 938
Query: 165 NCPNLTSLPKVGLP--SSLLELTIFDCPKLRKECKRDKGKGWSKIANIP 211
+C L LP+ GL ++L L I CP+L K C++ G+ W KI++IP
Sbjct: 939 HCNMLKCLPE-GLQHLTTLTSLKIRGCPQLIKRCEKGIGEDWHKISHIP 986
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Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 9/123 (7%)
Query: 97 DGMMGMTLP----TSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV 152
D + +LP SL +L ++ +NL + SL +L+ L + C L SLP+
Sbjct: 852 DNVEATSLPEEMFKSLANLKYLKISFFRNLKELPTSLASLNALKSLKFEFCDALESLPEE 911
Query: 153 GLP--SSLLDLCIFNCPNLTSLPKVGLPSSLLELTIF--DCPKLRKECKRDKGKGWSKIA 208
G+ +SL +L + NC L LP+ GL T+ CP + K C+R G+ W KIA
Sbjct: 912 GVKGLTSLTELSVSNCMMLKCLPE-GLQHLTALTTLTITQCPIVFKRCERGIGEDWHKIA 970
Query: 209 NIP 211
+IP
Sbjct: 971 HIP 973
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Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 89/204 (43%), Gaps = 36/204 (17%)
Query: 3 LPESISS------VEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFP-------EEG 49
LP SI + +++ C+KL + P+D++ L SL+ L++ CP++ +FP +
Sbjct: 652 LPSSIQNATKLIYLDMSDCKKLESFPTDLN-LESLEYLNLTGCPNLRNFPAIKMGCSDVD 710
Query: 50 FPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLV 109
FP + + ED W + L +L +C M P L
Sbjct: 711 FPEGRNEIVV-ED--------CFWNKNLPAGLDYL--------DCLTRCMPCEFRPEQLA 753
Query: 110 HLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIFNCPNL 169
LN+ ++ K G SL SL + + + NLT +P + + L L + NC +L
Sbjct: 754 FLNVRGYKHEKLWE----GIQSLGSLEGMDLSESENLTEIPDLSKATKLESLILNNCKSL 809
Query: 170 TSLPK-VGLPSSLLELTIFDCPKL 192
+LP +G L+ L + +C L
Sbjct: 810 VTLPSTIGNLHRLVRLEMKECTGL 833
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Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 227 | ||||||
| 356554923 | 1399 | PREDICTED: putative disease resistance R | 0.828 | 0.134 | 0.423 | 1e-33 | |
| 224132254 | 552 | predicted protein [Populus trichocarpa] | 0.867 | 0.356 | 0.422 | 2e-31 | |
| 359496871 | 1284 | PREDICTED: putative disease resistance p | 0.806 | 0.142 | 0.427 | 3e-29 | |
| 147805811 | 1341 | hypothetical protein VITISV_006249 [Viti | 0.806 | 0.136 | 0.427 | 3e-29 | |
| 225465962 | 1290 | PREDICTED: putative disease resistance R | 0.801 | 0.141 | 0.425 | 8e-29 | |
| 147844597 | 1289 | hypothetical protein VITISV_035224 [Viti | 0.823 | 0.145 | 0.421 | 6e-28 | |
| 356556798 | 1228 | PREDICTED: putative disease resistance R | 0.814 | 0.150 | 0.400 | 2e-27 | |
| 359487255 | 1336 | PREDICTED: putative disease resistance p | 0.792 | 0.134 | 0.431 | 2e-27 | |
| 157280366 | 1251 | disease resistance protein R3a-like prot | 0.925 | 0.167 | 0.411 | 3e-27 | |
| 113205389 | 680 | Disease resistance protein I2, putative | 0.916 | 0.305 | 0.407 | 4e-27 |
| >gi|356554923|ref|XP_003545790.1| PREDICTED: putative disease resistance RPP13-like protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 127/222 (57%), Gaps = 34/222 (15%)
Query: 6 SISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKM 65
S+S + I CEKL ALP+ M+ L+SL++L+I CPSI FPE FP NLTSL I +
Sbjct: 1207 SLSELSIMSCEKLVALPNSMYNLDSLKELEIGYCPSIQYFPEINFPDNLTSLWINDHNAC 1266
Query: 66 LYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSS 125
+ + WGL++L+ LR L I + P +G LP++L L + F L+NLSS
Sbjct: 1267 --EAMFNWGLYKLSFLRDLTI--IGGNLFMPLEKLGTMLPSTLTSLTVQGFPHLENLSSE 1322
Query: 126 SSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIFNCPNLTSLPKVGLPSSLLELT 185
GFH LTSL +L I+NCP L LP+ GLPSSLLEL
Sbjct: 1323 --GFHKLTSLSKL-----------------------SIYNCPKLLCLPEKGLPSSLLELY 1357
Query: 186 IFDCPKLRKECKRDKGKGWSKIANIPMFLID-----DTDSEE 222
I DCP L+++C++DKG+ W KIA++P ID D+D E+
Sbjct: 1358 IQDCPFLKEQCRKDKGRDWLKIADVPYVEIDGKFIYDSDYED 1399
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224132254|ref|XP_002328223.1| predicted protein [Populus trichocarpa] gi|222837738|gb|EEE76103.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 126/225 (56%), Gaps = 28/225 (12%)
Query: 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGED 62
LP ++ + I +C+ L A+P MH L SL++L I CP IVSFPEEGFPT+LT LA D
Sbjct: 352 LPINLRRLFIIKCDGLKAIPDHMHNLMSLEELSIYYCPDIVSFPEEGFPTSLTYLAT-VD 410
Query: 63 MKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNL 122
+K+ + L WG+H+L++LR L+I+ FP MG+ LP++L L+I +F L+ L
Sbjct: 411 LKIC-ELLFNWGMHKLSALRTLIIQGGFSHISFPSVDMGVRLPSALNRLSIEDFPNLEYL 469
Query: 123 SSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIFNCPNLTSLPKVGLPSSLL 182
S SGF +L+SL RL I DCP LTS P GLPS SLL
Sbjct: 470 --SYSGFQNLSSLERLSISDCPKLTSFPGKGLPS-----------------------SLL 504
Query: 183 ELTIFDCPKLRKECKRDKGKGWSKIANIPMFLIDDTDSEEEQTPV 227
EL I CP L ++ K + K W KI +IP ID + T V
Sbjct: 505 ELRIRACPLLVQQIK-GRVKEWLKIRHIPYINIDGKVVSDPATQV 548
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359496871|ref|XP_002269699.2| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 110/213 (51%), Gaps = 30/213 (14%)
Query: 12 IRRCEKLGALPSDMHKL-NSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGL 70
IR CEKL +LP MH L SLQ L I CP I SFPE G PTNL+ L+I + L
Sbjct: 1097 IRNCEKLKSLPQGMHTLLTSLQFLHISSCPEIDSFPEGGLPTNLSKLSIIGNCSKLVANQ 1156
Query: 71 VQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFH 130
++WGL L LR L I C E E FP+ LP++L L I F LK+L + GF
Sbjct: 1157 MEWGLQTLPFLRTLAIVEC-EKERFPEERF---LPSTLTSLEIGGFPNLKSLDNK--GFQ 1210
Query: 131 SLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCP 190
LTSL L I + C NL S PK GLPSSL L I +CP
Sbjct: 1211 HLTSLETLEI-----------------------WKCGNLKSFPKQGLPSSLTRLYIKECP 1247
Query: 191 KLRKECKRDKGKGWSKIANIPMFLIDDTDSEEE 223
L+K C+R+KGK W I++IP D + EE
Sbjct: 1248 LLKKRCQRNKGKEWPNISHIPCIAFDRQTTNEE 1280
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147805811|emb|CAN60543.1| hypothetical protein VITISV_006249 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 110/213 (51%), Gaps = 30/213 (14%)
Query: 12 IRRCEKLGALPSDMHKL-NSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGL 70
IR CEKL +LP MH L SLQ L I CP I SFPE G PTNL+ L+I + L
Sbjct: 1154 IRNCEKLKSLPQGMHTLLTSLQFLHISSCPEIDSFPEGGLPTNLSKLSIIGNCSKLVANQ 1213
Query: 71 VQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFH 130
++WGL L LR L I C E E FP+ LP++L L I F LK+L + GF
Sbjct: 1214 MEWGLQTLPFLRTLAIVEC-EKERFPEERF---LPSTLTSLEIGGFPNLKSLDNK--GFQ 1267
Query: 131 SLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCP 190
LTSL L I + C NL S PK GLPSSL L I +CP
Sbjct: 1268 HLTSLETLEI-----------------------WKCGNLKSFPKQGLPSSLTRLYIKECP 1304
Query: 191 KLRKECKRDKGKGWSKIANIPMFLIDDTDSEEE 223
L+K C+R+KGK W I++IP D + EE
Sbjct: 1305 LLKKRCQRNKGKEWPNISHIPCIAFDRQTTNEE 1337
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225465962|ref|XP_002269685.1| PREDICTED: putative disease resistance RPP13-like protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 89/209 (42%), Positives = 114/209 (54%), Gaps = 27/209 (12%)
Query: 12 IRRCEKLGALPSDMHKL-NSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGL 70
I C+KL +LP MH L SL L I +CP IVSFPE G PTNL+SL IG K++ +
Sbjct: 1107 ISNCKKLKSLPQRMHTLLTSLDKLWISDCPEIVSFPEGGLPTNLSSLHIGSCYKLM-ESR 1165
Query: 71 VQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFH 130
+WGL L SLR L+I E + LP++L L+I +F LK+L + G
Sbjct: 1166 KEWGLQTLPSLRRLVIVGGTEGGLESFSEEWLLLPSTLFSLDISDFPDLKSLDNL--GLE 1223
Query: 131 SLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCP 190
+LTSL RL+I +NC L S PK GLP+SL L I+ CP
Sbjct: 1224 NLTSLERLVI-----------------------WNCDKLKSFPKQGLPASLSVLEIYRCP 1260
Query: 191 KLRKECKRDKGKGWSKIANIPMFLIDDTD 219
L+K C+RDKGK W KIA+IP + D D
Sbjct: 1261 LLKKRCQRDKGKEWRKIAHIPSIEMVDLD 1289
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147844597|emb|CAN80064.1| hypothetical protein VITISV_035224 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 114/216 (52%), Gaps = 29/216 (13%)
Query: 3 LPES-ISSVEIRRCEKLGALPSDMHKL-NSLQDLDIRECPSIVSFPEEGFPTNLTSLAIG 60
LP S + S+ IR C KL +LP MH L SL DL IR+CP IVSFPE G PTNL+SL I
Sbjct: 1095 LPASNLRSLWIRNCMKLKSLPQRMHTLLTSLDDLWIRDCPEIVSFPEGGLPTNLSSLEIW 1154
Query: 61 EDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLK 120
K++ + +WGL L SLR+L I E + LP++L +I +F LK
Sbjct: 1155 NCYKLM-ESRKEWGLQTLPSLRYLTIRGGTEEGWESFSEEWLLLPSTLFSFSIFDFPDLK 1213
Query: 121 NLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIFNCPNLTSLPKVGLPSS 180
+L + G +LTSL L I DC L S PK GLP S
Sbjct: 1214 SL--DNLGLQNLTSLEALRIVDCVKLKSFPKQGLP------------------------S 1247
Query: 181 LLELTIFDCPKLRKECKRDKGKGWSKIANIPMFLID 216
L L I CP L+K+C RDKGK W IA+IP ++D
Sbjct: 1248 LSVLEIHKCPLLKKQCLRDKGKEWRNIAHIPKIVMD 1283
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356556798|ref|XP_003546709.1| PREDICTED: putative disease resistance RPP13-like protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/212 (40%), Positives = 121/212 (57%), Gaps = 27/212 (12%)
Query: 14 RCEKLGALPSDMHKL-NSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYK---G 69
+C +L +LP MH L SL++L I++CP + SFPE G P+NL + LYK G
Sbjct: 1012 KCPQLESLPGSMHMLLPSLKELVIKDCPRVESFPEGGLPSNLKKIE-------LYKCSSG 1064
Query: 70 LVQWGLHRLTSLRWLL----------IERCDESECFPDGMMGMTLPTSLVHLNIVEFQKL 119
L++ + SL+ L I + D +E FPD + LP SL++L+I F L
Sbjct: 1065 LIRCSSGLMASLKGALGDNPSLESLGIGKLD-AESFPDEGL---LPLSLINLSIYGFPNL 1120
Query: 120 KNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIFNCPNLTSLPKVGLPS 179
K L G L+SL++L++ CPNL LP+ GLP+S+ +L I NCPNL LP+ GL +
Sbjct: 1121 KKLDYK--GLCQLSSLKKLILDGCPNLQQLPEEGLPNSISNLWIINCPNLQQLPEEGLSN 1178
Query: 180 SLLELTIFDCPKLRKECKRDKGKGWSKIANIP 211
S+ L I CP L + C+ G+ W KIA+IP
Sbjct: 1179 SISNLFIIACPNLEQRCQNPGGQDWPKIAHIP 1210
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359487255|ref|XP_002269744.2| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/211 (43%), Positives = 109/211 (51%), Gaps = 31/211 (14%)
Query: 12 IRRCEKLGALPSDMHKL-NSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGL 70
I CEKL +LP MH L SLQ L I CP I SFPE G PTNL+ L I + L
Sbjct: 1149 ILNCEKLKSLPQGMHTLLTSLQHLHISNCPEIDSFPEGGLPTNLSELDI-RNCNKLVANQ 1207
Query: 71 VQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFH 130
++WGL L LR L IE E+E FP+ LP++L L I F LK+L + G
Sbjct: 1208 MEWGLQTLPFLRTLTIEGY-ENERFPEERF---LPSTLTSLEIRGFPNLKSLDNK--GLQ 1261
Query: 131 SLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCP 190
LTSL L I++C NL S PK GLPSSL L I +CP
Sbjct: 1262 HLTSLETLRIRECGNLKSF-----------------------PKQGLPSSLSSLYIEECP 1298
Query: 191 KLRKECKRDKGKGWSKIANIPMFLIDDTDSE 221
L K C+RDKGK W KI++IP D +D E
Sbjct: 1299 LLNKRCQRDKGKEWPKISHIPCIAFDQSDME 1329
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|157280366|gb|ABV29179.1| disease resistance protein R3a-like protein [Solanum demissum] | Back alignment and taxonomy information |
|---|
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/231 (41%), Positives = 125/231 (54%), Gaps = 21/231 (9%)
Query: 6 SISSVEIRRCEKLGALPSDMHKL-NSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMK 64
I+ + I CEKL LP M +L SL++L + +CP I SFPE G P NL L I MK
Sbjct: 1018 QITYLSIGHCEKLKWLPEHMQELLPSLKELYLSKCPEIESFPEGGLPFNLQQLEIRHCMK 1077
Query: 65 MLYKGLVQWGLHRLTSLRWLLI-----ERCDESECFPDGMMGMTLP-------------T 106
L G +W L RL LR L+I ++ E P + +T+ T
Sbjct: 1078 -LVNGRKEWRLQRLPCLRDLVIVHDGSDKEIELWELPCSIQKLTVRNLKTLSGKVLKSLT 1136
Query: 107 SLVHLNIVEFQKLKN-LSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIFN 165
SL L I ++++ L S F LTSL+ L I++ PNL SL + LPSSL +L I +
Sbjct: 1137 SLECLCIGNLPQIQSMLEDRFSSFSHLTSLQSLHIRNFPNLQSLSESALPSSLSELTIKD 1196
Query: 166 CPNLTSLPKVGLPSSLLELTIFDCPKLRKECKRDKGKGWSKIANIPMFLID 216
CPNL SLP G+PSS +L I++CP LR K DKG+ W IA IP+ ID
Sbjct: 1197 CPNLQSLPVKGMPSSFSKLHIYNCPLLRPLLKFDKGEYWPNIAQIPIIYID 1247
|
Source: Solanum demissum Species: Solanum demissum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|113205389|gb|AAU90291.2| Disease resistance protein I2, putative [Solanum demissum] | Back alignment and taxonomy information |
|---|
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 95/233 (40%), Positives = 121/233 (51%), Gaps = 25/233 (10%)
Query: 7 ISSVEIRRCEKLGALPSDMHKL-NSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKM 65
++S+ I+ C+KL LP M +L SL+ LD+R CP I FPE G P NL +L I +
Sbjct: 250 MTSLRIKGCKKLKWLPERMQELLPSLKVLDLRNCPEIEFFPEGGLPFNLQALGI-RNCNK 308
Query: 66 LYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEF-----QKLK 120
L G +W L RL L L I+ D S+ G L +S+ L I Q LK
Sbjct: 309 LVNGRKEWRLQRLPCLNLLGIKH-DGSDEEIVGGENWELSSSIQRLFISNLKTLSSQVLK 367
Query: 121 NLSS-----------------SSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCI 163
+L+S F LTSL+RL I D PNL SLP+ LPSSL L I
Sbjct: 368 SLTSLQYLEIHGNLPQIQSMLEQGQFSHLTSLQRLQIIDFPNLQSLPESALPSSLSQLTI 427
Query: 164 FNCPNLTSLPKVGLPSSLLELTIFDCPKLRKECKRDKGKGWSKIANIPMFLID 216
NCP L SLP +PSSL L I+DCP L+ + +KGK W IA IP+ I+
Sbjct: 428 SNCPKLQSLPLKEMPSSLSNLEIYDCPLLKPLLEFNKGKYWPNIAQIPVIFIN 480
|
Source: Solanum demissum Species: Solanum demissum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 227 | ||||||
| TAIR|locus:2091662 | 1424 | AT3G14460 [Arabidopsis thalian | 0.806 | 0.128 | 0.302 | 6.5e-13 | |
| TAIR|locus:2094498 | 1981 | AT3G25510 [Arabidopsis thalian | 0.775 | 0.088 | 0.265 | 3.9e-06 | |
| TAIR|locus:2163426 | 1187 | TAO1 "target of AVRB operation | 0.797 | 0.152 | 0.269 | 9e-05 | |
| TAIR|locus:2076043 | 1194 | RPP1 "recognition of peronospo | 0.744 | 0.141 | 0.244 | 9e-05 | |
| TAIR|locus:2151491 | 1123 | AT5G46450 [Arabidopsis thalian | 0.444 | 0.089 | 0.288 | 0.00012 | |
| TAIR|locus:2147992 | 1189 | AT5G11250 [Arabidopsis thalian | 0.797 | 0.152 | 0.247 | 0.00036 |
| TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 185 (70.2 bits), Expect = 6.5e-13, P = 6.5e-13
Identities = 59/195 (30%), Positives = 93/195 (47%)
Query: 3 LPESISSVEIRRCEKLGALPSDM-HKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGE 61
LP+++ S+ I C+ L +LP ++ +L +L I C S+ SFP PT L +L I +
Sbjct: 1089 LPQNLQSLHIDSCDGLTSLPENLTESYPNLHELLIIACHSLESFPGSHPPTTLKTLYIRD 1148
Query: 62 DMKMLYKGLVQWGLHRLTSLRWLLI-ERCDESECFPDGMMGMTLPTSLVHLNIVEFQKXX 120
K+ + +Q + L +L I C FP ++L L L+I + +
Sbjct: 1149 CKKLNFTESLQ-PTRSYSQLEYLFIGSSCSNLVNFP-----LSLFPKLRSLSIRDCESFK 1202
Query: 121 XXXXXXXXXXXXXXXRRLLIQDCPNLTSLPKVGLPS-SLLDLCIFNCPNLTSLPK--VGL 177
L I+DCPNL + P+ GLP+ L + + NC L +LP+ GL
Sbjct: 1203 TFSIHAGLGDDRIALESLEIRDCPNLETFPQGGLPTPKLSSMLLSNCKKLQALPEKLFGL 1262
Query: 178 PSSLLELTIFDCPKL 192
+SLL L I CP++
Sbjct: 1263 -TSLLSLFIIKCPEI 1276
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| TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 136 (52.9 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 51/192 (26%), Positives = 84/192 (43%)
Query: 6 SISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKM 65
++ ++++ C L LPS + +LQ+LD+ C S+V P F N T+L I + K
Sbjct: 806 NLQNLDLGNCSSLVELPSSIGNAINLQNLDLSNCSSLVKLPS--FIGNATNLEILDLRKC 863
Query: 66 LYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTS---LVHLNIVEFQKXXXX 122
+ + +T+L W R D S C ++ LP+S + L ++
Sbjct: 864 SSLVEIPTSIGHVTNL-W----RLDLSGC--SSLV--ELPSSVGNISELQVLNLHNCSNL 914
Query: 123 XXXXXXXXXXXXXRRLLIQDCPNLTSLPK-VGLPSSLLDLCIFNCPNLTSLPK-VGLPSS 180
RL + C +L LP +G ++L +L + NC NL LP +G
Sbjct: 915 VKLPSSFGHATNLWRLDLSGCSSLVELPSSIGNITNLQELNLCNCSNLVKLPSSIGNLHL 974
Query: 181 LLELTIFDCPKL 192
L L++ C KL
Sbjct: 975 LFTLSLARCQKL 986
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| TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 123 (48.4 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 53/197 (26%), Positives = 82/197 (41%)
Query: 6 SISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKM 65
++ + + C L PS M L L+DL++ C S+V P G NL SL + D
Sbjct: 801 NLKELHLLNCSSLMECPSSMLNLTRLEDLNLSGCLSLVKLPSIGNVINLQSLYLS-DCSS 859
Query: 66 LYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKXXXXXXX 125
L + + + + T+L L ++ C P + +T SL +LN K
Sbjct: 860 LME--LPFTIENATNLDTLYLDGCSNLLELPSSIWNITNLQSL-YLNGCSSLKELPSLVE 916
Query: 126 XXXXXXXXXXRRLLIQDCPNLTSLPK-VGLPSSLLDLCIFNCPNLTSLPKVG---LPSSL 181
+ L + C +L LP + S+L L + NC +L L V +P SL
Sbjct: 917 NAINL-----QSLSLMKCSSLVELPSSIWRISNLSYLDVSNCSSLLELNLVSHPVVPDSL 971
Query: 182 LELTIFDCPKL--RKEC 196
+ L DC L R +C
Sbjct: 972 I-LDAGDCESLVQRLDC 987
|
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| TAIR|locus:2076043 RPP1 "recognition of peronospora parasitica 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 123 (48.4 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 44/180 (24%), Positives = 72/180 (40%)
Query: 6 SISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKM 65
++ +++R C L LPS + KL SLQ LD+ C S+ P T L L + +
Sbjct: 738 NLEELKLRNCSSLVELPSSIEKLTSLQILDLENCSSLEKLPAIENATKLRELKLQNCSSL 797
Query: 66 LYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKXXXXXXX 125
+ L + T+L+ L I C P + +T L + +
Sbjct: 798 IELPL---SIGTATNLKQLNISGCSSLVKLPSSIGDIT------DLEVFDLSNCSSLVTL 848
Query: 126 XXXXXXXXXXRRLLIQDCPNLTSLP-KVGLPSSLLDLCIFNCPNLTSLPKVGLPSSLLEL 184
+L+++ C L +LP + L SL L + +C L S P++ S L L
Sbjct: 849 PSSIGNLQNLCKLIMRGCSKLEALPININL-KSLDTLNLTDCSQLKSFPEISTHISELRL 907
|
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| TAIR|locus:2151491 AT5G46450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 99 (39.9 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 32/111 (28%), Positives = 56/111 (50%)
Query: 4 PESISSVEIRRCE-KLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGED 62
PE++ V+++ CE KL L +H L L+++D+R ++ P+ TNL L +
Sbjct: 604 PENL--VKLQMCESKLEKLWDGVHSLTGLRNMDLRGSENLKEIPDLSLATNLKKLDVSNC 661
Query: 63 MKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNI 113
++ L++L L+ +ERC+ E P +G+ L SL LN+
Sbjct: 662 TSLVELSSTIQNLNQLEELQ---MERCENLENLP---IGINLE-SLYCLNL 705
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| TAIR|locus:2147992 AT5G11250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 118 (46.6 bits), Expect = 0.00036, P = 0.00036
Identities = 49/198 (24%), Positives = 83/198 (41%)
Query: 12 IRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYK--- 68
+ C L LPS + +L+DLD+ C S+V P G NL L + ++
Sbjct: 706 LSNCSSLIKLPSCIGNAINLEDLDLNGCSSLVELPSFGDAINLQKLLLRYCSNLVELPSS 765
Query: 69 -----GLVQWGLHRLTSLRWLLIERCDESECFPDGMMG----MTLPTSL---VHLNIVEF 116
L + L+ +SL L + + G + LP+S+ ++L ++
Sbjct: 766 IGNAINLRELDLYYCSSLIRLPSSIGNAINLLILDLNGCSNLLELPSSIGNAINLQKLDL 825
Query: 117 QKXXXXXXXXXXXXXXXXXRRLLIQDCPNLTSLPK-VGLPSSLLDLCIFNCPNLTSLP-K 174
++ + LL+ DC +L LP +G ++L+ + + NC NL LP
Sbjct: 826 RRCAKLLELPSSIGNAINLQNLLLDDCSSLLELPSSIGNATNLVYMNLSNCSNLVELPLS 885
Query: 175 VGLPSSLLELTIFDCPKL 192
+G L EL + C KL
Sbjct: 886 IGNLQKLQELILKGCSKL 903
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.139 0.428 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 227 210 0.00080 112 3 11 22 0.50 32
31 0.48 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 6
No. of states in DFA: 601 (64 KB)
Total size of DFA: 179 KB (2102 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 17.77u 0.12s 17.89t Elapsed: 00:00:00
Total cpu time: 17.77u 0.12s 17.89t Elapsed: 00:00:01
Start: Sat May 11 08:42:14 2013 End: Sat May 11 08:42:15 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00660113 | hypothetical protein (552 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 227 | |||
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 3e-08 | |
| PRK15386 | 426 | PRK15386, PRK15386, type III secretion protein Gog | 5e-04 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 3e-08
Identities = 56/195 (28%), Positives = 85/195 (43%), Gaps = 27/195 (13%)
Query: 3 LPESIS------SVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTS 56
LP SI +++ RCE L LP+ ++ L SL L++ C + SFP+ TN++
Sbjct: 673 LPSSIQYLNKLEDLDMSRCENLEILPTGIN-LKSLYRLNLSGCSRLKSFPD--ISTNISW 729
Query: 57 LAIGEDM------KMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVH 110
L + E + + L + L + S E+ E +M M L SL
Sbjct: 730 LDLDETAIEEFPSNLRLENLDELILCEMKS------EKLWERVQPLTPLMTM-LSPSLTR 782
Query: 111 LNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPK-VGLPSSLLDLCIFNCPNL 169
L + + L L SS +L L L I++C NL +LP + L SL L + C L
Sbjct: 783 LFLSDIPSLVELPSS---IQNLHKLEHLEIENCINLETLPTGINLE-SLESLDLSGCSRL 838
Query: 170 TSLPKVGLPSSLLEL 184
+ P + S L L
Sbjct: 839 RTFPDISTNISDLNL 853
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syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|237954 PRK15386, PRK15386, type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 5e-04
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 4/56 (7%)
Query: 137 RLLIQDCPNLTSLPKVGLPSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCPKL 192
RL I+DC ++ SLP LP+ L ++ I NC NLT+LP +P L +LT+ CP++
Sbjct: 56 RLYIKDC-DIESLPV--LPNELTEITIENCNNLTTLPGS-IPEGLEKLTVCHCPEI 107
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Length = 426 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 227 | |||
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.74 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.72 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.61 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.6 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.22 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.06 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.06 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.03 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.01 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.96 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 98.96 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.92 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 98.91 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 98.88 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.88 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 98.83 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 98.81 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 98.81 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 98.79 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 98.74 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.73 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.62 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.57 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 98.51 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.51 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.49 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.47 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 98.45 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.41 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 98.4 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.34 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.34 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.31 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.3 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.25 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.23 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.19 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.1 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.06 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.05 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 97.99 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 97.95 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 97.94 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 97.88 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.87 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.71 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.64 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.43 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.43 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.37 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.36 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.33 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.15 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.27 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 96.07 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.93 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 95.9 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 95.87 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 95.75 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 95.66 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 95.65 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 95.57 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 95.56 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 95.27 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 95.25 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 95.12 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.02 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 94.64 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 93.64 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 93.16 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 91.65 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 90.64 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 85.66 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 85.53 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 81.48 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 81.48 |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-17 Score=151.86 Aligned_cols=200 Identities=26% Similarity=0.420 Sum_probs=107.5
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+++|+.|++++|..+..+|.+++++++|+.|++++|..+..+|....+++|+.|++ ++|..+. .++. ...+|++
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~L-sgc~~L~-~~p~----~~~nL~~ 729 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNL-SGCSRLK-SFPD----ISTNISW 729 (1153)
T ss_pred CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeC-CCCCCcc-cccc----ccCCcCe
Confidence 45555555555555555555555666666666666655555555444555666665 5554442 1110 0123333
Q ss_pred EEeccCCCCCccCccCc--C-------------------------CCCCCccceEEEecCCCccccCCCCCCccCCCCcc
Q 045261 84 LLIERCDESECFPDGMM--G-------------------------MTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLR 136 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~--~-------------------------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~ 136 (227)
|++.++ .+..+|.... . ...+++|+.|++++|+.+..+| .+++++++|+
T Consensus 730 L~L~~n-~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP---~si~~L~~L~ 805 (1153)
T PLN03210 730 LDLDET-AIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP---SSIQNLHKLE 805 (1153)
T ss_pred eecCCC-ccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC---hhhhCCCCCC
Confidence 333332 2222322110 0 0013466677777766666677 6677777777
Q ss_pred EEeecCCCCCccCCCCCCCCccceeeecCCCCCCCCCC---------------------CCCCCCCcEEeecCCchhhhh
Q 045261 137 RLLIQDCPNLTSLPKVGLPSSLLDLCIFNCPNLTSLPK---------------------VGLPSSLLELTIFDCPKLRKE 195 (227)
Q Consensus 137 ~L~l~~c~~l~~~~~~~~~~~L~~l~i~~c~~l~~~~~---------------------~~~~~~L~~L~l~~c~~l~~~ 195 (227)
.|++.+|+.++.+|....+++|+.|++++|..++.+|. ...+++|+.|++.+|.+++..
T Consensus 806 ~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 806 HLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred EEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCcc
Confidence 77777777777776654556667777776666554332 123567777777777777642
Q ss_pred hcccCCCCcccccccceEEeccC
Q 045261 196 CKRDKGKGWSKIANIPMFLIDDT 218 (227)
Q Consensus 196 ~~~~~~~~~~~~~~l~~~~~~~~ 218 (227)
.. ....+.++..+.+.+|
T Consensus 886 ~~-----~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 886 SL-----NISKLKHLETVDFSDC 903 (1153)
T ss_pred Cc-----ccccccCCCeeecCCC
Confidence 11 2233445555555544
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-16 Score=148.29 Aligned_cols=182 Identities=31% Similarity=0.466 Sum_probs=127.3
Q ss_pred CCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceE
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWL 84 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L 84 (227)
.+|+.|+++++ .+..++.++..+++|+.++++++..+..+|....+++|+.|++ .+|..+. .+ +..++.+++|++|
T Consensus 611 ~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L-~~c~~L~-~l-p~si~~L~~L~~L 686 (1153)
T PLN03210 611 ENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKL-SDCSSLV-EL-PSSIQYLNKLEDL 686 (1153)
T ss_pred cCCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEe-cCCCCcc-cc-chhhhccCCCCEE
Confidence 46666777664 3566666777778888888877777777776667778888888 7777764 33 3356777788888
Q ss_pred EeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCC-----------------CCc------------------
Q 045261 85 LIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSS-----------------SGF------------------ 129 (227)
Q Consensus 85 ~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-----------------~~l------------------ 129 (227)
++.+|..++.+|... .+++|+.|++++|..+..+|... ..+
T Consensus 687 ~L~~c~~L~~Lp~~i----~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 687 DMSRCENLEILPTGI----NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKL 762 (1153)
T ss_pred eCCCCCCcCccCCcC----CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhc
Confidence 888877777777654 46677777777665554443000 100
Q ss_pred ------------cCCCCccEEeecCCCCCccCCCC-CCCCccceeeecCCCCCCCCCCCCCCCCCcEEeecCCchhhh
Q 045261 130 ------------HSLTSLRRLLIQDCPNLTSLPKV-GLPSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCPKLRK 194 (227)
Q Consensus 130 ------------~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~ 194 (227)
...++|++|++++|+.+..+|.. +.+++|++|++++|..++.+|....+++|++|++++|..+..
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRT 840 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccc
Confidence 01246777777777777777764 557789999999999999888766688999999999977653
|
syringae 6; Provisional |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.2e-15 Score=136.81 Aligned_cols=177 Identities=20% Similarity=0.245 Sum_probs=92.8
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccc
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLR 82 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~ 82 (227)
+++|+.|++++|...+.+|..++++++|++|+++++.....+|.. ..+++|+.|++ +++. +.+. .+..++.+++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L-~~n~-l~~~-~p~~l~~l~~L~ 215 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL-ASNQ-LVGQ-IPRELGQMKSLK 215 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec-cCCC-CcCc-CChHHcCcCCcc
Confidence 445555555555444455556666666666666665433344444 55666666666 5432 2212 233455666666
Q ss_pred eEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC-CCCCcccee
Q 045261 83 WLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV-GLPSSLLDL 161 (227)
Q Consensus 83 ~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~l 161 (227)
+|++.++.....+|..+. .+++|++|++++|.....+| ..++++++|++|+++++.-.+.+|.. ...++|++|
T Consensus 216 ~L~L~~n~l~~~~p~~l~---~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 289 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIG---GLTSLNHLDLVYNNLTGPIP---SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL 289 (968)
T ss_pred EEECcCCccCCcCChhHh---cCCCCCEEECcCceeccccC---hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEE
Confidence 666666544444555443 45666666666644334455 55566666666666654333333332 234455666
Q ss_pred eecCCCCCCCCCCC-CCCCCCcEEeecCC
Q 045261 162 CIFNCPNLTSLPKV-GLPSSLLELTIFDC 189 (227)
Q Consensus 162 ~i~~c~~l~~~~~~-~~~~~L~~L~l~~c 189 (227)
++++|...+.+|.. ..+++|++|++.+|
T Consensus 290 ~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n 318 (968)
T PLN00113 290 DLSDNSLSGEIPELVIQLQNLEILHLFSN 318 (968)
T ss_pred ECcCCeeccCCChhHcCCCCCcEEECCCC
Confidence 66655443344331 23455555555544
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.8e-15 Score=136.06 Aligned_cols=179 Identities=18% Similarity=0.172 Sum_probs=128.1
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCcc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L 81 (227)
-+++|+.|++++|...+.+|..+.++++|++|++++|.....+|.. ..+++|+.|++ .++ .+.+. .+..++.+++|
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L-~~n-~l~~~-~p~~l~~l~~L 238 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL-GYN-NLSGE-IPYEIGGLTSL 238 (968)
T ss_pred cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC-cCC-ccCCc-CChhHhcCCCC
Confidence 3678999999998777788888999999999999988755566665 78889999999 664 44423 34457888899
Q ss_pred ceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC-CCCCccce
Q 045261 82 RWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV-GLPSSLLD 160 (227)
Q Consensus 82 ~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~ 160 (227)
++|++.+|.....+|..+. .+++|+.|+++++.....+| ..+.++++|++|++++|.-...+|.. ...++|+.
T Consensus 239 ~~L~L~~n~l~~~~p~~l~---~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 312 (968)
T PLN00113 239 NHLDLVYNNLTGPIPSSLG---NLKNLQYLFLYQNKLSGPIP---PSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI 312 (968)
T ss_pred CEEECcCceeccccChhHh---CCCCCCEEECcCCeeeccCc---hhHhhccCcCEEECcCCeeccCCChhHcCCCCCcE
Confidence 9999988755556776665 67788888888765445566 67777888888888876544445542 34567777
Q ss_pred eeecCCCCCCCCCCC-CCCCCCcEEeecCCc
Q 045261 161 LCIFNCPNLTSLPKV-GLPSSLLELTIFDCP 190 (227)
Q Consensus 161 l~i~~c~~l~~~~~~-~~~~~L~~L~l~~c~ 190 (227)
|+++++...+.+|.. ..+++|+.|++++|.
T Consensus 313 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 343 (968)
T PLN00113 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343 (968)
T ss_pred EECCCCccCCcCChhHhcCCCCCEEECcCCC
Confidence 777776655555432 345677777777654
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.5e-13 Score=97.94 Aligned_cols=155 Identities=25% Similarity=0.395 Sum_probs=118.9
Q ss_pred CCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
.+.+.|.+|+ ++++.+|..+..+.+|+.|++++ .+++.+|.. ..+++|+.|++ +.+.+ .+.|.+|++++.|+.
T Consensus 33 s~ITrLtLSH-NKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnv--gmnrl--~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 33 SNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNV--GMNRL--NILPRGFGSFPALEV 106 (264)
T ss_pred hhhhhhhccc-CceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheec--chhhh--hcCccccCCCchhhh
Confidence 4567788888 46788888899999999999987 468999988 88999999998 66777 456778999999999
Q ss_pred EEeccCCCC-CccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC-CCCCcccee
Q 045261 84 LLIERCDES-ECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV-GLPSSLLDL 161 (227)
Q Consensus 84 L~l~~~~~l-~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~l 161 (227)
|++.++..- ..+|..+. .+..|+.|.+++ +...-+| ..++.+++|+-|.+.+ +.+-++|.+ +....|++|
T Consensus 107 ldltynnl~e~~lpgnff---~m~tlralyl~d-ndfe~lp---~dvg~lt~lqil~lrd-ndll~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFF---YMTTLRALYLGD-NDFEILP---PDVGKLTNLQILSLRD-NDLLSLPKEIGDLTRLREL 178 (264)
T ss_pred hhccccccccccCCcchh---HHHHHHHHHhcC-CCcccCC---hhhhhhcceeEEeecc-CchhhCcHHHHHHHHHHHH
Confidence 999986222 23565543 566778888887 6777788 7888888888888888 566677765 667778888
Q ss_pred eecCCCCCCCCCC
Q 045261 162 CIFNCPNLTSLPK 174 (227)
Q Consensus 162 ~i~~c~~l~~~~~ 174 (227)
.|.+. .++.+|+
T Consensus 179 hiqgn-rl~vlpp 190 (264)
T KOG0617|consen 179 HIQGN-RLTVLPP 190 (264)
T ss_pred hcccc-eeeecCh
Confidence 88763 4555543
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.8e-11 Score=99.74 Aligned_cols=159 Identities=18% Similarity=0.274 Sum_probs=82.8
Q ss_pred CCCCccEEEeccCCCCCcCCc-ccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 3 LPESISSVEIRRCEKLGALPS-DMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
+++.|+.|++|. +.+.++|. ++..=.++++|++++. .++.+... ..+.+|..|.+ ++ +.++ .+++..|++++
T Consensus 147 ~l~alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkL-sr-Nrit-tLp~r~Fk~L~ 221 (873)
T KOG4194|consen 147 ALPALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKL-SR-NRIT-TLPQRSFKRLP 221 (873)
T ss_pred hHhhhhhhhhhh-chhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeec-cc-Cccc-ccCHHHhhhcc
Confidence 345566666666 34444442 2222334555555543 34444333 33444555554 32 3333 33444444444
Q ss_pred ccceEEe------------------------ccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCc
Q 045261 80 SLRWLLI------------------------ERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSL 135 (227)
Q Consensus 80 ~L~~L~l------------------------~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L 135 (227)
+|+.|++ ..+ .+..+.++.. -.+.++++|++.. +.+..+. ..|+-++++|
T Consensus 222 ~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN-~I~kL~DG~F--y~l~kme~l~L~~-N~l~~vn--~g~lfgLt~L 295 (873)
T KOG4194|consen 222 KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN-DISKLDDGAF--YGLEKMEHLNLET-NRLQAVN--EGWLFGLTSL 295 (873)
T ss_pred hhhhhhccccceeeehhhhhcCchhhhhhhhhhc-CcccccCcce--eeecccceeeccc-chhhhhh--cccccccchh
Confidence 4444444 433 3333433321 1244556666655 5555555 5677788888
Q ss_pred cEEeecCCCCCccCCC--CCCCCccceeeecCCCCCCCCCC
Q 045261 136 RRLLIQDCPNLTSLPK--VGLPSSLLDLCIFNCPNLTSLPK 174 (227)
Q Consensus 136 ~~L~l~~c~~l~~~~~--~~~~~~L~~l~i~~c~~l~~~~~ 174 (227)
++|++++ +.+..+.. +.+.++|++|+++++ .++.++.
T Consensus 296 ~~L~lS~-NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~ 334 (873)
T KOG4194|consen 296 EQLDLSY-NAIQRIHIDSWSFTQKLKELDLSSN-RITRLDE 334 (873)
T ss_pred hhhccch-hhhheeecchhhhcccceeEecccc-ccccCCh
Confidence 8888887 66776633 456778888888763 3444443
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.3e-10 Score=99.34 Aligned_cols=162 Identities=23% Similarity=0.414 Sum_probs=84.5
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
.++|+.|++++| .++.+|..+. ++|+.|+++++. +..+|.. ...+|+.|++ +++ .+. .++.. + .++|+.
T Consensus 198 p~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~-l~~~L~~L~L-s~N-~L~-~LP~~-l--~s~L~~ 266 (754)
T PRK15370 198 PEQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQ-LTSIPAT-LPDTIQEMEL-SIN-RIT-ELPER-L--PSALQS 266 (754)
T ss_pred ccCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCc-cccCChh-hhccccEEEC-cCC-ccC-cCChh-H--hCCCCE
Confidence 456777777774 5666765443 467777776653 5555542 3345666666 443 232 22211 1 134555
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCcc-------------------CCCCccEEeecCCC
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFH-------------------SLTSLRRLLIQDCP 144 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~-------------------~l~~L~~L~l~~c~ 144 (227)
|+++++ .+..+|..+ +++|+.|++++ +.+..+| ..+. -.++|+.|++++|
T Consensus 267 L~Ls~N-~L~~LP~~l-----~~sL~~L~Ls~-N~Lt~LP---~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N- 335 (754)
T PRK15370 267 LDLFHN-KISCLPENL-----PEELRYLSVYD-NSIRTLP---AHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGEN- 335 (754)
T ss_pred EECcCC-ccCcccccc-----CCCCcEEECCC-CccccCc---ccchhhHHHHHhcCCccccCCccccccceeccccCC-
Confidence 555543 444454432 23455555554 2333333 1110 1245666666663
Q ss_pred CCccCCCCCCCCccceeeecCCCCCCCCCCCCCCCCCcEEeecCCc
Q 045261 145 NLTSLPKVGLPSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCP 190 (227)
Q Consensus 145 ~l~~~~~~~~~~~L~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~c~ 190 (227)
.+..+|. ...++|+.|++++|. +..+|. .+.++|++|++++|.
T Consensus 336 ~Lt~LP~-~l~~sL~~L~Ls~N~-L~~LP~-~lp~~L~~LdLs~N~ 378 (754)
T PRK15370 336 ALTSLPA-SLPPELQVLDVSKNQ-ITVLPE-TLPPTITTLDVSRNA 378 (754)
T ss_pred ccccCCh-hhcCcccEEECCCCC-CCcCCh-hhcCCcCEEECCCCc
Confidence 4555554 234577777777653 444543 234677777777763
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.7e-11 Score=102.07 Aligned_cols=175 Identities=21% Similarity=0.279 Sum_probs=109.3
Q ss_pred CCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 4 PESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
+.+++.|+++.+ .+.++. .++.+|++|+.|++++. .+..+-.. .+.++|++|++ +. ++++ .+.+..+..++.
T Consensus 268 l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdL-s~-N~i~-~l~~~sf~~L~~ 342 (873)
T KOG4194|consen 268 LEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDL-SS-NRIT-RLDEGSFRVLSQ 342 (873)
T ss_pred ecccceeecccc-hhhhhhcccccccchhhhhccchh-hhheeecchhhhcccceeEec-cc-cccc-cCChhHHHHHHH
Confidence 345666666663 333433 45677777888877764 46655444 67788888888 44 6665 555666777777
Q ss_pred cceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCC--CCCcc
Q 045261 81 LRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVG--LPSSL 158 (227)
Q Consensus 81 L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~--~~~~L 158 (227)
|++|.++.+ .+.++.++.. ..+.+|+.||++.+.--..+.-+...+..+++|+.|.+.+ ++++.+++.. -+.+|
T Consensus 343 Le~LnLs~N-si~~l~e~af--~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~L 418 (873)
T KOG4194|consen 343 LEELNLSHN-SIDHLAEGAF--VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEAL 418 (873)
T ss_pred hhhhccccc-chHHHHhhHH--HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCccc
Confidence 777777775 5666554433 2567888888877332222321235566788888888888 6788888753 35678
Q ss_pred ceeeecCCCCCCCCCCCCC-CCCCcEEeecC
Q 045261 159 LDLCIFNCPNLTSLPKVGL-PSSLLELTIFD 188 (227)
Q Consensus 159 ~~l~i~~c~~l~~~~~~~~-~~~L~~L~l~~ 188 (227)
++|++.++. +.++....+ ...|++|.+..
T Consensus 419 E~LdL~~Na-iaSIq~nAFe~m~Lk~Lv~nS 448 (873)
T KOG4194|consen 419 EHLDLGDNA-IASIQPNAFEPMELKELVMNS 448 (873)
T ss_pred ceecCCCCc-ceeecccccccchhhhhhhcc
Confidence 888887754 344433222 23666666553
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.6e-12 Score=90.36 Aligned_cols=136 Identities=24% Similarity=0.320 Sum_probs=114.6
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccc
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLR 82 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~ 82 (227)
+.+|+.|++++ +.+.++|.+++.+++|+.|++.- ..+..+|.. +.++-|+.|++ .. +++.+...|.-|-.++.|+
T Consensus 55 l~nlevln~~n-nqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldl-ty-nnl~e~~lpgnff~m~tlr 130 (264)
T KOG0617|consen 55 LKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDL-TY-NNLNENSLPGNFFYMTTLR 130 (264)
T ss_pred hhhhhhhhccc-chhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhc-cc-cccccccCCcchhHHHHHH
Confidence 46889999998 46889999999999999999964 567778877 89999999999 65 6666565666566677788
Q ss_pred eEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC
Q 045261 83 WLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV 152 (227)
Q Consensus 83 ~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~ 152 (227)
-|.++.+ ..+.+|...+ .+.+|+.|.+.+ +.+-++| .+++.++.|++|.|.+ +.+..+|.+
T Consensus 131 alyl~dn-dfe~lp~dvg---~lt~lqil~lrd-ndll~lp---keig~lt~lrelhiqg-nrl~vlppe 191 (264)
T KOG0617|consen 131 ALYLGDN-DFEILPPDVG---KLTNLQILSLRD-NDLLSLP---KEIGDLTRLRELHIQG-NRLTVLPPE 191 (264)
T ss_pred HHHhcCC-CcccCChhhh---hhcceeEEeecc-CchhhCc---HHHHHHHHHHHHhccc-ceeeecChh
Confidence 8888886 7788999887 789999999999 7888899 9999999999999999 778888774
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3e-09 Score=95.09 Aligned_cols=136 Identities=19% Similarity=0.358 Sum_probs=96.5
Q ss_pred CCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceE
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWL 84 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L 84 (227)
.+...|.+++. .++.+|..+. ++|+.|+++++ .+..+|.. ...+|+.|++ ++ ++++ .++. .+ ..+|+.|
T Consensus 178 ~~~~~L~L~~~-~LtsLP~~Ip--~~L~~L~Ls~N-~LtsLP~~-l~~nL~~L~L-s~-N~Lt-sLP~-~l--~~~L~~L 246 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPACIP--EQITTLILDNN-ELKSLPEN-LQGNIKTLYA-NS-NQLT-SIPA-TL--PDTIQEM 246 (754)
T ss_pred cCceEEEeCCC-CcCcCCcccc--cCCcEEEecCC-CCCcCChh-hccCCCEEEC-CC-Cccc-cCCh-hh--hccccEE
Confidence 46778999984 6778886553 57999999886 58888875 4579999999 76 4565 4432 22 2479999
Q ss_pred EeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeeec
Q 045261 85 LIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIF 164 (227)
Q Consensus 85 ~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i~ 164 (227)
++++| .+..+|..+ +.+|+.|++++ +.+..+| ..+. ++|+.|++++| .+..+|.. ..++|+.|+++
T Consensus 247 ~Ls~N-~L~~LP~~l-----~s~L~~L~Ls~-N~L~~LP---~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp~sL~~L~Ls 312 (754)
T PRK15370 247 ELSIN-RITELPERL-----PSALQSLDLFH-NKISCLP---ENLP--EELRYLSVYDN-SIRTLPAH-LPSGITHLNVQ 312 (754)
T ss_pred ECcCC-ccCcCChhH-----hCCCCEEECcC-CccCccc---cccC--CCCcEEECCCC-ccccCccc-chhhHHHHHhc
Confidence 99997 677888755 46899999986 7888888 5443 58999999884 67766642 22334444444
Q ss_pred C
Q 045261 165 N 165 (227)
Q Consensus 165 ~ 165 (227)
+
T Consensus 313 ~ 313 (754)
T PRK15370 313 S 313 (754)
T ss_pred C
Confidence 3
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.4e-11 Score=106.83 Aligned_cols=132 Identities=22% Similarity=0.248 Sum_probs=98.5
Q ss_pred CCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCc
Q 045261 50 FPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGF 129 (227)
Q Consensus 50 ~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l 129 (227)
..+.|+.|.+ .+ +.+++...| .+.++.+|+.|+++++ .+..+|.... ..+..|++|++++ +.++.+| ..+
T Consensus 357 ~~~~Lq~Lyl-an-N~Ltd~c~p-~l~~~~hLKVLhLsyN-rL~~fpas~~--~kle~LeeL~LSG-NkL~~Lp---~tv 426 (1081)
T KOG0618|consen 357 NHAALQELYL-AN-NHLTDSCFP-VLVNFKHLKVLHLSYN-RLNSFPASKL--RKLEELEELNLSG-NKLTTLP---DTV 426 (1081)
T ss_pred hhHHHHHHHH-hc-Ccccccchh-hhccccceeeeeeccc-ccccCCHHHH--hchHHhHHHhccc-chhhhhh---HHH
Confidence 3445555555 33 555544444 4677888999999986 8888887654 3678889999998 8899998 888
Q ss_pred cCCCCccEEeecCCCCCccCCCCCCCCccceeeecCCCCCCCCCC-CCCC-CCCcEEeecCCchhh
Q 045261 130 HSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIFNCPNLTSLPK-VGLP-SSLLELTIFDCPKLR 193 (227)
Q Consensus 130 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i~~c~~l~~~~~-~~~~-~~L~~L~l~~c~~l~ 193 (227)
..+..|++|.-.+ +.+..+|+....+.|+.+|++. +.+..+.. .... ++|++|+++|...+.
T Consensus 427 a~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 427 ANLGRLHTLRAHS-NQLLSFPELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred HhhhhhHHHhhcC-CceeechhhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcccc
Confidence 8899999987777 7788999777888999999984 55655432 2334 899999999987643
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.4e-08 Score=82.63 Aligned_cols=163 Identities=23% Similarity=0.446 Sum_probs=96.6
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+++++.|++++| .+..+|. --.+|++|.+++|..+..+|.. .+++|+.|.+ ++|..+. .++ .+|+.
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~L-s~Cs~L~-sLP-------~sLe~ 116 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGS-IPEGLEKLTV-CHCPEIS-GLP-------ESVRS 116 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCch-hhhhhhheEc-cCccccc-ccc-------cccce
Confidence 467778888877 5666662 1235778888877777666642 4567888888 7776554 222 24666
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCC-CCccEEeecCCCCCccCCCCCCCCccceee
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSL-TSLRRLLIQDCPNLTSLPKVGLPSSLLDLC 162 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l-~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~ 162 (227)
|++... ....++. .+++|+.|.+.+++.....+ .. ..+ ++|++|++.+|..+ .+|. ..+.+|+.|+
T Consensus 117 L~L~~n-~~~~L~~------LPssLk~L~I~~~n~~~~~~---lp-~~LPsSLk~L~Is~c~~i-~LP~-~LP~SLk~L~ 183 (426)
T PRK15386 117 LEIKGS-ATDSIKN------VPNGLTSLSINSYNPENQAR---ID-NLISPSLKTLSLTGCSNI-ILPE-KLPESLQSIT 183 (426)
T ss_pred EEeCCC-CCccccc------CcchHhheeccccccccccc---cc-cccCCcccEEEecCCCcc-cCcc-cccccCcEEE
Confidence 666542 3222221 34567777775433211111 00 123 58999999988755 3443 3667899999
Q ss_pred ecCCCCC-CCCCCCCCCCCCcEEeecCCchhhh
Q 045261 163 IFNCPNL-TSLPKVGLPSSLLELTIFDCPKLRK 194 (227)
Q Consensus 163 i~~c~~l-~~~~~~~~~~~L~~L~l~~c~~l~~ 194 (227)
++.+... -.++...+.+++ .|.+.+|.++..
T Consensus 184 ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~ 215 (426)
T PRK15386 184 LHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSP 215 (426)
T ss_pred ecccccccccCccccccccc-EechhhhcccCH
Confidence 8764321 123333455677 888888866654
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-08 Score=90.35 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=10.1
Q ss_pred CccceEEEecCCCccccC
Q 045261 106 TSLVHLNIVEFQKLKNLS 123 (227)
Q Consensus 106 ~~L~~L~l~~~~~l~~l~ 123 (227)
.+|+.|++++ +.+..+|
T Consensus 342 ~~Lq~LdLS~-N~Ls~LP 358 (788)
T PRK15387 342 SGLQELSVSD-NQLASLP 358 (788)
T ss_pred cccceEecCC-CccCCCC
Confidence 3566666665 4555555
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2e-08 Score=89.70 Aligned_cols=48 Identities=27% Similarity=0.470 Sum_probs=24.4
Q ss_pred CCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEe
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAI 59 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l 59 (227)
++|+.|.+++| .++.+|. ..++|++|+++++ .+..+|. .+++|+.|++
T Consensus 222 ~~L~~L~L~~N-~Lt~LP~---lp~~Lk~LdLs~N-~LtsLP~--lp~sL~~L~L 269 (788)
T PRK15387 222 AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGN-QLTSLPV--LPPGLLELSI 269 (788)
T ss_pred cCCCEEEccCC-cCCCCCC---CCCCCcEEEecCC-ccCcccC--cccccceeec
Confidence 34555555552 3444543 2355666666554 3555543 2445555555
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.4e-09 Score=98.61 Aligned_cols=185 Identities=24% Similarity=0.247 Sum_probs=126.9
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCcc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L 81 (227)
.+|.|+.|++++|..++++|+.++.|-+|++|+++++ .+..+|.. ..+.+|.+|++ ..+..+. .+ +.....+++|
T Consensus 569 ~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl-~~~~~l~-~~-~~i~~~L~~L 644 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNL-EVTGRLE-SI-PGILLELQSL 644 (889)
T ss_pred hCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhheecc-ccccccc-cc-cchhhhcccc
Confidence 4789999999999999999999999999999999985 58899988 88899999999 7666654 32 4455669999
Q ss_pred ceEEeccCCCCCccCccCcCCCCCCccceEEEecCCC-------------------------ccccCCCCCCccCCCCcc
Q 045261 82 RWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQK-------------------------LKNLSSSSSGFHSLTSLR 136 (227)
Q Consensus 82 ~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~-------------------------l~~l~~~~~~l~~l~~L~ 136 (227)
++|.+.... ...-.........+..|+.+.+..... ..... ..+..+.+|+
T Consensus 645 r~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~---~~~~~l~~L~ 720 (889)
T KOG4658|consen 645 RVLRLPRSA-LSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLI---SSLGSLGNLE 720 (889)
T ss_pred cEEEeeccc-cccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceee---cccccccCcc
Confidence 999887642 100000000011344444444433211 11122 4556778999
Q ss_pred EEeecCCCCCccCCCC------CC-CCccceeeecCCCCCCCCCCCCCCCCCcEEeecCCchhhhh
Q 045261 137 RLLIQDCPNLTSLPKV------GL-PSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCPKLRKE 195 (227)
Q Consensus 137 ~L~l~~c~~l~~~~~~------~~-~~~L~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~~ 195 (227)
.|.|.+|...+..... .. ++++..+.+.+|..+++..+..+.++|+.|.+.+|..+.+.
T Consensus 721 ~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 721 ELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred eEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccC
Confidence 9999998765432211 11 44666777778888888877777889999999988766643
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.6e-10 Score=98.50 Aligned_cols=173 Identities=18% Similarity=0.265 Sum_probs=123.3
Q ss_pred CCCccEEEeccCCCC-CcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCcc
Q 045261 4 PESISSVEIRRCEKL-GALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l-~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L 81 (227)
+|-.+-.+++++... ..+|+.+..++.++.|.+.. +.+..+|.. +.+++|+.|.+ .. +++. .+ ...+..++.|
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr-t~L~~vPeEL~~lqkLEHLs~-~H-N~L~-~v-hGELs~Lp~L 80 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR-TKLEQVPEELSRLQKLEHLSM-AH-NQLI-SV-HGELSDLPRL 80 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEech-hhhhhChHHHHHHhhhhhhhh-hh-hhhH-hh-hhhhccchhh
Confidence 455667788887776 45888888888888888877 457788877 78888888888 44 5554 22 2346777888
Q ss_pred ceEEeccCCCCC--ccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCC--CCCc
Q 045261 82 RWLLIERCDESE--CFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVG--LPSS 157 (227)
Q Consensus 82 ~~L~l~~~~~l~--~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~--~~~~ 157 (227)
+.+.++.+ +++ -+|..+. .+..|..||++. +.++++| ..+.+-.++-.|++++ +.++++|... .++-
T Consensus 81 Rsv~~R~N-~LKnsGiP~diF---~l~dLt~lDLSh-NqL~EvP---~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtD 151 (1255)
T KOG0444|consen 81 RSVIVRDN-NLKNSGIPTDIF---RLKDLTILDLSH-NQLREVP---TNLEYAKNSIVLNLSY-NNIETIPNSLFINLTD 151 (1255)
T ss_pred HHHhhhcc-ccccCCCCchhc---ccccceeeecch-hhhhhcc---hhhhhhcCcEEEEccc-CccccCCchHHHhhHh
Confidence 88887765 333 2566554 567788888887 7888888 7888888888888888 6788887642 2344
Q ss_pred cceeeecCCCCCCCCCC-CCCCCCCcEEeecCCch
Q 045261 158 LLDLCIFNCPNLTSLPK-VGLPSSLLELTIFDCPK 191 (227)
Q Consensus 158 L~~l~i~~c~~l~~~~~-~~~~~~L~~L~l~~c~~ 191 (227)
|-.|++++ +.++.+|+ ...+..|++|++++.|.
T Consensus 152 LLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 152 LLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred Hhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChh
Confidence 55667776 45667665 34467788888888763
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.7e-10 Score=97.14 Aligned_cols=175 Identities=23% Similarity=0.314 Sum_probs=103.2
Q ss_pred CCCccEEEeccCCC-CCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCcc
Q 045261 4 PESISSVEIRRCEK-LGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81 (227)
Q Consensus 4 ~~~L~~L~l~~~~~-l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L 81 (227)
+++|+.|++++... +..+|.++..+.+|..++++. +++..+|.. -.+.+|+.|++ ++ +.++ .+. -..+...+|
T Consensus 196 mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNL-S~-N~it-eL~-~~~~~W~~l 270 (1255)
T KOG0444|consen 196 MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNL-SG-NKIT-ELN-MTEGEWENL 270 (1255)
T ss_pred chhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheecc-Cc-Ccee-eee-ccHHHHhhh
Confidence 45667777777432 235777777777888888764 456666665 66777777777 65 5554 221 134555677
Q ss_pred ceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCc--cccCCCCCCccCCCCccEEeecCCCCCccCCCC-CCCCcc
Q 045261 82 RWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKL--KNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV-GLPSSL 158 (227)
Q Consensus 82 ~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l--~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L 158 (227)
+.|+++.+ .++.+|.... .++.|+.|...+ +.+ ..+| ++++.+..|+.+..++ +.++-+|+. ..+..|
T Consensus 271 EtLNlSrN-QLt~LP~avc---KL~kL~kLy~n~-NkL~FeGiP---SGIGKL~~Levf~aan-N~LElVPEglcRC~kL 341 (1255)
T KOG0444|consen 271 ETLNLSRN-QLTVLPDAVC---KLTKLTKLYANN-NKLTFEGIP---SGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKL 341 (1255)
T ss_pred hhhccccc-hhccchHHHh---hhHHHHHHHhcc-CcccccCCc---cchhhhhhhHHHHhhc-cccccCchhhhhhHHH
Confidence 77777765 6667776653 566666666554 333 2355 5666666666666555 455555553 233455
Q ss_pred ceeeecCCCCCCCCCC-CCCCCCCcEEeecCCchhh
Q 045261 159 LDLCIFNCPNLTSLPK-VGLPSSLLELTIFDCPKLR 193 (227)
Q Consensus 159 ~~l~i~~c~~l~~~~~-~~~~~~L~~L~l~~c~~l~ 193 (227)
+.|.+.. +.+-.+|. ..+++.|+.|++...|+|.
T Consensus 342 ~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 342 QKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred HHhcccc-cceeechhhhhhcCCcceeeccCCcCcc
Confidence 5555543 33444443 3455666666666665554
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.7e-10 Score=100.39 Aligned_cols=180 Identities=23% Similarity=0.310 Sum_probs=101.0
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccc
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLR 82 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~ 82 (227)
..+|++++++. ..+..+|++++.+.+|+.+.+... .+..+|.. ...++|+.|.+ .. +.+. -+++ ....+.+|+
T Consensus 240 p~nl~~~dis~-n~l~~lp~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~-~~-nel~-yip~-~le~~~sL~ 313 (1081)
T KOG0618|consen 240 PLNLQYLDISH-NNLSNLPEWIGACANLEALNANHN-RLVALPLRISRITSLVSLSA-AY-NELE-YIPP-FLEGLKSLR 313 (1081)
T ss_pred cccceeeecch-hhhhcchHHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHh-hh-hhhh-hCCC-cccccceee
Confidence 34677777777 356677777777777777777653 23433333 33344444433 22 2221 1122 123344444
Q ss_pred eEEeccCCCCCccCccCcC-----------------------------------------------CCCCCccceEEEec
Q 045261 83 WLLIERCDESECFPDGMMG-----------------------------------------------MTLPTSLVHLNIVE 115 (227)
Q Consensus 83 ~L~l~~~~~l~~l~~~~~~-----------------------------------------------~~~~~~L~~L~l~~ 115 (227)
.|++..+ .+.++|+.+.. ..++..|+.|++++
T Consensus 314 tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy 392 (1081)
T KOG0618|consen 314 TLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY 392 (1081)
T ss_pred eeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc
Confidence 4444433 33333221100 01456677777776
Q ss_pred CCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC-CCCCccceeeecCCCCCCCCCCCCCCCCCcEEeecCCchhhh
Q 045261 116 FQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV-GLPSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCPKLRK 194 (227)
Q Consensus 116 ~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~ 194 (227)
+.+..+| ...+.++..|++|++++ ++++.+|.. .....|++|...+ +.+..+|....+++|+.+|++ |.+|++
T Consensus 393 -NrL~~fp--as~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDlS-~N~L~~ 466 (1081)
T KOG0618|consen 393 -NRLNSFP--ASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFPELAQLPQLKVLDLS-CNNLSE 466 (1081)
T ss_pred -cccccCC--HHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-CceeechhhhhcCcceEEecc-cchhhh
Confidence 6666676 56666777777777777 667777653 3344555555443 456677876778999999997 555554
Q ss_pred hh
Q 045261 195 EC 196 (227)
Q Consensus 195 ~~ 196 (227)
..
T Consensus 467 ~~ 468 (1081)
T KOG0618|consen 467 VT 468 (1081)
T ss_pred hh
Confidence 43
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.6e-11 Score=95.74 Aligned_cols=172 Identities=27% Similarity=0.308 Sum_probs=104.1
Q ss_pred CCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CC-----------------------CCCcceeEec
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GF-----------------------PTNLTSLAIG 60 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~-----------------------l~~L~~L~l~ 60 (227)
.+|..++.+. +.+.++|++++.+..|..++..+. ++..+|+. .+ +..|++++.
T Consensus 114 ~~l~~l~~s~-n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~- 190 (565)
T KOG0472|consen 114 ISLVKLDCSS-NELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDC- 190 (565)
T ss_pred hhhhhhhccc-cceeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhccc-
Confidence 3455555555 234455555555555555555442 34444443 33 445555544
Q ss_pred cCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEee
Q 045261 61 EDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLI 140 (227)
Q Consensus 61 ~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l 140 (227)
|.++-+.+++ .++.+.+|..|+++.+ .+..+|... .+..|++|+++. +.+.-+| .+...+++++..|++
T Consensus 191 --~~N~L~tlP~-~lg~l~~L~~LyL~~N-ki~~lPef~----gcs~L~Elh~g~-N~i~~lp--ae~~~~L~~l~vLDL 259 (565)
T KOG0472|consen 191 --NSNLLETLPP-ELGGLESLELLYLRRN-KIRFLPEFP----GCSLLKELHVGE-NQIEMLP--AEHLKHLNSLLVLDL 259 (565)
T ss_pred --chhhhhcCCh-hhcchhhhHHHHhhhc-ccccCCCCC----ccHHHHHHHhcc-cHHHhhH--HHHhcccccceeeec
Confidence 3333334433 3555666666666654 555556322 455666666655 5666666 344558889999999
Q ss_pred cCCCCCccCCCC-CCCCccceeeecCCCCCCCCCCC-CCCCCCcEEeecCCchhh
Q 045261 141 QDCPNLTSLPKV-GLPSSLLDLCIFNCPNLTSLPKV-GLPSSLLELTIFDCPKLR 193 (227)
Q Consensus 141 ~~c~~l~~~~~~-~~~~~L~~l~i~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l~ 193 (227)
.+ ++++++|.+ ....+|+.|++++. .+..+|.. +.+ .|+.|.+.|.|--+
T Consensus 260 Rd-Nklke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 260 RD-NKLKEVPDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNPLRT 311 (565)
T ss_pred cc-cccccCchHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCchHH
Confidence 99 789999987 44677999999974 46666653 555 89999999987443
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.3e-10 Score=89.81 Aligned_cols=126 Identities=24% Similarity=0.286 Sum_probs=105.8
Q ss_pred CCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceE
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWL 84 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L 84 (227)
+.|++|+... +.++.+|..++.+.+|..|++... .+..+|....+..|++|++ +-++++ -++.....++.++..|
T Consensus 183 ~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~--g~N~i~-~lpae~~~~L~~l~vL 257 (565)
T KOG0472|consen 183 KRLKHLDCNS-NLLETLPPELGGLESLELLYLRRN-KIRFLPEFPGCSLLKELHV--GENQIE-MLPAEHLKHLNSLLVL 257 (565)
T ss_pred HHHHhcccch-hhhhcCChhhcchhhhHHHHhhhc-ccccCCCCCccHHHHHHHh--cccHHH-hhHHHHhcccccceee
Confidence 3566777666 467889999999999999999885 5888897788999999998 436665 5555566789999999
Q ss_pred EeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCC
Q 045261 85 LIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCP 144 (227)
Q Consensus 85 ~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~ 144 (227)
+++.+ .++++|++.. .+.+|++||+++ +.+..+| ..++++ +|+.|.+.+++
T Consensus 258 DLRdN-klke~Pde~c---lLrsL~rLDlSN-N~is~Lp---~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 258 DLRDN-KLKEVPDEIC---LLRSLERLDLSN-NDISSLP---YSLGNL-HLKFLALEGNP 308 (565)
T ss_pred ecccc-ccccCchHHH---HhhhhhhhcccC-CccccCC---cccccc-eeeehhhcCCc
Confidence 99997 9999999985 789999999998 8999999 899999 99999988754
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.7e-09 Score=88.33 Aligned_cols=177 Identities=18% Similarity=0.192 Sum_probs=115.0
Q ss_pred CCCCCccEEEeccCCCCCcC---CcccCCCCCcceEeecCCCCCcccCCC---CCCCCcceeEeccCcccccccchhccc
Q 045261 2 RLPESISSVEIRRCEKLGAL---PSDMHKLNSLQDLDIRECPSIVSFPEE---GFPTNLTSLAIGEDMKMLYKGLVQWGL 75 (227)
Q Consensus 2 ~~~~~L~~L~l~~~~~l~~l---p~~~~~l~~L~~L~l~~c~~l~~~~~~---~~l~~L~~L~l~~~~~~l~~~~~~~~~ 75 (227)
+.|++++.|+++++ .+.++ -+....||+|+.|+++... +.....+ ..+++|+.|.+ ..|.--... ..+.+
T Consensus 143 k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~~lK~L~l-~~CGls~k~-V~~~~ 218 (505)
T KOG3207|consen 143 KILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLLSHLKQLVL-NSCGLSWKD-VQWIL 218 (505)
T ss_pred hhCCcceeecchhh-hHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhhhhhheEEe-ccCCCCHHH-HHHHH
Confidence 35788899999883 44443 2455789999999998854 4444433 67899999999 888765422 34456
Q ss_pred ccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCC----
Q 045261 76 HRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPK---- 151 (227)
Q Consensus 76 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~---- 151 (227)
..+|+|+.|.+.++..+........ .+..|++|++++++.+..-- ....+.++.|+.|+++.| .+.++..
T Consensus 219 ~~fPsl~~L~L~~N~~~~~~~~~~~---i~~~L~~LdLs~N~li~~~~--~~~~~~l~~L~~Lnls~t-gi~si~~~d~~ 292 (505)
T KOG3207|consen 219 LTFPSLEVLYLEANEIILIKATSTK---ILQTLQELDLSNNNLIDFDQ--GYKVGTLPGLNQLNLSST-GIASIAEPDVE 292 (505)
T ss_pred HhCCcHHHhhhhcccccceecchhh---hhhHHhhccccCCccccccc--ccccccccchhhhhcccc-CcchhcCCCcc
Confidence 7789999999998754332222222 56789999999955444321 234668899999999884 4544422
Q ss_pred ----CCCCCccceeeecCCCC--CCCCCCCCCCCCCcEEeecC
Q 045261 152 ----VGLPSSLLDLCIFNCPN--LTSLPKVGLPSSLLELTIFD 188 (227)
Q Consensus 152 ----~~~~~~L~~l~i~~c~~--l~~~~~~~~~~~L~~L~l~~ 188 (227)
...+++|+.|.+..++- ..++.....+++|+.|.+..
T Consensus 293 s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 293 SLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred chhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 13567889998887553 23333333455666665543
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.9e-07 Score=77.40 Aligned_cols=135 Identities=28% Similarity=0.409 Sum_probs=94.1
Q ss_pred CCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCC
Q 045261 26 HKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLP 105 (227)
Q Consensus 26 ~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~ 105 (227)
..+.++++|++++| .+..+| ..+.+|++|.+ .+|..++ .+ +..+ .++|++|++.+|..+..+|
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP--~LP~sLtsL~L-snc~nLt-sL-P~~L--P~nLe~L~Ls~Cs~L~sLP--------- 111 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLP--VLPNELTEITI-ENCNNLT-TL-PGSI--PEGLEKLTVCHCPEISGLP--------- 111 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccC--CCCCCCcEEEc-cCCCCcc-cC-Cchh--hhhhhheEccCcccccccc---------
Confidence 34788999999999 688888 46778999999 9999985 33 2223 3589999999987776554
Q ss_pred CccceEEEec--CCCccccCCCCCCccCCCCccEEeecCCCCCc--cCCCCCCCCccceeeecCCCCCCCCCCCCCCCCC
Q 045261 106 TSLVHLNIVE--FQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLT--SLPKVGLPSSLLDLCIFNCPNLTSLPKVGLPSSL 181 (227)
Q Consensus 106 ~~L~~L~l~~--~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~--~~~~~~~~~~L~~l~i~~c~~l~~~~~~~~~~~L 181 (227)
++|+.|++.. +..+..+| ++|+.|.+.+++... .++ ...+++|++|++.+|..+. +| ..++.+|
T Consensus 112 ~sLe~L~L~~n~~~~L~~LP---------ssLk~L~I~~~n~~~~~~lp-~~LPsSLk~L~Is~c~~i~-LP-~~LP~SL 179 (426)
T PRK15386 112 ESVRSLEIKGSATDSIKNVP---------NGLTSLSINSYNPENQARID-NLISPSLKTLSLTGCSNII-LP-EKLPESL 179 (426)
T ss_pred cccceEEeCCCCCcccccCc---------chHhheeccccccccccccc-cccCCcccEEEecCCCccc-Cc-ccccccC
Confidence 4577777754 22344444 367788875533221 122 1356799999999998664 23 2366899
Q ss_pred cEEeecCC
Q 045261 182 LELTIFDC 189 (227)
Q Consensus 182 ~~L~l~~c 189 (227)
+.|.+..+
T Consensus 180 k~L~ls~n 187 (426)
T PRK15386 180 QSITLHIE 187 (426)
T ss_pred cEEEeccc
Confidence 99999865
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.3e-10 Score=89.70 Aligned_cols=192 Identities=15% Similarity=0.177 Sum_probs=101.5
Q ss_pred ccEEEeccCCCCCcCC--cccCCCCCcceEeecCCCCCcccCCC---CCCCCcceeEeccCcccccccchhcccccCCcc
Q 045261 7 ISSVEIRRCEKLGALP--SDMHKLNSLQDLDIRECPSIVSFPEE---GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81 (227)
Q Consensus 7 L~~L~l~~~~~l~~lp--~~~~~l~~L~~L~l~~c~~l~~~~~~---~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L 81 (227)
|+.|.+.||...+.-+ ....+++++++|.+.+|..+++-.-. .++++|+.+++ ..|..+++.........+++|
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L-~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNL-HSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhh-cccchhHHHHHHHHHHhhhhH
Confidence 5667777776554322 34467777777777777765543222 56777777777 777777755555445567777
Q ss_pred ceEEeccCCCCCccC--ccCcCCCCCCccceEEEecCCCccc--cCCCCCCccCCCCccEEeecCCCCCccCCCC---CC
Q 045261 82 RWLLIERCDESECFP--DGMMGMTLPTSLVHLNIVEFQKLKN--LSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV---GL 154 (227)
Q Consensus 82 ~~L~l~~~~~l~~l~--~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~---~~ 154 (227)
++++++.|+.+..-. .-.. .+..++.+...+|..+.. +- ..-.+..-+.++++..|..+++.... ..
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~r---G~~~l~~~~~kGC~e~~le~l~---~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~ 292 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQR---GCKELEKLSLKGCLELELEALL---KAAAYCLEILKLNLQHCNQLTDEDLWLIACG 292 (483)
T ss_pred HHhhhccCchhhcCcchHHhc---cchhhhhhhhcccccccHHHHH---HHhccChHhhccchhhhccccchHHHHHhhh
Confidence 777777776655410 0000 122344444444443321 10 11113334455555555555444321 12
Q ss_pred CCccceeeecCCCCCCCCCC---CCCCCCCcEEeecCCchhhhhhcccCCCCcc
Q 045261 155 PSSLLDLCIFNCPNLTSLPK---VGLPSSLLELTIFDCPKLRKECKRDKGKGWS 205 (227)
Q Consensus 155 ~~~L~~l~i~~c~~l~~~~~---~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 205 (227)
...|+.++.++|..+++... ...+.+|+.|.+++|..+..+....-+..++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~ 346 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP 346 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh
Confidence 33556666666666554432 1235666666666666665554443333333
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.2e-08 Score=79.67 Aligned_cols=175 Identities=20% Similarity=0.139 Sum_probs=81.5
Q ss_pred CCCccEEEeccCCCC------CcCCcccCCCCCcceEeecCCCCCcccCCC-CCC---CCcceeEeccCcccccccch--
Q 045261 4 PESISSVEIRRCEKL------GALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFP---TNLTSLAIGEDMKMLYKGLV-- 71 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l------~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l---~~L~~L~l~~~~~~l~~~~~-- 71 (227)
.++++.++++++..- ..++..+..+++|+.|++++|......+.. ..+ ++|+.|++ ++|. +.+...
T Consensus 50 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l-s~~~-~~~~~~~~ 127 (319)
T cd00116 50 QPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKL-NNNG-LGDRGLRL 127 (319)
T ss_pred CCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEe-eCCc-cchHHHHH
Confidence 345677777664322 112234455667777777766533211111 111 44777777 5543 221111
Q ss_pred -hcccccC-CccceEEeccCCCCC-----ccCccCcCCCCCCccceEEEecCCCcc-----ccCCCCCCccCCCCccEEe
Q 045261 72 -QWGLHRL-TSLRWLLIERCDESE-----CFPDGMMGMTLPTSLVHLNIVEFQKLK-----NLSSSSSGFHSLTSLRRLL 139 (227)
Q Consensus 72 -~~~~~~l-~~L~~L~l~~~~~l~-----~l~~~~~~~~~~~~L~~L~l~~~~~l~-----~l~~~~~~l~~l~~L~~L~ 139 (227)
...+..+ ++|+.|++++|. +. .+...+. .+++|++|++++|. +. .++ ..+..+++|++|+
T Consensus 128 l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~---~~~~L~~L~l~~n~-l~~~~~~~l~---~~l~~~~~L~~L~ 199 (319)
T cd00116 128 LAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALR---ANRDLKELNLANNG-IGDAGIRALA---EGLKANCNLEVLD 199 (319)
T ss_pred HHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHH---hCCCcCEEECcCCC-CchHHHHHHH---HHHHhCCCCCEEe
Confidence 1123344 667777777662 32 1222221 34567777776643 32 122 2233445677777
Q ss_pred ecCCCCCccCC-----C-CCCCCccceeeecCCCCCCCCC-----CC--CCCCCCcEEeecCCc
Q 045261 140 IQDCPNLTSLP-----K-VGLPSSLLDLCIFNCPNLTSLP-----KV--GLPSSLLELTIFDCP 190 (227)
Q Consensus 140 l~~c~~l~~~~-----~-~~~~~~L~~l~i~~c~~l~~~~-----~~--~~~~~L~~L~l~~c~ 190 (227)
+++|. +.... . ....++|++|++++|+. ++.. .. ...++|++|++.+|.
T Consensus 200 L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~l-~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 200 LNNNG-LTDEGASALAETLASLKSLEVLNLGDNNL-TDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred ccCCc-cChHHHHHHHHHhcccCCCCEEecCCCcC-chHHHHHHHHHHhccCCCceEEEccCCC
Confidence 76653 32111 1 01345666677666542 2110 00 012566777776663
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.9e-09 Score=87.68 Aligned_cols=64 Identities=17% Similarity=0.197 Sum_probs=34.8
Q ss_pred CCCCccEEEeccCCCCCcCC--cccCCCCCcceEeecCCCCCcccCCC---CCCCCcceeEeccCccccc
Q 045261 3 LPESISSVEIRRCEKLGALP--SDMHKLNSLQDLDIRECPSIVSFPEE---GFPTNLTSLAIGEDMKMLY 67 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp--~~~~~l~~L~~L~l~~c~~l~~~~~~---~~l~~L~~L~l~~~~~~l~ 67 (227)
.+||+++|.+.+|.+++.-. +.-.++++|+++++..|..+++.... ..+++|+.+++ ++|..+.
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNl-Swc~qi~ 230 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNL-SWCPQIS 230 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhh-ccCchhh
Confidence 35666666666666555321 11235566666666666555443211 45566666666 6665555
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.8e-08 Score=88.86 Aligned_cols=178 Identities=23% Similarity=0.264 Sum_probs=101.9
Q ss_pred CCCccEEEeccCCC-CCcCC-cccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 4 PESISSVEIRRCEK-LGALP-SDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 4 ~~~L~~L~l~~~~~-l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
+++|+.|-+.++.. +..++ +.+..++.|+.|++++|..+..+|.. +.+-+|+.|++ +++. +. . .|.+++++..
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L-~~t~-I~-~-LP~~l~~Lk~ 619 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL-SDTG-IS-H-LPSGLGNLKK 619 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc-cCCC-cc-c-cchHHHHHHh
Confidence 34566666666542 44444 33677888888888888888888888 78888888888 6643 32 3 4557888888
Q ss_pred cceEEeccCCCCCccCccCcCCCCCCccceEEEecCC-CccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCC---
Q 045261 81 LRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQ-KLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPS--- 156 (227)
Q Consensus 81 L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~-~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~--- 156 (227)
|.+|++.....+..++.... .+++|++|.+..-. .....- ...+.++.+|+.+.+..... ..+.......
T Consensus 620 L~~Lnl~~~~~l~~~~~i~~---~L~~Lr~L~l~~s~~~~~~~~--l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~ 693 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESIPGILL---ELQSLRVLRLPRSALSNDKLL--LKELENLEHLENLSITISSV-LLLEDLLGMTRLR 693 (889)
T ss_pred hheeccccccccccccchhh---hcccccEEEeeccccccchhh--HHhhhcccchhhheeecchh-HhHhhhhhhHHHH
Confidence 88888887766666644332 47888888887632 111111 13344555555555544322 0000001111
Q ss_pred -ccceeeecCCCCCCCCCCCCCCCCCcEEeecCCch
Q 045261 157 -SLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCPK 191 (227)
Q Consensus 157 -~L~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~c~~ 191 (227)
..+.+.+.+|...........+.+|+.|.+.+|..
T Consensus 694 ~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~ 729 (889)
T KOG4658|consen 694 SLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGI 729 (889)
T ss_pred HHhHhhhhcccccceeecccccccCcceEEEEcCCC
Confidence 11222222233333333334456677777776654
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.4e-09 Score=89.34 Aligned_cols=164 Identities=26% Similarity=0.370 Sum_probs=118.3
Q ss_pred EEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccceEEecc
Q 045261 10 VEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIER 88 (227)
Q Consensus 10 L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 88 (227)
.+++.+ ...++|..+..|..|+.+.++.. .+..+|.. ..+..|.++++ +. ++++ . .+..+..++ |+.|.+++
T Consensus 80 aDlsrN-R~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~l-s~-NqlS-~-lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 80 ADLSRN-RFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDL-SS-NQLS-H-LPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhcccc-ccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhh-cc-chhh-c-CChhhhcCc-ceeEEEec
Confidence 455553 45567777777888888877663 47777777 78888888888 44 6664 3 344577776 88888887
Q ss_pred CCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeeecCCCC
Q 045261 89 CDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIFNCPN 168 (227)
Q Consensus 89 ~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i~~c~~ 168 (227)
+ .++.+|.+.+ ..+.|..||.+. +.+..+| ..++++.+|+.|.+.. +++..+|++...-.|..||++ |++
T Consensus 153 N-kl~~lp~~ig---~~~tl~~ld~s~-nei~slp---sql~~l~slr~l~vrR-n~l~~lp~El~~LpLi~lDfS-cNk 222 (722)
T KOG0532|consen 153 N-KLTSLPEEIG---LLPTLAHLDVSK-NEIQSLP---SQLGYLTSLRDLNVRR-NHLEDLPEELCSLPLIRLDFS-CNK 222 (722)
T ss_pred C-ccccCCcccc---cchhHHHhhhhh-hhhhhch---HHhhhHHHHHHHHHhh-hhhhhCCHHHhCCceeeeecc-cCc
Confidence 5 8888998887 678888888876 6788888 7788888888888877 667777775433345566665 677
Q ss_pred CCCCCCC-CCCCCCcEEeecCCc
Q 045261 169 LTSLPKV-GLPSSLLELTIFDCP 190 (227)
Q Consensus 169 l~~~~~~-~~~~~L~~L~l~~c~ 190 (227)
+..+|.. ..++.|++|.+.+.|
T Consensus 223 is~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 223 ISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred eeecchhhhhhhhheeeeeccCC
Confidence 7777763 446778888887765
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.2e-08 Score=80.38 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=14.8
Q ss_pred CccEEEeccCCCC----CcCCcccCCCCCcceEeecCC
Q 045261 6 SISSVEIRRCEKL----GALPSDMHKLNSLQDLDIREC 39 (227)
Q Consensus 6 ~L~~L~l~~~~~l----~~lp~~~~~l~~L~~L~l~~c 39 (227)
+|+.|++++|..- ..++..+...++|++++++++
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~ 61 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN 61 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccc
Confidence 3555555554321 113333444445555555443
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.2e-07 Score=70.17 Aligned_cols=106 Identities=21% Similarity=0.277 Sum_probs=25.3
Q ss_pred CCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCC
Q 045261 27 KLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLP 105 (227)
Q Consensus 27 ~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~ 105 (227)
+..+++.|++.++ .+..+... ..+.+|+.|++ ++ +.++ .+ .++..+++|+.|+++++ .++++...+. ..+
T Consensus 17 n~~~~~~L~L~~n-~I~~Ie~L~~~l~~L~~L~L-s~-N~I~-~l--~~l~~L~~L~~L~L~~N-~I~~i~~~l~--~~l 87 (175)
T PF14580_consen 17 NPVKLRELNLRGN-QISTIENLGATLDKLEVLDL-SN-NQIT-KL--EGLPGLPRLKTLDLSNN-RISSISEGLD--KNL 87 (175)
T ss_dssp --------------------S--TT-TT--EEE--TT-S--S-----TT----TT--EEE--SS----S-CHHHH--HH-
T ss_pred ccccccccccccc-ccccccchhhhhcCCCEEEC-CC-CCCc-cc--cCccChhhhhhcccCCC-CCCccccchH--HhC
Confidence 3445666666664 34444433 24556666666 44 3333 21 23555566666666654 5555543221 024
Q ss_pred CccceEEEecCCCccccCCCCCCccCCCCccEEeecCC
Q 045261 106 TSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDC 143 (227)
Q Consensus 106 ~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c 143 (227)
|+|++|.+++ +.+.++.. ...++.+++|+.|++.++
T Consensus 88 p~L~~L~L~~-N~I~~l~~-l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 88 PNLQELYLSN-NKISDLNE-LEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp TT--EEE-TT-S---SCCC-CGGGGG-TT--EEE-TT-
T ss_pred CcCCEEECcC-CcCCChHH-hHHHHcCCCcceeeccCC
Confidence 5666666655 44444420 123445556666666553
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.2e-08 Score=82.56 Aligned_cols=79 Identities=19% Similarity=0.296 Sum_probs=38.7
Q ss_pred CccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCccceeeecCCCCCCCCCCCCC--CCCC
Q 045261 106 TSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLLDLCIFNCPNLTSLPKVGL--PSSL 181 (227)
Q Consensus 106 ~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l~i~~c~~l~~~~~~~~--~~~L 181 (227)
++|+.|++++ +.++.+. ..+|....++++|.+.. +++..+... .-..+|+.|+++++ .++.+.+..+ ..+|
T Consensus 274 ~~L~~lnlsn-N~i~~i~--~~aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 274 PNLRKLNLSN-NKITRIE--DGAFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGAFQTLFSL 348 (498)
T ss_pred ccceEeccCC-Cccchhh--hhhhcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCC-eeEEEeccccccccee
Confidence 3444444444 3444443 34444444444444444 344444332 12356777777763 3454444333 4567
Q ss_pred cEEeecCC
Q 045261 182 LELTIFDC 189 (227)
Q Consensus 182 ~~L~l~~c 189 (227)
.+|.+.+.
T Consensus 349 ~~l~l~~N 356 (498)
T KOG4237|consen 349 STLNLLSN 356 (498)
T ss_pred eeeehccC
Confidence 77777653
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.7e-09 Score=84.57 Aligned_cols=182 Identities=15% Similarity=0.148 Sum_probs=106.8
Q ss_pred CccEEEeccCCCCCc--CCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccc
Q 045261 6 SISSVEIRRCEKLGA--LPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLR 82 (227)
Q Consensus 6 ~L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~ 82 (227)
.||+|++++ ..++. +-..+..+.+|+.|.+.+...-..+... ..-.+|+.+++ +.|+.++.......+.+++.|.
T Consensus 186 Rlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnl-sm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNL-SMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcch-hheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecc-ccccccchhHHHHHHHhhhhHh
Confidence 477777777 33331 1123356677777777765432333222 44577888888 8888777555455567788888
Q ss_pred eEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccC--CCCCCCCccce
Q 045261 83 WLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSL--PKVGLPSSLLD 160 (227)
Q Consensus 83 ~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~--~~~~~~~~L~~ 160 (227)
.|+++.|...++.-.... .-.-++|..|.+++|..--...+.+.-..++|+|.+|++++|..++.- .+...++-|++
T Consensus 264 ~LNlsWc~l~~~~Vtv~V-~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAV-AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred hcCchHhhccchhhhHHH-hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 888887754443211110 012356777777776432221111133447788888888888777651 11123567888
Q ss_pred eeecCCCCCCCC--CCCCCCCCCcEEeecCCc
Q 045261 161 LCIFNCPNLTSL--PKVGLPSSLLELTIFDCP 190 (227)
Q Consensus 161 l~i~~c~~l~~~--~~~~~~~~L~~L~l~~c~ 190 (227)
+.++.|-.+..- -...-.|+|.+|++.||-
T Consensus 343 lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 343 LSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 888888755321 112336889999999874
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.5e-07 Score=75.14 Aligned_cols=169 Identities=24% Similarity=0.343 Sum_probs=105.8
Q ss_pred CCccEEEeccCCCCCcCCcccCCCC-CcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccc
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLN-SLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLR 82 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~-~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~ 82 (227)
+.++.|.+.+ ..+++++.....++ +|+.|++++. .+..++.. ..+++|+.|++ +. +++. .+ +...+..++|+
T Consensus 116 ~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l-~~-N~l~-~l-~~~~~~~~~L~ 189 (394)
T COG4886 116 TNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDL-SF-NDLS-DL-PKLLSNLSNLN 189 (394)
T ss_pred cceeEEecCC-cccccCccccccchhhccccccccc-chhhhhhhhhcccccccccc-CC-chhh-hh-hhhhhhhhhhh
Confidence 4566777777 45677777667774 7888888774 46666433 77888888888 65 3443 22 22233677788
Q ss_pred eEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCC-CCCCCcccee
Q 045261 83 WLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPK-VGLPSSLLDL 161 (227)
Q Consensus 83 ~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~l 161 (227)
.|+++++ .+..+|.... .+..|+++.+.+ +.+..++ ..+..+.++..+.+.+ +.+..++. .+..++++.|
T Consensus 190 ~L~ls~N-~i~~l~~~~~---~~~~L~~l~~~~-N~~~~~~---~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L 260 (394)
T COG4886 190 NLDLSGN-KISDLPPEIE---LLSALEELDLSN-NSIIELL---SSLSNLKNLSGLELSN-NKLEDLPESIGNLSNLETL 260 (394)
T ss_pred heeccCC-ccccCchhhh---hhhhhhhhhhcC-Ccceecc---hhhhhcccccccccCC-ceeeeccchhcccccccee
Confidence 8888876 7777777542 344578887776 3344444 5566666777666555 44444222 2445567777
Q ss_pred eecCCCCCCCCCCCCCCCCCcEEeecCC
Q 045261 162 CIFNCPNLTSLPKVGLPSSLLELTIFDC 189 (227)
Q Consensus 162 ~i~~c~~l~~~~~~~~~~~L~~L~l~~c 189 (227)
+++++ .+.+++..+-..+++.|++.+.
T Consensus 261 ~~s~n-~i~~i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 261 DLSNN-QISSISSLGSLTNLRELDLSGN 287 (394)
T ss_pred ccccc-cccccccccccCccCEEeccCc
Confidence 77753 4555555445677788887763
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.3e-06 Score=53.13 Aligned_cols=59 Identities=19% Similarity=0.283 Sum_probs=37.4
Q ss_pred CccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCC
Q 045261 79 TSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDC 143 (227)
Q Consensus 79 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c 143 (227)
++|++|++++| .+..+|.+.. ..+++|++|++++ +.+..++ ...+.++++|++|+++++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f--~~l~~L~~L~l~~-N~l~~i~--~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSF--SNLPNLETLDLSN-NNLTSIP--PDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTT--TTGTTESEEEETS-SSESEEE--TTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHH--cCCCCCCEeEccC-CccCccC--HHHHcCCCCCCEEeCcCC
Confidence 35667777766 6666665443 2566777777765 5666665 456667777777777664
|
... |
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.30 E-value=9.5e-08 Score=80.84 Aligned_cols=147 Identities=26% Similarity=0.377 Sum_probs=113.3
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccc
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLR 82 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~ 82 (227)
+..|.+|+++.+ .+..+|..+..|+ |+.|-+++. +++.+|.. +...+|..|+. +. +.+. .++ ..++.+.+|+
T Consensus 120 L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~-s~-nei~-slp-sql~~l~slr 192 (722)
T KOG0532|consen 120 LEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDV-SK-NEIQ-SLP-SQLGYLTSLR 192 (722)
T ss_pred hhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhh-hh-hhhh-hch-HHhhhHHHHH
Confidence 446778888884 4667888888888 888888874 58888877 88889999998 55 4454 343 3588899999
Q ss_pred eEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC----CCCCcc
Q 045261 83 WLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV----GLPSSL 158 (227)
Q Consensus 83 ~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~----~~~~~L 158 (227)
.|.++.+ .+.++|.+.. .+ .|.+||++ |+++..+| ..+.++..|++|.+.+ +-+++-|.. +.....
T Consensus 193 ~l~vrRn-~l~~lp~El~---~L-pLi~lDfS-cNkis~iP---v~fr~m~~Lq~l~Len-NPLqSPPAqIC~kGkVHIF 262 (722)
T KOG0532|consen 193 DLNVRRN-HLEDLPEELC---SL-PLIRLDFS-CNKISYLP---VDFRKMRHLQVLQLEN-NPLQSPPAQICEKGKVHIF 262 (722)
T ss_pred HHHHhhh-hhhhCCHHHh---CC-ceeeeecc-cCceeecc---hhhhhhhhheeeeecc-CCCCCChHHHHhccceeee
Confidence 9999986 8888999884 34 58999997 69999999 8999999999999999 456665553 233345
Q ss_pred ceeeecCCC
Q 045261 159 LDLCIFNCP 167 (227)
Q Consensus 159 ~~l~i~~c~ 167 (227)
++|++..|.
T Consensus 263 KyL~~qA~q 271 (722)
T KOG0532|consen 263 KYLSTQACQ 271 (722)
T ss_pred eeecchhcc
Confidence 777777773
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2e-08 Score=78.80 Aligned_cols=158 Identities=16% Similarity=0.225 Sum_probs=101.4
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC---CCCCCcceeEeccCcccccccchhccccc-CC
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE---GFPTNLTSLAIGEDMKMLYKGLVQWGLHR-LT 79 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~---~~l~~L~~L~l~~~~~~l~~~~~~~~~~~-l~ 79 (227)
|.+|+.|.+.|...-..+-..+..-.+|+.++++.|..+...... .+++.|..|++ ++|...++.+.. .+.+ -+
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNl-sWc~l~~~~Vtv-~V~hise 286 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNL-SWCFLFTEKVTV-AVAHISE 286 (419)
T ss_pred HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCc-hHhhccchhhhH-HHhhhch
Confidence 456777777775332333344566778999999998877765544 67888889999 888777633222 1222 25
Q ss_pred ccceEEeccCCCC---CccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCcc--CCCCCC
Q 045261 80 SLRWLLIERCDES---ECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTS--LPKVGL 154 (227)
Q Consensus 80 ~L~~L~l~~~~~l---~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~--~~~~~~ 154 (227)
+|+.|+++++..- .++..-.. .+|+|..||+++|..++.-- ...+-.++-|++|.++.|..+.. +-+-..
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~tL~~---rcp~l~~LDLSD~v~l~~~~--~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s 361 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLSTLVR---RCPNLVHLDLSDSVMLKNDC--FQEFFKFNYLQHLSLSRCYDIIPETLLELNS 361 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHHHHHH---hCCceeeeccccccccCchH--HHHHHhcchheeeehhhhcCCChHHeeeecc
Confidence 6888888875221 11111111 57889999999988776521 24556788899999988876522 122245
Q ss_pred CCccceeeecCCCC
Q 045261 155 PSSLLDLCIFNCPN 168 (227)
Q Consensus 155 ~~~L~~l~i~~c~~ 168 (227)
.++|.+|++.+|-.
T Consensus 362 ~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 362 KPSLVYLDVFGCVS 375 (419)
T ss_pred CcceEEEEeccccC
Confidence 67888888887643
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.2e-06 Score=74.97 Aligned_cols=111 Identities=16% Similarity=0.150 Sum_probs=69.1
Q ss_pred cceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCccc
Q 045261 31 LQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLV 109 (227)
Q Consensus 31 L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~ 109 (227)
++.|+++++.....+|.. ..+++|+.|++ ++ +.+.+.+ +..++.+++|+.|+++++.....+|..++ .+++|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~L-s~-N~l~g~i-P~~~~~l~~L~~LdLs~N~lsg~iP~~l~---~L~~L~ 493 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINL-SG-NSIRGNI-PPSLGSITSLEVLDLSYNSFNGSIPESLG---QLTSLR 493 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEEC-CC-CcccCcC-ChHHhCCCCCCEEECCCCCCCCCCchHHh---cCCCCC
Confidence 566777766543455554 66777777777 55 4454343 33467777778888777755556676665 677788
Q ss_pred eEEEecCCCccccCCCCCCccCC-CCccEEeecCCCCCccCC
Q 045261 110 HLNIVEFQKLKNLSSSSSGFHSL-TSLRRLLIQDCPNLTSLP 150 (227)
Q Consensus 110 ~L~l~~~~~l~~l~~~~~~l~~l-~~L~~L~l~~c~~l~~~~ 150 (227)
.|+++++.....+| ..+... .++..+++.++..+...|
T Consensus 494 ~L~Ls~N~l~g~iP---~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 494 ILNLNGNSLSGRVP---AALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred EEECcCCcccccCC---hHHhhccccCceEEecCCccccCCC
Confidence 88877755555666 555442 355667777665554443
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.19 E-value=1e-06 Score=65.14 Aligned_cols=132 Identities=17% Similarity=0.196 Sum_probs=43.2
Q ss_pred CcccCCCCCCCCcceeEeccCcccccccchhcccc-cCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCcc
Q 045261 42 IVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLH-RLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLK 120 (227)
Q Consensus 42 l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~ 120 (227)
++..+....+.++++|++ .+ +.++ .+ ..++ .+.+|+.|++++| .++.++.-. .++.|+.|++++ +.+.
T Consensus 9 i~~~~~~~n~~~~~~L~L-~~-n~I~-~I--e~L~~~l~~L~~L~Ls~N-~I~~l~~l~----~L~~L~~L~L~~-N~I~ 77 (175)
T PF14580_consen 9 IEQIAQYNNPVKLRELNL-RG-NQIS-TI--ENLGATLDKLEVLDLSNN-QITKLEGLP----GLPRLKTLDLSN-NRIS 77 (175)
T ss_dssp --------------------------------S--TT-TT--EEE-TTS---S--TT--------TT--EEE--S-S---
T ss_pred cccccccccccccccccc-cc-cccc-cc--cchhhhhcCCCEEECCCC-CCccccCcc----ChhhhhhcccCC-CCCC
Confidence 444555456667888888 55 4443 21 2344 4678888888887 777776432 578888888887 7777
Q ss_pred ccCCCCCCc-cCCCCccEEeecCCCCCccCCCC---CCCCccceeeecCCCCCCCCCC-----CCCCCCCcEEeecCC
Q 045261 121 NLSSSSSGF-HSLTSLRRLLIQDCPNLTSLPKV---GLPSSLLDLCIFNCPNLTSLPK-----VGLPSSLLELTIFDC 189 (227)
Q Consensus 121 ~l~~~~~~l-~~l~~L~~L~l~~c~~l~~~~~~---~~~~~L~~l~i~~c~~l~~~~~-----~~~~~~L~~L~l~~c 189 (227)
++. ..+ ..+++|++|++++ +++.++..- ..+++|+.|++.++|.-+. +. ...+|+|+.||-...
T Consensus 78 ~i~---~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 78 SIS---EGLDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp S-C---HHHHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEET
T ss_pred ccc---cchHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEEc
Confidence 775 444 3688888888887 667666542 3456777777777664322 21 122667777766544
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.4e-07 Score=74.54 Aligned_cols=175 Identities=16% Similarity=0.126 Sum_probs=104.7
Q ss_pred CCCccEEEeccCCCCCcCC--cccCCCCCcceEeecCCCCCccc-CCC---CCCCCcceeEeccCcccccccchhccccc
Q 045261 4 PESISSVEIRRCEKLGALP--SDMHKLNSLQDLDIRECPSIVSF-PEE---GFPTNLTSLAIGEDMKMLYKGLVQWGLHR 77 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp--~~~~~l~~L~~L~l~~c~~l~~~-~~~---~~l~~L~~L~l~~~~~~l~~~~~~~~~~~ 77 (227)
+.+|+++.+.+|. +...+ .-...|++++.|+++..- +..+ +.. ..+++|+.|++ +. +.+...........
T Consensus 120 ~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNl-s~-Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 120 LKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNL-SS-NRLSNFISSNTTLL 195 (505)
T ss_pred HHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhccc-cc-ccccCCccccchhh
Confidence 4567777777753 33333 244678888888888742 2222 211 56788888888 44 55542322223345
Q ss_pred CCccceEEeccCCCCCc--cCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccC--CCCC
Q 045261 78 LTSLRWLLIERCDESEC--FPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSL--PKVG 153 (227)
Q Consensus 78 l~~L~~L~l~~~~~l~~--l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~--~~~~ 153 (227)
+++|+.|.++.| ++.. +..-. ..+|+|+.|++..+..+..-. ....-+..|++|++++++.+..- +.-+
T Consensus 196 l~~lK~L~l~~C-Gls~k~V~~~~---~~fPsl~~L~L~~N~~~~~~~---~~~~i~~~L~~LdLs~N~li~~~~~~~~~ 268 (505)
T KOG3207|consen 196 LSHLKQLVLNSC-GLSWKDVQWIL---LTFPSLEVLYLEANEIILIKA---TSTKILQTLQELDLSNNNLIDFDQGYKVG 268 (505)
T ss_pred hhhhheEEeccC-CCCHHHHHHHH---HhCCcHHHhhhhcccccceec---chhhhhhHHhhccccCCcccccccccccc
Confidence 778888888888 4431 11111 257888888888854322211 34456678899999885544332 3346
Q ss_pred CCCccceeeecCCCCCCCC--CC------CCCCCCCcEEeecCCc
Q 045261 154 LPSSLLDLCIFNCPNLTSL--PK------VGLPSSLLELTIFDCP 190 (227)
Q Consensus 154 ~~~~L~~l~i~~c~~l~~~--~~------~~~~~~L~~L~l~~c~ 190 (227)
.++.|..|.++.|. +.++ |. ...+++|++|++...+
T Consensus 269 ~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred cccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCc
Confidence 67788887777654 2322 11 1347889999888643
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.9e-06 Score=71.19 Aligned_cols=149 Identities=19% Similarity=0.300 Sum_probs=103.4
Q ss_pred CccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccceE
Q 045261 6 SISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWL 84 (227)
Q Consensus 6 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L 84 (227)
+|+.|++++ ..+..+|..+..+++|+.|+++.++ +.+++.. ...++|+.|++ ++ +++. .++. .......|+++
T Consensus 141 nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~l-s~-N~i~-~l~~-~~~~~~~L~~l 214 (394)
T COG4886 141 NLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDL-SG-NKIS-DLPP-EIELLSALEEL 214 (394)
T ss_pred hcccccccc-cchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhheec-cC-Cccc-cCch-hhhhhhhhhhh
Confidence 899999999 4677787778999999999999864 8888876 38899999999 66 5554 3332 23455568888
Q ss_pred EeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeeec
Q 045261 85 LIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIF 164 (227)
Q Consensus 85 ~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i~ 164 (227)
.+.++. ....+.... .+.++..+.+.+ +.+..++ ..++.++++++|++++ +.+..++..+...+++.++++
T Consensus 215 ~~~~N~-~~~~~~~~~---~~~~l~~l~l~~-n~~~~~~---~~~~~l~~l~~L~~s~-n~i~~i~~~~~~~~l~~L~~s 285 (394)
T COG4886 215 DLSNNS-IIELLSSLS---NLKNLSGLELSN-NKLEDLP---ESIGNLSNLETLDLSN-NQISSISSLGSLTNLRELDLS 285 (394)
T ss_pred hhcCCc-ceecchhhh---hcccccccccCC-ceeeecc---chhccccccceecccc-ccccccccccccCccCEEecc
Confidence 888763 333444333 456666666544 5555555 6677777888888888 567777665556677777777
Q ss_pred CCCCC
Q 045261 165 NCPNL 169 (227)
Q Consensus 165 ~c~~l 169 (227)
+....
T Consensus 286 ~n~~~ 290 (394)
T COG4886 286 GNSLS 290 (394)
T ss_pred Ccccc
Confidence 65443
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.1e-05 Score=48.92 Aligned_cols=53 Identities=25% Similarity=0.473 Sum_probs=23.0
Q ss_pred CCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEe
Q 045261 5 ESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAI 59 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l 59 (227)
|+|+.|++++| .+..+| ..+.++++|++|+++++ .+..+++. ..+++|+.|++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l 56 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDL 56 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEE
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeC
Confidence 34455555553 344444 23444555555555433 23333332 33444444444
|
... |
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.99 E-value=6.8e-07 Score=70.51 Aligned_cols=123 Identities=15% Similarity=0.205 Sum_probs=51.5
Q ss_pred ccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceEEe
Q 045261 7 ISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLI 86 (227)
Q Consensus 7 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l 86 (227)
|+.+++|+ +.++.+.+++.-+|+++.|++++. .+..+.....+++|+.|++ ++ +.+. ... ..-..+.+++.|.+
T Consensus 286 LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~nLa~L~~L~~LDL-S~-N~Ls-~~~-Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 286 LTELDLSG-NLITQIDESVKLAPKLRRLILSQN-RIRTVQNLAELPQLQLLDL-SG-NLLA-ECV-GWHLKLGNIKTLKL 359 (490)
T ss_pred hhhccccc-cchhhhhhhhhhccceeEEecccc-ceeeehhhhhcccceEeec-cc-chhH-hhh-hhHhhhcCEeeeeh
Confidence 34445555 234444444555555555555543 2333333344455555555 33 2222 111 11223444555555
Q ss_pred ccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecC
Q 045261 87 ERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQD 142 (227)
Q Consensus 87 ~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~ 142 (227)
.++ .+..+.. .+ .+-+|..||+++ +.+..+. ....++++|.|+++.+.+
T Consensus 360 a~N-~iE~LSG-L~---KLYSLvnLDl~~-N~Ie~ld-eV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 360 AQN-KIETLSG-LR---KLYSLVNLDLSS-NQIEELD-EVNHIGNLPCLETLRLTG 408 (490)
T ss_pred hhh-hHhhhhh-hH---hhhhheeccccc-cchhhHH-HhcccccccHHHHHhhcC
Confidence 443 3333221 11 334455555554 3333331 013344555555555555
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.9e-07 Score=73.53 Aligned_cols=131 Identities=19% Similarity=0.363 Sum_probs=71.7
Q ss_pred CCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 4 PESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
.+.-..+.+.. +.++.+| .+|+.+++|++|+++.. .+..+.+. ..+.++..|.+ .+-++++ .++...|+.+..
T Consensus 66 P~~tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvl-yg~NkI~-~l~k~~F~gL~s 141 (498)
T KOG4237|consen 66 PPETVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVL-YGNNKIT-DLPKGAFGGLSS 141 (498)
T ss_pred CCcceEEEecc-CCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHh-hcCCchh-hhhhhHhhhHHH
Confidence 34444555555 3455555 35566666666666653 35555443 44455555555 4445554 444455556666
Q ss_pred cceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCC
Q 045261 81 LRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCP 144 (227)
Q Consensus 81 L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~ 144 (227)
++.|.+..+ .+..++.... ..+++|..|.+.+ +.+..++ ...+..+..++++.+.-.+
T Consensus 142 lqrLllNan-~i~Cir~~al--~dL~~l~lLslyD-n~~q~i~--~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 142 LQRLLLNAN-HINCIRQDAL--RDLPSLSLLSLYD-NKIQSIC--KGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHHhcChh-hhcchhHHHH--HHhhhcchhcccc-hhhhhhc--cccccchhccchHhhhcCc
Confidence 666555443 3333322211 1456777777777 6777776 3467777778877776544
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.9e-06 Score=66.29 Aligned_cols=176 Identities=13% Similarity=0.144 Sum_probs=99.9
Q ss_pred CCCCccEEEeccCCCCC--------cCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCccc-ccccchh
Q 045261 3 LPESISSVEIRRCEKLG--------ALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKM-LYKGLVQ 72 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~--------~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~-l~~~~~~ 72 (227)
|+..|.+|..++....- .+|-.+.-+++|..+.++.|. -.++... ..-+.|+++.+ ..... ......|
T Consensus 180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v-~~s~~~~~~~l~p 257 (490)
T KOG1259|consen 180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICV-HNTTIQDVPSLLP 257 (490)
T ss_pred hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc-hhheeceeecCchhheeee-ecccccccccccc
Confidence 56677788877743211 133344567888888888885 2333322 33466666665 32111 1101111
Q ss_pred c--------------------ccccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCC
Q 045261 73 W--------------------GLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSL 132 (227)
Q Consensus 73 ~--------------------~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l 132 (227)
. .+.-.+.|+.++++++ .++.+...+. ..|.++.|+++. +.+..+. .++.+
T Consensus 258 e~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N-~I~~iDESvK---L~Pkir~L~lS~-N~i~~v~----nLa~L 328 (490)
T KOG1259|consen 258 ETILADPSGSEPSTSNGSALVSADTWQELTELDLSGN-LITQIDESVK---LAPKLRRLILSQ-NRIRTVQ----NLAEL 328 (490)
T ss_pred hhhhcCccCCCCCccCCceEEecchHhhhhhcccccc-chhhhhhhhh---hccceeEEeccc-cceeeeh----hhhhc
Confidence 0 0112456788888876 6777777664 678888888887 6777664 37778
Q ss_pred CCccEEeecCCCCCccCCCC-CCCC----------------------ccceeeecCCC--CCCCCCCCCCCCCCcEEeec
Q 045261 133 TSLRRLLIQDCPNLTSLPKV-GLPS----------------------SLLDLCIFNCP--NLTSLPKVGLPSSLLELTIF 187 (227)
Q Consensus 133 ~~L~~L~l~~c~~l~~~~~~-~~~~----------------------~L~~l~i~~c~--~l~~~~~~~~~~~L~~L~l~ 187 (227)
++|++|++++ +.+..+..+ .... +|..|+++++. .++.+...+.+|.|+.+.+.
T Consensus 329 ~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 329 PQLQLLDLSG-NLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred ccceEeeccc-chhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence 8888888887 455554332 1222 34445555422 23333444556777777776
Q ss_pred CCc
Q 045261 188 DCP 190 (227)
Q Consensus 188 ~c~ 190 (227)
+.|
T Consensus 408 ~NP 410 (490)
T KOG1259|consen 408 GNP 410 (490)
T ss_pred CCC
Confidence 665
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.9e-05 Score=68.17 Aligned_cols=111 Identities=16% Similarity=0.135 Sum_probs=81.3
Q ss_pred CcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCC
Q 045261 53 NLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSL 132 (227)
Q Consensus 53 ~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l 132 (227)
.+..|++ .+ +.+.+.+ +..+..+++|+.|+++++.....+|..+. .+++|+.|+++++.....+| ..++++
T Consensus 419 ~v~~L~L-~~-n~L~g~i-p~~i~~L~~L~~L~Ls~N~l~g~iP~~~~---~l~~L~~LdLs~N~lsg~iP---~~l~~L 489 (623)
T PLN03150 419 FIDGLGL-DN-QGLRGFI-PNDISKLRHLQSINLSGNSIRGNIPPSLG---SITSLEVLDLSYNSFNGSIP---ESLGQL 489 (623)
T ss_pred EEEEEEC-CC-CCccccC-CHHHhCCCCCCEEECCCCcccCcCChHHh---CCCCCCEEECCCCCCCCCCc---hHHhcC
Confidence 3778888 65 5555444 44688999999999999855557887775 78999999999966556788 889999
Q ss_pred CCccEEeecCCCCCccCCCC--CCCCccceeeecCCCCCCCC
Q 045261 133 TSLRRLLIQDCPNLTSLPKV--GLPSSLLDLCIFNCPNLTSL 172 (227)
Q Consensus 133 ~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l~i~~c~~l~~~ 172 (227)
++|+.|+++++.--+.+|.. .....+..+++.+++.+-..
T Consensus 490 ~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred CCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCC
Confidence 99999999997655567763 12234556777766554433
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.8e-07 Score=78.10 Aligned_cols=115 Identities=18% Similarity=0.163 Sum_probs=66.2
Q ss_pred CCCccEEEeccCCCCCc--CCcccCCCCCcceEeecCC-CCCcccC----CC-CCCCCcceeEeccCcccccccchhccc
Q 045261 4 PESISSVEIRRCEKLGA--LPSDMHKLNSLQDLDIREC-PSIVSFP----EE-GFPTNLTSLAIGEDMKMLYKGLVQWGL 75 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~l~~c-~~l~~~~----~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~ 75 (227)
+++|+.|.+.+|..++. +-.....++.|+.|++++| ......+ .. ..+.+|+.+++ +.|..+++.......
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l-~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDL-SGCGLVTDIGLSALA 265 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccch-hhhhccCchhHHHHH
Confidence 56777777777777665 3344567777888877762 2222222 11 45577777777 776665544333323
Q ss_pred ccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCcc
Q 045261 76 HRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLK 120 (227)
Q Consensus 76 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~ 120 (227)
..+++|+.|.+.+|..+++...... ...+++|++|++++|..+.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i-~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSI-AERCPSLRELDLSGCHGLT 309 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHH-HHhcCcccEEeeecCccch
Confidence 3467777777666654433221111 0145677777777776653
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.71 E-value=4e-05 Score=43.10 Aligned_cols=40 Identities=18% Similarity=0.517 Sum_probs=31.4
Q ss_pred CCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccC
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFP 46 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~ 46 (227)
++|++|+++++ .++++|..+++|++|+.|++++++ +.+++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 58999999995 677888879999999999999874 66554
|
... |
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=3.6e-06 Score=72.14 Aligned_cols=91 Identities=18% Similarity=0.194 Sum_probs=64.9
Q ss_pred CCCCccEEEecc-CCCCCcCC----cccCCCCCcceEeecCCCCCcccCCC---CCCCCcceeEeccCcccccccchhcc
Q 045261 3 LPESISSVEIRR-CEKLGALP----SDMHKLNSLQDLDIRECPSIVSFPEE---GFPTNLTSLAIGEDMKMLYKGLVQWG 74 (227)
Q Consensus 3 ~~~~L~~L~l~~-~~~l~~lp----~~~~~l~~L~~L~l~~c~~l~~~~~~---~~l~~L~~L~l~~~~~~l~~~~~~~~ 74 (227)
.+++|+.|++++ |......+ .....+++|+++++++|..+.+.... ..+++|+.|.+ .+|..+++......
T Consensus 212 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l-~~c~~lt~~gl~~i 290 (482)
T KOG1947|consen 212 KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSL-SNCSNLTDEGLVSI 290 (482)
T ss_pred hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEcc-CCCCccchhHHHHH
Confidence 467899999988 33333322 23356788999999998766554433 45889999998 88887765544555
Q ss_pred cccCCccceEEeccCCCCCc
Q 045261 75 LHRLTSLRWLLIERCDESEC 94 (227)
Q Consensus 75 ~~~l~~L~~L~l~~~~~l~~ 94 (227)
...+++|++|++++|..+.+
T Consensus 291 ~~~~~~L~~L~l~~c~~~~d 310 (482)
T KOG1947|consen 291 AERCPSLRELDLSGCHGLTD 310 (482)
T ss_pred HHhcCcccEEeeecCccchH
Confidence 67788899999999877643
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=3.5e-05 Score=68.88 Aligned_cols=127 Identities=22% Similarity=0.125 Sum_probs=73.8
Q ss_pred CCCcceeEeccCcccccccchhccc-ccCCccceEEeccCCCC-CccCccCcCCCCCCccceEEEecCCCccccCCCCCC
Q 045261 51 PTNLTSLAIGEDMKMLYKGLVQWGL-HRLTSLRWLLIERCDES-ECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSG 128 (227)
Q Consensus 51 l~~L~~L~l~~~~~~l~~~~~~~~~-~~l~~L~~L~l~~~~~l-~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 128 (227)
-.+|+.|+| ++-..+. .-++..+ .-+|+|+.|.+.+-... .++..... ++|+|..|||++ .++..+ .+
T Consensus 121 r~nL~~LdI-~G~~~~s-~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~---sFpNL~sLDIS~-TnI~nl----~G 190 (699)
T KOG3665|consen 121 RQNLQHLDI-SGSELFS-NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCA---SFPNLRSLDISG-TNISNL----SG 190 (699)
T ss_pred HHhhhhcCc-cccchhh-ccHHHHHhhhCcccceEEecCceecchhHHHHhh---ccCccceeecCC-CCccCc----HH
Confidence 367777777 6644443 2222222 34788888888773221 11222232 678888888888 566666 46
Q ss_pred ccCCCCccEEeecCCCCCccCC---CCCCCCccceeeecCCCCCCCC-------CCCCCCCCCcEEeecC
Q 045261 129 FHSLTSLRRLLIQDCPNLTSLP---KVGLPSSLLDLCIFNCPNLTSL-------PKVGLPSSLLELTIFD 188 (227)
Q Consensus 129 l~~l~~L~~L~l~~c~~l~~~~---~~~~~~~L~~l~i~~c~~l~~~-------~~~~~~~~L~~L~l~~ 188 (227)
++++++|+.|.+.+.. +..-. +--.+++|+.|||+.-.....- .....+|+|+.||.++
T Consensus 191 IS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 191 ISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 7778888887777633 22211 1124677888888864333221 1133478889998886
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00011 Score=41.33 Aligned_cols=38 Identities=16% Similarity=0.410 Sum_probs=21.5
Q ss_pred ccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccC
Q 045261 107 SLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSL 149 (227)
Q Consensus 107 ~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~ 149 (227)
+|++|++++ +.+.++| ..++++++|+.|+++++ .++++
T Consensus 2 ~L~~L~l~~-N~i~~l~---~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSN-NQITDLP---PELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp T-SEEEETS-SS-SSHG---GHGTTCTTSSEEEETSS-CCSBE
T ss_pred cceEEEccC-CCCcccC---chHhCCCCCCEEEecCC-CCCCC
Confidence 566666666 4666665 44666666666666663 34443
|
... |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=3.3e-06 Score=73.83 Aligned_cols=19 Identities=32% Similarity=0.691 Sum_probs=11.9
Q ss_pred CcccCCCCCcceEeecCCC
Q 045261 22 PSDMHKLNSLQDLDIRECP 40 (227)
Q Consensus 22 p~~~~~l~~L~~L~l~~c~ 40 (227)
|-.+..+.+|++|.+.+|+
T Consensus 102 pi~ifpF~sLr~LElrg~~ 120 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCD 120 (1096)
T ss_pred CceeccccceeeEEecCcc
Confidence 4445566677777777664
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.36 E-value=4.2e-05 Score=64.74 Aligned_cols=78 Identities=22% Similarity=0.246 Sum_probs=34.3
Q ss_pred CCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceE
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWL 84 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L 84 (227)
.+|..|++.++ .+..+...+..+++|++|++++. .+..+.....+..|+.|++ .+ +.+. ....+..+.+|+.+
T Consensus 95 ~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~l~~l~~L~~L~l-~~-N~i~---~~~~~~~l~~L~~l 167 (414)
T KOG0531|consen 95 KSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFN-KITKLEGLSTLTLLKELNL-SG-NLIS---DISGLESLKSLKLL 167 (414)
T ss_pred cceeeeecccc-chhhcccchhhhhcchheecccc-ccccccchhhccchhhhee-cc-Ccch---hccCCccchhhhcc
Confidence 44444555542 33333322444555555555542 3444444444444555555 33 2332 11123334555555
Q ss_pred EeccC
Q 045261 85 LIERC 89 (227)
Q Consensus 85 ~l~~~ 89 (227)
++.++
T Consensus 168 ~l~~n 172 (414)
T KOG0531|consen 168 DLSYN 172 (414)
T ss_pred cCCcc
Confidence 55544
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=8.4e-05 Score=66.47 Aligned_cols=128 Identities=22% Similarity=0.187 Sum_probs=66.8
Q ss_pred CccEEEeccCCCCC-cCCccc-CCCCCcceEeecCCCCCc-ccCCC-CCCCCcceeEeccCcccccccchhcccccCCcc
Q 045261 6 SISSVEIRRCEKLG-ALPSDM-HKLNSLQDLDIRECPSIV-SFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81 (227)
Q Consensus 6 ~L~~L~l~~~~~l~-~lp~~~-~~l~~L~~L~l~~c~~l~-~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L 81 (227)
+|+.|+++|...+. .+|..+ ..||+|++|.+.+-.... ++... .++++|..|+| ++++--. .++++++++|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDI-S~TnI~n----l~GIS~LknL 197 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDI-SGTNISN----LSGISRLKNL 197 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeec-CCCCccC----cHHHhccccH
Confidence 56777777744332 233333 356777777776633211 22222 56777777777 7744332 2467777777
Q ss_pred ceEEeccCCCCCccC--ccCcCCCCCCccceEEEecCCCcccc--CC-CCCCccCCCCccEEeecC
Q 045261 82 RWLLIERCDESECFP--DGMMGMTLPTSLVHLNIVEFQKLKNL--SS-SSSGFHSLTSLRRLLIQD 142 (227)
Q Consensus 82 ~~L~l~~~~~l~~l~--~~~~~~~~~~~L~~L~l~~~~~l~~l--~~-~~~~l~~l~~L~~L~l~~ 142 (227)
+.|.+++. .+.... .+.. .+.+|+.||++.-.....- .. -.+.-..+|.|+.|+.++
T Consensus 198 q~L~mrnL-e~e~~~~l~~LF---~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 198 QVLSMRNL-EFESYQDLIDLF---NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HHHhccCC-CCCchhhHHHHh---cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 77777765 222211 0111 5677777777753332221 00 001222466777777765
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.15 E-value=4.2e-05 Score=64.71 Aligned_cols=126 Identities=20% Similarity=0.226 Sum_probs=86.4
Q ss_pred CccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCC-CCCCCCcceeEeccCcccccccchhcccccCCccceE
Q 045261 6 SISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPE-EGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWL 84 (227)
Q Consensus 6 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~-~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L 84 (227)
.++.+.+.. ..++.+-..+..+.+|..+++.+. .+..+.. ...+++|+.|++ ++ +.++ . ..++..++.|+.|
T Consensus 73 ~l~~l~l~~-n~i~~~~~~l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~l-s~-N~I~-~--i~~l~~l~~L~~L 145 (414)
T KOG0531|consen 73 SLKELNLRQ-NLIAKILNHLSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDL-SF-NKIT-K--LEGLSTLTLLKEL 145 (414)
T ss_pred hHHhhccch-hhhhhhhcccccccceeeeecccc-chhhcccchhhhhcchheec-cc-cccc-c--ccchhhccchhhh
Confidence 344444444 234443344678888999999874 5777777 578899999999 55 5554 2 2357778889999
Q ss_pred EeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCC-ccCCCCccEEeecCCCCCcc
Q 045261 85 LIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSG-FHSLTSLRRLLIQDCPNLTS 148 (227)
Q Consensus 85 ~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~-l~~l~~L~~L~l~~c~~l~~ 148 (227)
.+.++ .++.+.... .+++|+.+++++ +.+..+. .. +..+.+++.+++.+ +.+..
T Consensus 146 ~l~~N-~i~~~~~~~----~l~~L~~l~l~~-n~i~~ie---~~~~~~~~~l~~l~l~~-n~i~~ 200 (414)
T KOG0531|consen 146 NLSGN-LISDISGLE----SLKSLKLLDLSY-NRIVDIE---NDELSELISLEELDLGG-NSIRE 200 (414)
T ss_pred eeccC-cchhccCCc----cchhhhcccCCc-chhhhhh---hhhhhhccchHHHhccC-Cchhc
Confidence 99987 777666544 478888888888 5666665 22 46778888888877 34443
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.018 Score=43.43 Aligned_cols=102 Identities=12% Similarity=0.117 Sum_probs=62.8
Q ss_pred ccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCcc-CCCCccEEeecCCCCCccCCC---CCCC
Q 045261 80 SLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFH-SLTSLRRLLIQDCPNLTSLPK---VGLP 155 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~-~l~~L~~L~l~~c~~l~~~~~---~~~~ 155 (227)
+...++++++ .+..++..- .++.|.+|.+.+ +.+..+. ..+. .+++|+.|.+.+ +.+.++.+ -..+
T Consensus 43 ~~d~iDLtdN-dl~~l~~lp----~l~rL~tLll~n-NrIt~I~---p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~ 112 (233)
T KOG1644|consen 43 QFDAIDLTDN-DLRKLDNLP----HLPRLHTLLLNN-NRITRID---PDLDTFLPNLKTLILTN-NSIQELGDLDPLASC 112 (233)
T ss_pred ccceeccccc-chhhcccCC----CccccceEEecC-Ccceeec---cchhhhccccceEEecC-cchhhhhhcchhccC
Confidence 3455666665 444444332 467788888876 6777775 4444 456788888888 55655543 2345
Q ss_pred CccceeeecCCCCCCCCCC----CCCCCCCcEEeecCCch
Q 045261 156 SSLLDLCIFNCPNLTSLPK----VGLPSSLLELTIFDCPK 191 (227)
Q Consensus 156 ~~L~~l~i~~c~~l~~~~~----~~~~~~L~~L~l~~c~~ 191 (227)
+.|++|.+-+++.-..-.. ...+|+|+.||+.+...
T Consensus 113 p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 113 PKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred CccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 6777777776553222111 12378889998887653
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.00015 Score=63.81 Aligned_cols=102 Identities=18% Similarity=0.186 Sum_probs=66.5
Q ss_pred CCCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 2 RLPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 2 ~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
++++.|+.|+++.+. ++++. .+..+++|++|+++++ .+..+|.. ..-..|..|.+ ++ +.++ .-.++.++.+
T Consensus 184 qll~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~l-rn-N~l~---tL~gie~Lks 255 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNL-RN-NALT---TLRGIENLKS 255 (1096)
T ss_pred HHHHHhhhhccchhh-hhhhH-HHHhcccccccccccc-hhccccccchhhhhheeeee-cc-cHHH---hhhhHHhhhh
Confidence 467888999999854 44444 5678888999999874 57777655 22234888888 65 5554 2336788888
Q ss_pred cceEEeccCCCCCc---cCccCcCCCCCCccceEEEecC
Q 045261 81 LRWLLIERCDESEC---FPDGMMGMTLPTSLVHLNIVEF 116 (227)
Q Consensus 81 L~~L~l~~~~~l~~---l~~~~~~~~~~~~L~~L~l~~~ 116 (227)
|+.|+++++ .+.. +..-| .+..|..|.+.++
T Consensus 256 L~~LDlsyN-ll~~hseL~pLw----sLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 256 LYGLDLSYN-LLSEHSELEPLW----SLSSLIVLWLEGN 289 (1096)
T ss_pred hhccchhHh-hhhcchhhhHHH----HHHHHHHHhhcCC
Confidence 999998874 3322 22222 3456666666663
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.0031 Score=29.59 Aligned_cols=21 Identities=14% Similarity=0.420 Sum_probs=14.3
Q ss_pred CccEEEeccCCCCCcCCcccCC
Q 045261 6 SISSVEIRRCEKLGALPSDMHK 27 (227)
Q Consensus 6 ~L~~L~l~~~~~l~~lp~~~~~ 27 (227)
+|++|++++| .++.+|.++++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 5778888887 56677765544
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.00055 Score=51.22 Aligned_cols=63 Identities=22% Similarity=0.354 Sum_probs=31.8
Q ss_pred CCCCCcceEeecCCCCCcccCCC---CCCCCcceeEeccCcccccccchhcccccCCccceEEeccCC
Q 045261 26 HKLNSLQDLDIRECPSIVSFPEE---GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCD 90 (227)
Q Consensus 26 ~~l~~L~~L~l~~c~~l~~~~~~---~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~ 90 (227)
.+++.++.|.+.+|..+.+..-. +..++|+.|+| ++|..+++.-.. .+..+++|+.|.+.+.+
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~l-sgC~rIT~~GL~-~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDL-SGCPRITDGGLA-CLLKLKNLRRLHLYDLP 187 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeec-cCCCeechhHHH-HHHHhhhhHHHHhcCch
Confidence 44555555556555554433221 34456666666 666666533222 24455555555555543
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.022 Score=42.88 Aligned_cols=107 Identities=14% Similarity=0.098 Sum_probs=58.2
Q ss_pred CcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCccc
Q 045261 30 SLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLV 109 (227)
Q Consensus 30 ~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~ 109 (227)
....+++++. .+..++....++.|.+|.+ +.+.++ .+.+....-+++|+.|.+.++ .+.++.+-- .+..+|+|+
T Consensus 43 ~~d~iDLtdN-dl~~l~~lp~l~rL~tLll--~nNrIt-~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~-pLa~~p~L~ 116 (233)
T KOG1644|consen 43 QFDAIDLTDN-DLRKLDNLPHLPRLHTLLL--NNNRIT-RIDPDLDTFLPNLKTLILTNN-SIQELGDLD-PLASCPKLE 116 (233)
T ss_pred ccceeccccc-chhhcccCCCccccceEEe--cCCcce-eeccchhhhccccceEEecCc-chhhhhhcc-hhccCCccc
Confidence 3445666653 3555555556677777777 335665 444433344667777777765 444443211 112567777
Q ss_pred eEEEecCCCccccCC-CCCCccCCCCccEEeecCC
Q 045261 110 HLNIVEFQKLKNLSS-SSSGFHSLTSLRRLLIQDC 143 (227)
Q Consensus 110 ~L~l~~~~~l~~l~~-~~~~l~~l~~L~~L~l~~c 143 (227)
+|.+-+++ +..-.. -...+-.+|+|+.|++...
T Consensus 117 ~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 117 YLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 77776632 222110 0022335678888877763
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.00035 Score=49.24 Aligned_cols=60 Identities=13% Similarity=0.210 Sum_probs=35.9
Q ss_pred ccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecC
Q 045261 76 HRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQD 142 (227)
Q Consensus 76 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~ 142 (227)
.....|+..+++++ .++++|..+. ..++..+.|.+.+ +.+.++| .++..++.|+.+++..
T Consensus 50 ~~~~el~~i~ls~N-~fk~fp~kft--~kf~t~t~lNl~~-neisdvP---eE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 50 SKGYELTKISLSDN-GFKKFPKKFT--IKFPTATTLNLAN-NEISDVP---EELAAMPALRSLNLRF 109 (177)
T ss_pred hCCceEEEEecccc-hhhhCCHHHh--hccchhhhhhcch-hhhhhch---HHHhhhHHhhhccccc
Confidence 33444555566664 5666665553 2455666666665 5666666 5566666666666666
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.11 Score=35.94 Aligned_cols=104 Identities=17% Similarity=0.249 Sum_probs=43.2
Q ss_pred ccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcC
Q 045261 24 DMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMG 101 (227)
Q Consensus 24 ~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 101 (227)
.+.++++|+.+.+.. .+..++.. ..+++|+.+.+ .+ .+. .+....+..+++|+.+.+.. .+..++....
T Consensus 7 ~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~-~~--~~~-~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F- 77 (129)
T PF13306_consen 7 AFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINF-PN--NLT-SIGDNAFSNCKSLESITFPN--NLKSIGDNAF- 77 (129)
T ss_dssp TTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEE-SS--TTS-CE-TTTTTT-TT-EEEEETS--TT-EE-TTTT-
T ss_pred HHhCCCCCCEEEECC--CeeEeChhhcccccccccccc-cc--ccc-ccceeeeecccccccccccc--cccccccccc-
Confidence 345566666666653 35555544 45556666666 43 132 33344556665666666653 3444443332
Q ss_pred CCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecC
Q 045261 102 MTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQD 142 (227)
Q Consensus 102 ~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~ 142 (227)
..+++|+.+++.. .+..++ ...+.+. +|+.+.+..
T Consensus 78 -~~~~~l~~i~~~~--~~~~i~--~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 78 -SNCTNLKNIDIPS--NITEIG--SSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TT-TTECEEEETT--T-BEEH--TTTTTT--T--EEE-TT
T ss_pred -cccccccccccCc--cccEEc--hhhhcCC-CceEEEECC
Confidence 1355666666643 344444 3445554 666665543
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.0027 Score=51.41 Aligned_cols=177 Identities=12% Similarity=0.084 Sum_probs=102.3
Q ss_pred CCCccEEEeccCCCCCcCCc----ccCCCCCcceEeecCCCCCcccC---------------CCCCCCCcceeEeccCcc
Q 045261 4 PESISSVEIRRCEKLGALPS----DMHKLNSLQDLDIRECPSIVSFP---------------EEGFPTNLTSLAIGEDMK 64 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~----~~~~l~~L~~L~l~~c~~l~~~~---------------~~~~l~~L~~L~l~~~~~ 64 (227)
+|.|+.|+||++-.-..-+. -+.++..|++|.+.+|. +.... ...+.++|+++.. .. +
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~-~r-N 167 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFIC-GR-N 167 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEe-ec-c
Confidence 35788888888643333222 33567888888888885 22111 1146678888877 33 4
Q ss_pred ccccc---chhcccccCCccceEEeccCCCCC-----ccCccCcCCCCCCccceEEEecCCCccc----cCCCCCCccCC
Q 045261 65 MLYKG---LVQWGLHRLTSLRWLLIERCDESE-----CFPDGMMGMTLPTSLVHLNIVEFQKLKN----LSSSSSGFHSL 132 (227)
Q Consensus 65 ~l~~~---~~~~~~~~l~~L~~L~l~~~~~l~-----~l~~~~~~~~~~~~L~~L~l~~~~~l~~----l~~~~~~l~~l 132 (227)
.+.+. .+...++..+.|+.+.+..+ .+. .+-..+ ..++.|+.||+.++..-.. +. ..+..+
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal---~~~~~LevLdl~DNtft~egs~~La---kaL~s~ 240 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEAL---EHCPHLEVLDLRDNTFTLEGSVALA---KALSSW 240 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHH---HhCCcceeeecccchhhhHHHHHHH---HHhccc
Confidence 44311 12234566778888887764 222 112222 2678899999988433211 22 345567
Q ss_pred CCccEEeecCCCCCccCCC-------CCCCCccceeeecCCCCCCCCC-----CCCCCCCCcEEeecCCch
Q 045261 133 TSLRRLLIQDCPNLTSLPK-------VGLPSSLLDLCIFNCPNLTSLP-----KVGLPSSLLELTIFDCPK 191 (227)
Q Consensus 133 ~~L~~L~l~~c~~l~~~~~-------~~~~~~L~~l~i~~c~~l~~~~-----~~~~~~~L~~L~l~~c~~ 191 (227)
++|+.|++++|. ++.-.. ....++|+.+.+.+|..-.+-. ...-.+.|++|++.+|..
T Consensus 241 ~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 241 PHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred chheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 888999998885 332111 1236788888887765322210 011257788888888753
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.0013 Score=46.40 Aligned_cols=112 Identities=15% Similarity=0.126 Sum_probs=74.4
Q ss_pred cceEeecCCCCCcccCCC----CCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCC
Q 045261 31 LQDLDIRECPSIVSFPEE----GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPT 106 (227)
Q Consensus 31 L~~L~l~~c~~l~~~~~~----~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 106 (227)
+..+++++|. +-+++.. .....|+..++ ++ +.+. .+++.....++.++.|++.++ .+.++|.++. .++
T Consensus 29 ~h~ldLssc~-lm~i~davy~l~~~~el~~i~l-s~-N~fk-~fp~kft~kf~t~t~lNl~~n-eisdvPeE~A---am~ 100 (177)
T KOG4579|consen 29 LHFLDLSSCQ-LMYIADAVYMLSKGYELTKISL-SD-NGFK-KFPKKFTIKFPTATTLNLANN-EISDVPEELA---AMP 100 (177)
T ss_pred hhhcccccch-hhHHHHHHHHHhCCceEEEEec-cc-chhh-hCCHHHhhccchhhhhhcchh-hhhhchHHHh---hhH
Confidence 4456777775 3333322 34466777788 66 5555 444544456677889999986 8889999876 789
Q ss_pred ccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCC
Q 045261 107 SLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLP 155 (227)
Q Consensus 107 ~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~ 155 (227)
.|+.|.++. +.+...| ..+..+.++..|+.-+ +.+..++...+.
T Consensus 101 aLr~lNl~~-N~l~~~p---~vi~~L~~l~~Lds~~-na~~eid~dl~~ 144 (177)
T KOG4579|consen 101 ALRSLNLRF-NPLNAEP---RVIAPLIKLDMLDSPE-NARAEIDVDLFY 144 (177)
T ss_pred Hhhhccccc-Cccccch---HHHHHHHhHHHhcCCC-CccccCcHHHhc
Confidence 999999988 5666666 5555567777777666 556666654333
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.074 Score=36.83 Aligned_cols=116 Identities=14% Similarity=0.226 Sum_probs=59.0
Q ss_pred CCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 4 PESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
+++|+.+.+.. .+..++ ..+.++++|+.+.+.. .+..++.. ..+++++.+.+ .+ .+. .+....+..+++
T Consensus 11 ~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~-~~--~~~-~i~~~~F~~~~~ 82 (129)
T PF13306_consen 11 CSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITF-PN--NLK-SIGDNAFSNCTN 82 (129)
T ss_dssp -TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEE-TS--TT--EE-TTTTTT-TT
T ss_pred CCCCCEEEECC--CeeEeChhhcccccccccccccc--cccccceeeeecccccccccc-cc--ccc-cccccccccccc
Confidence 35788888875 355555 4578888999999976 37777665 66778999999 54 332 334556788999
Q ss_pred cceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCcc
Q 045261 81 LRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLR 136 (227)
Q Consensus 81 L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~ 136 (227)
|+.+.+.. .+..++.... ... +|+.+.+.+ .+..++ ...+.++++|+
T Consensus 83 l~~i~~~~--~~~~i~~~~f--~~~-~l~~i~~~~--~~~~i~--~~~F~~~~~l~ 129 (129)
T PF13306_consen 83 LKNIDIPS--NITEIGSSSF--SNC-NLKEINIPS--NITKIE--ENAFKNCTKLK 129 (129)
T ss_dssp ECEEEETT--T-BEEHTTTT--TT--T--EEE-TT--B-SS------GGG------
T ss_pred ccccccCc--cccEEchhhh--cCC-CceEEEECC--CccEEC--CccccccccCC
Confidence 99999875 3666665443 134 777777653 555555 45566655553
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.011 Score=46.06 Aligned_cols=87 Identities=20% Similarity=0.189 Sum_probs=43.7
Q ss_pred CCCCcceeEeccCcccccccchhcccccCCccceEEeccCCC--CCccCccCcCCCCCCccceEEEecCCCccccCCCCC
Q 045261 50 FPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDE--SECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSS 127 (227)
Q Consensus 50 ~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~--l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~ 127 (227)
.+..|+.+.+ .++...+ ...+-.+++|++|.++.++. ...++.-.. .+|+|+++.+++ +.+..+. +..
T Consensus 41 ~~~~le~ls~-~n~gltt----~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e---~~P~l~~l~ls~-Nki~~ls-tl~ 110 (260)
T KOG2739|consen 41 EFVELELLSV-INVGLTT----LTNFPKLPKLKKLELSDNYRRVSGGLEVLAE---KAPNLKVLNLSG-NKIKDLS-TLR 110 (260)
T ss_pred cccchhhhhh-hccceee----cccCCCcchhhhhcccCCcccccccceehhh---hCCceeEEeecC-Ccccccc-ccc
Confidence 4455555555 5544332 11344566677777765522 222222221 346777777766 4444321 123
Q ss_pred CccCCCCccEEeecCCCCC
Q 045261 128 GFHSLTSLRRLLIQDCPNL 146 (227)
Q Consensus 128 ~l~~l~~L~~L~l~~c~~l 146 (227)
.+..+.+|..|++.+|.-.
T Consensus 111 pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVT 129 (260)
T ss_pred hhhhhcchhhhhcccCCcc
Confidence 4455566666666666543
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.0015 Score=48.88 Aligned_cols=90 Identities=21% Similarity=0.316 Sum_probs=54.0
Q ss_pred CcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCC
Q 045261 53 NLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSL 132 (227)
Q Consensus 53 ~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l 132 (227)
.++.++- +++.... . -..-+..+++++.|.+.+|..+.+.-.+..+. ..++|+.|++++|..+++-. ..++..+
T Consensus 102 ~IeaVDA-sds~I~~-e-Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~G--L~~L~~l 175 (221)
T KOG3864|consen 102 KIEAVDA-SDSSIMY-E-GLEHLRDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDGG--LACLLKL 175 (221)
T ss_pred eEEEEec-CCchHHH-H-HHHHHhccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechhH--HHHHHHh
Confidence 4455555 5543332 1 11124556677777777776665543222111 46788888888888887754 4666777
Q ss_pred CCccEEeecCCCCCcc
Q 045261 133 TSLRRLLIQDCPNLTS 148 (227)
Q Consensus 133 ~~L~~L~l~~c~~l~~ 148 (227)
++|+.|.+.+.+.+..
T Consensus 176 knLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 176 KNLRRLHLYDLPYVAN 191 (221)
T ss_pred hhhHHHHhcCchhhhc
Confidence 8888888877554433
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.017 Score=46.15 Aligned_cols=83 Identities=12% Similarity=0.062 Sum_probs=43.4
Q ss_pred CCCccEEEeccCCCCCcCCc---ccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 4 PESISSVEIRRCEKLGALPS---DMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~---~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
++.++.+++.++ .+..+.+ .+.++|.|+.|+++..+.-..+... .-..+|+.|.+ -+ ..+.-......+..+|
T Consensus 70 ~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVL-Ng-T~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 70 VTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVL-NG-TGLSWTQSTSSLDDLP 146 (418)
T ss_pred hhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEE-cC-CCCChhhhhhhhhcch
Confidence 345667777774 3444332 3467888888888654322222222 23467777777 33 2222111222345566
Q ss_pred ccceEEeccC
Q 045261 80 SLRWLLIERC 89 (227)
Q Consensus 80 ~L~~L~l~~~ 89 (227)
.++.|.++.+
T Consensus 147 ~vtelHmS~N 156 (418)
T KOG2982|consen 147 KVTELHMSDN 156 (418)
T ss_pred hhhhhhhccc
Confidence 6666665543
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.00066 Score=53.41 Aligned_cols=61 Identities=20% Similarity=0.207 Sum_probs=27.6
Q ss_pred CCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccC
Q 045261 78 LTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSL 149 (227)
Q Consensus 78 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~ 149 (227)
+.+.++|+.++| .+.++..-. .++.|+.|.++- +.+..+ ..+.++++|++|++.. +.|.++
T Consensus 18 l~~vkKLNcwg~-~L~DIsic~----kMp~lEVLsLSv-NkIssL----~pl~rCtrLkElYLRk-N~I~sl 78 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISICE----KMPLLEVLSLSV-NKISSL----APLQRCTRLKELYLRK-NCIESL 78 (388)
T ss_pred HHHhhhhcccCC-CccHHHHHH----hcccceeEEeec-cccccc----hhHHHHHHHHHHHHHh-cccccH
Confidence 334455555554 444443322 345555555543 444443 2344555555555544 334443
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.024 Score=24.68 Aligned_cols=16 Identities=13% Similarity=0.387 Sum_probs=7.4
Q ss_pred CCccEEEeccCCCCCcC
Q 045261 5 ESISSVEIRRCEKLGAL 21 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~l 21 (227)
++|+.|++++|. ++++
T Consensus 1 ~~L~~L~l~~n~-L~~l 16 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSL 16 (17)
T ss_dssp TT-SEEEETSS---SSE
T ss_pred CccCEEECCCCC-CCCC
Confidence 356666666654 4443
|
... |
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.044 Score=42.78 Aligned_cols=113 Identities=16% Similarity=0.144 Sum_probs=65.7
Q ss_pred CCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcc--cccccchhcccccCCccceEEeccCCCCCccCccCcCCC
Q 045261 26 HKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMK--MLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMT 103 (227)
Q Consensus 26 ~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~--~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 103 (227)
-.+..|+.+++.++. +..+.....+++|+.|.+ ++ + ...... +-.+..+++|++++++++ .+..+ .......
T Consensus 40 d~~~~le~ls~~n~g-ltt~~~~P~Lp~LkkL~l-sd-n~~~~~~~l-~vl~e~~P~l~~l~ls~N-ki~~l-stl~pl~ 113 (260)
T KOG2739|consen 40 DEFVELELLSVINVG-LTTLTNFPKLPKLKKLEL-SD-NYRRVSGGL-EVLAEKAPNLKVLNLSGN-KIKDL-STLRPLK 113 (260)
T ss_pred ccccchhhhhhhccc-eeecccCCCcchhhhhcc-cC-Ccccccccc-eehhhhCCceeEEeecCC-ccccc-cccchhh
Confidence 455667777777764 444444457889999998 55 4 332222 223455699999999986 44432 1111112
Q ss_pred CCCccceEEEecCCCccccC-CCCCCccCCCCccEEeecCCCC
Q 045261 104 LPTSLVHLNIVEFQKLKNLS-SSSSGFHSLTSLRRLLIQDCPN 145 (227)
Q Consensus 104 ~~~~L~~L~l~~~~~l~~l~-~~~~~l~~l~~L~~L~l~~c~~ 145 (227)
.+.+|.+|++.+|.-.. +. --..-+.-+++|+.|+-..+..
T Consensus 114 ~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred hhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCC
Confidence 46678888888875433 21 0002233567888887766543
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.0028 Score=50.01 Aligned_cols=104 Identities=18% Similarity=0.144 Sum_probs=61.2
Q ss_pred CCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCc
Q 045261 28 LNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTS 107 (227)
Q Consensus 28 l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 107 (227)
+.+.+.|+.++|. +.++..-..++.|+.|.+ + .++++ .+ ..+..|++|++|.++.+ .+.++.+-. -+.++|+
T Consensus 18 l~~vkKLNcwg~~-L~DIsic~kMp~lEVLsL-S-vNkIs-sL--~pl~rCtrLkElYLRkN-~I~sldEL~-YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISICEKMPLLEVLSL-S-VNKIS-SL--APLQRCTRLKELYLRKN-CIESLDELE-YLKNLPS 89 (388)
T ss_pred HHHhhhhcccCCC-ccHHHHHHhcccceeEEe-e-ccccc-cc--hhHHHHHHHHHHHHHhc-ccccHHHHH-HHhcCch
Confidence 4456677777774 666665567788888887 3 35554 22 24677888888887765 454443211 0125778
Q ss_pred cceEEEecCCCccccCC--CCCCccCCCCccEEe
Q 045261 108 LVHLNIVEFQKLKNLSS--SSSGFHSLTSLRRLL 139 (227)
Q Consensus 108 L~~L~l~~~~~l~~l~~--~~~~l~~l~~L~~L~ 139 (227)
|+.|.+..++.....+. -...+.-+|+|++|+
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88888877655544330 001123456666665
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.068 Score=42.86 Aligned_cols=82 Identities=18% Similarity=0.224 Sum_probs=49.6
Q ss_pred CCCCCcceEeecCCCCCcccCCC----CCCCCcceeEeccCcccccccchhccc-ccCCccceEEeccCCCCC-ccCccC
Q 045261 26 HKLNSLQDLDIRECPSIVSFPEE----GFPTNLTSLAIGEDMKMLYKGLVQWGL-HRLTSLRWLLIERCDESE-CFPDGM 99 (227)
Q Consensus 26 ~~l~~L~~L~l~~c~~l~~~~~~----~~l~~L~~L~l~~~~~~l~~~~~~~~~-~~l~~L~~L~l~~~~~l~-~l~~~~ 99 (227)
...+.++.+++.+. .+.++... ..++.|++|++ +|+.+...+- .. ....+|+.|.+.+...-. ......
T Consensus 68 ~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNl--s~N~L~s~I~--~lp~p~~nl~~lVLNgT~L~w~~~~s~l 142 (418)
T KOG2982|consen 68 SSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNL--SCNSLSSDIK--SLPLPLKNLRVLVLNGTGLSWTQSTSSL 142 (418)
T ss_pred HHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeec--cCCcCCCccc--cCcccccceEEEEEcCCCCChhhhhhhh
Confidence 35677888888875 35544332 67899999998 7788863221 12 355688888887742211 111111
Q ss_pred cCCCCCCccceEEEec
Q 045261 100 MGMTLPTSLVHLNIVE 115 (227)
Q Consensus 100 ~~~~~~~~L~~L~l~~ 115 (227)
..+|.+++|+++.
T Consensus 143 ---~~lP~vtelHmS~ 155 (418)
T KOG2982|consen 143 ---DDLPKVTELHMSD 155 (418)
T ss_pred ---hcchhhhhhhhcc
Confidence 1466777777776
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=90.64 E-value=0.16 Score=24.62 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=14.4
Q ss_pred CCCCcEEeecCCchhhhh
Q 045261 178 PSSLLELTIFDCPKLRKE 195 (227)
Q Consensus 178 ~~~L~~L~l~~c~~l~~~ 195 (227)
+++|+.|++++|++++..
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 468889999999888754
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.66 E-value=0.66 Score=36.98 Aligned_cols=135 Identities=16% Similarity=0.169 Sum_probs=78.1
Q ss_pred CCCccEEEeccCCCCCcCCc----ccCCCCCcceEeecCCCCCcccCCC---------------CCCCCcceeEeccCcc
Q 045261 4 PESISSVEIRRCEKLGALPS----DMHKLNSLQDLDIRECPSIVSFPEE---------------GFPTNLTSLAIGEDMK 64 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~----~~~~l~~L~~L~l~~c~~l~~~~~~---------------~~l~~L~~L~l~~~~~ 64 (227)
||.|+..++|++-.-...|+ .+.+-+.|.+|.+++|. +..+... ..-+.|+.+.. +-+
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vic--grN 167 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC--GRN 167 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEe--ccc
Confidence 68899999999765555554 33566789999998874 4333211 24467777776 334
Q ss_pred ccccc---chhcccccCCccceEEeccCCCCCccCccC-----cCCCCCCccceEEEecCCCccccCC-CCCCccCCCCc
Q 045261 65 MLYKG---LVQWGLHRLTSLRWLLIERCDESECFPDGM-----MGMTLPTSLVHLNIVEFQKLKNLSS-SSSGFHSLTSL 135 (227)
Q Consensus 65 ~l~~~---~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~-----~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~l~~L 135 (227)
.+... .+...+....+|+.+.+..+ .+.. .+. .+...+.+|+.||++++.....-+. -...+..++.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qN-gIrp--egv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQN-GIRP--EGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeec-CcCc--chhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 44311 11223455578888888875 3332 111 0112567899999998433211100 00223355678
Q ss_pred cEEeecCCC
Q 045261 136 RRLLIQDCP 144 (227)
Q Consensus 136 ~~L~l~~c~ 144 (227)
+.|.+.+|-
T Consensus 245 rEL~lnDCl 253 (388)
T COG5238 245 RELRLNDCL 253 (388)
T ss_pred hhccccchh
Confidence 889888874
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.53 E-value=0.2 Score=40.88 Aligned_cols=111 Identities=17% Similarity=0.140 Sum_probs=69.3
Q ss_pred CCCCccEEEeccCCCCC----cCCcccCCCCCcceEeecCCCCCcc----cCCC-CCCCCcceeEeccCcccccccch--
Q 045261 3 LPESISSVEIRRCEKLG----ALPSDMHKLNSLQDLDIRECPSIVS----FPEE-GFPTNLTSLAIGEDMKMLYKGLV-- 71 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~----~lp~~~~~l~~L~~L~l~~c~~l~~----~~~~-~~l~~L~~L~l~~~~~~l~~~~~-- 71 (227)
..+.|+.+.++.+..-. .+-..+..+++|+.|++.++..-.. +... ..+++|++|++ .+|.--.....
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l-~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL-GDCLLENEGAIAF 261 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc-cccccccccHHHH
Confidence 45788888888854322 1224568899999999998653221 2222 56778999999 88865542211
Q ss_pred -hcccccCCccceEEeccCCCCCc-----cCccCcCCCCCCccceEEEecCCC
Q 045261 72 -QWGLHRLTSLRWLLIERCDESEC-----FPDGMMGMTLPTSLVHLNIVEFQK 118 (227)
Q Consensus 72 -~~~~~~l~~L~~L~l~~~~~l~~-----l~~~~~~~~~~~~L~~L~l~~~~~ 118 (227)
.-.-...++|+.+.+.+| .++. +...+. ..|.|..|.+.+|..
T Consensus 262 ~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~---ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGN-EITRDAALALAACMA---EKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHh---cchhhHHhcCCcccc
Confidence 111134788999999987 4332 111121 368899999988543
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=81.48 E-value=1.3 Score=21.13 Aligned_cols=20 Identities=40% Similarity=0.575 Sum_probs=12.8
Q ss_pred CCCccEEeecCCCCCccCCCC
Q 045261 132 LTSLRRLLIQDCPNLTSLPKV 152 (227)
Q Consensus 132 l~~L~~L~l~~c~~l~~~~~~ 152 (227)
+++|++|++++ +.++.+|..
T Consensus 1 L~~L~~L~L~~-N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSN-NQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCC-CcCCcCCHH
Confidence 35677777777 466666653
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=81.48 E-value=1.3 Score=21.13 Aligned_cols=20 Identities=40% Similarity=0.575 Sum_probs=12.8
Q ss_pred CCCccEEeecCCCCCccCCCC
Q 045261 132 LTSLRRLLIQDCPNLTSLPKV 152 (227)
Q Consensus 132 l~~L~~L~l~~c~~l~~~~~~ 152 (227)
+++|++|++++ +.++.+|..
T Consensus 1 L~~L~~L~L~~-N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSN-NQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCC-CcCCcCCHH
Confidence 35677777777 466666653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 9e-12
Identities = 46/206 (22%), Positives = 83/206 (40%), Gaps = 28/206 (13%)
Query: 1 RRLPESISSVE------IRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE------ 48
LP+++ + R L ALP+ + LN L++L IR CP + PE
Sbjct: 117 MELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTDA 175
Query: 49 -GFPTNLTSLAIGEDMKMLYKGLVQW--GLHRLTSLRWLLIERCDESECFPDGMMGMTLP 105
G L +L + +++ + G+ + L +L+ L I + +
Sbjct: 176 SGEHQGLVNL---QSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHL--- 228
Query: 106 TSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPK-VGLPSSLLDLCIF 164
L L++ L+N F L+RL+++DC NL +LP + + L L +
Sbjct: 229 PKLEELDLRGCTALRNYPPI---FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285
Query: 165 NCPNLTSLPK-VGLPSSLLELTIFDC 189
C NL+ LP + + + +
Sbjct: 286 GCVNLSRLPSLIAQLPANCIILVPPH 311
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 6e-11
Identities = 40/187 (21%), Positives = 67/187 (35%), Gaps = 18/187 (9%)
Query: 17 KLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKM------LYKG 69
L LP M + L+ L + + + P L L+I ++ L
Sbjct: 115 GLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLAST 173
Query: 70 LVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGF 129
L +L+ L +E P + + +L L I L L +
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIRS-LPASIANL---QNLKSLKIRNSP-LSALGPA---I 225
Query: 130 HSLTSLRRLLIQDCPNLTSLPK-VGLPSSLLDLCIFNCPNLTSLPK-VGLPSSLLELTIF 187
H L L L ++ C L + P G + L L + +C NL +LP + + L +L +
Sbjct: 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285
Query: 188 DCPKLRK 194
C L +
Sbjct: 286 GCVNLSR 292
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 4e-07
Identities = 27/179 (15%), Positives = 56/179 (31%), Gaps = 16/179 (8%)
Query: 18 LGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHR 77
+G+ H + ++L + ++ + + +
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGSTALRPYHDV--LSQWQRH-----YNADRNRWHSAWRQA 53
Query: 78 LTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRR 137
++ + + D + T P V L + L L+ L+
Sbjct: 54 NSNNPQIETRTGRALKATADLLEDATQP-GRVALEL-RSVPLPQFPDQ---AFRLSHLQH 108
Query: 138 LLIQDCPNLTSLPK-VGLPSSLLDLCIFNCPNLTSLPK-VGLPSSLLELTIFDCPKLRK 194
+ I L LP + + L L + L +LP + + L EL+I CP+L +
Sbjct: 109 MTIDAA-GLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTE 165
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 6e-05
Identities = 32/164 (19%), Positives = 56/164 (34%), Gaps = 41/164 (25%)
Query: 1 RRLPESISSV------EIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNL 54
R LP SI+++ +IR L AL +H L L++LD+R C ++ ++P
Sbjct: 196 RSLPASIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPPI------ 248
Query: 55 TSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIV 114
G L+ L+++ C P + + T L L++
Sbjct: 249 ----FGG----------------RAPLKRLILKDCSNLLTLPLDIHRL---TQLEKLDLR 285
Query: 115 EFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSL 158
L L S L + +L+ P +
Sbjct: 286 GCVNLSRLPSL---IAQLPANCIILVPPHLQAQLDQH--RPVAR 324
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-07
Identities = 42/190 (22%), Positives = 71/190 (37%), Gaps = 33/190 (17%)
Query: 17 KLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLY------KGL 70
+ + S+ L L+ LD + + E +L +L L +
Sbjct: 89 GVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNL------IYLDISHTHTRVA 141
Query: 71 VQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFH 130
+ L+SL L + E F + +L L++ +L+ LS ++ F+
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL--RNLTFLDL-SQCQLEQLSPTA--FN 196
Query: 131 SLTSLRRLLIQDCPNLTSLPK---VGLPS-SLLDLCIFNCPNLTSLPK---VGLPSSLLE 183
SL+SL+ L + N SL L S +LD N ++ + K PSSL
Sbjct: 197 SLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYS-LN--HIMTSKKQELQHFPSSLAF 252
Query: 184 LTI----FDC 189
L + F C
Sbjct: 253 LNLTQNDFAC 262
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 7e-06
Identities = 25/226 (11%), Positives = 48/226 (21%), Gaps = 65/226 (28%)
Query: 17 KLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLH 76
++ + + +L LQ + + S +
Sbjct: 436 RITFISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYA------KQYENEELSWS 488
Query: 77 RLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNI-------------------VEFQ 117
L L + + C PD + + L LNI +
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDLP---ELQSLNIACNRGISAAQLKADWTRLADDED 545
Query: 118 KLKNLSS------------SSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSL--LDLC- 162
+ +S+ + L L + L G L L L
Sbjct: 546 TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLEAFGTNVKLTDLKLDY 604
Query: 163 ---------IFNCPN-----------LTSLPKVGLPSSLLELTIFD 188
+ L +P + S+ + D
Sbjct: 605 NQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVD 650
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 5e-04
Identities = 26/179 (14%), Positives = 51/179 (28%), Gaps = 10/179 (5%)
Query: 18 LGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHR 77
G +P + +L L+ L S LT E + + L
Sbjct: 336 KGRVPDAIGQLTELKVLSFGTH-SETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDY 394
Query: 78 LTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKN-LSSSSSGFHSLTSLR 136
L + + + P+ M S + L + L N ++ S LT L+
Sbjct: 395 DQRLNLSDLLQDAINR-NPE--MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQ 451
Query: 137 RLLIQDCPNLTSLPKVGLPSSLLDLCIFNCPNLTSLPKV-GLPSSLLELTIFDCPKLRK 194
+ + T D + L ++ +++CP + +
Sbjct: 452 IIYFANS-PFTYDNI---AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ 506
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 7e-04
Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 20/168 (11%)
Query: 30 SLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERC 89
L I P + ++ +L IG + + + RLT L+ +
Sbjct: 402 DLLQDAINRNPEMKPIKKDSR-ISLKDTQIGNLTNRI--TFISKAIQRLTKLQIIYFANS 458
Query: 90 DESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSL 149
T V K + + +L L + + +CPN+T L
Sbjct: 459 P-----------FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL 507
Query: 150 PKV--GLPS-SLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCPKLRK 194
P LP L++ N S ++ + L PK++
Sbjct: 508 PDFLYDLPELQSLNIA-CN--RGISAAQLKADWTRLADDEDTGPKIQI 552
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 13/168 (7%)
Query: 23 SDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLR 82
+ +H + S+ D+ + +V+ P+ NL L L + + L R+ L+
Sbjct: 375 TTIHFIPSIPDIFLSGNK-LVTLPKINLTANLIHL----SENRLENLDILYFLLRVPHLQ 429
Query: 83 WLLIERCDESECFPDGMMGMTLPTSLVHLNI--VEFQKLKNLSSSSSGFHSLTSLRRLLI 140
L++ + S C D SL L + Q F L+ L+ L +
Sbjct: 430 ILILNQNRFSSCSGDQTPSE--NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487
Query: 141 QDCPNLTSLPKVGLP--SSLLDLCIFNCPNLTSLPKVGLPSSLLELTI 186
L SLP ++L L + + LT L LP++L L I
Sbjct: 488 NHN-YLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLPANLEILDI 533
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-05
Identities = 38/206 (18%), Positives = 67/206 (32%), Gaps = 38/206 (18%)
Query: 17 KLGALPSDM-HKLNSLQDLDIRECPSIVSFPEEGFP--TNLTSLAIGE--DMKMLYKGLV 71
L +PS L ++ + + ++ F + +T + I ++ +
Sbjct: 42 HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA- 100
Query: 72 QWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVE-----------FQKLK 120
L L L++L I FPD + L I + FQ L
Sbjct: 101 ---LKELPLLKFLGIFNTGLKM-FPDLTKVYSTD-IFFILEITDNPYMTSIPVNAFQGLC 155
Query: 121 NLSSS-----------SSGFHSLTSLRRLLIQDCPNLTSLPK---VGLPSSLLDLCIFNC 166
N + + + T L + + LT + K G+ S L +
Sbjct: 156 NETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215
Query: 167 PNLTSLPKVGLPSSLLELTIFDCPKL 192
++T+LP GL L EL + L
Sbjct: 216 -SVTALPSKGL-EHLKELIARNTWTL 239
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 4e-05
Identities = 30/192 (15%), Positives = 59/192 (30%), Gaps = 42/192 (21%)
Query: 6 SISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKM 65
++ VE+ C L LP+ + L +Q +++ I + L +GE +++
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309
Query: 66 LY-------KGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQK 118
+Y V+ L ++ L L
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYN----------------------------- 340
Query: 119 LKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPK--VGLPSSLLDLCIFNCPNLTSLPKVG 176
L F S L L + +T +P G + +L + L +P +
Sbjct: 341 --QLEGKLPAFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHN-KLKYIPNIF 396
Query: 177 LPSSLLELTIFD 188
S+ ++ D
Sbjct: 397 DAKSVSVMSAID 408
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 8e-05
Identities = 19/162 (11%), Positives = 45/162 (27%), Gaps = 26/162 (16%)
Query: 17 KLGALPSDMHKLNSLQDLDIRECP-SIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGL 75
+ + + +L L+ + P + E N
Sbjct: 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY--------KTEDLKW 245
Query: 76 HRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLN-----IVEFQKLKNLSSSSSGFH 130
L L + + C P + + + +N + ++LK+ + +
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPTFLKAL---PEMQLINVACNRGISGEQLKDDWQALADAP 302
Query: 131 SLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIFNCPNLTSL 172
++ + I NL + P + +S + L L
Sbjct: 303 VGEKIQIIYIGYN-NLKTFP---VETS-----LQKMKKLGML 335
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 227 | |||
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.84 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.82 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.75 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.73 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.72 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.71 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.71 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.71 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.69 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.69 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.68 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.68 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.67 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.66 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.65 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.65 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.65 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.64 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.63 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.63 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.63 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.62 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.62 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.62 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.62 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.61 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.61 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.61 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.61 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.61 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.6 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.6 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.6 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.59 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.59 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.59 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.59 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.58 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.58 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.58 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.58 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.58 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.58 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.57 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.57 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.57 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.57 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.57 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.56 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.56 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.55 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.55 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.55 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.55 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.55 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.54 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.54 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.54 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.53 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.53 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.53 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.53 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.52 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.52 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.51 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.51 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.51 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.51 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.51 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.51 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.51 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.51 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.5 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.5 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.5 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.5 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.49 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.48 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.48 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.47 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.46 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.45 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.45 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.45 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.44 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.44 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.43 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.43 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.43 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.43 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.42 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.42 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.4 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.4 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.4 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.4 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.39 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.38 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.38 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.38 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.38 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.37 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.36 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.34 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.32 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.32 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.27 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.25 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.25 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.15 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.15 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.13 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.13 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.12 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.12 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.11 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.09 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.04 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.03 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.03 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.03 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.01 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.0 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 98.99 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.98 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 98.98 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 98.97 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 98.96 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.96 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.93 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 98.92 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 98.8 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.79 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.79 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.78 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 98.78 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.76 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.75 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.74 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.67 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.64 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.62 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.6 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.57 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.57 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.44 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.39 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.22 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 97.94 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 97.68 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.0 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 96.93 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 96.9 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 96.84 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 96.75 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 96.74 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 96.58 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 96.44 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 96.3 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 96.06 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 95.22 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 92.2 |
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.3e-20 Score=148.42 Aligned_cols=177 Identities=25% Similarity=0.387 Sum_probs=98.0
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhccc-------
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGL------- 75 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~------- 75 (227)
+++|++|++++|. +..+|..++++++|++|+++++. +..+|.. ..+++|++|++ ++|+... .++. .+
T Consensus 103 l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L-~~n~~~~-~~p~-~~~~~~~~~ 177 (328)
T 4fcg_A 103 LSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSI-RACPELT-ELPE-PLASTDASG 177 (328)
T ss_dssp GTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEE-EEETTCC-CCCS-CSEEEC-CC
T ss_pred CCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEEC-CCCCCcc-ccCh-hHhhccchh
Confidence 3455555555543 33555555555566666665543 3344443 45556666666 5544332 2221 12
Q ss_pred --ccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC-
Q 045261 76 --HRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV- 152 (227)
Q Consensus 76 --~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~- 152 (227)
+.+++|++|+++++ .++.+|..+. .+++|++|++++ +.+..+| ..+..+++|++|++++|+..+.+|..
T Consensus 178 ~~~~l~~L~~L~L~~n-~l~~lp~~l~---~l~~L~~L~L~~-N~l~~l~---~~l~~l~~L~~L~Ls~n~~~~~~p~~~ 249 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWT-GIRSLPASIA---NLQNLKSLKIRN-SPLSALG---PAIHHLPKLEELDLRGCTALRNYPPIF 249 (328)
T ss_dssp CEEESTTCCEEEEEEE-CCCCCCGGGG---GCTTCCEEEEES-SCCCCCC---GGGGGCTTCCEEECTTCTTCCBCCCCT
T ss_pred hhccCCCCCEEECcCC-CcCcchHhhc---CCCCCCEEEccC-CCCCcCc---hhhccCCCCCEEECcCCcchhhhHHHh
Confidence 23556666666655 4445555543 456666666666 3444555 45666666666666666666655543
Q ss_pred CCCCccceeeecCCCCCCCCCCC-CCCCCCcEEeecCCchhh
Q 045261 153 GLPSSLLDLCIFNCPNLTSLPKV-GLPSSLLELTIFDCPKLR 193 (227)
Q Consensus 153 ~~~~~L~~l~i~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l~ 193 (227)
..+++|++|++++|...+.+|.. ..+++|++|++++|+.+.
T Consensus 250 ~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 250 GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence 34556666666666666666642 345666777777666444
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.2e-19 Score=142.23 Aligned_cols=201 Identities=20% Similarity=0.317 Sum_probs=161.6
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccc
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLR 82 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~ 82 (227)
.++++.|+++++ .++.+|..+..+++|++|+++++. +..+|.. ..+++|++|++ +++ .+. .+ +..+..+++|+
T Consensus 80 ~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~L-s~n-~l~-~l-p~~l~~l~~L~ 153 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTL-ARN-PLR-AL-PASIASLNRLR 153 (328)
T ss_dssp STTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEE-ESC-CCC-CC-CGGGGGCTTCC
T ss_pred ccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEEC-CCC-ccc-cC-cHHHhcCcCCC
Confidence 478999999995 577999999999999999999975 6678876 78999999999 774 554 44 44689999999
Q ss_pred eEEeccCCCCCccCccCcC------CCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC-CCC
Q 045261 83 WLLIERCDESECFPDGMMG------MTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV-GLP 155 (227)
Q Consensus 83 ~L~l~~~~~l~~l~~~~~~------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~ 155 (227)
+|++++|.....+|..+.. ...+++|++|++++ +.+..+| ..+..+++|++|++++| .+..++.. ...
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~lp---~~l~~l~~L~~L~L~~N-~l~~l~~~l~~l 228 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW-TGIRSLP---ASIANLQNLKSLKIRNS-PLSALGPAIHHL 228 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEE-ECCCCCC---GGGGGCTTCCEEEEESS-CCCCCCGGGGGC
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcC-CCcCcch---HhhcCCCCCCEEEccCC-CCCcCchhhccC
Confidence 9999998888888886631 01288999999999 4777888 78999999999999994 57777654 457
Q ss_pred CccceeeecCCCCCCCCCCC-CCCCCCcEEeecCCchhhhhhcccCCCCcccccccceEEeccCCc
Q 045261 156 SSLLDLCIFNCPNLTSLPKV-GLPSSLLELTIFDCPKLRKECKRDKGKGWSKIANIPMFLIDDTDS 220 (227)
Q Consensus 156 ~~L~~l~i~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 220 (227)
++|++|++++|...+.+|.. +.+++|++|++++|..+.. ....+..+.++..+.+.++..
T Consensus 229 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~-----~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT-----LPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB-----CCTTGGGCTTCCEEECTTCTT
T ss_pred CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh-----cchhhhcCCCCCEEeCCCCCc
Confidence 89999999999999988864 5689999999999976542 233455666777777776543
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.75 E-value=8.1e-17 Score=124.60 Aligned_cols=197 Identities=17% Similarity=0.188 Sum_probs=152.9
Q ss_pred CCCCccEEEeccCCCCCcCCc-ccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 3 LPESISSVEIRRCEKLGALPS-DMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
+.++|+.|+++++ .++.+|. .+.++++|++|+++++..+..++.. ..+++|++|++ ++|+.++ .+.+..+..++
T Consensus 29 ~~~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l-~~~n~l~-~i~~~~f~~l~ 105 (239)
T 2xwt_C 29 LPPSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEI-RNTRNLT-YIDPDALKELP 105 (239)
T ss_dssp CCTTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEE-EEETTCC-EECTTSEECCT
T ss_pred CCCcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEEC-CCCCCee-EcCHHHhCCCC
Confidence 3568999999996 4666664 7889999999999998658888764 68899999999 8778887 55666788999
Q ss_pred ccceEEeccCCCCCccCccCcCCCCCCccc---eEEEecCCCccccCCCCCCccCCCCcc-EEeecCCCCCccCCCCC-C
Q 045261 80 SLRWLLIERCDESECFPDGMMGMTLPTSLV---HLNIVEFQKLKNLSSSSSGFHSLTSLR-RLLIQDCPNLTSLPKVG-L 154 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~---~L~l~~~~~l~~l~~~~~~l~~l~~L~-~L~l~~c~~l~~~~~~~-~ 154 (227)
+|++|+++++ .++.+|. +. .+++|+ +|+++++..+..++ ...+..+++|+ +|++++ +.+..+|... .
T Consensus 106 ~L~~L~l~~n-~l~~lp~-~~---~l~~L~~L~~L~l~~N~~l~~i~--~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~ 177 (239)
T 2xwt_C 106 LLKFLGIFNT-GLKMFPD-LT---KVYSTDIFFILEITDNPYMTSIP--VNAFQGLCNETLTLKLYN-NGFTSVQGYAFN 177 (239)
T ss_dssp TCCEEEEEEE-CCCSCCC-CT---TCCBCCSEEEEEEESCTTCCEEC--TTTTTTTBSSEEEEECCS-CCCCEECTTTTT
T ss_pred CCCEEeCCCC-CCccccc-cc---cccccccccEEECCCCcchhhcC--cccccchhcceeEEEcCC-CCCcccCHhhcC
Confidence 9999999997 6777887 43 567777 99999965888887 46688999999 999998 5677887652 2
Q ss_pred CCccceeeecCCCCCCCCCCCC--CC-CCCcEEeecCCchhhhhhcccCCCCcccccccceEEeccC
Q 045261 155 PSSLLDLCIFNCPNLTSLPKVG--LP-SSLLELTIFDCPKLRKECKRDKGKGWSKIANIPMFLIDDT 218 (227)
Q Consensus 155 ~~~L~~l~i~~c~~l~~~~~~~--~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 218 (227)
.++|++|++++++.++.++... .+ ++|++|+++++. ++. .+. ..+.+++.+++.+.
T Consensus 178 ~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~-----l~~--~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 178 GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTA-----LPS--KGLEHLKELIARNT 236 (239)
T ss_dssp TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCC-----CCC--TTCTTCSEEECTTC
T ss_pred CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-ccc-----CCh--hHhccCceeeccCc
Confidence 3689999999987788887643 35 899999999854 221 111 14667777776654
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-16 Score=132.10 Aligned_cols=175 Identities=19% Similarity=0.220 Sum_probs=122.4
Q ss_pred CCCCccEEEeccCCCCCcC-CcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 3 LPESISSVEIRRCEKLGAL-PSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
+.++++.|+++++. +..+ +..+.++++|++|+++++. +..++.. ..+++|++|++ ++ +.++ .+++..+..++
T Consensus 62 ~~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L-~~-n~l~-~~~~~~~~~l~ 136 (440)
T 3zyj_A 62 ISTNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLEL-FD-NRLT-TIPNGAFVYLS 136 (440)
T ss_dssp CCTTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEEC-CS-SCCS-SCCTTTSCSCS
T ss_pred CCCCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEEC-CC-CcCC-eeCHhHhhccc
Confidence 45778889998864 4444 4678888899999998864 6666543 67888899988 66 4555 45555678888
Q ss_pred ccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccc
Q 045261 80 SLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLL 159 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~ 159 (227)
+|++|+++++ .+..++.... ..+++|++|++++++.+..++ ...+.++++|++|++++ +.+..+|.....++|+
T Consensus 137 ~L~~L~L~~N-~i~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~--~~~~~~l~~L~~L~L~~-n~l~~~~~~~~l~~L~ 210 (440)
T 3zyj_A 137 KLKELWLRNN-PIESIPSYAF--NRIPSLRRLDLGELKRLSYIS--EGAFEGLSNLRYLNLAM-CNLREIPNLTPLIKLD 210 (440)
T ss_dssp SCCEEECCSC-CCCEECTTTT--TTCTTCCEEECCCCTTCCEEC--TTTTTTCSSCCEEECTT-SCCSSCCCCTTCSSCC
T ss_pred cCceeeCCCC-cccccCHHHh--hhCcccCEeCCCCCCCcceeC--cchhhcccccCeecCCC-CcCccccccCCCcccC
Confidence 8888888886 5666665332 267888888888888887777 45677888888888888 4677777656667777
Q ss_pred eeeecCCCCCCCCCCC--CCCCCCcEEeecCC
Q 045261 160 DLCIFNCPNLTSLPKV--GLPSSLLELTIFDC 189 (227)
Q Consensus 160 ~l~i~~c~~l~~~~~~--~~~~~L~~L~l~~c 189 (227)
+|+++++. ++.++.. ..+++|++|++.++
T Consensus 211 ~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 211 ELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp EEECTTSC-CCEECTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCc-cCccChhhhccCccCCEEECCCC
Confidence 78777763 3333221 23456666666554
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.5e-16 Score=131.28 Aligned_cols=177 Identities=20% Similarity=0.209 Sum_probs=126.4
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
+.++++.|+++++....-.+..+.++++|++|+++++. +..++.. ..+++|+.|++ ++ +.+. .+++..+..+++
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L-~~-n~l~-~~~~~~~~~l~~ 148 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLEL-FD-NWLT-VIPSGAFEYLSK 148 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEEC-CS-SCCS-BCCTTTSSSCTT
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEEC-CC-CcCC-ccChhhhcccCC
Confidence 56789999999965433346778999999999999874 6666543 67899999999 66 4555 555556888999
Q ss_pred cceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccce
Q 045261 81 LRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLD 160 (227)
Q Consensus 81 L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~ 160 (227)
|++|+++++ .+..++.... ..+++|+.|++++|+.+..++ ...+..+++|++|++++ +.+..+|.....++|++
T Consensus 149 L~~L~L~~N-~l~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~--~~~~~~l~~L~~L~L~~-n~l~~~~~~~~l~~L~~ 222 (452)
T 3zyi_A 149 LRELWLRNN-PIESIPSYAF--NRVPSLMRLDLGELKKLEYIS--EGAFEGLFNLKYLNLGM-CNIKDMPNLTPLVGLEE 222 (452)
T ss_dssp CCEEECCSC-CCCEECTTTT--TTCTTCCEEECCCCTTCCEEC--TTTTTTCTTCCEEECTT-SCCSSCCCCTTCTTCCE
T ss_pred CCEEECCCC-CcceeCHhHH--hcCCcccEEeCCCCCCccccC--hhhccCCCCCCEEECCC-CcccccccccccccccE
Confidence 999999987 6777765332 267899999999888888887 45678888888888888 46777776556677777
Q ss_pred eeecCCCCCCCCCC-CCCCCCCcEEeecCC
Q 045261 161 LCIFNCPNLTSLPK-VGLPSSLLELTIFDC 189 (227)
Q Consensus 161 l~i~~c~~l~~~~~-~~~~~~L~~L~l~~c 189 (227)
|+++++..-+..+. ...+++|++|+++++
T Consensus 223 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252 (452)
T ss_dssp EECTTSCCSEECGGGGTTCTTCCEEECTTS
T ss_pred EECcCCcCcccCcccccCccCCCEEEeCCC
Confidence 77777543222121 123455555555544
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-15 Score=120.08 Aligned_cols=175 Identities=23% Similarity=0.336 Sum_probs=136.5
Q ss_pred CCCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 3 LPESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
+.++++.|+++++. ++.++ ..+.++++|++|+++++. +..++.. ..+++|++|++ ++ +.+. .+++..+..++
T Consensus 35 ~~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l-~~-n~l~-~~~~~~~~~l~ 109 (270)
T 2o6q_A 35 IPADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWV-TD-NKLQ-ALPIGVFDQLV 109 (270)
T ss_dssp CCTTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEEC-CS-SCCC-CCCTTTTTTCS
T ss_pred CCCCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEEC-CC-CcCC-cCCHhHccccc
Confidence 45689999999964 66666 478999999999999864 6777765 56899999999 76 4554 45555678899
Q ss_pred ccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCc
Q 045261 80 SLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSS 157 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~ 157 (227)
+|++|+++++ .+..++.... ..+++|++|++++ +.+..++ ...+..+++|++|++++ +.+..++.. ...++
T Consensus 110 ~L~~L~l~~n-~l~~~~~~~~--~~l~~L~~L~Ls~-n~l~~~~--~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~ 182 (270)
T 2o6q_A 110 NLAELRLDRN-QLKSLPPRVF--DSLTKLTYLSLGY-NELQSLP--KGVFDKLTSLKELRLYN-NQLKRVPEGAFDKLTE 182 (270)
T ss_dssp SCCEEECCSS-CCCCCCTTTT--TTCTTCCEEECCS-SCCCCCC--TTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTT
T ss_pred CCCEEECCCC-ccCeeCHHHh--CcCcCCCEEECCC-CcCCccC--HhHccCCcccceeEecC-CcCcEeChhHhccCCC
Confidence 9999999987 6666665432 2689999999998 5777777 45588999999999999 467777764 34689
Q ss_pred cceeeecCCCCCCCCCCC--CCCCCCcEEeecCCc
Q 045261 158 LLDLCIFNCPNLTSLPKV--GLPSSLLELTIFDCP 190 (227)
Q Consensus 158 L~~l~i~~c~~l~~~~~~--~~~~~L~~L~l~~c~ 190 (227)
|++|+++++ .++.++.. ..+++|+.|++.+++
T Consensus 183 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 183 LKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 999999987 56667653 347899999998765
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=7e-16 Score=122.33 Aligned_cols=176 Identities=18% Similarity=0.210 Sum_probs=120.4
Q ss_pred CCCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCC-C-CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 3 LPESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPE-E-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~-~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
++++|+.|+++++. ++.++ ..+..+++|++|+++++. +..+.. . ..+++|++|++ +++..+. .+.+..+..++
T Consensus 30 ~~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l-~~n~~l~-~~~~~~~~~l~ 105 (285)
T 1ozn_A 30 IPAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDL-SDNAQLR-SVDPATFHGLG 105 (285)
T ss_dssp CCTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEEC-CSCTTCC-CCCTTTTTTCT
T ss_pred CCCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeC-CCCCCcc-ccCHHHhcCCc
Confidence 56788889988854 55554 567888888888888864 555533 3 67788888888 7755454 44455677888
Q ss_pred ccceEEeccCCCCCccC-ccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCC
Q 045261 80 SLRWLLIERCDESECFP-DGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPS 156 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~-~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~ 156 (227)
+|++|+++++ .+..++ ..+. .+++|++|++++ +.+..++ ...+..+++|++|+++++ .+..++.. ...+
T Consensus 106 ~L~~L~l~~n-~l~~~~~~~~~---~l~~L~~L~l~~-n~l~~~~--~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~ 177 (285)
T 1ozn_A 106 RLHTLHLDRC-GLQELGPGLFR---GLAALQYLYLQD-NALQALP--DDTFRDLGNLTHLFLHGN-RISSVPERAFRGLH 177 (285)
T ss_dssp TCCEEECTTS-CCCCCCTTTTT---TCTTCCEEECCS-SCCCCCC--TTTTTTCTTCCEEECCSS-CCCEECTTTTTTCT
T ss_pred CCCEEECCCC-cCCEECHhHhh---CCcCCCEEECCC-CcccccC--HhHhccCCCccEEECCCC-cccccCHHHhcCcc
Confidence 8888888887 555553 3333 578888888887 4566665 355778888888888884 56666653 3456
Q ss_pred ccceeeecCCCCCCCCCC-CCCCCCCcEEeecCCc
Q 045261 157 SLLDLCIFNCPNLTSLPK-VGLPSSLLELTIFDCP 190 (227)
Q Consensus 157 ~L~~l~i~~c~~l~~~~~-~~~~~~L~~L~l~~c~ 190 (227)
+|++|+++++..-+..+. ...+++|++|+++++.
T Consensus 178 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ccCEEECCCCcccccCHhHccCcccccEeeCCCCc
Confidence 788888887653333232 2346778888888763
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.1e-17 Score=146.86 Aligned_cols=180 Identities=16% Similarity=0.145 Sum_probs=108.9
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccc
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLR 82 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~ 82 (227)
+++|+.|++++|...+.+|..+.++++|++|++++|.....+|.. ..+++|+.|++ +++ .+.+.+ +..++.+++|+
T Consensus 465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L-~~N-~l~~~~-p~~l~~l~~L~ 541 (768)
T 3rgz_A 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL-SNN-SFSGNI-PAELGDCRSLI 541 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC-CSS-CCEEEC-CGGGGGCTTCC
T ss_pred CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEEC-CCC-cccCcC-CHHHcCCCCCC
Confidence 567778888877666667777777777888887777644455554 66777777777 664 343233 34567777777
Q ss_pred eEEeccCCCCCccCccCcC-------------------------------------------------------------
Q 045261 83 WLLIERCDESECFPDGMMG------------------------------------------------------------- 101 (227)
Q Consensus 83 ~L~l~~~~~l~~l~~~~~~------------------------------------------------------------- 101 (227)
+|++++|.....+|..+..
T Consensus 542 ~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 621 (768)
T 3rgz_A 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621 (768)
T ss_dssp EEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEE
T ss_pred EEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceec
Confidence 7777765433334432210
Q ss_pred ------CCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC-CCCCccceeeecCCCCCCCCCC
Q 045261 102 ------MTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV-GLPSSLLDLCIFNCPNLTSLPK 174 (227)
Q Consensus 102 ------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~l~i~~c~~l~~~~~ 174 (227)
...+++|+.|+++++.-...+| .+++++++|+.|+++++.-.+.+|.. +..++|+.|+++++..-+.+|.
T Consensus 622 g~~~~~~~~l~~L~~LdLs~N~l~g~ip---~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIP---KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp EECCCSCSSSBCCCEEECCSSCCBSCCC---GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred ccCchhhhccccccEEECcCCcccccCC---HHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh
Confidence 0023456677777654444566 66667777777777774443455543 4456666677766665555554
Q ss_pred C-CCCCCCcEEeecCC
Q 045261 175 V-GLPSSLLELTIFDC 189 (227)
Q Consensus 175 ~-~~~~~L~~L~l~~c 189 (227)
. ..+++|++|+++++
T Consensus 699 ~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 699 AMSALTMLTEIDLSNN 714 (768)
T ss_dssp GGGGCCCCSEEECCSS
T ss_pred HHhCCCCCCEEECcCC
Confidence 2 33566666666654
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=128.95 Aligned_cols=82 Identities=17% Similarity=0.174 Sum_probs=34.0
Q ss_pred CCccEEEecc-CCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccc
Q 045261 5 ESISSVEIRR-CEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLR 82 (227)
Q Consensus 5 ~~L~~L~l~~-~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~ 82 (227)
++|++|++++ +...+.+|..++++++|++|+++++.....+|.. ..+++|++|++ ++ +.+.+. .+..+..+++|+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L-s~-N~l~~~-~p~~~~~l~~L~ 152 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF-SY-NALSGT-LPPSISSLPNLV 152 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEEC-CS-SEEESC-CCGGGGGCTTCC
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeC-CC-CccCCc-CChHHhcCCCCC
Confidence 3444444443 2222334444444444444444443322233332 34445555555 33 222211 222344455555
Q ss_pred eEEeccC
Q 045261 83 WLLIERC 89 (227)
Q Consensus 83 ~L~l~~~ 89 (227)
+|+++++
T Consensus 153 ~L~L~~N 159 (313)
T 1ogq_A 153 GITFDGN 159 (313)
T ss_dssp EEECCSS
T ss_pred eEECcCC
Confidence 5555544
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-15 Score=127.53 Aligned_cols=172 Identities=22% Similarity=0.344 Sum_probs=102.7
Q ss_pred CCccEEEeccCCCCCcCCc-ccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCcc
Q 045261 5 ESISSVEIRRCEKLGALPS-DMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L 81 (227)
++|+.|++++| .++.++. .+.++++|++|+++++. +..++.. ..+++|+.|++ .+++.+. .+.+..+..+++|
T Consensus 112 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l-~~~~~l~-~i~~~~~~~l~~L 187 (440)
T 3zyj_A 112 ANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDL-GELKRLS-YISEGAFEGLSNL 187 (440)
T ss_dssp SSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEEC-CCCTTCC-EECTTTTTTCSSC
T ss_pred ccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCC-CCCCCcc-eeCcchhhccccc
Confidence 44455555543 2333332 34555555555555542 4444432 44556666666 5544443 3344445666667
Q ss_pred ceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCccc
Q 045261 82 RWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLL 159 (227)
Q Consensus 82 ~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~ 159 (227)
++|+++++ .++.+|... .+++|++|+++++ .+..++ ...+..+++|++|++++ +.+..++.. ...++|+
T Consensus 188 ~~L~L~~n-~l~~~~~~~----~l~~L~~L~Ls~N-~l~~~~--~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~ 258 (440)
T 3zyj_A 188 RYLNLAMC-NLREIPNLT----PLIKLDELDLSGN-HLSAIR--PGSFQGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLV 258 (440)
T ss_dssp CEEECTTS-CCSSCCCCT----TCSSCCEEECTTS-CCCEEC--TTTTTTCTTCCEEECTT-CCCCEECTTSSTTCTTCC
T ss_pred CeecCCCC-cCccccccC----CCcccCEEECCCC-ccCccC--hhhhccCccCCEEECCC-CceeEEChhhhcCCCCCC
Confidence 77777665 555666422 5677777777774 555553 36777888888888888 456665443 3457888
Q ss_pred eeeecCCCCCCCCCCC--CCCCCCcEEeecCCc
Q 045261 160 DLCIFNCPNLTSLPKV--GLPSSLLELTIFDCP 190 (227)
Q Consensus 160 ~l~i~~c~~l~~~~~~--~~~~~L~~L~l~~c~ 190 (227)
+|+++++ .++.++.. ..+++|+.|++++++
T Consensus 259 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 259 EINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred EEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 8888886 45666653 336889999998754
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-15 Score=128.33 Aligned_cols=153 Identities=24% Similarity=0.380 Sum_probs=87.3
Q ss_pred cCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCC
Q 045261 25 MHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGM 102 (227)
Q Consensus 25 ~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~ 102 (227)
+.++++|++|+++++. +..++.. ..+++|+.|++ ++|+.+. .+....+..+++|++|+++++ .+..+|...
T Consensus 143 ~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l-~~~~~l~-~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~--- 215 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDL-GELKKLE-YISEGAFEGLFNLKYLNLGMC-NIKDMPNLT--- 215 (452)
T ss_dssp SSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEEC-CCCTTCC-EECTTTTTTCTTCCEEECTTS-CCSSCCCCT---
T ss_pred hcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeC-CCCCCcc-ccChhhccCCCCCCEEECCCC-ccccccccc---
Confidence 3444444444444432 3333332 34455555555 4444443 333334555566666666655 455554322
Q ss_pred CCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCccceeeecCCCCCCCCCCC--CCC
Q 045261 103 TLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLLDLCIFNCPNLTSLPKV--GLP 178 (227)
Q Consensus 103 ~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l~i~~c~~l~~~~~~--~~~ 178 (227)
.+++|++|++++ +.+..++ ...+.++++|++|+++++ .+..++.. ...++|+.|+++++ .++.++.. ..+
T Consensus 216 -~l~~L~~L~Ls~-N~l~~~~--~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 289 (452)
T 3zyi_A 216 -PLVGLEELEMSG-NHFPEIR--PGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPL 289 (452)
T ss_dssp -TCTTCCEEECTT-SCCSEEC--GGGGTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTC
T ss_pred -ccccccEEECcC-CcCcccC--cccccCccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccc
Confidence 466777777776 3444443 266777888888888874 45555433 34578888888886 45666653 336
Q ss_pred CCCcEEeecCCc
Q 045261 179 SSLLELTIFDCP 190 (227)
Q Consensus 179 ~~L~~L~l~~c~ 190 (227)
++|++|++++++
T Consensus 290 ~~L~~L~L~~Np 301 (452)
T 3zyi_A 290 RYLVELHLHHNP 301 (452)
T ss_dssp TTCCEEECCSSC
T ss_pred cCCCEEEccCCC
Confidence 889999998754
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-15 Score=120.58 Aligned_cols=176 Identities=20% Similarity=0.304 Sum_probs=137.3
Q ss_pred CCCCccEEEeccCCCCCcC-CcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 3 LPESISSVEIRRCEKLGAL-PSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
-+++|+.|+++++. ++.+ |..+.++++|++|+++++..+..++.. ..+++|++|++ +++ .+. .+.+..+..++
T Consensus 54 ~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l-~~n-~l~-~~~~~~~~~l~ 129 (285)
T 1ozn_A 54 ACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL-DRC-GLQ-ELGPGLFRGLA 129 (285)
T ss_dssp TCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC-TTS-CCC-CCCTTTTTTCT
T ss_pred cCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC-CCC-cCC-EECHhHhhCCc
Confidence 36899999999974 5554 678999999999999998767777443 78899999999 774 454 44455688999
Q ss_pred ccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccC-CCC-CCCCc
Q 045261 80 SLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSL-PKV-GLPSS 157 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~-~~~-~~~~~ 157 (227)
+|++|+++++ .+..++.... ..+++|++|++++ +.+..++ ...+..+++|++|+++++ .+..+ +.. ...++
T Consensus 130 ~L~~L~l~~n-~l~~~~~~~~--~~l~~L~~L~l~~-n~l~~~~--~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~ 202 (285)
T 1ozn_A 130 ALQYLYLQDN-ALQALPDDTF--RDLGNLTHLFLHG-NRISSVP--ERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGR 202 (285)
T ss_dssp TCCEEECCSS-CCCCCCTTTT--TTCTTCCEEECCS-SCCCEEC--TTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTT
T ss_pred CCCEEECCCC-cccccCHhHh--ccCCCccEEECCC-CcccccC--HHHhcCccccCEEECCCC-cccccCHhHccCccc
Confidence 9999999997 6777775432 2689999999998 5777777 356889999999999995 46555 332 45679
Q ss_pred cceeeecCCCCCCCCCC--CCCCCCCcEEeecCCc
Q 045261 158 LLDLCIFNCPNLTSLPK--VGLPSSLLELTIFDCP 190 (227)
Q Consensus 158 L~~l~i~~c~~l~~~~~--~~~~~~L~~L~l~~c~ 190 (227)
|+.|+++++. ++.++. ...+++|++|++++++
T Consensus 203 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 203 LMTLYLFANN-LSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCC
Confidence 9999999974 555553 3457899999999875
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.67 E-value=9.4e-16 Score=118.56 Aligned_cols=177 Identities=19% Similarity=0.118 Sum_probs=137.1
Q ss_pred CCCCccEEEeccCCCCCcCCc-ccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 3 LPESISSVEIRRCEKLGALPS-DMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
-+++|+.|++++|..++.++. .+.++++|++|++++|..+..++.. ..+++|+.|++ +++ .++ .+ +. +..++
T Consensus 53 ~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l-~~n-~l~-~l-p~-~~~l~ 127 (239)
T 2xwt_C 53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI-FNT-GLK-MF-PD-LTKVY 127 (239)
T ss_dssp TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEE-EEE-CCC-SC-CC-CTTCC
T ss_pred CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeC-CCC-CCc-cc-cc-ccccc
Confidence 368999999999765777774 7889999999999986678888765 67899999999 764 454 33 32 77788
Q ss_pred ccc---eEEeccCCCCCccCccCcCCCCCCccc-eEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCC--
Q 045261 80 SLR---WLLIERCDESECFPDGMMGMTLPTSLV-HLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVG-- 153 (227)
Q Consensus 80 ~L~---~L~l~~~~~l~~l~~~~~~~~~~~~L~-~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~-- 153 (227)
+|+ +|+++++..++.++.... ..+++|+ .|++++ +.+..+| ...+.. ++|++|+++++..++.++...
T Consensus 128 ~L~~L~~L~l~~N~~l~~i~~~~~--~~l~~L~~~L~l~~-n~l~~i~--~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~ 201 (239)
T 2xwt_C 128 STDIFFILEITDNPYMTSIPVNAF--QGLCNETLTLKLYN-NGFTSVQ--GYAFNG-TKLDAVYLNKNKYLTVIDKDAFG 201 (239)
T ss_dssp BCCSEEEEEEESCTTCCEECTTTT--TTTBSSEEEEECCS-CCCCEEC--TTTTTT-CEEEEEECTTCTTCCEECTTTTT
T ss_pred ccccccEEECCCCcchhhcCcccc--cchhcceeEEEcCC-CCCcccC--HhhcCC-CCCCEEEcCCCCCcccCCHHHhh
Confidence 887 999999867888886532 2688999 999998 6777888 334444 899999999976688887643
Q ss_pred CC-CccceeeecCCCCCCCCCCCCCCCCCcEEeecCCchh
Q 045261 154 LP-SSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCPKL 192 (227)
Q Consensus 154 ~~-~~L~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~c~~l 192 (227)
.. ++|+.|+++++ .++.+|.. .+++|+.|++.++..|
T Consensus 202 ~l~~~L~~L~l~~N-~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 202 GVYSGPSLLDVSQT-SVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp TCSBCCSEEECTTC-CCCCCCCT-TCTTCSEEECTTC---
T ss_pred ccccCCcEEECCCC-ccccCChh-HhccCceeeccCccCC
Confidence 34 78999999984 56777765 5789999999987653
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-14 Score=112.15 Aligned_cols=193 Identities=25% Similarity=0.348 Sum_probs=144.5
Q ss_pred CccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 6 SISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 6 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+.+.+++++ ..++.+|..+. ++|++|+++++. +..++.. ..+++|++|++ ++ +.++ .+++..+..+++|++
T Consensus 17 ~~~~l~~~~-~~l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l-~~-n~l~-~i~~~~~~~l~~L~~ 89 (270)
T 2o6q_A 17 NKNSVDCSS-KKLTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYL-ND-NKLQ-TLPAGIFKELKNLET 89 (270)
T ss_dssp TTTEEECTT-SCCSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEEC-CS-SCCS-CCCTTTTSSCTTCCE
T ss_pred CCCEEEccC-CCCCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEEC-CC-CccC-eeChhhhcCCCCCCE
Confidence 567889988 56778886554 689999999975 7777753 78899999999 77 4554 555656788999999
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCcccee
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLLDL 161 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l 161 (227)
|+++++ .+..++.... ..+++|++|++++ +.+..++ ...+..+++|++|++++ +.+..++.. ...++|++|
T Consensus 90 L~l~~n-~l~~~~~~~~--~~l~~L~~L~l~~-n~l~~~~--~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 90 LWVTDN-KLQALPIGVF--DQLVNLAELRLDR-NQLKSLP--PRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp EECCSS-CCCCCCTTTT--TTCSSCCEEECCS-SCCCCCC--TTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred EECCCC-cCCcCCHhHc--ccccCCCEEECCC-CccCeeC--HHHhCcCcCCCEEECCC-CcCCccCHhHccCCccccee
Confidence 999997 6777776442 2688999999998 5677776 46688999999999999 468888764 456899999
Q ss_pred eecCCCCCCCCCCC--CCCCCCcEEeecCCchhhhhhcccCCCCcccccccceEEeccC
Q 045261 162 CIFNCPNLTSLPKV--GLPSSLLELTIFDCPKLRKECKRDKGKGWSKIANIPMFLIDDT 218 (227)
Q Consensus 162 ~i~~c~~l~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 218 (227)
+++++. ++.++.. ..+++|++|+++++. ++. .....+..+.++..+.+.+.
T Consensus 163 ~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~----~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 163 RLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQ-LKR----VPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp ECCSSC-CSCCCTTTTTTCTTCCEEECCSSC-CSC----CCTTTTTTCTTCCEEECCSS
T ss_pred EecCCc-CcEeChhHhccCCCcCEEECCCCc-CCc----CCHHHhccccCCCEEEecCC
Confidence 999864 5666653 347899999999873 221 12223445666777777664
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.65 E-value=7.8e-15 Score=115.65 Aligned_cols=173 Identities=25% Similarity=0.307 Sum_probs=133.7
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+++|+.|+++++ .+..++ .+..+++|++|+++++. +..++....+++|++|++ +++ .++ .+.+..+..+++|++
T Consensus 40 l~~L~~L~l~~~-~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L-~~n-~l~-~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 40 LNSIDQIIANNS-DIKSVQ-GIQYLPNVRYLALGGNK-LHDISALKELTNLTYLIL-TGN-QLQ-SLPNGVFDKLTNLKE 113 (272)
T ss_dssp HTTCCEEECTTS-CCCCCT-TGGGCTTCCEEECTTSC-CCCCGGGTTCTTCCEEEC-TTS-CCC-CCCTTTTTTCTTCCE
T ss_pred ccceeeeeeCCC-Cccccc-ccccCCCCcEEECCCCC-CCCchhhcCCCCCCEEEC-CCC-ccC-ccChhHhcCCcCCCE
Confidence 468999999996 456555 48889999999999975 666654478899999999 774 555 455556789999999
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCcccee
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLLDL 161 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l 161 (227)
|+++++ .+..++.... ..+++|++|+++++ .+..++ ...+.++++|++|++++| .+..++.. ..+++|++|
T Consensus 114 L~L~~n-~l~~~~~~~~--~~l~~L~~L~L~~n-~l~~~~--~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 114 LVLVEN-QLQSLPDGVF--DKLTNLTYLNLAHN-QLQSLP--KGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDL 186 (272)
T ss_dssp EECTTS-CCCCCCTTTT--TTCTTCCEEECCSS-CCCCCC--TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred EECCCC-cCCccCHHHh--ccCCCCCEEECCCC-ccCccC--HHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEE
Confidence 999998 6667766432 26889999999985 677776 356789999999999995 67777663 456899999
Q ss_pred eecCCCCCCCCCCC--CCCCCCcEEeecCCc
Q 045261 162 CIFNCPNLTSLPKV--GLPSSLLELTIFDCP 190 (227)
Q Consensus 162 ~i~~c~~l~~~~~~--~~~~~L~~L~l~~c~ 190 (227)
+++++. ++.++.. ..+++|++|++.+++
T Consensus 187 ~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 187 RLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp ECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCc-CCccCHHHHhCCcCCCEEEccCCC
Confidence 999875 4555543 457999999998753
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-15 Score=135.82 Aligned_cols=131 Identities=19% Similarity=0.206 Sum_probs=62.8
Q ss_pred CCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
++|+.|++++|...+.+|..+.++++|++|++++|.....+|.. ..+++|++|++ +++ .+.+. .+..+..+++|++
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L-~~N-~l~~~-~p~~l~~l~~L~~ 494 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL-DFN-DLTGE-IPSGLSNCTNLNW 494 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC-CSS-CCCSC-CCGGGGGCTTCCE
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe-cCC-cccCc-CCHHHhcCCCCCE
Confidence 34444444444333334444444444444444444322233333 34455555555 442 23212 2334555566666
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCC
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCP 144 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~ 144 (227)
|++++|.....+|..++ .+++|+.|++++|.....+| ..+..+++|+.|++++|+
T Consensus 495 L~L~~N~l~~~~p~~~~---~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 495 ISLSNNRLTGEIPKWIG---RLENLAILKLSNNSFSGNIP---AELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp EECCSSCCCSCCCGGGG---GCTTCCEEECCSSCCEEECC---GGGGGCTTCCEEECCSSE
T ss_pred EEccCCccCCcCChHHh---cCCCCCEEECCCCcccCcCC---HHHcCCCCCCEEECCCCc
Confidence 66665533334555443 45566666666544444455 555555666666655543
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.1e-15 Score=126.07 Aligned_cols=81 Identities=16% Similarity=0.217 Sum_probs=35.8
Q ss_pred CCCccEEEeccCCCCCcC-CcccCCCCCcceEeecCCCCCcccCC-C-CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 4 PESISSVEIRRCEKLGAL-PSDMHKLNSLQDLDIRECPSIVSFPE-E-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~~~~-~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
.++++.|+++++. ++.+ +..+.++++|++|+++++. +..+.+ . ..+++|+.|++ ++ +.+. .+++..+..+++
T Consensus 31 ~~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L-~~-n~l~-~~~~~~~~~l~~ 105 (477)
T 2id5_A 31 PTETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGL-RS-NRLK-LIPLGVFTGLSN 105 (477)
T ss_dssp CTTCSEEECCSSC-CCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEC-CS-SCCC-SCCTTSSTTCTT
T ss_pred CCCCcEEECCCCc-cceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEEC-CC-CcCC-ccCcccccCCCC
Confidence 3455555555532 3332 3445555555555555542 333322 1 44455555555 33 2232 222333444445
Q ss_pred cceEEeccC
Q 045261 81 LRWLLIERC 89 (227)
Q Consensus 81 L~~L~l~~~ 89 (227)
|++|+++++
T Consensus 106 L~~L~Ls~n 114 (477)
T 2id5_A 106 LTKLDISEN 114 (477)
T ss_dssp CCEEECTTS
T ss_pred CCEEECCCC
Confidence 555555444
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-17 Score=135.40 Aligned_cols=179 Identities=16% Similarity=0.177 Sum_probs=111.4
Q ss_pred CCCccEEEeccCCCCCc-CCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCcc
Q 045261 4 PESISSVEIRRCEKLGA-LPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~-lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L 81 (227)
+++|+.|++++|..... ++..+..+++|++|++++|......+.. ..+++|++|++ ++|..+++...+..+..+++|
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L-~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL-SGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC-TTCBSCCHHHHHHHHHHCTTC
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC-CCCCCCCHHHHHHHHhcCCCC
Confidence 46777777777652222 5556677777888888777422223322 45778888888 776556533334446677788
Q ss_pred ceEEeccCCCCCc--cCccCcCCCCCC-ccceEEEecCC-Cc--cccCCCCCCccCCCCccEEeecCCCCCcc--CCCCC
Q 045261 82 RWLLIERCDESEC--FPDGMMGMTLPT-SLVHLNIVEFQ-KL--KNLSSSSSGFHSLTSLRRLLIQDCPNLTS--LPKVG 153 (227)
Q Consensus 82 ~~L~l~~~~~l~~--l~~~~~~~~~~~-~L~~L~l~~~~-~l--~~l~~~~~~l~~l~~L~~L~l~~c~~l~~--~~~~~ 153 (227)
++|++++|..+.. ++..+. .++ +|++|++++|. .+ ..++ ..+.++++|++|++++|..++. ++...
T Consensus 171 ~~L~l~~~~~l~~~~~~~~~~---~l~~~L~~L~l~~~~~~~~~~~l~---~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 244 (336)
T 2ast_B 171 DELNLSWCFDFTEKHVQVAVA---HVSETITQLNLSGYRKNLQKSDLS---TLVRRCPNLVHLDLSDSVMLKNDCFQEFF 244 (336)
T ss_dssp CEEECCCCTTCCHHHHHHHHH---HSCTTCCEEECCSCGGGSCHHHHH---HHHHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred CEEcCCCCCCcChHHHHHHHH---hcccCCCEEEeCCCcccCCHHHHH---HHHhhCCCCCEEeCCCCCcCCHHHHHHHh
Confidence 8888887755543 343333 466 78888888764 33 3344 4556778888888888764443 22223
Q ss_pred CCCccceeeecCCCCCCCCC--CCCCCCCCcEEeecCC
Q 045261 154 LPSSLLDLCIFNCPNLTSLP--KVGLPSSLLELTIFDC 189 (227)
Q Consensus 154 ~~~~L~~l~i~~c~~l~~~~--~~~~~~~L~~L~l~~c 189 (227)
..++|++|++++|..+.... ....+++|++|++++|
T Consensus 245 ~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 245 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 45788888888886443321 1234678888888887
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-14 Score=114.93 Aligned_cols=174 Identities=20% Similarity=0.203 Sum_probs=127.4
Q ss_pred CCCCccEEEeccCCCCCcC-CcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCcc
Q 045261 3 LPESISSVEIRRCEKLGAL-PSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L 81 (227)
++++++.|+++++. ++.+ +..+.++++|++|+++++. +..++....+++|+.|++ ++ +.+. .+ +..+..+++|
T Consensus 29 ~~~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L-s~-N~l~-~l-~~~~~~l~~L 102 (290)
T 1p9a_G 29 LPKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDL-SH-NQLQ-SL-PLLGQTLPAL 102 (290)
T ss_dssp CCTTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEEC-CS-SCCS-SC-CCCTTTCTTC
T ss_pred CCCCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCEEEC-CC-CcCC-cC-chhhccCCCC
Confidence 45678888888864 4443 4677888889999988864 666666677888999998 66 4554 33 3457788899
Q ss_pred ceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCccc
Q 045261 82 RWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLL 159 (227)
Q Consensus 82 ~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~ 159 (227)
++|+++++ .++.++.... ..+++|++|++++ +.+..++ ...+..+++|++|++++ +.++.++.. ...++|+
T Consensus 103 ~~L~l~~N-~l~~l~~~~~--~~l~~L~~L~L~~-N~l~~~~--~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~ 175 (290)
T 1p9a_G 103 TVLDVSFN-RLTSLPLGAL--RGLGELQELYLKG-NELKTLP--PGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLENLD 175 (290)
T ss_dssp CEEECCSS-CCCCCCSSTT--TTCTTCCEEECTT-SCCCCCC--TTTTTTCTTCCEEECTT-SCCSCCCTTTTTTCTTCC
T ss_pred CEEECCCC-cCcccCHHHH--cCCCCCCEEECCC-CCCCccC--hhhcccccCCCEEECCC-CcCCccCHHHhcCcCCCC
Confidence 99999987 6777764422 2678899999988 5677776 45577889999999988 568888764 3467899
Q ss_pred eeeecCCCCCCCCCCC-CCCCCCcEEeecCCc
Q 045261 160 DLCIFNCPNLTSLPKV-GLPSSLLELTIFDCP 190 (227)
Q Consensus 160 ~l~i~~c~~l~~~~~~-~~~~~L~~L~l~~c~ 190 (227)
+|+++++. ++.+|.. ...++|+.+++++++
T Consensus 176 ~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 176 TLLLQENS-LYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp EEECCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred EEECCCCc-CCccChhhcccccCCeEEeCCCC
Confidence 99998854 5677664 335789999998654
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-14 Score=117.18 Aligned_cols=178 Identities=18% Similarity=0.232 Sum_probs=114.5
Q ss_pred CCCCccEEEeccCCCCCcCCc-ccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 3 LPESISSVEIRRCEKLGALPS-DMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
+++++++|+++++ .++.+|. .+.++++|++|+++++...+.++.. ..+++++++.+ .+++++. .+.+..+..++
T Consensus 28 l~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~-~~~N~l~-~l~~~~f~~l~ 104 (350)
T 4ay9_X 28 LPRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI-EKANNLL-YINPEAFQNLP 104 (350)
T ss_dssp CCTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE-EEETTCC-EECTTSBCCCT
T ss_pred cCCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc-ccCCccc-ccCchhhhhcc
Confidence 5678999999995 6788885 6899999999999998766667654 56788887766 6778887 66677789999
Q ss_pred ccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCC-CccEEeecCCCCCccCCCCC-CCCc
Q 045261 80 SLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLT-SLRRLLIQDCPNLTSLPKVG-LPSS 157 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~-~L~~L~l~~c~~l~~~~~~~-~~~~ 157 (227)
+|++|+++++ .+..++.... ....++..+++.+++.+..++ ...+..+. .++.|++++ +.++.++... ...+
T Consensus 105 ~L~~L~l~~n-~l~~~~~~~~--~~~~~l~~l~l~~~~~i~~l~--~~~f~~~~~~l~~L~L~~-N~i~~i~~~~f~~~~ 178 (350)
T 4ay9_X 105 NLQYLLISNT-GIKHLPDVHK--IHSLQKVLLDIQDNINIHTIE--RNSFVGLSFESVILWLNK-NGIQEIHNSAFNGTQ 178 (350)
T ss_dssp TCCEEEEEEE-CCSSCCCCTT--CCBSSCEEEEEESCTTCCEEC--TTSSTTSBSSCEEEECCS-SCCCEECTTSSTTEE
T ss_pred cccccccccc-ccccCCchhh--cccchhhhhhhcccccccccc--ccchhhcchhhhhhcccc-ccccCCChhhccccc
Confidence 9999999987 6666654332 123455566666656666655 23344433 355555555 3455554431 2234
Q ss_pred cceeeecCCCCCCCCCCC--CCCCCCcEEeecCC
Q 045261 158 LLDLCIFNCPNLTSLPKV--GLPSSLLELTIFDC 189 (227)
Q Consensus 158 L~~l~i~~c~~l~~~~~~--~~~~~L~~L~l~~c 189 (227)
++++.+.+++.++.++.. ..+++|++|+++++
T Consensus 179 L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N 212 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRT 212 (350)
T ss_dssp EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS
T ss_pred hhHHhhccCCcccCCCHHHhccCcccchhhcCCC
Confidence 555555555555555542 22445555555543
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=4.9e-15 Score=118.92 Aligned_cols=167 Identities=14% Similarity=0.273 Sum_probs=88.2
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+++|+.|++++| .+..++. +..+++|++|+++++. +..++....+++|+.|++ +++ .+. .+. .+..+++|++
T Consensus 62 l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l-~~n-~l~-~~~--~l~~l~~L~~ 133 (308)
T 1h6u_A 62 LNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDL-TST-QIT-DVT--PLAGLSNLQV 133 (308)
T ss_dssp CTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEEC-TTS-CCC-CCG--GGTTCTTCCE
T ss_pred cCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEEC-CCC-CCC-Cch--hhcCCCCCCE
Confidence 345555555553 3344444 5555555555555543 444433345555555555 443 232 121 2455566666
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeee
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCI 163 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i 163 (227)
|+++++ .+..++. +. .+++|+.|++++ +.+..++ . +..+++|++|++++ +.+..++.....++|++|++
T Consensus 134 L~l~~n-~l~~~~~-l~---~l~~L~~L~l~~-n~l~~~~---~-l~~l~~L~~L~l~~-n~l~~~~~l~~l~~L~~L~L 202 (308)
T 1h6u_A 134 LYLDLN-QITNISP-LA---GLTNLQYLSIGN-AQVSDLT---P-LANLSKLTTLKADD-NKISDISPLASLPNLIEVHL 202 (308)
T ss_dssp EECCSS-CCCCCGG-GG---GCTTCCEEECCS-SCCCCCG---G-GTTCTTCCEEECCS-SCCCCCGGGGGCTTCCEEEC
T ss_pred EECCCC-ccCcCcc-cc---CCCCccEEEccC-CcCCCCh---h-hcCCCCCCEEECCC-CccCcChhhcCCCCCCEEEc
Confidence 666654 4444443 21 456666666665 3455554 2 55666666666666 34555544344566677777
Q ss_pred cCCCCCCCCCCCCCCCCCcEEeecCCc
Q 045261 164 FNCPNLTSLPKVGLPSSLLELTIFDCP 190 (227)
Q Consensus 164 ~~c~~l~~~~~~~~~~~L~~L~l~~c~ 190 (227)
+++. +..++....+++|+.|++++++
T Consensus 203 ~~N~-l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 203 KNNQ-ISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp TTSC-CCBCGGGTTCTTCCEEEEEEEE
T ss_pred cCCc-cCccccccCCCCCCEEEccCCe
Confidence 6653 3344434446677777777654
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.6e-14 Score=120.26 Aligned_cols=199 Identities=18% Similarity=0.192 Sum_probs=146.8
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
-+++|+.|++++|......|..+.++++|++|+++++. +..++.. ..+++|++|++ ++ +.+. ...+..+..+++
T Consensus 54 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L-s~-n~i~-~~~~~~~~~l~~ 129 (477)
T 2id5_A 54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDI-SE-NKIV-ILLDYMFQDLYN 129 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEEC-TT-SCCC-EECTTTTTTCTT
T ss_pred CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEEC-CC-Cccc-cCChhHcccccc
Confidence 36899999999975433347889999999999999864 7777764 67899999999 76 4454 444567889999
Q ss_pred cceEEeccCCCCCccCc-cCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCc
Q 045261 81 LRWLLIERCDESECFPD-GMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSS 157 (227)
Q Consensus 81 L~~L~l~~~~~l~~l~~-~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~ 157 (227)
|++|+++++ .+..++. .+. .+++|++|++++ +.+..++ ...+.++++|+.|++.++ .+..++.. ...++
T Consensus 130 L~~L~l~~n-~l~~~~~~~~~---~l~~L~~L~l~~-n~l~~~~--~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~ 201 (477)
T 2id5_A 130 LKSLEVGDN-DLVYISHRAFS---GLNSLEQLTLEK-CNLTSIP--TEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYR 201 (477)
T ss_dssp CCEEEECCT-TCCEECTTSST---TCTTCCEEEEES-CCCSSCC--HHHHTTCTTCCEEEEESC-CCCEECTTCSCSCTT
T ss_pred CCEEECCCC-ccceeChhhcc---CCCCCCEEECCC-CcCcccC--hhHhcccCCCcEEeCCCC-cCcEeChhhcccCcc
Confidence 999999987 5555543 443 688999999998 4666766 356889999999999995 56665543 45678
Q ss_pred cceeeecCCCCCCCCCCCCC-CCCCcEEeecCCchhhhhhcccCCCCcccccccceEEeccC
Q 045261 158 LLDLCIFNCPNLTSLPKVGL-PSSLLELTIFDCPKLRKECKRDKGKGWSKIANIPMFLIDDT 218 (227)
Q Consensus 158 L~~l~i~~c~~l~~~~~~~~-~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 218 (227)
|++|++++|+.++.++...+ ..+|++|++++|. ++. .....+..+.++..+.+.+.
T Consensus 202 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~----~~~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTA----VPYLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp CCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCS----CCHHHHTTCTTCCEEECCSS
T ss_pred cceeeCCCCccccccCcccccCccccEEECcCCc-ccc----cCHHHhcCccccCeeECCCC
Confidence 99999999998888876433 5699999999874 221 11112334556666666654
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-14 Score=113.85 Aligned_cols=133 Identities=21% Similarity=0.300 Sum_probs=94.8
Q ss_pred CCCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 3 LPESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
+.++|+.|+++++ .++.++ ..+.++++|++|+++++. +..++.. ..+++|+.|++ ++ +.+. .+.+..+..++
T Consensus 26 l~~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L-~~-n~l~-~~~~~~~~~l~ 100 (276)
T 2z62_A 26 LPFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLIL-TG-NPIQ-SLALGAFSGLS 100 (276)
T ss_dssp SCTTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEEC-TT-CCCC-EECTTTTTTCT
T ss_pred CCCCccEEECCCC-cccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEEC-CC-CccC-ccChhhhcCCc
Confidence 4567999999986 455555 478889999999998874 6666653 67889999999 66 4444 34445678888
Q ss_pred ccceEEeccCCCCCccCc-cCcCCCCCCccceEEEecCCCccc--cCCCCCCccCCCCccEEeecCCCCCccC
Q 045261 80 SLRWLLIERCDESECFPD-GMMGMTLPTSLVHLNIVEFQKLKN--LSSSSSGFHSLTSLRRLLIQDCPNLTSL 149 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~~-~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~l~~l~~L~~L~l~~c~~l~~~ 149 (227)
+|++|++.++ .+..++. .+. .+++|++|++++ +.+.. +| ..+.++++|++|+++++ .+..+
T Consensus 101 ~L~~L~l~~n-~l~~~~~~~~~---~l~~L~~L~l~~-n~l~~~~l~---~~~~~l~~L~~L~Ls~N-~l~~~ 164 (276)
T 2z62_A 101 SLQKLVAVET-NLASLENFPIG---HLKTLKELNVAH-NLIQSFKLP---EYFSNLTNLEHLDLSSN-KIQSI 164 (276)
T ss_dssp TCCEEECTTS-CCCCSTTCCCT---TCTTCCEEECCS-SCCCCCCCC---GGGGGCTTCCEEECCSS-CCCEE
T ss_pred cccEEECCCC-CccccCchhcc---cCCCCCEEECcC-CccceecCc---hhhccCCCCCEEECCCC-CCCcC
Confidence 8999988886 5555554 333 678888888887 44544 56 67778888888888874 34443
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.1e-14 Score=123.97 Aligned_cols=175 Identities=18% Similarity=0.086 Sum_probs=98.2
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCccc-CCC-CCCCCcceeEeccCcccccccchhcccccCCcc
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSF-PEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~-~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L 81 (227)
+++|+.|++++| .++++|..+.++++|++|+++++. +..+ +.. ..+++|+.|++ +++... ..++...+..+++|
T Consensus 277 l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l-~~n~~~-~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 277 FSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSI-KGNTKR-LELGTGCLENLENL 352 (606)
T ss_dssp CTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCC-CSBGGGGCGGGCTTCSEEEC-CSCSSC-CBCCSSTTTTCTTC
T ss_pred ccCCCEEeccCC-ccCCCChhhcccccCCEEECccCC-cCcCchhhhhccCcCCEEEC-CCCCcc-cccchhhhhccCcC
Confidence 456777777775 455666666777777777777654 3333 222 55666666666 554322 23333345666677
Q ss_pred ceEEeccCCCCCcc---CccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccC-CCC--CCC
Q 045261 82 RWLLIERCDESECF---PDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSL-PKV--GLP 155 (227)
Q Consensus 82 ~~L~l~~~~~l~~l---~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~-~~~--~~~ 155 (227)
++|+++++ .+..+ +..+. .+++|++|+++++ .+..++ ...+..+++|++|+++++. +... +.. ...
T Consensus 353 ~~L~l~~n-~l~~~~~~~~~~~---~l~~L~~L~l~~n-~l~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l 424 (606)
T 3t6q_A 353 RELDLSHD-DIETSDCCNLQLR---NLSHLQSLNLSYN-EPLSLK--TEAFKECPQLELLDLAFTR-LKVKDAQSPFQNL 424 (606)
T ss_dssp CEEECCSS-CCCEEEESTTTTT---TCTTCCEEECCSC-SCEEEC--TTTTTTCTTCSEEECTTCC-EECCTTCCTTTTC
T ss_pred CEEECCCC-ccccccCcchhcc---cCCCCCEEECCCC-cCCcCC--HHHhcCCccCCeEECCCCc-CCCcccchhhhCc
Confidence 77777665 33333 33332 5667777777764 333332 2566667777777777643 3322 221 345
Q ss_pred CccceeeecCCCCCCCCCC-CCCCCCCcEEeecCCc
Q 045261 156 SSLLDLCIFNCPNLTSLPK-VGLPSSLLELTIFDCP 190 (227)
Q Consensus 156 ~~L~~l~i~~c~~l~~~~~-~~~~~~L~~L~l~~c~ 190 (227)
++|++|++++|..-...+. ...+++|++|++++|.
T Consensus 425 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 6677777776654333332 2335677777777664
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.7e-15 Score=117.41 Aligned_cols=173 Identities=23% Similarity=0.178 Sum_probs=93.5
Q ss_pred CCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCC--C-CCCCCcceeEeccCcccccccchhcccccCCcc
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPE--E-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~--~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L 81 (227)
++|+.|++++| .+..+|..+..+++|++|+++++. +..++. . ..+++|+.|++ +++ .+. ...+..+..+++|
T Consensus 78 ~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l-~~n-~l~-~~~~~~~~~l~~L 152 (306)
T 2z66_A 78 TSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDI-SHT-HTR-VAFNGIFNGLSSL 152 (306)
T ss_dssp SCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEEC-TTS-CCE-ECSTTTTTTCTTC
T ss_pred cccCEEECCCC-ccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEEC-CCC-cCC-ccchhhcccCcCC
Confidence 34444444443 233444445556666666665542 444432 1 45566666666 543 232 2233345566666
Q ss_pred ceEEeccCCCCCc--cCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCc
Q 045261 82 RWLLIERCDESEC--FPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSS 157 (227)
Q Consensus 82 ~~L~l~~~~~l~~--l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~ 157 (227)
++|+++++ .+.. +|..+. .+++|++|+++++ .+..++ ...+..+++|++|++++ +.+..++.. ...++
T Consensus 153 ~~L~l~~n-~l~~~~~~~~~~---~l~~L~~L~Ls~n-~l~~~~--~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~ 224 (306)
T 2z66_A 153 EVLKMAGN-SFQENFLPDIFT---ELRNLTFLDLSQC-QLEQLS--PTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNS 224 (306)
T ss_dssp CEEECTTC-EEGGGEECSCCT---TCTTCCEEECTTS-CCCEEC--TTTTTTCTTCCEEECTT-SCCSBCCSGGGTTCTT
T ss_pred CEEECCCC-ccccccchhHHh---hCcCCCEEECCCC-CcCCcC--HHHhcCCCCCCEEECCC-CccCccChhhccCccc
Confidence 66666665 3332 444443 5667777777763 444442 25666777777777777 345555442 33567
Q ss_pred cceeeecCCCCCCCCCCC-CCC-CCCcEEeecCCc
Q 045261 158 LLDLCIFNCPNLTSLPKV-GLP-SSLLELTIFDCP 190 (227)
Q Consensus 158 L~~l~i~~c~~l~~~~~~-~~~-~~L~~L~l~~c~ 190 (227)
|++|+++++...+..+.. ..+ ++|++|++++++
T Consensus 225 L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 777777776544433322 223 477777777654
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-14 Score=114.87 Aligned_cols=171 Identities=18% Similarity=0.237 Sum_probs=130.2
Q ss_pred CCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 4 PESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
+++|+.|++++|. ++.++ ..+.++++|++|+++++. +..++.. ..+++|++|++ .++ .+. .+.+..++.+++
T Consensus 51 l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l-~~n-~l~-~~~~~~~~~l~~ 125 (276)
T 2z62_A 51 FPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVA-VET-NLA-SLENFPIGHLKT 125 (276)
T ss_dssp CTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEEC-TTS-CCC-CSTTCCCTTCTT
T ss_pred ccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEEC-CCC-Ccc-ccCchhcccCCC
Confidence 6899999999974 55555 578999999999999975 6656543 78899999999 764 454 444546889999
Q ss_pred cceEEeccCCCCCc--cCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCcc----EEeecCCCCCccCCCC-C
Q 045261 81 LRWLLIERCDESEC--FPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLR----RLLIQDCPNLTSLPKV-G 153 (227)
Q Consensus 81 L~~L~l~~~~~l~~--l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~----~L~l~~c~~l~~~~~~-~ 153 (227)
|++|+++++ .+.. +|..+. .+++|++|++++ +.+..++ ...+..+++|+ +|++++ +.+..++.. .
T Consensus 126 L~~L~l~~n-~l~~~~l~~~~~---~l~~L~~L~Ls~-N~l~~~~--~~~~~~l~~L~~l~l~L~ls~-n~l~~~~~~~~ 197 (276)
T 2z62_A 126 LKELNVAHN-LIQSFKLPEYFS---NLTNLEHLDLSS-NKIQSIY--CTDLRVLHQMPLLNLSLDLSL-NPMNFIQPGAF 197 (276)
T ss_dssp CCEEECCSS-CCCCCCCCGGGG---GCTTCCEEECCS-SCCCEEC--GGGGHHHHTCTTCCEEEECCS-SCCCEECTTSS
T ss_pred CCEEECcCC-ccceecCchhhc---cCCCCCEEECCC-CCCCcCC--HHHhhhhhhccccceeeecCC-CcccccCcccc
Confidence 999999997 5555 566665 689999999998 4666655 35666666666 899998 567777654 2
Q ss_pred CCCccceeeecCCCCCCCCCCC--CCCCCCcEEeecC
Q 045261 154 LPSSLLDLCIFNCPNLTSLPKV--GLPSSLLELTIFD 188 (227)
Q Consensus 154 ~~~~L~~l~i~~c~~l~~~~~~--~~~~~L~~L~l~~ 188 (227)
...+|++|+++++. ++.++.. ..+++|++|++++
T Consensus 198 ~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 198 KEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp CSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCS
T ss_pred CCCcccEEECCCCc-eeecCHhHhcccccccEEEccC
Confidence 33489999999876 6677654 3478999999994
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.61 E-value=7.2e-16 Score=124.05 Aligned_cols=177 Identities=16% Similarity=0.139 Sum_probs=135.2
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCC-cc
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT-SL 81 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~-~L 81 (227)
+++|++|++++|...+.+|..+.++++|++|+++++.....+|.. ..+++|++|++ ++ +.+.+.+ +..+..++ +|
T Consensus 100 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~~-N~l~~~~-p~~l~~l~~~L 176 (313)
T 1ogq_A 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF-DG-NRISGAI-PDSYGSFSKLF 176 (313)
T ss_dssp CTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC-CS-SCCEEEC-CGGGGCCCTTC
T ss_pred CCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC-cC-CcccCcC-CHHHhhhhhcC
Confidence 689999999997655588999999999999999997533355655 78899999999 76 4554333 44677887 99
Q ss_pred ceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCcccee
Q 045261 82 RWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDL 161 (227)
Q Consensus 82 ~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l 161 (227)
++|+++++.....+|..+. .+. |+.|+++++.-....+ ..+..+++|++|+++++.--..++.....++|++|
T Consensus 177 ~~L~L~~N~l~~~~~~~~~---~l~-L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L 249 (313)
T 1ogq_A 177 TSMTISRNRLTGKIPPTFA---NLN-LAFVDLSRNMLEGDAS---VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGL 249 (313)
T ss_dssp CEEECCSSEEEEECCGGGG---GCC-CSEEECCSSEEEECCG---GGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEE
T ss_pred cEEECcCCeeeccCChHHh---CCc-ccEEECcCCcccCcCC---HHHhcCCCCCEEECCCCceeeecCcccccCCCCEE
Confidence 9999999844446777665 444 9999999854333455 78889999999999996433344444567899999
Q ss_pred eecCCCCCCCCCCC-CCCCCCcEEeecCCc
Q 045261 162 CIFNCPNLTSLPKV-GLPSSLLELTIFDCP 190 (227)
Q Consensus 162 ~i~~c~~l~~~~~~-~~~~~L~~L~l~~c~ 190 (227)
+++++...+.+|.. ..+++|++|+++++.
T Consensus 250 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp ECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred ECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 99998765566653 457899999999885
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-13 Score=110.28 Aligned_cols=169 Identities=24% Similarity=0.217 Sum_probs=135.0
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCcc
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L 81 (227)
+++++.+++++ ..++++|..+. ++++.|+++++. +..++.. ..+++|+.|++ ++ +.++ .+.. .+.+++|
T Consensus 9 l~~l~~l~~~~-~~l~~ip~~~~--~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L-~~-n~l~-~~~~--~~~l~~L 79 (290)
T 1p9a_G 9 VASHLEVNCDK-RNLTALPPDLP--KDTTILHLSENL-LYTFSLATLMPYTRLTQLNL-DR-AELT-KLQV--DGTLPVL 79 (290)
T ss_dssp STTCCEEECTT-SCCSSCCSCCC--TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEEC-TT-SCCC-EEEC--CSCCTTC
T ss_pred cCCccEEECCC-CCCCcCCCCCC--CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEEC-CC-CccC-cccC--CCCCCcC
Confidence 67899999998 56888887654 789999999975 5555433 78899999999 76 4554 3332 3789999
Q ss_pred ceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCccc
Q 045261 82 RWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLL 159 (227)
Q Consensus 82 ~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~ 159 (227)
++|+++++ .+..+|..+. .+++|++|++++ +.+..++ ...+.++++|++|++++ +.+..++.. ...++|+
T Consensus 80 ~~L~Ls~N-~l~~l~~~~~---~l~~L~~L~l~~-N~l~~l~--~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 80 GTLDLSHN-QLQSLPLLGQ---TLPALTVLDVSF-NRLTSLP--LGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp CEEECCSS-CCSSCCCCTT---TCTTCCEEECCS-SCCCCCC--SSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCC
T ss_pred CEEECCCC-cCCcCchhhc---cCCCCCEEECCC-CcCcccC--HHHHcCCCCCCEEECCC-CCCCccChhhcccccCCC
Confidence 99999997 7888988765 789999999998 6777776 46789999999999999 578888765 3467999
Q ss_pred eeeecCCCCCCCCCCCC--CCCCCcEEeecCCc
Q 045261 160 DLCIFNCPNLTSLPKVG--LPSSLLELTIFDCP 190 (227)
Q Consensus 160 ~l~i~~c~~l~~~~~~~--~~~~L~~L~l~~c~ 190 (227)
+|+++++ .++.++... .+++|++|+++++.
T Consensus 152 ~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 152 KLSLANN-NLTELPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp EEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCC-cCCccCHHHhcCcCCCCEEECCCCc
Confidence 9999986 467777643 47899999999874
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.61 E-value=8.7e-14 Score=108.31 Aligned_cols=170 Identities=24% Similarity=0.301 Sum_probs=128.7
Q ss_pred CccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 6 SISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 6 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+.+.+++++ ..++.+|..+. ++++.|+++++. +..++.. ..+++|++|++ ++ +.+. .+.+..+..+++|++
T Consensus 15 ~~~~l~~~~-~~l~~~p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L-~~-n~l~-~~~~~~~~~l~~L~~ 87 (251)
T 3m19_A 15 GKKEVDCQG-KSLDSVPSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNL-DY-NQLQ-TLSAGVFDDLTELGT 87 (251)
T ss_dssp GGTEEECTT-CCCSSCCSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEEC-TT-SCCC-CCCTTTTTTCTTCCE
T ss_pred CCeEEecCC-CCccccCCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEEC-CC-CcCC-ccCHhHhccCCcCCE
Confidence 467788888 46778887654 689999999875 5555543 77899999999 76 5565 445556788999999
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCcccee
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLLDL 161 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l 161 (227)
|+++++ .+..++.... ..+++|++|++++ +.+..++ ...+..+++|++|++++ +.+..++.. ...++|++|
T Consensus 88 L~L~~n-~l~~~~~~~~--~~l~~L~~L~L~~-N~l~~~~--~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 88 LGLANN-QLASLPLGVF--DHLTQLDKLYLGG-NQLKSLP--SGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp EECTTS-CCCCCCTTTT--TTCTTCCEEECCS-SCCCCCC--TTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred EECCCC-cccccChhHh--cccCCCCEEEcCC-CcCCCcC--hhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEE
Confidence 999987 6667765432 2678999999998 5777777 45578899999999999 478887763 456789999
Q ss_pred eecCCCCCCCCCCC--CCCCCCcEEeecCCc
Q 045261 162 CIFNCPNLTSLPKV--GLPSSLLELTIFDCP 190 (227)
Q Consensus 162 ~i~~c~~l~~~~~~--~~~~~L~~L~l~~c~ 190 (227)
+++++. ++.++.. ..+++|++|++++++
T Consensus 161 ~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 161 SLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp ECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred ECCCCc-CCccCHHHHhCCCCCCEEEeeCCc
Confidence 999864 5556543 347899999999865
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-14 Score=116.75 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=32.1
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCccc
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKM 65 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~ 65 (227)
+++|+.|++++| .++.++ .+.++++|++|+++++. +..++....+++|+.|++ ++|..
T Consensus 87 l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l~~n~-i~~~~~~~~l~~L~~L~l-~~n~~ 144 (347)
T 4fmz_A 87 LVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNEDN-ISDISPLANLTKMYSLNL-GANHN 144 (347)
T ss_dssp CTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECTTSC-CCCCGGGTTCTTCCEEEC-TTCTT
T ss_pred CCcCCEEEccCC-cccCch-HHcCCCcCCEEECcCCc-ccCchhhccCCceeEEEC-CCCCC
Confidence 466677777765 344443 35666666666666653 444433345555555555 55433
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-14 Score=118.07 Aligned_cols=173 Identities=16% Similarity=0.164 Sum_probs=96.7
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLR 82 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~ 82 (227)
-+++|++|++++|. +..++. +..+++|++|++++|.....++....+++|+.|++ .+|. +. ... .+..+++|+
T Consensus 108 ~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l-~~~~-~~-~~~--~~~~l~~L~ 180 (347)
T 4fmz_A 108 NLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTV-TESK-VK-DVT--PIANLTDLY 180 (347)
T ss_dssp TCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEEC-CSSC-CC-CCG--GGGGCTTCS
T ss_pred CCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEe-cCCC-cC-Cch--hhccCCCCC
Confidence 35778888888853 555555 77778888888887765655554466677777777 5543 22 111 155666666
Q ss_pred eEEeccCCCCCccCccCc------------------CCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCC
Q 045261 83 WLLIERCDESECFPDGMM------------------GMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCP 144 (227)
Q Consensus 83 ~L~l~~~~~l~~l~~~~~------------------~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~ 144 (227)
+|++++| .+..++.... ....+++|++|++++ +.+..++ . +..+++|++|++++|
T Consensus 181 ~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~-n~l~~~~---~-~~~l~~L~~L~l~~n- 253 (347)
T 4fmz_A 181 SLSLNYN-QIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGN-NKITDLS---P-LANLSQLTWLEIGTN- 253 (347)
T ss_dssp EEECTTS-CCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCS-SCCCCCG---G-GTTCTTCCEEECCSS-
T ss_pred EEEccCC-cccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccC-CccCCCc---c-hhcCCCCCEEECCCC-
Confidence 6666665 3444332110 001345555555555 3344443 2 555666666666663
Q ss_pred CCccCCCCCCCCccceeeecCCCCCCCCCCCCCCCCCcEEeecCCc
Q 045261 145 NLTSLPKVGLPSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCP 190 (227)
Q Consensus 145 ~l~~~~~~~~~~~L~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~c~ 190 (227)
.+..++.....++|++|++++| .++.++....+++|++|++++|.
T Consensus 254 ~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 254 QISDINAVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp CCCCCGGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC
T ss_pred ccCCChhHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCc
Confidence 4444443344556666666665 34444433345666666666664
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-14 Score=118.23 Aligned_cols=81 Identities=19% Similarity=0.192 Sum_probs=39.4
Q ss_pred CCCccEEEeccCCCCCcC-CcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 4 PESISSVEIRRCEKLGAL-PSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
+++|++|++++|. ++.+ |..++++++|++|+++++. +..++.. ..+++|++|++ +++ .+. .+.+..++.+++
T Consensus 92 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L-~~n-~l~-~~~~~~~~~l~~ 166 (390)
T 3o6n_A 92 AHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSM-SNN-NLE-RIEDDTFQATTS 166 (390)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC-CSS-CCC-BCCTTTTSSCTT
T ss_pred CCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEEC-CCC-ccC-ccChhhccCCCC
Confidence 3455555555543 2232 3344555555555555542 4444443 34555666665 442 232 223333555555
Q ss_pred cceEEeccC
Q 045261 81 LRWLLIERC 89 (227)
Q Consensus 81 L~~L~l~~~ 89 (227)
|++|+++++
T Consensus 167 L~~L~l~~n 175 (390)
T 3o6n_A 167 LQNLQLSSN 175 (390)
T ss_dssp CCEEECCSS
T ss_pred CCEEECCCC
Confidence 555555554
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=8.7e-15 Score=119.48 Aligned_cols=175 Identities=21% Similarity=0.227 Sum_probs=129.4
Q ss_pred CCCCccEEEeccCCCCCcCCc-ccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 3 LPESISSVEIRRCEKLGALPS-DMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
+.++|+.|+++++. ++.++. .+.++++|++|+++++. +..++.. ..+++|++|++ ++ +.++ .+++..++.++
T Consensus 50 ~~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L-s~-n~l~-~~~~~~~~~l~ 124 (353)
T 2z80_A 50 LTEAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDL-SY-NYLS-NLSSSWFKPLS 124 (353)
T ss_dssp CCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEC-CS-SCCS-SCCHHHHTTCT
T ss_pred ccccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEEC-CC-CcCC-cCCHhHhCCCc
Confidence 56789999999964 666664 78999999999999874 6666543 77899999999 66 4554 44554578899
Q ss_pred ccceEEeccCCCCCccCc--cCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccC-CCC-CCC
Q 045261 80 SLRWLLIERCDESECFPD--GMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSL-PKV-GLP 155 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~~--~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~-~~~-~~~ 155 (227)
+|++|+++++ .++.+|. .+. .+++|++|++++++.+..++ ...+..+++|++|+++++. +..+ +.. ...
T Consensus 125 ~L~~L~L~~n-~l~~l~~~~~~~---~l~~L~~L~l~~n~~~~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l 197 (353)
T 2z80_A 125 SLTFLNLLGN-PYKTLGETSLFS---HLTKLQILRVGNMDTFTKIQ--RKDFAGLTFLEELEIDASD-LQSYEPKSLKSI 197 (353)
T ss_dssp TCSEEECTTC-CCSSSCSSCSCT---TCTTCCEEEEEESSSCCEEC--TTTTTTCCEEEEEEEEETT-CCEECTTTTTTC
T ss_pred cCCEEECCCC-CCcccCchhhhc---cCCCCcEEECCCCccccccC--HHHccCCCCCCEEECCCCC-cCccCHHHHhcc
Confidence 9999999987 6777876 343 68899999999976777775 4678889999999999854 5444 332 446
Q ss_pred CccceeeecCCCCCCCCCCC--CCCCCCcEEeecCCc
Q 045261 156 SSLLDLCIFNCPNLTSLPKV--GLPSSLLELTIFDCP 190 (227)
Q Consensus 156 ~~L~~l~i~~c~~l~~~~~~--~~~~~L~~L~l~~c~ 190 (227)
++|++|+++++. ++.++.. ..+++|++|+++++.
T Consensus 198 ~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 198 QNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp SEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCB
T ss_pred ccCCeecCCCCc-cccchhhhhhhcccccEEECCCCc
Confidence 688888888765 3444432 125778888887764
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.9e-15 Score=128.71 Aligned_cols=173 Identities=15% Similarity=0.202 Sum_probs=110.4
Q ss_pred CCCccEEEeccCCCCCc------------------CCcccC--CCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccC
Q 045261 4 PESISSVEIRRCEKLGA------------------LPSDMH--KLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGED 62 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~------------------lp~~~~--~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~ 62 (227)
+++|+.|++++|. +.. +|+.++ ++++|++|++++|.....+|.. ..+++|+.|++ ++
T Consensus 205 l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L-s~ 282 (636)
T 4eco_A 205 LTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV-AC 282 (636)
T ss_dssp CTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC-TT
T ss_pred ccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC-cC
Confidence 6789999999976 554 898888 9999999999998777777876 78899999999 77
Q ss_pred cccccccchhcccccC------CccceEEeccCCCCCccCc--cCcCCCCCCccceEEEecCCCcc-ccCCCCCCccCCC
Q 045261 63 MKMLYKGLVQWGLHRL------TSLRWLLIERCDESECFPD--GMMGMTLPTSLVHLNIVEFQKLK-NLSSSSSGFHSLT 133 (227)
Q Consensus 63 ~~~l~~~~~~~~~~~l------~~L~~L~l~~~~~l~~l~~--~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~l~~l~ 133 (227)
+..+++...|..++.+ ++|++|+++++ .+..+|. .+. .+++|+.|+++++ .+. .+| .+..++
T Consensus 283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~---~l~~L~~L~L~~N-~l~g~ip----~~~~l~ 353 (636)
T 4eco_A 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQ---KMKKLGMLECLYN-QLEGKLP----AFGSEI 353 (636)
T ss_dssp CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHT---TCTTCCEEECCSC-CCEEECC----CCEEEE
T ss_pred CCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhc---cCCCCCEEeCcCC-cCccchh----hhCCCC
Confidence 5535531223345554 78888888887 5557777 554 6677778777774 343 554 344555
Q ss_pred CccEEeecCCCCCccCCCC-CCCCc-cceeeecCCCCCCCCCCC-CC--CCCCcEEeecCC
Q 045261 134 SLRRLLIQDCPNLTSLPKV-GLPSS-LLDLCIFNCPNLTSLPKV-GL--PSSLLELTIFDC 189 (227)
Q Consensus 134 ~L~~L~l~~c~~l~~~~~~-~~~~~-L~~l~i~~c~~l~~~~~~-~~--~~~L~~L~l~~c 189 (227)
+|++|+++++ .+..+|.. ...++ |++|+++++. ++.+|.. .. +++|++|++++|
T Consensus 354 ~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N 412 (636)
T 4eco_A 354 KLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYN 412 (636)
T ss_dssp EESEEECCSS-EEEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSS
T ss_pred CCCEEECCCC-ccccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCC
Confidence 5555555552 34444442 22334 5555555544 2244432 11 124555555544
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.59 E-value=7.6e-14 Score=108.66 Aligned_cols=155 Identities=19% Similarity=0.273 Sum_probs=123.5
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
+.++++.|+++++...+..+..+.++++|++|+++++. +..++.. ..+++|++|++ ++ +.+. .+++..+..+++
T Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L-~~-n~l~-~~~~~~~~~l~~ 108 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGL-AN-NQLA-SLPLGVFDHLTQ 108 (251)
T ss_dssp CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEEC-TT-SCCC-CCCTTTTTTCTT
T ss_pred CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEEC-CC-Cccc-ccChhHhcccCC
Confidence 46789999999975444344678999999999999974 6666654 77899999999 66 5565 555666889999
Q ss_pred cceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCcc
Q 045261 81 LRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSL 158 (227)
Q Consensus 81 L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L 158 (227)
|++|+++++ .++.++.... ..+++|+.|++++ +.+..++ ...+..+++|++|++++ +.+..++.. ...++|
T Consensus 109 L~~L~L~~N-~l~~~~~~~~--~~l~~L~~L~Ls~-N~l~~~~--~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L 181 (251)
T 3m19_A 109 LDKLYLGGN-QLKSLPSGVF--DRLTKLKELRLNT-NQLQSIP--AGAFDKLTNLQTLSLST-NQLQSVPHGAFDRLGKL 181 (251)
T ss_dssp CCEEECCSS-CCCCCCTTTT--TTCTTCCEEECCS-SCCCCCC--TTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTC
T ss_pred CCEEEcCCC-cCCCcChhHh--ccCCcccEEECcC-CcCCccC--HHHcCcCcCCCEEECCC-CcCCccCHHHHhCCCCC
Confidence 999999997 7778876542 2689999999998 5788887 45788999999999999 567777764 346789
Q ss_pred ceeeecCCCC
Q 045261 159 LDLCIFNCPN 168 (227)
Q Consensus 159 ~~l~i~~c~~ 168 (227)
++|++++++.
T Consensus 182 ~~L~l~~N~~ 191 (251)
T 3m19_A 182 QTITLFGNQF 191 (251)
T ss_dssp CEEECCSCCB
T ss_pred CEEEeeCCce
Confidence 9999998764
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-14 Score=114.32 Aligned_cols=175 Identities=21% Similarity=0.195 Sum_probs=88.6
Q ss_pred CCCCccEEEeccCCCCCcCCcc-cCCCCCcceEeecCCCCCccc---CCC-CCCCCcceeEeccCcccccccchhccccc
Q 045261 3 LPESISSVEIRRCEKLGALPSD-MHKLNSLQDLDIRECPSIVSF---PEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHR 77 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~~---~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~ 77 (227)
++++|+.|+++++ .++.+|.. +.++++|++|+++++. +..+ +.. ..+++|++|++ +++ .+. .+ +..+..
T Consensus 26 ~~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L-s~n-~i~-~l-~~~~~~ 99 (306)
T 2z66_A 26 IPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDL-SFN-GVI-TM-SSNFLG 99 (306)
T ss_dssp CCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEEC-CSC-SEE-EE-EEEEET
T ss_pred CCCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEEC-CCC-ccc-cC-hhhcCC
Confidence 5578999999986 46677754 6888889999988864 4332 111 34566666666 543 222 12 122444
Q ss_pred CCccceEEeccCCCCCccCc--cCcC---------------------CCCCCccceEEEecCCCccc--cCCCCCCccCC
Q 045261 78 LTSLRWLLIERCDESECFPD--GMMG---------------------MTLPTSLVHLNIVEFQKLKN--LSSSSSGFHSL 132 (227)
Q Consensus 78 l~~L~~L~l~~~~~l~~l~~--~~~~---------------------~~~~~~L~~L~l~~~~~l~~--l~~~~~~l~~l 132 (227)
+++|++|+++++ .+..++. .+.. ...+++|++|+++++ .+.. +| ..+..+
T Consensus 100 l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~---~~~~~l 174 (306)
T 2z66_A 100 LEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLP---DIFTEL 174 (306)
T ss_dssp CTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC-EEGGGEEC---SCCTTC
T ss_pred CCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC-ccccccch---hHHhhC
Confidence 555555555543 3333332 1210 013445555555442 2222 33 445555
Q ss_pred CCccEEeecCCCCCccCCCC--CCCCccceeeecCCCCCCCCCC--CCCCCCCcEEeecCCc
Q 045261 133 TSLRRLLIQDCPNLTSLPKV--GLPSSLLDLCIFNCPNLTSLPK--VGLPSSLLELTIFDCP 190 (227)
Q Consensus 133 ~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l~i~~c~~l~~~~~--~~~~~~L~~L~l~~c~ 190 (227)
++|++|+++++ .+..++.. ...++|++|+++++. ++.++. ...+++|++|+++++.
T Consensus 175 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 175 RNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSC
T ss_pred cCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCC
Confidence 55555555553 33333221 234455666665543 333332 1234566666666553
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.1e-14 Score=124.09 Aligned_cols=81 Identities=19% Similarity=0.192 Sum_probs=39.2
Q ss_pred CCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 4 PESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
+++|+.|++++|. ++.++ ..++++++|++|+++++. +..+|.. ..+++|+.|++ +++ .+. .+.+..++.+++
T Consensus 98 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L-s~N-~l~-~~~~~~~~~l~~ 172 (597)
T 3oja_B 98 AHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSM-SNN-NLE-RIEDDTFQATTS 172 (597)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC-CSS-CCC-BCCTTTTTTCTT
T ss_pred CCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEe-eCC-cCC-CCChhhhhcCCc
Confidence 3455555555543 23332 334555555555555542 4444443 34555666655 442 332 223334555555
Q ss_pred cceEEeccC
Q 045261 81 LRWLLIERC 89 (227)
Q Consensus 81 L~~L~l~~~ 89 (227)
|++|+++++
T Consensus 173 L~~L~L~~N 181 (597)
T 3oja_B 173 LQNLQLSSN 181 (597)
T ss_dssp CCEEECTTS
T ss_pred CcEEECcCC
Confidence 555555554
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-14 Score=117.57 Aligned_cols=150 Identities=17% Similarity=0.154 Sum_probs=92.9
Q ss_pred CCCccEEEeccCCCCCcC-CcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchh-cccccCC
Q 045261 4 PESISSVEIRRCEKLGAL-PSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQ-WGLHRLT 79 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~-~~~~~l~ 79 (227)
+++|+.|++++|. ++.+ +..+.++++|++|+++++. +..++.. ..+++|++|++ ++ +.+. .++. ..+..++
T Consensus 75 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L-~~-n~l~-~l~~~~~~~~l~ 149 (353)
T 2z80_A 75 CVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNL-LG-NPYK-TLGETSLFSHLT 149 (353)
T ss_dssp CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEEC-TT-CCCS-SSCSSCSCTTCT
T ss_pred CCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEEC-CC-CCCc-ccCchhhhccCC
Confidence 5788888888864 4444 4567888888888888763 5556553 56788888888 65 3444 3333 3567788
Q ss_pred ccceEEeccCCCCCccCc-cCcCCCCCCccceEEEecCCCcccc-CCCCCCccCCCCccEEeecCCCCCccCCCC--CCC
Q 045261 80 SLRWLLIERCDESECFPD-GMMGMTLPTSLVHLNIVEFQKLKNL-SSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLP 155 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~~-~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~ 155 (227)
+|++|+++++..+..++. .+. .+++|++|+++++. +..+ | ..+..+++|++|+++++ .+..++.. ...
T Consensus 150 ~L~~L~l~~n~~~~~~~~~~~~---~l~~L~~L~l~~n~-l~~~~~---~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~ 221 (353)
T 2z80_A 150 KLQILRVGNMDTFTKIQRKDFA---GLTFLEELEIDASD-LQSYEP---KSLKSIQNVSHLILHMK-QHILLLEIFVDVT 221 (353)
T ss_dssp TCCEEEEEESSSCCEECTTTTT---TCCEEEEEEEEETT-CCEECT---TTTTTCSEEEEEEEECS-CSTTHHHHHHHHT
T ss_pred CCcEEECCCCccccccCHHHcc---CCCCCCEEECCCCC-cCccCH---HHHhccccCCeecCCCC-ccccchhhhhhhc
Confidence 888888887755666543 332 56778888887743 4443 4 66666677777776663 33333321 113
Q ss_pred CccceeeecCC
Q 045261 156 SSLLDLCIFNC 166 (227)
Q Consensus 156 ~~L~~l~i~~c 166 (227)
++|++|+++++
T Consensus 222 ~~L~~L~L~~n 232 (353)
T 2z80_A 222 SSVECLELRDT 232 (353)
T ss_dssp TTEEEEEEESC
T ss_pred ccccEEECCCC
Confidence 44445544443
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-13 Score=119.59 Aligned_cols=173 Identities=16% Similarity=0.121 Sum_probs=133.1
Q ss_pred CccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 6 SISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 6 ~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+|+.|+++++. ++.++ ..++++++|++|+++++. +..+|.. ..+++|++|++ +++ .+. ...+..+..+++|++
T Consensus 255 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l-~~n-~l~-~~~~~~~~~l~~L~~ 329 (606)
T 3t6q_A 255 SVESINLQKHY-FFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVL-SAN-KFE-NLCQISASNFPSLTH 329 (606)
T ss_dssp EEEEEECTTCC-CSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEEC-TTC-CCS-BGGGGCGGGCTTCSE
T ss_pred ceeEEEeecCc-cCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEEC-ccC-CcC-cCchhhhhccCcCCE
Confidence 78999999964 55555 568999999999999974 7788877 78899999999 774 454 444557889999999
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCcccc---CCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCcc
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNL---SSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSL 158 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l---~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L 158 (227)
|+++++.....++.... ..+++|++|+++++ .+..+ + ..+..+++|++|+++++. +..++.. ...++|
T Consensus 330 L~l~~n~~~~~~~~~~~--~~l~~L~~L~l~~n-~l~~~~~~~---~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L 402 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCL--ENLENLRELDLSHD-DIETSDCCN---LQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQL 402 (606)
T ss_dssp EECCSCSSCCBCCSSTT--TTCTTCCEEECCSS-CCCEEEEST---TTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTC
T ss_pred EECCCCCcccccchhhh--hccCcCCEEECCCC-ccccccCcc---hhcccCCCCCEEECCCCc-CCcCCHHHhcCCccC
Confidence 99999855556766532 27899999999985 44443 5 678899999999999964 5444332 456899
Q ss_pred ceeeecCCCCCCCCCC--CCCCCCCcEEeecCCc
Q 045261 159 LDLCIFNCPNLTSLPK--VGLPSSLLELTIFDCP 190 (227)
Q Consensus 159 ~~l~i~~c~~l~~~~~--~~~~~~L~~L~l~~c~ 190 (227)
++|+++++......+. ...+++|++|++++|.
T Consensus 403 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp SEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred CeEECCCCcCCCcccchhhhCcccCCEEECCCCc
Confidence 9999999875544443 3457999999999875
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-14 Score=115.57 Aligned_cols=167 Identities=17% Similarity=0.222 Sum_probs=134.6
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+++|+.|++++| .+..++ .+..+++|++|++++|. +..++....+++|+.|++ +++. +. .+ + .+..+++|++
T Consensus 40 l~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~L-~~n~-l~-~~-~-~~~~l~~L~~ 111 (308)
T 1h6u_A 40 LDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDNQ-ITDLAPLKNLTKITELEL-SGNP-LK-NV-S-AIAGLQSIKT 111 (308)
T ss_dssp HHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCCSCCEEEC-CSCC-CS-CC-G-GGTTCTTCCE
T ss_pred cCCcCEEEeeCC-CccCch-hhhccCCCCEEEccCCc-CCCChhHccCCCCCEEEc-cCCc-CC-Cc-h-hhcCCCCCCE
Confidence 468999999996 567777 58899999999999974 666665678899999999 7754 54 32 2 5888999999
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeee
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCI 163 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i 163 (227)
|+++++ .+..++. +. .+++|++|++++ +.+..++ . +..+++|++|++++| .+..++.....++|++|++
T Consensus 112 L~l~~n-~l~~~~~-l~---~l~~L~~L~l~~-n~l~~~~---~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l 180 (308)
T 1h6u_A 112 LDLTST-QITDVTP-LA---GLSNLQVLYLDL-NQITNIS---P-LAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKA 180 (308)
T ss_dssp EECTTS-CCCCCGG-GT---TCTTCCEEECCS-SCCCCCG---G-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEEC
T ss_pred EECCCC-CCCCchh-hc---CCCCCCEEECCC-CccCcCc---c-ccCCCCccEEEccCC-cCCCChhhcCCCCCCEEEC
Confidence 999998 6777765 33 789999999998 5777776 3 889999999999995 6777766556789999999
Q ss_pred cCCCCCCCCCCCCCCCCCcEEeecCCc
Q 045261 164 FNCPNLTSLPKVGLPSSLLELTIFDCP 190 (227)
Q Consensus 164 ~~c~~l~~~~~~~~~~~L~~L~l~~c~ 190 (227)
+++. ++.++....+++|++|++++|.
T Consensus 181 ~~n~-l~~~~~l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 181 DDNK-ISDISPLASLPNLIEVHLKNNQ 206 (308)
T ss_dssp CSSC-CCCCGGGGGCTTCCEEECTTSC
T ss_pred CCCc-cCcChhhcCCCCCCEEEccCCc
Confidence 9864 5666655567899999999874
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.3e-15 Score=109.77 Aligned_cols=151 Identities=15% Similarity=0.129 Sum_probs=83.5
Q ss_pred CCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCc-cCccCcCCCC
Q 045261 26 HKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESEC-FPDGMMGMTL 104 (227)
Q Consensus 26 ~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~~~~ 104 (227)
..+++|++|+++++. +..++....+++|+.|++ ++| .+. .. ..+..+++|++|+++++ .+.. .+..+. .
T Consensus 41 ~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l-~~n-~~~-~~--~~l~~l~~L~~L~l~~n-~l~~~~~~~l~---~ 110 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-VTDLTGIEYAHNIKDLTI-NNI-HAT-NY--NPISGLSNLERLRIMGK-DVTSDKIPNLS---G 110 (197)
T ss_dssp HHHHTCCEEEEESSC-CSCCTTGGGCTTCSEEEE-ESC-CCS-CC--GGGTTCTTCCEEEEECT-TCBGGGSCCCT---T
T ss_pred hhcCCccEEeccCCC-ccChHHHhcCCCCCEEEc-cCC-CCC-cc--hhhhcCCCCCEEEeECC-ccCcccChhhc---C
Confidence 445566666666643 445553355666666666 554 332 11 13556666666666665 3332 344443 4
Q ss_pred CCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeeecCCCCCCCCCCCCCCCCCcEE
Q 045261 105 PTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIFNCPNLTSLPKVGLPSSLLEL 184 (227)
Q Consensus 105 ~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i~~c~~l~~~~~~~~~~~L~~L 184 (227)
+++|++|+++++.-....+ ..+..+++|++|++++|..++.++....+++|++|++++|. +++++....+++|++|
T Consensus 111 l~~L~~L~Ls~n~i~~~~~---~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L 186 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSIL---TKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQL 186 (197)
T ss_dssp CTTCCEEECCSSBCBGGGH---HHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCCTTGGGCSSCCEE
T ss_pred CCCCCEEEecCCccCcHhH---HHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC-CcChHHhccCCCCCEE
Confidence 5666666666633222233 45566666666666665445555543445666666666654 4444443446777777
Q ss_pred eecCCc
Q 045261 185 TIFDCP 190 (227)
Q Consensus 185 ~l~~c~ 190 (227)
++++.+
T Consensus 187 ~l~~N~ 192 (197)
T 4ezg_A 187 YAFSQT 192 (197)
T ss_dssp EECBC-
T ss_pred EeeCcc
Confidence 777643
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=9.4e-14 Score=112.27 Aligned_cols=171 Identities=15% Similarity=0.255 Sum_probs=95.9
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhccccc------
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHR------ 77 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~------ 77 (227)
+++|++|++++|...+..|..+.++++|++|+++++. +..+|.. ..++|++|++ +++ .+. .+.+..+..
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~-~~~~L~~L~l-~~n-~l~-~~~~~~~~~l~~L~~ 149 (330)
T 1xku_A 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEK-MPKTLQELRV-HEN-EIT-KVRKSVFNGLNQMIV 149 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSS-CCTTCCEEEC-CSS-CCC-BBCHHHHTTCTTCCE
T ss_pred CCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChh-hcccccEEEC-CCC-ccc-ccCHhHhcCCccccE
Confidence 4566666666643322235566666666666666643 4444432 2244555554 332 222 122222344
Q ss_pred --------------------CCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccE
Q 045261 78 --------------------LTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRR 137 (227)
Q Consensus 78 --------------------l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~ 137 (227)
+++|++|+++++ .+..+|... +++|++|+++++ .+..++ ...+..+++|++
T Consensus 150 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~-----~~~L~~L~l~~n-~l~~~~--~~~~~~l~~L~~ 220 (330)
T 1xku_A 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGL-----PPSLTELHLDGN-KITKVD--AASLKGLNNLAK 220 (330)
T ss_dssp EECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSC-----CTTCSEEECTTS-CCCEEC--TGGGTTCTTCCE
T ss_pred EECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCccc-----cccCCEEECCCC-cCCccC--HHHhcCCCCCCE
Confidence 444555555443 344444332 356777777663 444443 266778888888
Q ss_pred EeecCCCCCccCCCC--CCCCccceeeecCCCCCCCCCCC-CCCCCCcEEeecCCc
Q 045261 138 LLIQDCPNLTSLPKV--GLPSSLLDLCIFNCPNLTSLPKV-GLPSSLLELTIFDCP 190 (227)
Q Consensus 138 L~l~~c~~l~~~~~~--~~~~~L~~l~i~~c~~l~~~~~~-~~~~~L~~L~l~~c~ 190 (227)
|+++++ .+..++.. ...++|++|+++++. ++.+|.. ..+++|++|+++++.
T Consensus 221 L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 221 LGLSFN-SISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp EECCSS-CCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSC
T ss_pred EECCCC-cCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCc
Confidence 888884 45555442 345688888888864 5566653 456888888888764
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.3e-14 Score=129.24 Aligned_cols=174 Identities=16% Similarity=0.182 Sum_probs=106.9
Q ss_pred CCCccEEEeccCCCCC-----------------cCCcccC--CCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCc
Q 045261 4 PESISSVEIRRCEKLG-----------------ALPSDMH--KLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDM 63 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~-----------------~lp~~~~--~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~ 63 (227)
+++|+.|++++|...+ .+|..++ ++++|++|++++|.....+|.. ..+++|+.|++ +++
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L-s~N 525 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI-ACN 525 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC-TTC
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC-cCC
Confidence 5678888888865433 1787777 8888888888887766677755 67788888888 665
Q ss_pred ccccc-cchhccccc-------CCccceEEeccCCCCCccCc--cCcCCCCCCccceEEEecCCCccccCCCCCCccCCC
Q 045261 64 KMLYK-GLVQWGLHR-------LTSLRWLLIERCDESECFPD--GMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLT 133 (227)
Q Consensus 64 ~~l~~-~~~~~~~~~-------l~~L~~L~l~~~~~l~~l~~--~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~ 133 (227)
..+++ .+ |..++. +++|++|+++++ .+..+|. .+. .+++|+.|+++++ .+..+| .+..++
T Consensus 526 ~~lsg~~i-P~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~---~L~~L~~L~Ls~N-~l~~lp----~~~~L~ 595 (876)
T 4ecn_A 526 RGISAAQL-KADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQ---KMVKLGLLDCVHN-KVRHLE----AFGTNV 595 (876)
T ss_dssp TTSCHHHH-HHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHT---TCTTCCEEECTTS-CCCBCC----CCCTTS
T ss_pred CCcccccc-hHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhh---cCCCCCEEECCCC-Ccccch----hhcCCC
Confidence 43543 22 222333 347777777776 4556776 554 5667777777763 444554 456666
Q ss_pred CccEEeecCCCCCccCCCC-CCCCc-cceeeecCCCCCCCCCCC-CCC--CCCcEEeecCCc
Q 045261 134 SLRRLLIQDCPNLTSLPKV-GLPSS-LLDLCIFNCPNLTSLPKV-GLP--SSLLELTIFDCP 190 (227)
Q Consensus 134 ~L~~L~l~~c~~l~~~~~~-~~~~~-L~~l~i~~c~~l~~~~~~-~~~--~~L~~L~l~~c~ 190 (227)
+|++|+++++ .+..+|.. ...++ |++|+++++. ++.+|.. ... ++|+.|++++|.
T Consensus 596 ~L~~L~Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 596 KLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp EESEEECCSS-CCSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSC
T ss_pred cceEEECcCC-ccccchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCc
Confidence 7777777663 34455543 23344 6666666654 3355532 112 236666666553
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-14 Score=114.71 Aligned_cols=167 Identities=16% Similarity=0.213 Sum_probs=130.5
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+++|+.|++++| .+..++. +..+++|++|+++++. +..++....+++|+.|++ ++ +.+. .+ + .+..+++|++
T Consensus 45 l~~L~~L~l~~~-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~l~~l~~L~~L~l-~~-n~l~-~~-~-~l~~l~~L~~ 116 (291)
T 1h6t_A 45 LNSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGNK-LTDIKPLANLKNLGWLFL-DE-NKVK-DL-S-SLKDLKKLKS 116 (291)
T ss_dssp HHTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEEC-CS-SCCC-CG-G-GGTTCTTCCE
T ss_pred cCcccEEEccCC-CcccChh-HhcCCCCCEEEccCCc-cCCCcccccCCCCCEEEC-CC-CcCC-CC-h-hhccCCCCCE
Confidence 457899999996 5667754 8889999999999874 666655678899999999 76 4454 32 2 4888999999
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeee
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCI 163 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i 163 (227)
|++++| .+..++. +. .+++|+.|++++ +.+..+ ..+..+++|++|++++| .+..++.....++|++|++
T Consensus 117 L~L~~n-~i~~~~~-l~---~l~~L~~L~l~~-n~l~~~----~~l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~L 185 (291)
T 1h6t_A 117 LSLEHN-GISDING-LV---HLPQLESLYLGN-NKITDI----TVLSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYL 185 (291)
T ss_dssp EECTTS-CCCCCGG-GG---GCTTCCEEECCS-SCCCCC----GGGGGCTTCSEEECCSS-CCCCCGGGTTCTTCCEEEC
T ss_pred EECCCC-cCCCChh-hc---CCCCCCEEEccC-CcCCcc----hhhccCCCCCEEEccCC-ccccchhhcCCCccCEEEC
Confidence 999997 6777653 32 688999999998 566665 36788999999999995 6777765566789999999
Q ss_pred cCCCCCCCCCCCCCCCCCcEEeecCCc
Q 045261 164 FNCPNLTSLPKVGLPSSLLELTIFDCP 190 (227)
Q Consensus 164 ~~c~~l~~~~~~~~~~~L~~L~l~~c~ 190 (227)
+++ .++.++....+++|+.|++++++
T Consensus 186 ~~N-~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 186 SKN-HISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred CCC-cCCCChhhccCCCCCEEECcCCc
Confidence 986 46667665668899999999864
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-13 Score=116.13 Aligned_cols=130 Identities=17% Similarity=0.209 Sum_probs=80.6
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
+.++|++|+++++......|..+.++++|++|+++++.....++.. ..+++|++|++ +++ .+. ...+..++.+++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L-s~n-~l~-~~~~~~~~~l~~ 104 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL-DYN-QFL-QLETGAFNGLAN 104 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC-TTC-TTC-EECTTTTTTCTT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC-CCC-ccC-ccChhhccCccc
Confidence 3467888888886433334667788888888888877544455433 66778888888 663 343 333445777777
Q ss_pred cceEEeccCCCCCc-cCcc--CcCCCCCCccceEEEecCCCcccc-CCCCCC-ccCCCCccEEeecCC
Q 045261 81 LRWLLIERCDESEC-FPDG--MMGMTLPTSLVHLNIVEFQKLKNL-SSSSSG-FHSLTSLRRLLIQDC 143 (227)
Q Consensus 81 L~~L~l~~~~~l~~-l~~~--~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~-l~~l~~L~~L~l~~c 143 (227)
|++|++++| .+.. ++.. +. .+++|++|+++++ .+..+ | .. +.++++|++|+++++
T Consensus 105 L~~L~L~~n-~l~~~~~~~~~~~---~l~~L~~L~L~~n-~l~~~~~---~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 105 LEVLTLTQC-NLDGAVLSGNFFK---PLTSLEMLVLRDN-NIKKIQP---ASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp CCEEECTTS-CCBTHHHHSSTTT---TCTTCCEEECCSS-BCCSCCC---CGGGGGCTTCCEEECTTC
T ss_pred CCEEeCCCC-CCCccccCccccc---CcccCCEEECCCC-ccCccCc---ccccCCCCcccEEeCCCC
Confidence 778777776 3332 2222 32 5667777777763 34443 3 33 566777777777664
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-13 Score=108.73 Aligned_cols=167 Identities=21% Similarity=0.267 Sum_probs=129.5
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
.+++|+.|++++|. +..++ .+..+++|++|+++++. +..++.. ..+++|++|++ +++ .+. .+.+..++.+++
T Consensus 61 ~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L-~~n-~l~-~~~~~~~~~l~~ 134 (272)
T 3rfs_A 61 YLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVL-VEN-QLQ-SLPDGVFDKLTN 134 (272)
T ss_dssp GCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEEC-TTS-CCC-CCCTTTTTTCTT
T ss_pred cCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEEC-CCC-cCC-ccCHHHhccCCC
Confidence 47899999999975 55554 68999999999999974 6666654 67899999999 774 455 455556889999
Q ss_pred cceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCcc
Q 045261 81 LRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSL 158 (227)
Q Consensus 81 L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L 158 (227)
|++|++++| .+..++.... ..+++|+.|+++++ .+..++ ...+..+++|++|+++++ .+..++.. ...++|
T Consensus 135 L~~L~L~~n-~l~~~~~~~~--~~l~~L~~L~l~~n-~l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 207 (272)
T 3rfs_A 135 LTYLNLAHN-QLQSLPKGVF--DKLTNLTELDLSYN-QLQSLP--EGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSL 207 (272)
T ss_dssp CCEEECCSS-CCCCCCTTTT--TTCTTCCEEECCSS-CCCCCC--TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTC
T ss_pred CCEEECCCC-ccCccCHHHh--ccCccCCEEECCCC-CcCccC--HHHhcCCccCCEEECCCC-cCCccCHHHHhCCcCC
Confidence 999999998 7777776542 26899999999995 677776 356789999999999995 57777653 457899
Q ss_pred ceeeecCCCCCCCCCCCCCCCCCcEEeecC
Q 045261 159 LDLCIFNCPNLTSLPKVGLPSSLLELTIFD 188 (227)
Q Consensus 159 ~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~ 188 (227)
++|++++++.. +.+++|+.|+++.
T Consensus 208 ~~L~l~~N~~~------~~~~~l~~l~~~~ 231 (272)
T 3rfs_A 208 QYIWLHDNPWD------CTCPGIRYLSEWI 231 (272)
T ss_dssp CEEECCSSCBC------CCTTTTHHHHHHH
T ss_pred CEEEccCCCcc------ccCcHHHHHHHHH
Confidence 99999987643 2345677776664
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=6.5e-14 Score=120.50 Aligned_cols=173 Identities=24% Similarity=0.295 Sum_probs=110.8
Q ss_pred CCCccEEEeccCCCCCcCCccc-CCCCCcceEeecCCCCCcccC---C-CCCCCCcceeEeccCcccccccchh--cccc
Q 045261 4 PESISSVEIRRCEKLGALPSDM-HKLNSLQDLDIRECPSIVSFP---E-EGFPTNLTSLAIGEDMKMLYKGLVQ--WGLH 76 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~-~~l~~L~~L~l~~c~~l~~~~---~-~~~l~~L~~L~l~~~~~~l~~~~~~--~~~~ 76 (227)
+++|+.|++++| .++.+|..+ +++++|++|+++++.....++ . .+.+++|+.|++ +++ .++ .+.. ..+.
T Consensus 309 ~~~L~~L~l~~n-~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L-s~N-~l~-~~~~~~~~~~ 384 (549)
T 2z81_A 309 LEKVKRITVENS-KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL-SQN-HLR-SMQKTGEILL 384 (549)
T ss_dssp STTCCEEEEESS-CCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEEC-TTS-CCC-CHHHHHHHGG
T ss_pred cccceEEEeccC-ccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEc-cCC-ccc-ccccchhhhh
Confidence 357888888885 467888766 579999999999986443332 1 267789999999 774 454 2221 3477
Q ss_pred cCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCc------------------cCCCCccEE
Q 045261 77 RLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGF------------------HSLTSLRRL 138 (227)
Q Consensus 77 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l------------------~~l~~L~~L 138 (227)
.+++|++|++++| .++.+|..+. .+++|++|+++++ .+..++ ..+ ..+++|++|
T Consensus 385 ~l~~L~~L~Ls~N-~l~~lp~~~~---~~~~L~~L~Ls~N-~l~~l~---~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L 456 (549)
T 2z81_A 385 TLKNLTSLDISRN-TFHPMPDSCQ---WPEKMRFLNLSST-GIRVVK---TCIPQTLEVLDVSNNNLDSFSLFLPRLQEL 456 (549)
T ss_dssp GCTTCCEEECTTC-CCCCCCSCCC---CCTTCCEEECTTS-CCSCCC---TTSCTTCSEEECCSSCCSCCCCCCTTCCEE
T ss_pred cCCCCCEEECCCC-CCccCChhhc---ccccccEEECCCC-Cccccc---chhcCCceEEECCCCChhhhcccCChhcEE
Confidence 8899999999987 7778887664 6778888888874 455555 221 244555666
Q ss_pred eecCCCCCccCCCCCCCCccceeeecCCCCCCCCCCC--CCCCCCcEEeecCCc
Q 045261 139 LIQDCPNLTSLPKVGLPSSLLDLCIFNCPNLTSLPKV--GLPSSLLELTIFDCP 190 (227)
Q Consensus 139 ~l~~c~~l~~~~~~~~~~~L~~l~i~~c~~l~~~~~~--~~~~~L~~L~l~~c~ 190 (227)
+++++ +++.+|.....++|++|+++++. ++.++.. ..+++|+.|++++++
T Consensus 457 ~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 457 YISRN-KLKTLPDASLFPVLLVMKISRNQ-LKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp ECCSS-CCSSCCCGGGCTTCCEEECCSSC-CCCCCTTGGGGCTTCCEEECCSSC
T ss_pred ECCCC-ccCcCCCcccCccCCEEecCCCc-cCCcCHHHHhcCcccCEEEecCCC
Confidence 66553 45555554445566666666543 3333332 235566666665544
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.6e-14 Score=122.86 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=54.5
Q ss_pred ccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecC------CCCCccCCCC-
Q 045261 80 SLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQD------CPNLTSLPKV- 152 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~------c~~l~~~~~~- 152 (227)
+|++|+++++ .+..+|..+.. ..+++|+.|++++ +.+..+| ..+.++++|++|++++ +.-.+.+|..
T Consensus 489 ~L~~L~Ls~N-~l~~lp~~~~~-~~l~~L~~L~Ls~-N~l~~ip---~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l 562 (636)
T 4eco_A 489 LLTSIDLRFN-KLTKLSDDFRA-TTLPYLVGIDLSY-NSFSKFP---TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI 562 (636)
T ss_dssp GCCEEECCSS-CCCBCCGGGST-TTCTTCCEEECCS-SCCSSCC---CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG
T ss_pred CccEEECcCC-cCCccChhhhh-ccCCCcCEEECCC-CCCCCcC---hhhhcCCCCCEEECCCCcccccCcccccChHHH
Confidence 5555555554 44455544310 0355666666665 3444455 5555666666666633 2223334432
Q ss_pred CCCCccceeeecCCCCCCCCCCCCCCCCCcEEeecCCc
Q 045261 153 GLPSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCP 190 (227)
Q Consensus 153 ~~~~~L~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~c~ 190 (227)
..+++|++|++++|.. +.+|.. +.++|++|++++|+
T Consensus 563 ~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 563 TLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNP 598 (636)
T ss_dssp GGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCT
T ss_pred hcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCC
Confidence 3355666666666554 555543 33667777777665
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-13 Score=119.22 Aligned_cols=131 Identities=21% Similarity=0.227 Sum_probs=101.2
Q ss_pred CCCCccEEEeccCCCCCcC-CcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 3 LPESISSVEIRRCEKLGAL-PSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
++++|+.|++++|. ++.+ |..+.++++|++|+++++. +..+++. ..+++|++|++ ++ +.+. ..++..++.++
T Consensus 24 ~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L-s~-n~l~-~~~~~~~~~l~ 98 (549)
T 2z81_A 24 LTAAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDL-SD-NHLS-SLSSSWFGPLS 98 (549)
T ss_dssp CCTTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEC-TT-SCCC-SCCHHHHTTCT
T ss_pred CCCCccEEECcCCc-cCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEEC-CC-CccC-ccCHHHhccCC
Confidence 45789999999975 5544 5788999999999999975 6666543 78899999999 76 4554 44455588999
Q ss_pred ccceEEeccCCCCCc--cCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCC
Q 045261 80 SLRWLLIERCDESEC--FPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCP 144 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~--l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~ 144 (227)
+|++|+++++ .+.. .|..+. .+++|++|+++++..+..++ ...+.++++|++|+++++.
T Consensus 99 ~L~~L~Ls~n-~l~~~~~~~~~~---~l~~L~~L~L~~n~~~~~~~--~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 99 SLKYLNLMGN-PYQTLGVTSLFP---NLTNLQTLRIGNVETFSEIR--RIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp TCCEEECTTC-CCSSSCSSCSCT---TCTTCCEEEEEESSSCCEEC--TTTTTTCCEEEEEEEEETT
T ss_pred CCcEEECCCC-cccccchhhhhh---ccCCccEEECCCCccccccC--HhhhhcccccCeeeccCCc
Confidence 9999999987 5553 344554 68899999999976677776 4678888999999998854
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-14 Score=115.00 Aligned_cols=196 Identities=14% Similarity=0.112 Sum_probs=138.3
Q ss_pred CCCccEEEeccCCCCCcCCccc--CCCCCcceEeecCCCCCcccCCC-CC-----CCCcceeEeccCcccccccchhccc
Q 045261 4 PESISSVEIRRCEKLGALPSDM--HKLNSLQDLDIRECPSIVSFPEE-GF-----PTNLTSLAIGEDMKMLYKGLVQWGL 75 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~--~~l~~L~~L~l~~c~~l~~~~~~-~~-----l~~L~~L~l~~~~~~l~~~~~~~~~ 75 (227)
+++|++|++++|...+.+|..+ ..+++|++|+++++. +..+|.. .. +++|++|++ ++ +.+. .+.+..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L-~~-N~l~-~~~~~~~ 169 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSI-AQ-AHSL-NFSCEQV 169 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEE-ES-CSCC-CCCTTTC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEe-eC-CCCc-cchHHHh
Confidence 6899999999987666788776 899999999999975 5555543 33 389999999 77 4554 4555678
Q ss_pred ccCCccceEEeccCCCCCc--cCccC--cCCCCCCccceEEEecCCCccc---cCCCCCCccCCCCccEEeecCCCCCcc
Q 045261 76 HRLTSLRWLLIERCDESEC--FPDGM--MGMTLPTSLVHLNIVEFQKLKN---LSSSSSGFHSLTSLRRLLIQDCPNLTS 148 (227)
Q Consensus 76 ~~l~~L~~L~l~~~~~l~~--l~~~~--~~~~~~~~L~~L~l~~~~~l~~---l~~~~~~l~~l~~L~~L~l~~c~~l~~ 148 (227)
+.+++|++|+++++..... ++... . .+++|++|+++++ .+.. ++ ...+.++++|++|+++++ .+..
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~---~l~~L~~L~L~~N-~l~~~~~~~--~~~~~~l~~L~~L~Ls~N-~l~~ 242 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPL---KFPTLQVLALRNA-GMETPSGVC--SALAAARVQLQGLDLSHN-SLRD 242 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTT---SCTTCCEEECTTS-CCCCHHHHH--HHHHHTTCCCSEEECTTS-CCCS
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhc---cCCCCCEEECCCC-cCcchHHHH--HHHHhcCCCCCEEECCCC-cCCc
Confidence 8999999999999854333 22222 2 6789999999984 5653 33 123357799999999995 5655
Q ss_pred CC-CC--CCCCccceeeecCCCCCCCCCCCCCCCCCcEEeecCCchhhhhhcccCCCCcccccccceEEeccCC
Q 045261 149 LP-KV--GLPSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCPKLRKECKRDKGKGWSKIANIPMFLIDDTD 219 (227)
Q Consensus 149 ~~-~~--~~~~~L~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (227)
.+ .. ...++|++|+++++. ++.+|.... ++|++|+++++. ++. . +.+..+.++..+.+.+..
T Consensus 243 ~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~-~~L~~L~Ls~N~-l~~----~--p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 243 AAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP-AKLSVLDLSYNR-LDR----N--PSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp SCCCSCCCCCTTCCEEECTTSC-CSSCCSSCC-SEEEEEECCSSC-CCS----C--CCTTTSCEEEEEECTTCT
T ss_pred ccchhhhhhcCCCCEEECCCCc-cChhhhhcc-CCceEEECCCCC-CCC----C--hhHhhCCCCCEEeccCCC
Confidence 43 22 346899999999865 557776433 899999999864 221 1 124455666666666543
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-13 Score=112.76 Aligned_cols=127 Identities=17% Similarity=0.310 Sum_probs=72.1
Q ss_pred CCccEEEeccCCCCCcCCcc-cCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCcc
Q 045261 5 ESISSVEIRRCEKLGALPSD-MHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L 81 (227)
++++.|+++++ .++.+|.. +..+++|++|+++++. +..++.. ..+++|++|++ +++ .+. .+.+..++.+++|
T Consensus 45 ~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L-~~n-~l~-~~~~~~~~~l~~L 119 (390)
T 3o6n_A 45 NNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYM-GFN-AIR-YLPPHVFQNVPLL 119 (390)
T ss_dssp CCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEEC-CSS-CCC-CCCTTTTTTCTTC
T ss_pred CCceEEEecCC-chhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEEC-CCC-CCC-cCCHHHhcCCCCC
Confidence 56666666664 35555543 4566666777766653 4444432 55666666666 553 333 3334445666666
Q ss_pred ceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecC
Q 045261 82 RWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQD 142 (227)
Q Consensus 82 ~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~ 142 (227)
++|+++++ .+..+|.... ..+++|++|++++ +.+..++ ...+..+++|++|++++
T Consensus 120 ~~L~L~~n-~l~~l~~~~~--~~l~~L~~L~L~~-n~l~~~~--~~~~~~l~~L~~L~l~~ 174 (390)
T 3o6n_A 120 TVLVLERN-DLSSLPRGIF--HNTPKLTTLSMSN-NNLERIE--DDTFQATTSLQNLQLSS 174 (390)
T ss_dssp CEEECCSS-CCCCCCTTTT--TTCTTCCEEECCS-SCCCBCC--TTTTSSCTTCCEEECCS
T ss_pred CEEECCCC-ccCcCCHHHh--cCCCCCcEEECCC-CccCccC--hhhccCCCCCCEEECCC
Confidence 66666665 5555655431 1456666666666 3444443 24456666666666665
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-14 Score=115.63 Aligned_cols=175 Identities=17% Similarity=0.166 Sum_probs=109.2
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCC-----CCcceEeecCCCCCcccCCC--CCCCCcceeEeccCccccccc--ch-h
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKL-----NSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKG--LV-Q 72 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l-----~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~--~~-~ 72 (227)
-+++|+.|++++|. ++.+|..++.+ ++|++|+++++. +..++.. ..+++|++|++ +++.-.. . .+ .
T Consensus 119 ~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L-s~N~l~~-~~~~~~~ 194 (312)
T 1wwl_A 119 TGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDL-SDNPELG-ERGLISA 194 (312)
T ss_dssp CSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEEC-CSCTTCH-HHHHHHH
T ss_pred cCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEEC-CCCCcCc-chHHHHH
Confidence 36778888888854 44456656555 788888888764 5555532 67788888888 6643221 1 11 1
Q ss_pred cccccCCccceEEeccCCCCCccC---ccCcCCCCCCccceEEEecCCCccc-cCCCCCCccCCCCccEEeecCCCCCcc
Q 045261 73 WGLHRLTSLRWLLIERCDESECFP---DGMMGMTLPTSLVHLNIVEFQKLKN-LSSSSSGFHSLTSLRRLLIQDCPNLTS 148 (227)
Q Consensus 73 ~~~~~l~~L~~L~l~~~~~l~~l~---~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~l~~l~~L~~L~l~~c~~l~~ 148 (227)
..+..+++|++|+++++ .+..++ .... ..+++|++|+++++ .+.. .| ...+..+++|++|++++ +.++.
T Consensus 195 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~--~~l~~L~~L~Ls~N-~l~~~~~--~~~~~~l~~L~~L~Ls~-N~l~~ 267 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNA-GMETPSGVCSALA--AARVQLQGLDLSHN-SLRDAAG--APSCDWPSQLNSLNLSF-TGLKQ 267 (312)
T ss_dssp SCTTSCTTCCEEECTTS-CCCCHHHHHHHHH--HTTCCCSEEECTTS-CCCSSCC--CSCCCCCTTCCEEECTT-SCCSS
T ss_pred HHhccCCCCCEEECCCC-cCcchHHHHHHHH--hcCCCCCEEECCCC-cCCcccc--hhhhhhcCCCCEEECCC-CccCh
Confidence 12267788888888876 555332 2211 14577888888774 4444 32 23455677888888888 45667
Q ss_pred CCCCCCCCccceeeecCCCCCCCCCCCCCCCCCcEEeecCCc
Q 045261 149 LPKVGLPSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCP 190 (227)
Q Consensus 149 ~~~~~~~~~L~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~c~ 190 (227)
+|.... ++|++|+++++ .++.+|....+++|++|++++.+
T Consensus 268 ip~~~~-~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 268 VPKGLP-AKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCSSCC-SEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTCT
T ss_pred hhhhcc-CCceEEECCCC-CCCCChhHhhCCCCCEEeccCCC
Confidence 776433 77888888875 45555654556778888877654
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=8.1e-14 Score=121.33 Aligned_cols=201 Identities=18% Similarity=0.134 Sum_probs=89.7
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCccccccc-chhcccccCCccc
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKG-LVQWGLHRLTSLR 82 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~-~~~~~~~~l~~L~ 82 (227)
+++|+.|++++|.. +.+|. + .+++|++|+++++.....++. ..+++|+.|++ +++ .+.+. ..+..+..+++|+
T Consensus 306 ~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~~~-~~l~~L~~L~l-s~n-~l~~~~~~~~~~~~~~~L~ 379 (606)
T 3vq2_A 306 HFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISFKK-VALPSLSYLDL-SRN-ALSFSGCCSYSDLGTNSLR 379 (606)
T ss_dssp TCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEECCC-CCCTTCCEEEC-CSS-CEEEEEECCHHHHCCSCCC
T ss_pred cccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccchhh-ccCCCCCEEEC-cCC-ccCCCcchhhhhccCCccc
Confidence 34566666666543 55552 3 566666666665543433321 35566666666 443 22211 0122344455555
Q ss_pred eEEeccCCCCCccCccCcC----------------------CCCCCccceEEEecCCCccccCCCCCCccCCCCccEEee
Q 045261 83 WLLIERCDESECFPDGMMG----------------------MTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLI 140 (227)
Q Consensus 83 ~L~l~~~~~l~~l~~~~~~----------------------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l 140 (227)
+|++++| .+..+|..+.+ ...+++|++|++++|......| ..+.++++|++|++
T Consensus 380 ~L~L~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l 455 (606)
T 3vq2_A 380 HLDLSFN-GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD---GIFLGLTSLNTLKM 455 (606)
T ss_dssp EEECCSC-SEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT---TTTTTCTTCCEEEC
T ss_pred EeECCCC-ccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccch---hhhcCCCCCCEEEC
Confidence 5555554 33333332220 0133444444444433222233 44445555555555
Q ss_pred cCCCCCcc-CCCC-CCCCccceeeecCCCCCCCCCC-CCCCCCCcEEeecCCchhhhhhcccCCCCcccccccceEEecc
Q 045261 141 QDCPNLTS-LPKV-GLPSSLLDLCIFNCPNLTSLPK-VGLPSSLLELTIFDCPKLRKECKRDKGKGWSKIANIPMFLIDD 217 (227)
Q Consensus 141 ~~c~~l~~-~~~~-~~~~~L~~l~i~~c~~l~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 217 (227)
++|.-.+. +|.. ...++|++|++++|...+..+. ...+++|++|++++|..-. .....+..+.++..+.+.+
T Consensus 456 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~l~~ 530 (606)
T 3vq2_A 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF-----LDSSHYNQLYSLSTLDCSF 530 (606)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC-----EEGGGTTTCTTCCEEECTT
T ss_pred CCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCC-----cCHHHccCCCcCCEEECCC
Confidence 55322211 2221 2345566666665533222222 1335666666666653111 1122344455566666655
Q ss_pred CC
Q 045261 218 TD 219 (227)
Q Consensus 218 ~~ 219 (227)
..
T Consensus 531 N~ 532 (606)
T 3vq2_A 531 NR 532 (606)
T ss_dssp SC
T ss_pred Cc
Confidence 43
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-14 Score=115.74 Aligned_cols=198 Identities=11% Similarity=0.072 Sum_probs=109.5
Q ss_pred CCCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhc--------
Q 045261 3 LPESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQW-------- 73 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~-------- 73 (227)
.+++|+.|++++|. ++.++ ..+.++++|++|+++++. +...+....+++|++|++ +++ .++ .+...
T Consensus 32 ~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~L-s~n-~l~-~l~~~~~L~~L~l 106 (317)
T 3o53_A 32 SAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDL-NNN-YVQ-ELLVGPSIETLHA 106 (317)
T ss_dssp TGGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTSC-CEEEEEETTCTTCCEEEC-CSS-EEE-EEEECTTCCEEEC
T ss_pred cCCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCCc-CCcchhhhhcCCCCEEEC-cCC-ccc-cccCCCCcCEEEC
Confidence 35689999999974 55554 678999999999999875 544444567889999998 664 343 11100
Q ss_pred --------ccccCCccceEEeccCCCCCccCc-cCcCCCCCCccceEEEecCCCccccCCCCCCc-cCCCCccEEeecCC
Q 045261 74 --------GLHRLTSLRWLLIERCDESECFPD-GMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGF-HSLTSLRRLLIQDC 143 (227)
Q Consensus 74 --------~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l-~~l~~L~~L~l~~c 143 (227)
....+++|++|+++++ .+..++. .+. .+++|+.|+++++ .+..++ ...+ ..+++|++|++++
T Consensus 107 ~~n~l~~~~~~~~~~L~~L~l~~N-~l~~~~~~~~~---~l~~L~~L~Ls~N-~l~~~~--~~~~~~~l~~L~~L~L~~- 178 (317)
T 3o53_A 107 ANNNISRVSCSRGQGKKNIYLANN-KITMLRDLDEG---CRSRVQYLDLKLN-EIDTVN--FAELAASSDTLEHLNLQY- 178 (317)
T ss_dssp CSSCCSEEEECCCSSCEEEECCSS-CCCSGGGBCTG---GGSSEEEEECTTS-CCCEEE--GGGGGGGTTTCCEEECTT-
T ss_pred CCCccCCcCccccCCCCEEECCCC-CCCCccchhhh---ccCCCCEEECCCC-CCCccc--HHHHhhccCcCCEEECCC-
Confidence 0112334444444444 3333322 221 3455666666553 333322 1222 3456666666666
Q ss_pred CCCccCCCCCCCCccceeeecCCCCCCCCCCC-CCCCCCcEEeecCCchhhhhhcccCCCCcccccccceEEeccCCc
Q 045261 144 PNLTSLPKVGLPSSLLDLCIFNCPNLTSLPKV-GLPSSLLELTIFDCPKLRKECKRDKGKGWSKIANIPMFLIDDTDS 220 (227)
Q Consensus 144 ~~l~~~~~~~~~~~L~~l~i~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 220 (227)
+.+..++.....++|++|+++++. ++.++.. ..+++|++|+++++. ++. ....+..+.++..+.+.+...
T Consensus 179 N~l~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~-l~~-----l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 179 NFIYDVKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK-LVL-----IEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp SCCCEEECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC-CCE-----ECTTCCCCTTCCEEECTTCCC
T ss_pred CcCcccccccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCc-ccc-----hhhHhhcCCCCCEEEccCCCc
Confidence 345555444445666666666643 3333332 235666666666653 221 122344556666777666543
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-13 Score=115.20 Aligned_cols=61 Identities=18% Similarity=0.087 Sum_probs=27.3
Q ss_pred CCccCCCCccEEeecCCCCCccCCCC--CCCCccceeeecCCCCCCCCCC--CCCCCCCcEEeecCC
Q 045261 127 SGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLLDLCIFNCPNLTSLPK--VGLPSSLLELTIFDC 189 (227)
Q Consensus 127 ~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l~i~~c~~l~~~~~--~~~~~~L~~L~l~~c 189 (227)
..+.++++|++|+++++ .+..++.. ...++|++|+++++.. +.++. ...+++|++|++++|
T Consensus 293 ~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N 357 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYN 357 (455)
T ss_dssp TTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCC-CEECGGGGTTCTTCCEEECCSS
T ss_pred hhcccCCCCCEEECCCC-cccccChhHhcCcccCCEEECCCCcc-CCcChhHhcCcccCCEEECCCC
Confidence 34455566666666553 33333221 2334555555555432 22221 122445555555544
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.4e-13 Score=107.79 Aligned_cols=172 Identities=19% Similarity=0.259 Sum_probs=100.0
Q ss_pred CCCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCccc-CCC-CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 3 LPESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSF-PEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~-~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
+.++++.|+++++. ++.++ ..+.++++|++|+++++. +..+ +.. ..+++|++|++ ++ +.+. .++.. + .+
T Consensus 50 ~~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L-s~-n~l~-~l~~~-~--~~ 121 (330)
T 1xku_A 50 LPPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYL-SK-NQLK-ELPEK-M--PK 121 (330)
T ss_dssp CCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEEC-CS-SCCS-BCCSS-C--CT
T ss_pred CCCCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEEC-CC-CcCC-ccChh-h--cc
Confidence 45677777777753 45554 367777888888887764 4444 333 66777888887 55 3343 22221 2 26
Q ss_pred ccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccc
Q 045261 80 SLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLL 159 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~ 159 (227)
+|++|+++++ .+..++.... ..+++|+.|+++++ .+...+.....+.++++|++|++++ +.+..+|.. ..++|+
T Consensus 122 ~L~~L~l~~n-~l~~~~~~~~--~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~-n~l~~l~~~-~~~~L~ 195 (330)
T 1xku_A 122 TLQELRVHEN-EITKVRKSVF--NGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIAD-TNITTIPQG-LPPSLT 195 (330)
T ss_dssp TCCEEECCSS-CCCBBCHHHH--TTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCS-SCCCSCCSS-CCTTCS
T ss_pred cccEEECCCC-cccccCHhHh--cCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCC-CccccCCcc-ccccCC
Confidence 7778877776 5555554321 15678888888774 3332100025677778888888877 456666653 335666
Q ss_pred eeeecCCCCCCCCCC--CCCCCCCcEEeecCC
Q 045261 160 DLCIFNCPNLTSLPK--VGLPSSLLELTIFDC 189 (227)
Q Consensus 160 ~l~i~~c~~l~~~~~--~~~~~~L~~L~l~~c 189 (227)
+|+++++. ++.++. ...+++|++|+++++
T Consensus 196 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n 226 (330)
T 1xku_A 196 ELHLDGNK-ITKVDAASLKGLNNLAKLGLSFN 226 (330)
T ss_dssp EEECTTSC-CCEECTGGGTTCTTCCEEECCSS
T ss_pred EEECCCCc-CCccCHHHhcCCCCCCEEECCCC
Confidence 66666654 332221 123455555555554
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-13 Score=119.43 Aligned_cols=103 Identities=18% Similarity=0.159 Sum_probs=70.2
Q ss_pred CCCccEEEeccCCCCCcC-CcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 4 PESISSVEIRRCEKLGAL-PSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
+++|+.|++++|. +..+ |..++++++|++|+++++. +..+++. +.+++|+.|++ +++ .+. .+++..++.+++
T Consensus 74 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L-~~n-~l~-~l~~~~~~~l~~ 148 (597)
T 3oja_B 74 FRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVL-ERN-DLS-SLPRGIFHNTPK 148 (597)
T ss_dssp CCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC-CSS-CCC-CCCTTTTTTCTT
T ss_pred CCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEe-eCC-CCC-CCCHHHhccCCC
Confidence 5678888888864 4444 3577888888888888765 5555544 67788888888 664 454 455555678888
Q ss_pred cceEEeccCCCCCccCc-cCcCCCCCCccceEEEec
Q 045261 81 LRWLLIERCDESECFPD-GMMGMTLPTSLVHLNIVE 115 (227)
Q Consensus 81 L~~L~l~~~~~l~~l~~-~~~~~~~~~~L~~L~l~~ 115 (227)
|++|++++| .+..++. .+. .+++|+.|++++
T Consensus 149 L~~L~Ls~N-~l~~~~~~~~~---~l~~L~~L~L~~ 180 (597)
T 3oja_B 149 LTTLSMSNN-NLERIEDDTFQ---ATTSLQNLQLSS 180 (597)
T ss_dssp CCEEECCSS-CCCBCCTTTTT---TCTTCCEEECTT
T ss_pred CCEEEeeCC-cCCCCChhhhh---cCCcCcEEECcC
Confidence 888888887 4544443 333 566777777766
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-13 Score=111.79 Aligned_cols=174 Identities=20% Similarity=0.213 Sum_probs=121.6
Q ss_pred CCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcc------
Q 045261 4 PESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWG------ 74 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~------ 74 (227)
+++|++|++++|...+.+| ..+.+++++.++.+.++..+..+++. ..+++|+.|++ ++ +.+. .+++..
T Consensus 53 l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l-~~-n~l~-~~~~~~~~~~~~ 129 (350)
T 4ay9_X 53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI-SN-TGIK-HLPDVHKIHSLQ 129 (350)
T ss_dssp CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEE-EE-ECCS-SCCCCTTCCBSS
T ss_pred CCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccc-cc-cccc-cCCchhhcccch
Confidence 6789999999987666666 35677888777666666667777554 66778888877 54 3332 112211
Q ss_pred -------------------cccC-CccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCC
Q 045261 75 -------------------LHRL-TSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTS 134 (227)
Q Consensus 75 -------------------~~~l-~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~ 134 (227)
+..+ ..++.|+++++ .++.++.... ...+|+++++.+++.++.+| ...++.+++
T Consensus 130 l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f---~~~~L~~l~l~~~n~l~~i~--~~~f~~l~~ 203 (350)
T 4ay9_X 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAF---NGTQLDELNLSDNNNLEELP--NDVFHGASG 203 (350)
T ss_dssp CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSS---TTEEEEEEECTTCTTCCCCC--TTTTTTEEC
T ss_pred hhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhhc---cccchhHHhhccCCcccCCC--HHHhccCcc
Confidence 2222 23555666654 5555655543 44678888888778888887 456788889
Q ss_pred ccEEeecCCCCCccCCCCCCCCccceeeecCCCCCCCCCCCCCCCCCcEEeecC
Q 045261 135 LRRLLIQDCPNLTSLPKVGLPSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFD 188 (227)
Q Consensus 135 L~~L~l~~c~~l~~~~~~~~~~~L~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~ 188 (227)
|++|++++ +.++.+|.. .+.+|++|.+.++..++.+|....+++|+.+++..
T Consensus 204 L~~LdLs~-N~l~~lp~~-~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 204 PVILDISR-TRIHSLPSY-GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp CSEEECTT-SCCCCCCSS-SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred cchhhcCC-CCcCccChh-hhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 99999988 578888874 46788888888888888888766688999998864
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-13 Score=122.34 Aligned_cols=178 Identities=16% Similarity=0.097 Sum_probs=131.1
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
++++|+.|++++|......|..+.++++|++|++++|.....+++. ..+++|++|++ +++ .+. ...+..++.+++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~L-s~N-~l~-~~~p~~~~~l~~ 98 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL-GSS-KIY-FLHPDAFQGLFH 98 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEEC-TTC-CCC-EECTTSSCSCSS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEEC-CCC-cCc-ccCHhHccCCcc
Confidence 5689999999997543445688999999999999998777777443 88999999999 774 454 445667999999
Q ss_pred cceEEeccCCCCCccCcc--CcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCC--C-
Q 045261 81 LRWLLIERCDESECFPDG--MMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGL--P- 155 (227)
Q Consensus 81 L~~L~l~~~~~l~~l~~~--~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~--~- 155 (227)
|++|++++|.....++.. +. .+++|++|+++++ .+..++ ....++++++|++|+++++ .+..+....+ .
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~---~L~~L~~L~Ls~N-~l~~~~-~~~~~~~L~~L~~L~Ls~N-~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFR---NLKALTRLDLSKN-QIRSLY-LHPSFGKLNSLKSIDFSSN-QIFLVCEHELEPLQ 172 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCS---SCSSCCEEEEESC-CCCCCC-CCGGGGTCSSCCEEEEESS-CCCCCCSGGGHHHH
T ss_pred cCEeeCcCCCCCcccccCcccc---ccCCCCEEECCCC-cccccc-cchhHhhCCCCCEEECCCC-cCCeeCHHHccccc
Confidence 999999998443334543 43 7899999999994 555543 0246889999999999994 5555443322 2
Q ss_pred -CccceeeecCCCCCCCCCCC-CCCC------CCcEEeecCC
Q 045261 156 -SSLLDLCIFNCPNLTSLPKV-GLPS------SLLELTIFDC 189 (227)
Q Consensus 156 -~~L~~l~i~~c~~l~~~~~~-~~~~------~L~~L~l~~c 189 (227)
++|+.|+++++......+.. +.++ +|+.|++++|
T Consensus 173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred CCccceEECCCCccccccccchhhcCCccccCceeEEecCCC
Confidence 68899999987665544432 2222 3899999987
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.2e-14 Score=122.07 Aligned_cols=130 Identities=21% Similarity=0.100 Sum_probs=58.3
Q ss_pred CCCccEEEeccCCCCCc--CCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 4 PESISSVEIRRCEKLGA--LPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
+++|+.|++++|...+. +|..+..+++|++|++++|. +..++.. ..+++|+.|++ +++ .+.+..+...+..+++
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l-~~n-~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDF-QHS-TLKRVTEFSAFLSLEK 425 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEEC-TTS-EEESTTTTTTTTTCTT
T ss_pred CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeEC-CCC-ccCCccChhhhhcccc
Confidence 34555555555421111 24444555555666655543 4444433 45556666665 443 2221222133455555
Q ss_pred cceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccc-cCCCCCCccCCCCccEEeecC
Q 045261 81 LRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKN-LSSSSSGFHSLTSLRRLLIQD 142 (227)
Q Consensus 81 L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~l~~l~~L~~L~l~~ 142 (227)
|++|++++|......|..+. .+++|++|+++++..... +| ..++.+++|++|++++
T Consensus 426 L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~Ls~ 482 (606)
T 3vq2_A 426 LLYLDISYTNTKIDFDGIFL---GLTSLNTLKMAGNSFKDNTLS---NVFANTTNLTFLDLSK 482 (606)
T ss_dssp CCEEECTTSCCEECCTTTTT---TCTTCCEEECTTCEEGGGEEC---SCCTTCTTCCEEECTT
T ss_pred CCEEECcCCCCCccchhhhc---CCCCCCEEECCCCcCCCcchH---HhhccCCCCCEEECCC
Confidence 55555555532222333332 345555555554322211 33 4444455555555555
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.8e-14 Score=121.76 Aligned_cols=175 Identities=21% Similarity=0.163 Sum_probs=99.3
Q ss_pred CCCccEEEeccCCCCCcC---CcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 4 PESISSVEIRRCEKLGAL---PSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~l---p~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
+++|+.|++++|. +... +..+..+++|++|++++|. +..++.. ..+++|+.|++ +++ .+.+..+...+..++
T Consensus 346 ~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l-~~n-~l~~~~~~~~~~~l~ 421 (570)
T 2z63_A 346 LPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDF-QHS-NLKQMSEFSVFLSLR 421 (570)
T ss_dssp CTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEEC-TTS-EEESCTTSCTTTTCT
T ss_pred CCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEc-cCC-ccccccchhhhhcCC
Confidence 3445555555532 2221 3344555666666666553 3333332 45666777777 553 333222223466677
Q ss_pred ccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCc-cccCCCCCCccCCCCccEEeecCCCCCccC-CCC-CCCC
Q 045261 80 SLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKL-KNLSSSSSGFHSLTSLRRLLIQDCPNLTSL-PKV-GLPS 156 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l-~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~-~~~-~~~~ 156 (227)
+|++|++++|......+..+. .+++|++|++++|... ..+| ..+..+++|++|++++| .+..+ |.. ...+
T Consensus 422 ~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~l~~n~l~~~~~p---~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~ 494 (570)
T 2z63_A 422 NLIYLDISHTHTRVAFNGIFN---GLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLDLSQC-QLEQLSPTAFNSLS 494 (570)
T ss_dssp TCCEEECTTSCCEECCTTTTT---TCTTCCEEECTTCEEGGGEEC---SCCTTCTTCCEEECTTS-CCCEECTTTTTTCT
T ss_pred CCCEEeCcCCcccccchhhhh---cCCcCcEEECcCCcCccccch---hhhhcccCCCEEECCCC-ccccCChhhhhccc
Confidence 777777777633333444443 5677777777774432 2466 67777788888888775 34444 332 3456
Q ss_pred ccceeeecCCCCCCCCCCC--CCCCCCcEEeecCCc
Q 045261 157 SLLDLCIFNCPNLTSLPKV--GLPSSLLELTIFDCP 190 (227)
Q Consensus 157 ~L~~l~i~~c~~l~~~~~~--~~~~~L~~L~l~~c~ 190 (227)
+|++|++++|. ++.++.. ..+++|++|++++++
T Consensus 495 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 495 SLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCc
Confidence 78888887764 4444432 346778888887754
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.53 E-value=4.4e-14 Score=123.03 Aligned_cols=167 Identities=16% Similarity=0.206 Sum_probs=121.3
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+++|+.|++++| .+..++ .+..+++|+.|++++|. +..++....+++|+.|++ +++ .+. .+ + .+..+++|++
T Consensus 42 L~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~L-s~N-~l~-~l-~-~l~~l~~L~~ 113 (605)
T 1m9s_A 42 LNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKPLTNLKNLGWLFL-DEN-KIK-DL-S-SLKDLKKLKS 113 (605)
T ss_dssp HTTCCCCBCTTC-CCCCCT-TGGGCTTCCEEECTTSC-CCCCGGGGGCTTCCEEEC-CSS-CCC-CC-T-TSTTCTTCCE
T ss_pred CCCCCEEECcCC-CCCCCh-HHccCCCCCEEEeeCCC-CCCChhhccCCCCCEEEC-cCC-CCC-CC-h-hhccCCCCCE
Confidence 467888888885 466666 47888889999998874 555555567888899988 664 444 22 2 5788888999
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeee
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCI 163 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i 163 (227)
|++++| .+..++. +. .+++|+.|++++ +.+..+ ..+..+++|+.|++++| .+..++....+++|++|++
T Consensus 114 L~Ls~N-~l~~l~~-l~---~l~~L~~L~Ls~-N~l~~l----~~l~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~L 182 (605)
T 1m9s_A 114 LSLEHN-GISDING-LV---HLPQLESLYLGN-NKITDI----TVLSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYL 182 (605)
T ss_dssp EECTTS-CCCCCGG-GG---GCTTCSEEECCS-SCCCCC----GGGGSCTTCSEEECCSS-CCCCCGGGTTCTTCCEEEC
T ss_pred EEecCC-CCCCCcc-cc---CCCccCEEECCC-CccCCc----hhhcccCCCCEEECcCC-cCCCchhhccCCCCCEEEC
Confidence 988887 5666654 32 678889998887 455555 35778888999998885 5666544556778888888
Q ss_pred cCCCCCCCCCCCCCCCCCcEEeecCCc
Q 045261 164 FNCPNLTSLPKVGLPSSLLELTIFDCP 190 (227)
Q Consensus 164 ~~c~~l~~~~~~~~~~~L~~L~l~~c~ 190 (227)
++| .+..++....+++|+.|++++|+
T Consensus 183 s~N-~i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 183 SKN-HISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CSS-CCCBCGGGTTCTTCSEEECCSEE
T ss_pred cCC-CCCCChHHccCCCCCEEEccCCc
Confidence 886 45556655567888898888865
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.52 E-value=4e-14 Score=127.66 Aligned_cols=156 Identities=14% Similarity=0.176 Sum_probs=117.2
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCc--ccCCC--------CCCCCcceeEeccCcccccccchh
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIV--SFPEE--------GFPTNLTSLAIGEDMKMLYKGLVQ 72 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~--~~~~~--------~~l~~L~~L~l~~~~~~l~~~~~~ 72 (227)
-+++|+.|++++|...+.+|..++++++|++|+++++..+. .+|.. ..+++|+.|++ ++ +.+. .++.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~L-s~-N~L~-~ip~ 565 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM-GY-NNLE-EFPA 565 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEEC-CS-SCCC-BCCC
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEe-eC-CcCC-ccCC
Confidence 36899999999998889999999999999999999986344 24432 35569999999 66 4554 4433
Q ss_pred -cccccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCC-ccEEeecCCCCCccCC
Q 045261 73 -WGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTS-LRRLLIQDCPNLTSLP 150 (227)
Q Consensus 73 -~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~-L~~L~l~~c~~l~~~~ 150 (227)
..++.+++|++|+++++ .+..+| .+. .+++|+.|++++ +.+..+| ..+..+++ |++|+++++ .+..+|
T Consensus 566 ~~~l~~L~~L~~L~Ls~N-~l~~lp-~~~---~L~~L~~L~Ls~-N~l~~lp---~~l~~l~~~L~~L~Ls~N-~L~~lp 635 (876)
T 4ecn_A 566 SASLQKMVKLGLLDCVHN-KVRHLE-AFG---TNVKLTDLKLDY-NQIEEIP---EDFCAFTDQVEGLGFSHN-KLKYIP 635 (876)
T ss_dssp HHHHTTCTTCCEEECTTS-CCCBCC-CCC---TTSEESEEECCS-SCCSCCC---TTSCEECTTCCEEECCSS-CCCSCC
T ss_pred hhhhhcCCCCCEEECCCC-Ccccch-hhc---CCCcceEEECcC-Cccccch---HHHhhccccCCEEECcCC-CCCcCc
Confidence 25888999999999987 566888 554 788999999988 4566888 77888888 999999985 466777
Q ss_pred CC-CCC--CccceeeecCCCCCCC
Q 045261 151 KV-GLP--SSLLDLCIFNCPNLTS 171 (227)
Q Consensus 151 ~~-~~~--~~L~~l~i~~c~~l~~ 171 (227)
.. ... ++|+.|+++++...+.
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ 659 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSE 659 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTT
T ss_pred hhhhccccCCCCEEECcCCcCCCc
Confidence 53 112 2377777777655433
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.9e-14 Score=112.20 Aligned_cols=197 Identities=12% Similarity=0.071 Sum_probs=134.8
Q ss_pred CCccEEEeccCCCCCcCCccc--CCCCCcceEeecCCCCCcccCC---C--CCCCCcceeEeccCcccccccchhccccc
Q 045261 5 ESISSVEIRRCEKLGALPSDM--HKLNSLQDLDIRECPSIVSFPE---E--GFPTNLTSLAIGEDMKMLYKGLVQWGLHR 77 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~--~~l~~L~~L~l~~c~~l~~~~~---~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~ 77 (227)
++|++|++++|...+..|..+ ..+++|++|+++++......+. . ..+++|++|++ +++ .+. ...+..++.
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~L-s~n-~l~-~~~~~~~~~ 167 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSI-AQA-HSP-AFSCEQVRA 167 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEE-ECC-SSC-CCCTTSCCC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEe-eCC-Ccc-hhhHHHhcc
Confidence 579999999987666777777 8999999999999763332221 1 45889999999 774 444 455567889
Q ss_pred CCccceEEeccCCCCCc--cCccCcCCCCCCccceEEEecCCCccccCCCCC----CccCCCCccEEeecCCCCCccC-C
Q 045261 78 LTSLRWLLIERCDESEC--FPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSS----GFHSLTSLRRLLIQDCPNLTSL-P 150 (227)
Q Consensus 78 l~~L~~L~l~~~~~l~~--l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~----~l~~l~~L~~L~l~~c~~l~~~-~ 150 (227)
+++|++|+++++..... ++.... ...+++|++|++++ +.+..++ . .++++++|++|+++++ .+..+ |
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~-~~~l~~L~~L~Ls~-N~l~~l~---~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p 241 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALC-PHKFPAIQNLALRN-TGMETPT---GVCAALAAAGVQPHSLDLSHN-SLRATVN 241 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSC-TTSSCCCCSCBCCS-SCCCCHH---HHHHHHHHHTCCCSSEECTTS-CCCCCCC
T ss_pred CCCCCEEECCCCCCccchhhhHHHh-hhcCCCCCEEECCC-CCCCchH---HHHHHHHhcCCCCCEEECCCC-CCCccch
Confidence 99999999999843321 221110 01578999999998 4666554 2 2467899999999994 56655 4
Q ss_pred CC-CC---CCccceeeecCCCCCCCCCCCCCCCCCcEEeecCCchhhhhhcccCCCCcccccccceEEeccCC
Q 045261 151 KV-GL---PSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCPKLRKECKRDKGKGWSKIANIPMFLIDDTD 219 (227)
Q Consensus 151 ~~-~~---~~~L~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (227)
.. .. +++|++|+++++. ++.+|.. ++++|++|+++++.- +.. +....+.++..+.+.+..
T Consensus 242 ~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~-~~~~L~~L~Ls~N~l-~~~------~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 242 PSAPRCMWSSALNSLNLSFAG-LEQVPKG-LPAKLRVLDLSSNRL-NRA------PQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCSSCCCCTTCCCEECCSSC-CCSCCSC-CCSCCSCEECCSCCC-CSC------CCTTSCCCCSCEECSSTT
T ss_pred hhHHhccCcCcCCEEECCCCC-CCchhhh-hcCCCCEEECCCCcC-CCC------chhhhCCCccEEECcCCC
Confidence 32 22 2689999998865 5577653 348999999998752 110 123445666777776553
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.51 E-value=6e-14 Score=105.30 Aligned_cols=148 Identities=17% Similarity=0.165 Sum_probs=85.4
Q ss_pred CCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceE
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWL 84 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L 84 (227)
++|+.|+++++ .++.+| .+..+++|++|++++| .+..++....+++|++|++ ++ +.+.+. .+..+..+++|++|
T Consensus 44 ~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l-~~-n~l~~~-~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 44 NSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRI-MG-KDVTSD-KIPNLSGLTSLTLL 117 (197)
T ss_dssp HTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEE-EC-TTCBGG-GSCCCTTCTTCCEE
T ss_pred CCccEEeccCC-CccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEe-EC-CccCcc-cChhhcCCCCCCEE
Confidence 45667777764 445555 4666677777777666 3444443355667777777 55 334321 23346666777777
Q ss_pred EeccCCCCCc-cCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeee
Q 045261 85 LIERCDESEC-FPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCI 163 (227)
Q Consensus 85 ~l~~~~~l~~-l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i 163 (227)
+++++ .+.. .+..+. .+++|++|++++|..+..++ .+..+++|++|++++| .+..++....+++|++|++
T Consensus 118 ~Ls~n-~i~~~~~~~l~---~l~~L~~L~L~~n~~i~~~~----~l~~l~~L~~L~l~~n-~i~~~~~l~~l~~L~~L~l 188 (197)
T 4ezg_A 118 DISHS-AHDDSILTKIN---TLPKVNSIDLSYNGAITDIM----PLKTLPELKSLNIQFD-GVHDYRGIEDFPKLNQLYA 188 (197)
T ss_dssp ECCSS-BCBGGGHHHHT---TCSSCCEEECCSCTBCCCCG----GGGGCSSCCEEECTTB-CCCCCTTGGGCSSCCEEEE
T ss_pred EecCC-ccCcHhHHHHh---hCCCCCEEEccCCCCccccH----hhcCCCCCCEEECCCC-CCcChHHhccCCCCCEEEe
Confidence 77765 3332 333333 56667777776654455554 3566667777777663 4555554344566666666
Q ss_pred cCCC
Q 045261 164 FNCP 167 (227)
Q Consensus 164 ~~c~ 167 (227)
++++
T Consensus 189 ~~N~ 192 (197)
T 4ezg_A 189 FSQT 192 (197)
T ss_dssp CBC-
T ss_pred eCcc
Confidence 6543
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-12 Score=110.30 Aligned_cols=160 Identities=21% Similarity=0.174 Sum_probs=99.7
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+++|+.|+++++ .++.+| ++..+++|++|+++++. +..++ ...+++|++|++ +++ .++ .+ .++.+++|++
T Consensus 41 l~~L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n~-l~~~~-~~~l~~L~~L~L-s~N-~l~-~~---~~~~l~~L~~ 110 (457)
T 3bz5_A 41 LATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSNN-ITTLD-LSQNTNLTYLAC-DSN-KLT-NL---DVTPLTKLTY 110 (457)
T ss_dssp HTTCCEEECCSS-CCCCCT-TGGGCTTCSEEECCSSC-CSCCC-CTTCTTCSEEEC-CSS-CCS-CC---CCTTCTTCCE
T ss_pred cCCCCEEEccCC-CcccCh-hhcccCCCCEEEccCCc-CCeEc-cccCCCCCEEEC-cCC-CCc-ee---ecCCCCcCCE
Confidence 467888888886 466666 57888888888888864 66565 357788888888 663 454 22 2677888888
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeee
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCI 163 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i 163 (227)
|+++++ .++.++ +. .+++|++|++++ +.+..++ ++++++|++|++++|..++.++. ...++|++|++
T Consensus 111 L~L~~N-~l~~l~--~~---~l~~L~~L~l~~-N~l~~l~-----l~~l~~L~~L~l~~n~~~~~~~~-~~l~~L~~L~l 177 (457)
T 3bz5_A 111 LNCDTN-KLTKLD--VS---QNPLLTYLNCAR-NTLTEID-----VSHNTQLTELDCHLNKKITKLDV-TPQTQLTTLDC 177 (457)
T ss_dssp EECCSS-CCSCCC--CT---TCTTCCEEECTT-SCCSCCC-----CTTCTTCCEEECTTCSCCCCCCC-TTCTTCCEEEC
T ss_pred EECCCC-cCCeec--CC---CCCcCCEEECCC-Cccceec-----cccCCcCCEEECCCCCccccccc-ccCCcCCEEEC
Confidence 888876 566665 32 567777877776 3454443 45566666666666655555532 33455666666
Q ss_pred cCCCCCCCCCCCCCCCCCcEEeecC
Q 045261 164 FNCPNLTSLPKVGLPSSLLELTIFD 188 (227)
Q Consensus 164 ~~c~~l~~~~~~~~~~~L~~L~l~~ 188 (227)
+++. ++.++ .+.+++|++|++++
T Consensus 178 s~n~-l~~l~-l~~l~~L~~L~l~~ 200 (457)
T 3bz5_A 178 SFNK-ITELD-VSQNKLLNRLNCDT 200 (457)
T ss_dssp CSSC-CCCCC-CTTCTTCCEEECCS
T ss_pred CCCc-cceec-cccCCCCCEEECcC
Confidence 5542 33333 22234444444443
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=5.5e-13 Score=117.61 Aligned_cols=178 Identities=16% Similarity=0.077 Sum_probs=89.2
Q ss_pred CCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccc----------------
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKML---------------- 66 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l---------------- 66 (227)
++|+.|++++|...+..|..+..+++|+.|+++++.....++.. ..+++|++|++ +++...
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L-s~n~l~~~~~~~~~~~~~L~~L 459 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL-SYNKYLQLTRNSFALVPSLQRL 459 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEEC-CSCSEEECCTTTTTTCTTCCEE
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEec-CCCCcceeChhhhhcCcccccc
Confidence 35666666665433333455566666666666655422233322 34455555555 443211
Q ss_pred -------c-ccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCC------CCCCccCC
Q 045261 67 -------Y-KGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSS------SSSGFHSL 132 (227)
Q Consensus 67 -------~-~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~------~~~~l~~l 132 (227)
. ....+..+..+++|++|+++++ .+..++.... ..+++|++|++++ +.+..++. ....+.++
T Consensus 460 ~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~--~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~~~~~~l 535 (680)
T 1ziw_A 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDML--EGLEKLEILDLQH-NNLARLWKHANPGGPIYFLKGL 535 (680)
T ss_dssp ECTTSCCBCTTCSSCTTTTCTTCCEEECCSS-CCCCCCTTTT--TTCTTCCEEECCS-SCCGGGGSTTSTTSCCCTTTTC
T ss_pred hhccccccccccCCcccccCCCCCEEECCCC-CCCcCChhhh--ccccccCEEeCCC-CCccccchhhccCCcchhhcCC
Confidence 0 0112233555566666666655 4444443321 1456666666665 33443310 01124566
Q ss_pred CCccEEeecCCCCCccCCCC--CCCCccceeeecCCCCCCCCCCCC--CCCCCcEEeecCC
Q 045261 133 TSLRRLLIQDCPNLTSLPKV--GLPSSLLDLCIFNCPNLTSLPKVG--LPSSLLELTIFDC 189 (227)
Q Consensus 133 ~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l~i~~c~~l~~~~~~~--~~~~L~~L~l~~c 189 (227)
++|++|++++ +.+..+|.. ...++|+.|+++++ .++.++... .+++|++|+++++
T Consensus 536 ~~L~~L~L~~-N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 536 SHLHILNLES-NGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp TTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCCCEEECCC-CCCCCCCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC
Confidence 6666666666 355566543 33456666776553 345555432 3566677766665
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.8e-13 Score=109.64 Aligned_cols=177 Identities=17% Similarity=0.210 Sum_probs=107.4
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLR 82 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~ 82 (227)
-+++|++|++++|......|..+.++++|++|+++++. +..+|.. ..++|++|++ ++ +.+. .+++..+..+++|+
T Consensus 76 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~-~~~~L~~L~l-~~-n~i~-~~~~~~~~~l~~L~ 150 (332)
T 2ft3_A 76 GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPN-LPSSLVELRI-HD-NRIR-KVPKGVFSGLRNMN 150 (332)
T ss_dssp TCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSS-CCTTCCEEEC-CS-SCCC-CCCSGGGSSCSSCC
T ss_pred CCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCcc-ccccCCEEEC-CC-CccC-ccCHhHhCCCccCC
Confidence 36789999999975333346788999999999998864 6667665 3378888888 65 4444 44444567778888
Q ss_pred eEEeccCCCCCc---cCccCcCC-----------------CCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecC
Q 045261 83 WLLIERCDESEC---FPDGMMGM-----------------TLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQD 142 (227)
Q Consensus 83 ~L~l~~~~~l~~---l~~~~~~~-----------------~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~ 142 (227)
+|+++++ .++. .+..+... ...++|++|++++ +.+..++ ...+..+++|++|++++
T Consensus 151 ~L~l~~n-~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~-n~i~~~~--~~~l~~l~~L~~L~L~~ 226 (332)
T 2ft3_A 151 CIEMGGN-PLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDH-NKIQAIE--LEDLLRYSKLYRLGLGH 226 (332)
T ss_dssp EEECCSC-CCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCS-SCCCCCC--TTSSTTCTTCSCCBCCS
T ss_pred EEECCCC-ccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCC-CcCCccC--HHHhcCCCCCCEEECCC
Confidence 8887775 3321 12111100 0124566666655 3444433 24566667777777776
Q ss_pred CCCCccCCCC--CCCCccceeeecCCCCCCCCCCC-CCCCCCcEEeecCCc
Q 045261 143 CPNLTSLPKV--GLPSSLLDLCIFNCPNLTSLPKV-GLPSSLLELTIFDCP 190 (227)
Q Consensus 143 c~~l~~~~~~--~~~~~L~~l~i~~c~~l~~~~~~-~~~~~L~~L~l~~c~ 190 (227)
+.+..++.. ...++|++|+++++. ++.+|.. ..+++|++|+++++.
T Consensus 227 -N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 227 -NQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp -SCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSSC
T ss_pred -CcCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCCC
Confidence 345555442 345667777777653 4455542 345677777777653
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-15 Score=122.34 Aligned_cols=199 Identities=14% Similarity=0.153 Sum_probs=139.5
Q ss_pred CCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcc--cCCC-CCCCCcceeEeccCcccccccchhcccccCCcc
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVS--FPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~--~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L 81 (227)
++++.|+++++. ++..+..+..+++|++|++++|. +.. ++.. ..+++|++|++ ++|. +.+. .+..+..+++|
T Consensus 70 ~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L-~~~~-l~~~-~~~~l~~~~~L 144 (336)
T 2ast_B 70 QGVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSL-EGLR-LSDP-IVNTLAKNSNL 144 (336)
T ss_dssp TTCSEEECTTCE-ECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEEC-TTCB-CCHH-HHHHHTTCTTC
T ss_pred ccceEEEcCCcc-ccccchhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeC-cCcc-cCHH-HHHHHhcCCCC
Confidence 678889998854 45555557789999999999986 432 4443 77899999999 8864 5423 34457789999
Q ss_pred ceEEeccCCCCCc--cCccCcCCCCCCccceEEEecCCCccc--cCCCCCCccCCC-CccEEeecCCC-CCc--cCCCC-
Q 045261 82 RWLLIERCDESEC--FPDGMMGMTLPTSLVHLNIVEFQKLKN--LSSSSSGFHSLT-SLRRLLIQDCP-NLT--SLPKV- 152 (227)
Q Consensus 82 ~~L~l~~~~~l~~--l~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~l~~l~-~L~~L~l~~c~-~l~--~~~~~- 152 (227)
++|++++|..++. ++..+. .+++|++|++++|..+.. ++ ..+..++ +|++|++++|. .+. .++..
T Consensus 145 ~~L~L~~~~~l~~~~l~~~~~---~~~~L~~L~l~~~~~l~~~~~~---~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~ 218 (336)
T 2ast_B 145 VRLNLSGCSGFSEFALQTLLS---SCSRLDELNLSWCFDFTEKHVQ---VAVAHVSETITQLNLSGYRKNLQKSDLSTLV 218 (336)
T ss_dssp SEEECTTCBSCCHHHHHHHHH---HCTTCCEEECCCCTTCCHHHHH---HHHHHSCTTCCEEECCSCGGGSCHHHHHHHH
T ss_pred CEEECCCCCCCCHHHHHHHHh---cCCCCCEEcCCCCCCcChHHHH---HHHHhcccCCCEEEeCCCcccCCHHHHHHHH
Confidence 9999999866663 555443 678999999999756664 55 6677899 99999999985 343 22221
Q ss_pred CCCCccceeeecCCCCCCC--CCCCCCCCCCcEEeecCCchhhhhhcccCCCCcccccccceEEeccC
Q 045261 153 GLPSSLLDLCIFNCPNLTS--LPKVGLPSSLLELTIFDCPKLRKECKRDKGKGWSKIANIPMFLIDDT 218 (227)
Q Consensus 153 ~~~~~L~~l~i~~c~~l~~--~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 218 (227)
...++|++|++++|..++. ++....+++|++|++++|..+..... ..+..+.++..+.+.++
T Consensus 219 ~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 219 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL----LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG----GGGGGCTTCCEEECTTS
T ss_pred hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH----HHHhcCCCCCEEeccCc
Confidence 3467999999999986553 22334469999999999974432211 12233445555555554
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.8e-13 Score=106.66 Aligned_cols=84 Identities=17% Similarity=0.200 Sum_probs=36.0
Q ss_pred CccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 6 SISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 6 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+++.++++++ .++.+|..+ .++|++|+++++. +..++.. ..+++|++|++ +++ .+. .+.+..++.+++|++
T Consensus 34 ~l~~l~~~~~-~l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L-~~n-~l~-~~~~~~~~~l~~L~~ 106 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKEI--SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVL-VNN-KIS-KIHEKAFSPLRKLQK 106 (332)
T ss_dssp ETTEEECCSS-CCSSCCSCC--CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEEC-CSS-CCC-EECGGGSTTCTTCCE
T ss_pred cCCEEECCCC-CccccCCCC--CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEEC-CCC-ccC-ccCHhHhhCcCCCCE
Confidence 3445555542 334444333 2345555555432 3333321 44455555555 432 222 222333444555555
Q ss_pred EEeccCCCCCccCc
Q 045261 84 LLIERCDESECFPD 97 (227)
Q Consensus 84 L~l~~~~~l~~l~~ 97 (227)
|+++++ .+..+|.
T Consensus 107 L~L~~n-~l~~l~~ 119 (332)
T 2ft3_A 107 LYISKN-HLVEIPP 119 (332)
T ss_dssp EECCSS-CCCSCCS
T ss_pred EECCCC-cCCccCc
Confidence 555544 3444443
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.51 E-value=3e-13 Score=114.36 Aligned_cols=144 Identities=20% Similarity=0.260 Sum_probs=66.6
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+++|+.|++++|. +..++ .+..+++|++|++++|. +..++....+++|+.|++ +++ .+. .+ ..+..+++|++
T Consensus 176 l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l-~~n-~l~-~~--~~l~~l~~L~~ 247 (466)
T 1o6v_A 176 LTTLERLDISSNK-VSDIS-VLAKLTNLESLIATNNQ-ISDITPLGILTNLDELSL-NGN-QLK-DI--GTLASLTNLTD 247 (466)
T ss_dssp CTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSC-CCCCGGGGGCTTCCEEEC-CSS-CCC-CC--GGGGGCTTCSE
T ss_pred CCCCCEEECcCCc-CCCCh-hhccCCCCCEEEecCCc-ccccccccccCCCCEEEC-CCC-Ccc-cc--hhhhcCCCCCE
Confidence 4556666666643 33333 35556666666666553 333332344556666666 443 222 11 12445555666
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeee
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCI 163 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i 163 (227)
|++++| .+..++. +. .+++|+.|++++ +.+..++ . +..+++|++|++++| .+..++....+++|+.|++
T Consensus 248 L~l~~n-~l~~~~~-~~---~l~~L~~L~l~~-n~l~~~~---~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L 316 (466)
T 1o6v_A 248 LDLANN-QISNLAP-LS---GLTKLTELKLGA-NQISNIS---P-LAGLTALTNLELNEN-QLEDISPISNLKNLTYLTL 316 (466)
T ss_dssp EECCSS-CCCCCGG-GT---TCTTCSEEECCS-SCCCCCG---G-GTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEEC
T ss_pred EECCCC-ccccchh-hh---cCCCCCEEECCC-CccCccc---c-ccCCCccCeEEcCCC-cccCchhhcCCCCCCEEEC
Confidence 665554 3333332 11 345555555554 2333333 1 444445555555442 2333332223344444444
Q ss_pred cCC
Q 045261 164 FNC 166 (227)
Q Consensus 164 ~~c 166 (227)
++|
T Consensus 317 ~~n 319 (466)
T 1o6v_A 317 YFN 319 (466)
T ss_dssp CSS
T ss_pred cCC
Confidence 443
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.51 E-value=3.3e-13 Score=114.13 Aligned_cols=166 Identities=18% Similarity=0.223 Sum_probs=80.0
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+++|+.|++++|. +..++. ++.+++|++|+++++. +..++....+++|+.|++ +++ .+. ...+ +..+++|++
T Consensus 198 l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l-~~n-~l~-~~~~--~~~l~~L~~ 269 (466)
T 1o6v_A 198 LTNLESLIATNNQ-ISDITP-LGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDL-ANN-QIS-NLAP--LSGLTKLTE 269 (466)
T ss_dssp CTTCSEEECCSSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEEC-CSS-CCC-CCGG--GTTCTTCSE
T ss_pred CCCCCEEEecCCc-cccccc-ccccCCCCEEECCCCC-cccchhhhcCCCCCEEEC-CCC-ccc-cchh--hhcCCCCCE
Confidence 4667777777754 333332 5556666666666653 444433345566666666 553 232 1111 455566666
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeee
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCI 163 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i 163 (227)
|+++++ .+..++. +. .+++|+.|++++ +.+..++ .+..+++|++|++++| .+..++.....++|+.|++
T Consensus 270 L~l~~n-~l~~~~~-~~---~l~~L~~L~L~~-n~l~~~~----~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l 338 (466)
T 1o6v_A 270 LKLGAN-QISNISP-LA---GLTALTNLELNE-NQLEDIS----PISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFF 338 (466)
T ss_dssp EECCSS-CCCCCGG-GT---TCTTCSEEECCS-SCCSCCG----GGGGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEEC
T ss_pred EECCCC-ccCcccc-cc---CCCccCeEEcCC-CcccCch----hhcCCCCCCEEECcCC-cCCCchhhccCccCCEeEC
Confidence 666654 4444443 21 455555555555 2333333 1445555555555553 2333322233444555555
Q ss_pred cCCCCCCCCCCCCCCCCCcEEeecCC
Q 045261 164 FNCPNLTSLPKVGLPSSLLELTIFDC 189 (227)
Q Consensus 164 ~~c~~l~~~~~~~~~~~L~~L~l~~c 189 (227)
++| .++.++....+++|+.|++++|
T Consensus 339 ~~n-~l~~~~~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 339 YNN-KVSDVSSLANLTNINWLSAGHN 363 (466)
T ss_dssp CSS-CCCCCGGGTTCTTCCEEECCSS
T ss_pred CCC-ccCCchhhccCCCCCEEeCCCC
Confidence 444 2233332233444444444444
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.4e-13 Score=113.88 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=28.4
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEe
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAI 59 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l 59 (227)
+++|+.|++++|. ++.++ ++.+++|++|+++++..+..++ ...+++|+.|++
T Consensus 126 l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l 177 (457)
T 3bz5_A 126 NPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDC 177 (457)
T ss_dssp CTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEEC
T ss_pred CCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCcccccc-cccCCcCCEEEC
Confidence 4566777776643 44443 5556666666666654444442 234555555555
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.7e-14 Score=118.43 Aligned_cols=171 Identities=9% Similarity=0.057 Sum_probs=92.2
Q ss_pred CCCccEEEeccCCCCCcC-CcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhc---------
Q 045261 4 PESISSVEIRRCEKLGAL-PSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQW--------- 73 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~--------- 73 (227)
+++|+.|++++|. ++.+ |..+..+++|++|++++|. +...++...+++|+.|++ +++ .+. .+++.
T Consensus 33 ~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~L-s~N-~l~-~l~~~~~L~~L~L~ 107 (487)
T 3oja_A 33 AWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDL-NNN-YVQ-ELLVGPSIETLHAA 107 (487)
T ss_dssp GGGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEEC-CSS-EEE-EEEECTTCCEEECC
T ss_pred CCCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEe-cCC-cCC-CCCCCCCcCEEECc
Confidence 4589999999975 5554 4788999999999999975 544444567888999998 664 443 11110
Q ss_pred -------ccccCCccceEEeccCCCCCcc-CccCcCCCCCCccceEEEecCCCccc-cCCCCCCcc-CCCCccEEeecCC
Q 045261 74 -------GLHRLTSLRWLLIERCDESECF-PDGMMGMTLPTSLVHLNIVEFQKLKN-LSSSSSGFH-SLTSLRRLLIQDC 143 (227)
Q Consensus 74 -------~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~l~-~l~~L~~L~l~~c 143 (227)
....+++|++|++++| .+..+ |..++ .+++|+.|+++++ .+.. .| ..+. .+++|++|+++++
T Consensus 108 ~N~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~---~l~~L~~L~Ls~N-~l~~~~~---~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 108 NNNISRVSCSRGQGKKNIYLANN-KITMLRDLDEG---CRSRVQYLDLKLN-EIDTVNF---AELAASSDTLEHLNLQYN 179 (487)
T ss_dssp SSCCCCEEECCCSSCEEEECCSS-CCCSGGGBCGG---GGSSEEEEECTTS-CCCEEEG---GGGGGGTTTCCEEECTTS
T ss_pred CCcCCCCCccccCCCCEEECCCC-CCCCCCchhhc---CCCCCCEEECCCC-CCCCcCh---HHHhhhCCcccEEecCCC
Confidence 0112334444444444 22222 22222 3455555555553 3322 22 3332 4555555555552
Q ss_pred CCCccCCCCCCCCccceeeecCCCCCCCCCC-CCCCCCCcEEeecCC
Q 045261 144 PNLTSLPKVGLPSSLLDLCIFNCPNLTSLPK-VGLPSSLLELTIFDC 189 (227)
Q Consensus 144 ~~l~~~~~~~~~~~L~~l~i~~c~~l~~~~~-~~~~~~L~~L~l~~c 189 (227)
.+..++....+++|+.|+++++. ++.++. ...+++|+.|+++++
T Consensus 180 -~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 180 -FIYDVKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN 224 (487)
T ss_dssp -CCCEEECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS
T ss_pred -ccccccccccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCC
Confidence 34444443345555555555543 333332 122455555555554
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-12 Score=114.71 Aligned_cols=174 Identities=15% Similarity=0.097 Sum_probs=104.4
Q ss_pred CCCccEEEeccCCC-CCcCCc-ccC--CCCCcceEeecCCCCCcccCC-C-CCCCCcceeEeccCcccccccchhccccc
Q 045261 4 PESISSVEIRRCEK-LGALPS-DMH--KLNSLQDLDIRECPSIVSFPE-E-GFPTNLTSLAIGEDMKMLYKGLVQWGLHR 77 (227)
Q Consensus 4 ~~~L~~L~l~~~~~-l~~lp~-~~~--~l~~L~~L~l~~c~~l~~~~~-~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~ 77 (227)
+++|+.|++++|.. +..++. .+. ..++|+.|+++++. +..+++ . ..+++|+.|++ +++ .+.+.+++..+..
T Consensus 352 l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L-~~N-~l~~~~~~~~~~~ 428 (680)
T 1ziw_A 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK-ISKIESDAFSWLGHLEVLDL-GLN-EIGQELTGQEWRG 428 (680)
T ss_dssp CTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSC-CCEECTTTTTTCTTCCEEEC-CSS-CCEEECCSGGGTT
T ss_pred ccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCC-CCeEChhhhhCCCCCCEEeC-CCC-cCccccCcccccC
Confidence 68999999999753 233332 222 23689999999986 555543 3 78899999999 774 4443444456778
Q ss_pred CCccceEEeccCCCCCcc---------------------------CccCcCCCCCCccceEEEecCCCccccCCCCCCcc
Q 045261 78 LTSLRWLLIERCDESECF---------------------------PDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFH 130 (227)
Q Consensus 78 l~~L~~L~l~~~~~l~~l---------------------------~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~ 130 (227)
+++|++|++++|. +..+ |..+. .+++|+.|++++ +.+..++ ...+.
T Consensus 429 l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~---~l~~L~~L~Ls~-N~l~~i~--~~~~~ 501 (680)
T 1ziw_A 429 LENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ---PLRNLTILDLSN-NNIANIN--DDMLE 501 (680)
T ss_dssp CTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT---TCTTCCEEECCS-SCCCCCC--TTTTT
T ss_pred cccccEEecCCCC-cceeChhhhhcCcccccchhccccccccccCCcccc---cCCCCCEEECCC-CCCCcCC--hhhhc
Confidence 8888888888763 3222 22222 345566666655 3444444 24455
Q ss_pred CCCCccEEeecCCCCCccCCC----------CCCCCccceeeecCCCCCCCCCCC--CCCCCCcEEeecCC
Q 045261 131 SLTSLRRLLIQDCPNLTSLPK----------VGLPSSLLDLCIFNCPNLTSLPKV--GLPSSLLELTIFDC 189 (227)
Q Consensus 131 ~l~~L~~L~l~~c~~l~~~~~----------~~~~~~L~~l~i~~c~~l~~~~~~--~~~~~L~~L~l~~c 189 (227)
++++|++|+++++ .+..++. ....++|+.|+++++ .++.+|.. ..+++|++|+++++
T Consensus 502 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N 570 (680)
T 1ziw_A 502 GLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLN 570 (680)
T ss_dssp TCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCCC
Confidence 6666666666663 3443311 123456666676664 34455543 33677777777654
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.5e-13 Score=102.95 Aligned_cols=146 Identities=23% Similarity=0.289 Sum_probs=105.4
Q ss_pred cEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCccceEE
Q 045261 8 SSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLL 85 (227)
Q Consensus 8 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~ 85 (227)
+.++.++ ..++.+|..+. ++|++|+++++. +..++.. ..+++|+.|++ ++ +.+. .+++..+..+++|++|+
T Consensus 22 ~~v~c~~-~~l~~ip~~~~--~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L-~~-N~l~-~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 22 TTVDCRS-KRHASVPAGIP--TNAQILYLHDNQ-ITKLEPGVFDSLINLKELYL-GS-NQLG-ALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp TEEECTT-SCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC-CS-SCCC-CCCTTTTTTCTTCCEEE
T ss_pred CEeEccC-CCcCccCCCCC--CCCCEEEcCCCc-cCccCHHHhhCccCCcEEEC-CC-CCCC-CcChhhcccCCCcCEEE
Confidence 4566666 45677776443 788888888864 5555433 67788899988 66 4454 55555578888899999
Q ss_pred eccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCccceeee
Q 045261 86 IERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLLDLCI 163 (227)
Q Consensus 86 l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l~i 163 (227)
++++ .++.++.... ..+++|+.|++++ +.+..+| ..+..+++|++|++++ +.+..++.. ...++|+.|++
T Consensus 95 Ls~N-~l~~l~~~~~--~~l~~L~~L~Ls~-N~l~~lp---~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 95 LGTN-QLTVLPSAVF--DRLVHLKELFMCC-NKLTELP---RGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp CCSS-CCCCCCTTTT--TTCTTCCEEECCS-SCCCSCC---TTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCC-cCCccChhHh--CcchhhCeEeccC-CcccccC---cccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEe
Confidence 8887 6777765432 1678889999887 6777888 7788888999999988 577777754 34578888888
Q ss_pred cCCCC
Q 045261 164 FNCPN 168 (227)
Q Consensus 164 ~~c~~ 168 (227)
++++.
T Consensus 167 ~~N~~ 171 (229)
T 3e6j_A 167 FGNPW 171 (229)
T ss_dssp TTSCB
T ss_pred eCCCc
Confidence 87653
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.6e-13 Score=114.05 Aligned_cols=152 Identities=20% Similarity=0.200 Sum_probs=66.4
Q ss_pred CCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccc-cchhcccccCCccceEEeccCCCCCc-cCccCcCCC
Q 045261 27 KLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYK-GLVQWGLHRLTSLRWLLIERCDESEC-FPDGMMGMT 103 (227)
Q Consensus 27 ~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~-~~~~~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~~~ 103 (227)
.+++|++|+++++......+.. ..+++|+.|++ +++ .+.+ ...+..++.+++|++|+++++ .+.. +|.... .
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L-~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~~--~ 396 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLIL-QMN-QLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKGDC--S 396 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEEC-CSS-CCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGCSC--C
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEc-cCC-ccCccccchHHHhhCCCCCEEECCCC-cCCcccccchh--c
Confidence 4444555555444322212222 44455555555 332 2221 011123444555555555554 2222 443311 1
Q ss_pred CCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC-CCCCccceeeecCCCCCCCCCCC--CCCCC
Q 045261 104 LPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV-GLPSSLLDLCIFNCPNLTSLPKV--GLPSS 180 (227)
Q Consensus 104 ~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~l~i~~c~~l~~~~~~--~~~~~ 180 (227)
.+++|++|+++++.-...++ ..+. ++|++|++++| .++.+|.. ...++|++|+++++ .++.+|.. ..+++
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~---~~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~ 469 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIF---RCLP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTS 469 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGG---GSCC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred cCccCCEEECcCCCCCcchh---hhhc--ccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCc
Confidence 34455555555533223333 2221 45555555553 44555542 23455666666654 34455542 22456
Q ss_pred CcEEeecCCc
Q 045261 181 LLELTIFDCP 190 (227)
Q Consensus 181 L~~L~l~~c~ 190 (227)
|++|++++++
T Consensus 470 L~~L~l~~N~ 479 (520)
T 2z7x_B 470 LQKIWLHTNP 479 (520)
T ss_dssp CCEEECCSSC
T ss_pred ccEEECcCCC
Confidence 6666666543
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.7e-13 Score=101.14 Aligned_cols=160 Identities=23% Similarity=0.291 Sum_probs=96.5
Q ss_pred EEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCccceEEe
Q 045261 9 SVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLI 86 (227)
Q Consensus 9 ~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l 86 (227)
.++.++ ..+..+|..+ .++|++|+++++. +..++.. ..+++|++|++ ++ +.++ .+++..+..+++|++|++
T Consensus 11 ~v~c~~-~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l-~~-n~l~-~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 11 TVECYS-QGRTSVPTGI--PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYL-GG-NKLQ-SLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp EEECCS-SCCSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEEC-CS-SCCC-CCCTTTTTTCTTCCEEEC
T ss_pred EEEecC-CCccCCCCCC--CCCCcEEEcCCCc-cCcCChhhhcccccCcEEEC-CC-CccC-ccChhhcCCCCCcCEEEC
Confidence 344444 3455566433 3567777777753 5555543 56777777777 55 4454 444444667777777777
Q ss_pred ccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCccceeeec
Q 045261 87 ERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLLDLCIF 164 (227)
Q Consensus 87 ~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l~i~ 164 (227)
+++ .+..++.... ..+++|++|++++ +.+..++ ...+..+++|++|++++ +.+..++.. ...++|++|+++
T Consensus 84 s~n-~l~~~~~~~~--~~l~~L~~L~L~~-N~l~~~~--~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 84 STN-QLQSLPNGVF--DKLTQLKELALNT-NQLQSLP--DGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLH 156 (208)
T ss_dssp CSS-CCCCCCTTTT--TTCTTCCEEECCS-SCCCCCC--TTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCC-cCCccCHhHh--cCccCCCEEEcCC-CcCcccC--HhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEec
Confidence 776 5556655431 1567777777776 4566665 34466777778887777 356666553 345677777777
Q ss_pred CCCCCCCCCCCCCCCCCcEEeecC
Q 045261 165 NCPNLTSLPKVGLPSSLLELTIFD 188 (227)
Q Consensus 165 ~c~~l~~~~~~~~~~~L~~L~l~~ 188 (227)
+++.. +.+++|+.|+++.
T Consensus 157 ~N~~~------~~~~~l~~L~~~~ 174 (208)
T 2o6s_A 157 DNPWD------CTCPGIRYLSEWI 174 (208)
T ss_dssp SCCBC------CCTTTTHHHHHHH
T ss_pred CCCee------cCCCCHHHHHHHH
Confidence 76432 2234555555553
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.6e-12 Score=112.20 Aligned_cols=75 Identities=32% Similarity=0.502 Sum_probs=37.1
Q ss_pred CCccEEeecCCCCCccCCCCCCCCccceeeecCCCCCCCCCCCCCCCCCcEEeecCCchhhhhhcccCCCCcccccccce
Q 045261 133 TSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCPKLRKECKRDKGKGWSKIANIPM 212 (227)
Q Consensus 133 ~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~ 212 (227)
++|++|++++ +.++.+| ..+++|+.|+++++ .++.+|. .+++|++|++++|. ++ ..+..+..+.++..
T Consensus 221 ~~L~~L~Ls~-N~L~~lp--~~l~~L~~L~Ls~N-~L~~lp~--~~~~L~~L~Ls~N~-L~-----~lp~~l~~l~~L~~ 288 (622)
T 3g06_A 221 SGLKELIVSG-NRLTSLP--VLPSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRNQ-LT-----RLPESLIHLSSETT 288 (622)
T ss_dssp TTCCEEECCS-SCCSCCC--CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CC-----SCCGGGGGSCTTCE
T ss_pred CCCCEEEccC-CccCcCC--CCCCcCcEEECCCC-CCCcCCc--ccccCcEEeCCCCC-CC-----cCCHHHhhccccCE
Confidence 4455555555 2444444 23455555665554 3445554 45566666666552 22 11223444555666
Q ss_pred EEeccCC
Q 045261 213 FLIDDTD 219 (227)
Q Consensus 213 ~~~~~~~ 219 (227)
+.+.+..
T Consensus 289 L~L~~N~ 295 (622)
T 3g06_A 289 VNLEGNP 295 (622)
T ss_dssp EECCSCC
T ss_pred EEecCCC
Confidence 6665543
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.9e-14 Score=109.76 Aligned_cols=160 Identities=19% Similarity=0.207 Sum_probs=90.0
Q ss_pred EEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceEEecc
Q 045261 9 SVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIER 88 (227)
Q Consensus 9 ~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 88 (227)
.++++++ .++.++ .+..+++|++|+++++ .+..++....+++|+.|++ ++ +.+. .+.+ +..+++|++|++++
T Consensus 23 ~l~l~~~-~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~L-~~-N~i~-~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 23 KQNLGKQ-SVTDLV-SQKELSGVQNFNGDNS-NIQSLAGMQFFTNLKELHL-SH-NQIS-DLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHTCS-CTTSEE-CHHHHTTCSEEECTTS-CCCCCTTGGGCTTCCEEEC-CS-SCCC-CCGG--GTTCSSCCEEECCS
T ss_pred HHHhcCC-Cccccc-chhhcCcCcEEECcCC-CcccchHHhhCCCCCEEEC-CC-CccC-CChh--hccCCCCCEEECCC
Confidence 3344442 334443 3556666667777665 3555553355666777776 54 3343 2222 56666677777766
Q ss_pred CCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeeecCCCC
Q 045261 89 CDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIFNCPN 168 (227)
Q Consensus 89 ~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i~~c~~ 168 (227)
+ .++.++... . ++|+.|++++ +.+..++ .+..+++|++|++++ +.++.++....+++|++|+++++.
T Consensus 95 N-~l~~l~~~~----~-~~L~~L~L~~-N~l~~~~----~l~~l~~L~~L~Ls~-N~i~~~~~l~~l~~L~~L~L~~N~- 161 (263)
T 1xeu_A 95 N-RLKNLNGIP----S-ACLSRLFLDN-NELRDTD----SLIHLKNLEILSIRN-NKLKSIVMLGFLSKLEVLDLHGNE- 161 (263)
T ss_dssp S-CCSCCTTCC----C-SSCCEEECCS-SCCSBSG----GGTTCTTCCEEECTT-SCCCBCGGGGGCTTCCEEECTTSC-
T ss_pred C-ccCCcCccc----c-CcccEEEccC-CccCCCh----hhcCcccccEEECCC-CcCCCChHHccCCCCCEEECCCCc-
Confidence 5 555555432 2 6667777766 3555543 356666777777766 345555543445666667666643
Q ss_pred CCCCCCCCCCCCCcEEeecCC
Q 045261 169 LTSLPKVGLPSSLLELTIFDC 189 (227)
Q Consensus 169 l~~~~~~~~~~~L~~L~l~~c 189 (227)
+..+.....+++|+.|+++++
T Consensus 162 i~~~~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 162 ITNTGGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CCBCTTSTTCCCCCEEEEEEE
T ss_pred CcchHHhccCCCCCEEeCCCC
Confidence 333333344566777776664
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.9e-13 Score=114.48 Aligned_cols=177 Identities=17% Similarity=0.146 Sum_probs=101.9
Q ss_pred CCCCCcceEeecCCCCCccc---CCC-CCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCc--cC
Q 045261 26 HKLNSLQDLDIRECPSIVSF---PEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPD--GM 99 (227)
Q Consensus 26 ~~l~~L~~L~l~~c~~l~~~---~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~ 99 (227)
..+++|++|+++++. +... +.. ..+++|+.|++ +++. +. ..++ .+..+++|++|+++++ .+...+. .+
T Consensus 344 ~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l-~~n~-l~-~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~ 417 (570)
T 2z63_A 344 VDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDL-SFNG-VI-TMSS-NFLGLEQLEHLDFQHS-NLKQMSEFSVF 417 (570)
T ss_dssp CBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEEC-CSCS-EE-EEEE-EEETCTTCCEEECTTS-EEESCTTSCTT
T ss_pred ccCCCCCEEeCcCCc-cCccccccccccccCccCEEEC-CCCc-cc-cccc-cccccCCCCEEEccCC-ccccccchhhh
Confidence 344555555555543 2222 111 34556666666 5432 22 2222 2566677777777765 3333322 22
Q ss_pred cCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCC-ccCCCC-CCCCccceeeecCCCCCCCCCC-CC
Q 045261 100 MGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNL-TSLPKV-GLPSSLLDLCIFNCPNLTSLPK-VG 176 (227)
Q Consensus 100 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l-~~~~~~-~~~~~L~~l~i~~c~~l~~~~~-~~ 176 (227)
. .+++|++|++++|......+ ..+.++++|++|++++|.-. ..+|.. ...++|++|++++|...+..+. ..
T Consensus 418 ~---~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 491 (570)
T 2z63_A 418 L---SLRNLIYLDISHTHTRVAFN---GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491 (570)
T ss_dssp T---TCTTCCEEECTTSCCEECCT---TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred h---cCCCCCEEeCcCCcccccch---hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhh
Confidence 2 57788888888754444445 67778888888888886432 235542 4567888889888764443343 24
Q ss_pred CCCCCcEEeecCCchhhhhhcccCCCCcccccccceEEeccCC
Q 045261 177 LPSSLLELTIFDCPKLRKECKRDKGKGWSKIANIPMFLIDDTD 219 (227)
Q Consensus 177 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (227)
.+++|++|++++|. ++ ......+..+.++..+.+.+..
T Consensus 492 ~l~~L~~L~l~~n~-l~----~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 492 SLSSLQVLNMASNQ-LK----SVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TCTTCCEEECCSSC-CS----CCCTTTTTTCTTCCEEECCSSC
T ss_pred cccCCCEEeCCCCc-CC----CCCHHHhhcccCCcEEEecCCc
Confidence 57889999998874 22 1122234556667777776653
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.45 E-value=5e-12 Score=106.66 Aligned_cols=157 Identities=26% Similarity=0.387 Sum_probs=103.2
Q ss_pred CCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceE
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWL 84 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L 84 (227)
++|++|++++| .++.+| .++++++|++|+++++. +..+|. ...+|++|++ +++ .++ .+ + .++.+++|++|
T Consensus 131 ~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~--~~~~L~~L~L-~~n-~l~-~l-~-~~~~l~~L~~L 200 (454)
T 1jl5_A 131 PLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNNS-LKKLPD--LPPSLEFIAA-GNN-QLE-EL-P-ELQNLPFLTAI 200 (454)
T ss_dssp TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSC-CSCCCC--CCTTCCEEEC-CSS-CCS-SC-C-CCTTCTTCCEE
T ss_pred CCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCCCc-CcccCC--CcccccEEEC-cCC-cCC-cC-c-cccCCCCCCEE
Confidence 57777787775 355577 47888888888888764 555654 3468888888 663 454 23 3 47788888888
Q ss_pred EeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeeec
Q 045261 85 LIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIF 164 (227)
Q Consensus 85 ~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i~ 164 (227)
+++++ .+..+|. .+++|++|+++++ .+..+| . +..+++|++|++++ +.+..+|. ..++|++|+++
T Consensus 201 ~l~~N-~l~~l~~------~~~~L~~L~l~~n-~l~~lp---~-~~~l~~L~~L~l~~-N~l~~l~~--~~~~L~~L~l~ 265 (454)
T 1jl5_A 201 YADNN-SLKKLPD------LPLSLESIVAGNN-ILEELP---E-LQNLPFLTTIYADN-NLLKTLPD--LPPSLEALNVR 265 (454)
T ss_dssp ECCSS-CCSSCCC------CCTTCCEEECCSS-CCSSCC---C-CTTCTTCCEEECCS-SCCSSCCS--CCTTCCEEECC
T ss_pred ECCCC-cCCcCCC------CcCcccEEECcCC-cCCccc---c-cCCCCCCCEEECCC-CcCCcccc--cccccCEEECC
Confidence 88876 5555654 2357888888874 566676 3 67788888888887 45666664 34667777777
Q ss_pred CCCCCCCCCCCCCCCCCcEEeecCC
Q 045261 165 NCPNLTSLPKVGLPSSLLELTIFDC 189 (227)
Q Consensus 165 ~c~~l~~~~~~~~~~~L~~L~l~~c 189 (227)
++. ++.+|. .+++|++|++++|
T Consensus 266 ~N~-l~~l~~--~~~~L~~L~ls~N 287 (454)
T 1jl5_A 266 DNY-LTDLPE--LPQSLTFLDVSEN 287 (454)
T ss_dssp SSC-CSCCCC--CCTTCCEEECCSS
T ss_pred CCc-ccccCc--ccCcCCEEECcCC
Confidence 654 333443 2345555555544
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.2e-12 Score=97.61 Aligned_cols=144 Identities=17% Similarity=0.263 Sum_probs=88.2
Q ss_pred EEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCccceEEe
Q 045261 9 SVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLI 86 (227)
Q Consensus 9 ~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l 86 (227)
.++.++ ..++++|..+. ++|+.|+++++ .+..++.. ..+++|+.|++ ++ +.+. .+.+..+..+++|++|++
T Consensus 15 ~v~c~~-~~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~L-s~-N~i~-~~~~~~~~~l~~L~~L~L 87 (220)
T 2v9t_B 15 IVDCRG-KGLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDL-SN-NQIS-ELAPDAFQGLRSLNSLVL 87 (220)
T ss_dssp EEECTT-SCCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEEC-CS-SCCC-EECTTTTTTCSSCCEEEC
T ss_pred EEEcCC-CCcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEEC-CC-CcCC-CcCHHHhhCCcCCCEEEC
Confidence 455555 35666665443 56777777775 35555543 56677777777 55 3444 344455777777777777
Q ss_pred ccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCccceeeec
Q 045261 87 ERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLLDLCIF 164 (227)
Q Consensus 87 ~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l~i~ 164 (227)
+++ .++.+|.... ..+++|+.|++++ +.+..++ ...+..+++|++|++++ +.+..++.. ...++|++|+++
T Consensus 88 s~N-~l~~l~~~~f--~~l~~L~~L~L~~-N~l~~~~--~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 88 YGN-KITELPKSLF--EGLFSLQLLLLNA-NKINCLR--VDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLA 160 (220)
T ss_dssp CSS-CCCCCCTTTT--TTCTTCCEEECCS-SCCCCCC--TTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCC-cCCccCHhHc--cCCCCCCEEECCC-CCCCEeC--HHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeC
Confidence 776 6666665432 1467777777777 4555554 36677777777777777 456665543 223455555555
Q ss_pred CC
Q 045261 165 NC 166 (227)
Q Consensus 165 ~c 166 (227)
++
T Consensus 161 ~N 162 (220)
T 2v9t_B 161 QN 162 (220)
T ss_dssp SS
T ss_pred CC
Confidence 43
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.7e-12 Score=97.81 Aligned_cols=147 Identities=27% Similarity=0.316 Sum_probs=104.5
Q ss_pred cceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCccce
Q 045261 31 LQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVH 110 (227)
Q Consensus 31 L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~ 110 (227)
.+.++.++. .+..+|.. ..++|+.|++ ++ +.+. .+.+..+..+++|++|+++++ .+..++.... ..+++|+.
T Consensus 21 ~~~v~c~~~-~l~~ip~~-~~~~L~~L~L-s~-n~i~-~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~--~~l~~L~~ 92 (229)
T 3e6j_A 21 GTTVDCRSK-RHASVPAG-IPTNAQILYL-HD-NQIT-KLEPGVFDSLINLKELYLGSN-QLGALPVGVF--DSLTQLTV 92 (229)
T ss_dssp TTEEECTTS-CCSSCCSC-CCTTCSEEEC-CS-SCCC-CCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT--TTCTTCCE
T ss_pred CCEeEccCC-CcCccCCC-CCCCCCEEEc-CC-CccC-ccCHHHhhCccCCcEEECCCC-CCCCcChhhc--ccCCCcCE
Confidence 456666553 46667763 5588888988 66 4554 444556788888999998887 6677775432 26788889
Q ss_pred EEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC-CCCCccceeeecCCCCCCCCCCC--CCCCCCcEEeec
Q 045261 111 LNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV-GLPSSLLDLCIFNCPNLTSLPKV--GLPSSLLELTIF 187 (227)
Q Consensus 111 L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~l~i~~c~~l~~~~~~--~~~~~L~~L~l~ 187 (227)
|++++ +.+..++ ...+..+++|++|++++ +.+..+|.. ...++|++|+++++ .++.++.. ..+++|+.|++.
T Consensus 93 L~Ls~-N~l~~l~--~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 93 LDLGT-NQLTVLP--SAVFDRLVHLKELFMCC-NKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp EECCS-SCCCCCC--TTTTTTCTTCCEEECCS-SCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred EECCC-CcCCccC--hhHhCcchhhCeEeccC-CcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEee
Confidence 99888 5777776 35567888899999888 567777764 45678888888875 45666643 336888888888
Q ss_pred CCc
Q 045261 188 DCP 190 (227)
Q Consensus 188 ~c~ 190 (227)
+++
T Consensus 168 ~N~ 170 (229)
T 3e6j_A 168 GNP 170 (229)
T ss_dssp TSC
T ss_pred CCC
Confidence 754
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.4e-12 Score=114.62 Aligned_cols=108 Identities=16% Similarity=0.116 Sum_probs=82.1
Q ss_pred CCCCccEEEeccCCCCCcC-CcccCCCCCcceEeecCCCCCccc-CCC-CCCCCcceeEeccCcccccccch-hcccccC
Q 045261 3 LPESISSVEIRRCEKLGAL-PSDMHKLNSLQDLDIRECPSIVSF-PEE-GFPTNLTSLAIGEDMKMLYKGLV-QWGLHRL 78 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~~-~~~-~~l~~L~~L~l~~~~~~l~~~~~-~~~~~~l 78 (227)
-+++|+.|++++|.....+ |..++++++|++|+++++. +..+ |.. ..+++|++|++ +++ .+.+..+ ...++.+
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L-s~n-~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRL-YFC-GLSDAVLKDGYFRNL 122 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCCCEEC-TTC-CCSSCCSTTCCCSSC
T ss_pred ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCCcccCEeeC-cCC-CCCcccccCcccccc
Confidence 4689999999998777777 6789999999999999975 5555 444 88999999999 775 4543222 2247899
Q ss_pred CccceEEeccCCCCCccC--ccCcCCCCCCccceEEEecCC
Q 045261 79 TSLRWLLIERCDESECFP--DGMMGMTLPTSLVHLNIVEFQ 117 (227)
Q Consensus 79 ~~L~~L~l~~~~~l~~l~--~~~~~~~~~~~L~~L~l~~~~ 117 (227)
++|++|+++++ .+..++ ..+. .+++|++|+++++.
T Consensus 123 ~~L~~L~Ls~N-~l~~~~~~~~~~---~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 123 KALTRLDLSKN-QIRSLYLHPSFG---KLNSLKSIDFSSNQ 159 (844)
T ss_dssp SSCCEEEEESC-CCCCCCCCGGGG---TCSSCCEEEEESSC
T ss_pred CCCCEEECCCC-cccccccchhHh---hCCCCCEEECCCCc
Confidence 99999999997 454443 3344 78899999999843
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.44 E-value=5.4e-13 Score=97.42 Aligned_cols=137 Identities=17% Similarity=0.240 Sum_probs=99.1
Q ss_pred CCCCCccEEEeccCCCC-CcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 2 RLPESISSVEIRRCEKL-GALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 2 ~~~~~L~~L~l~~~~~l-~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
..+++|+.|++++|... +.+|..+..+++|++|++++|. +..+.....+++|+.|++ +++ .+.+. .+..+..+++
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L-s~N-~l~~~-~~~~~~~l~~ 96 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLEL-SEN-RIFGG-LDMLAEKLPN 96 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEE-ESC-CCCSC-CCHHHHHCTT
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEEC-cCC-cCchH-HHHHHhhCCC
Confidence 35678999999987533 3788778888999999998875 666633377888999998 664 45422 3444666888
Q ss_pred cceEEeccCCCCCccC--ccCcCCCCCCccceEEEecCCCccccCCCCC----CccCCCCccEEeecCCCCCccCCC
Q 045261 81 LRWLLIERCDESECFP--DGMMGMTLPTSLVHLNIVEFQKLKNLSSSSS----GFHSLTSLRRLLIQDCPNLTSLPK 151 (227)
Q Consensus 81 L~~L~l~~~~~l~~l~--~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~----~l~~l~~L~~L~l~~c~~l~~~~~ 151 (227)
|++|++++| .++.++ ..+. .+++|+.|++++ +.+..++ . .+..+++|++|++++| .+.++|.
T Consensus 97 L~~L~Ls~N-~l~~~~~~~~l~---~l~~L~~L~l~~-N~l~~~~---~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 97 LTHLNLSGN-KLKDISTLEPLK---KLECLKSLDLFN-CEVTNLN---DYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp CCEEECBSS-SCCSSGGGGGGS---SCSCCCEEECCS-SGGGTST---THHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred CCEEeccCC-ccCcchhHHHHh---cCCCCCEEEeeC-CcCcchH---HHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 999999887 677665 3443 678888998887 5666776 4 6778888888888885 4555554
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.1e-13 Score=108.02 Aligned_cols=174 Identities=11% Similarity=0.086 Sum_probs=123.3
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC------------------CCCCCcceeEeccCcc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE------------------GFPTNLTSLAIGEDMK 64 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~------------------~~l~~L~~L~l~~~~~ 64 (227)
-+++|+.|++++|. +...+. +..+++|++|+++++. +..++.. ..+++|+.|++ ++ +
T Consensus 56 ~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l-~~-N 130 (317)
T 3o53_A 56 PFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYL-AN-N 130 (317)
T ss_dssp TCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSSE-EEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEEC-CS-S
T ss_pred CCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCCc-cccccCCCCcCEEECCCCccCCcCccccCCCCEEEC-CC-C
Confidence 35788888888864 433333 7777778888877753 3332210 24577888888 65 4
Q ss_pred cccccchhcccccCCccceEEeccCCCCCccCc-cCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCC
Q 045261 65 MLYKGLVQWGLHRLTSLRWLLIERCDESECFPD-GMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDC 143 (227)
Q Consensus 65 ~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c 143 (227)
.+. ...+..+..+++|++|+++++ .+..++. .+. ..+++|++|++++ +.+..++ . ...+++|++|++++
T Consensus 131 ~l~-~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~--~~l~~L~~L~L~~-N~l~~~~---~-~~~l~~L~~L~Ls~- 200 (317)
T 3o53_A 131 KIT-MLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELA--ASSDTLEHLNLQY-NFIYDVK---G-QVVFAKLKTLDLSS- 200 (317)
T ss_dssp CCC-SGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGG--GGTTTCCEEECTT-SCCCEEE---C-CCCCTTCCEEECCS-
T ss_pred CCC-CccchhhhccCCCCEEECCCC-CCCcccHHHHh--hccCcCCEEECCC-CcCcccc---c-ccccccCCEEECCC-
Confidence 454 445556788999999999998 5655543 331 1468999999998 5677776 2 33589999999999
Q ss_pred CCCccCCCC-CCCCccceeeecCCCCCCCCCCC-CCCCCCcEEeecCCchh
Q 045261 144 PNLTSLPKV-GLPSSLLDLCIFNCPNLTSLPKV-GLPSSLLELTIFDCPKL 192 (227)
Q Consensus 144 ~~l~~~~~~-~~~~~L~~l~i~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l 192 (227)
+.+..++.. ...++|++|+++++ .++.+|.. ..+++|+.|++++++..
T Consensus 201 N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 201 NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred CcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCcc
Confidence 567777654 45689999999997 45667653 45789999999998754
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.3e-12 Score=108.65 Aligned_cols=153 Identities=18% Similarity=0.118 Sum_probs=85.9
Q ss_pred CCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCccccccc-chhcccccCCccceEEeccCCCCCc-cCccCcCC
Q 045261 26 HKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKG-LVQWGLHRLTSLRWLLIERCDESEC-FPDGMMGM 102 (227)
Q Consensus 26 ~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~-~~~~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~~ 102 (227)
..+++|++|+++++......+.. ..+++|+.|++ ++ +.+.+. ..+..+..+++|++|+++++ .+.. +|....
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L-~~-N~l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~-- 424 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL-QR-NGLKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTC-- 424 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEEC-CS-SCCCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSSCCC--
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEEC-CC-CCcCCcccchhhhcCCCCCCEEECCCC-cCCCccChhhh--
Confidence 45566666666665422223333 55666777776 55 334311 11234566667777777766 3333 554422
Q ss_pred CCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC-CCCCccceeeecCCCCCCCCCCC--CCCC
Q 045261 103 TLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV-GLPSSLLDLCIFNCPNLTSLPKV--GLPS 179 (227)
Q Consensus 103 ~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~l~i~~c~~l~~~~~~--~~~~ 179 (227)
..+++|++|+++++.-...++ ..+. ++|++|+++++ .++.+|.. ...++|++|+++++. ++.+|.. ..++
T Consensus 425 ~~l~~L~~L~l~~n~l~~~~~---~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~ 497 (562)
T 3a79_B 425 AWAESILVLNLSSNMLTGSVF---RCLP--PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLT 497 (562)
T ss_dssp CCCTTCCEEECCSSCCCGGGG---SSCC--TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCT
T ss_pred cCcccCCEEECCCCCCCcchh---hhhc--CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCC
Confidence 145667777776644333343 2222 57777777773 56666653 345677777777753 4566653 3467
Q ss_pred CCcEEeecCCc
Q 045261 180 SLLELTIFDCP 190 (227)
Q Consensus 180 ~L~~L~l~~c~ 190 (227)
+|+.|++++++
T Consensus 498 ~L~~L~l~~N~ 508 (562)
T 3a79_B 498 SLQYIWLHDNP 508 (562)
T ss_dssp TCCCEECCSCC
T ss_pred CCCEEEecCCC
Confidence 77777777654
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-12 Score=104.49 Aligned_cols=146 Identities=18% Similarity=0.206 Sum_probs=118.8
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLR 82 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~ 82 (227)
.+++|+.|++++| .++.++. +.++++|++|+++++. +..++....+++|+.|++ +++ .+. .+ ..+..+++|+
T Consensus 66 ~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L-~~n-~i~-~~--~~l~~l~~L~ 137 (291)
T 1h6t_A 66 YLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSL-EHN-GIS-DI--NGLVHLPQLE 137 (291)
T ss_dssp GCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEEC-TTS-CCC-CC--GGGGGCTTCC
T ss_pred cCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCc-CCCChhhccCCCCCEEEC-CCC-cCC-CC--hhhcCCCCCC
Confidence 3689999999996 5666766 8999999999999974 666766688999999999 774 554 22 3578899999
Q ss_pred eEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceee
Q 045261 83 WLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLC 162 (227)
Q Consensus 83 ~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~ 162 (227)
+|+++++ .+..++ .+. .+++|+.|++++ +.+..++ . +..+++|++|++++ +.++.++.....++|+.|+
T Consensus 138 ~L~l~~n-~l~~~~-~l~---~l~~L~~L~L~~-N~l~~~~---~-l~~l~~L~~L~L~~-N~i~~l~~l~~l~~L~~L~ 206 (291)
T 1h6t_A 138 SLYLGNN-KITDIT-VLS---RLTKLDTLSLED-NQISDIV---P-LAGLTKLQNLYLSK-NHISDLRALAGLKNLDVLE 206 (291)
T ss_dssp EEECCSS-CCCCCG-GGG---GCTTCSEEECCS-SCCCCCG---G-GTTCTTCCEEECCS-SCCCBCGGGTTCTTCSEEE
T ss_pred EEEccCC-cCCcch-hhc---cCCCCCEEEccC-Cccccch---h-hcCCCccCEEECCC-CcCCCChhhccCCCCCEEE
Confidence 9999997 677774 333 689999999998 5777776 3 88999999999999 4788887656678999999
Q ss_pred ecCCC
Q 045261 163 IFNCP 167 (227)
Q Consensus 163 i~~c~ 167 (227)
+++++
T Consensus 207 l~~n~ 211 (291)
T 1h6t_A 207 LFSQE 211 (291)
T ss_dssp EEEEE
T ss_pred CcCCc
Confidence 99865
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-12 Score=105.05 Aligned_cols=175 Identities=19% Similarity=0.161 Sum_probs=128.9
Q ss_pred CCCCccEEEeccCCCCCcCC----cccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCccccccc-ch-hcc
Q 045261 3 LPESISSVEIRRCEKLGALP----SDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKG-LV-QWG 74 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp----~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~-~~-~~~ 74 (227)
-+++|+.|++++|...+..+ ..+..+++|++|+++++. +..++.. ..+++|++|++ +++.-.... .. ...
T Consensus 115 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L-s~N~l~~~~~~~~~~~ 192 (310)
T 4glp_A 115 TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDL-SDNPGLGERGLMAALC 192 (310)
T ss_dssp CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEEC-CSCTTCHHHHHHTTSC
T ss_pred cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCCCCEEEC-CCCCCccchhhhHHHh
Confidence 37899999999976544443 344579999999999975 5555543 68899999999 775433211 11 223
Q ss_pred cccCCccceEEeccCCCCCccCcc----CcCCCCCCccceEEEecCCCcccc-CCCCCCccCC---CCccEEeecCCCCC
Q 045261 75 LHRLTSLRWLLIERCDESECFPDG----MMGMTLPTSLVHLNIVEFQKLKNL-SSSSSGFHSL---TSLRRLLIQDCPNL 146 (227)
Q Consensus 75 ~~~l~~L~~L~l~~~~~l~~l~~~----~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~l---~~L~~L~l~~c~~l 146 (227)
++.+++|++|++++| .++.++.. +. .+++|++|++++ +.+..+ | ..+..+ ++|++|++++ +.+
T Consensus 193 ~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~---~l~~L~~L~Ls~-N~l~~~~p---~~~~~~~~~~~L~~L~Ls~-N~l 263 (310)
T 4glp_A 193 PHKFPAIQNLALRNT-GMETPTGVCAALAA---AGVQPHSLDLSH-NSLRATVN---PSAPRCMWSSALNSLNLSF-AGL 263 (310)
T ss_dssp TTSSCCCCSCBCCSS-CCCCHHHHHHHHHH---HTCCCSSEECTT-SCCCCCCC---SCCSSCCCCTTCCCEECCS-SCC
T ss_pred hhcCCCCCEEECCCC-CCCchHHHHHHHHh---cCCCCCEEECCC-CCCCccch---hhHHhccCcCcCCEEECCC-CCC
Confidence 468899999999998 66666542 22 568999999998 455554 6 555555 7999999999 578
Q ss_pred ccCCCCCCCCccceeeecCCCCCCCCCCCCCCCCCcEEeecCCc
Q 045261 147 TSLPKVGLPSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCP 190 (227)
Q Consensus 147 ~~~~~~~~~~~L~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~c~ 190 (227)
+.+|.. ..++|++|+++++. ++.+|....+++|++|++++++
T Consensus 264 ~~lp~~-~~~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 264 EQVPKG-LPAKLRVLDLSSNR-LNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CSCCSC-CCSCCSCEECCSCC-CCSCCCTTSCCCCSCEECSSTT
T ss_pred Cchhhh-hcCCCCEEECCCCc-CCCCchhhhCCCccEEECcCCC
Confidence 888874 45899999999865 5565655567999999999865
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-11 Score=104.58 Aligned_cols=158 Identities=23% Similarity=0.297 Sum_probs=95.8
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+++|+.|+++++ .++.+|.. +++|++|+++++ .+..++. ..++|++|++ +++ .++ .+ + .++.+++|++
T Consensus 90 ~~~L~~L~l~~n-~l~~lp~~---~~~L~~L~l~~n-~l~~l~~--~~~~L~~L~L-~~n-~l~-~l-p-~~~~l~~L~~ 157 (454)
T 1jl5_A 90 PPHLESLVASCN-SLTELPEL---PQSLKSLLVDNN-NLKALSD--LPPLLEYLGV-SNN-QLE-KL-P-ELQNSSFLKI 157 (454)
T ss_dssp CTTCSEEECCSS-CCSSCCCC---CTTCCEEECCSS-CCSCCCS--CCTTCCEEEC-CSS-CCS-SC-C-CCTTCTTCCE
T ss_pred cCCCCEEEccCC-cCCccccc---cCCCcEEECCCC-ccCcccC--CCCCCCEEEC-cCC-CCC-CC-c-ccCCCCCCCE
Confidence 456777777664 34445542 356777777765 3444443 2367888888 653 444 33 3 4777888888
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeee
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCI 163 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i 163 (227)
|+++++ .++.+|.. +++|++|++++ +.+..+| .++++++|++|+++++ .+..+|. ..++|++|++
T Consensus 158 L~l~~N-~l~~lp~~------~~~L~~L~L~~-n~l~~l~----~~~~l~~L~~L~l~~N-~l~~l~~--~~~~L~~L~l 222 (454)
T 1jl5_A 158 IDVDNN-SLKKLPDL------PPSLEFIAAGN-NQLEELP----ELQNLPFLTAIYADNN-SLKKLPD--LPLSLESIVA 222 (454)
T ss_dssp EECCSS-CCSCCCCC------CTTCCEEECCS-SCCSSCC----CCTTCTTCCEEECCSS-CCSSCCC--CCTTCCEEEC
T ss_pred EECCCC-cCcccCCC------cccccEEECcC-CcCCcCc----cccCCCCCCEEECCCC-cCCcCCC--CcCcccEEEC
Confidence 888876 56666642 35777777777 3555555 3667777777777773 4555554 3356666666
Q ss_pred cCCCCCCCCCCCCCCCCCcEEeecCC
Q 045261 164 FNCPNLTSLPKVGLPSSLLELTIFDC 189 (227)
Q Consensus 164 ~~c~~l~~~~~~~~~~~L~~L~l~~c 189 (227)
++| .++.+|..+.+++|++|+++++
T Consensus 223 ~~n-~l~~lp~~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 223 GNN-ILEELPELQNLPFLTTIYADNN 247 (454)
T ss_dssp CSS-CCSSCCCCTTCTTCCEEECCSS
T ss_pred cCC-cCCcccccCCCCCCCEEECCCC
Confidence 665 3345554444556666666654
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.1e-12 Score=110.42 Aligned_cols=153 Identities=15% Similarity=0.131 Sum_probs=121.6
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcc---cCCC-CCCCCcceeEeccCcccccccchhcccccC
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVS---FPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRL 78 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~---~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l 78 (227)
.+++|+.|++++|...+.+|..+..+++|++|+++++. +.. +|.. ..+++|+.|++ ++ +.+.+.++...+..+
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~L-s~-N~l~~~l~~~~~~~l 398 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDI-SQ-NSVSYDEKKGDCSWT 398 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEEC-CS-SCCBCCGGGCSCCCC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEEC-CC-CcCCcccccchhccC
Confidence 46899999999986656688889999999999999975 553 3333 78899999999 77 555534655567889
Q ss_pred CccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCC
Q 045261 79 TSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPS 156 (227)
Q Consensus 79 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~ 156 (227)
++|++|++++|.-...+|..+ .++|+.|++++ +.+..+| .++..+++|++|+++++ .++.+|.. ...+
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~~l-----~~~L~~L~Ls~-N~l~~ip---~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~ 468 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFRCL-----PPRIKVLDLHS-NKIKSIP---KQVVKLEALQELNVASN-QLKSVPDGIFDRLT 468 (520)
T ss_dssp TTCCEEECCSSCCCGGGGGSC-----CTTCCEEECCS-SCCCCCC---GGGGGCTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred ccCCEEECcCCCCCcchhhhh-----cccCCEEECCC-Ccccccc---hhhhcCCCCCEEECCCC-cCCccCHHHhccCC
Confidence 999999999984445555433 37999999999 5778898 77779999999999994 78888875 3467
Q ss_pred ccceeeecCCCC
Q 045261 157 SLLDLCIFNCPN 168 (227)
Q Consensus 157 ~L~~l~i~~c~~ 168 (227)
+|+++++++++.
T Consensus 469 ~L~~L~l~~N~~ 480 (520)
T 2z7x_B 469 SLQKIWLHTNPW 480 (520)
T ss_dssp TCCEEECCSSCB
T ss_pred cccEEECcCCCC
Confidence 899999998763
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-12 Score=111.82 Aligned_cols=174 Identities=11% Similarity=0.079 Sum_probs=123.7
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC------------------CCCCCcceeEeccCcc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE------------------GFPTNLTSLAIGEDMK 64 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~------------------~~l~~L~~L~l~~~~~ 64 (227)
-+++|+.|++++|. ++..+. +..+++|++|++++|. +..++.. ..+++|+.|++ ++ +
T Consensus 56 ~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L-~~-N 130 (487)
T 3oja_A 56 PFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYL-AN-N 130 (487)
T ss_dssp TCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSE-EEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEEC-CS-S
T ss_pred CCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCc-CCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEEC-CC-C
Confidence 35788899998865 443333 7788888888887763 3333211 24577888888 65 4
Q ss_pred cccccchhcccccCCccceEEeccCCCCCc-cCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCC
Q 045261 65 MLYKGLVQWGLHRLTSLRWLLIERCDESEC-FPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDC 143 (227)
Q Consensus 65 ~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c 143 (227)
.+. ...+..++.+++|++|+++++ .+.. .|..+. ..+++|+.|++++ +.+..++ . ...+++|++|++++
T Consensus 131 ~l~-~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~--~~l~~L~~L~Ls~-N~l~~~~---~-~~~l~~L~~L~Ls~- 200 (487)
T 3oja_A 131 KIT-MLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELA--ASSDTLEHLNLQY-NFIYDVK---G-QVVFAKLKTLDLSS- 200 (487)
T ss_dssp CCC-SGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGG--GGTTTCCEEECTT-SCCCEEE---C-CCCCTTCCEEECCS-
T ss_pred CCC-CCCchhhcCCCCCCEEECCCC-CCCCcChHHHh--hhCCcccEEecCC-Ccccccc---c-cccCCCCCEEECCC-
Confidence 554 444556888999999999998 5544 444442 1478999999999 5677765 2 34689999999999
Q ss_pred CCCccCCCC-CCCCccceeeecCCCCCCCCCCC-CCCCCCcEEeecCCchh
Q 045261 144 PNLTSLPKV-GLPSSLLDLCIFNCPNLTSLPKV-GLPSSLLELTIFDCPKL 192 (227)
Q Consensus 144 ~~l~~~~~~-~~~~~L~~l~i~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l 192 (227)
+.+..+|.. ...++|+.|+++++. +..+|.. ..+++|+.|++++++..
T Consensus 201 N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 201 NKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp SCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBC
T ss_pred CCCCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCc
Confidence 567777654 456789999999965 5566653 55789999999997644
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.1e-12 Score=107.93 Aligned_cols=156 Identities=24% Similarity=0.360 Sum_probs=72.5
Q ss_pred CccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccc---------
Q 045261 6 SISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLH--------- 76 (227)
Q Consensus 6 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~--------- 76 (227)
+|+.|+++++ .++.+|..+ +++|++|+++++. +..+| ..+++|+.|++ ++ +.++ .++. +.
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~l--~~~L~~L~Ls~N~-l~~ip--~~l~~L~~L~L-s~-N~l~-~ip~--l~~~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDNL--PPQITVLEITQNA-LISLP--ELPASLEYLDA-CD-NRLS-TLPE--LPASLKHLDVD 128 (571)
T ss_dssp TCSEEECCSS-CCSCCCSCC--CTTCSEEECCSSC-CSCCC--CCCTTCCEEEC-CS-SCCS-CCCC--CCTTCCEEECC
T ss_pred CccEEEeCCC-CCCccCHhH--cCCCCEEECcCCC-Ccccc--cccCCCCEEEc-cC-CCCC-Ccch--hhcCCCEEECC
Confidence 4555555553 344455433 2455555555542 44444 34455555555 43 2332 1211 22
Q ss_pred ---------cCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCc
Q 045261 77 ---------RLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLT 147 (227)
Q Consensus 77 ---------~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~ 147 (227)
.+++|++|+++++ .++.+|. .+++|+.|++++ +.+..+| . +. ++|+.|++++ +.++
T Consensus 129 ~N~l~~lp~~l~~L~~L~Ls~N-~l~~lp~------~l~~L~~L~Ls~-N~L~~lp---~-l~--~~L~~L~Ls~-N~L~ 193 (571)
T 3cvr_A 129 NNQLTMLPELPALLEYINADNN-QLTMLPE------LPTSLEVLSVRN-NQLTFLP---E-LP--ESLEALDVST-NLLE 193 (571)
T ss_dssp SSCCSCCCCCCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCS-SCCSCCC---C-CC--TTCCEEECCS-SCCS
T ss_pred CCcCCCCCCcCccccEEeCCCC-ccCcCCC------cCCCcCEEECCC-CCCCCcc---h-hh--CCCCEEECcC-CCCC
Confidence 3344455555444 3333443 234555555555 3444454 2 32 5566666655 3455
Q ss_pred cCCCCCCCCcc-------ceeeecCCCCCCCCCCC-CCCCCCcEEeecCCc
Q 045261 148 SLPKVGLPSSL-------LDLCIFNCPNLTSLPKV-GLPSSLLELTIFDCP 190 (227)
Q Consensus 148 ~~~~~~~~~~L-------~~l~i~~c~~l~~~~~~-~~~~~L~~L~l~~c~ 190 (227)
.+|. +..+| +.|+++++ .++.+|.. ..+++|+.|++++++
T Consensus 194 ~lp~--~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 194 SLPA--VPVRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp SCCC--CC--------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSS
T ss_pred chhh--HHHhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCc
Confidence 5554 33355 56666653 34455542 225566666666654
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-11 Score=106.59 Aligned_cols=131 Identities=30% Similarity=0.426 Sum_probs=91.4
Q ss_pred CcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCccc
Q 045261 30 SLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLV 109 (227)
Q Consensus 30 ~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~ 109 (227)
+|+.|+++++. +..+|.. .+++|+.|++ ++ +.++ .++ ..+++|++|++++| .++.+|. +. .+|+
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~-l~~~L~~L~L-s~-N~l~-~ip----~~l~~L~~L~Ls~N-~l~~ip~-l~-----~~L~ 123 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDN-LPPQITVLEI-TQ-NALI-SLP----ELPASLEYLDACDN-RLSTLPE-LP-----ASLK 123 (571)
T ss_dssp TCSEEECCSSC-CSCCCSC-CCTTCSEEEC-CS-SCCS-CCC----CCCTTCCEEECCSS-CCSCCCC-CC-----TTCC
T ss_pred CccEEEeCCCC-CCccCHh-HcCCCCEEEC-cC-CCCc-ccc----cccCCCCEEEccCC-CCCCcch-hh-----cCCC
Confidence 89999999974 7777764 4589999999 76 4565 443 45789999999997 6777887 43 2788
Q ss_pred eEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeeecCCCCCCCCCCCCCCCCCcEEeecCC
Q 045261 110 HLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDC 189 (227)
Q Consensus 110 ~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~c 189 (227)
.|++++ +.+..+| . .+++|+.|++++ +.++.+|. .+++|++|+++++. ++.+|. +.++|+.|+++++
T Consensus 124 ~L~Ls~-N~l~~lp---~---~l~~L~~L~Ls~-N~l~~lp~--~l~~L~~L~Ls~N~-L~~lp~--l~~~L~~L~Ls~N 190 (571)
T 3cvr_A 124 HLDVDN-NQLTMLP---E---LPALLEYINADN-NQLTMLPE--LPTSLEVLSVRNNQ-LTFLPE--LPESLEALDVSTN 190 (571)
T ss_dssp EEECCS-SCCSCCC---C---CCTTCCEEECCS-SCCSCCCC--CCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSS
T ss_pred EEECCC-CcCCCCC---C---cCccccEEeCCC-CccCcCCC--cCCCcCEEECCCCC-CCCcch--hhCCCCEEECcCC
Confidence 888887 5666676 3 567777777777 45666665 45667777776654 444555 3366666666655
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.1e-11 Score=92.00 Aligned_cols=154 Identities=23% Similarity=0.318 Sum_probs=83.8
Q ss_pred CCCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 3 LPESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
++++|++|+++++. ++.++ ..+..+++|++|+++++ .+..++.. ..+++|++|++ ++ +.+. .+++..+..++
T Consensus 26 ~~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L-s~-n~l~-~~~~~~~~~l~ 100 (208)
T 2o6s_A 26 IPAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNL-ST-NQLQ-SLPNGVFDKLT 100 (208)
T ss_dssp CCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC-CS-SCCC-CCCTTTTTTCT
T ss_pred CCCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEEC-CC-CcCC-ccCHhHhcCcc
Confidence 34566667776643 44444 33466666777776664 34555443 45666777766 54 3343 33343456666
Q ss_pred ccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccc
Q 045261 80 SLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLL 159 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~ 159 (227)
+|++|+++++ .+..++.... ..+++|++|++++ +.+..++ ...+..+++|++|++++++-. ...+.++
T Consensus 101 ~L~~L~L~~N-~l~~~~~~~~--~~l~~L~~L~l~~-N~l~~~~--~~~~~~l~~L~~L~l~~N~~~------~~~~~l~ 168 (208)
T 2o6s_A 101 QLKELALNTN-QLQSLPDGVF--DKLTQLKDLRLYQ-NQLKSVP--DGVFDRLTSLQYIWLHDNPWD------CTCPGIR 168 (208)
T ss_dssp TCCEEECCSS-CCCCCCTTTT--TTCTTCCEEECCS-SCCSCCC--TTTTTTCTTCCEEECCSCCBC------CCTTTTH
T ss_pred CCCEEEcCCC-cCcccCHhHh--ccCCcCCEEECCC-CccceeC--HHHhccCCCccEEEecCCCee------cCCCCHH
Confidence 6777776665 4555554321 1456667777666 3455555 234566666777766664321 1233455
Q ss_pred eeeecCCCCCCCCC
Q 045261 160 DLCIFNCPNLTSLP 173 (227)
Q Consensus 160 ~l~i~~c~~l~~~~ 173 (227)
+|+++.+..-+.+|
T Consensus 169 ~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 169 YLSEWINKHSGVVR 182 (208)
T ss_dssp HHHHHHHHCTTTBB
T ss_pred HHHHHHHhCCceee
Confidence 55555544444444
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.39 E-value=4e-12 Score=110.74 Aligned_cols=147 Identities=18% Similarity=0.197 Sum_probs=119.0
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLR 82 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~ 82 (227)
.+++|+.|+|++|. +..++. +..+++|+.|++++|. +..++....+++|+.|++ +++ .+. .+ ..+..+++|+
T Consensus 63 ~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~L-s~N-~l~-~l--~~l~~l~~L~ 134 (605)
T 1m9s_A 63 YLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLSL-EHN-GIS-DI--NGLVHLPQLE 134 (605)
T ss_dssp GCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEEC-TTS-CCC-CC--GGGGGCTTCS
T ss_pred cCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCC-CCCChhhccCCCCCEEEe-cCC-CCC-CC--ccccCCCccC
Confidence 47899999999974 666665 8899999999999974 777776688999999999 774 454 22 2588999999
Q ss_pred eEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceee
Q 045261 83 WLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLC 162 (227)
Q Consensus 83 ~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~ 162 (227)
.|++++| .+..++ .+. .+++|+.|++++ +.+..++ . +..+++|++|++++| .+..++....+++|+.|+
T Consensus 135 ~L~Ls~N-~l~~l~-~l~---~l~~L~~L~Ls~-N~l~~~~---~-l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~ 203 (605)
T 1m9s_A 135 SLYLGNN-KITDIT-VLS---RLTKLDTLSLED-NQISDIV---P-LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLE 203 (605)
T ss_dssp EEECCSS-CCCCCG-GGG---SCTTCSEEECCS-SCCCCCG---G-GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEE
T ss_pred EEECCCC-ccCCch-hhc---ccCCCCEEECcC-CcCCCch---h-hccCCCCCEEECcCC-CCCCChHHccCCCCCEEE
Confidence 9999997 677774 333 789999999998 4677775 3 889999999999995 677777656778999999
Q ss_pred ecCCCC
Q 045261 163 IFNCPN 168 (227)
Q Consensus 163 i~~c~~ 168 (227)
+++|+.
T Consensus 204 L~~N~l 209 (605)
T 1m9s_A 204 LFSQEC 209 (605)
T ss_dssp CCSEEE
T ss_pred ccCCcC
Confidence 998654
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.38 E-value=3e-11 Score=105.46 Aligned_cols=91 Identities=26% Similarity=0.367 Sum_probs=47.4
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+++|+.|++++| .++.+|. .+++|++|+++++. +..+|. .+++|+.|++ ++ +.+. .++. .+++|+.
T Consensus 60 ~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~L-s~-N~l~-~l~~----~l~~L~~ 125 (622)
T 3g06_A 60 PAHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQ-LTSLPV--LPPGLLELSI-FS-NPLT-HLPA----LPSGLCK 125 (622)
T ss_dssp CTTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCC-CSCCCC--CCTTCCEEEE-CS-CCCC-CCCC----CCTTCCE
T ss_pred CCCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCc-CCcCCC--CCCCCCEEEC-cC-CcCC-CCCC----CCCCcCE
Confidence 456677777764 3555554 45666677776653 555554 5566666666 44 2332 1111 3344555
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEec
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVE 115 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~ 115 (227)
|++.++ .++.+|. .+++|++|++++
T Consensus 126 L~L~~N-~l~~lp~------~l~~L~~L~Ls~ 150 (622)
T 3g06_A 126 LWIFGN-QLTSLPV------LPPGLQELSVSD 150 (622)
T ss_dssp EECCSS-CCSCCCC------CCTTCCEEECCS
T ss_pred EECCCC-CCCcCCC------CCCCCCEEECcC
Confidence 555544 3444443 124455555554
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.2e-12 Score=108.29 Aligned_cols=153 Identities=15% Similarity=0.150 Sum_probs=121.5
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCC---C-CCCCCcceeEeccCcccccccchhcccccC
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPE---E-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRL 78 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~---~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l 78 (227)
.+++|+.|++++|...+..|..++++++|++|+++++. +..++. . ..+++|+.|++ ++ +.+.+.++...+..+
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l-~~-N~l~~~~~~~~~~~l 427 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDV-SL-NSLNSHAYDRTCAWA 427 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEEC-TT-SCCBSCCSSCCCCCC
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEEC-CC-CcCCCccChhhhcCc
Confidence 46899999999986656678889999999999999974 665542 2 68899999999 77 455534556568889
Q ss_pred CccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCC
Q 045261 79 TSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPS 156 (227)
Q Consensus 79 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~ 156 (227)
++|++|+++++.-...++..+ .++|+.|++++ +.+..+| .++.++++|++|++++ +.+..+|.. ...+
T Consensus 428 ~~L~~L~l~~n~l~~~~~~~l-----~~~L~~L~L~~-N~l~~ip---~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~ 497 (562)
T 3a79_B 428 ESILVLNLSSNMLTGSVFRCL-----PPKVKVLDLHN-NRIMSIP---KDVTHLQALQELNVAS-NQLKSVPDGVFDRLT 497 (562)
T ss_dssp TTCCEEECCSSCCCGGGGSSC-----CTTCSEEECCS-SCCCCCC---TTTTSSCCCSEEECCS-SCCCCCCTTSTTTCT
T ss_pred ccCCEEECCCCCCCcchhhhh-----cCcCCEEECCC-CcCcccC---hhhcCCCCCCEEECCC-CCCCCCCHHHHhcCC
Confidence 999999999984434444432 27999999998 5888998 7777999999999999 578888874 4567
Q ss_pred ccceeeecCCCC
Q 045261 157 SLLDLCIFNCPN 168 (227)
Q Consensus 157 ~L~~l~i~~c~~ 168 (227)
+|+.+++++++.
T Consensus 498 ~L~~L~l~~N~~ 509 (562)
T 3a79_B 498 SLQYIWLHDNPW 509 (562)
T ss_dssp TCCCEECCSCCB
T ss_pred CCCEEEecCCCc
Confidence 899999998764
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.2e-12 Score=99.55 Aligned_cols=144 Identities=16% Similarity=0.164 Sum_probs=114.5
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+++|+.|++++| .++.++ .+..+++|++|+++++. +..++....+++|+.|++ ++ +.+. .++. +.. ++|++
T Consensus 40 l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~L-~~-N~l~-~l~~--~~~-~~L~~ 110 (263)
T 1xeu_A 40 LSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQ-ISDLSPLKDLTKLEELSV-NR-NRLK-NLNG--IPS-ACLSR 110 (263)
T ss_dssp HTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEEC-CS-SCCS-CCTT--CCC-SSCCE
T ss_pred cCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCc-cCCChhhccCCCCCEEEC-CC-CccC-CcCc--ccc-CcccE
Confidence 478999999996 577787 68899999999999874 666665678899999999 76 4554 3322 333 89999
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeee
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCI 163 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i 163 (227)
|+++++ .++.++. +. .+++|+.|++++ +.+..++ .+..+++|++|++++ +.+..++....+++|+.|++
T Consensus 111 L~L~~N-~l~~~~~-l~---~l~~L~~L~Ls~-N~i~~~~----~l~~l~~L~~L~L~~-N~i~~~~~l~~l~~L~~L~l 179 (263)
T 1xeu_A 111 LFLDNN-ELRDTDS-LI---HLKNLEILSIRN-NKLKSIV----MLGFLSKLEVLDLHG-NEITNTGGLTRLKKVNWIDL 179 (263)
T ss_dssp EECCSS-CCSBSGG-GT---TCTTCCEEECTT-SCCCBCG----GGGGCTTCCEEECTT-SCCCBCTTSTTCCCCCEEEE
T ss_pred EEccCC-ccCCChh-hc---CcccccEEECCC-CcCCCCh----HHccCCCCCEEECCC-CcCcchHHhccCCCCCEEeC
Confidence 999997 7777764 33 789999999998 5677775 578899999999999 56777755566789999999
Q ss_pred cCCC
Q 045261 164 FNCP 167 (227)
Q Consensus 164 ~~c~ 167 (227)
++++
T Consensus 180 ~~N~ 183 (263)
T 1xeu_A 180 TGQK 183 (263)
T ss_dssp EEEE
T ss_pred CCCc
Confidence 9865
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-11 Score=94.46 Aligned_cols=130 Identities=19% Similarity=0.354 Sum_probs=104.3
Q ss_pred CCCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccC-CC-CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 3 LPESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFP-EE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~-~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
+.++|+.|+++++ .++.++ ..+.++++|++|+++++. +..+. .. ..+++|+.|++ ++ +.++ .+++..+..++
T Consensus 30 l~~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~L-s~-N~l~-~l~~~~f~~l~ 104 (220)
T 2v9t_B 30 LPETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVL-YG-NKIT-ELPKSLFEGLF 104 (220)
T ss_dssp CCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEEC-CS-SCCC-CCCTTTTTTCT
T ss_pred cCcCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEEC-CC-CcCC-ccCHhHccCCC
Confidence 4578999999996 466665 478999999999999975 66664 33 78899999999 66 5665 56666678999
Q ss_pred ccceEEeccCCCCCccCc-cCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCC
Q 045261 80 SLRWLLIERCDESECFPD-GMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCP 144 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~~-~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~ 144 (227)
+|++|+++++ .+..++. .+. .+++|+.|++++ +.+..++ ...+..+++|++|++++++
T Consensus 105 ~L~~L~L~~N-~l~~~~~~~~~---~l~~L~~L~L~~-N~l~~~~--~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 105 SLQLLLLNAN-KINCLRVDAFQ---DLHNLNLLSLYD-NKLQTIA--KGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TCCEEECCSS-CCCCCCTTTTT---TCTTCCEEECCS-SCCSCCC--TTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCC-CCCEeCHHHcC---CCCCCCEEECCC-CcCCEEC--HHHHhCCCCCCEEEeCCCC
Confidence 9999999997 6666644 443 689999999998 6777777 4668899999999999854
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.4e-12 Score=103.87 Aligned_cols=168 Identities=16% Similarity=0.216 Sum_probs=120.5
Q ss_pred cEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--C-CCCCcceeEeccCcccccccchhcccccCCccceE
Q 045261 8 SSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--G-FPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWL 84 (227)
Q Consensus 8 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~-~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L 84 (227)
+.+++++ ..++.+|..+. +.++.|+++++ .+..++.. . .+++|+.|++ ++ +.+. .+.+..+..+++|++|
T Consensus 21 ~~l~c~~-~~l~~iP~~~~--~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L-~~-N~i~-~i~~~~~~~l~~L~~L 93 (361)
T 2xot_A 21 NILSCSK-QQLPNVPQSLP--SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLL-SH-NHLN-FISSEAFVPVPNLRYL 93 (361)
T ss_dssp TEEECCS-SCCSSCCSSCC--TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEEC-CS-SCCC-EECTTTTTTCTTCCEE
T ss_pred CEEEeCC-CCcCccCccCC--CCCCEEECCCC-CCCccChhhhhhcccccCEEEC-CC-CcCC-ccChhhccCCCCCCEE
Confidence 4677777 46777886543 45889999886 47777665 3 7899999999 66 4555 4555568889999999
Q ss_pred EeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCC-----CCCccc
Q 045261 85 LIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVG-----LPSSLL 159 (227)
Q Consensus 85 ~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~-----~~~~L~ 159 (227)
+++++ .+..++.... ..+++|+.|++++ +.+..++ ...+..+++|++|++++ +.+..+|... .+++|+
T Consensus 94 ~Ls~N-~l~~~~~~~~--~~l~~L~~L~L~~-N~i~~~~--~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 94 DLSSN-HLHTLDEFLF--SDLQALEVLLLYN-NHIVVVD--RNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLM 166 (361)
T ss_dssp ECCSS-CCCEECTTTT--TTCTTCCEEECCS-SCCCEEC--TTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCC
T ss_pred ECCCC-cCCcCCHHHh--CCCcCCCEEECCC-CcccEEC--HHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCC
Confidence 99987 6777766432 2678999999998 5666664 37788999999999998 5788887653 367899
Q ss_pred eeeecCCCCCCCCCCCC--CCCC--CcEEeecCCc
Q 045261 160 DLCIFNCPNLTSLPKVG--LPSS--LLELTIFDCP 190 (227)
Q Consensus 160 ~l~i~~c~~l~~~~~~~--~~~~--L~~L~l~~c~ 190 (227)
+|+++++ .++.++... .++. ++.|++.+++
T Consensus 167 ~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 167 LLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp EEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred EEECCCC-CCCccCHHHhhhccHhhcceEEecCCC
Confidence 9999985 455665321 1333 4778888743
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-12 Score=93.29 Aligned_cols=129 Identities=16% Similarity=0.189 Sum_probs=93.5
Q ss_pred CCCCccEEEeccCCCC-CcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCcc
Q 045261 3 LPESISSVEIRRCEKL-GALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l-~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L 81 (227)
.+++|+.|++++|... +.+|..+..+++|++|++++|. +..++....+++|+.|++ ++ +.+.+. .+..+..+++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L-s~-n~i~~~-~~~~~~~l~~L 90 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIANLPKLNKLKKLEL-SD-NRVSGG-LEVLAEKCPNL 90 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCCTTCCCCTTCCEEEC-CS-SCCCSC-THHHHHHCTTC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCchhhhcCCCCCEEEC-CC-Ccccch-HHHHhhhCCCC
Confidence 3578999999997543 3788888889999999998874 666643477889999999 66 445422 34456678889
Q ss_pred ceEEeccCCCCCccC--ccCcCCCCCCccceEEEecCCCccccCCCC---CCccCCCCccEEeecC
Q 045261 82 RWLLIERCDESECFP--DGMMGMTLPTSLVHLNIVEFQKLKNLSSSS---SGFHSLTSLRRLLIQD 142 (227)
Q Consensus 82 ~~L~l~~~~~l~~l~--~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~---~~l~~l~~L~~L~l~~ 142 (227)
++|+++++ .++.++ ..+. .+++|++|++++ +.+..++ . ..+..+++|++|++++
T Consensus 91 ~~L~ls~N-~i~~~~~~~~~~---~l~~L~~L~l~~-N~l~~~~--~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 91 THLNLSGN-KIKDLSTIEPLK---KLENLKSLDLFN-CEVTNLN--DYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CEEECTTS-CCCSHHHHGGGG---GCTTCCEEECTT-CGGGGST--THHHHHHHHCTTCCEETTBC
T ss_pred CEEECCCC-cCCChHHHHHHh---hCCCCCEEeCcC-CcccchH--HHHHHHHHHCCCcccccCCC
Confidence 99999887 566654 4443 678888998888 4677776 2 2567788888887653
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=7.3e-12 Score=102.55 Aligned_cols=153 Identities=18% Similarity=0.196 Sum_probs=114.6
Q ss_pred CCCCCccEEEeccCCCCCcCC-cccC-CCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhccccc
Q 045261 2 RLPESISSVEIRRCEKLGALP-SDMH-KLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHR 77 (227)
Q Consensus 2 ~~~~~L~~L~l~~~~~l~~lp-~~~~-~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~ 77 (227)
.+.+.++.|+++++ .++.++ ..+. ++++|++|+++++ .+..++.. ..+++|+.|++ ++ +.+. .+.+..+..
T Consensus 36 ~~~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~L-s~-N~l~-~~~~~~~~~ 110 (361)
T 2xot_A 36 SLPSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDL-SS-NHLH-TLDEFLFSD 110 (361)
T ss_dssp SCCTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC-CS-SCCC-EECTTTTTT
T ss_pred cCCCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEEC-CC-CcCC-cCCHHHhCC
Confidence 35678999999996 566665 4455 8999999999996 47777754 78899999999 76 5565 555667899
Q ss_pred CCccceEEeccCCCCCccC-ccCcCCCCCCccceEEEecCCCccccCCCCCCc---cCCCCccEEeecCCCCCccCCCC-
Q 045261 78 LTSLRWLLIERCDESECFP-DGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGF---HSLTSLRRLLIQDCPNLTSLPKV- 152 (227)
Q Consensus 78 l~~L~~L~l~~~~~l~~l~-~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l---~~l~~L~~L~l~~c~~l~~~~~~- 152 (227)
+++|++|+++++ .+..++ ..+. .+++|+.|++++ +.+..+| ...+ ..+++|++|++++ +.+..++..
T Consensus 111 l~~L~~L~L~~N-~i~~~~~~~~~---~l~~L~~L~L~~-N~l~~l~--~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~ 182 (361)
T 2xot_A 111 LQALEVLLLYNN-HIVVVDRNAFE---DMAQLQKLYLSQ-NQISRFP--VELIKDGNKLPKLMLLDLSS-NKLKKLPLTD 182 (361)
T ss_dssp CTTCCEEECCSS-CCCEECTTTTT---TCTTCCEEECCS-SCCCSCC--GGGTC----CTTCCEEECCS-SCCCCCCHHH
T ss_pred CcCCCEEECCCC-cccEECHHHhC---CcccCCEEECCC-CcCCeeC--HHHhcCcccCCcCCEEECCC-CCCCccCHHH
Confidence 999999999997 666664 4443 689999999998 6888887 2333 5789999999999 678887743
Q ss_pred -CCCCc--cceeeecCCC
Q 045261 153 -GLPSS--LLDLCIFNCP 167 (227)
Q Consensus 153 -~~~~~--L~~l~i~~c~ 167 (227)
...+. ++.|++.+++
T Consensus 183 ~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 183 LQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp HHHSCHHHHTTEECCSSC
T ss_pred hhhccHhhcceEEecCCC
Confidence 12233 3667777643
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.5e-11 Score=92.63 Aligned_cols=147 Identities=16% Similarity=0.228 Sum_probs=104.9
Q ss_pred cEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCC-C--CCCCCcceeEeccCcccccccchhcccccCCccceE
Q 045261 8 SSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPE-E--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWL 84 (227)
Q Consensus 8 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~-~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L 84 (227)
+.+++++ ..++.+|..+. +.+++|+++++. +..++. . ..+++|+.|++ ++ +.++ .+.+..+..+++|++|
T Consensus 14 ~~l~~s~-n~l~~iP~~~~--~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L-~~-N~i~-~i~~~~~~~l~~L~~L 86 (220)
T 2v70_A 14 TTVDCSN-QKLNKIPEHIP--QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINF-SN-NKIT-DIEEGAFEGASGVNEI 86 (220)
T ss_dssp TEEECCS-SCCSSCCSCCC--TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEEC-CS-SCCC-EECTTTTTTCTTCCEE
T ss_pred CEeEeCC-CCcccCccCCC--CCCCEEEcCCCc-CCccCchhhhccCCCCCEEEC-CC-CcCC-EECHHHhCCCCCCCEE
Confidence 5678887 45777886553 456889998864 666633 2 57889999999 66 4555 4455568888999999
Q ss_pred EeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCccceee
Q 045261 85 LIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLLDLC 162 (227)
Q Consensus 85 ~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l~ 162 (227)
+++++ .+..++.... ..+++|++|++++ +.+..++ ...+..+++|++|++++ +.+..++.. ...++|+.|+
T Consensus 87 ~Ls~N-~l~~~~~~~~--~~l~~L~~L~Ls~-N~l~~~~--~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 87 LLTSN-RLENVQHKMF--KGLESLKTLMLRS-NRITCVG--NDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp ECCSS-CCCCCCGGGG--TTCSSCCEEECTT-SCCCCBC--TTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEE
T ss_pred ECCCC-ccCccCHhHh--cCCcCCCEEECCC-CcCCeEC--HhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEE
Confidence 99987 6666665422 2678899999988 5666663 37788889999999988 567766432 3467888888
Q ss_pred ecCCCC
Q 045261 163 IFNCPN 168 (227)
Q Consensus 163 i~~c~~ 168 (227)
+++++.
T Consensus 160 L~~N~l 165 (220)
T 2v70_A 160 LLANPF 165 (220)
T ss_dssp CCSCCE
T ss_pred ecCcCC
Confidence 887653
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.6e-11 Score=90.63 Aligned_cols=146 Identities=16% Similarity=0.229 Sum_probs=98.7
Q ss_pred ceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCc-cCcCCCCCCccce
Q 045261 32 QDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPD-GMMGMTLPTSLVH 110 (227)
Q Consensus 32 ~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~~~~L~~ 110 (227)
+.+++++. .+..+|.. ....++.|++ ++ +.+........+..+++|++|+++++ .++.++. .+. .+++|++
T Consensus 14 ~~l~~s~n-~l~~iP~~-~~~~~~~L~L-~~-N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~---~l~~L~~ 85 (220)
T 2v70_A 14 TTVDCSNQ-KLNKIPEH-IPQYTAELRL-NN-NEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFE---GASGVNE 85 (220)
T ss_dssp TEEECCSS-CCSSCCSC-CCTTCSEEEC-CS-SCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTT---TCTTCCE
T ss_pred CEeEeCCC-CcccCccC-CCCCCCEEEc-CC-CcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhC---CCCCCCE
Confidence 56777764 46667653 4567788888 65 45542223334678888888888886 5666665 333 6788888
Q ss_pred EEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCccceeeecCCCCCCCCCC--CCCCCCCcEEee
Q 045261 111 LNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLLDLCIFNCPNLTSLPK--VGLPSSLLELTI 186 (227)
Q Consensus 111 L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l~i~~c~~l~~~~~--~~~~~~L~~L~l 186 (227)
|++++ +.+..++ ...+..+++|++|++++ +.+..++.. ...++|++|+++++. ++.++. ...+++|++|++
T Consensus 86 L~Ls~-N~l~~~~--~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 86 ILLTS-NRLENVQ--HKMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp EECCS-SCCCCCC--GGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEEC
T ss_pred EECCC-CccCccC--HhHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEe
Confidence 88888 5666665 35577888888888888 456666433 345788888888754 444433 234678888888
Q ss_pred cCCc
Q 045261 187 FDCP 190 (227)
Q Consensus 187 ~~c~ 190 (227)
++++
T Consensus 161 ~~N~ 164 (220)
T 2v70_A 161 LANP 164 (220)
T ss_dssp CSCC
T ss_pred cCcC
Confidence 8754
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=6.1e-11 Score=103.23 Aligned_cols=154 Identities=25% Similarity=0.181 Sum_probs=100.5
Q ss_pred cCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCc-cCccCcC
Q 045261 25 MHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESEC-FPDGMMG 101 (227)
Q Consensus 25 ~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~ 101 (227)
+..+++|+.+++.++......+.. ..+.+++.+++ +. +.+. ...+..+..+++|+.|+++++..... .|..+.
T Consensus 416 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l-s~-n~l~-~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~- 491 (635)
T 4g8a_A 416 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI-SH-THTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT- 491 (635)
T ss_dssp CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEEC-TT-SCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT-
T ss_pred ccccccccchhhhhccccccccccccccccccccccc-cc-cccc-cccccccccchhhhhhhhhhcccccccCchhhh-
Confidence 344555555555544322222211 45566666666 44 3333 33344567778888888888754443 344443
Q ss_pred CCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCccceeeecCCCCCCCCCCC---C
Q 045261 102 MTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLLDLCIFNCPNLTSLPKV---G 176 (227)
Q Consensus 102 ~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l~i~~c~~l~~~~~~---~ 176 (227)
.+++|++|++++| .+..++ ...+.++++|++|++++ +++..++.. ..+++|++|+++++. +..++.. .
T Consensus 492 --~l~~L~~L~Ls~N-~L~~l~--~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~ 564 (635)
T 4g8a_A 492 --ELRNLTFLDLSQC-QLEQLS--PTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQH 564 (635)
T ss_dssp --TCTTCCEEECTTS-CCCEEC--TTTTTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTTSC-CCBCCSSCTTC
T ss_pred --hccccCEEECCCC-ccCCcC--hHHHcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCCCc-CCCCCHHHHHh
Confidence 6789999999985 666664 37889999999999999 578887764 346799999999865 4444432 2
Q ss_pred CCCCCcEEeecCC
Q 045261 177 LPSSLLELTIFDC 189 (227)
Q Consensus 177 ~~~~L~~L~l~~c 189 (227)
+.++|++|+++++
T Consensus 565 l~~~L~~L~L~~N 577 (635)
T 4g8a_A 565 FPSSLAFLNLTQN 577 (635)
T ss_dssp CCTTCCEEECTTC
T ss_pred hhCcCCEEEeeCC
Confidence 3478999999864
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=9.7e-11 Score=101.95 Aligned_cols=153 Identities=19% Similarity=0.168 Sum_probs=117.1
Q ss_pred CCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 4 PESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
+++|+.++++++......+ ..+..+++++.++++.+. +...+.. ..+++++.|++ +++.... ...+..+..+++
T Consensus 419 l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~-l~~~~~~~~~~~~~L~~L~L-s~N~~~~-~~~~~~~~~l~~ 495 (635)
T 4g8a_A 419 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKM-AGNSFQE-NFLPDIFTELRN 495 (635)
T ss_dssp CTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEEC-TTCEEGG-GEECSCCTTCTT
T ss_pred cccccchhhhhccccccccccccccccccccccccccc-cccccccccccchhhhhhhh-hhccccc-ccCchhhhhccc
Confidence 5677777777765544443 456789999999999865 4444433 77899999999 8765554 445667899999
Q ss_pred cceEEeccCCCCCccC-ccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCC---CCC
Q 045261 81 LRWLLIERCDESECFP-DGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVG---LPS 156 (227)
Q Consensus 81 L~~L~l~~~~~l~~l~-~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~---~~~ 156 (227)
|++|++++| .++.++ ..+. .+++|++|++++ +.+..++ ...+.++++|+.|++++ +.+..++... ..+
T Consensus 496 L~~L~Ls~N-~L~~l~~~~f~---~l~~L~~L~Ls~-N~l~~l~--~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~ 567 (635)
T 4g8a_A 496 LTFLDLSQC-QLEQLSPTAFN---SLSSLQVLNMSH-NNFFSLD--TFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPS 567 (635)
T ss_dssp CCEEECTTS-CCCEECTTTTT---TCTTCCEEECTT-SCCCBCC--CGGGTTCTTCCEEECTT-SCCCBCCSSCTTCCCT
T ss_pred cCEEECCCC-ccCCcChHHHc---CCCCCCEEECCC-CcCCCCC--hhHHhCCCCCCEEECCC-CcCCCCCHHHHHhhhC
Confidence 999999998 676664 4454 789999999998 5777776 46788999999999999 5677776543 246
Q ss_pred ccceeeecCCC
Q 045261 157 SLLDLCIFNCP 167 (227)
Q Consensus 157 ~L~~l~i~~c~ 167 (227)
+|+.|++++++
T Consensus 568 ~L~~L~L~~Np 578 (635)
T 4g8a_A 568 SLAFLNLTQND 578 (635)
T ss_dssp TCCEEECTTCC
T ss_pred cCCEEEeeCCC
Confidence 89999999865
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-11 Score=90.47 Aligned_cols=126 Identities=15% Similarity=0.139 Sum_probs=58.4
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+++|+.|++++| .++.++......++|++|+++++. +..++....+++|+.|++ ++ +.+. .+++..+..+++|++
T Consensus 18 ~~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~L-s~-N~l~-~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 18 AVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLV-NN-NRIC-RIGEGLDQALPDLTE 92 (176)
T ss_dssp TTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEEC-CS-SCCC-EECSCHHHHCTTCCE
T ss_pred cCCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCCC-CCcccccccCCCCCEEEC-CC-Cccc-ccCcchhhcCCCCCE
Confidence 345555555554 344444322222355555555542 444432244555555555 44 2332 222222345555555
Q ss_pred EEeccCCCCCccCc--cCcCCCCCCccceEEEecCCCccccCCCCCC----ccCCCCccEEeecC
Q 045261 84 LLIERCDESECFPD--GMMGMTLPTSLVHLNIVEFQKLKNLSSSSSG----FHSLTSLRRLLIQD 142 (227)
Q Consensus 84 L~l~~~~~l~~l~~--~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~----l~~l~~L~~L~l~~ 142 (227)
|+++++ .+..+|. .+. .+++|+.|++++ +.+..+| .. +..+++|+.|++++
T Consensus 93 L~L~~N-~i~~~~~~~~l~---~l~~L~~L~l~~-N~i~~~~---~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 93 LILTNN-SLVELGDLDPLA---SLKSLTYLCILR-NPVTNKK---HYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp EECCSC-CCCCGGGGGGGG---GCTTCCEEECCS-SGGGGST---THHHHHHHHCTTCSEETTEE
T ss_pred EECCCC-cCCcchhhHhhh---cCCCCCEEEecC-CCCCCcH---hHHHHHHHHCCccceeCCCc
Confidence 555554 4444443 222 345555555555 3344444 32 44555555555554
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.15 E-value=9e-10 Score=80.85 Aligned_cols=85 Identities=28% Similarity=0.425 Sum_probs=36.0
Q ss_pred cccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--
Q 045261 75 LHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV-- 152 (227)
Q Consensus 75 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~-- 152 (227)
+..+++|++|+++++ .++.++.... ..+++|++|++++ +.+..++ ...+..+++|++|++++ +.+..++..
T Consensus 48 ~~~l~~L~~L~l~~n-~l~~~~~~~~--~~l~~L~~L~l~~-N~l~~~~--~~~~~~l~~L~~L~l~~-N~l~~~~~~~~ 120 (177)
T 2o6r_A 48 FDKLTQLTKLSLSQN-QIQSLPDGVF--DKLTKLTILYLHE-NKLQSLP--NGVFDKLTQLKELALDT-NQLKSVPDGIF 120 (177)
T ss_dssp TTTCTTCSEEECCSS-CCCCCCTTTT--TTCTTCCEEECCS-SCCCCCC--TTTTTTCTTCCEEECCS-SCCSCCCTTTT
T ss_pred hcCcccccEEECCCC-cceEeChhHc--cCCCccCEEECCC-CCccccC--HHHhhCCcccCEEECcC-CcceEeCHHHh
Confidence 344444555555443 3333433221 1344455555544 3343433 22334445555555544 234444432
Q ss_pred CCCCccceeeecCC
Q 045261 153 GLPSSLLDLCIFNC 166 (227)
Q Consensus 153 ~~~~~L~~l~i~~c 166 (227)
...++|++|+++++
T Consensus 121 ~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 121 DRLTSLQKIWLHTN 134 (177)
T ss_dssp TTCTTCCEEECCSS
T ss_pred cCCcccCEEEecCC
Confidence 12344455555443
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.3e-10 Score=83.46 Aligned_cols=84 Identities=20% Similarity=0.263 Sum_probs=34.8
Q ss_pred cccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--
Q 045261 75 LHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV-- 152 (227)
Q Consensus 75 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~-- 152 (227)
+..+++|++|+++++ .++.++.... ..+++|++|++++ +.+..++ ...+..+++|++|++++ +.+..++..
T Consensus 50 ~~~l~~L~~L~Ls~N-~i~~i~~~~f--~~l~~L~~L~Ls~-N~l~~i~--~~~f~~l~~L~~L~L~~-N~l~~~~~~~~ 122 (193)
T 2wfh_A 50 LSNYKHLTLIDLSNN-RISTLSNQSF--SNMTQLLTLILSY-NRLRCIP--PRTFDGLKSLRLLSLHG-NDISVVPEGAF 122 (193)
T ss_dssp GGGCTTCCEEECCSS-CCCCCCTTTT--TTCTTCCEEECCS-SCCCBCC--TTTTTTCTTCCEEECCS-SCCCBCCTTTT
T ss_pred hhcccCCCEEECCCC-cCCEeCHhHc--cCCCCCCEEECCC-CccCEeC--HHHhCCCCCCCEEECCC-CCCCeeChhhh
Confidence 444444444444443 3333332211 1344444444444 3333333 23344444455555444 334444432
Q ss_pred CCCCccceeeecC
Q 045261 153 GLPSSLLDLCIFN 165 (227)
Q Consensus 153 ~~~~~L~~l~i~~ 165 (227)
..+++|+.|++++
T Consensus 123 ~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 123 NDLSALSHLAIGA 135 (193)
T ss_dssp TTCTTCCEEECCS
T ss_pred hcCccccEEEeCC
Confidence 1233444444444
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.13 E-value=8.6e-10 Score=82.20 Aligned_cols=123 Identities=16% Similarity=0.276 Sum_probs=78.6
Q ss_pred cEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC---CCCCCcceeEeccCcccccccchhcccccCCccceE
Q 045261 8 SSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE---GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWL 84 (227)
Q Consensus 8 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~---~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L 84 (227)
+.+++++ ..++++|..+.. +|++|+++++ .+..++.. ..+++|++|++ ++ +.++ .+.+..+..+++|++|
T Consensus 11 ~~l~~s~-~~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~L-s~-N~l~-~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTG-RGLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLEL-KR-NQLT-GIEPNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTT-SCCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEEC-CS-SCCC-CBCTTTTTTCTTCCEE
T ss_pred CEEEcCC-CCcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEEC-CC-CCCC-CcCHhHcCCcccCCEE
Confidence 5677777 356777765433 7778888775 35555542 56777778877 55 4554 3445567777777888
Q ss_pred EeccCCCCCccCcc-CcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCC
Q 045261 85 LIERCDESECFPDG-MMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCP 144 (227)
Q Consensus 85 ~l~~~~~l~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~ 144 (227)
+++++ .++.++.. +. .+++|++|++++ +.+..++ ...+..+++|++|++++++
T Consensus 84 ~Ls~N-~l~~~~~~~~~---~l~~L~~L~L~~-N~l~~~~--~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 84 QLGEN-KIKEISNKMFL---GLHQLKTLNLYD-NQISCVM--PGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp ECCSC-CCCEECSSSST---TCTTCCEEECCS-SCCCEEC--TTSSTTCTTCCEEECTTCC
T ss_pred ECCCC-cCCccCHHHhc---CCCCCCEEECCC-CcCCeeC--HHHhhcCCCCCEEEeCCCC
Confidence 77776 55555543 32 567777777777 4454442 2667777777777777743
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-13 Score=118.65 Aligned_cols=174 Identities=17% Similarity=0.176 Sum_probs=123.9
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCC-------------CCcccCCC-CCCCCcceeEeccCcccccc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECP-------------SIVSFPEE-GFPTNLTSLAIGEDMKMLYK 68 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~-------------~l~~~~~~-~~l~~L~~L~l~~~~~~l~~ 68 (227)
..++|+.|+++++ .++.+|..++++++|+.|+++++. .....|.. +.+++|+.|+. ..++.+.
T Consensus 347 ~~~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~-l~~n~~~- 423 (567)
T 1dce_A 347 TDEQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP-MRAAYLD- 423 (567)
T ss_dssp TTTTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG-GGHHHHH-
T ss_pred cCccceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcc-hhhcccc-
Confidence 3567888888884 567888889999999998886542 12222222 45667777762 2333222
Q ss_pred cchh-----ccccc--CCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeec
Q 045261 69 GLVQ-----WGLHR--LTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQ 141 (227)
Q Consensus 69 ~~~~-----~~~~~--l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~ 141 (227)
.+.. ..+.. ...|+.|+++++ .++.+|. +. .+++|+.|++++ +.+..+| ..++++++|++|+++
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~---~l~~L~~L~Ls~-N~l~~lp---~~~~~l~~L~~L~Ls 494 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LE---QLLLVTHLDLSH-NRLRALP---PALAALRCLEVLQAS 494 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GG---GGTTCCEEECCS-SCCCCCC---GGGGGCTTCCEEECC
T ss_pred hhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-cc---ccccCcEeecCc-ccccccc---hhhhcCCCCCEEECC
Confidence 1100 00111 235899999997 7888886 54 789999999998 6777998 789999999999999
Q ss_pred CCCCCccCCCCCCCCccceeeecCCCCCCCC--CC-CCCCCCCcEEeecCCc
Q 045261 142 DCPNLTSLPKVGLPSSLLDLCIFNCPNLTSL--PK-VGLPSSLLELTIFDCP 190 (227)
Q Consensus 142 ~c~~l~~~~~~~~~~~L~~l~i~~c~~l~~~--~~-~~~~~~L~~L~l~~c~ 190 (227)
+ +.++.+|..+.+++|+.|+++++. ++.+ |. .+.+++|+.|++++++
T Consensus 495 ~-N~l~~lp~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 495 D-NALENVDGVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp S-SCCCCCGGGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred C-CCCCCCcccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCc
Confidence 9 578888855678899999999865 5555 43 3458999999999876
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.12 E-value=2.2e-10 Score=83.40 Aligned_cols=105 Identities=20% Similarity=0.238 Sum_probs=44.4
Q ss_pred cccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccc-cCCCCCCccCCCCccEEeecCCCCCccCCC--
Q 045261 75 LHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKN-LSSSSSGFHSLTSLRRLLIQDCPNLTSLPK-- 151 (227)
Q Consensus 75 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~-- 151 (227)
+..+++|++|++++| .+..+ ..+. .+++|++|+++++ .+.. +| ..+.++++|++|+++++ .+..++.
T Consensus 45 ~~~l~~L~~L~l~~n-~l~~~-~~~~---~l~~L~~L~Ls~N-~l~~~~~---~~~~~l~~L~~L~Ls~N-~l~~~~~~~ 114 (168)
T 2ell_A 45 TAEFVNLEFLSLINV-GLISV-SNLP---KLPKLKKLELSEN-RIFGGLD---MLAEKLPNLTHLNLSGN-KLKDISTLE 114 (168)
T ss_dssp CGGGGGCCEEEEESS-CCCCC-SSCC---CCSSCCEEEEESC-CCCSCCC---HHHHHCTTCCEEECBSS-SCCSSGGGG
T ss_pred HHhCCCCCEEeCcCC-CCCCh-hhhc---cCCCCCEEECcCC-cCchHHH---HHHhhCCCCCEEeccCC-ccCcchhHH
Confidence 344444444444444 23333 2221 3444555555442 2222 33 33333445555555442 3333321
Q ss_pred -CCCCCccceeeecCCCCCCCCCC-----CCCCCCCcEEeecCCc
Q 045261 152 -VGLPSSLLDLCIFNCPNLTSLPK-----VGLPSSLLELTIFDCP 190 (227)
Q Consensus 152 -~~~~~~L~~l~i~~c~~l~~~~~-----~~~~~~L~~L~l~~c~ 190 (227)
...+++|++|++++++ +..++. ...+++|++|++.+|.
T Consensus 115 ~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 115 PLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp GGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred HHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 1233444444444432 222222 1235666666666654
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.12 E-value=9e-11 Score=86.26 Aligned_cols=135 Identities=19% Similarity=0.163 Sum_probs=86.4
Q ss_pred cCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccC-cCC
Q 045261 25 MHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGM-MGM 102 (227)
Q Consensus 25 ~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~ 102 (227)
+.++.+|++|+++++. +..++.. ...++|+.|++ ++ +.++ .+ ..+..+++|++|+++++ .+..+|... .
T Consensus 15 ~~~~~~L~~L~l~~n~-l~~i~~~~~~~~~L~~L~L-s~-N~l~-~~--~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~-- 85 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDF-SD-NEIR-KL--DGFPLLRRLKTLLVNNN-RICRIGEGLDQ-- 85 (176)
T ss_dssp EECTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEEC-CS-SCCC-EE--CCCCCCSSCCEEECCSS-CCCEECSCHHH--
T ss_pred cCCcCCceEEEeeCCC-CchhHHhhhcCCCCCEEEC-CC-CCCC-cc--cccccCCCCCEEECCCC-cccccCcchhh--
Confidence 4567788888888863 6666544 33448888888 66 3454 22 35777888888888876 666676543 3
Q ss_pred CCCCccceEEEecCCCccccCCCCC--CccCCCCccEEeecCCCCCccCCCCCCCCccceeeecCCCCCCCCCCCCCCCC
Q 045261 103 TLPTSLVHLNIVEFQKLKNLSSSSS--GFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIFNCPNLTSLPKVGLPSS 180 (227)
Q Consensus 103 ~~~~~L~~L~l~~~~~l~~l~~~~~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i~~c~~l~~~~~~~~~~~ 180 (227)
.+++|+.|++++ +.+..+| . .+..+++|++|+++++ .+..++.... . ....+++
T Consensus 86 -~l~~L~~L~L~~-N~i~~~~---~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~------~------------~~~~l~~ 141 (176)
T 1a9n_A 86 -ALPDLTELILTN-NSLVELG---DLDPLASLKSLTYLCILRN-PVTNKKHYRL------Y------------VIYKVPQ 141 (176)
T ss_dssp -HCTTCCEEECCS-CCCCCGG---GGGGGGGCTTCCEEECCSS-GGGGSTTHHH------H------------HHHHCTT
T ss_pred -cCCCCCEEECCC-CcCCcch---hhHhhhcCCCCCEEEecCC-CCCCcHhHHH------H------------HHHHCCc
Confidence 567888888877 4666666 4 6677788888888774 3444443100 0 0113567
Q ss_pred CcEEeecCCchh
Q 045261 181 LLELTIFDCPKL 192 (227)
Q Consensus 181 L~~L~l~~c~~l 192 (227)
|+.|++.++..-
T Consensus 142 L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 142 VRVLDFQKVKLK 153 (176)
T ss_dssp CSEETTEECCHH
T ss_pred cceeCCCcCCHH
Confidence 788888777643
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.8e-12 Score=106.90 Aligned_cols=58 Identities=12% Similarity=0.175 Sum_probs=33.1
Q ss_pred CCCccEEEeccCC--CCC-cCCccc-------CCCCCcceEeecCCCCCcc-----cCCC-CCCCCcceeEeccCc
Q 045261 4 PESISSVEIRRCE--KLG-ALPSDM-------HKLNSLQDLDIRECPSIVS-----FPEE-GFPTNLTSLAIGEDM 63 (227)
Q Consensus 4 ~~~L~~L~l~~~~--~l~-~lp~~~-------~~l~~L~~L~l~~c~~l~~-----~~~~-~~l~~L~~L~l~~~~ 63 (227)
+++|+.|++++|. .+. .+|..+ ..+++|++|+++++. +.. ++.. ..+++|+.|++ ++|
T Consensus 59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L-~~n 132 (386)
T 2ca6_A 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYL-HNN 132 (386)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEEC-CSS
T ss_pred CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-CCHHHHHHHHHHHHhCCCCCEEEC-cCC
Confidence 5677778777752 111 234333 567777777777764 322 2222 45567777777 554
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.1e-09 Score=81.73 Aligned_cols=124 Identities=19% Similarity=0.301 Sum_probs=97.4
Q ss_pred cEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccceEEe
Q 045261 8 SSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLI 86 (227)
Q Consensus 8 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l 86 (227)
+.+++++ ..++++|..+ .++|++|+++++ .+..+|.. ..+++|+.|++ ++ +.++ .+.+..+..+++|++|++
T Consensus 13 ~~l~~~~-~~l~~ip~~~--~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~L-s~-N~i~-~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSN-KGLKVLPKGI--PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDL-SN-NRIS-TLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTT-SCCSSCCSCC--CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEEC-CS-SCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CEEEcCC-CCCCcCCCCC--CCCCCEEECCCC-cCchhHHHhhcccCCCEEEC-CC-CcCC-EeCHhHccCCCCCCEEEC
Confidence 5678887 4678888755 368999999986 47777755 78899999999 66 5665 555667899999999999
Q ss_pred ccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCC
Q 045261 87 ERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCP 144 (227)
Q Consensus 87 ~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~ 144 (227)
+++ .++.++.... ..+++|+.|++++ +.+..++ ...+..+++|++|++++++
T Consensus 86 s~N-~l~~i~~~~f--~~l~~L~~L~L~~-N~l~~~~--~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 86 SYN-RLRCIPPRTF--DGLKSLRLLSLHG-NDISVVP--EGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CSS-CCCBCCTTTT--TTCTTCCEEECCS-SCCCBCC--TTTTTTCTTCCEEECCSSC
T ss_pred CCC-ccCEeCHHHh--CCCCCCCEEECCC-CCCCeeC--hhhhhcCccccEEEeCCCC
Confidence 997 6777765322 2689999999998 6788887 4568899999999999854
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.9e-09 Score=76.85 Aligned_cols=125 Identities=22% Similarity=0.371 Sum_probs=82.3
Q ss_pred ccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCccceE
Q 045261 7 ISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWL 84 (227)
Q Consensus 7 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L 84 (227)
.+.+++++ ..++.+|..+ .++|++|+++++. +..++.. ..+++|++|++ ++ +.+. .+++..+..+++|++|
T Consensus 9 ~~~l~~~~-~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l-~~-n~l~-~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 9 GTEIRCNS-KGLTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSL-SQ-NQIQ-SLPDGVFDKLTKLTIL 81 (177)
T ss_dssp TTEEECCS-SCCSSCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEEC-CS-SCCC-CCCTTTTTTCTTCCEE
T ss_pred CCEEEecC-CCCccCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEEC-CC-Ccce-EeChhHccCCCccCEE
Confidence 34566666 3466666433 3678888887754 5555553 56778888888 65 4454 4444456778888888
Q ss_pred EeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCC
Q 045261 85 LIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCP 144 (227)
Q Consensus 85 ~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~ 144 (227)
+++++ .++.++.... ..+++|++|++++ +.+..++ ...+..+++|++|++++++
T Consensus 82 ~l~~N-~l~~~~~~~~--~~l~~L~~L~l~~-N~l~~~~--~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 82 YLHEN-KLQSLPNGVF--DKLTQLKELALDT-NQLKSVP--DGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp ECCSS-CCCCCCTTTT--TTCTTCCEEECCS-SCCSCCC--TTTTTTCTTCCEEECCSSC
T ss_pred ECCCC-CccccCHHHh--hCCcccCEEECcC-CcceEeC--HHHhcCCcccCEEEecCCC
Confidence 88876 5666665432 1567888888877 4666776 3445677888888887753
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.1e-10 Score=101.01 Aligned_cols=109 Identities=17% Similarity=0.144 Sum_probs=66.5
Q ss_pred CcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCc
Q 045261 22 PSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMM 100 (227)
Q Consensus 22 p~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~ 100 (227)
+..+..+++|+.|+++++. +..++.. ..+++|+.|++ ++ +.++ .+ +..+..+++|++|++++| .++.+|..++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~L-s~-N~l~-~l-p~~~~~l~~L~~L~Ls~N-~l~~lp~~~~ 290 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYL-NG-NSLT-EL-PAEIKNLSNLRVLDLSHN-RLTSLPAELG 290 (727)
T ss_dssp -----CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBC-TT-SCCS-CC-CGGGGGGTTCCEEECTTS-CCSSCCSSGG
T ss_pred hhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEe-eC-CcCc-cc-ChhhhCCCCCCEEeCcCC-cCCccChhhc
Confidence 4456666777777777654 4455544 55677777777 55 3443 33 334666777777777766 4556666664
Q ss_pred CCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCC
Q 045261 101 GMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDC 143 (227)
Q Consensus 101 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c 143 (227)
.+++|++|++++ +.+..+| ..+..+++|++|+++++
T Consensus 291 ---~l~~L~~L~L~~-N~l~~lp---~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 291 ---SCFQLKYFYFFD-NMVTTLP---WEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp ---GGTTCSEEECCS-SCCCCCC---SSTTSCTTCCCEECTTS
T ss_pred ---CCCCCCEEECCC-CCCCccC---hhhhcCCCccEEeCCCC
Confidence 566777777776 4566666 55777777777777774
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.9e-10 Score=82.00 Aligned_cols=111 Identities=20% Similarity=0.215 Sum_probs=70.3
Q ss_pred CCCcceEeecCCCCCc--ccCCC-CCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCc-cCccCcCCC
Q 045261 28 LNSLQDLDIRECPSIV--SFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESEC-FPDGMMGMT 103 (227)
Q Consensus 28 l~~L~~L~l~~c~~l~--~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~~~ 103 (227)
.++|++|++++|. +. .++.. ..+++|+.|++ +++ .+. .. ..+..+++|++|+++++ .+.. +|..+.
T Consensus 16 ~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l-~~n-~l~-~~--~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~--- 85 (149)
T 2je0_A 16 PSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLST-INV-GLT-SI--ANLPKLNKLKKLELSDN-RVSGGLEVLAE--- 85 (149)
T ss_dssp GGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEEC-TTS-CCC-CC--TTCCCCTTCCEEECCSS-CCCSCTHHHHH---
T ss_pred CccCeEEEccCCc-CChhHHHHHHhhcCCCcEEEC-cCC-CCC-Cc--hhhhcCCCCCEEECCCC-cccchHHHHhh---
Confidence 4667888888875 44 56655 66778888888 664 444 22 35677778888888776 4444 555442
Q ss_pred CCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCC
Q 045261 104 LPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPK 151 (227)
Q Consensus 104 ~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~ 151 (227)
.+++|++|+++++ .+..++ ....+..+++|++|+++++ .+..++.
T Consensus 86 ~l~~L~~L~ls~N-~i~~~~-~~~~~~~l~~L~~L~l~~N-~l~~~~~ 130 (149)
T 2je0_A 86 KCPNLTHLNLSGN-KIKDLS-TIEPLKKLENLKSLDLFNC-EVTNLND 130 (149)
T ss_dssp HCTTCCEEECTTS-CCCSHH-HHGGGGGCTTCCEEECTTC-GGGGSTT
T ss_pred hCCCCCEEECCCC-cCCChH-HHHHHhhCCCCCEEeCcCC-cccchHH
Confidence 4677888888774 454432 0045667777888887774 4555544
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.03 E-value=6.1e-12 Score=109.05 Aligned_cols=128 Identities=13% Similarity=0.069 Sum_probs=75.5
Q ss_pred CCCccEEEeccCCCCCcCCcccC-CCCCcceEeecCCCCCcc--cCCC-CCCCCcceeEeccCcccccccc---hhcccc
Q 045261 4 PESISSVEIRRCEKLGALPSDMH-KLNSLQDLDIRECPSIVS--FPEE-GFPTNLTSLAIGEDMKMLYKGL---VQWGLH 76 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~-~l~~L~~L~l~~c~~l~~--~~~~-~~l~~L~~L~l~~~~~~l~~~~---~~~~~~ 76 (227)
+++|+.|++++|......+..+. .+++|++|++.+|..+.. ++.. ..+++|++|++ ++|. +.+.. ......
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L-~~~~-i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL-RESD-VDDVSGHWLSHFPD 181 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEEC-TTCE-EECCCGGGGGGSCT
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeC-cCCc-cCCcchHHHHHHhh
Confidence 57888888888753222233333 578888888888754543 2222 35778888888 7765 33221 112233
Q ss_pred cCCccceEEeccCCCCCccCc-----cCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeec
Q 045261 77 RLTSLRWLLIERCDESECFPD-----GMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQ 141 (227)
Q Consensus 77 ~l~~L~~L~l~~~~~l~~l~~-----~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~ 141 (227)
.+++|++|+++++. ..+.. ... .+++|++|++++|..+..++ ..+.++++|++|++.
T Consensus 182 ~~~~L~~L~l~~~~--~~~~~~~l~~l~~---~~~~L~~L~L~~~~~~~~l~---~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 182 TYTSLVSLNISCLA--SEVSFSALERLVT---RCPNLKSLKLNRAVPLEKLA---TLLQRAPQLEELGTG 243 (594)
T ss_dssp TCCCCCEEECTTCC--SCCCHHHHHHHHH---HCTTCCEEECCTTSCHHHHH---HHHHHCTTCSEEECS
T ss_pred cCCcCcEEEecccC--CcCCHHHHHHHHH---hCCCCcEEecCCCCcHHHHH---HHHhcCCcceEcccc
Confidence 56778888888764 12211 111 35778888887775555555 555566666666543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-09 Score=94.61 Aligned_cols=106 Identities=18% Similarity=0.106 Sum_probs=61.5
Q ss_pred cceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCccce
Q 045261 31 LQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVH 110 (227)
Q Consensus 31 L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~ 110 (227)
|+.|+++++ .+..+|....+++|+.|++ ++ +.++ .+ |..++.+++|++|+++++ .++.+| .+. .+++|+.
T Consensus 443 L~~L~Ls~n-~l~~lp~~~~l~~L~~L~L-s~-N~l~-~l-p~~~~~l~~L~~L~Ls~N-~l~~lp-~l~---~l~~L~~ 512 (567)
T 1dce_A 443 VRVLHLAHK-DLTVLCHLEQLLLVTHLDL-SH-NRLR-AL-PPALAALRCLEVLQASDN-ALENVD-GVA---NLPRLQE 512 (567)
T ss_dssp CSEEECTTS-CCSSCCCGGGGTTCCEEEC-CS-SCCC-CC-CGGGGGCTTCCEEECCSS-CCCCCG-GGT---TCSSCCE
T ss_pred ceEEEecCC-CCCCCcCccccccCcEeec-Cc-cccc-cc-chhhhcCCCCCEEECCCC-CCCCCc-ccC---CCCCCcE
Confidence 566666654 3445554455566666666 44 3343 33 334666666777777665 555566 343 5666777
Q ss_pred EEEecCCCcccc--CCCCCCccCCCCccEEeecCCCCCccCCC
Q 045261 111 LNIVEFQKLKNL--SSSSSGFHSLTSLRRLLIQDCPNLTSLPK 151 (227)
Q Consensus 111 L~l~~~~~l~~l--~~~~~~l~~l~~L~~L~l~~c~~l~~~~~ 151 (227)
|++++ +.+..+ | ..+..+++|+.|++++ +.+..+|.
T Consensus 513 L~Ls~-N~l~~~~~p---~~l~~l~~L~~L~L~~-N~l~~~~~ 550 (567)
T 1dce_A 513 LLLCN-NRLQQSAAI---QPLVSCPRLVLLNLQG-NSLCQEEG 550 (567)
T ss_dssp EECCS-SCCCSSSTT---GGGGGCTTCCEEECTT-SGGGGSSS
T ss_pred EECCC-CCCCCCCCc---HHHhcCCCCCEEEecC-CcCCCCcc
Confidence 77766 455554 5 5666677777777776 34555443
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.00 E-value=3.1e-11 Score=99.54 Aligned_cols=84 Identities=13% Similarity=0.105 Sum_probs=43.4
Q ss_pred CCCccEEEeccCCCCCc----CCcccCCCCCcceEeecCCC--CCc-ccCCC--------CCCCCcceeEeccCcccccc
Q 045261 4 PESISSVEIRRCEKLGA----LPSDMHKLNSLQDLDIRECP--SIV-SFPEE--------GFPTNLTSLAIGEDMKMLYK 68 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~----lp~~~~~l~~L~~L~l~~c~--~l~-~~~~~--------~~l~~L~~L~l~~~~~~l~~ 68 (227)
+++|+.|++++|..-.. ++..+..+++|++|++++|. .+. .+|.. ..+++|++|++ +++ .+.+
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L-s~n-~l~~ 108 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL-SDN-AFGP 108 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC-CSC-CCCT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC-CCC-cCCH
Confidence 45677777777532222 23345667777777777652 111 11110 35567777777 553 3332
Q ss_pred c---chhcccccCCccceEEeccC
Q 045261 69 G---LVQWGLHRLTSLRWLLIERC 89 (227)
Q Consensus 69 ~---~~~~~~~~l~~L~~L~l~~~ 89 (227)
. ..+..+..+++|++|++++|
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n 132 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNN 132 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHHHHHhCCCCCEEECcCC
Confidence 1 12223455666666666665
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.8e-11 Score=104.90 Aligned_cols=135 Identities=16% Similarity=0.105 Sum_probs=91.2
Q ss_pred CCCccEEEeccCCCCCcCC---c------------ccCCCCCcceEeecCCCCCcccC-CC--CCCCCcceeEeccCccc
Q 045261 4 PESISSVEIRRCEKLGALP---S------------DMHKLNSLQDLDIRECPSIVSFP-EE--GFPTNLTSLAIGEDMKM 65 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp---~------------~~~~l~~L~~L~l~~c~~l~~~~-~~--~~l~~L~~L~l~~~~~~ 65 (227)
+++|+.|++++|..+..+. . ....+++|++|++++|. +.... .. ..+++|+.|++ .+|..
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L-~~~~~ 142 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVL-SSCEG 142 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEE-ESCEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeC-CCcCC
Confidence 5889999999987654321 1 12468899999999985 33221 11 25789999999 99877
Q ss_pred ccccchhcccccCCccceEEeccCCCCCc-----cCccCcCCCCCCccceEEEecCC-Ccc--ccCCCCCCccCCCCccE
Q 045261 66 LYKGLVQWGLHRLTSLRWLLIERCDESEC-----FPDGMMGMTLPTSLVHLNIVEFQ-KLK--NLSSSSSGFHSLTSLRR 137 (227)
Q Consensus 66 l~~~~~~~~~~~l~~L~~L~l~~~~~l~~-----l~~~~~~~~~~~~L~~L~l~~~~-~l~--~l~~~~~~l~~l~~L~~ 137 (227)
+.+...+..+..+++|++|++++|. +.. ++... ..+++|++|++++|. .+. .+. ....++++|++
T Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~---~~~~~L~~L~l~~~~~~~~~~~l~---~l~~~~~~L~~ 215 (594)
T 2p1m_B 143 FSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFP---DTYTSLVSLNISCLASEVSFSALE---RLVTRCPNLKS 215 (594)
T ss_dssp EEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSC---TTCCCCCEEECTTCCSCCCHHHHH---HHHHHCTTCCE
T ss_pred CCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHh---hcCCcCcEEEecccCCcCCHHHHH---HHHHhCCCCcE
Confidence 7643344445689999999999884 333 22222 157899999999875 121 122 22345799999
Q ss_pred EeecCCCCCc
Q 045261 138 LLIQDCPNLT 147 (227)
Q Consensus 138 L~l~~c~~l~ 147 (227)
|++.+|..+.
T Consensus 216 L~L~~~~~~~ 225 (594)
T 2p1m_B 216 LKLNRAVPLE 225 (594)
T ss_dssp EECCTTSCHH
T ss_pred EecCCCCcHH
Confidence 9999985443
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.98 E-value=7.6e-10 Score=98.47 Aligned_cols=151 Identities=15% Similarity=0.162 Sum_probs=77.1
Q ss_pred CCccEEEeccCCCCCcCCcccCCCCCcceEeecCC----CCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLNSLQDLDIREC----PSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c----~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
+.++.|++.++ .+...+..+....+|..+.|... ..+...+.. ..+.+|+.|++ +++. +. .++. .+..++
T Consensus 173 ~~~~~l~L~~n-~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~L-s~n~-l~-~l~~-~~~~l~ 247 (727)
T 4b8c_D 173 PLTPKIELFAN-GKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDL-SNLQ-IF-NISA-NIFKYD 247 (727)
T ss_dssp --------------------------------------------------CCCCCCEEEC-TTSC-CS-CCCG-GGGGCC
T ss_pred CccceEEeeCC-CCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEEC-CCCC-CC-CCCh-hhcCCC
Confidence 34566677663 34444544444444555444332 112222222 56778888888 6643 43 3333 355788
Q ss_pred ccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC-CCCCcc
Q 045261 80 SLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV-GLPSSL 158 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L 158 (227)
+|++|+++++ .+..+|..+. .+++|+.|++++ +.+..+| ..+..+++|++|+++++ .++.+|.. +.+++|
T Consensus 248 ~L~~L~Ls~N-~l~~lp~~~~---~l~~L~~L~Ls~-N~l~~lp---~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L 318 (727)
T 4b8c_D 248 FLTRLYLNGN-SLTELPAEIK---NLSNLRVLDLSH-NRLTSLP---AELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNL 318 (727)
T ss_dssp SCSCCBCTTS-CCSCCCGGGG---GGTTCCEEECTT-SCCSSCC---SSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTC
T ss_pred CCCEEEeeCC-cCcccChhhh---CCCCCCEEeCcC-CcCCccC---hhhcCCCCCCEEECCCC-CCCccChhhhcCCCc
Confidence 8888888887 6667887665 678888888887 4566777 77888888888888884 67777764 456778
Q ss_pred ceeeecCCCCC
Q 045261 159 LDLCIFNCPNL 169 (227)
Q Consensus 159 ~~l~i~~c~~l 169 (227)
++|+++++...
T Consensus 319 ~~L~L~~N~l~ 329 (727)
T 4b8c_D 319 QFLGVEGNPLE 329 (727)
T ss_dssp CCEECTTSCCC
T ss_pred cEEeCCCCccC
Confidence 88888876644
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.98 E-value=3e-11 Score=98.87 Aligned_cols=108 Identities=16% Similarity=0.193 Sum_probs=57.2
Q ss_pred CCCCccEEEeccCCCCCcCC-----cccCCCC-CcceEeecCCCCCcccCCC--C-----CCCCcceeEeccCccccccc
Q 045261 3 LPESISSVEIRRCEKLGALP-----SDMHKLN-SLQDLDIRECPSIVSFPEE--G-----FPTNLTSLAIGEDMKMLYKG 69 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp-----~~~~~l~-~L~~L~l~~c~~l~~~~~~--~-----~l~~L~~L~l~~~~~~l~~~ 69 (227)
..++|+.|++++|. ++..+ ..+..++ +|++|++++|. +...... . ..++|++|++ ++|. +.+.
T Consensus 20 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~L-s~n~-l~~~ 95 (362)
T 3goz_A 20 IPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNL-SGNF-LSYK 95 (362)
T ss_dssp SCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEEC-CSSC-GGGS
T ss_pred CCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEEC-cCCc-CChH
Confidence 34568888888865 55444 4566777 78888888763 4443221 1 1377777777 6643 4322
Q ss_pred chhc---ccccC-CccceEEeccCCCCCccCccCc-C-CCC-CCccceEEEec
Q 045261 70 LVQW---GLHRL-TSLRWLLIERCDESECFPDGMM-G-MTL-PTSLVHLNIVE 115 (227)
Q Consensus 70 ~~~~---~~~~l-~~L~~L~l~~~~~l~~l~~~~~-~-~~~-~~~L~~L~l~~ 115 (227)
.... .+..+ ++|++|++++| .+...+.... . ... +++|++|++++
T Consensus 96 ~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 147 (362)
T 3goz_A 96 SSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRG 147 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTT
T ss_pred HHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccC
Confidence 1110 12333 66777777766 3444332110 0 001 24566666665
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.97 E-value=2e-11 Score=99.89 Aligned_cols=173 Identities=10% Similarity=0.017 Sum_probs=104.3
Q ss_pred CccEEEeccCCCCCcCCcccCCC-----CCcceEeecCCCCCcccCCC------CCC-CCcceeEeccCcccccccchhc
Q 045261 6 SISSVEIRRCEKLGALPSDMHKL-----NSLQDLDIRECPSIVSFPEE------GFP-TNLTSLAIGEDMKMLYKGLVQW 73 (227)
Q Consensus 6 ~L~~L~l~~~~~l~~lp~~~~~l-----~~L~~L~l~~c~~l~~~~~~------~~l-~~L~~L~l~~~~~~l~~~~~~~ 73 (227)
+|+.|++++|..-...+..+..+ ++|++|++++|. +...+.. ..+ ++|++|++ +++. +.+.....
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L-s~N~-l~~~~~~~ 128 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDL-GWND-FSSKSSSE 128 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEEC-CSSC-GGGSCHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEEC-cCCc-CCcHHHHH
Confidence 89999999974333334444443 889999999875 5543321 223 78999999 7744 44222111
Q ss_pred ---cccc-CCccceEEeccCCCCCc-----cCccCcCCCCC-CccceEEEecCCCccccCCCCC----CccCC-CCccEE
Q 045261 74 ---GLHR-LTSLRWLLIERCDESEC-----FPDGMMGMTLP-TSLVHLNIVEFQKLKNLSSSSS----GFHSL-TSLRRL 138 (227)
Q Consensus 74 ---~~~~-l~~L~~L~l~~~~~l~~-----l~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~----~l~~l-~~L~~L 138 (227)
.+.. .++|++|++++| .+.. ++..+. .. ++|++|++++| .+.... .. .+... ++|++|
T Consensus 129 l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~---~~~~~L~~L~Ls~n-~l~~~~--~~~l~~~l~~~~~~L~~L 201 (362)
T 3goz_A 129 FKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILA---AIPANVNSLNLRGN-NLASKN--CAELAKFLASIPASVTSL 201 (362)
T ss_dssp HHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHH---TSCTTCCEEECTTS-CGGGSC--HHHHHHHHHTSCTTCCEE
T ss_pred HHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHh---cCCccccEeeecCC-CCchhh--HHHHHHHHHhCCCCCCEE
Confidence 1233 358999999987 5542 222222 23 48999999884 554432 12 23345 489999
Q ss_pred eecCCCCCccC-----CCC--CCCCccceeeecCCCCCCCCCC------CCCCCCCcEEeecCCc
Q 045261 139 LIQDCPNLTSL-----PKV--GLPSSLLDLCIFNCPNLTSLPK------VGLPSSLLELTIFDCP 190 (227)
Q Consensus 139 ~l~~c~~l~~~-----~~~--~~~~~L~~l~i~~c~~l~~~~~------~~~~~~L~~L~l~~c~ 190 (227)
++++| .++.. +.. ...++|++|+++++. ++..+. ...+++|++|++++|.
T Consensus 202 ~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 202 DLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp ECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred ECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 99884 46552 221 123578888888864 444322 1345778888888775
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.4e-11 Score=105.35 Aligned_cols=33 Identities=15% Similarity=0.371 Sum_probs=16.7
Q ss_pred ccEEEeccCCCCCc--CCcccCCCCCcceEeecCC
Q 045261 7 ISSVEIRRCEKLGA--LPSDMHKLNSLQDLDIREC 39 (227)
Q Consensus 7 L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~l~~c 39 (227)
|++|++++|..+.. ++....++++|++|++++|
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 174 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEES 174 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccc
Confidence 66666666553221 1222235566666666665
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-08 Score=75.80 Aligned_cols=124 Identities=22% Similarity=0.277 Sum_probs=90.1
Q ss_pred ceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchh-cccccCCccceEEeccCCCCCcc-CccCcCCCCCCccc
Q 045261 32 QDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQ-WGLHRLTSLRWLLIERCDESECF-PDGMMGMTLPTSLV 109 (227)
Q Consensus 32 ~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~~~~L~ 109 (227)
+.+++++. .+..+|.. ...++++|++ ++ +.+. .+.+ ..++.+++|++|+++++ .++.+ |..+. .+++|+
T Consensus 11 ~~l~~s~~-~l~~ip~~-~~~~l~~L~l-~~-n~i~-~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~---~l~~L~ 81 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRD-IPLHTTELLL-ND-NELG-RISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFE---GASHIQ 81 (192)
T ss_dssp TEEECTTS-CCSSCCSC-CCTTCSEEEC-CS-CCCC-SBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTT---TCTTCC
T ss_pred CEEEcCCC-CcCcCccC-CCCCCCEEEC-CC-CcCC-ccCCccccccCCCCCEEECCCC-CCCCcCHhHcC---CcccCC
Confidence 67888875 47778764 4559999999 66 4565 3333 24788999999999997 56665 55554 688999
Q ss_pred eEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCccceeeecCCCC
Q 045261 110 HLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLLDLCIFNCPN 168 (227)
Q Consensus 110 ~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l~i~~c~~ 168 (227)
+|++++ +.+..++ ...+.++++|++|++++ +.+..++.. ..+++|++|++++++.
T Consensus 82 ~L~Ls~-N~l~~~~--~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 82 ELQLGE-NKIKEIS--NKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp EEECCS-CCCCEEC--SSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred EEECCC-CcCCccC--HHHhcCCCCCCEEECCC-CcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 999998 6777766 36688999999999999 456655332 3456777777776553
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.93 E-value=7.4e-09 Score=83.48 Aligned_cols=173 Identities=16% Similarity=0.141 Sum_probs=107.9
Q ss_pred CCCccEEEeccCCCC--C-----------------cCC-cccCC--------CCCcceEeecCCCCCcccCCC--CCCCC
Q 045261 4 PESISSVEIRRCEKL--G-----------------ALP-SDMHK--------LNSLQDLDIRECPSIVSFPEE--GFPTN 53 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l--~-----------------~lp-~~~~~--------l~~L~~L~l~~c~~l~~~~~~--~~l~~ 53 (227)
+++|+.|+|+++... . .+| ..+.+ +++|+.+.+.+ .+..++.. ..+++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCcc
Confidence 678999999986533 0 233 24456 88888888877 57777766 67888
Q ss_pred cceeEeccCcccccccchhcccccCCccceEEecc-----------------CCCCC---------ccCccC--------
Q 045261 54 LTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIER-----------------CDESE---------CFPDGM-------- 99 (227)
Q Consensus 54 L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~-----------------~~~l~---------~l~~~~-------- 99 (227)
|+.+++ .+ +.+. .+.+..+..+.++..+.... |..++ .++...
T Consensus 126 L~~l~l-~~-n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~ 202 (329)
T 3sb4_A 126 LKICQI-RK-KTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPR 202 (329)
T ss_dssp CCEEEB-CC-SSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGG
T ss_pred cceEEc-CC-CCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcc
Confidence 999988 55 3332 33444555554444443222 11111 000000
Q ss_pred -------cCC----------CCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCC--CCCccc-
Q 045261 100 -------MGM----------TLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVG--LPSSLL- 159 (227)
Q Consensus 100 -------~~~----------~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~--~~~~L~- 159 (227)
.+. ..+++|+++++.+ +.+..++ ...+.++++|+++++.+. +..++... ..++|+
T Consensus 203 ~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~-n~i~~I~--~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~ 277 (329)
T 3sb4_A 203 DINFLTIEGKLDNADFKLIRDYMPNLVSLDISK-TNATTIP--DFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAG 277 (329)
T ss_dssp GCSEEEEEECCCHHHHHHHHHHCTTCCEEECTT-BCCCEEC--TTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCE
T ss_pred ccceEEEeeeecHHHHHHHHHhcCCCeEEECCC-CCcceec--HhhhhCCCCCCEEECCcc--cceehHHHhhCChhccE
Confidence 000 0167888888886 4677887 677888889999988873 77777653 345687
Q ss_pred eeeecCCCCCCCCCCCCC--CCCCcEEeecC
Q 045261 160 DLCIFNCPNLTSLPKVGL--PSSLLELTIFD 188 (227)
Q Consensus 160 ~l~i~~c~~l~~~~~~~~--~~~L~~L~l~~ 188 (227)
.+.+.+ .++.++...+ +++|+++++.+
T Consensus 278 ~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 278 TLELPA--SVTAIEFGAFMGCDNLRYVLATG 306 (329)
T ss_dssp EEEECT--TCCEECTTTTTTCTTEEEEEECS
T ss_pred EEEEcc--cceEEchhhhhCCccCCEEEeCC
Confidence 888876 6677765433 77888888753
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=98.92 E-value=5.2e-11 Score=103.22 Aligned_cols=84 Identities=12% Similarity=0.212 Sum_probs=44.5
Q ss_pred CCCccEEEeccCCCCC---cCCcccC------------CCCCcceEeecCCCCCccc-CCC--CCCC-CcceeEeccCcc
Q 045261 4 PESISSVEIRRCEKLG---ALPSDMH------------KLNSLQDLDIRECPSIVSF-PEE--GFPT-NLTSLAIGEDMK 64 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~---~lp~~~~------------~l~~L~~L~l~~c~~l~~~-~~~--~~l~-~L~~L~l~~~~~ 64 (227)
+++|+.|++++|..+. .+|..++ .+++|++|++++|. +... ... ..++ +|++|++ .+|.
T Consensus 72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~L-~~~~ 149 (592)
T 3ogk_B 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKL-DKCS 149 (592)
T ss_dssp CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEEEE-ESCE
T ss_pred CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEEEC-cCCC
Confidence 5678888887766543 2232222 56777777777763 2211 111 1122 3777777 6665
Q ss_pred cccccchhcccccCCccceEEeccC
Q 045261 65 MLYKGLVQWGLHRLTSLRWLLIERC 89 (227)
Q Consensus 65 ~l~~~~~~~~~~~l~~L~~L~l~~~ 89 (227)
.+...........+++|++|++++|
T Consensus 150 ~~~~~~l~~~~~~~~~L~~L~L~~~ 174 (592)
T 3ogk_B 150 GFTTDGLLSIVTHCRKIKTLLMEES 174 (592)
T ss_dssp EEEHHHHHHHHHHCTTCSEEECTTC
T ss_pred CcCHHHHHHHHhhCCCCCEEECccc
Confidence 4432222222345666666666665
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=98.80 E-value=6.5e-11 Score=99.54 Aligned_cols=130 Identities=15% Similarity=0.192 Sum_probs=69.7
Q ss_pred CCCccEEEeccCCCCC-----cCCcccCCCCCcceEeecCCCCCcccCC--C-CCCC----CcceeEeccCccccccc--
Q 045261 4 PESISSVEIRRCEKLG-----ALPSDMHKLNSLQDLDIRECPSIVSFPE--E-GFPT----NLTSLAIGEDMKMLYKG-- 69 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~-----~lp~~~~~l~~L~~L~l~~c~~l~~~~~--~-~~l~----~L~~L~l~~~~~~l~~~-- 69 (227)
+++|+.|++++|. ++ .++..+..+++|++|+++++. +..... . ..+. +|++|++ ++|. +.+.
T Consensus 27 ~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L-~~n~-i~~~~~ 102 (461)
T 1z7x_W 27 LQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSL-QNCC-LTGAGC 102 (461)
T ss_dssp HTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEEC-TTSC-CBGGGH
T ss_pred cCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEc-cCCC-CCHHHH
Confidence 4567777777764 33 344556667777777777754 332111 0 1222 6777777 6653 3311
Q ss_pred -chhcccccCCccceEEeccCCCCCcc-----CccCcCCCCCCccceEEEecCCCccc-----cCCCCCCccCCCCccEE
Q 045261 70 -LVQWGLHRLTSLRWLLIERCDESECF-----PDGMMGMTLPTSLVHLNIVEFQKLKN-----LSSSSSGFHSLTSLRRL 138 (227)
Q Consensus 70 -~~~~~~~~l~~L~~L~l~~~~~l~~l-----~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~l~~l~~L~~L 138 (227)
..+..+..+++|++|+++++. +... ..... ...++|++|++++| .+.. ++ ..+..+++|++|
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~--~~~~~L~~L~L~~n-~l~~~~~~~l~---~~l~~~~~L~~L 175 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLL--DPQCRLEKLQLEYC-SLSAASCEPLA---SVLRAKPDFKEL 175 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHT--STTCCCCEEECTTS-CCBGGGHHHHH---HHHHHCTTCCEE
T ss_pred HHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHh--cCCCcceEEECCCC-CCCHHHHHHHH---HHHhhCCCCCEE
Confidence 223456677777777777763 3321 11111 02346777777664 3322 22 334455677777
Q ss_pred eecCCC
Q 045261 139 LIQDCP 144 (227)
Q Consensus 139 ~l~~c~ 144 (227)
+++++.
T Consensus 176 ~L~~n~ 181 (461)
T 1z7x_W 176 TVSNND 181 (461)
T ss_dssp ECCSSB
T ss_pred ECcCCC
Confidence 776643
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.8e-08 Score=78.69 Aligned_cols=168 Identities=14% Similarity=0.111 Sum_probs=113.3
Q ss_pred CCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccC-----------------c
Q 045261 4 PESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGED-----------------M 63 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~-----------------~ 63 (227)
+++|+.|++.+ .++.++ ..+.++++|+.+++.+. .+..++.. ..+.++..+.. .. |
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~-~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPL-GSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECT-TCTHHHHTSTTTTTSCEEES
T ss_pred cCCCcEEECCc--cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecC-cchhhhhccccccccccccc
Confidence 68899999987 567776 46889999999999875 35555554 33344444433 11 1
Q ss_pred ccccc--------cch---------h------------------cccccCCccceEEeccCCCCCccCccCcCCCCCCcc
Q 045261 64 KMLYK--------GLV---------Q------------------WGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSL 108 (227)
Q Consensus 64 ~~l~~--------~~~---------~------------------~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L 108 (227)
..+.. .+. + .....+++|+.+++.++ .++.++.... ..+++|
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF--~~~~~L 252 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTF--AQKKYL 252 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTT--TTCTTC
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhh--hCCCCC
Confidence 11110 000 0 00013789999999986 6888887654 368899
Q ss_pred ceEEEecCCCccccCCCCCCccCCCCcc-EEeecCCCCCccCCCCC--CCCccceeeecCCCCCCCCCCCCC--CCCCcE
Q 045261 109 VHLNIVEFQKLKNLSSSSSGFHSLTSLR-RLLIQDCPNLTSLPKVG--LPSSLLDLCIFNCPNLTSLPKVGL--PSSLLE 183 (227)
Q Consensus 109 ~~L~l~~~~~l~~l~~~~~~l~~l~~L~-~L~l~~c~~l~~~~~~~--~~~~L~~l~i~~c~~l~~~~~~~~--~~~L~~ 183 (227)
+++++.+ ++..++ ...|.++++|+ .+++.+ .+..++... .+++|+.+++.. ..++.++...+ +++|++
T Consensus 253 ~~l~l~~--ni~~I~--~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 253 LKIKLPH--NLKTIG--QRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKL 325 (329)
T ss_dssp CEEECCT--TCCEEC--TTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCE
T ss_pred CEEECCc--ccceeh--HHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-CccCccchhhhcCCcchhh
Confidence 9999987 388887 68899999999 999988 677887653 356899998865 35666665433 677777
Q ss_pred Ee
Q 045261 184 LT 185 (227)
Q Consensus 184 L~ 185 (227)
++
T Consensus 326 ly 327 (329)
T 3sb4_A 326 IY 327 (329)
T ss_dssp EE
T ss_pred hc
Confidence 65
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.79 E-value=5e-08 Score=71.11 Aligned_cols=102 Identities=25% Similarity=0.356 Sum_probs=65.4
Q ss_pred cceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCccce
Q 045261 31 LQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVH 110 (227)
Q Consensus 31 L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~ 110 (227)
.+.+++++. .+..+|.. ..++|+.|++ ++ +.++ .+.+..+..+++|++|+++++ .++.++.... ..+++|++
T Consensus 11 ~~~l~~s~n-~l~~ip~~-~~~~l~~L~L-~~-N~i~-~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f--~~l~~L~~ 82 (170)
T 3g39_A 11 GTTVDCSGK-SLASVPTG-IPTTTQVLYL-YD-NQIT-KLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVF--DKLTQLTQ 82 (170)
T ss_dssp TTEEECTTS-CCSSCCSC-CCTTCSEEEC-CS-SCCC-CCCTTTTTTCTTCSEEECCSS-CCCCCCTTTT--TTCTTCCE
T ss_pred CCEEEeCCC-CcCccCcc-CCCCCcEEEc-CC-CcCC-ccChhhhcCcccCCEEECCCC-CcCccChhhc--cCCCCCCE
Confidence 356666653 35556653 3467777777 54 4554 444555677777788877776 5666665432 15677888
Q ss_pred EEEecCCCccccCCCCCCccCCCCccEEeecCC
Q 045261 111 LNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDC 143 (227)
Q Consensus 111 L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c 143 (227)
|++++ +.+..++ ...+.++++|++|+++++
T Consensus 83 L~L~~-N~l~~~~--~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 83 LSLND-NQLKSIP--RGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp EECCS-SCCCCCC--TTTTTTCTTCCEEECCSS
T ss_pred EECCC-CccCEeC--HHHhcCCCCCCEEEeCCC
Confidence 88877 5666666 345777778888888774
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.78 E-value=6e-08 Score=71.01 Aligned_cols=101 Identities=20% Similarity=0.350 Sum_probs=71.0
Q ss_pred ceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCccceE
Q 045261 32 QDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHL 111 (227)
Q Consensus 32 ~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L 111 (227)
+.+++++. .+..+|.. ..++|+.|++ ++ +.+. .+.+..+..+++|++|+++++ .++.+|.... ..+++|+.|
T Consensus 15 ~~l~~~~n-~l~~iP~~-~~~~L~~L~L-s~-N~l~-~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~--~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAG-IPTDKQRLWL-NN-NQIT-KLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVF--DKLTQLTQL 86 (174)
T ss_dssp SEEECCSS-CCSSCCSC-CCTTCSEEEC-CS-SCCC-CCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT--TTCTTCCEE
T ss_pred cEEEeCCC-CCCccCCC-cCCCCcEEEe-CC-CCcc-ccCHHHhcCCcCCCEEECCCC-CCCccChhHh--CCcchhhEE
Confidence 56666664 46666663 4478888888 55 5555 444556778888888888886 7777776542 157888888
Q ss_pred EEecCCCccccCCCCCCccCCCCccEEeecCC
Q 045261 112 NIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDC 143 (227)
Q Consensus 112 ~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c 143 (227)
++++ +.+..++ ...+..+++|++|+++++
T Consensus 87 ~L~~-N~l~~l~--~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 87 DLND-NHLKSIP--RGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp ECCS-SCCCCCC--TTTTTTCTTCSEEECCSS
T ss_pred ECCC-CccceeC--HHHhccccCCCEEEeCCC
Confidence 8887 6777777 344778888888888884
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=98.78 E-value=8.1e-11 Score=98.98 Aligned_cols=175 Identities=18% Similarity=0.086 Sum_probs=93.1
Q ss_pred CCccEEEeccCCCCCc-----CCcccCCCCCcceEeecCCCCCcccC-----CC--CCCCCcceeEeccCcccccccc--
Q 045261 5 ESISSVEIRRCEKLGA-----LPSDMHKLNSLQDLDIRECPSIVSFP-----EE--GFPTNLTSLAIGEDMKMLYKGL-- 70 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~c~~l~~~~-----~~--~~l~~L~~L~l~~~~~~l~~~~-- 70 (227)
++|+.|++++|. ++. ++..+..+++|++|+++++. +.... .. ..+++|+.|++ ++| .+++..
T Consensus 199 ~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L-~~n-~l~~~~~~ 274 (461)
T 1z7x_W 199 CQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWI-WEC-GITAKGCG 274 (461)
T ss_dssp CCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEEC-TTS-CCCHHHHH
T ss_pred CCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEEC-cCC-CCCHHHHH
Confidence 456666666653 222 34445556666677666653 33211 11 23566777777 654 333110
Q ss_pred -hhcccccCCccceEEeccCCCCCc-----cCccCcCCCCCCccceEEEecCCCccc----cCCCCCCccCCCCccEEee
Q 045261 71 -VQWGLHRLTSLRWLLIERCDESEC-----FPDGMMGMTLPTSLVHLNIVEFQKLKN----LSSSSSGFHSLTSLRRLLI 140 (227)
Q Consensus 71 -~~~~~~~l~~L~~L~l~~~~~l~~-----l~~~~~~~~~~~~L~~L~l~~~~~l~~----l~~~~~~l~~l~~L~~L~l 140 (227)
.+..+..+++|++|+++++ .+.. +..... ...++|++|++++|.--.. ++ ..+..+++|++|++
T Consensus 275 ~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~--~~~~~L~~L~L~~n~l~~~~~~~l~---~~l~~~~~L~~L~L 348 (461)
T 1z7x_W 275 DLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLL--EPGCQLESLWVKSCSFTAACCSHFS---SVLAQNRFLLELQI 348 (461)
T ss_dssp HHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHT--STTCCCCEEECTTSCCBGGGHHHHH---HHHHHCSSCCEEEC
T ss_pred HHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhc--cCCccceeeEcCCCCCchHHHHHHH---HHHhhCCCccEEEc
Confidence 1223455677777777765 3322 111111 0235777777777542211 33 44556688888888
Q ss_pred cCCCCCccCCCC-------CCCCccceeeecCCCCCC----CCCCC-CCCCCCcEEeecCCc
Q 045261 141 QDCPNLTSLPKV-------GLPSSLLDLCIFNCPNLT----SLPKV-GLPSSLLELTIFDCP 190 (227)
Q Consensus 141 ~~c~~l~~~~~~-------~~~~~L~~l~i~~c~~l~----~~~~~-~~~~~L~~L~l~~c~ 190 (227)
+++ .++..+.. ...++|++|++++|..-. .++.. ..+++|++|++++|+
T Consensus 349 s~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 349 SNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp CSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred cCC-ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 875 44432111 114578888888875322 33321 236788888888875
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.76 E-value=7.2e-08 Score=70.26 Aligned_cols=101 Identities=22% Similarity=0.270 Sum_probs=79.9
Q ss_pred CccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 6 SISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 6 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
..+.+++++ ..++++|..+ .++|++|+++++ .+..+++. ..+++|++|++ ++ +.++ .+++..+..+++|++
T Consensus 10 ~~~~l~~s~-n~l~~ip~~~--~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L-s~-N~l~-~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 10 SGTTVDCSG-KSLASVPTGI--PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDL-DN-NQLT-VLPAGVFDKLTQLTQ 82 (170)
T ss_dssp ETTEEECTT-SCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEEC-CS-SCCC-CCCTTTTTTCTTCCE
T ss_pred CCCEEEeCC-CCcCccCccC--CCCCcEEEcCCC-cCCccChhhhcCcccCCEEEC-CC-CCcC-ccChhhccCCCCCCE
Confidence 357789998 4678888766 388999999986 47777543 78899999999 66 5676 666666789999999
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecC
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEF 116 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~ 116 (227)
|+++++ .++.++.... ..+++|+.|+++++
T Consensus 83 L~L~~N-~l~~~~~~~~--~~l~~L~~L~L~~N 112 (170)
T 3g39_A 83 LSLNDN-QLKSIPRGAF--DNLKSLTHIWLLNN 112 (170)
T ss_dssp EECCSS-CCCCCCTTTT--TTCTTCCEEECCSS
T ss_pred EECCCC-ccCEeCHHHh--cCCCCCCEEEeCCC
Confidence 999997 7888877532 26899999999984
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.75 E-value=1.1e-11 Score=93.03 Aligned_cols=112 Identities=15% Similarity=0.156 Sum_probs=65.2
Q ss_pred CcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCcc
Q 045261 19 GALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDG 98 (227)
Q Consensus 19 ~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~ 98 (227)
..+|..+..+++|++|+++++. +..++....+++|+.|++ ++ +.+. .+ +..+..+++|++|+++++ .+..+|.
T Consensus 38 ~~l~~~~~~l~~L~~L~ls~n~-l~~l~~~~~l~~L~~L~l-~~-n~l~-~l-~~~~~~~~~L~~L~L~~N-~l~~l~~- 110 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALSTNN-IEKISSLSGMENLRILSL-GR-NLIK-KI-ENLDAVADTLEELWISYN-QIASLSG- 110 (198)
T ss_dssp CCCHHHHHHTTTCSEEECSEEE-ESCCCCHHHHTTCCEEEE-EE-EEEC-SC-SSHHHHHHHCSEEEEEEE-ECCCHHH-
T ss_pred hhhhHHHhcCCCCCEEECCCCC-CccccccccCCCCCEEEC-CC-CCcc-cc-cchhhcCCcCCEEECcCC-cCCcCCc-
Confidence 3344466777777777777653 555552255677777777 55 3343 32 223455567777777765 5555552
Q ss_pred CcCCCCCCccceEEEecCCCccccCCCC-CCccCCCCccEEeecCC
Q 045261 99 MMGMTLPTSLVHLNIVEFQKLKNLSSSS-SGFHSLTSLRRLLIQDC 143 (227)
Q Consensus 99 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~l~~l~~L~~L~l~~c 143 (227)
+. .+++|+.|++++ +.+..++ . ..+..+++|++|+++++
T Consensus 111 ~~---~l~~L~~L~l~~-N~i~~~~--~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 111 IE---KLVNLRVLYMSN-NKITNWG--EIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HH---HHHHSSEEEESE-EECCCHH--HHHHHTTTTTCSEEEECSC
T ss_pred cc---cCCCCCEEECCC-CcCCchh--HHHHHhcCCCCCEEEecCC
Confidence 32 456777777776 3444443 1 24556677777777664
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.74 E-value=9.2e-08 Score=70.00 Aligned_cols=104 Identities=18% Similarity=0.220 Sum_probs=81.1
Q ss_pred cEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCccceEE
Q 045261 8 SSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLL 85 (227)
Q Consensus 8 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~ 85 (227)
+.+++++ ..++++|..+. ++|++|+++++. +..+++. ..+++|+.|++ ++ +.++ .+++..+..+++|++|+
T Consensus 15 ~~l~~~~-n~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L-s~-N~l~-~i~~~~~~~l~~L~~L~ 87 (174)
T 2r9u_A 15 TLVNCQN-IRLASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYF-NS-NKLT-AIPTGVFDKLTQLTQLD 87 (174)
T ss_dssp SEEECCS-SCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC-CS-SCCC-CCCTTTTTTCTTCCEEE
T ss_pred cEEEeCC-CCCCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEEC-CC-CCCC-ccChhHhCCcchhhEEE
Confidence 5788888 46788987664 889999999864 7767543 78899999999 66 5676 55665678999999999
Q ss_pred eccCCCCCccCcc-CcCCCCCCccceEEEecCCCccccC
Q 045261 86 IERCDESECFPDG-MMGMTLPTSLVHLNIVEFQKLKNLS 123 (227)
Q Consensus 86 l~~~~~l~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~ 123 (227)
++++ .+..+|.. +. .+++|+.|++++ +.+...+
T Consensus 88 L~~N-~l~~l~~~~~~---~l~~L~~L~L~~-N~~~c~~ 121 (174)
T 2r9u_A 88 LNDN-HLKSIPRGAFD---NLKSLTHIYLYN-NPWDCEC 121 (174)
T ss_dssp CCSS-CCCCCCTTTTT---TCTTCSEEECCS-SCBCTTB
T ss_pred CCCC-ccceeCHHHhc---cccCCCEEEeCC-CCccccc
Confidence 9997 78888875 43 689999999998 4554443
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.7e-10 Score=86.34 Aligned_cols=124 Identities=14% Similarity=0.201 Sum_probs=92.6
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccc
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLR 82 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~ 82 (227)
+++|+.|++++| .+..+| .+.++++|++|+++++. +..+|.. ..+++|+.|++ ++ +.+. .+ + .+..+++|+
T Consensus 47 l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L-~~-N~l~-~l-~-~~~~l~~L~ 118 (198)
T 1ds9_A 47 LKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWI-SY-NQIA-SL-S-GIEKLVNLR 118 (198)
T ss_dssp TTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEE-EE-EECC-CH-H-HHHHHHHSS
T ss_pred CCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEEC-cC-CcCC-cC-C-ccccCCCCC
Confidence 578999999996 567788 78999999999999974 6677765 56689999999 76 4565 33 3 478899999
Q ss_pred eEEeccCCCCCccCc--cCcCCCCCCccceEEEecCCCccccCCC-------CCCccCCCCccEEe
Q 045261 83 WLLIERCDESECFPD--GMMGMTLPTSLVHLNIVEFQKLKNLSSS-------SSGFHSLTSLRRLL 139 (227)
Q Consensus 83 ~L~l~~~~~l~~l~~--~~~~~~~~~~L~~L~l~~~~~l~~l~~~-------~~~l~~l~~L~~L~ 139 (227)
+|+++++ .+..++. .+. .+++|++|+++++.-....|.. ...+..+++|+.|+
T Consensus 119 ~L~l~~N-~i~~~~~~~~l~---~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 119 VLYMSNN-KITNWGEIDKLA---ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEEESEE-ECCCHHHHHHHT---TTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EEECCCC-cCCchhHHHHHh---cCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 9999997 6666554 343 6899999999985332323300 01266788999887
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.3e-07 Score=76.68 Aligned_cols=100 Identities=17% Similarity=0.065 Sum_probs=78.3
Q ss_pred EEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCccceEEe
Q 045261 9 SVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLI 86 (227)
Q Consensus 9 ~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l 86 (227)
.++.++...++.+|. +..+++|+.|++++...+..++.. ..+++|+.|++ ++ +.++ .+.+..+..+++|++|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l-~~-N~l~-~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI-VK-SGLR-FVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEEC-CS-SCCC-EECTTGGGSCSCCCEEEC
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEEC-CC-Cccc-eeCHHHhcCCcCCCEEeC
Confidence 467777547888999 999999999999875568888754 78899999999 66 5676 556667889999999999
Q ss_pred ccCCCCCccCccCcCCCCCCccceEEEecC
Q 045261 87 ERCDESECFPDGMMGMTLPTSLVHLNIVEF 116 (227)
Q Consensus 87 ~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~ 116 (227)
+++ .+..+|.... ...+|+.|++.++
T Consensus 88 ~~N-~l~~~~~~~~---~~~~L~~l~l~~N 113 (347)
T 2ifg_A 88 SFN-ALESLSWKTV---QGLSLQELVLSGN 113 (347)
T ss_dssp CSS-CCSCCCSTTT---CSCCCCEEECCSS
T ss_pred CCC-ccceeCHHHc---ccCCceEEEeeCC
Confidence 987 7778887654 2234999999874
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.7e-08 Score=73.75 Aligned_cols=88 Identities=15% Similarity=0.121 Sum_probs=59.5
Q ss_pred CCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccC----CccceEEeccCCCCCccCccCcCC
Q 045261 29 NSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRL----TSLRWLLIERCDESECFPDGMMGM 102 (227)
Q Consensus 29 ~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l----~~L~~L~l~~~~~l~~l~~~~~~~ 102 (227)
..|++|++++|. +.+.... ..+++|+.|++ ++|..+++.... .+..+ ++|++|++++|..+++-.....
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L-~~C~~ItD~gL~-~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-- 135 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRL-CKCHYIEDGCLE-RLSQLENLQKSMLEMEIISCGNVTDKGIIAL-- 135 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEE-ESCTTCCHHHHH-HHHTCHHHHHHCCEEEEESCTTCCHHHHHHG--
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEe-CCCCccCHHHHH-HHHhcccccCCCCEEEcCCCCcCCHHHHHHH--
Confidence 358888888886 5543322 67888888888 888888744333 23332 4688888888877766332211
Q ss_pred CCCCccceEEEecCCCccc
Q 045261 103 TLPTSLVHLNIVEFQKLKN 121 (227)
Q Consensus 103 ~~~~~L~~L~l~~~~~l~~ 121 (227)
..+++|++|++++|..+++
T Consensus 136 ~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GGCTTCCEEEEESCTTCCC
T ss_pred hcCCCCCEEECCCCCCCCc
Confidence 2568888888888887765
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.60 E-value=9.3e-09 Score=75.11 Aligned_cols=87 Identities=15% Similarity=0.224 Sum_probs=64.5
Q ss_pred CCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCC------CCccceeeecCCCCCCCCCC--CC
Q 045261 105 PTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGL------PSSLLDLCIFNCPNLTSLPK--VG 176 (227)
Q Consensus 105 ~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~------~~~L~~l~i~~c~~l~~~~~--~~ 176 (227)
-..|++|++++|. +++.. ...+.++++|++|++++|..+++-.-... .++|++|++++|+.+++-.. ..
T Consensus 60 ~~~L~~LDLs~~~-Itd~G--L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 60 KYKIQAIDATDSC-IMSIG--FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCCEEEEEEESCC-CCGGG--GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred CceEeEEeCcCCC-ccHHH--HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 3479999999986 65533 34567889999999999988766322211 24799999999998886432 23
Q ss_pred CCCCCcEEeecCCchhhh
Q 045261 177 LPSSLLELTIFDCPKLRK 194 (227)
Q Consensus 177 ~~~~L~~L~l~~c~~l~~ 194 (227)
.+++|++|++++|++++.
T Consensus 137 ~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GCTTCCEEEEESCTTCCC
T ss_pred cCCCCCEEECCCCCCCCc
Confidence 479999999999998874
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.57 E-value=5e-06 Score=68.81 Aligned_cols=120 Identities=11% Similarity=0.154 Sum_probs=61.1
Q ss_pred ccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccceE
Q 045261 7 ISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWL 84 (227)
Q Consensus 7 L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L 84 (227)
|+.+.+.+ .+..+. ..+.++++|+.+++..+ .+..++.. -...+|+.+.+ .+ .+. .+....|..+++|+.+
T Consensus 159 L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~l-p~--~l~-~I~~~aF~~~~~L~~l 231 (401)
T 4fdw_A 159 VQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLL-PV--TLK-EIGSQAFLKTSQLKTI 231 (401)
T ss_dssp CCEEECCT--TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEEC-CT--TCC-EECTTTTTTCTTCCCE
T ss_pred ceEEEeCC--CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEe-CC--chh-eehhhHhhCCCCCCEE
Confidence 44444443 233333 34566666777766543 35555544 22456666666 32 232 3444556666677777
Q ss_pred EeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecC
Q 045261 85 LIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQD 142 (227)
Q Consensus 85 ~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~ 142 (227)
.+.. .++.++.... .-.+|+.+.+. +.+..++ ...+.++++|+.+.+.+
T Consensus 232 ~l~~--~l~~I~~~aF---~~~~L~~i~lp--~~i~~I~--~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 232 EIPE--NVSTIGQEAF---RESGITTVKLP--NGVTNIA--SRAFYYCPELAEVTTYG 280 (401)
T ss_dssp ECCT--TCCEECTTTT---TTCCCSEEEEE--TTCCEEC--TTTTTTCTTCCEEEEES
T ss_pred ecCC--CccCcccccc---ccCCccEEEeC--CCccEEC--hhHhhCCCCCCEEEeCC
Confidence 7664 3444444332 11455555553 2444444 35555555666655544
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.57 E-value=2.4e-06 Score=70.80 Aligned_cols=167 Identities=10% Similarity=0.143 Sum_probs=114.1
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
-+++|+.+++++ +.+..++...-...+|+.+.+.. .+..++.. ..+++|+.+.+ .+ +++ .+....|.. .+
T Consensus 178 ~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l-~~--~l~-~I~~~aF~~-~~ 249 (401)
T 4fdw_A 178 YCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEI-PE--NVS-TIGQEAFRE-SG 249 (401)
T ss_dssp TCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEEC-CT--TCC-EECTTTTTT-CC
T ss_pred CcccCCeeecCC-CcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEec-CC--Ccc-Ccccccccc-CC
Confidence 367899999987 45777775544468899999874 47777766 67888999998 54 343 444555666 67
Q ss_pred cceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCcc-----ccCCCCCCccCCCCccEEeecCCCCCccCCCCCC-
Q 045261 81 LRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLK-----NLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGL- 154 (227)
Q Consensus 81 L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~-----~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~- 154 (227)
|+.+.+.+ .++.++.... ..+++|+.+.+.+. ... .++ ...+.++++|+.+.+.+ .+..++...+
T Consensus 250 L~~i~lp~--~i~~I~~~aF--~~c~~L~~l~l~~~-~~~~~~~~~I~--~~aF~~c~~L~~l~l~~--~i~~I~~~aF~ 320 (401)
T 4fdw_A 250 ITTVKLPN--GVTNIASRAF--YYCPELAEVTTYGS-TFNDDPEAMIH--PYCLEGCPKLARFEIPE--SIRILGQGLLG 320 (401)
T ss_dssp CSEEEEET--TCCEECTTTT--TTCTTCCEEEEESS-CCCCCTTCEEC--TTTTTTCTTCCEECCCT--TCCEECTTTTT
T ss_pred ccEEEeCC--CccEEChhHh--hCCCCCCEEEeCCc-cccCCcccEEC--HHHhhCCccCCeEEeCC--ceEEEhhhhhc
Confidence 88888854 4666655443 26788888888762 322 355 57788888888888874 4677766533
Q ss_pred -CCccceeeecCCCCCCCCCCCCC--CCCCcEEeecCC
Q 045261 155 -PSSLLDLCIFNCPNLTSLPKVGL--PSSLLELTIFDC 189 (227)
Q Consensus 155 -~~~L~~l~i~~c~~l~~~~~~~~--~~~L~~L~l~~c 189 (227)
+++|+.+.+.+ .++.+....+ + +|+.+.+.+.
T Consensus 321 ~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 321 GNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS
T ss_pred CCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC
Confidence 45788888754 3555554333 5 7888888765
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.1e-06 Score=70.96 Aligned_cols=102 Identities=25% Similarity=0.257 Sum_probs=76.3
Q ss_pred eEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCcc-CcCCCCCCccceE
Q 045261 33 DLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDG-MMGMTLPTSLVHL 111 (227)
Q Consensus 33 ~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~~~~L~~L 111 (227)
.++.++...+..+|....+++|+.|++ ++.+.+. .+++..+..+++|++|+++++ .+..++.. +. .+++|+.|
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l-~~~n~l~-~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~---~l~~L~~L 85 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYI-ENQQHLQ-HLELRDLRGLGELRNLTIVKS-GLRFVAPDAFH---FTPRLSRL 85 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEEC-CSCSSCC-EECGGGSCSCCCCSEEECCSS-CCCEECTTGGG---SCSCCCEE
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEc-cCCCCCC-CcChhHhccccCCCEEECCCC-ccceeCHHHhc---CCcCCCEE
Confidence 455555435677776566788999999 7667776 566667899999999999998 67777654 33 68999999
Q ss_pred EEecCCCccccCCCCCCccCCCCccEEeecCCC
Q 045261 112 NIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCP 144 (227)
Q Consensus 112 ~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~ 144 (227)
++++ +.+..+| ...+..++ |+.|++.+++
T Consensus 86 ~l~~-N~l~~~~--~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 86 NLSF-NALESLS--WKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp ECCS-SCCSCCC--STTTCSCC-CCEEECCSSC
T ss_pred eCCC-CccceeC--HHHcccCC-ceEEEeeCCC
Confidence 9998 7888887 34455555 9999998843
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.3e-07 Score=75.80 Aligned_cols=129 Identities=16% Similarity=0.012 Sum_probs=60.4
Q ss_pred CCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCc-cCcCCCCCCccceEEEecCCC-------ccc
Q 045261 50 FPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPD-GMMGMTLPTSLVHLNIVEFQK-------LKN 121 (227)
Q Consensus 50 ~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~~~~L~~L~l~~~~~-------l~~ 121 (227)
.+++|+.|.+ .++..+. . + .+ .+++|++|++..| .+..-.. .+. ...+|+|++|+++.+.+ +..
T Consensus 170 ~~P~L~~L~L-~g~~~l~--l-~-~~-~~~~L~~L~L~~~-~l~~~~l~~l~-~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 170 AMPLLNNLKI-KGTNNLS--I-G-KK-PRPNLKSLEIISG-GLPDSVVEDIL-GSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp TCTTCCEEEE-ECCBTCB--C-C-SC-BCTTCSEEEEECS-BCCHHHHHHHH-HSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred cCCCCcEEEE-eCCCCce--e-c-cc-cCCCCcEEEEecC-CCChHHHHHHH-HccCCCCcEEEEeccccccccchhHHH
Confidence 4566777766 5542221 1 1 12 2566777766654 2211100 000 01356677776642111 111
Q ss_pred cCCCCCCc--cCCCCccEEeecCCCCCcc----CCCCCCCCccceeeecCCCCCCC-----CCCC-CCCCCCcEEeecCC
Q 045261 122 LSSSSSGF--HSLTSLRRLLIQDCPNLTS----LPKVGLPSSLLDLCIFNCPNLTS-----LPKV-GLPSSLLELTIFDC 189 (227)
Q Consensus 122 l~~~~~~l--~~l~~L~~L~l~~c~~l~~----~~~~~~~~~L~~l~i~~c~~l~~-----~~~~-~~~~~L~~L~l~~c 189 (227)
+. ..+ ..+++|++|.+.+|..... +.....+++|++|+++.+ .+++ +... ..+++|+.|++++|
T Consensus 242 l~---~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 242 FR---PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TG---GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HH---HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC
Confidence 11 111 2467777777766542211 111124567777777653 3443 1111 13577888888877
Q ss_pred c
Q 045261 190 P 190 (227)
Q Consensus 190 ~ 190 (227)
.
T Consensus 318 ~ 318 (362)
T 2ra8_A 318 Y 318 (362)
T ss_dssp B
T ss_pred c
Confidence 4
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.22 E-value=5.2e-07 Score=73.70 Aligned_cols=158 Identities=16% Similarity=0.028 Sum_probs=95.9
Q ss_pred CCCccEEEeccCCC---------CCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhc-
Q 045261 4 PESISSVEIRRCEK---------LGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQW- 73 (227)
Q Consensus 4 ~~~L~~L~l~~~~~---------l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~- 73 (227)
+++|+.|.+.+... ...+...+..+|+|++|.++++..+ .++. ..+++|+.|.+ ..|. +.......
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~~~~L~~L~L-~~~~-l~~~~l~~l 213 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KPRPNLKSLEI-ISGG-LPDSVVEDI 213 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CBCTTCSEEEE-ECSB-CCHHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-ccCCCCcEEEE-ecCC-CChHHHHHH
Confidence 57999999976421 1124445577899999999987433 2333 24789999999 7654 43221111
Q ss_pred ccccCCccceEEeccCC-------CCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCC
Q 045261 74 GLHRLTSLRWLLIERCD-------ESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNL 146 (227)
Q Consensus 74 ~~~~l~~L~~L~l~~~~-------~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l 146 (227)
....+++|++|+++.+. .+..+...... ..+|+|+.|++.+|...............+++|++|+++. +.+
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~-~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L 291 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK-DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVL 291 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT-TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCC
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhc-CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCC
Confidence 12378999999986311 12222222210 1479999999998654322210001112578999999977 556
Q ss_pred ccC-----CCC-CCCCccceeeecCCC
Q 045261 147 TSL-----PKV-GLPSSLLDLCIFNCP 167 (227)
Q Consensus 147 ~~~-----~~~-~~~~~L~~l~i~~c~ 167 (227)
+.. +.. ...++|+.|++++|.
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCc
Confidence 552 221 245789999998874
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.94 E-value=1e-07 Score=78.26 Aligned_cols=151 Identities=13% Similarity=0.131 Sum_probs=77.3
Q ss_pred CCCccEEEeccCCCCCc-----CCcccC-CCCCcceEeecCCCCCcccC--CC-CCCCCcceeEeccCcccccccchh--
Q 045261 4 PESISSVEIRRCEKLGA-----LPSDMH-KLNSLQDLDIRECPSIVSFP--EE-GFPTNLTSLAIGEDMKMLYKGLVQ-- 72 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~-----lp~~~~-~l~~L~~L~l~~c~~l~~~~--~~-~~l~~L~~L~l~~~~~~l~~~~~~-- 72 (227)
.++|+.|++++|. ++. +...+. ..++|++|++++|. +.... .. ..+++|+.|++ ++| .+.+....
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~L-s~n-~l~~~~~~~L 146 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGL-QLN-SLGPEACKDL 146 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEEC-CSS-CCCHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhc-CCC-CCCHHHHHHH
Confidence 3567777777764 332 111222 23577777777764 32211 11 23456777777 664 34311111
Q ss_pred -ccc-ccCCccceEEeccCCCCCc-----cCccCcCCCCCCccceEEEecCCCccc-----cCCCCCCccCCCCccEEee
Q 045261 73 -WGL-HRLTSLRWLLIERCDESEC-----FPDGMMGMTLPTSLVHLNIVEFQKLKN-----LSSSSSGFHSLTSLRRLLI 140 (227)
Q Consensus 73 -~~~-~~l~~L~~L~l~~~~~l~~-----l~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~l~~l~~L~~L~l 140 (227)
..+ ...++|++|++++| .+.. +...+. ..++|++|++++| .+.+ +. ..+...++|++|++
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~---~~~~L~~L~Ls~N-~l~~~g~~~L~---~~L~~~~~L~~L~L 218 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLA---GNTSVTHLSLLHT-GLGDEGLELLA---AQLDRNRQLQELNV 218 (372)
T ss_dssp HHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHH---TCSSCCEEECTTS-SCHHHHHHHHH---HHGGGCSCCCEEEC
T ss_pred HHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHh---cCCCcCEEeCCCC-CCCcHHHHHHH---HHHhcCCCcCeEEC
Confidence 011 23466777777776 4433 222222 4566777777774 3433 22 34455667777777
Q ss_pred cCCCCCccCCCC------CCCCccceeeecCCC
Q 045261 141 QDCPNLTSLPKV------GLPSSLLDLCIFNCP 167 (227)
Q Consensus 141 ~~c~~l~~~~~~------~~~~~L~~l~i~~c~ 167 (227)
++| .++..+.. ...++|++|++++|.
T Consensus 219 s~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 219 AYN-GAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 774 34332111 123566777777654
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.68 E-value=7e-06 Score=67.28 Aligned_cols=153 Identities=14% Similarity=0.050 Sum_probs=97.2
Q ss_pred CCCcceEeecCCCCCcccC-----CC--CCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCc
Q 045261 28 LNSLQDLDIRECPSIVSFP-----EE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMM 100 (227)
Q Consensus 28 l~~L~~L~l~~c~~l~~~~-----~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~ 100 (227)
+++|++|++++|. +.... .. ....+|++|++ ++| .+.+.........+++|++|++++| .+........
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~L-s~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L 146 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNL-ASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDL 146 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEEC-TTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEe-cCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHH
Confidence 4678999999986 43221 11 24479999999 775 4542222223345678999999998 5543221110
Q ss_pred -CC--CCCCccceEEEecCCCccc-----cCCCCCCccCCCCccEEeecCCCCCccCCC------CCCCCccceeeecCC
Q 045261 101 -GM--TLPTSLVHLNIVEFQKLKN-----LSSSSSGFHSLTSLRRLLIQDCPNLTSLPK------VGLPSSLLDLCIFNC 166 (227)
Q Consensus 101 -~~--~~~~~L~~L~l~~~~~l~~-----l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~------~~~~~~L~~l~i~~c 166 (227)
.. ...++|++|++++| .+.. +. ..+...++|++|++++|. ++..+. -...++|++|++++|
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~---~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNN-PLTAAGVAVLM---EGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HHHHHSTTCCCCEEECCSS-CCHHHHHHHHH---HHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred HHHHHhcCCccceeeCCCC-CCChHHHHHHH---HHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 00 13578999999996 4543 33 445678999999999954 654221 123468999999997
Q ss_pred CCCCCCCC------CCCCCCCcEEeecCCc
Q 045261 167 PNLTSLPK------VGLPSSLLELTIFDCP 190 (227)
Q Consensus 167 ~~l~~~~~------~~~~~~L~~L~l~~c~ 190 (227)
. +++... ....++|++|++++|+
T Consensus 222 ~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 222 G-AGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp C-CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred C-CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 5 333211 1125789999999986
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00026 Score=55.09 Aligned_cols=79 Identities=16% Similarity=0.176 Sum_probs=42.1
Q ss_pred CCCCCcceEeecCCCCCcccC---CC-CCCCCcceeEeccCcccccccchhcccccCC--ccceEEeccCCCCCccCc--
Q 045261 26 HKLNSLQDLDIRECPSIVSFP---EE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT--SLRWLLIERCDESECFPD-- 97 (227)
Q Consensus 26 ~~l~~L~~L~l~~c~~l~~~~---~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~--~L~~L~l~~~~~l~~l~~-- 97 (227)
.++++|++|+++++. +..++ .. ..+++|+.|++ ++ +.+.+. ..+..+. +|++|++.+++-...+|.
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~L-s~-N~i~~~---~~l~~l~~l~L~~L~L~~Npl~~~~~~~~ 240 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNL-SG-NELKSE---RELDKIKGLKLEELWLDGNSLCDTFRDQS 240 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEEC-TT-SCCCSG---GGGGGGTTSCCSEEECTTSTTGGGCSSHH
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEEC-CC-CccCCc---hhhhhcccCCcceEEccCCcCccccCcch
Confidence 356677777777653 44333 22 35677777777 44 455422 1223333 677777777644333431
Q ss_pred -----cCcCCCCCCccceEEE
Q 045261 98 -----GMMGMTLPTSLVHLNI 113 (227)
Q Consensus 98 -----~~~~~~~~~~L~~L~l 113 (227)
... .+|+|+.||-
T Consensus 241 ~y~~~il~---~~P~L~~LDg 258 (267)
T 3rw6_A 241 TYISAIRE---RFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHH---HCTTCCEESS
T ss_pred hHHHHHHH---HCcccCeECC
Confidence 111 4667776653
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.037 Score=44.84 Aligned_cols=33 Identities=12% Similarity=0.215 Sum_probs=13.7
Q ss_pred CCccceEEEecCCCccccCCCCCCccCCCCccEEee
Q 045261 105 PTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLI 140 (227)
Q Consensus 105 ~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l 140 (227)
+.+|+.+.+.+ +.+..++ ...+.++.+|+.+.+
T Consensus 285 c~~L~~i~l~~-~~i~~I~--~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 285 CSNLTKVVMDN-SAIETLE--PRVFMDCVKLSSVTL 317 (379)
T ss_dssp CTTCCEEEECC-TTCCEEC--TTTTTTCTTCCEEEC
T ss_pred ccccccccccc-cccceeh--hhhhcCCCCCCEEEc
Confidence 34444444433 2333333 234444444444444
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.012 Score=47.83 Aligned_cols=114 Identities=12% Similarity=0.135 Sum_probs=79.8
Q ss_pred ccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcC
Q 045261 24 DMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMG 101 (227)
Q Consensus 24 ~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 101 (227)
.+.++.+|+.+.+.. .+..++.. ..+.+|+.+.+ .. .+. .+....+..+.+|+.+.+.+. .++.++....
T Consensus 235 ~f~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l-~~--~i~-~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF- 306 (379)
T 4h09_A 235 AFYGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNF-YA--KVK-TVPYLLCSGCSNLTKVVMDNS-AIETLEPRVF- 306 (379)
T ss_dssp TTTTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEE-CC--CCS-EECTTTTTTCTTCCEEEECCT-TCCEECTTTT-
T ss_pred cccCCccceEEEcCC--CccEeCccccceeehhccccc-cc--cce-ecccccccccccccccccccc-ccceehhhhh-
Confidence 456777888888865 36666655 56788888888 43 233 344556788999999999864 6777765443
Q ss_pred CCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC
Q 045261 102 MTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV 152 (227)
Q Consensus 102 ~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~ 152 (227)
..+.+|+.+.+.+ +++.+. ...+.++.+|+++.+.. .++.+...
T Consensus 307 -~~c~~L~~i~lp~--~l~~I~--~~aF~~C~~L~~i~ip~--~v~~I~~~ 350 (379)
T 4h09_A 307 -MDCVKLSSVTLPT--ALKTIQ--VYAFKNCKALSTISYPK--SITLIESG 350 (379)
T ss_dssp -TTCTTCCEEECCT--TCCEEC--TTTTTTCTTCCCCCCCT--TCCEECTT
T ss_pred -cCCCCCCEEEcCc--cccEEH--HHHhhCCCCCCEEEECC--ccCEEchh
Confidence 2678999999864 577776 57788889999888754 25555543
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.026 Score=46.09 Aligned_cols=76 Identities=17% Similarity=0.145 Sum_probs=43.8
Q ss_pred CCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCC--CCccceeeecCCCCCCCCCCCC--CCC
Q 045261 104 LPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGL--PSSLLDLCIFNCPNLTSLPKVG--LPS 179 (227)
Q Consensus 104 ~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L~~l~i~~c~~l~~~~~~~--~~~ 179 (227)
.+.+|+.+.+.+ .+..++ ...+.++.+|+.+++.+ .++.++...+ ..+|+.+.+.. .++.+.... .|.
T Consensus 295 ~~~~L~~i~l~~--~i~~I~--~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIG--EEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCI 366 (394)
T ss_dssp TCTTCCEEEECT--TCCEEC--TTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCT
T ss_pred cccccccccccc--ccceec--hhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCC
Confidence 355667666643 455565 46677777777777754 3555655433 34666666643 244554432 256
Q ss_pred CCcEEeec
Q 045261 180 SLLELTIF 187 (227)
Q Consensus 180 ~L~~L~l~ 187 (227)
+|+++++.
T Consensus 367 ~L~~i~lp 374 (394)
T 4fs7_A 367 NLKKVELP 374 (394)
T ss_dssp TCCEEEEE
T ss_pred CCCEEEEC
Confidence 67776664
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00037 Score=51.09 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=27.9
Q ss_pred CCCCCcceEeecCCCCCcc-----cCCC-CCCCCcceeEeccCcccccccc---hhcccccCCccceEEeccC
Q 045261 26 HKLNSLQDLDIRECPSIVS-----FPEE-GFPTNLTSLAIGEDMKMLYKGL---VQWGLHRLTSLRWLLIERC 89 (227)
Q Consensus 26 ~~l~~L~~L~l~~c~~l~~-----~~~~-~~l~~L~~L~l~~~~~~l~~~~---~~~~~~~l~~L~~L~l~~~ 89 (227)
...++|++|++++|..+.. +... ...++|++|++ +++. +.+.. ....+...++|++|++++|
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~L-s~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSI-VGTR-SNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEEC-TTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEEC-cCCC-CChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 4456666666666522322 1111 33456666666 5432 32110 1112333455666666654
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.011 Score=48.37 Aligned_cols=110 Identities=15% Similarity=0.203 Sum_probs=69.0
Q ss_pred CcccCCC--CCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCc
Q 045261 42 IVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKL 119 (227)
Q Consensus 42 l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l 119 (227)
+..+... ..+.+|+.+.+ .+. .. .+....+..+++|+.+.+.. .++.++.... ..+.+|+++.+.+ ++
T Consensus 253 v~~i~~~aF~~c~~L~~i~l-p~~--~~-~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF--~~c~~L~~i~lp~--~v 322 (394)
T 4gt6_A 253 VARIETHAFDSCAYLASVKM-PDS--VV-SIGTGAFMNCPALQDIEFSS--RITELPESVF--AGCISLKSIDIPE--GI 322 (394)
T ss_dssp EEEECTTTTTTCSSCCEEEC-CTT--CC-EECTTTTTTCTTCCEEECCT--TCCEECTTTT--TTCTTCCEEECCT--TC
T ss_pred ceEcccceeeecccccEEec-ccc--cc-eecCcccccccccccccCCC--cccccCceee--cCCCCcCEEEeCC--cc
Confidence 4444443 56677787777 431 21 33445567778888887763 4666665443 2567888888754 46
Q ss_pred cccCCCCCCccCCCCccEEeecCCCCCccCCCCC--CCCccceeeecC
Q 045261 120 KNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVG--LPSSLLDLCIFN 165 (227)
Q Consensus 120 ~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~--~~~~L~~l~i~~ 165 (227)
+.+. ...+.++.+|+++.+.+ .+..++... ...+|+.+++.+
T Consensus 323 ~~I~--~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 323 TQIL--DDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp CEEC--TTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred cEeh--HhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 6665 56777888888888854 366666543 245677777664
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.00044 Score=50.69 Aligned_cols=105 Identities=14% Similarity=0.086 Sum_probs=64.9
Q ss_pred CCCccEEEeccCCCCCc-----CCcccCCCCCcceEeecCCCCCccc-----CCC-CCCCCcceeEeccCcccccccc--
Q 045261 4 PESISSVEIRRCEKLGA-----LPSDMHKLNSLQDLDIRECPSIVSF-----PEE-GFPTNLTSLAIGEDMKMLYKGL-- 70 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~c~~l~~~-----~~~-~~l~~L~~L~l~~~~~~l~~~~-- 70 (227)
.++|+.|++++|..++. +...+...++|++|++++|. +.+- ... ...++|++|++ ++ +.+.+..
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L-~~-N~i~~~g~~ 111 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNV-ES-NFISGSGIL 111 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEEC-CS-SCCCHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEEC-cC-CcCCHHHHH
Confidence 57899999999745542 34566778899999999985 4432 111 34578999999 66 4454221
Q ss_pred -hhcccccCCccceEEe--ccCCCCCc-----cCccCcCCCCCCccceEEEec
Q 045261 71 -VQWGLHRLTSLRWLLI--ERCDESEC-----FPDGMMGMTLPTSLVHLNIVE 115 (227)
Q Consensus 71 -~~~~~~~l~~L~~L~l--~~~~~l~~-----l~~~~~~~~~~~~L~~L~l~~ 115 (227)
....+...++|++|++ +++ .+.. +...+. ..++|++|++++
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~---~n~~L~~L~L~~ 160 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLE---KNTTLLKFGYHF 160 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHH---HCSSCCEEECCC
T ss_pred HHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHH---hCCCcCEEeccC
Confidence 1234566677888888 554 3332 111111 235566666655
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0014 Score=51.05 Aligned_cols=43 Identities=26% Similarity=0.281 Sum_probs=20.1
Q ss_pred CCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccC
Q 045261 105 PTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSL 149 (227)
Q Consensus 105 ~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~ 149 (227)
+++|++|++++ +.+..++.-...+..+++|+.|++++ +.+..+
T Consensus 169 l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~ 211 (267)
T 3rw6_A 169 IPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSG-NELKSE 211 (267)
T ss_dssp CTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSG
T ss_pred CCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCC-CccCCc
Confidence 45566666655 34433320002334556666666655 344433
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.023 Score=46.40 Aligned_cols=107 Identities=15% Similarity=0.134 Sum_probs=80.6
Q ss_pred cccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCc
Q 045261 23 SDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMM 100 (227)
Q Consensus 23 ~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~ 100 (227)
..+.++.+|+.+.+.. .+..++.. ..+.+|+.+.+ .. .+. .+....|..+.+|+.+.+.. .++.+.....
T Consensus 259 ~aF~~c~~L~~i~lp~--~~~~I~~~aF~~c~~L~~i~l-~~--~i~-~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF 330 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPD--SVVSIGTGAFMNCPALQDIEF-SS--RIT-ELPESVFAGCISLKSIDIPE--GITQILDDAF 330 (394)
T ss_dssp TTTTTCSSCCEEECCT--TCCEECTTTTTTCTTCCEEEC-CT--TCC-EECTTTTTTCTTCCEEECCT--TCCEECTTTT
T ss_pred ceeeecccccEEeccc--ccceecCcccccccccccccC-CC--ccc-ccCceeecCCCCcCEEEeCC--cccEehHhHh
Confidence 3567888999999865 35556655 67889999998 43 343 45566788999999999975 4777765443
Q ss_pred CCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCC
Q 045261 101 GMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDC 143 (227)
Q Consensus 101 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c 143 (227)
..+.+|+++.+.+ .+..+. ...+.++++|+.+++.+.
T Consensus 331 --~~C~~L~~i~ip~--sv~~I~--~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 331 --AGCEQLERIAIPS--SVTKIP--ESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp --TTCTTCCEEEECT--TCCBCC--GGGGTTCTTCCEEEESSC
T ss_pred --hCCCCCCEEEECc--ccCEEh--HhHhhCCCCCCEEEECCc
Confidence 2678999999964 577776 578899999999999874
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.062 Score=43.85 Aligned_cols=142 Identities=13% Similarity=0.107 Sum_probs=95.1
Q ss_pred CCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 4 PESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
..+|+.+.+... +..+. ..+.++.+|+.+.+... ...++.. ..+.+++.+.. .. .. +....+..+.+
T Consensus 229 ~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~-~~-~~----i~~~~F~~~~~ 298 (394)
T 4fs7_A 229 KTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIY-GS-VI----VPEKTFYGCSS 298 (394)
T ss_dssp TCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEE-CS-SE----ECTTTTTTCTT
T ss_pred cCCCceEEECCC--ceecccccccccccceeEEcCCC--cceeeccccccccccceecc-Cc-ee----ecccccccccc
Confidence 346777777642 33333 35678889999998753 4455544 66778888877 33 22 23445778889
Q ss_pred cceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCC--CCcc
Q 045261 81 LRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGL--PSSL 158 (227)
Q Consensus 81 L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L 158 (227)
|+.+.+.. .++.++.... ..+.+|+.+++.+ .+..+. ...+.++.+|+.+.+... +..++...+ ..+|
T Consensus 299 L~~i~l~~--~i~~I~~~aF--~~c~~L~~i~lp~--~v~~I~--~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 299 LTEVKLLD--SVKFIGEEAF--ESCTSLVSIDLPY--LVEEIG--KRSFRGCTSLSNINFPLS--LRKIGANAFQGCINL 368 (394)
T ss_dssp CCEEEECT--TCCEECTTTT--TTCTTCCEECCCT--TCCEEC--TTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTC
T ss_pred cccccccc--ccceechhhh--cCCCCCCEEEeCC--cccEEh--HHhccCCCCCCEEEECcc--ccEehHHHhhCCCCC
Confidence 99998875 4666665433 2678899998864 577776 578889999999998652 667766533 3567
Q ss_pred ceeeecC
Q 045261 159 LDLCIFN 165 (227)
Q Consensus 159 ~~l~i~~ 165 (227)
+.+++..
T Consensus 369 ~~i~lp~ 375 (394)
T 4fs7_A 369 KKVELPK 375 (394)
T ss_dssp CEEEEEG
T ss_pred CEEEECC
Confidence 7777653
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.037 Score=37.88 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=38.9
Q ss_pred eEEeccCCCCC--ccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCC
Q 045261 83 WLLIERCDESE--CFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCP 144 (227)
Q Consensus 83 ~L~l~~~~~l~--~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~ 144 (227)
.++-++. .++ .+|..+ +++|+.|++++ +.+..++ ...+..+++|++|++.+++
T Consensus 12 ~v~Cs~~-~L~~~~vP~~l-----p~~l~~L~Ls~-N~l~~l~--~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTAF-----PVDTTELVLTG-NNLTALP--PGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSS-CCCTTTSCSCC-----CTTCSEEECTT-SCCSSCC--TTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCC-CCccccCCCCC-----CcCCCEEECCC-CcCCccC--hhhhhhccccCEEEecCCC
Confidence 4444443 566 777643 56899999988 7888888 5667888999999998854
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=92.20 E-value=0.18 Score=34.38 Aligned_cols=49 Identities=16% Similarity=0.248 Sum_probs=31.5
Q ss_pred EEEeccCCCCC--cCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccC
Q 045261 9 SVEIRRCEKLG--ALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGED 62 (227)
Q Consensus 9 ~L~l~~~~~l~--~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~ 62 (227)
.++-++ ..++ .+|..+ -++|++|+++++ .+..++.. ..+++|+.|+| .+
T Consensus 12 ~v~Cs~-~~L~~~~vP~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L-~~ 64 (130)
T 3rfe_A 12 LVDCGR-RGLTWASLPTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHL-GA 64 (130)
T ss_dssp EEECCS-SCCCTTTSCSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEEC-CS
T ss_pred EEEeCC-CCCccccCCCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEe-cC
Confidence 344555 3455 666432 235888888875 57777765 56778888888 54
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 227 | ||||
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 0.003 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 35.7 bits (81), Expect = 0.003
Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 18/167 (10%)
Query: 22 PSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81
+ L +L DLD+ I + T LT L +G + + L L
Sbjct: 234 IGTLASLTNLTDLDLANN-QISNLAPLSGLTKLTELKLGANQ--------ISNISPLAGL 284
Query: 82 RWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQ 141
L +E++ + + + L N S S SLT L+RL
Sbjct: 285 TALTNLELNENQLEDISPISNLKNLTYLTLY-------FNNISDISPVSSLTKLQRLFFA 337
Query: 142 DCPNLTSLPKVGLPSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFD 188
+ ++ + + +++ L + ++ L + + + +L + D
Sbjct: 338 NN-KVSDVSSLANLTNINWLSAGHN-QISDLTPLANLTRITQLGLND 382
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 227 | |||
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.65 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.6 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.57 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.57 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.56 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.52 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.5 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.5 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.49 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.49 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.49 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.46 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.46 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.45 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.41 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.39 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.37 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.36 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.29 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.25 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.24 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.17 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.13 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.09 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.02 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.01 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.9 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.84 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 98.82 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.67 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.65 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.64 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 97.06 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 96.96 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 96.68 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 96.47 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 96.07 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 95.97 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 94.27 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 94.17 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 92.05 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 88.81 |
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=4.2e-15 Score=114.97 Aligned_cols=174 Identities=20% Similarity=0.210 Sum_probs=137.6
Q ss_pred CCCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCcc
Q 045261 3 LPESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L 81 (227)
+.++++.|+|+++ .++.+| ..+.++++|++|+++++ .+..++....+++|+.|++ ++ +++. .. +..+..+++|
T Consensus 29 lp~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~~~~l~~L~~L~L-s~-N~l~-~~-~~~~~~l~~L 102 (266)
T d1p9ag_ 29 LPKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVDGTLPVLGTLDL-SH-NQLQ-SL-PLLGQTLPAL 102 (266)
T ss_dssp CCTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTS-CCCEEECCSCCTTCCEEEC-CS-SCCS-SC-CCCTTTCTTC
T ss_pred cCcCCCEEECcCC-cCCCcCHHHhhccccccccccccc-ccccccccccccccccccc-cc-cccc-cc-cccccccccc
Confidence 5578999999995 577776 56899999999999997 5788877778999999999 77 4554 22 3357889999
Q ss_pred ceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCccc
Q 045261 82 RWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLL 159 (227)
Q Consensus 82 ~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~ 159 (227)
++|+++++ ....++.... ..+.+++.|++.+ +.+..++ ...+..+++|+.+++++ +.+..++.. ...++|+
T Consensus 103 ~~L~l~~~-~~~~~~~~~~--~~l~~l~~L~l~~-n~l~~l~--~~~~~~l~~l~~l~l~~-N~l~~~~~~~~~~l~~L~ 175 (266)
T d1p9ag_ 103 TVLDVSFN-RLTSLPLGAL--RGLGELQELYLKG-NELKTLP--PGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLENLD 175 (266)
T ss_dssp CEEECCSS-CCCCCCSSTT--TTCTTCCEEECTT-SCCCCCC--TTTTTTCTTCCEEECTT-SCCSCCCTTTTTTCTTCC
T ss_pred cccccccc-ccceeecccc--ccccccccccccc-cccceec--cccccccccchhccccc-ccccccCccccccccccc
Confidence 99999987 4545544332 2678999999998 6777877 56777899999999999 578888764 4468999
Q ss_pred eeeecCCCCCCCCCCC-CCCCCCcEEeecCCc
Q 045261 160 DLCIFNCPNLTSLPKV-GLPSSLLELTIFDCP 190 (227)
Q Consensus 160 ~l~i~~c~~l~~~~~~-~~~~~L~~L~l~~c~ 190 (227)
+|+++++. ++.+|.. ...++|+.|++++.|
T Consensus 176 ~L~Ls~N~-L~~lp~~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 176 TLLLQENS-LYTIPKGFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp EEECCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred eeecccCC-CcccChhHCCCCCCCEEEecCCC
Confidence 99999865 7788875 337899999999754
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=3.7e-17 Score=128.03 Aligned_cols=180 Identities=16% Similarity=0.160 Sum_probs=127.7
Q ss_pred CCCccEEEeccCCCCCc-CCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCcc
Q 045261 4 PESISSVEIRRCEKLGA-LPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~-lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L 81 (227)
..+|++|++++|....+ +...+.++++|++|++.+|..-...... ..+++|+.|++ ++|..+++......+..+++|
T Consensus 45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L-s~c~~itd~~l~~l~~~~~~L 123 (284)
T d2astb2 45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL-SGCSGFSEFALQTLLSSCSRL 123 (284)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC-TTCBSCCHHHHHHHHHHCTTC
T ss_pred CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccc-cccccccccccchhhHHHHhc
Confidence 45799999999753322 3455688999999999998532222222 56789999999 999988744434345678999
Q ss_pred ceEEeccCCCCCcc--CccCcCCCCCCccceEEEecCC-Cccc--cCCCCCCccCCCCccEEeecCCCCCccC--CCCCC
Q 045261 82 RWLLIERCDESECF--PDGMMGMTLPTSLVHLNIVEFQ-KLKN--LSSSSSGFHSLTSLRRLLIQDCPNLTSL--PKVGL 154 (227)
Q Consensus 82 ~~L~l~~~~~l~~l--~~~~~~~~~~~~L~~L~l~~~~-~l~~--l~~~~~~l~~l~~L~~L~l~~c~~l~~~--~~~~~ 154 (227)
++|++++|..+.+- ..... ...++|+.|++++|. .+.. +. ..+.++++|++|++++|..+++- .....
T Consensus 124 ~~L~ls~c~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~i~~~~l~---~l~~~~~~L~~L~L~~~~~itd~~~~~l~~ 198 (284)
T d2astb2 124 DELNLSWCFDFTEKHVQVAVA--HVSETITQLNLSGYRKNLQKSDLS---TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ 198 (284)
T ss_dssp CEEECCCCTTCCHHHHHHHHH--HSCTTCCEEECCSCGGGSCHHHHH---HHHHHCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred cccccccccccccccchhhhc--ccccccchhhhccccccccccccc---ccccccccccccccccccCCCchhhhhhcc
Confidence 99999998776542 11111 146789999998863 3332 32 33457899999999999887643 22245
Q ss_pred CCccceeeecCCCCCCCCCC--CCCCCCCcEEeecCC
Q 045261 155 PSSLLDLCIFNCPNLTSLPK--VGLPSSLLELTIFDC 189 (227)
Q Consensus 155 ~~~L~~l~i~~c~~l~~~~~--~~~~~~L~~L~l~~c 189 (227)
.++|++|++++|..+++-.. .+.+++|+.|++++|
T Consensus 199 ~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 199 LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred cCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 67999999999998865432 234789999999997
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.57 E-value=1.7e-14 Score=107.74 Aligned_cols=164 Identities=16% Similarity=0.204 Sum_probs=106.6
Q ss_pred CCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceE
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWL 84 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L 84 (227)
.+|++|++++| .++.++ ++.++++|++|+++++. +..++....+++|+.|++ +++ +++ .++ .+..+++|+.|
T Consensus 46 ~~L~~L~l~~~-~i~~l~-~l~~l~~L~~L~L~~n~-i~~l~~~~~l~~L~~L~l-~~n-~i~-~l~--~l~~l~~L~~L 117 (210)
T d1h6ta2 46 NSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKPLANLKNLGWLFL-DEN-KVK-DLS--SLKDLKKLKSL 117 (210)
T ss_dssp HTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEEC-CSS-CCC-CGG--GGTTCTTCCEE
T ss_pred cCccEEECcCC-CCCCch-hHhhCCCCCEEeCCCcc-ccCccccccCcccccccc-ccc-ccc-ccc--ccccccccccc
Confidence 46777777775 455554 36777888888887763 555655567778888888 663 444 222 36677778888
Q ss_pred EeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeeec
Q 045261 85 LIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIF 164 (227)
Q Consensus 85 ~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i~ 164 (227)
++.++ ....++... .+++++.+++++ +.+... ..+..+++|++++++++ .+..++....+++|++|+++
T Consensus 118 ~l~~~-~~~~~~~l~----~l~~l~~l~~~~-n~l~~~----~~~~~l~~L~~l~l~~n-~l~~i~~l~~l~~L~~L~Ls 186 (210)
T d1h6ta2 118 SLEHN-GISDINGLV----HLPQLESLYLGN-NKITDI----TVLSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLS 186 (210)
T ss_dssp ECTTS-CCCCCGGGG----GCTTCCEEECCS-SCCCCC----GGGGGCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECC
T ss_pred ccccc-ccccccccc----cccccccccccc-cccccc----ccccccccccccccccc-cccccccccCCCCCCEEECC
Confidence 87776 444444322 567777777766 344443 34566778888888774 56666544456777888887
Q ss_pred CCCCCCCCCCCCCCCCCcEEeecC
Q 045261 165 NCPNLTSLPKVGLPSSLLELTIFD 188 (227)
Q Consensus 165 ~c~~l~~~~~~~~~~~L~~L~l~~ 188 (227)
++ .+++++....+++|++|++++
T Consensus 187 ~N-~i~~l~~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 187 KN-HISDLRALAGLKNLDVLELFS 209 (210)
T ss_dssp SS-CCCBCGGGTTCTTCSEEEEEE
T ss_pred CC-CCCCChhhcCCCCCCEEEccC
Confidence 76 466666555567788877763
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.57 E-value=2.3e-14 Score=106.05 Aligned_cols=144 Identities=21% Similarity=0.242 Sum_probs=63.0
Q ss_pred CCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCc
Q 045261 28 LNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTS 107 (227)
Q Consensus 28 l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 107 (227)
++++++|+++++. +..+.....+++|++|++ +++ .++ ... .++.+++|++|++.++ .+..++. +. .+++
T Consensus 39 l~~l~~L~l~~~~-i~~l~~l~~l~nL~~L~L-s~N-~l~-~~~--~l~~l~~L~~L~l~~n-~~~~~~~-l~---~l~~ 107 (199)
T d2omxa2 39 LDQVTTLQADRLG-IKSIDGVEYLNNLTQINF-SNN-QLT-DIT--PLKNLTKLVDILMNNN-QIADITP-LA---NLTN 107 (199)
T ss_dssp HTTCCEEECTTSC-CCCCTTGGGCTTCCEEEC-CSS-CCC-CCG--GGTTCTTCCEEECCSS-CCCCCGG-GT---TCTT
T ss_pred hcCCCEEECCCCC-CCCccccccCCCcCcCcc-ccc-ccc-Ccc--cccCCccccccccccc-ccccccc-cc---cccc
Confidence 4445555555442 333433344455555555 442 333 111 2445555555555544 3333332 11 3455
Q ss_pred cceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeeecCCCCCCCCCCCCCCCCCcEEeec
Q 045261 108 LVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIF 187 (227)
Q Consensus 108 L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i~~c~~l~~~~~~~~~~~L~~L~l~ 187 (227)
|+.|+++++.. ..+ ..+..+++|+.|+++++ .+..++.....++++.|++.++ .+++++..+.+++|++|+++
T Consensus 108 L~~L~l~~~~~-~~~----~~~~~l~~L~~L~l~~n-~l~~~~~l~~~~~L~~L~l~~n-~l~~l~~l~~l~~L~~L~ls 180 (199)
T d2omxa2 108 LTGLTLFNNQI-TDI----DPLKNLTNLNRLELSSN-TISDISALSGLTSLQQLNFSSN-QVTDLKPLANLTTLERLDIS 180 (199)
T ss_dssp CSEEECCSSCC-CCC----GGGTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECC
T ss_pred ccccccccccc-ccc----cccchhhhhHHhhhhhh-hhcccccccccccccccccccc-cccCCccccCCCCCCEEECC
Confidence 55555544322 222 22444555555555542 3343333233445555555543 23344333344555555555
Q ss_pred CC
Q 045261 188 DC 189 (227)
Q Consensus 188 ~c 189 (227)
+|
T Consensus 181 ~N 182 (199)
T d2omxa2 181 SN 182 (199)
T ss_dssp SS
T ss_pred CC
Confidence 54
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1.7e-13 Score=106.74 Aligned_cols=177 Identities=18% Similarity=0.240 Sum_probs=120.3
Q ss_pred CCCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 3 LPESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
+++++++|+|+++ .++.+| .++.++++|++|+++++. +..++.. ..+..++.+.+ .....+. .+.+..+..++
T Consensus 30 ip~~~~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~ls~n~-l~~i~~~~~~~~~~~~~l~~-~~~~~~~-~l~~~~~~~l~ 105 (284)
T d1ozna_ 30 IPAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDL-SDNAQLR-SVDPATFHGLG 105 (284)
T ss_dssp CCTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEEC-CSCTTCC-CCCTTTTTTCT
T ss_pred CCCCCCEEECcCC-cCCCCCHHHhhcccccccccccccc-cccccccccccccccccccc-ccccccc-cccchhhcccc
Confidence 5678999999995 577877 468999999999998864 6655554 55677777777 6666665 45555678888
Q ss_pred ccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCc
Q 045261 80 SLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSS 157 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~ 157 (227)
+|++|++.++ .+..++.... ...++|+.+++.+ +.++.++ ...+..+++|++|+++++ .+..++.. ...++
T Consensus 106 ~L~~L~l~~n-~~~~~~~~~~--~~~~~L~~l~l~~-N~l~~i~--~~~f~~~~~L~~L~l~~N-~l~~l~~~~f~~l~~ 178 (284)
T d1ozna_ 106 RLHTLHLDRC-GLQELGPGLF--RGLAALQYLYLQD-NALQALP--DDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHS 178 (284)
T ss_dssp TCCEEECTTS-CCCCCCTTTT--TTCTTCCEEECCS-SCCCCCC--TTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTT
T ss_pred cCCEEecCCc-cccccccccc--chhcccchhhhcc-ccccccC--hhHhccccchhhcccccC-cccccchhhhccccc
Confidence 8888888876 4444443322 1567788888877 5677765 456777778888888874 56666553 23567
Q ss_pred cceeeecCCCCCCCCCC-CCCCCCCcEEeecCCc
Q 045261 158 LLDLCIFNCPNLTSLPK-VGLPSSLLELTIFDCP 190 (227)
Q Consensus 158 L~~l~i~~c~~l~~~~~-~~~~~~L~~L~l~~c~ 190 (227)
|+.+.++++....-.+. ...+++|++|+++++.
T Consensus 179 L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 212 (284)
T d1ozna_ 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212 (284)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cchhhhhhccccccChhHhhhhhhcccccccccc
Confidence 77777776554332222 1335677777777654
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=9.1e-13 Score=101.59 Aligned_cols=189 Identities=23% Similarity=0.228 Sum_probs=139.0
Q ss_pred CccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 6 SISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 6 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
.+..++.++ .+++++|..+. +++++|+++++ .+..++.. ..+++|++|++ +++ +++ .+. .++.+++|++
T Consensus 11 ~~~~v~C~~-~~L~~iP~~lp--~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~L-~~N-~l~-~l~--~~~~l~~L~~ 81 (266)
T d1p9ag_ 11 SHLEVNCDK-RNLTALPPDLP--KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNL-DRA-ELT-KLQ--VDGTLPVLGT 81 (266)
T ss_dssp TCCEEECTT-SCCSSCCSCCC--TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEEC-TTS-CCC-EEE--CCSCCTTCCE
T ss_pred CCeEEEccC-CCCCeeCcCcC--cCCCEEECcCC-cCCCcCHHHhhcccccccccc-ccc-ccc-ccc--cccccccccc
Confidence 344566666 46788887653 57999999986 57777754 78999999999 774 565 333 3578999999
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCcccee
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLLDL 161 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l 161 (227)
|+++++ .+...+..+. .+++|+.|+++++ .+..++ ...+..+.++++|++.+ +.+..++.. ...+.++.+
T Consensus 82 L~Ls~N-~l~~~~~~~~---~l~~L~~L~l~~~-~~~~~~--~~~~~~l~~l~~L~l~~-n~l~~l~~~~~~~l~~l~~l 153 (266)
T d1p9ag_ 82 LDLSHN-QLQSLPLLGQ---TLPALTVLDVSFN-RLTSLP--LGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKL 153 (266)
T ss_dssp EECCSS-CCSSCCCCTT---TCTTCCEEECCSS-CCCCCC--SSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEE
T ss_pred cccccc-cccccccccc---ccccccccccccc-ccceee--ccccccccccccccccc-cccceeccccccccccchhc
Confidence 999997 6777777664 7899999999984 555555 46778899999999998 577787764 345789999
Q ss_pred eecCCCCCCCCCCC--CCCCCCcEEeecCCchhhhhhcccCCCCcccccccceEEeccC
Q 045261 162 CIFNCPNLTSLPKV--GLPSSLLELTIFDCPKLRKECKRDKGKGWSKIANIPMFLIDDT 218 (227)
Q Consensus 162 ~i~~c~~l~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 218 (227)
+++++ .++.++.. ..+++|++|+++++. ++. .+.++..+.++..+.+.+.
T Consensus 154 ~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-L~~-----lp~~~~~~~~L~~L~L~~N 205 (266)
T d1p9ag_ 154 SLANN-NLTELPAGLLNGLENLDTLLLQENS-LYT-----IPKGFFGSHLLPFAFLHGN 205 (266)
T ss_dssp ECTTS-CCSCCCTTTTTTCTTCCEEECCSSC-CCC-----CCTTTTTTCCCSEEECCSC
T ss_pred ccccc-cccccCccccccccccceeecccCC-Ccc-----cChhHCCCCCCCEEEecCC
Confidence 99986 56666653 347999999999875 432 1223334566777777664
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.50 E-value=2.1e-13 Score=102.74 Aligned_cols=169 Identities=17% Similarity=0.197 Sum_probs=119.3
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+.+|+.|++.+| .+++++ +++++++|++|+++++. +..+.+...+++++.+.+ .++ .++ .+ ..+..+++|+.
T Consensus 40 l~~L~~L~l~~~-~i~~l~-~l~~l~~L~~L~ls~n~-i~~~~~l~~l~~l~~l~~-~~n-~~~-~i--~~l~~l~~L~~ 111 (227)
T d1h6ua2 40 LDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDNQ-ITDLAPLKNLTKITELEL-SGN-PLK-NV--SAIAGLQSIKT 111 (227)
T ss_dssp HHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCCSCCEEEC-CSC-CCS-CC--GGGTTCTTCCE
T ss_pred cCCcCEEECCCC-CCCcch-hHhcCCCCcEeecCCce-eecccccccccccccccc-ccc-ccc-cc--ccccccccccc
Confidence 357899999996 577774 68999999999999974 666655578899999999 664 343 22 24778999999
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeee
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCI 163 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i 163 (227)
+++.++ ....++... ..+.+..+.+.++. +... ..+...++|++|+++++ .+...+....+++|+.|++
T Consensus 112 l~l~~~-~~~~~~~~~----~~~~~~~l~~~~~~-~~~~----~~~~~~~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~L 180 (227)
T d1h6ua2 112 LDLTST-QITDVTPLA----GLSNLQVLYLDLNQ-ITNI----SPLAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKA 180 (227)
T ss_dssp EECTTS-CCCCCGGGT----TCTTCCEEECCSSC-CCCC----GGGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEEC
T ss_pred cccccc-cccccchhc----cccchhhhhchhhh-hchh----hhhcccccccccccccc-ccccchhhcccccceeccc
Confidence 999887 333343322 45677788776643 3332 34567788888888774 4444444345678888888
Q ss_pred cCCCCCCCCCCCCCCCCCcEEeecCCchhh
Q 045261 164 FNCPNLTSLPKVGLPSSLLELTIFDCPKLR 193 (227)
Q Consensus 164 ~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~ 193 (227)
+++ .+++++....+++|++|++++| +++
T Consensus 181 s~n-~l~~l~~l~~l~~L~~L~Ls~N-~lt 208 (227)
T d1h6ua2 181 DDN-KISDISPLASLPNLIEVHLKNN-QIS 208 (227)
T ss_dssp CSS-CCCCCGGGGGCTTCCEEECTTS-CCC
T ss_pred CCC-ccCCChhhcCCCCCCEEECcCC-cCC
Confidence 876 5677766555788888888887 354
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.50 E-value=2.7e-12 Score=100.63 Aligned_cols=200 Identities=17% Similarity=0.191 Sum_probs=130.3
Q ss_pred CCCCccEEEeccCCCCCcCCc-ccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccch--------
Q 045261 3 LPESISSVEIRRCEKLGALPS-DMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLV-------- 71 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~-------- 71 (227)
+++++++|++++| .++++|+ ++.++++|++|+++++. +..+++. ..+++|+.|++ .++. ++ .++
T Consensus 29 l~~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~~n~-~~~i~~~~f~~l~~L~~L~l-~~n~-l~-~l~~~~~~~l~ 103 (305)
T d1xkua_ 29 LPPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYL-SKNQ-LK-ELPEKMPKTLQ 103 (305)
T ss_dssp CCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEEC-CSSC-CS-BCCSSCCTTCC
T ss_pred CCCCCCEEECcCC-cCCCcChhHhhcccccccccccccc-ccccchhhhhCCCccCEecc-cCCc-cC-cCccchhhhhh
Confidence 5678999999996 5778875 67889999999998876 4445433 66788888887 5532 21 000
Q ss_pred ---------------------------------------hcccccCCccceEEeccCCCCCccCccCcCCCCCCccceEE
Q 045261 72 ---------------------------------------QWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLN 112 (227)
Q Consensus 72 ---------------------------------------~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~ 112 (227)
...+..+++|+++++.++ .+..++.. .+++|+.|+
T Consensus 104 ~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n-~l~~l~~~-----~~~~L~~L~ 177 (305)
T d1xkua_ 104 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQG-----LPPSLTELH 177 (305)
T ss_dssp EEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSS-----CCTTCSEEE
T ss_pred hhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccC-CccccCcc-----cCCccCEEE
Confidence 011234556666666665 45555543 357788888
Q ss_pred EecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCccceeeecCCCCCCCCCCC-CCCCCCcEEeecCC
Q 045261 113 IVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLLDLCIFNCPNLTSLPKV-GLPSSLLELTIFDC 189 (227)
Q Consensus 113 l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l~i~~c~~l~~~~~~-~~~~~L~~L~l~~c 189 (227)
+.++......+ ..+.+++.++.|+++++ .+..++.. ...++|++|+++++ .++.+|.. ..+++|++|+++++
T Consensus 178 l~~n~~~~~~~---~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N 252 (305)
T d1xkua_ 178 LDGNKITKVDA---ASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN 252 (305)
T ss_dssp CTTSCCCEECT---GGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS
T ss_pred CCCCcCCCCCh---hHhhccccccccccccc-cccccccccccccccceeeecccc-cccccccccccccCCCEEECCCC
Confidence 88755555454 67778888899988884 66666553 33578999999987 57777653 44789999999986
Q ss_pred chhhhhhcccC--CCCcccccccceEEeccCC
Q 045261 190 PKLRKECKRDK--GKGWSKIANIPMFLIDDTD 219 (227)
Q Consensus 190 ~~l~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 219 (227)
. ++..-.... ........++..+.+++..
T Consensus 253 ~-i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~ 283 (305)
T d1xkua_ 253 N-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP 283 (305)
T ss_dssp C-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred c-cCccChhhccCcchhcccCCCCEEECCCCc
Confidence 3 553211110 1122345567777777664
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.49 E-value=2.5e-13 Score=102.33 Aligned_cols=165 Identities=15% Similarity=0.238 Sum_probs=113.0
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLR 82 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~ 82 (227)
-+++|+.|++++|. +..++ .+..+++|++++++++. ++.++....+++|+.+.+ .++.... ...+...+.++
T Consensus 61 ~l~~L~~L~ls~n~-i~~~~-~l~~l~~l~~l~~~~n~-~~~i~~l~~l~~L~~l~l-~~~~~~~----~~~~~~~~~~~ 132 (227)
T d1h6ua2 61 YLNNLIGLELKDNQ-ITDLA-PLKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDL-TSTQITD----VTPLAGLSNLQ 132 (227)
T ss_dssp GCTTCCEEECCSSC-CCCCG-GGTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEEC-TTSCCCC----CGGGTTCTTCC
T ss_pred cCCCCcEeecCCce-eeccc-ccccccccccccccccc-cccccccccccccccccc-ccccccc----cchhccccchh
Confidence 36788888888864 45444 37888888888888764 555554467788888888 6654332 12355667778
Q ss_pred eEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceee
Q 045261 83 WLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLC 162 (227)
Q Consensus 83 ~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~ 162 (227)
.+.+.++ .+....... .+++|+.|++.++ .+...+ .++++++|++|+++++ .+..++.-..+++|++|+
T Consensus 133 ~l~~~~~-~~~~~~~~~----~~~~L~~L~l~~n-~~~~~~----~l~~l~~L~~L~Ls~n-~l~~l~~l~~l~~L~~L~ 201 (227)
T d1h6ua2 133 VLYLDLN-QITNISPLA----GLTNLQYLSIGNA-QVSDLT----PLANLSKLTTLKADDN-KISDISPLASLPNLIEVH 201 (227)
T ss_dssp EEECCSS-CCCCCGGGG----GCTTCCEEECCSS-CCCCCG----GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEE
T ss_pred hhhchhh-hhchhhhhc----ccccccccccccc-ccccch----hhcccccceecccCCC-ccCCChhhcCCCCCCEEE
Confidence 8887765 343333222 5678888888774 444443 4678888888888885 677776545567888888
Q ss_pred ecCCCCCCCCCCCCCCCCCcEEeec
Q 045261 163 IFNCPNLTSLPKVGLPSSLLELTIF 187 (227)
Q Consensus 163 i~~c~~l~~~~~~~~~~~L~~L~l~ 187 (227)
+++| .+++++....+++|++|+++
T Consensus 202 Ls~N-~lt~i~~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 202 LKNN-QISDVSPLANTSNLFIVTLT 225 (227)
T ss_dssp CTTS-CCCBCGGGTTCTTCCEEEEE
T ss_pred CcCC-cCCCCcccccCCCCCEEEee
Confidence 8887 57777765667888888876
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=3e-16 Score=122.73 Aligned_cols=158 Identities=16% Similarity=0.190 Sum_probs=115.7
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCC--C-CCCCCcceeEeccCcccccccchhccccc-C
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPE--E-GFPTNLTSLAIGEDMKMLYKGLVQWGLHR-L 78 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~--~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~-l 78 (227)
-+++|++|++++|..-...+..+..+++|++|++++|..+++... . ..+++|++|++ ++|..+++......+.. .
T Consensus 69 ~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~l-s~c~~~~~~~~~~~~~~~~ 147 (284)
T d2astb2 69 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL-SWCFDFTEKHVQVAVAHVS 147 (284)
T ss_dssp TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEEC-CCCTTCCHHHHHHHHHHSC
T ss_pred hCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccccc-ccccccccccchhhhcccc
Confidence 468999999999864334556778899999999999987764321 1 46899999999 99988864433333333 5
Q ss_pred CccceEEeccCC-CCCc--cCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCC--CC
Q 045261 79 TSLRWLLIERCD-ESEC--FPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPK--VG 153 (227)
Q Consensus 79 ~~L~~L~l~~~~-~l~~--l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~--~~ 153 (227)
++|+.|++.+|. .+.+ +..... .+++|++|++++|..+++-. ...+.++++|++|++++|+.+.+-.. -.
T Consensus 148 ~~L~~L~l~~~~~~i~~~~l~~l~~---~~~~L~~L~L~~~~~itd~~--~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~ 222 (284)
T d2astb2 148 ETITQLNLSGYRKNLQKSDLSTLVR---RCPNLVHLDLSDSVMLKNDC--FQEFFQLNYLQHLSLSRCYDIIPETLLELG 222 (284)
T ss_dssp TTCCEEECCSCGGGSCHHHHHHHHH---HCTTCSEEECTTCTTCCGGG--GGGGGGCTTCCEEECTTCTTCCGGGGGGGG
T ss_pred cccchhhhccccccccccccccccc---ccccccccccccccCCCchh--hhhhcccCcCCEEECCCCCCCChHHHHHHh
Confidence 789999999863 2322 221111 57899999999998887532 26778899999999999988765322 23
Q ss_pred CCCccceeeecCC
Q 045261 154 LPSSLLDLCIFNC 166 (227)
Q Consensus 154 ~~~~L~~l~i~~c 166 (227)
..++|+.|++++|
T Consensus 223 ~~~~L~~L~l~~~ 235 (284)
T d2astb2 223 EIPTLKTLQVFGI 235 (284)
T ss_dssp GCTTCCEEECTTS
T ss_pred cCCCCCEEeeeCC
Confidence 4678999999987
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.7e-12 Score=98.43 Aligned_cols=178 Identities=17% Similarity=0.222 Sum_probs=127.1
Q ss_pred CCCCCccEEEeccCCCCCcCCc-ccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccC
Q 045261 2 RLPESISSVEIRRCEKLGALPS-DMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRL 78 (227)
Q Consensus 2 ~~~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l 78 (227)
.+++++++|+++++ .++.+|. .+.++++|++|+++++.....++.. ..+++++++.+ ..++.+. ...+..+..+
T Consensus 26 ~l~~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~-~~~n~l~-~~~~~~~~~l 102 (242)
T d1xwdc1 26 DLPRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI-EKANNLL-YINPEAFQNL 102 (242)
T ss_dssp CSCSCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE-ECCTTCC-EECTTSEECC
T ss_pred CCCCCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeeccccccccccccccc-ccccccc-cccccccccc
Confidence 35678999999995 5778775 5789999999999998765555554 56789999988 7877776 5556668899
Q ss_pred CccceEEeccCCCCCccCccCcCCCCCCccceEEE--ecCCCccccCCCCCCccCCC-CccEEeecCCCCCccCCCCC-C
Q 045261 79 TSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNI--VEFQKLKNLSSSSSGFHSLT-SLRRLLIQDCPNLTSLPKVG-L 154 (227)
Q Consensus 79 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l--~~~~~l~~l~~~~~~l~~l~-~L~~L~l~~c~~l~~~~~~~-~ 154 (227)
++|+++++.++ .+...+... .+.+++.+.. .++..+..++ ...+..++ .++.+++.+ +.+..++... .
T Consensus 103 ~~L~~l~l~~~-~l~~~~~~~----~~~~l~~l~~~~~~n~~l~~i~--~~~~~~~~~~l~~L~l~~-n~l~~i~~~~~~ 174 (242)
T d1xwdc1 103 PNLQYLLISNT-GIKHLPDVH----KIHSLQKVLLDIQDNINIHTIE--RNSFVGLSFESVILWLNK-NGIQEIHNCAFN 174 (242)
T ss_dssp TTCCEEEEESC-CCCSCCCCT----TTCBSSCEEEEEESCTTCCEEC--TTSSTTSBSSCEEEECCS-SCCCEECTTTTT
T ss_pred ccccccccchh-hhccccccc----cccccccccccccccccccccc--ccccccccccceeeeccc-cccccccccccc
Confidence 99999999987 566665433 3444444432 2335666665 35555554 678888877 6677776642 2
Q ss_pred CCccceeeecCCCCCCCCCCCC--CCCCCcEEeecCCc
Q 045261 155 PSSLLDLCIFNCPNLTSLPKVG--LPSSLLELTIFDCP 190 (227)
Q Consensus 155 ~~~L~~l~i~~c~~l~~~~~~~--~~~~L~~L~l~~c~ 190 (227)
...++++....+..++.++... .+++|++|+++++.
T Consensus 175 ~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~ 212 (242)
T d1xwdc1 175 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 212 (242)
T ss_dssp TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC
T ss_pred chhhhccccccccccccccHHHhcCCCCCCEEECCCCc
Confidence 4556667666777888887643 47899999998764
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.46 E-value=1.3e-13 Score=108.84 Aligned_cols=86 Identities=17% Similarity=0.077 Sum_probs=50.1
Q ss_pred CCccCCCCccEEeecCCCCCccCCCCCCCCccceeeecCCCCCCCCCCC-CCCCCCcEEeecCCchhhhhhcccCCCCcc
Q 045261 127 SGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIFNCPNLTSLPKV-GLPSSLLELTIFDCPKLRKECKRDKGKGWS 205 (227)
Q Consensus 127 ~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 205 (227)
..+..+++++.+++.++.....++.....++++.|+++++...+.+|.. +.+++|++|+++++. ++ .. -+++.
T Consensus 215 ~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~-l~----g~-iP~~~ 288 (313)
T d1ogqa_ 215 VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN-LC----GE-IPQGG 288 (313)
T ss_dssp GGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE-EE----EE-CCCST
T ss_pred ccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCc-cc----cc-CCCcc
Confidence 3444556677777766543333444345677888888877655567653 456888888888763 21 11 11234
Q ss_pred cccccceEEeccC
Q 045261 206 KIANIPMFLIDDT 218 (227)
Q Consensus 206 ~~~~l~~~~~~~~ 218 (227)
.+.++..+.+.+.
T Consensus 289 ~L~~L~~l~l~~N 301 (313)
T d1ogqa_ 289 NLQRFDVSAYANN 301 (313)
T ss_dssp TGGGSCGGGTCSS
T ss_pred cCCCCCHHHhCCC
Confidence 4556655555444
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.46 E-value=3e-13 Score=100.79 Aligned_cols=144 Identities=18% Similarity=0.170 Sum_probs=114.7
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLR 82 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~ 82 (227)
.+++|+.|++++| .++.++ .++.+++|++|+++++ .+..++....+++|+.|++ .++.... ...+..+++++
T Consensus 66 ~l~~L~~L~L~~n-~i~~l~-~~~~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~l-~~~~~~~----~~~l~~l~~l~ 137 (210)
T d1h6ta2 66 YLPNVTKLFLNGN-KLTDIK-PLANLKNLGWLFLDEN-KVKDLSSLKDLKKLKSLSL-EHNGISD----INGLVHLPQLE 137 (210)
T ss_dssp GCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCGGGGTTCTTCCEEEC-TTSCCCC----CGGGGGCTTCC
T ss_pred hCCCCCEEeCCCc-cccCcc-ccccCccccccccccc-ccccccccccccccccccc-ccccccc----ccccccccccc
Confidence 5889999999996 567776 4789999999999987 4777776678899999999 7765432 22578889999
Q ss_pred eEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceee
Q 045261 83 WLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLC 162 (227)
Q Consensus 83 ~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~ 162 (227)
.+++.++ .+...+... .+++|+.++++++ .+..++ .+.++++|++|+++++ .++.++.-..+++|++|+
T Consensus 138 ~l~~~~n-~l~~~~~~~----~l~~L~~l~l~~n-~l~~i~----~l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~ 206 (210)
T d1h6ta2 138 SLYLGNN-KITDITVLS----RLTKLDTLSLEDN-QISDIV----PLAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLE 206 (210)
T ss_dssp EEECCSS-CCCCCGGGG----GCTTCSEEECCSS-CCCCCG----GGTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEE
T ss_pred ccccccc-ccccccccc----ccccccccccccc-cccccc----cccCCCCCCEEECCCC-CCCCChhhcCCCCCCEEE
Confidence 9999986 566655433 6889999999984 666665 4789999999999995 688887655678999999
Q ss_pred ecC
Q 045261 163 IFN 165 (227)
Q Consensus 163 i~~ 165 (227)
+++
T Consensus 207 Ls~ 209 (210)
T d1h6ta2 207 LFS 209 (210)
T ss_dssp EEE
T ss_pred ccC
Confidence 874
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.45 E-value=4.4e-13 Score=99.02 Aligned_cols=161 Identities=17% Similarity=0.226 Sum_probs=124.7
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+++++.|+++++ .+++++ +++.+++|++|+++++ .+..+++...+++|+.|++ .++. +. .+ + .+..+++|+.
T Consensus 39 l~~l~~L~l~~~-~i~~l~-~l~~l~nL~~L~Ls~N-~l~~~~~l~~l~~L~~L~l-~~n~-~~-~~-~-~l~~l~~L~~ 110 (199)
T d2omxa2 39 LDQVTTLQADRL-GIKSID-GVEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILM-NNNQ-IA-DI-T-PLANLTNLTG 110 (199)
T ss_dssp HTTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEEC-CSSC-CC-CC-G-GGTTCTTCSE
T ss_pred hcCCCEEECCCC-CCCCcc-ccccCCCcCcCccccc-cccCcccccCCcccccccc-cccc-cc-cc-c-cccccccccc
Confidence 468999999996 566664 5889999999999997 4777766678899999999 7654 33 22 2 4788999999
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeee
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCI 163 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i 163 (227)
|++.++ ....++. +. .+++|+.|+++++ .+..++ .+..+++|++|++.++ ++..++....+++|++|++
T Consensus 111 L~l~~~-~~~~~~~-~~---~l~~L~~L~l~~n-~l~~~~----~l~~~~~L~~L~l~~n-~l~~l~~l~~l~~L~~L~l 179 (199)
T d2omxa2 111 LTLFNN-QITDIDP-LK---NLTNLNRLELSSN-TISDIS----ALSGLTSLQQLNFSSN-QVTDLKPLANLTTLERLDI 179 (199)
T ss_dssp EECCSS-CCCCCGG-GT---TCTTCSEEECCSS-CCCCCG----GGTTCTTCSEEECCSS-CCCCCGGGTTCTTCCEEEC
T ss_pred cccccc-ccccccc-cc---hhhhhHHhhhhhh-hhcccc----cccccccccccccccc-cccCCccccCCCCCCEEEC
Confidence 999987 4444443 32 6899999999984 566654 5788999999999994 6777766566789999999
Q ss_pred cCCCCCCCCCCCCCCCCCcEE
Q 045261 164 FNCPNLTSLPKVGLPSSLLEL 184 (227)
Q Consensus 164 ~~c~~l~~~~~~~~~~~L~~L 184 (227)
++++ +++++....+++|++|
T Consensus 180 s~N~-i~~i~~l~~L~~L~~L 199 (199)
T d2omxa2 180 SSNK-VSDISVLAKLTNLESL 199 (199)
T ss_dssp CSSC-CCCCGGGGGCTTCSEE
T ss_pred CCCC-CCCCccccCCCCCCcC
Confidence 9974 7787765557788775
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=5.8e-12 Score=97.81 Aligned_cols=175 Identities=19% Similarity=0.272 Sum_probs=132.3
Q ss_pred CCCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 3 LPESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
-+++|++|+++++. +..++ ..+.++..++.+.+.....+..++.. ..+++|++|++ ..+. +. .+....+....
T Consensus 54 ~l~~L~~L~ls~n~-l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l-~~n~-~~-~~~~~~~~~~~ 129 (284)
T d1ozna_ 54 ACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL-DRCG-LQ-ELGPGLFRGLA 129 (284)
T ss_dssp TCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC-TTSC-CC-CCCTTTTTTCT
T ss_pred cccccccccccccc-ccccccccccccccccccccccccccccccchhhcccccCCEEec-CCcc-cc-cccccccchhc
Confidence 36789999999864 55544 55678889999988877778877655 77899999999 6644 33 33455677889
Q ss_pred ccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCc
Q 045261 80 SLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSS 157 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~ 157 (227)
+|+.+++.++ .++.++.... ..+++|+.|++++ +.+..++ ...+.++++|+++++.++ .+..++.. ...++
T Consensus 130 ~L~~l~l~~N-~l~~i~~~~f--~~~~~L~~L~l~~-N~l~~l~--~~~f~~l~~L~~l~l~~N-~l~~i~~~~f~~l~~ 202 (284)
T d1ozna_ 130 ALQYLYLQDN-ALQALPDDTF--RDLGNLTHLFLHG-NRISSVP--ERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGR 202 (284)
T ss_dssp TCCEEECCSS-CCCCCCTTTT--TTCTTCCEEECCS-SCCCEEC--TTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTT
T ss_pred ccchhhhccc-cccccChhHh--ccccchhhccccc-Ccccccc--hhhhccccccchhhhhhc-cccccChhHhhhhhh
Confidence 9999999987 7788876443 2678999999998 5778876 577889999999999995 45555433 44579
Q ss_pred cceeeecCCCCCCCCCC--CCCCCCCcEEeecCC
Q 045261 158 LLDLCIFNCPNLTSLPK--VGLPSSLLELTIFDC 189 (227)
Q Consensus 158 L~~l~i~~c~~l~~~~~--~~~~~~L~~L~l~~c 189 (227)
|++|+++++. +..++. .+.+++|++|++++.
T Consensus 203 L~~L~l~~N~-i~~~~~~~~~~~~~L~~L~l~~N 235 (284)
T d1ozna_ 203 LMTLYLFANN-LSALPTEALAPLRALQYLRLNDN 235 (284)
T ss_dssp CCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSS
T ss_pred cccccccccc-cccccccccccccccCEEEecCC
Confidence 9999999865 455543 245789999999973
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.39 E-value=2.4e-12 Score=103.58 Aligned_cols=167 Identities=18% Similarity=0.189 Sum_probs=110.4
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+++++.+.++++ .+..++. ....++|+.|+++++. +..++....+++|+.+++ .++ .++ ... .+..+++|++
T Consensus 196 l~~~~~l~l~~n-~i~~~~~-~~~~~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l-~~n-~l~-~~~--~~~~~~~L~~ 267 (384)
T d2omza2 196 LTNLESLIATNN-QISDITP-LGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDL-ANN-QIS-NLA--PLSGLTKLTE 267 (384)
T ss_dssp CTTCSEEECCSS-CCCCCGG-GGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEEC-CSS-CCC-CCG--GGTTCTTCSE
T ss_pred ccccceeeccCC-ccCCCCc-ccccCCCCEEECCCCC-CCCcchhhcccccchhcc-ccC-ccC-CCC--cccccccCCE
Confidence 567788888875 3444432 4567788888888763 555654467788888888 664 344 222 3667788888
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeee
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCI 163 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i 163 (227)
|+++++ .+..++... .++.++.+++.. +.+..++ .+..++++++|+++++ ++..++....+++|++|++
T Consensus 268 L~l~~~-~l~~~~~~~----~~~~l~~l~~~~-n~l~~~~----~~~~~~~l~~L~ls~n-~l~~l~~l~~l~~L~~L~L 336 (384)
T d2omza2 268 LKLGAN-QISNISPLA----GLTALTNLELNE-NQLEDIS----PISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFF 336 (384)
T ss_dssp EECCSS-CCCCCGGGT----TCTTCSEEECCS-SCCSCCG----GGGGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEEC
T ss_pred eeccCc-ccCCCCccc----cccccccccccc-ccccccc----ccchhcccCeEECCCC-CCCCCcccccCCCCCEEEC
Confidence 888875 555555433 566777777766 3444443 4567778888888774 5666654455677888888
Q ss_pred cCCCCCCCCCCCCCCCCCcEEeecCCc
Q 045261 164 FNCPNLTSLPKVGLPSSLLELTIFDCP 190 (227)
Q Consensus 164 ~~c~~l~~~~~~~~~~~L~~L~l~~c~ 190 (227)
++| .++.++....+++|++|++++|.
T Consensus 337 ~~n-~l~~l~~l~~l~~L~~L~l~~N~ 362 (384)
T d2omza2 337 ANN-KVSDVSSLANLTNINWLSAGHNQ 362 (384)
T ss_dssp CSS-CCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCC-CCCCChhHcCCCCCCEEECCCCc
Confidence 876 46666554456788888887663
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.37 E-value=2.3e-11 Score=95.17 Aligned_cols=173 Identities=14% Similarity=0.167 Sum_probs=123.5
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC----------------------------------
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE---------------------------------- 48 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~---------------------------------- 48 (227)
-+++|+.|++++|....-.|..+.++++|++|+++++. +..++..
T Consensus 53 ~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~-l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~ 131 (305)
T d1xkua_ 53 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL 131 (305)
T ss_dssp TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEEC
T ss_pred ccccccccccccccccccchhhhhCCCccCEecccCCc-cCcCccchhhhhhhhhccccchhhhhhhhhhcccccccccc
Confidence 46789999999976554446778999999999998863 4433322
Q ss_pred ---------------CCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCccceEEE
Q 045261 49 ---------------GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNI 113 (227)
Q Consensus 49 ---------------~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l 113 (227)
..+++|+.+++ .++ .+. .++ ...+++|++|++.++......+..+. .++.++.|++
T Consensus 132 ~~n~~~~~~~~~~~~~~l~~L~~l~l-~~n-~l~-~l~---~~~~~~L~~L~l~~n~~~~~~~~~~~---~~~~l~~L~~ 202 (305)
T d1xkua_ 132 GTNPLKSSGIENGAFQGMKKLSYIRI-ADT-NIT-TIP---QGLPPSLTELHLDGNKITKVDAASLK---GLNNLAKLGL 202 (305)
T ss_dssp CSSCCCGGGBCTTGGGGCTTCCEEEC-CSS-CCC-SCC---SSCCTTCSEEECTTSCCCEECTGGGT---TCTTCCEEEC
T ss_pred ccccccccCCCccccccccccCcccc-ccC-Ccc-ccC---cccCCccCEEECCCCcCCCCChhHhh---cccccccccc
Confidence 02345555555 443 222 121 23467899999998755554455553 6788999999
Q ss_pred ecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC-CCCCccceeeecCCCCCCCCCCCC--------CCCCCcEE
Q 045261 114 VEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV-GLPSSLLDLCIFNCPNLTSLPKVG--------LPSSLLEL 184 (227)
Q Consensus 114 ~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~l~i~~c~~l~~~~~~~--------~~~~L~~L 184 (227)
++ +.+..++ ...+.++++|++|+++++ +++.+|.. ...++|++|+++++ .++.++... ...+|+.|
T Consensus 203 s~-n~l~~~~--~~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L 277 (305)
T d1xkua_ 203 SF-NSISAVD--NGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGV 277 (305)
T ss_dssp CS-SCCCEEC--TTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEE
T ss_pred cc-ccccccc--cccccccccceeeecccc-cccccccccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEE
Confidence 98 4677765 478889999999999995 78888764 45689999999996 577765422 25789999
Q ss_pred eecCCc
Q 045261 185 TIFDCP 190 (227)
Q Consensus 185 ~l~~c~ 190 (227)
++++++
T Consensus 278 ~L~~N~ 283 (305)
T d1xkua_ 278 SLFSNP 283 (305)
T ss_dssp ECCSSS
T ss_pred ECCCCc
Confidence 999987
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.36 E-value=1.3e-12 Score=102.89 Aligned_cols=199 Identities=17% Similarity=0.172 Sum_probs=131.4
Q ss_pred CccEEEeccCCCCC--cCCcccCCCCCcceEeecCCCCCc-ccCCC-CCCCCcceeEeccCcccccccchhcccccCCcc
Q 045261 6 SISSVEIRRCEKLG--ALPSDMHKLNSLQDLDIRECPSIV-SFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81 (227)
Q Consensus 6 ~L~~L~l~~~~~l~--~lp~~~~~l~~L~~L~l~~c~~l~-~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L 81 (227)
.++.|+++++...+ .+|..++++++|++|++++|..+. .+|.. +.+++|++|++ +++ ++. ...+..+..+.+|
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~L-s~N-~l~-~~~~~~~~~~~~L 127 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI-THT-NVS-GAIPDFLSQIKTL 127 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEE-EEE-CCE-EECCGGGGGCTTC
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhh-ccc-ccc-ccccccccchhhh
Confidence 47788888864433 578888888889988888765554 67766 77888888888 663 444 3344457778888
Q ss_pred ceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCc-cEEeecCCCCCc-------------
Q 045261 82 RWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSL-RRLLIQDCPNLT------------- 147 (227)
Q Consensus 82 ~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L-~~L~l~~c~~l~------------- 147 (227)
+++++.++.....+|..+. .++.|+.++++++.....+| ..+..+.++ +.++++++ ++.
T Consensus 128 ~~l~l~~N~~~~~~p~~l~---~l~~L~~l~l~~n~l~~~ip---~~~~~l~~l~~~l~~~~n-~l~~~~~~~~~~l~~~ 200 (313)
T d1ogqa_ 128 VTLDFSYNALSGTLPPSIS---SLPNLVGITFDGNRISGAIP---DSYGSFSKLFTSMTISRN-RLTGKIPPTFANLNLA 200 (313)
T ss_dssp CEEECCSSEEESCCCGGGG---GCTTCCEEECCSSCCEEECC---GGGGCCCTTCCEEECCSS-EEEEECCGGGGGCCCS
T ss_pred cccccccccccccCchhhc---cCcccceeeccccccccccc---cccccccccccccccccc-cccccccccccccccc
Confidence 8888887766666776665 67788888888755555666 556666554 55555442 222
Q ss_pred -----------cCCCC-CCCCccceeeecCCCCCCCCCCCCCCCCCcEEeecCCchhhhhhcccCCCCcccccccceEEe
Q 045261 148 -----------SLPKV-GLPSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCPKLRKECKRDKGKGWSKIANIPMFLI 215 (227)
Q Consensus 148 -----------~~~~~-~~~~~L~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~~~~ 215 (227)
.++.. ...++++.+++.++.....++..+.+++|+.|+++++.. ....+..+..+.++..+.+
T Consensus 201 ~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l-----~g~iP~~l~~L~~L~~L~L 275 (313)
T d1ogqa_ 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI-----YGTLPQGLTQLKFLHSLNV 275 (313)
T ss_dssp EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCC-----EECCCGGGGGCTTCCEEEC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccCccCee-----cccCChHHhCCCCCCEEEC
Confidence 12221 234567777777766555555556678899999987652 2233445666777777777
Q ss_pred ccCC
Q 045261 216 DDTD 219 (227)
Q Consensus 216 ~~~~ 219 (227)
.+..
T Consensus 276 s~N~ 279 (313)
T d1ogqa_ 276 SFNN 279 (313)
T ss_dssp CSSE
T ss_pred cCCc
Confidence 6643
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.29 E-value=3.5e-11 Score=96.59 Aligned_cols=165 Identities=18% Similarity=0.221 Sum_probs=110.5
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
.++|+.|++++| .++.++ .+..+++|+.++++++. +..++....+++|+.|++ ++ ..+. ... .+..++.++.
T Consensus 218 ~~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l-~~-~~l~-~~~--~~~~~~~l~~ 289 (384)
T d2omza2 218 LTNLDELSLNGN-QLKDIG-TLASLTNLTDLDLANNQ-ISNLAPLSGLTKLTELKL-GA-NQIS-NIS--PLAGLTALTN 289 (384)
T ss_dssp CTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSC-CCCCGGGTTCTTCSEEEC-CS-SCCC-CCG--GGTTCTTCSE
T ss_pred cCCCCEEECCCC-CCCCcc-hhhcccccchhccccCc-cCCCCcccccccCCEeec-cC-cccC-CCC--cccccccccc
Confidence 467888888885 345544 46777888888888764 555555566778888888 55 3343 222 3566777788
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeee
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCI 163 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i 163 (227)
+.+..+ .+..++... .+++++.|++++ +.+..++ .+..+++|++|++++| .++.++....+++|++|++
T Consensus 290 l~~~~n-~l~~~~~~~----~~~~l~~L~ls~-n~l~~l~----~l~~l~~L~~L~L~~n-~l~~l~~l~~l~~L~~L~l 358 (384)
T d2omza2 290 LELNEN-QLEDISPIS----NLKNLTYLTLYF-NNISDIS----PVSSLTKLQRLFFANN-KVSDVSSLANLTNINWLSA 358 (384)
T ss_dssp EECCSS-CCSCCGGGG----GCTTCSEEECCS-SCCSCCG----GGGGCTTCCEEECCSS-CCCCCGGGGGCTTCCEEEC
T ss_pred cccccc-ccccccccc----hhcccCeEECCC-CCCCCCc----ccccCCCCCEEECCCC-CCCCChhHcCCCCCCEEEC
Confidence 877765 455444322 567788888877 4666654 3677888888888885 5666665455678888888
Q ss_pred cCCCCCCCCCCCCCCCCCcEEeecC
Q 045261 164 FNCPNLTSLPKVGLPSSLLELTIFD 188 (227)
Q Consensus 164 ~~c~~l~~~~~~~~~~~L~~L~l~~ 188 (227)
+++ .+++++....+++|++|++++
T Consensus 359 ~~N-~l~~l~~l~~l~~L~~L~L~~ 382 (384)
T d2omza2 359 GHN-QISDLTPLANLTRITQLGLND 382 (384)
T ss_dssp CSS-CCCBCGGGTTCTTCSEEECCC
T ss_pred CCC-cCCCChhhccCCCCCEeeCCC
Confidence 765 466665555567888888764
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=6.2e-11 Score=89.54 Aligned_cols=179 Identities=19% Similarity=0.171 Sum_probs=121.3
Q ss_pred CCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 4 PESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
+++|++|+++++.....++ ..+.++++++++.+..+..+..++.. ..+++|+.+++ .++ .+...........++.
T Consensus 52 l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l-~~~-~l~~~~~~~~~~~l~~ 129 (242)
T d1xwdc1 52 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI-SNT-GIKHLPDVHKIHSLQK 129 (242)
T ss_dssp CTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEE-ESC-CCCSCCCCTTTCBSSC
T ss_pred cchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccccc-chh-hhcccccccccccccc
Confidence 6899999999987666554 46788999999999888778777765 67899999999 774 4432211112333444
Q ss_pred cceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCcc
Q 045261 81 LRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSL 158 (227)
Q Consensus 81 L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L 158 (227)
+..+...+ ..+..++..... .....++.+++.+ +.+..++ ....+.++++++....++.++.++.. ..+++|
T Consensus 130 l~~~~~~n-~~l~~i~~~~~~-~~~~~l~~L~l~~-n~l~~i~---~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L 203 (242)
T d1xwdc1 130 VLLDIQDN-INIHTIERNSFV-GLSFESVILWLNK-NGIQEIH---NCAFNGTQLDELNLSDNNNLEELPNDVFHGASGP 203 (242)
T ss_dssp EEEEEESC-TTCCEECTTSST-TSBSSCEEEECCS-SCCCEEC---TTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCC
T ss_pred cccccccc-cccccccccccc-cccccceeeeccc-ccccccc---cccccchhhhccccccccccccccHHHhcCCCCC
Confidence 44443343 356666543320 0234788888876 6788887 55567788888877777889999875 345899
Q ss_pred ceeeecCCCCCCCCCCCCCCCCCcEEeecCCchh
Q 045261 159 LDLCIFNCPNLTSLPKVGLPSSLLELTIFDCPKL 192 (227)
Q Consensus 159 ~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~c~~l 192 (227)
++|+++++. ++.+|... +.++..|...++.++
T Consensus 204 ~~L~Ls~N~-l~~l~~~~-~~~l~~L~~l~~~~l 235 (242)
T d1xwdc1 204 VILDISRTR-IHSLPSYG-LENLKKLRARSTYNL 235 (242)
T ss_dssp SEEECTTSC-CCCCCSSS-CTTCCEEESSSEESS
T ss_pred CEEECCCCc-CCccCHHH-HcCCcccccCcCCCC
Confidence 999999865 77777643 455666655544333
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=9e-12 Score=88.81 Aligned_cols=79 Identities=13% Similarity=0.149 Sum_probs=36.5
Q ss_pred CccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceEE
Q 045261 6 SISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLL 85 (227)
Q Consensus 6 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~ 85 (227)
+++.|++++| .++.++..+..+++|++|+++++ .+..++....+++|++|++ +++ .++ .+++..+..+++|++|+
T Consensus 19 ~lr~L~L~~n-~I~~i~~~~~~l~~L~~L~Ls~N-~i~~l~~~~~l~~L~~L~l-s~N-~i~-~l~~~~~~~l~~L~~L~ 93 (162)
T d1a9na_ 19 RDRELDLRGY-KIPVIENLGATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLV-NNN-RIC-RIGEGLDQALPDLTELI 93 (162)
T ss_dssp SCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSS-CCCEECCCCCCSSCCEEEC-CSS-CCC-EECSCHHHHCTTCCEEE
T ss_pred cCcEEECCCC-CCCccCccccccccCCEEECCCC-CCCccCCcccCcchhhhhc-ccc-ccc-CCCccccccccccccce
Confidence 4555555553 34445443444555555555554 2444433344555555555 442 232 22222233455555555
Q ss_pred eccC
Q 045261 86 IERC 89 (227)
Q Consensus 86 l~~~ 89 (227)
+.++
T Consensus 94 L~~N 97 (162)
T d1a9na_ 94 LTNN 97 (162)
T ss_dssp CCSC
T ss_pred eccc
Confidence 5544
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.17 E-value=2e-10 Score=83.89 Aligned_cols=123 Identities=16% Similarity=0.239 Sum_probs=66.3
Q ss_pred cEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcc-cCCC--CCCCCcceeEeccCcccccccchhcccccCCccceE
Q 045261 8 SSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVS-FPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWL 84 (227)
Q Consensus 8 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~-~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L 84 (227)
+.++.++ ..++++|..+. +++++|+++++. +.. ++.. ..+++|+.|++ ++ +.+. .+.+..+..+++|++|
T Consensus 11 ~~v~Cs~-~~L~~iP~~lp--~~l~~L~Ls~N~-i~~~~~~~~f~~l~~L~~L~L-~~-N~i~-~~~~~~~~~~~~L~~L 83 (192)
T d1w8aa_ 11 TTVDCTG-RGLKEIPRDIP--LHTTELLLNDNE-LGRISSDGLFGRLPHLVKLEL-KR-NQLT-GIEPNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTT-SCCSSCCSCCC--TTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEEC-CS-SCCC-CBCTTTTTTCTTCCEE
T ss_pred CEEEEeC-CCcCccCCCCC--CCCCEEEeCCCC-CcccccccccCCCceEeeeec-cc-cccc-ccccccccccccccee
Confidence 3455555 34556665442 456666666643 332 3222 44566666666 44 3333 3334455566666666
Q ss_pred EeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCC
Q 045261 85 LIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDC 143 (227)
Q Consensus 85 ~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c 143 (227)
+++++ .+..++.... ..+++|++|++++ +.+..++ ...+..+++|++|++++.
T Consensus 84 ~Ls~N-~l~~l~~~~F--~~l~~L~~L~L~~-N~l~~i~--~~~f~~l~~L~~l~L~~N 136 (192)
T d1w8aa_ 84 QLGEN-KIKEISNKMF--LGLHQLKTLNLYD-NQISCVM--PGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp ECCSC-CCCEECSSSS--TTCTTCCEEECCS-SCCCEEC--TTSSTTCTTCCEEECTTC
T ss_pred eeccc-cccccCHHHH--hCCCcccccccCC-ccccccC--HHHhcCCccccccccccc
Confidence 66665 5555554332 1456666666666 4555555 345566666666666653
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.13 E-value=4.1e-10 Score=82.17 Aligned_cols=126 Identities=21% Similarity=0.240 Sum_probs=95.5
Q ss_pred ceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCccceE
Q 045261 32 QDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHL 111 (227)
Q Consensus 32 ~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L 111 (227)
+.++.++ ..+..+|.. .++++++|++ ++ +.++..+....++.+++|++|+++++ .+..++.+.. ..+++|++|
T Consensus 11 ~~v~Cs~-~~L~~iP~~-lp~~l~~L~L-s~-N~i~~~~~~~~f~~l~~L~~L~L~~N-~i~~~~~~~~--~~~~~L~~L 83 (192)
T d1w8aa_ 11 TTVDCTG-RGLKEIPRD-IPLHTTELLL-ND-NELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAF--EGASHIQEL 83 (192)
T ss_dssp TEEECTT-SCCSSCCSC-CCTTCSEEEC-CS-CCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTT--TTCTTCCEE
T ss_pred CEEEEeC-CCcCccCCC-CCCCCCEEEe-CC-CCCcccccccccCCCceEeeeecccc-cccccccccc--cccccccee
Confidence 4566655 357778763 5689999999 76 66653455667889999999999987 5555554332 268899999
Q ss_pred EEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCC--CCCccceeeecCCCC
Q 045261 112 NIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVG--LPSSLLDLCIFNCPN 168 (227)
Q Consensus 112 ~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~--~~~~L~~l~i~~c~~ 168 (227)
++++ +.+..++ ...|.++++|++|++++ +.++.++... ..++|+++++++.+.
T Consensus 84 ~Ls~-N~l~~l~--~~~F~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~l~L~~N~~ 138 (192)
T d1w8aa_ 84 QLGE-NKIKEIS--NKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp ECCS-CCCCEEC--SSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred eecc-ccccccC--HHHHhCCCcccccccCC-ccccccCHHHhcCCccccccccccccc
Confidence 9998 6888887 57789999999999999 6788887753 456788888877553
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.09 E-value=6.5e-09 Score=81.87 Aligned_cols=55 Identities=35% Similarity=0.484 Sum_probs=45.7
Q ss_pred CCCccEEeecCCCCCccCCCCCCCCccceeeecCCCCCCCCCCCCCCCCCcEEeecCCchhh
Q 045261 132 LTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCPKLR 193 (227)
Q Consensus 132 l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~ 193 (227)
+++|++|++++| .+..+|. ..++|+.|++++| .++++|. .+.+|++|++++|+ ++
T Consensus 283 ~~~L~~L~Ls~N-~l~~lp~--~~~~L~~L~L~~N-~L~~l~~--~~~~L~~L~L~~N~-L~ 337 (353)
T d1jl5a_ 283 PPSLEELNVSNN-KLIELPA--LPPRLERLIASFN-HLAEVPE--LPQNLKQLHVEYNP-LR 337 (353)
T ss_dssp CTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CS
T ss_pred CCCCCEEECCCC-ccCcccc--ccCCCCEEECCCC-cCCcccc--ccCCCCEEECcCCc-CC
Confidence 468999999995 6888886 5789999999876 5788886 56899999999987 55
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.02 E-value=7.6e-10 Score=74.99 Aligned_cols=101 Identities=20% Similarity=0.229 Sum_probs=61.0
Q ss_pred cEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccceEEe
Q 045261 8 SSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLI 86 (227)
Q Consensus 8 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l 86 (227)
|.|+++++ .++.++. +.++++|++|+++++ .++.+|.. ..+++|+.|++ ++ +.++ .+ + .+..+++|++|++
T Consensus 1 R~L~Ls~n-~l~~l~~-l~~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l-~~-N~i~-~l-~-~~~~l~~L~~L~l 72 (124)
T d1dcea3 1 RVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQA-SD-NALE-NV-D-GVANLPRLQELLL 72 (124)
T ss_dssp SEEECTTS-CCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEEC-CS-SCCC-CC-G-GGTTCSSCCEEEC
T ss_pred CEEEcCCC-CCCCCcc-cccCCCCCEEECCCC-ccCcchhhhhhhhccccccc-cc-cccc-cc-C-ccccccccCeEEC
Confidence 46778874 5666653 677777888888775 46666654 56677777777 55 4454 22 2 3566667777777
Q ss_pred ccCCCCCccCc--cCcCCCCCCccceEEEecCCCccc
Q 045261 87 ERCDESECFPD--GMMGMTLPTSLVHLNIVEFQKLKN 121 (227)
Q Consensus 87 ~~~~~l~~l~~--~~~~~~~~~~L~~L~l~~~~~l~~ 121 (227)
+++ .+..++. .+. .+++|+.|++++ +.+..
T Consensus 73 ~~N-~i~~~~~~~~l~---~~~~L~~L~l~~-N~i~~ 104 (124)
T d1dcea3 73 CNN-RLQQSAAIQPLV---SCPRLVLLNLQG-NSLCQ 104 (124)
T ss_dssp CSS-CCCSSSTTGGGG---GCTTCCEEECTT-SGGGG
T ss_pred CCC-ccCCCCCchhhc---CCCCCCEEECCC-CcCCc
Confidence 665 5554442 122 456666666665 33433
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=1.7e-10 Score=81.97 Aligned_cols=114 Identities=21% Similarity=0.232 Sum_probs=70.7
Q ss_pred cCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCC
Q 045261 25 MHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMT 103 (227)
Q Consensus 25 ~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 103 (227)
+.+..++++|+++++ .+..++.. ..+++|+.|++ ++ +.++ .+ ..+..+++|++|++++| .++.++.... .
T Consensus 14 ~~n~~~lr~L~L~~n-~I~~i~~~~~~l~~L~~L~L-s~-N~i~-~l--~~~~~l~~L~~L~ls~N-~i~~l~~~~~--~ 84 (162)
T d1a9na_ 14 YTNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDF-SD-NEIR-KL--DGFPLLRRLKTLLVNNN-RICRIGEGLD--Q 84 (162)
T ss_dssp EECTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEEC-CS-SCCC-EE--CCCCCCSSCCEEECCSS-CCCEECSCHH--H
T ss_pred ccCcCcCcEEECCCC-CCCccCccccccccCCEEEC-CC-CCCC-cc--CCcccCcchhhhhcccc-cccCCCcccc--c
Confidence 456667788888775 36666654 55677888887 66 4454 22 24667777777777776 5666665432 1
Q ss_pred CCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCC
Q 045261 104 LPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLP 150 (227)
Q Consensus 104 ~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~ 150 (227)
.+++|+.|++++ +.+..++. ...+..+++|++|++++|+ +...+
T Consensus 85 ~l~~L~~L~L~~-N~i~~~~~-l~~l~~l~~L~~L~l~~N~-i~~~~ 128 (162)
T d1a9na_ 85 ALPDLTELILTN-NSLVELGD-LDPLASLKSLTYLCILRNP-VTNKK 128 (162)
T ss_dssp HCTTCCEEECCS-CCCCCGGG-GGGGGGCTTCCEEECCSSG-GGGST
T ss_pred cccccccceecc-cccccccc-ccccccccccchhhcCCCc-ccccc
Confidence 467777777777 45555430 1345667777777777743 44333
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.90 E-value=2.4e-09 Score=72.42 Aligned_cols=80 Identities=23% Similarity=0.281 Sum_probs=49.0
Q ss_pred eeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCc
Q 045261 56 SLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSL 135 (227)
Q Consensus 56 ~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L 135 (227)
.|++ ++ ++++ .+ + .+..+++|++|+++++ .++.+|.++. .+++|+.|++++ +.+..++ ++..+++|
T Consensus 2 ~L~L-s~-n~l~-~l-~-~l~~l~~L~~L~ls~N-~l~~lp~~~~---~l~~L~~L~l~~-N~i~~l~----~~~~l~~L 67 (124)
T d1dcea3 2 VLHL-AH-KDLT-VL-C-HLEQLLLVTHLDLSHN-RLRALPPALA---ALRCLEVLQASD-NALENVD----GVANLPRL 67 (124)
T ss_dssp EEEC-TT-SCCS-SC-C-CGGGGTTCCEEECCSS-CCCCCCGGGG---GCTTCCEEECCS-SCCCCCG----GGTTCSSC
T ss_pred EEEc-CC-CCCC-CC-c-ccccCCCCCEEECCCC-ccCcchhhhh---hhhccccccccc-ccccccC----cccccccc
Confidence 4566 44 4443 22 2 3566777777777765 6666765554 566777777776 5666664 36667777
Q ss_pred cEEeecCCCCCccCC
Q 045261 136 RRLLIQDCPNLTSLP 150 (227)
Q Consensus 136 ~~L~l~~c~~l~~~~ 150 (227)
++|++++ +.+..++
T Consensus 68 ~~L~l~~-N~i~~~~ 81 (124)
T d1dcea3 68 QELLLCN-NRLQQSA 81 (124)
T ss_dssp CEEECCS-SCCCSSS
T ss_pred CeEECCC-CccCCCC
Confidence 7777776 4555554
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=1.2e-08 Score=71.81 Aligned_cols=84 Identities=27% Similarity=0.259 Sum_probs=40.2
Q ss_pred CCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCc
Q 045261 50 FPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGF 129 (227)
Q Consensus 50 ~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l 129 (227)
.+++|++|++ .+.+.++ .+.+..|..+++|+.|+++++ .++.++.... ..+++|++|++++ +.+..+| ...+
T Consensus 29 ~l~~l~~L~l-~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f--~~l~~L~~L~Ls~-N~l~~l~--~~~~ 100 (156)
T d2ifga3 29 GAENLTELYI-ENQQHLQ-HLELRDLRGLGELRNLTIVKS-GLRFVAPDAF--HFTPRLSRLNLSF-NALESLS--WKTV 100 (156)
T ss_dssp SCSCCSEEEC-CSCSSCC-EECGGGSCSCCCCSEEECCSS-CCCEECTTGG--GSCSCCCEEECCS-SCCSCCC--STTT
T ss_pred CccccCeeec-CCCcccc-ccCchhhccccccCcceeecc-ccCCcccccc--cccccccceeccC-CCCcccC--hhhh
Confidence 3445555555 4333343 333344555555555555554 4555533221 1455556666655 4555555 2222
Q ss_pred cCCCCccEEeecC
Q 045261 130 HSLTSLRRLLIQD 142 (227)
Q Consensus 130 ~~l~~L~~L~l~~ 142 (227)
. ..+|++|++++
T Consensus 101 ~-~~~l~~L~L~~ 112 (156)
T d2ifga3 101 Q-GLSLQELVLSG 112 (156)
T ss_dssp C-SCCCCEEECCS
T ss_pred c-cccccccccCC
Confidence 2 23455666655
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=98.82 E-value=2.1e-07 Score=72.90 Aligned_cols=92 Identities=23% Similarity=0.314 Sum_probs=67.8
Q ss_pred CCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccC-Cccce
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRL-TSLRW 83 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l-~~L~~ 83 (227)
.++++|+++++ .++++|+. +++|++|+++++ .++.+|. .+.+|+.|++ .+ +.++ . +..+ +.|++
T Consensus 38 ~~l~~LdLs~~-~L~~lp~~---~~~L~~L~Ls~N-~l~~lp~--~~~~L~~L~l-~~-n~l~-~-----l~~lp~~L~~ 102 (353)
T d1jl5a_ 38 RQAHELELNNL-GLSSLPEL---PPHLESLVASCN-SLTELPE--LPQSLKSLLV-DN-NNLK-A-----LSDLPPLLEY 102 (353)
T ss_dssp HTCSEEECTTS-CCSCCCSC---CTTCSEEECCSS-CCSSCCC--CCTTCCEEEC-CS-SCCS-C-----CCSCCTTCCE
T ss_pred cCCCEEEeCCC-CCCCCCCC---CCCCCEEECCCC-CCccccc--chhhhhhhhh-hh-cccc-h-----hhhhcccccc
Confidence 36889999995 67888864 468899999864 6888875 4678999998 66 3343 2 2223 46999
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecC
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEF 116 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~ 116 (227)
|+++++ .+..+|... .+++|+.|++.++
T Consensus 103 L~L~~n-~l~~lp~~~----~l~~L~~L~l~~~ 130 (353)
T d1jl5a_ 103 LGVSNN-QLEKLPELQ----NSSFLKIIDVDNN 130 (353)
T ss_dssp EECCSS-CCSSCCCCT----TCTTCCEEECCSS
T ss_pred cccccc-ccccccchh----hhccceeeccccc
Confidence 999987 677888643 6788999998874
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.67 E-value=9.5e-11 Score=86.14 Aligned_cols=127 Identities=16% Similarity=0.156 Sum_probs=90.2
Q ss_pred CccEEEeccC-CCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceE
Q 045261 6 SISSVEIRRC-EKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWL 84 (227)
Q Consensus 6 ~L~~L~l~~~-~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L 84 (227)
.++.+++++. ..+..++.++..+++|++|+++++ .+..++....+++|+.|++ ++ +.+. .++ .....+++|++|
T Consensus 24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n-~I~~i~~l~~l~~L~~L~L-s~-N~i~-~i~-~~~~~~~~L~~L 98 (198)
T d1m9la_ 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKISSLSGMENLRILSL-GR-NLIK-KIE-NLDAVADTLEEL 98 (198)
T ss_dssp TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEE-EESCCCCHHHHTTCCEEEC-CE-EEEC-SCS-SHHHHHHHCCEE
T ss_pred ccceeeeecccCchhhhhhHHhcccccceeECccc-CCCCcccccCCccccChhh-cc-cccc-ccc-cccccccccccc
Confidence 4555666652 345667778889999999999886 4777765567889999999 66 4454 332 223445689999
Q ss_pred EeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCC
Q 045261 85 LIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCP 144 (227)
Q Consensus 85 ~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~ 144 (227)
+++++ .++.++... .+++|+.|++++ +.+..++. ...+..+++|++|++++++
T Consensus 99 ~l~~N-~i~~l~~~~----~l~~L~~L~L~~-N~i~~~~~-~~~l~~l~~L~~L~L~~N~ 151 (198)
T d1m9la_ 99 WISYN-QIASLSGIE----KLVNLRVLYMSN-NKITNWGE-IDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp ECSEE-ECCCHHHHH----HHHHSSEEEESE-EECCCHHH-HHHHTTTTTCSEEEECSSH
T ss_pred ccccc-ccccccccc----cccccccccccc-chhccccc-cccccCCCccceeecCCCc
Confidence 99987 677765422 578999999998 45555430 0357789999999999854
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.65 E-value=1.5e-11 Score=90.57 Aligned_cols=142 Identities=18% Similarity=0.222 Sum_probs=94.3
Q ss_pred cceEeecC-CCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCcc
Q 045261 31 LQDLDIRE-CPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSL 108 (227)
Q Consensus 31 L~~L~l~~-c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L 108 (227)
++.+++.+ .+.+..++.. ..+++|+.|++ ++ +.++ .+ + .+..+++|++|++++| .++.++.... .+++|
T Consensus 25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~L-s~-n~I~-~i-~-~l~~l~~L~~L~Ls~N-~i~~i~~~~~---~~~~L 95 (198)
T d1m9la_ 25 AEKVELHGMIPPIEKMDATLSTLKACKHLAL-ST-NNIE-KI-S-SLSGMENLRILSLGRN-LIKKIENLDA---VADTL 95 (198)
T ss_dssp CSCEECCBCCTTCCCCHHHHHHTTTCCEEEC-SE-EEES-CC-C-CHHHHTTCCEEECCEE-EECSCSSHHH---HHHHC
T ss_pred cceeeeecccCchhhhhhHHhcccccceeEC-cc-cCCC-Cc-c-cccCCccccChhhccc-cccccccccc---ccccc
Confidence 44555543 1233444333 56889999999 65 5565 33 2 4788999999999987 6777775442 45689
Q ss_pred ceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCC---CCCCCccceeeecCCCCCCCCCCC----------
Q 045261 109 VHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPK---VGLPSSLLDLCIFNCPNLTSLPKV---------- 175 (227)
Q Consensus 109 ~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~---~~~~~~L~~l~i~~c~~l~~~~~~---------- 175 (227)
+.|++++ +.+..++ .+.++++|++|++++ +.+..++. -..+++|+.|++++++.....+..
T Consensus 96 ~~L~l~~-N~i~~l~----~~~~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~v 169 (198)
T d1m9la_ 96 EELWISY-NQIASLS----GIEKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp CEEECSE-EECCCHH----HHHHHHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHH
T ss_pred ccccccc-ccccccc----ccccccccccccccc-chhccccccccccCCCccceeecCCCccccCcccccchhhHHHHH
Confidence 9999988 4677664 467888999999998 45665542 245778999999987643222211
Q ss_pred -CCCCCCcEEeec
Q 045261 176 -GLPSSLLELTIF 187 (227)
Q Consensus 176 -~~~~~L~~L~l~ 187 (227)
..+++|+.||-.
T Consensus 170 i~~lp~L~~LD~~ 182 (198)
T d1m9la_ 170 VKRLPNLKKLDGM 182 (198)
T ss_dssp HHHCSSCCEESSG
T ss_pred HHHCCCcCEeCCc
Confidence 125777777643
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=1.7e-07 Score=65.60 Aligned_cols=88 Identities=24% Similarity=0.182 Sum_probs=58.5
Q ss_pred cccccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC
Q 045261 73 WGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV 152 (227)
Q Consensus 73 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~ 152 (227)
..+..+++|++|.+.++..++.++.... ..+++|+.|++++ +.+..++ ...+.++++|++|++++ ++++.++..
T Consensus 25 ~~l~~l~~l~~L~l~~n~~l~~i~~~~f--~~l~~L~~L~Ls~-N~l~~i~--~~~f~~l~~L~~L~Ls~-N~l~~l~~~ 98 (156)
T d2ifga3 25 HHLPGAENLTELYIENQQHLQHLELRDL--RGLGELRNLTIVK-SGLRFVA--PDAFHFTPRLSRLNLSF-NALESLSWK 98 (156)
T ss_dssp TTSCSCSCCSEEECCSCSSCCEECGGGS--CSCCCCSEEECCS-SCCCEEC--TTGGGSCSCCCEEECCS-SCCSCCCST
T ss_pred ccccCccccCeeecCCCccccccCchhh--ccccccCcceeec-cccCCcc--cccccccccccceeccC-CCCcccChh
Confidence 3466677888888876656777765432 2577888888887 5677775 46677888888888888 567777664
Q ss_pred CC-CCccceeeecCC
Q 045261 153 GL-PSSLLDLCIFNC 166 (227)
Q Consensus 153 ~~-~~~L~~l~i~~c 166 (227)
.+ ...+++|+++++
T Consensus 99 ~~~~~~l~~L~L~~N 113 (156)
T d2ifga3 99 TVQGLSLQELVLSGN 113 (156)
T ss_dssp TTCSCCCCEEECCSS
T ss_pred hhccccccccccCCC
Confidence 22 224555555543
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=97.06 E-value=2.8e-05 Score=60.80 Aligned_cols=80 Identities=20% Similarity=0.174 Sum_probs=40.5
Q ss_pred CCccceEEEecCCCccc------cCCCCCCccCCCCccEEeecCCCCCccC-----CC-CCCCCccceeeecCCCCCCCC
Q 045261 105 PTSLVHLNIVEFQKLKN------LSSSSSGFHSLTSLRRLLIQDCPNLTSL-----PK-VGLPSSLLDLCIFNCPNLTSL 172 (227)
Q Consensus 105 ~~~L~~L~l~~~~~l~~------l~~~~~~l~~l~~L~~L~l~~c~~l~~~-----~~-~~~~~~L~~l~i~~c~~l~~~ 172 (227)
.+.|++|++++|. +.. +. ..+...++|++|+++++ .++.. .. ....+.|++|++++|. +++-
T Consensus 185 ~~~L~~L~L~~n~-i~~~g~~~~l~---~~l~~~~~L~~L~Ls~N-~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~ 258 (344)
T d2ca6a1 185 HRLLHTVKMVQNG-IRPEGIEHLLL---EGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCL-LSAR 258 (344)
T ss_dssp CTTCCEEECCSSC-CCHHHHHHHHH---TTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHH
T ss_pred hhhhccccccccc-ccccccccchh---hhhcchhhhcccccccc-cccccccccccccccccccchhhhhhcCc-cCch
Confidence 4456666666642 221 12 34556677777777764 33221 10 1234567777777765 2211
Q ss_pred -----CC---CCCCCCCcEEeecCCc
Q 045261 173 -----PK---VGLPSSLLELTIFDCP 190 (227)
Q Consensus 173 -----~~---~~~~~~L~~L~l~~c~ 190 (227)
.. ....++|++|+++++.
T Consensus 259 g~~~l~~~l~~~~~~~L~~L~ls~N~ 284 (344)
T d2ca6a1 259 GAAAVVDAFSKLENIGLQTLRLQYNE 284 (344)
T ss_dssp HHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred hhHHHHHHhhhccCCCCCEEECCCCc
Confidence 00 0113567777777764
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=96.96 E-value=6.7e-05 Score=58.52 Aligned_cols=106 Identities=17% Similarity=0.134 Sum_probs=68.0
Q ss_pred cccCCccceEEeccCCCCCc------cCccCcCCCCCCccceEEEecCCCccc-----cCCCCCCccCCCCccEEeecCC
Q 045261 75 LHRLTSLRWLLIERCDESEC------FPDGMMGMTLPTSLVHLNIVEFQKLKN-----LSSSSSGFHSLTSLRRLLIQDC 143 (227)
Q Consensus 75 ~~~l~~L~~L~l~~~~~l~~------l~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~l~~l~~L~~L~l~~c 143 (227)
+..++.|+.|++.+| .+.. +.... ...++|+.|+++++. +.. +. ..+...++|++|++++|
T Consensus 182 l~~~~~L~~L~L~~n-~i~~~g~~~~l~~~l---~~~~~L~~L~Ls~N~-i~~~g~~~L~---~~l~~~~~L~~L~Ls~n 253 (344)
T d2ca6a1 182 FQSHRLLHTVKMVQN-GIRPEGIEHLLLEGL---AYCQELKVLDLQDNT-FTHLGSSALA---IALKSWPNLRELGLNDC 253 (344)
T ss_dssp HHHCTTCCEEECCSS-CCCHHHHHHHHHTTG---GGCTTCCEEECCSSC-CHHHHHHHHH---HHGGGCTTCCEEECTTC
T ss_pred hhhhhhhcccccccc-cccccccccchhhhh---cchhhhccccccccc-cccccccccc---ccccccccchhhhhhcC
Confidence 345678889998887 4432 11222 257889999999853 432 33 45668899999999997
Q ss_pred CCCccCCC--------CCCCCccceeeecCCCCCCCC-----CCC--CCCCCCcEEeecCCc
Q 045261 144 PNLTSLPK--------VGLPSSLLDLCIFNCPNLTSL-----PKV--GLPSSLLELTIFDCP 190 (227)
Q Consensus 144 ~~l~~~~~--------~~~~~~L~~l~i~~c~~l~~~-----~~~--~~~~~L~~L~l~~c~ 190 (227)
. ++..+. ....+.|++|+++++. ++.- ... ...++|++|+++++.
T Consensus 254 ~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N~ 313 (344)
T d2ca6a1 254 L-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR 313 (344)
T ss_dssp C-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred c-cCchhhHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence 4 443111 0123679999999975 4431 111 125789999998754
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.68 E-value=6.9e-05 Score=52.15 Aligned_cols=66 Identities=15% Similarity=0.028 Sum_probs=40.3
Q ss_pred cccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCC
Q 045261 75 LHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCP 144 (227)
Q Consensus 75 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~ 144 (227)
...+++|++|+++++ .++.++........+++|+.|++++ +.+.+++ ........+|++|++.+++
T Consensus 61 ~~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~-N~i~~l~--~l~~l~~~~L~~L~L~~Np 126 (162)
T d1koha1 61 EENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG-NELKSER--ELDKIKGLKLEELWLDGNS 126 (162)
T ss_dssp HHHCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTT-SCCCCGG--GHHHHTTCCCSSCCCTTST
T ss_pred HHhCCCCCEeeCCCc-cccCCchhHHHHhhCCccccccccc-Cccccch--hhhhhhccccceeecCCCC
Confidence 356788888888886 6665543110001467888888887 6777665 1122234567777777743
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.47 E-value=0.00034 Score=55.79 Aligned_cols=108 Identities=21% Similarity=0.223 Sum_probs=70.2
Q ss_pred CcceEeecCCCCCcccC--CC-CCCCCcceeEeccCccccccc---chhcccccCCccceEEeccCCCCCc-----cCcc
Q 045261 30 SLQDLDIRECPSIVSFP--EE-GFPTNLTSLAIGEDMKMLYKG---LVQWGLHRLTSLRWLLIERCDESEC-----FPDG 98 (227)
Q Consensus 30 ~L~~L~l~~c~~l~~~~--~~-~~l~~L~~L~l~~~~~~l~~~---~~~~~~~~l~~L~~L~l~~~~~l~~-----l~~~ 98 (227)
+|+.|++++ ..+.... .. ..+++++.|++ .+|. +++. .....+..+++|++|+++++ .+++ +...
T Consensus 3 ~l~~ld~~~-~~i~~~~~~~l~~~l~~l~~L~L-~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~ 78 (460)
T d1z7xw1 3 DIQSLDIQC-EELSDARWAELLPLLQQCQVVRL-DDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQG 78 (460)
T ss_dssp EEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEE-ESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHT
T ss_pred CCCEEEeeC-CcCChHHHHHHHHhCCCCCEEEe-CCCC-CCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHHH
Confidence 688999965 4565422 11 56789999999 8874 4421 11224567899999999987 4542 2222
Q ss_pred CcCCCCCCccceEEEecCCCccc-----cCCCCCCccCCCCccEEeecCCCCCcc
Q 045261 99 MMGMTLPTSLVHLNIVEFQKLKN-----LSSSSSGFHSLTSLRRLLIQDCPNLTS 148 (227)
Q Consensus 99 ~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~l~~l~~L~~L~l~~c~~l~~ 148 (227)
+. ....+|++|++++|. +++ ++ ..+..+++|++|+++++ .++.
T Consensus 79 l~--~~~~~L~~L~L~~n~-it~~~~~~l~---~~l~~~~~L~~L~L~~N-~i~~ 126 (460)
T d1z7xw1 79 LQ--TPSCKIQKLSLQNCC-LTGAGCGVLS---STLRTLPTLQELHLSDN-LLGD 126 (460)
T ss_dssp TC--STTCCCCEEECTTSC-CBGGGHHHHH---HHTTSCTTCCEEECCSS-BCHH
T ss_pred Hh--cCCCCCCEEECCCCC-cccccccccc---chhhccccccccccccc-cchh
Confidence 21 123579999999864 543 23 45678899999999985 3443
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.07 E-value=0.00039 Score=55.48 Aligned_cols=107 Identities=18% Similarity=0.206 Sum_probs=70.6
Q ss_pred CCccEEEeccCCCCCc--CCcccCCCCCcceEeecCCCCCcc-----cCCC-CCCCCcceeEeccCcccccccch---hc
Q 045261 5 ESISSVEIRRCEKLGA--LPSDMHKLNSLQDLDIRECPSIVS-----FPEE-GFPTNLTSLAIGEDMKMLYKGLV---QW 73 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~l~~c~~l~~-----~~~~-~~l~~L~~L~l~~~~~~l~~~~~---~~ 73 (227)
++|+.|++++ ..++. +.+.+..+++++.|++++|. +.+ +... ..+++|++|++ +++ .+++... ..
T Consensus 2 ~~l~~ld~~~-~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdL-s~N-~i~~~~~~~l~~ 77 (460)
T d1z7xw1 2 LDIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNL-RSN-ELGDVGVHCVLQ 77 (460)
T ss_dssp EEEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEEC-TTC-CCHHHHHHHHHH
T ss_pred CCCCEEEeeC-CcCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEEC-cCC-cCChHHHHHHHH
Confidence 4789999987 45653 23445678899999999995 542 2222 46789999999 774 5542111 11
Q ss_pred ccc-cCCccceEEeccCCCCCcc-----CccCcCCCCCCccceEEEecCCCcc
Q 045261 74 GLH-RLTSLRWLLIERCDESECF-----PDGMMGMTLPTSLVHLNIVEFQKLK 120 (227)
Q Consensus 74 ~~~-~l~~L~~L~l~~~~~l~~l-----~~~~~~~~~~~~L~~L~l~~~~~l~ 120 (227)
.+. ...+|++|++++| .++.. +..+. ..++|++|+++++ .+.
T Consensus 78 ~l~~~~~~L~~L~L~~n-~it~~~~~~l~~~l~---~~~~L~~L~L~~N-~i~ 125 (460)
T d1z7xw1 78 GLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLR---TLPTLQELHLSDN-LLG 125 (460)
T ss_dssp TTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTT---SCTTCCEEECCSS-BCH
T ss_pred HHhcCCCCCCEEECCCC-Cccccccccccchhh---ccccccccccccc-cch
Confidence 222 3457999999998 56542 33333 5789999999984 443
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.97 E-value=0.00079 Score=46.51 Aligned_cols=85 Identities=16% Similarity=0.038 Sum_probs=50.7
Q ss_pred CCCCcceeEeccCccccccc-chhcccccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCC---
Q 045261 50 FPTNLTSLAIGEDMKMLYKG-LVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSS--- 125 (227)
Q Consensus 50 ~l~~L~~L~l~~~~~~l~~~-~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~--- 125 (227)
.+++|++|++ ++ ++++.. .....+..+++|+.|+++++ .+++++.... .....|+.|++.+++-.......
T Consensus 63 ~~~~L~~L~L-s~-N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~--l~~~~L~~L~L~~Npl~~~~~~~~~y 137 (162)
T d1koha1 63 NIPELLSLNL-SN-NRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDK--IKGLKLEELWLDGNSLSDTFRDQSTY 137 (162)
T ss_dssp HCTTCCCCCC-CS-SCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHH--HTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred hCCCCCEeeC-CC-ccccCCchhHHHHhhCCcccccccccC-ccccchhhhh--hhccccceeecCCCCcCcCcccchhH
Confidence 5788999999 66 555421 11234567889999999986 7777665211 13456888888884332222100
Q ss_pred -CCCccCCCCccEEe
Q 045261 126 -SSGFHSLTSLRRLL 139 (227)
Q Consensus 126 -~~~l~~l~~L~~L~ 139 (227)
..-+..+|+|+.||
T Consensus 138 ~~~i~~~~P~L~~LD 152 (162)
T d1koha1 138 ISAIRERFPKLLRLD 152 (162)
T ss_dssp HHHHHTTSTTCCEET
T ss_pred HHHHHHHCCCCCEEC
Confidence 01134677887774
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=94.27 E-value=0.011 Score=40.60 Aligned_cols=35 Identities=9% Similarity=0.248 Sum_probs=15.6
Q ss_pred CCccEEEeccCCCCCc-----CCcccCCCCCcceEeecCC
Q 045261 5 ESISSVEIRRCEKLGA-----LPSDMHKLNSLQDLDIREC 39 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~c 39 (227)
++|+.|+++++..++. +-..+...++|++|++++|
T Consensus 15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n 54 (167)
T d1pgva_ 15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT 54 (167)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS
T ss_pred CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc
Confidence 4555555555433321 1123334445555555554
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=94.17 E-value=0.0081 Score=41.33 Aligned_cols=33 Identities=21% Similarity=0.099 Sum_probs=16.5
Q ss_pred CccceEEEecCCCccc-----cCCCCCCccCCCCccEEeecC
Q 045261 106 TSLVHLNIVEFQKLKN-----LSSSSSGFHSLTSLRRLLIQD 142 (227)
Q Consensus 106 ~~L~~L~l~~~~~l~~-----l~~~~~~l~~l~~L~~L~l~~ 142 (227)
+.|++|++++| .+.. +- ..+...++|++|++++
T Consensus 72 ~~L~~L~L~~n-~i~~~g~~~l~---~aL~~n~sL~~L~l~~ 109 (167)
T d1pgva_ 72 PSLRVLNVESN-FLTPELLARLL---RSTLVTQSIVEFKADN 109 (167)
T ss_dssp SSCCEEECCSS-BCCHHHHHHHH---HHTTTTCCCSEEECCC
T ss_pred ccccceeeehh-hcchHHHHHHH---HHHHhCCcCCEEECCC
Confidence 45666666554 2222 11 2344455666666665
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=92.05 E-value=0.016 Score=39.58 Aligned_cols=14 Identities=21% Similarity=0.161 Sum_probs=7.1
Q ss_pred ccCCccceEEeccC
Q 045261 76 HRLTSLRWLLIERC 89 (227)
Q Consensus 76 ~~l~~L~~L~l~~~ 89 (227)
...++++.++++++
T Consensus 71 ~~~~~l~~l~l~~~ 84 (166)
T d1io0a_ 71 KVNNTLKSLNVESN 84 (166)
T ss_dssp HHCSSCCEEECCSS
T ss_pred hhcccchhhhhccc
Confidence 33455555555544
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=88.81 E-value=0.074 Score=36.03 Aligned_cols=83 Identities=17% Similarity=0.145 Sum_probs=52.6
Q ss_pred CCCccEEEeccCCCCCc-----CCcccCCCCCcceEeecCCCCCcc-----cCCC-CCCCCcceeEeccCccccccc--c
Q 045261 4 PESISSVEIRRCEKLGA-----LPSDMHKLNSLQDLDIRECPSIVS-----FPEE-GFPTNLTSLAIGEDMKMLYKG--L 70 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~c~~l~~-----~~~~-~~l~~L~~L~l~~~~~~l~~~--~ 70 (227)
.++|++|+++++..++. +-..+...++|++|++++|. +.. +... ...++++.+++ .+|..-.+. .
T Consensus 16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~l~~l~l-~~~~~~~~g~~~ 93 (166)
T d1io0a_ 16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNV-ESNFISGSGILA 93 (166)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEEC-CSSCCCHHHHHH
T ss_pred CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCc-ccHHHHHHHHHHHhhcccchhhhh-ccccccchhHHH
Confidence 57899999998665542 33455678899999999984 432 1111 34578999999 664432211 1
Q ss_pred hhcccccCCccceEEecc
Q 045261 71 VQWGLHRLTSLRWLLIER 88 (227)
Q Consensus 71 ~~~~~~~l~~L~~L~l~~ 88 (227)
....+...++|+.+++..
T Consensus 94 l~~~l~~~~~L~~l~L~l 111 (166)
T d1io0a_ 94 LVEALQSNTSLIELRIDN 111 (166)
T ss_dssp HHHGGGGCSSCCEEECCC
T ss_pred HHHHHHhCccccEEeecc
Confidence 122455667788776654
|